Query 012712
Match_columns 458
No_of_seqs 789 out of 1863
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 14:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 3.7E-58 1.3E-62 434.5 45.3 424 3-455 64-565 (611)
2 1nr0_A Actin interacting prote 100.0 2.8E-57 9.5E-62 428.5 41.9 377 3-455 152-609 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 8.5E-56 2.9E-60 418.0 46.1 371 4-454 186-577 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 6.4E-54 2.2E-58 405.2 44.2 325 52-455 212-537 (577)
5 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-51 5.3E-56 402.4 43.1 418 3-455 22-659 (902)
6 1pgu_A Actin interacting prote 100.0 8.5E-51 2.9E-55 387.1 41.7 396 2-456 22-613 (615)
7 1vyh_C Platelet-activating fac 100.0 5.8E-51 2E-55 366.5 37.7 308 54-455 101-409 (410)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-51 4.6E-56 422.1 37.9 410 3-456 620-1157(1249)
9 1got_B GT-beta; complex (GTP-b 100.0 1.3E-49 4.5E-54 349.0 39.1 293 51-413 45-340 (340)
10 3ow8_A WD repeat-containing pr 100.0 8.7E-50 3E-54 346.4 36.8 291 53-415 24-320 (321)
11 4g56_B MGC81050 protein; prote 100.0 2.6E-50 8.8E-55 355.2 33.0 290 58-456 39-342 (357)
12 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-50 1.5E-54 411.0 39.0 426 3-457 662-1249(1249)
13 3ow8_A WD repeat-containing pr 100.0 1.5E-49 5.2E-54 344.9 36.2 287 101-455 29-319 (321)
14 2ynn_A Coatomer subunit beta'; 100.0 2.8E-49 9.7E-54 341.2 37.0 295 50-416 2-302 (304)
15 3iz6_a 40S ribosomal protein R 100.0 4.5E-50 1.5E-54 357.4 32.8 307 51-418 56-377 (380)
16 2pbi_B Guanine nucleotide-bind 100.0 9.3E-49 3.2E-53 345.0 39.1 295 51-413 54-354 (354)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.7E-49 2.6E-53 344.7 38.3 301 50-456 4-334 (345)
18 4gqb_B Methylosome protein 50; 100.0 1.4E-49 4.7E-54 347.3 32.7 289 58-456 27-330 (344)
19 1vyh_C Platelet-activating fac 100.0 9.9E-50 3.4E-54 358.5 32.6 296 3-414 113-409 (410)
20 1r5m_A SIR4-interacting protei 100.0 2.9E-48 9.9E-53 352.7 37.6 333 58-455 42-423 (425)
21 2pm9_A Protein WEB1, protein t 100.0 2.7E-49 9.4E-54 358.4 30.6 333 2-456 16-413 (416)
22 4ery_A WD repeat-containing pr 100.0 9.3E-48 3.2E-52 333.9 38.0 296 51-415 13-311 (312)
23 4gqb_B Methylosome protein 50; 100.0 5.6E-49 1.9E-53 343.5 29.7 295 2-418 34-333 (344)
24 4g56_B MGC81050 protein; prote 100.0 2E-48 6.7E-53 343.2 30.8 288 2-417 46-344 (357)
25 3frx_A Guanine nucleotide-bind 100.0 4.5E-47 1.6E-51 329.6 36.7 293 50-417 6-318 (319)
26 1erj_A Transcriptional repress 100.0 2.1E-46 7E-51 335.4 38.7 309 53-417 57-390 (393)
27 1got_B GT-beta; complex (GTP-b 100.0 1.2E-46 4.1E-51 330.2 36.5 286 100-454 51-340 (340)
28 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-47 5.5E-52 374.1 34.1 437 3-455 63-730 (902)
29 1gxr_A ESG1, transducin-like e 100.0 1E-46 3.4E-51 331.6 35.9 326 60-457 8-337 (337)
30 2ynn_A Coatomer subunit beta'; 100.0 1.4E-46 4.7E-51 324.5 35.3 286 97-455 7-300 (304)
31 2hes_X YDR267CP; beta-propelle 100.0 2.1E-46 7.3E-51 327.0 36.8 297 51-456 4-327 (330)
32 1r5m_A SIR4-interacting protei 100.0 1.3E-46 4.6E-51 341.8 36.9 327 2-415 49-424 (425)
33 3iz6_a 40S ribosomal protein R 100.0 1.9E-47 6.4E-52 340.5 30.0 314 84-456 47-374 (380)
34 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-46 4.1E-51 369.9 38.2 355 3-455 18-421 (814)
35 3vl1_A 26S proteasome regulato 100.0 4.4E-47 1.5E-51 344.2 32.1 341 3-457 61-419 (420)
36 2xzm_R RACK1; ribosome, transl 100.0 3.4E-46 1.2E-50 328.0 36.7 298 49-418 9-342 (343)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.8E-47 3.3E-51 331.3 33.2 305 3-420 21-339 (345)
38 2pbi_B Guanine nucleotide-bind 100.0 1.7E-45 5.9E-50 324.2 37.4 288 101-454 61-354 (354)
39 1gxr_A ESG1, transducin-like e 100.0 6.2E-46 2.1E-50 326.6 34.2 317 3-414 14-335 (337)
40 3frx_A Guanine nucleotide-bind 100.0 6E-45 2E-49 316.3 37.1 284 100-456 13-316 (319)
41 2xzm_R RACK1; ribosome, transl 100.0 7E-45 2.4E-49 319.6 35.8 296 7-376 36-342 (343)
42 4aow_A Guanine nucleotide-bind 100.0 4E-44 1.4E-48 315.4 37.6 297 50-418 27-339 (340)
43 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-44 5E-49 355.1 38.6 334 50-455 2-384 (814)
44 4ery_A WD repeat-containing pr 100.0 5.4E-44 1.9E-48 310.2 37.7 284 100-455 19-310 (312)
45 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.6E-44 3.3E-48 324.3 39.2 319 52-456 109-441 (445)
46 2j04_B YDR362CP, TAU91; beta p 100.0 9.3E-46 3.2E-50 338.7 25.1 320 7-456 170-516 (524)
47 1pgu_A Actin interacting prote 100.0 8.5E-44 2.9E-48 338.9 38.1 351 3-416 69-614 (615)
48 1erj_A Transcriptional repress 100.0 1E-43 3.6E-48 317.8 34.9 288 102-456 62-388 (393)
49 4a11_B DNA excision repair pro 100.0 6.8E-44 2.3E-48 322.1 32.9 349 55-455 37-403 (408)
50 1sq9_A Antiviral protein SKI8; 100.0 1.9E-43 6.5E-48 318.0 35.6 298 51-417 6-396 (397)
51 2hes_X YDR267CP; beta-propelle 100.0 1.5E-43 5.1E-48 309.0 32.9 288 4-416 20-328 (330)
52 3zwl_B Eukaryotic translation 100.0 8.3E-43 2.8E-47 310.6 37.4 303 53-419 24-349 (369)
53 4e54_B DNA damage-binding prot 100.0 1.3E-43 4.3E-48 321.9 32.2 318 52-420 110-434 (435)
54 1k8k_C P40, ARP2/3 complex 41 100.0 6.2E-43 2.1E-47 311.8 35.9 308 57-455 4-359 (372)
55 3gre_A Serine/threonine-protei 100.0 5.1E-44 1.8E-48 325.6 29.4 369 6-454 35-437 (437)
56 3i2n_A WD repeat-containing pr 100.0 5E-43 1.7E-47 310.6 34.0 300 55-418 12-355 (357)
57 3v7d_B Cell division control p 100.0 3.6E-42 1.2E-46 316.0 40.8 326 53-453 113-459 (464)
58 3dm0_A Maltose-binding peripla 100.0 5.6E-43 1.9E-47 336.4 36.3 294 52-415 373-692 (694)
59 3ei3_B DNA damage-binding prot 100.0 1.3E-42 4.4E-47 310.7 35.9 314 51-416 63-382 (383)
60 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-42 8.3E-47 300.4 34.4 297 50-424 7-304 (313)
61 4aow_A Guanine nucleotide-bind 100.0 5.8E-42 2E-46 301.6 37.1 286 100-456 34-336 (340)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-42 1.5E-46 313.3 36.6 306 6-417 125-443 (445)
63 3k26_A Polycomb protein EED; W 100.0 2.3E-43 7.8E-48 313.9 27.1 317 56-456 13-365 (366)
64 2j04_A TAU60, YPL007P, hypothe 100.0 9.6E-44 3.3E-48 316.3 23.2 320 1-446 18-350 (588)
65 3zwl_B Eukaryotic translation 100.0 1.8E-41 6E-46 302.1 37.7 295 100-456 28-345 (369)
66 4gga_A P55CDC, cell division c 100.0 1.4E-41 4.9E-46 307.1 36.8 283 5-419 112-398 (420)
67 3v7d_B Cell division control p 100.0 1.5E-41 5.2E-46 311.8 35.4 309 7-413 129-460 (464)
68 3dm0_A Maltose-binding peripla 100.0 1.5E-41 5.1E-46 326.5 35.5 302 4-373 388-692 (694)
69 3dwl_C Actin-related protein 2 100.0 1.2E-42 4.1E-47 310.4 24.6 304 57-455 7-377 (377)
70 3dwl_C Actin-related protein 2 100.0 6.1E-43 2.1E-47 312.3 22.6 251 1-291 14-281 (377)
71 4h5i_A Guanine nucleotide-exch 100.0 1.5E-41 5E-46 300.1 30.4 289 104-455 14-341 (365)
72 3ei3_B DNA damage-binding prot 100.0 1.5E-41 5.1E-46 303.8 30.4 297 91-456 61-381 (383)
73 2pm7_B Protein transport prote 100.0 5.4E-41 1.8E-45 288.5 32.6 269 55-415 3-284 (297)
74 3vl1_A 26S proteasome regulato 100.0 1E-41 3.4E-46 309.1 29.0 302 63-456 58-364 (420)
75 2pm9_A Protein WEB1, protein t 100.0 2.4E-42 8.1E-47 312.8 24.8 293 62-456 13-336 (416)
76 4e54_B DNA damage-binding prot 100.0 1.8E-41 6.1E-46 307.8 29.5 291 101-456 116-429 (435)
77 4ggc_A P55CDC, cell division c 100.0 4E-40 1.4E-44 287.0 36.6 282 4-417 31-316 (318)
78 2pm7_B Protein transport prote 100.0 2.1E-40 7E-45 284.8 33.7 264 100-456 5-284 (297)
79 4h5i_A Guanine nucleotide-exch 100.0 1.2E-41 4.1E-46 300.6 26.4 290 61-417 14-344 (365)
80 1sq9_A Antiviral protein SKI8; 100.0 1.2E-40 4.3E-45 299.6 33.2 295 98-456 10-394 (397)
81 1k8k_C P40, ARP2/3 complex 41 100.0 7.1E-41 2.4E-45 298.5 31.3 317 2-376 12-363 (372)
82 3dw8_B Serine/threonine-protei 100.0 2.5E-40 8.4E-45 302.5 35.5 329 59-454 26-443 (447)
83 3i2n_A WD repeat-containing pr 100.0 7.7E-41 2.6E-45 296.5 30.3 298 92-456 6-352 (357)
84 4aez_A CDC20, WD repeat-contai 100.0 4.1E-40 1.4E-44 295.8 34.8 286 58-420 88-384 (401)
85 1yfq_A Cell cycle arrest prote 100.0 4.6E-40 1.6E-44 289.7 32.7 289 56-414 6-322 (342)
86 4a11_B DNA excision repair pro 100.0 1.9E-39 6.7E-44 293.0 35.9 347 3-415 48-404 (408)
87 3mmy_A MRNA export factor; mRN 100.0 3.7E-40 1.3E-44 293.4 30.7 297 50-415 28-345 (368)
88 3bg1_A Protein SEC13 homolog; 100.0 1.1E-40 3.9E-45 289.0 26.6 273 56-415 8-292 (316)
89 4aez_A CDC20, WD repeat-contai 100.0 1E-39 3.5E-44 293.2 33.3 282 8-382 101-388 (401)
90 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-39 5.5E-44 282.6 33.4 288 90-456 4-295 (313)
91 3k26_A Polycomb protein EED; W 100.0 2.3E-41 7.9E-46 301.0 22.1 322 4-415 24-365 (366)
92 3gre_A Serine/threonine-protei 100.0 1.8E-40 6.1E-45 302.3 27.4 330 3-413 68-437 (437)
93 3bg1_A Protein SEC13 homolog; 100.0 2.4E-40 8.3E-45 286.9 25.2 272 97-456 6-292 (316)
94 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-39 2.4E-43 291.0 32.5 297 56-436 128-434 (435)
95 3jrp_A Fusion protein of prote 100.0 3.8E-39 1.3E-43 288.1 29.9 340 54-456 4-377 (379)
96 4gga_A P55CDC, cell division c 100.0 2.7E-38 9.2E-43 285.7 35.1 280 107-456 108-394 (420)
97 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-38 4.3E-43 281.5 31.0 310 55-420 5-341 (351)
98 2j04_B YDR362CP, TAU91; beta p 100.0 5.8E-40 2E-44 300.4 23.1 299 60-441 132-458 (524)
99 3mmy_A MRNA export factor; mRN 100.0 3.3E-38 1.1E-42 280.8 30.0 293 89-454 25-343 (368)
100 2j04_A TAU60, YPL007P, hypothe 100.0 9.7E-40 3.3E-44 290.7 18.9 304 59-455 13-319 (588)
101 1l0q_A Surface layer protein; 100.0 1.2E-36 4.2E-41 272.8 38.9 330 11-443 3-364 (391)
102 4ggc_A P55CDC, cell division c 100.0 5.1E-37 1.8E-41 267.4 34.2 280 107-456 28-314 (318)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-38 8.3E-43 284.6 25.3 285 7-419 43-345 (402)
104 3dw8_B Serine/threonine-protei 100.0 2E-37 6.7E-42 283.3 31.4 330 3-372 33-444 (447)
105 1yfq_A Cell cycle arrest prote 100.0 5.5E-37 1.9E-41 270.1 31.7 279 99-449 6-315 (342)
106 3jrp_A Fusion protein of prote 100.0 6.8E-37 2.3E-41 273.5 30.6 263 101-456 8-286 (379)
107 1p22_A F-BOX/WD-repeat protein 100.0 4.4E-37 1.5E-41 279.2 29.7 273 101-456 130-413 (435)
108 3vu4_A KMHSV2; beta-propeller 100.0 8.9E-36 3.1E-40 262.4 34.5 301 87-456 3-335 (355)
109 4gq1_A NUP37; propeller, trans 100.0 1.7E-36 5.9E-41 270.8 30.1 270 102-456 87-388 (393)
110 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-36 1.3E-40 265.6 29.6 309 97-456 4-336 (351)
111 3vu4_A KMHSV2; beta-propeller 100.0 8.3E-36 2.8E-40 262.6 31.2 294 55-418 13-338 (355)
112 3bws_A Protein LP49; two-domai 100.0 4.5E-35 1.5E-39 266.4 37.0 287 54-416 116-432 (433)
113 3bws_A Protein LP49; two-domai 100.0 6.6E-35 2.2E-39 265.3 37.9 322 60-455 59-430 (433)
114 2xyi_A Probable histone-bindin 100.0 1.9E-35 6.4E-40 267.7 32.2 260 101-418 125-412 (430)
115 3jro_A Fusion protein of prote 100.0 1.7E-36 5.9E-41 292.7 26.3 257 55-416 3-285 (753)
116 2aq5_A Coronin-1A; WD40 repeat 100.0 4.2E-36 1.4E-40 270.1 26.4 282 106-456 36-341 (402)
117 1l0q_A Surface layer protein; 100.0 3.3E-34 1.1E-38 257.1 38.3 305 74-455 3-340 (391)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6E-35 2E-39 266.3 33.0 310 61-416 4-391 (450)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-34 5.1E-39 263.6 34.7 286 105-456 5-390 (450)
120 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-35 4.2E-40 260.9 25.1 274 68-415 43-332 (343)
121 4gq1_A NUP37; propeller, trans 100.0 1.6E-36 5.4E-41 271.0 18.5 280 4-415 95-388 (393)
122 2xyi_A Probable histone-bindin 100.0 1.3E-34 4.5E-39 262.1 31.2 255 146-456 124-409 (430)
123 1nir_A Nitrite reductase; hemo 100.0 1E-33 3.5E-38 261.4 35.5 324 68-455 144-512 (543)
124 3jro_A Fusion protein of prote 100.0 2.9E-35 1E-39 284.1 26.1 264 100-456 5-284 (753)
125 3lrv_A PRE-mRNA-splicing facto 100.0 9.1E-35 3.1E-39 255.3 23.6 262 117-455 47-331 (343)
126 1k32_A Tricorn protease; prote 100.0 3.4E-33 1.2E-37 279.7 34.1 361 3-455 57-500 (1045)
127 1nir_A Nitrite reductase; hemo 100.0 9.5E-33 3.3E-37 255.0 34.2 339 5-424 144-522 (543)
128 2w18_A PALB2, fancn, partner a 100.0 6.4E-33 2.2E-37 231.9 29.0 291 50-455 24-355 (356)
129 2w18_A PALB2, fancn, partner a 100.0 3.6E-33 1.2E-37 233.4 27.2 279 13-414 57-355 (356)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.9E-33 2E-37 249.2 27.0 303 60-438 61-409 (415)
131 1k32_A Tricorn protease; prote 100.0 1.8E-32 6.1E-37 274.5 33.2 356 10-455 24-459 (1045)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-31 3.9E-36 240.8 30.2 293 8-398 72-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 100.0 1.2E-30 4.2E-35 253.3 30.1 330 61-454 36-456 (741)
134 2ecf_A Dipeptidyl peptidase IV 100.0 7.2E-30 2.5E-34 247.9 29.1 338 3-417 41-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 100.0 4E-30 1.4E-34 249.1 27.2 345 3-444 21-427 (723)
136 2z3z_A Dipeptidyl aminopeptida 100.0 1.2E-28 4.2E-33 237.8 30.0 324 10-418 35-437 (706)
137 2z3z_A Dipeptidyl aminopeptida 100.0 1.8E-28 6.1E-33 236.8 28.4 324 64-455 28-433 (706)
138 1xfd_A DIP, dipeptidyl aminope 100.0 2.7E-28 9.1E-33 236.3 26.7 325 62-455 17-391 (723)
139 3u4y_A Uncharacterized protein 100.0 3.9E-27 1.3E-31 206.0 31.4 288 68-423 4-311 (331)
140 1ri6_A Putative isomerase YBHE 100.0 1E-27 3.6E-32 210.9 26.7 310 75-439 7-335 (343)
141 3u4y_A Uncharacterized protein 100.0 1.8E-26 6E-31 201.9 31.9 309 4-397 3-326 (331)
142 1ri6_A Putative isomerase YBHE 100.0 1.9E-26 6.5E-31 202.8 30.6 307 12-398 7-335 (343)
143 2ojh_A Uncharacterized protein 100.0 8.3E-27 2.8E-31 200.6 25.9 257 15-407 17-293 (297)
144 1pby_B Quinohemoprotein amine 100.0 2.1E-26 7E-31 202.0 23.7 279 11-386 2-322 (337)
145 2ojh_A Uncharacterized protein 100.0 4.5E-26 1.5E-30 196.0 24.9 255 78-448 17-293 (297)
146 3vgz_A Uncharacterized protein 100.0 2.8E-25 9.6E-30 196.1 30.4 278 60-447 39-334 (353)
147 1pby_B Quinohemoprotein amine 99.9 6E-26 2E-30 199.1 24.9 271 74-420 2-314 (337)
148 3o4h_A Acylamino-acid-releasin 99.9 5.6E-26 1.9E-30 214.0 24.0 274 60-416 20-315 (582)
149 1z68_A Fibroblast activation p 99.9 2.7E-25 9.3E-30 214.9 26.7 327 3-419 20-446 (719)
150 3hfq_A Uncharacterized protein 99.9 2.7E-24 9.2E-29 189.2 30.2 289 81-420 14-323 (347)
151 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-24 5.8E-29 190.8 29.0 287 4-384 5-335 (349)
152 3o4h_A Acylamino-acid-releasin 99.9 1.9E-25 6.5E-30 210.5 23.3 263 103-449 20-304 (582)
153 1z68_A Fibroblast activation p 99.9 9.2E-26 3.1E-30 218.2 21.6 329 66-454 20-440 (719)
154 3vgz_A Uncharacterized protein 99.9 6.9E-24 2.4E-28 187.2 29.9 271 4-407 46-335 (353)
155 3hfq_A Uncharacterized protein 99.9 1.6E-23 5.3E-28 184.3 28.4 263 59-378 37-323 (347)
156 3scy_A Hypothetical bacterial 99.9 1.6E-22 5.5E-27 178.8 34.8 314 74-435 14-360 (361)
157 3pe7_A Oligogalacturonate lyas 99.9 5.1E-24 1.7E-28 190.6 24.0 296 87-455 14-380 (388)
158 1jmx_B Amine dehydrogenase; ox 99.9 2.4E-23 8.2E-28 183.4 26.5 297 66-420 4-329 (349)
159 3pe7_A Oligogalacturonate lyas 99.9 1.4E-23 4.9E-28 187.7 24.9 289 56-415 25-381 (388)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 2.9E-23 1E-27 186.7 26.3 217 4-237 42-280 (434)
161 3scy_A Hypothetical bacterial 99.9 5.5E-22 1.9E-26 175.4 30.4 305 9-394 12-360 (361)
162 4a5s_A Dipeptidyl peptidase 4 99.9 1.1E-22 3.8E-27 196.6 28.0 351 3-443 21-432 (740)
163 2oiz_A Aromatic amine dehydrog 99.9 2.7E-22 9.2E-27 176.2 26.7 310 7-398 12-360 (361)
164 3c5m_A Oligogalacturonate lyas 99.9 5.5E-23 1.9E-27 184.5 19.0 294 63-455 37-380 (396)
165 2oiz_A Aromatic amine dehydrog 99.9 3E-21 1E-25 169.6 28.6 306 72-439 14-360 (361)
166 4a5s_A Dipeptidyl peptidase 4 99.9 4E-22 1.4E-26 192.7 24.8 328 62-455 17-396 (740)
167 2oit_A Nucleoporin 214KDA; NH2 99.9 2.6E-22 9E-27 180.5 21.3 218 205-455 38-276 (434)
168 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.1E-21 1.4E-25 169.7 25.6 274 120-455 4-339 (365)
169 1qks_A Cytochrome CD1 nitrite 99.9 2.1E-19 7.3E-24 165.4 37.1 320 71-454 165-535 (567)
170 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.1E-20 7.1E-25 165.2 28.4 262 60-417 38-342 (365)
171 1qks_A Cytochrome CD1 nitrite 99.9 4.6E-19 1.6E-23 163.1 35.6 335 8-422 165-544 (567)
172 3c5m_A Oligogalacturonate lyas 99.9 7.4E-21 2.5E-25 170.6 22.2 295 3-420 40-388 (396)
173 3azo_A Aminopeptidase; POP fam 99.9 1.1E-20 3.8E-25 181.0 23.1 296 56-422 18-375 (662)
174 3azo_A Aminopeptidase; POP fam 99.9 8.1E-20 2.8E-24 175.0 27.4 290 101-455 20-365 (662)
175 3fvz_A Peptidyl-glycine alpha- 99.9 1.2E-18 4.3E-23 151.3 29.4 264 61-417 23-323 (329)
176 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-18 9E-23 146.5 29.0 244 148-457 27-280 (286)
177 2dg1_A DRP35, lactonase; beta 99.8 1.5E-17 5.1E-22 145.2 33.0 276 2-406 9-300 (333)
178 1q7f_A NHL, brain tumor CG1071 99.8 1.8E-17 6.2E-22 141.3 29.8 245 102-417 27-281 (286)
179 2gop_A Trilobed protease; beta 99.8 5.3E-18 1.8E-22 149.0 26.5 268 62-427 15-341 (347)
180 3fvz_A Peptidyl-glycine alpha- 99.8 1E-17 3.5E-22 145.5 27.4 248 150-456 23-321 (329)
181 2dg1_A DRP35, lactonase; beta 99.8 1.1E-17 3.6E-22 146.1 25.6 268 105-447 6-300 (333)
182 2bkl_A Prolyl endopeptidase; m 99.8 2.2E-17 7.6E-22 158.4 28.7 252 59-422 118-403 (695)
183 2z2n_A Virginiamycin B lyase; 99.8 1.6E-15 5.6E-20 130.1 37.2 285 57-417 10-296 (299)
184 3sjl_D Methylamine dehydrogena 99.8 2.4E-17 8.3E-22 142.1 24.9 306 67-437 38-384 (386)
185 2xdw_A Prolyl endopeptidase; a 99.8 6.5E-17 2.2E-21 155.7 29.5 252 59-418 122-416 (710)
186 2mad_H Methylamine dehydrogena 99.8 9.6E-16 3.3E-20 134.5 34.3 292 6-422 28-356 (373)
187 2gop_A Trilobed protease; beta 99.8 2.5E-17 8.5E-22 144.7 24.0 255 106-455 16-329 (347)
188 3dsm_A Uncharacterized protein 99.8 6E-17 2.1E-21 140.4 25.7 268 80-420 14-305 (328)
189 3sjl_D Methylamine dehydrogena 99.8 3E-16 1E-20 135.3 29.5 304 5-396 39-384 (386)
190 3dsm_A Uncharacterized protein 99.8 2.3E-16 8E-21 136.7 29.2 286 18-393 15-319 (328)
191 3e5z_A Putative gluconolactona 99.8 1.2E-16 4.2E-21 136.7 26.0 232 147-448 24-278 (296)
192 3no2_A Uncharacterized protein 99.8 4.5E-16 1.6E-20 130.7 25.1 223 8-280 3-231 (276)
193 3e5z_A Putative gluconolactona 99.8 1E-15 3.6E-20 131.0 27.9 243 102-418 25-288 (296)
194 2z2n_A Virginiamycin B lyase; 99.8 2.6E-14 8.7E-19 122.6 35.9 277 102-454 12-292 (299)
195 2xdw_A Prolyl endopeptidase; a 99.7 1.7E-15 5.7E-20 145.9 29.0 249 149-455 123-412 (710)
196 1rwi_B Serine/threonine-protei 99.7 1.5E-15 5.1E-20 128.2 25.3 237 152-457 25-264 (270)
197 2qc5_A Streptogramin B lactona 99.7 9.4E-14 3.2E-18 119.1 36.5 280 59-414 17-298 (300)
198 1rwi_B Serine/threonine-protei 99.7 3.9E-15 1.3E-19 125.7 26.1 241 106-419 25-267 (270)
199 3c75_H MADH, methylamine dehyd 99.7 2.9E-15 1E-19 131.7 25.4 291 7-381 81-409 (426)
200 2bkl_A Prolyl endopeptidase; m 99.7 1.7E-15 6E-20 145.3 21.2 273 117-455 78-395 (695)
201 2qc5_A Streptogramin B lactona 99.7 3.8E-13 1.3E-17 115.3 33.6 276 103-454 18-297 (300)
202 2mad_H Methylamine dehydrogena 99.7 2.8E-13 9.6E-18 118.8 30.6 275 68-455 27-348 (373)
203 1yr2_A Prolyl oligopeptidase; 99.7 2.5E-14 8.5E-19 138.3 26.1 248 59-420 160-445 (741)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.5E-13 5.1E-18 118.7 28.5 249 58-416 14-299 (314)
205 3no2_A Uncharacterized protein 99.7 9.4E-14 3.2E-18 116.6 26.2 247 72-384 4-262 (276)
206 3c75_H MADH, methylamine dehyd 99.7 3E-14 1E-18 125.3 23.5 291 71-422 82-408 (426)
207 1yr2_A Prolyl oligopeptidase; 99.7 4.6E-14 1.6E-18 136.4 26.0 276 113-455 115-439 (741)
208 2qe8_A Uncharacterized protein 99.6 6.5E-14 2.2E-18 122.2 20.9 279 62-413 17-318 (343)
209 3hrp_A Uncharacterized protein 99.6 6.2E-13 2.1E-17 118.4 26.3 240 151-454 131-407 (409)
210 3g4e_A Regucalcin; six bladed 99.6 3.1E-12 1.1E-16 109.2 29.6 226 151-443 13-258 (297)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.4E-12 1.2E-16 110.1 29.8 242 151-455 18-297 (314)
212 2qe8_A Uncharacterized protein 99.6 7.1E-14 2.4E-18 122.0 18.2 269 105-450 17-314 (343)
213 1mda_H Methylamine dehydrogena 99.6 1.7E-13 5.7E-18 118.7 19.5 293 9-395 30-366 (368)
214 3g4e_A Regucalcin; six bladed 99.6 2.1E-11 7.1E-16 104.1 32.2 240 57-405 8-261 (297)
215 3hrp_A Uncharacterized protein 99.6 5.4E-12 1.8E-16 112.4 28.1 270 62-372 131-408 (409)
216 1xip_A Nucleoporin NUP159; bet 99.6 8.6E-14 2.9E-18 120.7 15.7 181 63-280 39-232 (388)
217 1mda_H Methylamine dehydrogena 99.6 4E-13 1.4E-17 116.3 19.4 283 84-435 47-365 (368)
218 2ghs_A AGR_C_1268P; regucalcin 99.5 7.7E-12 2.6E-16 108.1 27.3 221 153-443 51-288 (326)
219 1yiq_A Quinohemoprotein alcoho 99.5 2.8E-12 9.5E-17 121.9 25.7 213 10-239 70-342 (689)
220 3iuj_A Prolyl endopeptidase; h 99.5 2.1E-12 7.2E-17 123.6 24.7 122 58-184 125-270 (693)
221 1xip_A Nucleoporin NUP159; bet 99.5 1.9E-13 6.6E-18 118.5 15.3 180 205-443 39-230 (388)
222 3dr2_A Exported gluconolactona 99.5 6.1E-12 2.1E-16 107.9 24.6 229 149-448 43-298 (305)
223 2ghs_A AGR_C_1268P; regucalcin 99.5 1.3E-10 4.3E-15 100.5 32.5 230 62-405 49-291 (326)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.5 3.6E-11 1.2E-15 106.5 29.7 313 73-454 53-375 (376)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.5 5.7E-11 2E-15 105.2 30.4 318 9-413 52-375 (376)
226 1kb0_A Quinohemoprotein alcoho 99.5 5.7E-12 1.9E-16 119.5 25.0 212 10-239 77-350 (677)
227 2ece_A 462AA long hypothetical 99.5 3.3E-11 1.1E-15 104.7 27.3 231 160-445 93-399 (462)
228 3dr2_A Exported gluconolactona 99.5 2.4E-11 8.2E-16 104.1 26.2 239 56-371 39-303 (305)
229 3iuj_A Prolyl endopeptidase; h 99.5 1.4E-11 4.7E-16 118.1 23.5 237 149-454 127-402 (693)
230 4a2l_A BT_4663, two-component 99.5 1.7E-09 5.8E-14 105.5 38.5 327 64-455 175-524 (795)
231 3hxj_A Pyrrolo-quinoline quino 99.4 9.3E-12 3.2E-16 108.2 18.9 296 10-417 30-325 (330)
232 3hxj_A Pyrrolo-quinoline quino 99.4 1.1E-11 3.6E-16 107.9 17.9 298 66-455 24-322 (330)
233 2hz6_A Endoplasmic reticulum t 99.4 4.2E-14 1.4E-18 124.3 1.8 142 72-237 8-151 (369)
234 4a2l_A BT_4663, two-component 99.4 6.4E-08 2.2E-12 94.5 44.4 329 61-454 262-611 (795)
235 2hz6_A Endoplasmic reticulum t 99.3 3.5E-13 1.2E-17 118.5 3.2 184 9-238 8-195 (369)
236 1yiq_A Quinohemoprotein alcoho 99.3 2.9E-10 9.8E-15 108.1 23.1 316 9-401 120-533 (689)
237 1npe_A Nidogen, entactin; glyc 99.3 1.1E-08 3.7E-13 85.7 29.8 252 74-398 2-263 (267)
238 1fwx_A Nitrous oxide reductase 99.3 1.7E-09 5.9E-14 97.5 25.6 257 117-419 100-434 (595)
239 1kb0_A Quinohemoprotein alcoho 99.3 9.7E-10 3.3E-14 104.3 25.2 305 73-455 77-505 (677)
240 1kv9_A Type II quinohemoprotei 99.3 2.1E-09 7.2E-14 101.9 26.0 209 10-239 66-337 (668)
241 2ece_A 462AA long hypothetical 99.3 4.6E-09 1.6E-13 91.4 24.1 251 8-280 93-399 (462)
242 3v9f_A Two-component system se 99.2 3.6E-07 1.2E-11 89.1 40.6 327 62-454 211-565 (781)
243 1npe_A Nidogen, entactin; glyc 99.2 3.2E-08 1.1E-12 82.8 28.4 251 119-439 2-263 (267)
244 3v9f_A Two-component system se 99.2 5.5E-07 1.9E-11 87.7 40.4 322 61-453 257-607 (781)
245 2iwa_A Glutamine cyclotransfer 99.2 1.1E-08 3.9E-13 83.5 23.1 204 4-236 26-238 (266)
246 1fwx_A Nitrous oxide reductase 99.2 7.3E-10 2.5E-14 99.9 16.1 208 161-455 100-359 (595)
247 2ad6_A Methanol dehydrogenase 99.1 8E-09 2.7E-13 95.9 22.3 367 10-442 62-522 (571)
248 1w6s_A Methanol dehydrogenase 99.1 1.2E-07 4.1E-12 88.0 29.1 213 10-239 62-346 (599)
249 3nol_A Glutamine cyclotransfer 99.1 7.7E-08 2.6E-12 77.5 23.0 213 48-282 28-245 (262)
250 3nol_A Glutamine cyclotransfer 99.1 8.7E-09 3E-13 83.0 17.2 187 6-223 50-244 (262)
251 2iwa_A Glutamine cyclotransfer 99.1 2E-07 6.9E-12 76.2 25.0 223 50-292 8-238 (266)
252 2fp8_A Strictosidine synthase; 99.1 2.4E-07 8.1E-12 79.9 26.9 104 62-169 19-144 (322)
253 3nok_A Glutaminyl cyclase; bet 99.1 1.3E-08 4.4E-13 82.0 16.6 184 10-223 65-254 (268)
254 1flg_A Protein (quinoprotein e 99.0 9.1E-08 3.1E-12 88.9 24.6 218 10-243 68-363 (582)
255 1kv9_A Type II quinohemoprotei 99.0 1.4E-07 4.8E-12 89.5 25.4 112 73-191 66-196 (668)
256 3qqz_A Putative uncharacterize 99.0 6.1E-07 2.1E-11 72.9 24.0 221 55-289 20-251 (255)
257 2p4o_A Hypothetical protein; p 99.0 5.5E-06 1.9E-10 70.6 31.4 124 52-183 23-148 (306)
258 2fp8_A Strictosidine synthase; 99.0 2.6E-07 8.8E-12 79.6 23.3 247 152-456 20-312 (322)
259 3mbr_X Glutamine cyclotransfer 98.9 1.1E-07 3.8E-12 76.0 18.1 184 10-223 31-223 (243)
260 2ad6_A Methanol dehydrogenase 98.9 5.8E-07 2E-11 83.5 25.8 112 73-191 62-194 (571)
261 3nok_A Glutaminyl cyclase; bet 98.9 4.9E-07 1.7E-11 72.9 21.7 208 52-280 44-253 (268)
262 1k3i_A Galactose oxidase precu 98.9 2.2E-07 7.5E-12 88.4 23.2 289 109-446 190-530 (656)
263 1flg_A Protein (quinoprotein e 98.9 1.6E-06 5.4E-11 80.7 27.5 357 72-443 68-546 (582)
264 1ijq_A LDL receptor, low-densi 98.9 1.7E-05 5.9E-10 67.8 31.3 237 75-383 3-247 (316)
265 3mbr_X Glutamine cyclotransfer 98.9 2.7E-06 9.2E-11 68.1 23.9 213 50-282 8-224 (243)
266 3v64_C Agrin; beta propeller, 98.9 1.9E-05 6.6E-10 68.5 31.7 258 62-393 34-294 (349)
267 1w6s_A Methanol dehydrogenase 98.9 2.3E-06 7.8E-11 79.5 26.6 114 73-191 62-200 (599)
268 1k3i_A Galactose oxidase precu 98.9 6.4E-07 2.2E-11 85.2 23.6 245 9-291 197-497 (656)
269 3s94_A LRP-6, low-density lipo 98.9 7E-05 2.4E-09 70.1 40.8 324 62-441 84-449 (619)
270 3v65_B Low-density lipoprotein 98.8 1.4E-05 4.8E-10 70.5 29.5 255 65-393 80-337 (386)
271 2p4o_A Hypothetical protein; p 98.8 2.5E-06 8.6E-11 72.8 24.0 224 4-280 37-276 (306)
272 3p5b_L Low density lipoprotein 98.8 5.7E-05 2E-09 66.8 31.4 248 75-393 85-339 (400)
273 3v65_B Low-density lipoprotein 98.8 3.2E-05 1.1E-09 68.1 29.3 201 62-292 116-319 (386)
274 3v64_C Agrin; beta propeller, 98.7 5.3E-05 1.8E-09 65.7 29.4 220 128-417 53-276 (349)
275 3qqz_A Putative uncharacterize 98.7 1.7E-05 5.9E-10 64.4 23.5 217 145-414 21-251 (255)
276 3sov_A LRP-6, low-density lipo 98.7 5.2E-05 1.8E-09 64.7 27.5 247 75-393 6-257 (318)
277 3ei3_A DNA damage-binding prot 98.7 0.00039 1.3E-08 69.8 37.4 359 61-456 553-954 (1158)
278 4a0p_A LRP6, LRP-6, low-densit 98.6 0.00037 1.3E-08 65.4 43.7 348 62-443 37-449 (628)
279 2xe4_A Oligopeptidase B; hydro 98.6 1.7E-06 5.9E-11 83.5 18.4 192 5-233 180-398 (751)
280 1ijq_A LDL receptor, low-densi 98.6 0.00017 5.9E-09 61.6 29.4 230 12-293 3-240 (316)
281 4hw6_A Hypothetical protein, I 98.6 8.7E-05 3E-09 66.3 27.2 212 63-289 140-372 (433)
282 3sov_A LRP-6, low-density lipo 98.6 0.00017 5.8E-09 61.5 27.7 202 63-293 36-240 (318)
283 3s94_A LRP-6, low-density lipo 98.6 0.00048 1.6E-08 64.6 39.5 357 61-454 39-420 (619)
284 2xe4_A Oligopeptidase B; hydro 98.6 8.9E-06 3E-10 78.5 21.4 193 205-454 175-395 (751)
285 3m0c_C LDL receptor, low-densi 98.6 0.0002 6.9E-09 68.7 30.2 188 75-291 397-589 (791)
286 3tc9_A Hypothetical hydrolase; 98.6 7.6E-05 2.6E-09 66.7 25.8 234 152-454 138-427 (430)
287 3tc9_A Hypothetical hydrolase; 98.5 0.00017 5.7E-09 64.5 27.7 157 63-235 138-301 (430)
288 4hw6_A Hypothetical protein, I 98.5 6.9E-05 2.4E-09 67.0 24.7 236 152-455 140-431 (433)
289 2xbg_A YCF48-like protein; pho 98.5 0.00039 1.3E-08 59.7 31.7 277 61-414 35-320 (327)
290 1n7d_A LDL receptor, low-densi 98.5 2.4E-06 8.2E-11 81.3 15.3 244 82-396 385-636 (699)
291 2xbg_A YCF48-like protein; pho 98.5 0.00044 1.5E-08 59.3 31.9 274 104-454 35-319 (327)
292 3ei3_A DNA damage-binding prot 98.4 0.0023 7.7E-08 64.5 36.9 116 62-181 514-635 (1158)
293 3kya_A Putative phosphatase; s 98.4 0.00043 1.5E-08 62.1 26.4 276 106-419 140-478 (496)
294 3p5b_L Low density lipoprotein 98.3 0.0017 5.7E-08 57.5 32.9 204 60-292 110-321 (400)
295 3kya_A Putative phosphatase; s 98.3 0.00074 2.5E-08 60.6 24.9 256 152-455 140-473 (496)
296 3m0c_C LDL receptor, low-densi 98.2 0.0037 1.3E-07 60.1 29.9 204 60-293 422-634 (791)
297 2ism_A Putative oxidoreductase 98.2 0.00066 2.3E-08 58.9 22.2 113 151-280 31-153 (352)
298 2p9w_A MAL S 1 allergenic prot 98.2 0.00048 1.7E-08 57.7 20.0 173 206-417 15-216 (334)
299 2p9w_A MAL S 1 allergenic prot 98.2 0.00035 1.2E-08 58.5 18.8 167 60-235 11-215 (334)
300 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0065 2.2E-07 57.0 46.0 157 62-237 80-239 (628)
301 1n7d_A LDL receptor, low-densi 98.1 5.2E-05 1.8E-09 72.2 14.0 222 128-420 386-618 (699)
302 3a9g_A Putative uncharacterize 98.0 0.0054 1.9E-07 53.1 25.1 244 151-445 29-330 (354)
303 2ism_A Putative oxidoreductase 98.0 0.0063 2.2E-07 52.7 27.4 258 105-404 31-333 (352)
304 3amr_A 3-phytase; beta-propell 98.0 0.0019 6.3E-08 54.7 19.8 188 73-290 40-262 (355)
305 2xzh_A Clathrin heavy chain 1; 98.0 0.0056 1.9E-07 50.9 29.7 271 81-418 47-334 (365)
306 3amr_A 3-phytase; beta-propell 97.9 0.0032 1.1E-07 53.3 20.4 191 9-234 39-262 (355)
307 3das_A Putative oxidoreductase 97.9 0.0089 3.1E-07 51.0 27.6 256 150-448 31-330 (347)
308 2g8s_A Glucose/sorbosone dehyd 97.8 0.014 4.6E-07 50.6 28.4 274 106-403 19-340 (353)
309 3pbp_A Nucleoporin NUP82; beta 97.7 0.005 1.7E-07 53.3 17.9 105 345-451 68-206 (452)
310 2vpj_A Kelch-like protein 12; 97.7 0.02 6.7E-07 48.3 22.6 232 117-420 14-282 (301)
311 2xzh_A Clathrin heavy chain 1; 97.7 0.019 6.5E-07 47.8 26.8 250 127-451 48-326 (365)
312 1bpo_A Protein (clathrin); cla 97.6 0.033 1.1E-06 48.5 30.8 271 81-418 46-333 (494)
313 3sre_A PON1, serum paraoxonase 97.5 0.033 1.1E-06 47.8 21.9 177 18-223 81-285 (355)
314 2vpj_A Kelch-like protein 12; 97.5 0.03 1E-06 47.2 24.7 151 72-239 14-188 (301)
315 2xn4_A Kelch-like protein 2; s 97.5 0.034 1.2E-06 46.9 23.5 66 354-421 204-281 (302)
316 3a9g_A Putative uncharacterize 97.5 0.043 1.5E-06 47.5 28.3 254 105-404 29-330 (354)
317 3ii7_A Kelch-like protein 7; p 97.4 0.044 1.5E-06 46.3 22.6 108 118-239 12-131 (306)
318 3s25_A Hypothetical 7-bladed b 97.4 0.043 1.5E-06 46.1 20.5 85 352-444 153-240 (302)
319 4asc_A Kelch repeat and BTB do 97.4 0.02 6.9E-07 48.7 18.5 106 119-239 6-130 (315)
320 3sre_A PON1, serum paraoxonase 97.4 0.055 1.9E-06 46.4 22.3 189 64-280 52-285 (355)
321 1bpo_A Protein (clathrin); cla 97.4 0.063 2.2E-06 46.7 27.1 250 127-451 47-325 (494)
322 1tl2_A L10, protein (tachylect 97.3 0.012 4.1E-07 45.9 14.0 147 262-449 41-202 (236)
323 3pbp_A Nucleoporin NUP82; beta 97.3 0.058 2E-06 46.9 19.5 158 69-232 28-209 (452)
324 2xn4_A Kelch-like protein 2; s 97.3 0.064 2.2E-06 45.2 22.4 149 73-239 16-186 (302)
325 1tl2_A L10, protein (tachylect 97.3 0.027 9.2E-07 44.0 15.5 117 151-285 41-157 (236)
326 1zgk_A Kelch-like ECH-associat 97.2 0.074 2.5E-06 45.0 22.6 150 72-239 70-244 (308)
327 3ott_A Two-component system se 97.1 0.21 7.3E-06 48.4 40.2 320 62-454 103-445 (758)
328 3ii7_A Kelch-like protein 7; p 97.1 0.1 3.5E-06 44.0 23.4 148 74-239 13-182 (306)
329 3das_A Putative oxidoreductase 97.1 0.11 3.8E-06 44.4 30.1 112 56-170 26-158 (347)
330 3ott_A Two-component system se 97.0 0.26 8.8E-06 47.8 40.2 329 62-454 191-542 (758)
331 4asc_A Kelch repeat and BTB do 97.0 0.12 4.1E-06 43.8 21.9 189 12-239 7-225 (315)
332 1xi4_A Clathrin heavy chain; a 97.0 0.21 7.3E-06 50.6 22.3 269 81-416 46-331 (1630)
333 2woz_A Kelch repeat and BTB do 97.0 0.14 4.8E-06 43.4 21.1 147 75-239 18-188 (318)
334 1xi4_A Clathrin heavy chain; a 96.9 0.14 4.8E-06 51.9 20.3 205 2-239 69-293 (1630)
335 1zgk_A Kelch-like ECH-associat 96.9 0.16 5.6E-06 42.8 24.5 189 72-292 24-241 (308)
336 2g8s_A Glucose/sorbosone dehyd 96.9 0.19 6.4E-06 43.4 29.6 115 63-182 19-173 (353)
337 2uvk_A YJHT; unknown function, 96.6 0.26 9E-06 42.6 18.7 66 117-185 19-98 (357)
338 1cru_A Protein (soluble quinop 96.5 0.42 1.4E-05 42.8 32.5 110 105-223 27-162 (454)
339 2be1_A Serine/threonine-protei 96.4 0.36 1.2E-05 41.1 17.6 202 11-240 11-236 (339)
340 2woz_A Kelch repeat and BTB do 96.4 0.35 1.2E-05 41.0 21.8 153 70-239 54-235 (318)
341 2zwa_A Leucine carboxyl methyl 96.4 0.71 2.4E-05 44.1 21.5 155 117-292 397-578 (695)
342 1cru_A Protein (soluble quinop 96.1 0.75 2.6E-05 41.2 32.6 106 62-170 27-162 (454)
343 2uvk_A YJHT; unknown function, 96.0 0.67 2.3E-05 40.0 21.8 95 72-172 19-128 (357)
344 2be1_A Serine/threonine-protei 95.9 0.28 9.6E-06 41.7 14.2 117 74-191 11-139 (339)
345 3s25_A Hypothetical 7-bladed b 95.8 0.68 2.3E-05 38.8 24.0 138 70-237 22-178 (302)
346 2zwa_A Leucine carboxyl methyl 95.7 1.5 5.2E-05 41.8 21.2 157 72-238 451-638 (695)
347 2wg3_C Hedgehog-interacting pr 95.2 1.6 5.6E-05 39.1 27.3 31 151-181 14-44 (463)
348 3q6k_A 43.2 kDa salivary prote 94.6 2 6.8E-05 37.1 18.2 193 174-404 124-342 (381)
349 3b7f_A Glycosyl hydrolase, BNR 91.1 7.4 0.00025 34.0 30.7 155 74-231 23-204 (394)
350 3qhy_B Beta-lactamase inhibito 90.3 6.8 0.00023 32.3 28.7 248 104-443 23-270 (282)
351 3sbq_A Nitrous-oxide reductase 90.2 11 0.00037 34.5 25.4 114 262-404 323-453 (638)
352 4hvt_A Ritya.17583.B, post-pro 89.0 16 0.00055 34.9 21.7 205 64-291 131-381 (711)
353 2wg3_C Hedgehog-interacting pr 88.2 14 0.00048 33.1 27.3 106 63-171 15-158 (463)
354 4gq2_M Nucleoporin NUP120; bet 87.5 9.9 0.00034 37.8 13.7 38 62-99 236-273 (950)
355 3b7f_A Glycosyl hydrolase, BNR 87.1 15 0.0005 32.0 30.1 80 151-232 177-259 (394)
356 3sbq_A Nitrous-oxide reductase 87.0 0.91 3.1E-05 41.1 5.4 78 151-236 323-409 (638)
357 4gq2_M Nucleoporin NUP120; bet 86.2 29 0.00099 34.6 17.1 37 344-381 237-273 (950)
358 3qhy_B Beta-lactamase inhibito 82.8 19 0.00064 29.7 25.1 183 63-291 25-207 (282)
359 4hvt_A Ritya.17583.B, post-pro 82.2 36 0.0012 32.5 21.3 70 344-415 351-429 (711)
360 4fhn_B Nucleoporin NUP120; pro 76.4 12 0.0004 38.3 9.6 37 345-382 240-276 (1139)
361 4fhn_B Nucleoporin NUP120; pro 76.0 5.1 0.00017 40.9 6.9 38 62-99 238-275 (1139)
362 3uc1_A DNA gyrase subunit A; D 74.3 39 0.0013 28.5 20.1 155 9-181 108-278 (327)
363 3zwu_A Alkaline phosphatase PH 74.3 14 0.00048 34.2 8.7 57 346-403 479-548 (592)
364 4a9v_A PHOX; hydrolase, beta-p 71.2 20 0.00067 32.9 8.6 58 345-403 478-548 (592)
365 1sqj_A OXG-RCBH, oligoxylogluc 70.5 81 0.0028 30.6 17.0 158 61-225 14-190 (789)
366 3f7f_A Nucleoporin NUP120; nuc 69.8 78 0.0027 30.1 17.5 36 345-383 224-259 (729)
367 3zwu_A Alkaline phosphatase PH 67.0 25 0.00084 32.6 8.6 60 63-124 477-548 (592)
368 1sqj_A OXG-RCBH, oligoxylogluc 65.3 1E+02 0.0036 29.9 20.7 70 150-223 14-83 (789)
369 3kci_A Probable E3 ubiquitin-p 58.5 91 0.0031 27.0 29.8 213 63-291 106-345 (389)
370 4a9v_A PHOX; hydrolase, beta-p 57.7 63 0.0022 29.7 9.3 61 62-125 476-549 (592)
371 3mvd_K Regulator of chromosome 57.5 99 0.0034 27.1 30.5 116 106-236 76-208 (423)
372 3f7f_A Nucleoporin NUP120; nuc 52.4 21 0.00073 33.8 5.5 36 62-99 222-257 (729)
373 3q6k_A 43.2 kDa salivary prote 51.3 1.2E+02 0.0041 26.2 22.0 155 129-291 124-306 (381)
374 3kci_A Probable E3 ubiquitin-p 43.5 1.6E+02 0.0055 25.4 31.7 172 106-291 106-293 (389)
375 3a0f_A Xyloglucanase; beta-pro 42.5 2.4E+02 0.0083 27.2 17.6 162 59-226 18-203 (763)
376 2cn3_A Xyloglucanase, beta-1,4 34.2 3.2E+02 0.011 26.2 19.4 198 62-282 23-264 (737)
377 1zi0_A DNA gyrase subunit A; b 34.0 2E+02 0.0069 23.8 25.8 212 117-374 2-226 (307)
378 3mez_B Mannose-specific lectin 32.9 1.1E+02 0.0039 20.6 9.3 46 389-443 59-104 (113)
379 3uc1_A DNA gyrase subunit A; D 32.8 2.2E+02 0.0075 23.9 28.9 209 10-237 3-230 (327)
380 1q47_A Semaphorin 3A; beta pro 31.6 1.2E+02 0.0041 27.4 6.9 55 357-411 423-487 (495)
381 3al9_A Plexin-A2; beta-propell 29.1 1.4E+02 0.0048 27.3 7.0 56 356-411 414-476 (539)
382 3mez_B Mannose-specific lectin 28.5 1.4E+02 0.0047 20.2 10.6 26 265-291 59-84 (113)
383 3nvq_A Semaphorin-7A; beta-pro 24.1 2.2E+02 0.0076 26.4 7.3 56 357-412 382-445 (590)
384 3ge2_A Lipoprotein, putative; 21.5 2E+02 0.007 19.7 4.8 35 383-420 80-114 (130)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.7e-58 Score=434.49 Aligned_cols=424 Identities=13% Similarity=0.155 Sum_probs=317.4
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccc-------------cccc----cccccccc----eEEe----eeeeEe
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTR-------------NFAL----RRRASEDL----VLRL----GIYAKL 57 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~-------------~~~~----~~~~~~~~----~~~~----~~~~~~ 57 (458)
.+.|+|++++||+|+.|++|+|||+.+++.... .|++ ++++..+. ...+ +....+
T Consensus 64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l 143 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL 143 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC
T ss_pred EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCccee
Confidence 467899999999999999999999976543211 1111 22222221 1221 344568
Q ss_pred ecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712 58 DKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 136 (458)
.+|.+.|++++|+|++. +|++|+.|++|++||..+++....+ .+|...|.+++|+| ++++|++++.|+.|++||+.
T Consensus 144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECC--CCCEEEEEECCCcEEEEECC
Confidence 89999999999999986 6999999999999999988877766 79999999999999 99999999999999999998
Q ss_pred cccceeeeecc-------ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc---------------
Q 012712 137 ERGGVETKLLG-------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI--------------- 194 (458)
Q Consensus 137 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------- 194 (458)
+++.... +. +|...|.+++|+|++ .+|++++.|++|++||+++++....+.....
T Consensus 221 ~g~~~~~--~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 221 DGTKTGV--FEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TCCEEEE--CBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCcEeee--eccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 8776544 32 799999999999999 6899999999999999998876554432100
Q ss_pred --------------------CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 195 --------------------DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 195 --------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
....+ |...|.+++|+|+ +++|++++.|+.|++||+.+++.. .
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~g--h~~~v~~l~~spd-g~~l~s~s~D~~v~~Wd~~~~~~~--------------~ 360 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYG--HNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISN--------------R 360 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECC--CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEE--------------E
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcC--CCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcee--------------e
Confidence 00112 4557999999998 789999999999999999876532 1
Q ss_pred ccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCC-CCccccccccccCCCCccccCCCCCCc---ccc
Q 012712 255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS-SPVSTRSEASEMGSDHTSAASPSTANT---DVR 330 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 330 (458)
.....|...|.+++|++++.++..+.++.+++|+............ ...........+++++..++....... ...
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 1224577899999999988666555577999999876543221000 000001122234444433222110000 001
Q ss_pred cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE--EEEeecCCceeeEEEecCCCCeEEEeecCCc
Q 012712 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHSTVLASSGIESD 408 (458)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 408 (458)
. ...+. |.. .+.+++| +|||++|++|+.|++|++||+.+++. +.. .+|...|++++|+|||++|++++.|++
T Consensus 441 ~-~~~~~-~~~--~v~~va~-spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~ 514 (611)
T 1nr0_A 441 K-LTEVP-ISY--NSSCVAL-SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK 514 (611)
T ss_dssp E-EEEEE-CSS--CEEEEEE-CTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred c-eeeee-cCC--CceEEEE-eCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC
Confidence 1 11222 333 3788998 99999999999999999999987754 234 679999999999999999999999999
Q ss_pred EEEecCCc-ccccc---cccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 409 IKILTPNA-ADRAT---LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 409 i~iw~~~~-~~~~~---~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
|++|++.+ ++... ...|...|.+++|+|||++||+++.|++|++|+.
T Consensus 515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 99999987 54443 2348899999999999999999999999999995
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.8e-57 Score=428.51 Aligned_cols=377 Identities=14% Similarity=0.200 Sum_probs=300.4
Q ss_pred CCCCCCCCC-eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 3 DASNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 3 ~~~~~~~~~-~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
.+.|+|+++ +|++|+.|++|++||..++++. ..+.+|.+.|.+++|+|+|++||+++.
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~---------------------~~l~~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK---------------------STFGEHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEE---------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCeEe---------------------eeeccccCceEEEEECCCCCEEEEEEC
Confidence 456888886 5999999999999998866544 458899999999999999999999999
Q ss_pred CCeEEEEECCCcceeeeecc------CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee------------
Q 012712 82 DRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET------------ 143 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~------------ 143 (458)
|++|++||+.+++....+.. +|.+.|.+++|+| ++++|++++.|++|++||+.+++....
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 99999999999888766633 7999999999999 999999999999999999987654321
Q ss_pred -----------------------------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712 144 -----------------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (458)
Q Consensus 144 -----------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (458)
..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~---- 363 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFP---- 363 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSS----
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecc----
Confidence 2245799999999999999 689999999999999999887654331
Q ss_pred CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc----CCC-CCC-CcCCC--------------
Q 012712 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD----FGQ-PAD-YFCPP-------------- 254 (458)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~-~~~-~~~~~-------------- 254 (458)
.+ +...+.+++|+++ ..+++++.|+.+++|+........... +.. +.. .+.+.
T Consensus 364 ---~~--h~~~v~~~~~s~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~ 436 (611)
T 1nr0_A 364 ---DV--HATMITGIKTTSK--GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436 (611)
T ss_dssp ---CS--CSSCEEEEEECTT--SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred ---cC--CcceEEEEEECCC--CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence 11 4557999999985 378899999999999987654322100 000 000 00000
Q ss_pred -----ccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712 255 -----NLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (458)
Q Consensus 255 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
.....+...+.+++|+|+|++|++++. +.|++||+....
T Consensus 437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~----------------------------------- 481 (611)
T 1nr0_A 437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS----------------------------------- 481 (611)
T ss_dssp EETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----------------------------------
T ss_pred EeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-----------------------------------
Confidence 000013456889999999999999985 479999987521
Q ss_pred cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-CeEEEE--eecCCceeeEEEecCCCCeEEEeec
Q 012712 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRV--IEADRHVVNCIEPHPHSTVLASSGI 405 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~ 405 (458)
...... .+|... |.+++| +|||++|++++.|++|++|++.+ ++++.. +.+|...|.+++|+|||++||+++.
T Consensus 482 -~~~~~~-~~h~~~--v~~v~f-spdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 482 -VSEVKT-IVHPAE--ITSVAF-SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp -EEEEEE-EECSSC--EEEEEE-CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred -eeeeec-cCCCCc--eEEEEE-CCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC
Confidence 011122 456653 899999 99999999999999999999987 666554 3459999999999999999999999
Q ss_pred CCcEEEecCCcccc---cccccc-cccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 406 ESDIKILTPNAADR---ATLPTN-IEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 406 d~~i~iw~~~~~~~---~~~~~~-~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
|++|++|++..+.. ..+.+| ...|.+++|+||++ |++++.|++|++|+.
T Consensus 557 D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred CCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 99999999987642 245577 78899999999999 999999999999985
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.5e-56 Score=418.03 Aligned_cols=371 Identities=22% Similarity=0.376 Sum_probs=314.5
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccc-----------ccc----ccccccccceEEe-----eeeeEeecCCCc
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTR-----------NFA----LRRRASEDLVLRL-----GIYAKLDKHRGC 63 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~-----------~~~----~~~~~~~~~~~~~-----~~~~~~~~h~~~ 63 (458)
+.++|++++|++++.|+.|++||.. ++.+.. .++ .+++++.++..++ +.+..+.+|...
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 264 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 264 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSC
T ss_pred eeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCC
Confidence 4578999999999999999999975 554433 111 2566667776665 567788999999
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 143 (458)
|.+++|+|++++|++++.|+.|++|+.. ++....+ .+|...|.+++|+| +++.|++++.|+.|++||..... ..
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~~~d~~i~~w~~~~~~-~~- 338 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQH-LQ- 338 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSCE-EE-
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCe-eE-
Confidence 9999999999999999999999999964 5555555 78999999999999 99999999999999999976543 33
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
.+.+|...+.+++|+|++ ..+++++.|+.|++||. +++....+.. +...|.+++|+|+ +++|++++
T Consensus 339 -~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~~~----------~~~~v~~~~~s~d-g~~l~~~~ 404 (577)
T 2ymu_A 339 -TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVRGVAFSPD-GQTIASAS 404 (577)
T ss_dssp -EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEEEC----------CSSCEEEEEECTT-SSCEEEEE
T ss_pred -EEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEecC----------CCCCeEEEEECCC-CCEEEEEe
Confidence 367899999999999999 68999999999999995 4444444432 4457999999998 78999999
Q ss_pred CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCC
Q 012712 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~ 302 (458)
.|+.|++||..... ......|...|.+++|+|++++|++++. +.+++|+...
T Consensus 405 ~d~~v~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----------- 457 (577)
T 2ymu_A 405 DDKTVKLWNRNGQL----------------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----------- 457 (577)
T ss_dssp TTSEEEEECTTCCE----------------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-----------
T ss_pred CCCEEEEEeCCCCE----------------EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-----------
Confidence 99999999964321 2334567889999999999999999885 5799999643
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 382 (458)
+....+.+|... |.+++| +|++++|++++.|+.|++||. +++++..+.
T Consensus 458 ----------------------------~~~~~~~~~~~~--v~~~~~-spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 458 ----------------------------QLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp ----------------------------CEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred ----------------------------CEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 345677788775 899998 999999999999999999995 788999999
Q ss_pred cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 383 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+|...|++++|+|++++||+++.|+.|++||........+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 506 ~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999999986655667889999999999999999999999999999997
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.4e-54 Score=405.22 Aligned_cols=325 Identities=21% Similarity=0.332 Sum_probs=279.1
Q ss_pred eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
+....+.+|.+.|.+++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+| +++.|++++.|+.|+
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~-~~~~~~v~~v~~~~--d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVNGVAFRP--DGQTIASASDDKTVK 287 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEE
T ss_pred cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEE-ecCCCCEEEEEEcC--CCCEEEEEeCCCEEE
Confidence 4567788999999999999999999999999999999964 5555555 78999999999999 999999999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
+|+.. ++... .+.+|...|.+++|+|++ ..+++++.|+.|++||+..... ..+.. +...+.+++|
T Consensus 288 ~w~~~-~~~~~--~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~-~~~~~----------~~~~v~~~~~ 352 (577)
T 2ymu_A 288 LWNRN-GQLLQ--TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHL-QTLTG----------HSSSVWGVAF 352 (577)
T ss_dssp EEETT-SCEEE--EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE-EEECC----------CSSCEEEEEE
T ss_pred EEeCC-CcEEE--EEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCee-EEEeC----------CCCCEEEEEE
Confidence 99964 33333 378899999999999999 6899999999999999865433 22221 4457999999
Q ss_pred CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEcc
Q 012712 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQD 290 (458)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~ 290 (458)
+|+ +.++++++.|+.|++||..... ......|...|.+++|+|++++|++++. +.|++|+..
T Consensus 353 s~~-g~~l~~~~~dg~v~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 353 SPD-GQTIASASDDKTVKLWNRNGQL----------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp CTT-SSEEEEEETTSEEEEEETTCCE----------------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCC-CCEEEEEeCCCEEEEEcCCCCE----------------EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 998 7899999999999999964321 2234457889999999999999999885 579999954
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
.+....+.+|... |.+++| +|++++|++++.|+.|++|
T Consensus 416 ---------------------------------------~~~~~~~~~~~~~--v~~~~~-s~d~~~l~~~~~d~~v~~w 453 (577)
T 2ymu_A 416 ---------------------------------------GQLLQTLTGHSSS--VWGVAF-SPDDQTIASASDDKTVKLW 453 (577)
T ss_dssp ---------------------------------------CCEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred ---------------------------------------CCEEEEecCCCCC--eEEEEE-CCCCCEEEEEcCCCEEEEE
Confidence 2345667778775 899998 9999999999999999999
Q ss_pred EecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCce
Q 012712 371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSI 450 (458)
Q Consensus 371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i 450 (458)
|. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|+........+.+|...|++++|+|||++|++++.|+.|
T Consensus 454 ~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 454 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp ET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence 96 67888999999999999999999999999999999999998766666888999999999999999999999999999
Q ss_pred EEEEE
Q 012712 451 LLFEW 455 (458)
Q Consensus 451 ~~w~~ 455 (458)
++||.
T Consensus 533 ~lwd~ 537 (577)
T 2ymu_A 533 KLWNR 537 (577)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99984
No 5
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-51 Score=402.39 Aligned_cols=418 Identities=8% Similarity=0.011 Sum_probs=294.9
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.|+|++++||+|+.||.|+||+..+++.. . ...|..+|.+++|+| |++|++++.|
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------~-~~~~~~~V~~l~fsp-g~~L~S~s~D 78 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------I-KLEDRSAIKEMRFVK-GIYLVVINAK 78 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTCEEE---------------------E-ECSSCCCEEEEEEET-TTEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcEEE---------------------E-EcCCCCCEEEEEEcC-CCEEEEEECc
Confidence 4678999999999999999999998865433 1 134788999999999 8899999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---------eeccccccce
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---------KLLGKHQGRA 153 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~---------~~~~~~~~~v 153 (458)
++|++||+.+++.+..+ .|...|++++|+| ++++|++|+.||.|++||+.++..... ..+.+|...|
T Consensus 79 ~~v~lWd~~~~~~~~~~--~~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTV--FVPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp CEEEEEETTTCSEEEEE--ECSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred CeEEEEECCCCcEEEEE--cCCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence 99999999999888777 3778999999999 999999999999999999987764311 1246789999
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC--------cceeecceEEEEECCCCCcEEEEecCC
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------NYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
.+++|+|++...+++++.||.| +||+++++....+..+...... ...+...|.+++|+|+ +.+|++++.|
T Consensus 155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~D 232 (902)
T 2oaj_A 155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHED 232 (902)
T ss_dssp CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEETT
T ss_pred EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEECC
Confidence 9999999765789999999999 9999998877666432100000 0012357999999998 7899999999
Q ss_pred CeEEEEecCCCccCCCccC-----CCCCCCcCCCccccccccceeEEEeC----CCC-cEEEEecCC------cEEEEEc
Q 012712 226 EYTRLYDIRKYKWDGSTDF-----GQPADYFCPPNLIGDEQVGITGLAFS----DQS-ELLVSYNDE------FIYLFTQ 289 (458)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~-~~l~~~~~~------~i~i~~~ 289 (458)
|.|++||+++++......+ ..+... .+. -...+...|.+++|+ |++ .+|++++.+ .+.+|++
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~-~~~-~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPD-YIR-DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTT-CCC-CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCc-CCC-CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 9999999988764321000 000000 000 000123456777773 332 345555322 4555553
Q ss_pred -----------------------------------------------------------------------cCCCCCCC-
Q 012712 290 -----------------------------------------------------------------------DMGLGPNP- 297 (458)
Q Consensus 290 -----------------------------------------------------------------------~~~~~~~~- 297 (458)
.++.....
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 22110000
Q ss_pred ------CCCCCcccc--------------------------------ccccccCCCCccccCCCCCCccc------ccCc
Q 012712 298 ------PPSSPVSTR--------------------------------SEASEMGSDHTSAASPSTANTDV------RIAP 333 (458)
Q Consensus 298 ------~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 333 (458)
+..+..... .....+++++..++....+.... ....
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ 470 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence 000000000 00001123333333322222111 1100
Q ss_pred --eee----c-----CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---------------------------
Q 012712 334 --QVY----K-----GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG--------------------------- 375 (458)
Q Consensus 334 --~~~----~-----~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--------------------------- 375 (458)
..+ . +|.. .|.+++| +|||++||+|+.||+|+|||+.++
T Consensus 471 ~~~~~~~~l~~~~~~~h~~--~V~svaf-spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKEL--AVDKISF-AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSC--CEEEEEE-ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred CCceEEeechhhcCCCCCC--ceeEEEe-cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 111 1 4554 4999999 999999999999999999999876
Q ss_pred ------------------eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc------ccc-cccccEE
Q 012712 376 ------------------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA------TLP-TNIEQVC 430 (458)
Q Consensus 376 ------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~------~~~-~~~~~v~ 430 (458)
+++..+.+|.+.|++++||||| +||+|+.|++|+|||+.+.... .+. +|...|+
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~ 626 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVT 626 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEE
T ss_pred cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceE
Confidence 2467888999999999999999 9999999999999999876542 343 7888999
Q ss_pred EEEEe-----cCC---cEEEeeecCCceEEEEE
Q 012712 431 FSIYS-----ADY---WWSKSQNFSCSILLFEW 455 (458)
Q Consensus 431 ~~~~s-----~d~---~~l~s~~~d~~i~~w~~ 455 (458)
+++|| ||| .+|++|+.|++|++||.
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 99999 886 89999999999999997
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.5e-51 Score=387.11 Aligned_cols=396 Identities=16% Similarity=0.180 Sum_probs=311.0
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEcccc----ccccccccccccccccceEEeeeeeEeecCCCc-eEEEEEec--CCC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELG----QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNT--DGD 74 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~~~ 74 (458)
-.+.|+|++++|++++ ++.|+|||++++ +.. ..+.+|.+. |++++|+| +++
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---------------------~~~~~h~~~~v~~~~~sp~~~~~ 79 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---------------------VQFTGHGSSVVTTVKFSPIKGSQ 79 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---------------------EEECTTTTSCEEEEEECSSTTCC
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---------------------eEEecCCCceEEEEEECcCCCCC
Confidence 3567899999999999 889999999977 444 458899999 99999999 999
Q ss_pred EEEEecCCCeEEEEECCCc--------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeeccccccee
Q 012712 75 ILISGSDDRRVILWDWKTE--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVE 142 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~~~~~ 142 (458)
+||+++.|+.|++||+.++ +....+ ..|...|.+++|+| ++++|++++.+ +.|.+|| .++...
T Consensus 80 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~ 154 (615)
T 1pgu_A 80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLG 154 (615)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred EEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence 9999999999999999755 444444 67999999999999 99999999987 7899998 344443
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec---ceEEEEECCCCCcEE
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV---NLNAIAIDPRNANLF 219 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l 219 (458)
. +.+|...|.+++|+|+++.++++++.|+.|++||+++++....+.. +.. .|.+++|+|++++++
T Consensus 155 ~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 155 E--VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------HHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp E--CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------SSCTTCCEEEEEECSTTCCEE
T ss_pred e--eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------cCCCCceEEEEEECCCCCCEE
Confidence 3 7889999999999999965899999999999999998877666542 333 699999999746899
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc---ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~ 295 (458)
++++.||.|++||+++++.... +.. .|...|.+++|+ ++++|++++ ++.+++||+.++...
T Consensus 223 ~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGEFLKY--------------IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEETTCCEEEEETTTCCEEEE--------------CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEeCCCeEEEEECCCCCEeEE--------------ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 9999999999999988763221 212 578899999999 999999888 558999999876433
Q ss_pred CCCCCCCccc---------------------------------------------c------------------------
Q 012712 296 NPPPSSPVST---------------------------------------------R------------------------ 306 (458)
Q Consensus 296 ~~~~~~~~~~---------------------------------------------~------------------------ 306 (458)
..+....... .
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~ 367 (615)
T 1pgu_A 288 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSM 367 (615)
T ss_dssp EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEE
T ss_pred EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhh
Confidence 2221110000 0
Q ss_pred -------ccccccCCCCccccCCCCC------------------------------------------------------
Q 012712 307 -------SEASEMGSDHTSAASPSTA------------------------------------------------------ 325 (458)
Q Consensus 307 -------~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 325 (458)
.....+ +++..++....+
T Consensus 368 ~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (615)
T 1pgu_A 368 HQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 446 (615)
T ss_dssp ECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred cCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccC
Confidence 000000 001111100000
Q ss_pred --------------------Cc------ccccCc-eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712 326 --------------------NT------DVRIAP-QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 326 --------------------~~------~~~~~~-~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 378 (458)
.. ...... ..+.+|.. .|.+++| +|++++|++++.||.|++||+.+++++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA--KPSYISI-SPSETYIAAGDVMGKILLYDLQSREVK 523 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS--CEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccC--ceEEEEE-CCCCCEEEEcCCCCeEEEeeCCCCcce
Confidence 00 000000 33344555 4889998 999999999999999999999999999
Q ss_pred EEeec-CCceeeEEEecC----------CCCeEEEeecCCcEEEecCCcc-ccc-ccccccccEEEEEEecCCcEEEeee
Q 012712 379 RVIEA-DRHVVNCIEPHP----------HSTVLASSGIESDIKILTPNAA-DRA-TLPTNIEQVCFSIYSADYWWSKSQN 445 (458)
Q Consensus 379 ~~~~~-~~~~v~~~~~s~----------~~~~l~s~~~d~~i~iw~~~~~-~~~-~~~~~~~~v~~~~~s~d~~~l~s~~ 445 (458)
..+.+ |...|++++|+| ++++|++++.||.|++|++.++ +.. .+..|...|++++|+|++. |++++
T Consensus 524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence 99988 999999999999 9999999999999999999986 343 6778999999999999999 99999
Q ss_pred cCCceEEEEEe
Q 012712 446 FSCSILLFEWL 456 (458)
Q Consensus 446 ~d~~i~~w~~~ 456 (458)
.|+.|++|+.-
T Consensus 603 ~d~~v~iw~~~ 613 (615)
T 1pgu_A 603 ADACIKRWNVV 613 (615)
T ss_dssp TTSCEEEEEEC
T ss_pred CCceEEEEeee
Confidence 99999999974
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-51 Score=366.53 Aligned_cols=308 Identities=16% Similarity=0.244 Sum_probs=264.4
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
...+.+|.++|++++|+|++++|++|+.|++|++||+.+++....+ .+|...|.+++|+| ++++|++|+.|+.|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~--~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH--SGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Confidence 5578899999999999999999999999999999999999887777 79999999999999 99999999999999999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
|+.+.+.+.. +.+|...|.+++|+|++ ..|++++.|+.|++||++++.+...+.. +...+.++.++|
T Consensus 178 d~~~~~~~~~--~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------h~~~v~~~~~~~ 244 (410)
T 1vyh_C 178 DFQGFECIRT--MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTG----------HREWVRMVRPNQ 244 (410)
T ss_dssp ETTSSCEEEC--CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEECT
T ss_pred eCCCCceeEE--EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeC----------CCccEEEEEECC
Confidence 9988776655 78999999999999999 6899999999999999999988776653 445789999999
Q ss_pred CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCC
Q 012712 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (458)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~ 293 (458)
+ +.++++|+.|+.|++||+++.+. ......|...|.+++|+|++.+....
T Consensus 245 ~-g~~l~s~s~D~~v~vwd~~~~~~---------------~~~~~~h~~~v~~~~~~~~~~~~~~~-------------- 294 (410)
T 1vyh_C 245 D-GTLIASCSNDQTVRVWVVATKEC---------------KAELREHRHVVECISWAPESSYSSIS-------------- 294 (410)
T ss_dssp T-SSEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECCSCGGGGGG--------------
T ss_pred C-CCEEEEEcCCCeEEEEECCCCce---------------eeEecCCCceEEEEEEcCcccccchh--------------
Confidence 8 78999999999999999987653 22344577889999999986421100
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
...+ ...... .+.|.+|++|+.|+.|++||+.
T Consensus 295 -----------------------------------------~~~~------~~~~~~-~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 295 -----------------------------------------EATG------SETKKS-GKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp -----------------------------------------GCCS------CC--------CCEEEEEETTSEEEEEETT
T ss_pred -----------------------------------------hhcc------cccccc-CCCCCEEEEEeCCCeEEEEECC
Confidence 0000 001112 4568899999999999999999
Q ss_pred CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILL 452 (458)
Q Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~ 452 (458)
+++++..+.+|...|.+++|+|++++|++++.|+.|++||+.++++. .+..|...|++++|+|++.+|++|+.|+.|++
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999999999999999999999999999887665 66788899999999999999999999999999
Q ss_pred EEE
Q 012712 453 FEW 455 (458)
Q Consensus 453 w~~ 455 (458)
|+.
T Consensus 407 W~~ 409 (410)
T 1vyh_C 407 WEC 409 (410)
T ss_dssp EC-
T ss_pred EeC
Confidence 984
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-51 Score=422.15 Aligned_cols=410 Identities=15% Similarity=0.174 Sum_probs=316.3
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.|+|++++|++|+.||.|+|||+.+++.+ ..+.+|.+.|.+++|+|++++||+++.|
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~d 678 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGEKL---------------------LDIKAHEDEVLCCAFSSDDSYIATCSAD 678 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCEE---------------------EEeccCCCCEEEEEEecCCCEEEEEeCC
Confidence 3568999999999999999999999988766 4578999999999999999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
+.|++||+.+++.+..+ .+|...|.+++|+|..++..+++++.||.|++||+.+++.... +.+|...|.+++|+|++
T Consensus 679 ~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~sp~~ 755 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT--MFGHTNSVNHCRFSPDD 755 (1249)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE--ECCCSSCEEEEEECSST
T ss_pred CeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe--ecCCCCCEEEEEEecCC
Confidence 99999999999988887 7899999999999944455899999999999999998887655 77899999999999999
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCC----------------------------------------C-----
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD----------------------------------------R----- 197 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------------------------~----- 197 (458)
..+++++.||.|++||+++++....+....... .
T Consensus 756 -~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 756 -ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp -TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred -CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 689999999999999998876544332111000 0
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (458)
....+...+.+++|+|+ +.++++++.||.|++||+.++.. ......|...|.+++|+|+|++|+
T Consensus 835 ~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLK---------------VADCRGHLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp EECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEE
T ss_pred EcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCce---------------eeecCCCccceEEEEECCCCCEEE
Confidence 00013457889999997 68999999999999999987653 233456788999999999999999
Q ss_pred Eec-CCcEEEEEccCCCCCCCCCCCC-----------------------------------ccccccccccCCCCccccC
Q 012712 278 SYN-DEFIYLFTQDMGLGPNPPPSSP-----------------------------------VSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 278 ~~~-~~~i~i~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~ 321 (458)
+++ ++.+++|++............. .........+++++..++.
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence 988 5589999976432111110000 0001112234444444443
Q ss_pred CCCCC------cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec----------------------
Q 012712 322 PSTAN------TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK---------------------- 373 (458)
Q Consensus 322 ~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~---------------------- 373 (458)
...+. .........+.+|... |.+++| +|+|++|++++.||.|++||+.
T Consensus 979 g~~~g~i~i~d~~~~~~~~~~~~h~~~--v~~l~~-s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 1055 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFSSGVGHKKA--VRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD 1055 (1249)
T ss_dssp EETTSCCEEEETTTTSCEEECCCCSSC--CCCEEE-CSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSS
T ss_pred EcCCCCEEEEEcCCCceeeecccCCCc--eEEEEE-CCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence 32221 1123344455566553 667776 7777777777777666666654
Q ss_pred ------------------CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEE
Q 012712 374 ------------------GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIY 434 (458)
Q Consensus 374 ------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~ 434 (458)
+++.+..+.+|.+.|.+++|+|++++|++++.|++|++|++.+++.. .+..|...|++++|
T Consensus 1056 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~ 1135 (1249)
T 3sfz_A 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135 (1249)
T ss_dssp SEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEE
T ss_pred CcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEE
Confidence 44455566778889999999999999999999999999999988665 66788999999999
Q ss_pred ecCCcEEEeeecCCceEEEEEe
Q 012712 435 SADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 435 s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+|||++|++++.||.|++||.-
T Consensus 1136 s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1136 SLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp CSSSSEEEEEETTSCCCEEESS
T ss_pred CCCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999963
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-49 Score=349.02 Aligned_cols=293 Identities=18% Similarity=0.277 Sum_probs=253.0
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
++..+++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+ ..|...|.+++|+| ++++|++++.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAP--SGNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECC--CCCEEEEEeCCCeE
Confidence 4567789999999999999999999999999999999999999887777 68999999999999 99999999999999
Q ss_pred EEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 131 RHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 131 ~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
++|++.+... .....+.+|...|.++.|++++ . +++++.|+.|++||+++++....+.. +...|.+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s~s~d~~i~~wd~~~~~~~~~~~~----------h~~~v~~ 189 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVTSSGDTTCALWDIETGQQTTTFTG----------HTGDVMS 189 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-E-EEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCC-c-EEEEECCCcEEEEECCCCcEEEEEcC----------CCCceEE
Confidence 9999987542 2234477899999999999987 4 88999999999999999887666542 4457999
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~ 287 (458)
++|+|+ +.++++|+.|+.|++||+++++. ......|...|.+++|+|++++|++++ ++.|++|
T Consensus 190 ~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 190 LSLAPD-TRLFVSGACDASAKLWDVREGMC---------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp EEECTT-SSEEEEEETTSCEEEEETTTCSE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEECCC-CCEEEEEeCCCcEEEEECCCCee---------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 999997 78999999999999999987653 233456788999999999999999998 5589999
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i 367 (458)
|+.+. .....+..+.....+.+++| +|+|++|++|+.||.|
T Consensus 254 d~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 254 DLRAD--------------------------------------QELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNC 294 (340)
T ss_dssp ETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSEE
T ss_pred ECCCC--------------------------------------cEEEEEccCCcccceEEEEE-CCCCCEEEEECCCCeE
Confidence 98763 22222322222224889998 9999999999999999
Q ss_pred EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|+.|+|||
T Consensus 295 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999997
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-50 Score=346.42 Aligned_cols=291 Identities=21% Similarity=0.314 Sum_probs=252.4
Q ss_pred eeeEeecCCCceEEEEEecC----CCEEEEecCCCeEEEEECCCcceeee-eccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 53 IYAKLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
+.+.+++|.+.|++++|+|+ +.+|+||+.|++|+||++..++.... .+.+|...|.+++|+| ++..+++++.|
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~~l~s~s~D 101 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLD 101 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSSEEEEEETT
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCCEEEEEeCC
Confidence 34567899999999999985 57999999999999999987654322 2479999999999999 99999999999
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
+.|++||+.+++.+.. +..|...+.+++|+|++ .+|++++.|+.|++||+++++....+.. +...+.
T Consensus 102 ~~i~lWd~~~~~~~~~--~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~----------~~~~v~ 168 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKS--IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDT----------RGKFIL 168 (321)
T ss_dssp SEEEEEETTTTEEEEE--EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEEC----------SSSCEE
T ss_pred CcEEEEECCCCCEEEE--EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecC----------CCceEE
Confidence 9999999998877655 67788899999999999 6899999999999999999887665543 334689
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYL 286 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i 286 (458)
+++|+|+ +++|++|+.||.|++||+++++.. .....|..+|.+++|+|++++|++++. +.|++
T Consensus 169 ~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~---------------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~i 232 (321)
T 3ow8_A 169 SIAYSPD-GKYLASGAIDGIINIFDIATGKLL---------------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232 (321)
T ss_dssp EEEECTT-SSEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEEECCC-CCEEEEEcCCCeEEEEECCCCcEE---------------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEE
Confidence 9999998 789999999999999999887532 234457889999999999999999985 58999
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~ 366 (458)
||+.+ ......+.+|... |.+++| +|++++|++++.|++
T Consensus 233 wd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 233 YDVQH--------------------------------------ANLAGTLSGHASW--VLNVAF-CPDDTHFVSSSSDKS 271 (321)
T ss_dssp EETTT--------------------------------------CCEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSC
T ss_pred EECCC--------------------------------------cceeEEEcCCCCc--eEEEEE-CCCCCEEEEEeCCCc
Confidence 99976 3445677888875 899998 999999999999999
Q ss_pred EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
|++||+.+++++.++.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 272 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 272 VKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999963
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-50 Score=355.16 Aligned_cols=290 Identities=16% Similarity=0.187 Sum_probs=235.5
Q ss_pred ecCCCceEEEEEecCCCEEEEecC------CCeEEEEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 58 DKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
.+|++.|++++|||||++||+|+. |+.|++|+..++.....+ ..+|...|.+++|+| ++. +++++.||
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~-~l~~s~dg 115 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKG-ILVASDSG 115 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTE-EEEEETTS
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCC-EEEEECCC
Confidence 479999999999999999999997 788999998776543322 246889999999999 876 45677899
Q ss_pred cEEEeecccccceee--eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 129 QVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
.|++||+.+++.... ....+|...|++++|+|++ .+|++++.|+.|++||+++++....+.. +...|
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~----------h~~~v 184 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNA----------HSSEV 184 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCE
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCCE
Confidence 999999988765432 2345799999999999999 6899999999999999999887766653 45579
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (458)
.+++|+|++..++++++.|+.|++||+++++....
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--------------------------------------------- 219 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--------------------------------------------- 219 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---------------------------------------------
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeee---------------------------------------------
Confidence 99999998667899999999999999987642110
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCC
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCG 365 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg 365 (458)
..+..+.. .+.+++| +|+ +++|++|+.|+
T Consensus 220 -----------------------------------------------~~~~~~~~--~v~~v~~-sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 220 -----------------------------------------------IDFCASDT--IPTSVTW-HPEKDDTFACGDETG 249 (357)
T ss_dssp -----------------------------------------------CCCTTCCS--CEEEEEE-CTTSTTEEEEEESSS
T ss_pred -----------------------------------------------eeeccccc--cccchhh-hhcccceEEEeeccc
Confidence 00011111 2678888 887 56889999999
Q ss_pred eEEEEEecCCeEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccccccccccccEEEEEEec-CCcEEEe
Q 012712 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSA-DYWWSKS 443 (458)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s 443 (458)
.|++||+.+++++..+.+|...|++++|+|++ ++||+++.|++|+|||+.+++.....+|...|++++|+| |+.+|++
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence 99999999999999999999999999999987 579999999999999999999888889999999999999 7899999
Q ss_pred eecCCceEEEEEe
Q 012712 444 QNFSCSILLFEWL 456 (458)
Q Consensus 444 ~~~d~~i~~w~~~ 456 (458)
++.|++|++|+.-
T Consensus 330 ~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 330 VGWDHKVLHHHLP 342 (357)
T ss_dssp EETTSCEEEEECC
T ss_pred EcCCCeEEEEECC
Confidence 9999999999963
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.3e-50 Score=411.03 Aligned_cols=426 Identities=19% Similarity=0.237 Sum_probs=336.1
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEcccccccccc-----------ccc------cccccccceEEe------eeeeEeec
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRN-----------FAL------RRRASEDLVLRL------GIYAKLDK 59 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~-----------~~~------~~~~~~~~~~~~------~~~~~~~~ 59 (458)
.+.|+|++++|++|+.|+.|+|||+.+++.+... |++ +++++.|+..++ +....+.+
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence 4568999999999999999999999999877552 111 556667776655 46678889
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeee-----------------------------------------
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS----------------------------------------- 98 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------------- 98 (458)
|.+.|++++|+|++++|++++.||.|++||+.+++....
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 999999999999999999999999999999876643222
Q ss_pred -------------eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712 99 -------------FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (458)
Q Consensus 99 -------------~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (458)
+..+|...|.+++|+| ++..+++++.||.|++|++.++..... +.+|...|.+++|+|++ ..
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg-~~ 896 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSP--YDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVMFSPDG-SS 896 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECS--STTEEEEECSSSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeee--cCCCccceEEEEECCCC-CE
Confidence 1226788999999999 999999999999999999988776654 78899999999999999 68
Q ss_pred EEEecCCCeEEEEeCCCCCcc-----------------------------------------------c-----------
Q 012712 166 FYTCGEDGLVQHFDLRTGAAT-----------------------------------------------E----------- 187 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~-----------------------------------------------~----------- 187 (458)
+++++.||.|++||+.+.... .
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 999999999999996531000 0
Q ss_pred ----------eeeecccCC-CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712 188 ----------LFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (458)
Q Consensus 188 ----------~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (458)
.+....... .....+...|.+++|+|+ +.++++++.||.|++||+.+++.. .
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~----------------~ 1039 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYV----------------F 1039 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEE----------------C
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceE----------------E
Confidence 000000000 000114557899999998 789999999999999999887632 2
Q ss_pred ccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC------cccc
Q 012712 257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN------TDVR 330 (458)
Q Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 330 (458)
...|...+.+++|+|++.+++.+.++.+++||+.++.....+..+... .....+++++..++....+. ....
T Consensus 1040 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT--VLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC--CCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc--EEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 335678999999999988777777889999999988765554433322 23345666766665544432 2334
Q ss_pred cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe---------ecCCceeeEEEecCCCCeEE
Q 012712 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI---------EADRHVVNCIEPHPHSTVLA 401 (458)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~ 401 (458)
.....+.+|... |.+++| +|+|++|++|+.||.|++||+.+++.+..+ ..|.+.|++++|+||+++|+
T Consensus 1118 ~~~~~l~~h~~~--v~~~~~-s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 1194 (1249)
T 3sfz_A 1118 SPLHELKGHNGC--VRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194 (1249)
T ss_dssp SCSBCCCCCSSC--EEEEEE-CSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEE
T ss_pred ceeeeeccCCCc--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEE
Confidence 566777888875 899999 999999999999999999999998877655 57889999999999999999
Q ss_pred EeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712 402 SSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV 457 (458)
Q Consensus 402 s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 457 (458)
+++ |.|++||+.+++.. .+..|...|.+++|+|||.+|++++.||.|++|+.++
T Consensus 1195 s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1195 SAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp EES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCCC
T ss_pred ECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeecC
Confidence 886 89999999988766 5566888899999999999999999999999999753
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-49 Score=344.91 Aligned_cols=287 Identities=17% Similarity=0.192 Sum_probs=249.9
Q ss_pred cCCCcceeEEEEccC--CCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712 101 SGHNDNVFQAKIMPF--TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~--~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (458)
.+|.+.|++++|+|. .++.+|++|+.|++|++|++...+......+.+|...|.+++|+|++ .++++++.|+.|++|
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLW 107 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEE
Confidence 689999999999971 13568999999999999999877655555588999999999999999 689999999999999
Q ss_pred eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
|+++++....+.. +...+.+++|+|+ +++|++++.+|.|++||+++.+.. ....
T Consensus 108 d~~~~~~~~~~~~----------~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~~~~~---------------~~~~ 161 (321)
T 3ow8_A 108 DLENGKQIKSIDA----------GPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKE---------------YSLD 161 (321)
T ss_dssp ETTTTEEEEEEEC----------CTTCCCCEEECTT-SSEEEEECTTSEEEEEETTTCSEE---------------EEEE
T ss_pred ECCCCCEEEEEeC----------CCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCCCcee---------------EEec
Confidence 9999987766653 3346788999998 789999999999999999876532 2233
Q ss_pred ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 259 DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
.+...+.+++|+|++++|++++ ++.|++||+.+ .+....+.
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--------------------------------------~~~~~~~~ 203 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--------------------------------------GKLLHTLE 203 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------------------------------TEEEEEEC
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC--------------------------------------CcEEEEEc
Confidence 4567899999999999999998 55899999987 34566777
Q ss_pred CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
+|... |.+++| +|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 204 ~h~~~--v~~l~~-spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 204 GHAMP--IRSLTF-SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp CCSSC--CCEEEE-CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ccCCc--eeEEEE-cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 88775 899999 999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 418 DRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 418 ~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
++. .+..|...|.+++|+|+|.+|++++.|+.|++||.
T Consensus 281 ~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 765 66789999999999999999999999999999995
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-49 Score=341.24 Aligned_cols=295 Identities=17% Similarity=0.271 Sum_probs=252.1
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
++++.+++.+|.+.|.+++|+|++++|++++.|++|++||+.++..+..+ ..|..+|.+++|+| ++++|++++.|+.
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeC--CCCEEEEECCCCE
Confidence 34567789999999999999999999999999999999999999887777 78999999999999 9999999999999
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc-ceeeecccCCCCcceeecceEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
|++||+.+++.+.. +.+|...|.+++|+|++ .+|++++.|++|++||++++... ..+. + +...|.+
T Consensus 79 i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~--------~--h~~~v~~ 145 (304)
T 2ynn_A 79 IRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFE--------G--HEHFVMC 145 (304)
T ss_dssp EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEEC--------C--CCSCEEE
T ss_pred EEEEECCCCcEEEE--EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhc--------c--cCCcEEE
Confidence 99999998887655 78899999999999999 68999999999999999877433 2222 1 4557999
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC--CCcEEEEec-CCcEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIY 285 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~~~i~ 285 (458)
++|+|+++.+|++|+.|+.|++||+++... ......++...+..+.|+| ++.+|++++ ++.|+
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSC--------------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 999996578999999999999999976542 1223344567888999987 678999988 55899
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg 365 (458)
+||+.+ ......+.+|... |.+++| +|++++|++|+.||
T Consensus 212 iWd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~s~Dg 250 (304)
T 2ynn_A 212 IWDYQT--------------------------------------KSCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDG 250 (304)
T ss_dssp EEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTS
T ss_pred EEeCCC--------------------------------------CccceeeCCCCCC--EEEEEE-CCCCCEEEEEcCCC
Confidence 999987 4567788888875 889998 99999999999999
Q ss_pred eEEEEEecCCeEEEEeecCCceeeEEEecCCCC--eEEEeecCCcEEEecCCc
Q 012712 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNA 416 (458)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~iw~~~~ 416 (458)
+|++||+.++++++++..|...+.+++|+|++. ++++|+ |..+.+|++..
T Consensus 251 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 999999999999999999999999999999886 466666 55577777654
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-50 Score=357.42 Aligned_cols=307 Identities=19% Similarity=0.301 Sum_probs=256.4
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
+.+.+++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+ ..|...|.+++|+| ++++|++++.|+.+
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~--~g~~las~~~d~~v 132 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP--NGQSVACGGLDSAC 132 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECT--TSSEEEECCSSSCC
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCcE
Confidence 4566789999999999999999999999999999999999999887777 78999999999999 99999999999999
Q ss_pred EEeeccccc-----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 131 RHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 131 ~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
++|++.+.. ......+.+|...+.++.|.|+++..|++++.|++|++||+++++....+..... .+ +...
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~---~~--h~~~ 207 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP---SG--HTAD 207 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS---SS--CCSC
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC---CC--CccC
Confidence 999997532 1122347789999999999998767899999999999999999987765532211 12 4557
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i 284 (458)
+.+++|+|.++++|++|+.|+.|++||++.... ......+|...|.+++|+|++++|++++ ++.|
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSR--------------AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--------------CCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--------------ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 999999885578999999999999999985421 2334566889999999999999999998 4589
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc-----ceeeeeEEEEecCCCcEEE
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-----NCVTVKGVNFFGPKCEYVV 359 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~s~~~~~l~ 359 (458)
++||+.++.. ...+..+. ....+.+++| +|+|++|+
T Consensus 274 ~lwd~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~ 314 (380)
T 3iz6_a 274 RLFDMRTGHQ--------------------------------------LQVYNREPDRNDNELPIVTSVAF-SISGRLLF 314 (380)
T ss_dssp EEEETTTTEE--------------------------------------EEEECCCCSSSCCSSCSCSEEEE-CSSSSEEE
T ss_pred EEEECCCCcE--------------------------------------EEEecccccccccccCceEEEEE-CCCCCEEE
Confidence 9999987432 11221111 0113788998 99999999
Q ss_pred EecCCCeEEEEEecCCeEEEEe----ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 360 SGSDCGRIFIWKKKGGELIRVI----EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 360 ~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
+|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|++|++|+.|++|++|++...+
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999888877 6799999999999999999999999999999998654
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.3e-49 Score=345.04 Aligned_cols=295 Identities=15% Similarity=0.246 Sum_probs=251.9
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
++..+++.+|.+.|++++|+|++++|+||+.|++|++||..+++....+ ..|...|.+++|+| ++..|++++.|+.+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~lasg~~d~~i 130 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAP--SGCAIACGGLDNKC 130 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECT--TSSEEEEESTTSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCCE
Confidence 3567889999999999999999999999999999999999988887776 67889999999999 99999999999999
Q ss_pred EEeecccccc----eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 131 RHAQILERGG----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 131 ~vw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
++|++..... .....+..|...|.+++|+|++ ..|++++.|++|++||+++++....+.. +...|
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~----------h~~~v 199 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHG----------HGADV 199 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCE
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcC----------CCCCe
Confidence 9999865421 1223366799999999999998 6789999999999999999988776653 44578
Q ss_pred EEEEECCC-CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712 207 NAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (458)
Q Consensus 207 ~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i 284 (458)
.+++|+|+ ++++|++|+.||.|++||+++++. ......|...|.+++|+|++.+|++++ ++.|
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v 264 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---------------VQAFETHESDVNSVRYYPSGDAFASGSDDATC 264 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeE
Confidence 99999885 257999999999999999998753 223456788999999999999999998 5589
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
++||+... .....+..+.....+.+++| +|++++|++|+.|
T Consensus 265 ~lwd~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~g~~d 305 (354)
T 2pbi_B 265 RLYDLRAD--------------------------------------REVAIYSKESIIFGASSVDF-SLSGRLLFAGYND 305 (354)
T ss_dssp EEEETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETT
T ss_pred EEEECCCC--------------------------------------cEEEEEcCCCcccceeEEEE-eCCCCEEEEEECC
Confidence 99998763 12223332222223788898 9999999999999
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
++|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.|++|++|+
T Consensus 306 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999999999999999999999996
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-49 Score=344.70 Aligned_cols=301 Identities=16% Similarity=0.243 Sum_probs=237.1
Q ss_pred EeeeeeEeecCCC-ceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712 50 RLGIYAKLDKHRG-CVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (458)
Q Consensus 50 ~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 126 (458)
.+++++++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++... ..+..+|...|.+++|+| ++++|++++.
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEEC
Confidence 3466788999988 9999999999999999999999999999877543 233468999999999999 9999999999
Q ss_pred CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
|+.+++|++..+.......+.+|...|.+++|+|++ ++|++++.|+.|++||++++.......... + +...|
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----~--h~~~v 153 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLN-----S--HTQDV 153 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEEC-----C--CCSCE
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEec-----C--cCCCe
Confidence 999999999876544445588999999999999999 789999999999999998775433222111 1 44568
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (458)
.+++|+|+ +.+|++++.|+.|++||.+..+.
T Consensus 154 ~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~------------------------------------------------ 184 (345)
T 3fm0_A 154 KHVVWHPS-QELLASASYDDTVKLYREEEDDW------------------------------------------------ 184 (345)
T ss_dssp EEEEECSS-SSCEEEEETTSCEEEEEEETTEE------------------------------------------------
T ss_pred EEEEECCC-CCEEEEEeCCCcEEEEEecCCCE------------------------------------------------
Confidence 88999997 67888899999999998765421
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~ 366 (458)
.....+.+|... |.+++| +|+|++|++++.|++
T Consensus 185 --------------------------------------------~~~~~~~~h~~~--v~~l~~-sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 185 --------------------------------------------VCCATLEGHEST--VWSLAF-DPSGQRLASCSDDRT 217 (345)
T ss_dssp --------------------------------------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSC
T ss_pred --------------------------------------------EEEEEecCCCCc--eEEEEE-CCCCCEEEEEeCCCe
Confidence 001223334442 666776 777777777777777
Q ss_pred EEEEEecC---------------CeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc----------
Q 012712 367 IFIWKKKG---------------GELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA---------- 420 (458)
Q Consensus 367 i~iwd~~~---------------~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~---------- 420 (458)
|++|+... .+++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+...
T Consensus 218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 77776522 133455555 8889999999999999999999999999998754211
Q ss_pred ccccccccEEEEEEecCC-cEEEeeecCCceEEEEEe
Q 012712 421 TLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 421 ~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~~~ 456 (458)
...+|...|.+++|+|++ .+||+++.||.|++|+.-
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 234788899999999998 599999999999999974
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=347.33 Aligned_cols=289 Identities=13% Similarity=0.149 Sum_probs=234.0
Q ss_pred ecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC-------cc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-------ER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
..|...|.+++|+|||++|++++ |+++++||... .. ........|...|.+++|+| ++ .|++++.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~-~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG--ER-GILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET--TT-EEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC--CC-eEEEEECC
Confidence 35778899999999999999887 66777776321 00 00111124567899999999 75 68899999
Q ss_pred CcEEEeecccccceee--eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 128 GQVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
|.|++||+.+++.... ....+|...|++++|+|++ .+|++++.|+.|++||+++++.+..+.. |...
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~----------h~~~ 171 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRA----------HAAQ 171 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSC
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC----------cCCc
Confidence 9999999998876543 2355899999999999999 7899999999999999999987776653 4557
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEE
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~ 285 (458)
|.+++|+|++..+|++++.|+.|++||+++++... .+..
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------~~~~---------------- 210 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-------------------------QIGC---------------- 210 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-------------------------ECC-----------------
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceee-------------------------eeec----------------
Confidence 99999999866789999999999999998764210 0000
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDC 364 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~d 364 (458)
..+.. .+.+++| +| ++++|++|+.|
T Consensus 211 ---------------------------------------------------~~~~~--~~~~~~~-~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 211 ---------------------------------------------------SAPGY--LPTSLAW-HPQQSEVFVFGDEN 236 (344)
T ss_dssp ------------------------------------------------------CC--CEEEEEE-CSSCTTEEEEEETT
T ss_pred ---------------------------------------------------ceeec--cceeeee-cCCCCcceEEeccC
Confidence 00111 2677888 77 56789999999
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCc-EEE
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYW-WSK 442 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 442 (458)
|+|++||+.+++++.++.+|...|++++|+|++ ++||+|+.|++|+|||+.++++..+.+|.+.|++++|+|++. +|+
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEE
Confidence 999999999999999999999999999999998 579999999999999999999888999999999999999995 678
Q ss_pred eeecCCceEEEEEe
Q 012712 443 SQNFSCSILLFEWL 456 (458)
Q Consensus 443 s~~~d~~i~~w~~~ 456 (458)
+++.|++|++|++-
T Consensus 317 s~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 317 TVGWDHQVVHHVVP 330 (344)
T ss_dssp EEETTSCEEEEECC
T ss_pred EEcCCCeEEEEECC
Confidence 99999999999863
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.9e-50 Score=358.50 Aligned_cols=296 Identities=20% Similarity=0.336 Sum_probs=250.7
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.|+|++++|++|+.||+|+|||+.+++.. +.+.+|.+.|.+++|+|++++|++|+.|
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------~~l~~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTLKGHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------EEEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence 4568999999999999999999999988766 4588999999999999999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
++|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.++..+.. +.+|...|.++.++|++
T Consensus 172 ~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTM-HGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDG 246 (410)
T ss_dssp SCCCEEETTSSCEEECC-CCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTS
T ss_pred CeEEEEeCCCCceeEEE-cCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCC
Confidence 99999999998887777 79999999999999 999999999999999999998877655 78899999999999999
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (458)
.++++++.|+.|++||+++++....+.. +...|.+++|+|++ .+.......
T Consensus 247 -~~l~s~s~D~~v~vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~-~~~~~~~~~----------------- 297 (410)
T 1vyh_C 247 -TLIASCSNDQTVRVWVVATKECKAELRE----------HRHVVECISWAPES-SYSSISEAT----------------- 297 (410)
T ss_dssp -SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECCSC-GGGGGGGCC-----------------
T ss_pred -CEEEEEcCCCeEEEEECCCCceeeEecC----------CCceEEEEEEcCcc-cccchhhhc-----------------
Confidence 7899999999999999999887666543 44579999999973 221100000
Q ss_pred cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
........+.+.+|++++ ++.|++||+.+
T Consensus 298 --------------------~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~------------------------------ 327 (410)
T 1vyh_C 298 --------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVST------------------------------ 327 (410)
T ss_dssp --------------------SCC-------CCEEEEEETTSEEEEEETTT------------------------------
T ss_pred --------------------cccccccCCCCCEEEEEeCCCeEEEEECCC------------------------------
Confidence 000111234577888887 45799999876
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 401 (458)
......+.+|... |.+++| +|+|++|++|+.||+|++||+.+++++.++.+|...|++++|+|++++|+
T Consensus 328 --------~~~~~~~~~h~~~--v~~v~~-~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 328 --------GMCLMTLVGHDNW--VRGVLF-HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp --------TEEEEEEECCSSC--EEEEEE-CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred --------CceEEEEECCCCc--EEEEEE-cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence 3456677888875 899998 99999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcEEEecC
Q 012712 402 SSGIESDIKILTP 414 (458)
Q Consensus 402 s~~~d~~i~iw~~ 414 (458)
+|+.|++|++|++
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999986
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-48 Score=352.73 Aligned_cols=333 Identities=12% Similarity=0.101 Sum_probs=272.5
Q ss_pred ecCCCceEEEEEecCCC-EEEEecCCCeEEEEEC----CCcc------eeeeecc---------CCCcceeEEEEccCCC
Q 012712 58 DKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW----KTER------VKLSFHS---------GHNDNVFQAKIMPFTD 117 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~----~~~~------~~~~~~~---------~~~~~i~~~~~~~~~~ 117 (458)
..|.+.|++++|+|+++ +||+++.|+.|++|++ .+++ ....+.. +|...|++++|+| +
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--D 119 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT--T
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC--C
Confidence 45679999999999999 9999999999999999 8777 3333311 1678999999999 9
Q ss_pred CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (458)
+++|++++.||.|++|+ .+++.... +..|...|.+++|+|++ .+|++++.|+.|++||+++++....+........
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLNV--LNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEEE--ECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeeee--ccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999999 44444443 77899999999999999 6889999999999999999887766653221100
Q ss_pred -----CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712 198 -----RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (458)
Q Consensus 198 -----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (458)
........+.+++|+|+ ..+++++.+|.|++||+++.+. ......|...|.+++|+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTP---------------TGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp ----------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSC---------------SEEECCCSSCEEEEEEETT
T ss_pred ceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCce---------------eeeeccCCCceEEEEECCC
Confidence 00001111788999986 4688999999999999988652 2234457789999999999
Q ss_pred CcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 273 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
+++|++++ ++.|++||+.+ ......+.+|... +.+++|
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~--------------------------------------~~~~~~~~~~~~~--i~~~~~- 297 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGN--------------------------------------GNSQNCFYGHSQS--IVSASW- 297 (425)
T ss_dssp TTEEEEEETTSCEEEECSSS--------------------------------------BSCSEEECCCSSC--EEEEEE-
T ss_pred CCEEEEEcCCCEEEEEECCC--------------------------------------CccceEecCCCcc--EEEEEE-
Confidence 99999988 56899999887 3455666777664 899998
Q ss_pred cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc-------------
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD------------- 418 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~------------- 418 (458)
+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|++.+++
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence 9999 99999999999999999999999999999999999999999999999999999999998876
Q ss_pred -------cc-ccccccc--cEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 419 -------RA-TLPTNIE--QVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 419 -------~~-~~~~~~~--~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.. .+..|.. .|.+++|+|++++|++++.||.|++|++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp --CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 33 5666755 8999999999999999999999999985
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-49 Score=358.36 Aligned_cols=333 Identities=12% Similarity=0.146 Sum_probs=268.3
Q ss_pred CCCCCCCCCC-eEEEe----------eCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEe
Q 012712 2 DDASNNNNNK-RARTS----------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN 70 (458)
Q Consensus 2 ~~~~~~~~~~-~l~~~----------~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 70 (458)
-.+.|+|+++ +|++| +.|+.|+|||+.+++.... ... ..|...|.+++|+
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~------------------~~~-~~~~~~v~~~~~s 76 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP------------------IAS-LQVDSKFNDLDWS 76 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC------------------SCC-CCCSSCEEEEEEC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE------------------EEE-EecCCceEEEEEC
Confidence 4578999987 89999 8999999999998763311 112 3589999999999
Q ss_pred cCCCEEEEecCCCeEEEEECCC----cceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeeccccc------
Q 012712 71 TDGDILISGSDDRRVILWDWKT----ERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERG------ 139 (458)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~------ 139 (458)
|++++|++++.|+.|++||+.+ .+.+..+ .+|...|.+++|+| + +.+|++++.||.|++||+.+.+
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNA--KQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECS--SSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcC--CCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 9999999999999999999987 2344444 78999999999999 8 8999999999999999998876
Q ss_pred ceee-eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 140 GVET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 140 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
.... .....|...|.+++|+|++..+|++++.|+.|++||+++++....+...... .+ +...+.+++|+|++..+
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--SG--IKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--SC--CCCCEEEEEECSSCTTE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc--cc--cCCceEEEEECCCCCCE
Confidence 2221 2246789999999999995588999999999999999998776655432110 00 14467888888875567
Q ss_pred EEEecCCC---eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712 219 FAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 219 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
+++++.|+ .|++||+++.+.
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~--------------------------------------------------------- 252 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANT--------------------------------------------------------- 252 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTS---------------------------------------------------------
T ss_pred EEEEECCCCCceEEEEeCCCCCC---------------------------------------------------------
Confidence 88888887 888888765420
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEec
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 373 (458)
....+. +|.. .+.+++| +| ++++|++++.||.|++||+.
T Consensus 253 ------------------------------------~~~~~~~~~~~--~v~~~~~-s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 253 ------------------------------------PLQTLNQGHQK--GILSLDW-CHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp ------------------------------------CSBCCCSCCSS--CEEEEEE-CSSCSSCEEEEESSSEEEEECSS
T ss_pred ------------------------------------CcEEeecCccC--ceeEEEe-CCCCCCeEEEEeCCCCEEEeeCC
Confidence 111222 3444 3888888 88 89999999999999999999
Q ss_pred CCeEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccccccc-----------------------------
Q 012712 374 GGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLP----------------------------- 423 (458)
Q Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~----------------------------- 423 (458)
+++++..+.+|...|.+++|+|++ ++|++++.|+.|++|++.+.......
T Consensus 294 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (416)
T 2pm9_A 294 SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV 373 (416)
T ss_dssp SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred CCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence 999999999999999999999999 89999999999999999876533211
Q ss_pred -------cccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 424 -------TNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 424 -------~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.+...+.+++|+|||++|++++.|+.|+||+..
T Consensus 374 ~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 374 FHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp SCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 145567899999999999999999999999864
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.3e-48 Score=333.89 Aligned_cols=296 Identities=21% Similarity=0.346 Sum_probs=253.9
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
..+..++.+|.+.|++++|+|++++|++++.|+.|++|++.+++....+ .+|...|.+++|+| ++++|++++.|+.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcC--CCCEEEEECCCCEE
Confidence 4556788999999999999999999999999999999999998887776 78999999999999 99999999999999
Q ss_pred EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
++||+.+++.+.. +.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+.. +..++.+++
T Consensus 90 ~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~v~~~~ 156 (312)
T 4ery_A 90 KIWDVSSGKCLKT--LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPA----------HSDPVSAVH 156 (312)
T ss_dssp EEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEE
T ss_pred EEEECCCCcEEEE--EcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcEEEEE
Confidence 9999998877655 78899999999999998 6899999999999999999887666543 445799999
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEc
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~ 289 (458)
|+|+ +.++++++.||.|++||+++.+.. ......+...+..++|+|++++|++++ ++.|++||+
T Consensus 157 ~~~~-~~~l~~~~~d~~i~~wd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 157 FNRD-GSLIVSSSYDGLCRIWDTASGQCL--------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp ECTT-SSEEEEEETTSCEEEEETTTCCEE--------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCcee--------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9997 789999999999999999876532 222334567899999999999999888 558999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
.++ .....+.+|..........+..+++++|++|+.||.|++
T Consensus 222 ~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 222 SKG--------------------------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp TTT--------------------------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred CCC--------------------------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 873 345556666543223333443578999999999999999
Q ss_pred EEecCCeEEEEeecCCceeeEEEecCCCCeEEEee--cCCcEEEecCC
Q 012712 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (458)
Q Consensus 370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~ 415 (458)
||+.+++.+..+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999987 69999999864
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.6e-49 Score=343.48 Aligned_cols=295 Identities=16% Similarity=0.242 Sum_probs=233.2
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
..+.|+|||++|++++ |+++|+||.......... ..... ........|...|.+++|+|++ .|++|+.
T Consensus 34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~ 101 (344)
T 4gqb_B 34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----AAPNE-----GFCSAGVQTEAGVADLTWVGER-GILVASD 101 (344)
T ss_dssp EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----GTTCG-----GGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred EEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----ccCCc-----ceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence 3567999999999888 888999985422111000 00000 0111223477889999999985 6889999
Q ss_pred CCeEEEEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712 82 DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
||+|+|||+.+++.+... ..+|...|++++|+| ++++|++++.|+.|++||+.+++.+.. +.+|...|.+++|
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSS--YRAHAAQVTCVAA 177 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEE
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCcCCceEEEEe
Confidence 999999999988764432 358999999999999 999999999999999999998877655 8899999999999
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
+|++..+|++++.|+.|++||+++++....+.... +...+.+++|+|+++++|++|+.||.|++||+++++
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~- 248 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS- 248 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred cCCCCCceeeeccccccccccccccceeeeeecce--------eeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-
Confidence 99987789999999999999999998776654221 334588999999877899999999999999987643
Q ss_pred CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
T Consensus 249 -------------------------------------------------------------------------------- 248 (344)
T 4gqb_B 249 -------------------------------------------------------------------------------- 248 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 397 (458)
.+..+.+|... |.+++| +|++ ++|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|++
T Consensus 249 -------------~~~~~~~h~~~--v~~v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 249 -------------CVLSSAVHSQC--VTGLVF-SPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLN 311 (344)
T ss_dssp -------------CCEEEECCSSC--EEEEEE-CSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSS
T ss_pred -------------EEEEEcCCCCC--EEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCC
Confidence 12334455553 888998 9987 58999999999999999888765 578899999999999998
Q ss_pred C-eEEEeecCCcEEEecCCccc
Q 012712 398 T-VLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 398 ~-~l~s~~~d~~i~iw~~~~~~ 418 (458)
+ +|++++.|++|++|++.+..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 7 56789999999999998754
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-48 Score=343.17 Aligned_cols=288 Identities=16% Similarity=0.233 Sum_probs=229.8
Q ss_pred CCCCCCCCCCeEEEeeC------CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCE
Q 012712 2 DDASNNNNNKRARTSVD------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI 75 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~------d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 75 (458)
..+.|+|||++|++|+. |+.|++|+..++..... +.....+|...|.+++|+|++.+
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~V~~~~~s~d~~~ 108 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-----------------LCTAGVQTEAGVTDVAWVSEKGI 108 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-----------------GCSEEEECSSCEEEEEEETTTEE
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-----------------EecccCCCCCCEEEEEEcCCCCE
Confidence 35779999999999997 77899999887765432 12335579999999999999865
Q ss_pred EEEecCCCeEEEEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 76 LISGSDDRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
++++.|++|+|||+.+++..... ..+|...|++++|+| ++++|++++.|+.|++||+.+++.+.. +.+|...
T Consensus 109 -l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~ 183 (357)
T 4g56_B 109 -LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSE 183 (357)
T ss_dssp -EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSC
T ss_pred -EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCC
Confidence 56778999999999887654322 247999999999999 999999999999999999998877655 7889999
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
|++++|+|++..++++++.|+.|++||+++++....+.... +...+.+++|+|+++.+|++|+.|+.|++||
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~--------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA--------SDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT--------CCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc--------ccccccchhhhhcccceEEEeecccceeEEE
Confidence 99999999987789999999999999999988765543221 4456899999998778999999999999999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
+++.+.
T Consensus 256 ~~~~~~-------------------------------------------------------------------------- 261 (357)
T 4g56_B 256 IKNPDS-------------------------------------------------------------------------- 261 (357)
T ss_dssp SSCGGG--------------------------------------------------------------------------
T ss_pred CCCCcE--------------------------------------------------------------------------
Confidence 876531
Q ss_pred CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEE
Q 012712 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCI 391 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 391 (458)
...+.+|... |.+++| +|++ ++|++|+.|++|+|||+++++++..+ +|.+.|+++
T Consensus 262 --------------------~~~~~~~~~~--v~~l~~-sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v 317 (357)
T 4g56_B 262 --------------------AQTSAVHSQN--ITGLAY-SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV 317 (357)
T ss_dssp --------------------CEEECCCSSC--EEEEEE-CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred --------------------eEEEecccee--EEEEEE-cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence 1223334443 788888 8887 58999999999999999999887765 799999999
Q ss_pred EecC-CCCeEEEeecCCcEEEecCCcc
Q 012712 392 EPHP-HSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 392 ~~s~-~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
+|+| ++++|++++.||+|++|++...
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9998 7999999999999999998754
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.5e-47 Score=329.63 Aligned_cols=293 Identities=15% Similarity=0.220 Sum_probs=243.2
Q ss_pred EeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCc-----ceeeeeccCCCcceeEEEEccCCCCeEEEE
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVT 123 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s 123 (458)
.+.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++... .++..+ .+|...|.+++|+| ++++|++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~--dg~~l~s 82 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTA--DGAYALS 82 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECC--CCCEEEE
Confidence 456778899999999999999965 89999999999999998643 233444 79999999999999 9999999
Q ss_pred EcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 124 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
++.|++|++||+.+++.... +.+|...|.+++|+|++ .+|++++.|+.|++||++.. ....+.. +.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~----------h~ 148 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLG----------HN 148 (319)
T ss_dssp EETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECC----------CS
T ss_pred EeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEec----------cC
Confidence 99999999999998877655 78899999999999998 78999999999999999743 3333221 44
Q ss_pred cceEEEEECCCC-----CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712 204 VNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (458)
Q Consensus 204 ~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (458)
..+.++.|+|.. +..+++++.|+.|++||+++.+. .....+|...|.+++|+|+|++|++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---------------EADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---------------EEEECCCCSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---------------heeecCCCCcEEEEEEcCCCCEEEE
Confidence 578999999852 34899999999999999987653 2234567889999999999999999
Q ss_pred ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (458)
Q Consensus 279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~ 357 (458)
++ ++.|++||+.++ +....+..+. .+.+++| +|++.+
T Consensus 214 ~~~dg~i~iwd~~~~--------------------------------------~~~~~~~~~~---~v~~~~~-sp~~~~ 251 (319)
T 3frx_A 214 AGKDGEIMLWNLAAK--------------------------------------KAMYTLSAQD---EVFSLAF-SPNRYW 251 (319)
T ss_dssp EETTCEEEEEETTTT--------------------------------------EEEEEEECCS---CEEEEEE-CSSSSE
T ss_pred EeCCCeEEEEECCCC--------------------------------------cEEEEecCCC---cEEEEEE-cCCCCE
Confidence 98 558999999873 3445555443 3899998 999999
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeec--------CCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 358 VVSGSDCGRIFIWKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 358 l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
|++++. +.+++|++.....+..+.. |...+.+++|+|||++|++|+.||.|++|++.++
T Consensus 252 la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 998875 4599999988877776643 4557899999999999999999999999998753
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-46 Score=335.37 Aligned_cols=309 Identities=20% Similarity=0.278 Sum_probs=246.3
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCC------------------cceeEEEEcc
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN------------------DNVFQAKIMP 114 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~i~~~~~~~ 114 (458)
+.+.+ +|.+.|.+++|+|||++||+|+ ++.+++|++.+++.+..+ ..|. ..|.+++|+|
T Consensus 57 ~~~~~-~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECT
T ss_pred eEEec-CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECC
Confidence 33444 5999999999999999999987 678999999998877665 3332 2489999999
Q ss_pred CCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (458)
Q Consensus 115 ~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (458)
++++|++++.|+.|++||+.+++.... +.+|...|.+++|+|++ ..|++++.|+.|++||+++++....+.
T Consensus 134 --dg~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~---- 204 (393)
T 1erj_A 134 --DGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS---- 204 (393)
T ss_dssp --TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred --CCCEEEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE----
Confidence 999999999999999999988776554 78999999999999999 688999999999999999987766554
Q ss_pred CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (458)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (458)
....+.+++|+|.++.+|++|+.|+.|++||+++++....... ......+|...|.+++|+|+++
T Consensus 205 -------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 205 -------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS--------ENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp -------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSS
T ss_pred -------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc--------cccCCCCCCCCEEEEEECCCCC
Confidence 3346899999995478999999999999999988754322110 0112245788999999999999
Q ss_pred EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (458)
Q Consensus 275 ~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (458)
+|++++ ++.|++||+.+......... .........+.+|... |.+++| +|
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~--------------------------~~~~~~~~~~~~h~~~--v~~~~~-~~ 320 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKT--------------------------PNSGTCEVTYIGHKDF--VLSVAT-TQ 320 (393)
T ss_dssp EEEEEETTSEEEEEEC-----------------------------------------CEEEEEECCSSC--EEEEEE-CG
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccC--------------------------CCCCcceEEEecccCc--EEEEEE-CC
Confidence 999998 55899999976432211000 0012334566778774 899998 99
Q ss_pred CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC------CCCeEEEeecCCcEEEecCCcc
Q 012712 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
++++|++|+.|+.|++||+.+++++..+.+|.+.|.+++|++ ++++||+|+.||+|+||++...
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999999999999999999999999999876 6889999999999999997643
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-46 Score=330.19 Aligned_cols=286 Identities=14% Similarity=0.168 Sum_probs=244.3
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (458)
+.+|.+.|++++|+| ++++|++++.||.|++||+.+++.... +..|...|.+++|+|++ .++++++.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEE--EECSSSCEEEEEECTTS-SEEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcceE--eecCCccEEEEEECCCC-CEEEEEeCCCeEEEEE
Confidence 379999999999999 999999999999999999988877655 67799999999999999 6899999999999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (458)
+.+++........ ..+ +...+.++.|+|+ + .+++++.|+.|++||+++++. ......
T Consensus 126 ~~~~~~~~~~~~~----~~~--h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~~~~---------------~~~~~~ 182 (340)
T 1got_B 126 LKTREGNVRVSRE----LAG--HTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQ---------------TTTFTG 182 (340)
T ss_dssp TTTCSBSCEEEEE----EEC--CSSCEEEEEEEET-T-EEEEEETTSCEEEEETTTTEE---------------EEEECC
T ss_pred CccCCCcceeEEE----ecC--CCccEEEEEECCC-C-cEEEEECCCcEEEEECCCCcE---------------EEEEcC
Confidence 9876432111100 011 4557999999986 3 588999999999999988753 233456
Q ss_pred cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
|...|.+++|+|+++++++++ ++.|++||+.+ ......+.+
T Consensus 183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~--------------------------------------~~~~~~~~~ 224 (340)
T 1got_B 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--------------------------------------GMCRQTFTG 224 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------------------------------CSEEEEECC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------------CeeEEEEcC
Confidence 788999999999999999988 55899999986 345667778
Q ss_pred ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
|... |.+++| +|++++|++|+.||+|++||+.+++.+..+.. +...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 225 h~~~--v~~v~~-~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 225 HESD--INAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp CSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CcCC--EEEEEE-cCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 8875 899998 99999999999999999999999988877753 234799999999999999999999999999988
Q ss_pred cccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 417 ADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 417 ~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
++.. .+.+|...|.+++|+|||.+|++|+.|+.|+|||
T Consensus 302 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 7654 6778999999999999999999999999999996
No 28
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-47 Score=374.10 Aligned_cols=437 Identities=11% Similarity=0.040 Sum_probs=286.6
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEcccccccccc----------cc----ccccccccceEEee------ee--------
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRN----------FA----LRRRASEDLVLRLG------IY-------- 54 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~----------~~----~~~~~~~~~~~~~~------~~-------- 54 (458)
.+.|+| +++|++++.|++|+|||+.+++++... ++ .+++++.++..++- +.
T Consensus 63 ~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 63 EMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp EEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred EEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc
Confidence 355777 778999999999999999888766432 11 25666777766551 11
Q ss_pred ---eEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCCcceeeeeccC------------------CCcceeEEEE
Q 012712 55 ---AKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSG------------------HNDNVFQAKI 112 (458)
Q Consensus 55 ---~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~~i~~~~~ 112 (458)
..+.+|.++|.+++|+|+ +..|++|+.|+.| +||+++++.+..+ .. |...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEE-ecccCCcCCCcccccccccccCCCeEEEEE
Confidence 235789999999999996 4789999999999 9999998877665 33 3578999999
Q ss_pred ccCCCCeEEEEEcCCCcEEEeecccccceeeeec---c-------------ccccceEEEEEc----CCCCeEEEEecCC
Q 012712 113 MPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---G-------------KHQGRAHKLAIE----PGSPHVFYTCGED 172 (458)
Q Consensus 113 ~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---~-------------~~~~~v~~~~~~----~~~~~~l~s~~~d 172 (458)
+| ++.+|++++.||.|++||+.+++.+..+.+ . .|...|.+++|+ |++..++++++.+
T Consensus 220 sp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 220 HP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp CT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred cC--CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 99 999999999999999999988776543222 1 134579999995 4443567777554
Q ss_pred -----CeEEEEeCC------------------CCCcccee---------------------------------------e
Q 012712 173 -----GLVQHFDLR------------------TGAATELF---------------------------------------T 190 (458)
Q Consensus 173 -----g~i~iwd~~------------------~~~~~~~~---------------------------------------~ 190 (458)
..+.+|++. +++....+ .
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~ 377 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIE 377 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEE
Confidence 256666631 00000000 0
Q ss_pred ecccC-C------------CCcce--------------------------------eecceEEEEECCCCCcEEEEecCC
Q 012712 191 CRPID-D------------RRNYM--------------------------------TVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 191 ~~~~~-~------------~~~~~--------------------------------~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
..... . ...|. +...+.+++|+|+ +++|++|+.|
T Consensus 378 ~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-g~~laSgs~D 456 (902)
T 2oaj_A 378 TMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAFITGHSN 456 (902)
T ss_dssp EEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-EEEEEEEETT
T ss_pred EEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc-CcEEEEecCC
Confidence 00000 0 00000 1112334556787 7899999999
Q ss_pred CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCC----C-C
Q 012712 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP----P-P 299 (458)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~----~-~ 299 (458)
++|++||+.++.......+... ........|...|.+++|+|+|++||+++ +++|++|++.+++.... . .
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~----l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVN----LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEE----HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred CcEEEEECCCccccCCceEEee----chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence 9999999988742110000000 00001125778999999999999999999 55899999987632110 0 0
Q ss_pred CCCccccccccccCCCCccccCCCCC--CcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTA--NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 377 (458)
..............++.......... -....++...+.+|... |.+++| +||| +||+|+.|++|++||+++...
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svaf-SpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINN-SNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEE-CBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEe-cCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 00000000000000000000000000 00112345677888875 999998 9999 999999999999999988776
Q ss_pred EE--E---ee-cCCceeeEEEec-----CCC---CeEEEeecCCcEEEecC---Cccccc-ccccc-----cccEEEEE-
Q 012712 378 IR--V---IE-ADRHVVNCIEPH-----PHS---TVLASSGIESDIKILTP---NAADRA-TLPTN-----IEQVCFSI- 433 (458)
Q Consensus 378 ~~--~---~~-~~~~~v~~~~~s-----~~~---~~l~s~~~d~~i~iw~~---~~~~~~-~~~~~-----~~~v~~~~- 433 (458)
+. . +. +|.+.|++++|+ ||| ++|++|+.|++|++|++ .+++.. .+.+| .++|.+++
T Consensus 609 ~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~ 688 (902)
T 2oaj_A 609 IYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDA 688 (902)
T ss_dssp EEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEE
T ss_pred EEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEe
Confidence 64 2 32 788999999999 886 89999999999999999 666543 44444 35677776
Q ss_pred Ee----------------------cCCcEEEeeecCCceEEEEE
Q 012712 434 YS----------------------ADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 434 ~s----------------------~d~~~l~s~~~d~~i~~w~~ 455 (458)
|+ ++|.+|+++ +..|+||+.
T Consensus 689 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~ 730 (902)
T 2oaj_A 689 FSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITL 730 (902)
T ss_dssp EETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECT
T ss_pred EecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeC
Confidence 76 677777775 778999975
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-46 Score=331.63 Aligned_cols=326 Identities=12% Similarity=0.094 Sum_probs=269.6
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
|.++|.+++|+|||++++++..++.+.+|........... .+|...|.+++|+| ++++|++++ ||.|++|++.+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999999999888777777766555444444 47999999999999 999999999 9999999998765
Q ss_pred cee---eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 140 GVE---TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 140 ~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
... ......|...|.+++|+|++ .+|++++.|+.|++||+++++......... +...+.+++|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-~ 153 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTS--------SAPACYALAISPD-S 153 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEEC--------SSSCEEEEEECTT-S
T ss_pred ceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeeccc--------CCCceEEEEECCC-C
Confidence 332 21223788999999999998 689999999999999999887432222111 4456899999997 7
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~ 295 (458)
+++++++.||.|++||+++.+.. .....|...+.+++|+|++++|++++ ++.+++||+.++
T Consensus 154 ~~l~~~~~dg~v~~~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--- 215 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLHNQTLV---------------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG--- 215 (337)
T ss_dssp SEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---
T ss_pred CEEEEEeCCCcEEEEeCCCCcee---------------eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---
Confidence 89999999999999999886532 23345778999999999999999888 558999999863
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 375 (458)
.....+. +.. .+.+++| +|++++|++++.++.|++||+.++
T Consensus 216 -----------------------------------~~~~~~~-~~~--~v~~~~~-s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 216 -----------------------------------RQLQQHD-FTS--QIFSLGY-CPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp -----------------------------------EEEEEEE-CSS--CEEEEEE-CTTSSEEEEEETTSCEEEEETTSS
T ss_pred -----------------------------------ceEeeec-CCC--ceEEEEE-CCCCCEEEEEcCCCcEEEEECCCC
Confidence 2223332 333 3889998 999999999999999999999887
Q ss_pred eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
+.. .+..|...|.+++|+|++++|++++.||.|++|++.+++......|...+.+++|+|++++|++++.||.|++|+.
T Consensus 257 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 257 DKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 754 6778999999999999999999999999999999999988777778889999999999999999999999999998
Q ss_pred ec
Q 012712 456 LV 457 (458)
Q Consensus 456 ~~ 457 (458)
+.
T Consensus 336 ~~ 337 (337)
T 1gxr_A 336 IY 337 (337)
T ss_dssp EC
T ss_pred eC
Confidence 63
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-46 Score=324.46 Aligned_cols=286 Identities=15% Similarity=0.168 Sum_probs=240.8
Q ss_pred eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEE
Q 012712 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176 (458)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 176 (458)
..+ .+|.+.|.+++|+| ++++|++++.||.|++||+.++..+.. +..|..+|.+++|+|++ ++|++++.|+.|+
T Consensus 7 ~~~-~~h~~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 7 KTF-SNRSDRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVRS--IQVTETPVRAGKFIARK-NWIIVGSDDFRIR 80 (304)
T ss_dssp EEE-EEECSCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGG-TEEEEEETTSEEE
T ss_pred Eee-cCCCCceEEEEECC--CCCEEEEEcCCCcEEEEECCCCceeEE--eeccCCcEEEEEEeCCC-CEEEEECCCCEEE
Confidence 344 78999999999999 999999999999999999988776654 77899999999999999 6899999999999
Q ss_pred EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (458)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (458)
+||+++++.+..+.. +...|.+++|+|+ +.+|++|+.|+.|++||+++... ....
T Consensus 81 vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~--------------~~~~ 135 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEA----------HPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWA--------------LEQT 135 (304)
T ss_dssp EEETTTCCEEEEEEC----------CSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTE--------------EEEE
T ss_pred EEECCCCcEEEEEeC----------CCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcc--------------hhhh
Confidence 999999988776653 4557999999998 68999999999999999987531 1234
Q ss_pred ccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712 257 IGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (458)
Q Consensus 257 ~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (458)
..+|...|.+++|+| ++.+|++++ ++.|++||+.... ...
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~--------------------------------------~~~ 177 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------------------------------------PNF 177 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS--------------------------------------CSE
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------------------------------------ccc
Confidence 556888999999999 578898888 5589999987631 222
Q ss_pred ee-cCccceeeeeEEEEecC--CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEE
Q 012712 335 VY-KGHRNCVTVKGVNFFGP--KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411 (458)
Q Consensus 335 ~~-~~~~~~~~i~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i 411 (458)
.+ .+|... +..+.| +| ++++|++|+.|++|++||+.+++++.++.+|...|.+++|+|++++|++|+.||+|++
T Consensus 178 ~~~~~~~~~--v~~~~~-~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i 254 (304)
T 2ynn_A 178 TLTTGQERG--VNYVDY-YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254 (304)
T ss_dssp EEECCCTTC--EEEEEE-CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred eeccCCcCc--EEEEEE-EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE
Confidence 22 334343 666776 55 7889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccc-ccccccccEEEEEEecCCc--EEEeeecCCceEEEEE
Q 012712 412 LTPNAADRA-TLPTNIEQVCFSIYSADYW--WSKSQNFSCSILLFEW 455 (458)
Q Consensus 412 w~~~~~~~~-~~~~~~~~v~~~~~s~d~~--~l~s~~~d~~i~~w~~ 455 (458)
||+.+++.. .+..|...+.+++|+|++. ++++|+.|| +.+|+.
T Consensus 255 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred EECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 999988765 5667788899999999984 678877665 556654
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-46 Score=327.03 Aligned_cols=297 Identities=14% Similarity=0.164 Sum_probs=225.5
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccC-CCcceeEEEEccCCCCeEEEEEcCC
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
+++++.+.+|.++|.+++|+|+ +||+|+.|++|++||+..+. ....+..+ |...|.+++|+| ++++|++++.|
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s~D 79 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TSSEEEEEETT
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CCCEEEEEeCC
Confidence 3566789999999999999987 99999999999999998753 33333234 999999999999 99999999999
Q ss_pred CcEEEeeccccc-----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcce
Q 012712 128 GQVRHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYM 201 (458)
Q Consensus 128 g~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 201 (458)
+.|++|++.... ......+.+|...|.+++|+|++ .+|++++.|+.|++||++.. .....+... .+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~-----~~-- 151 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL-----QE-- 151 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE-----CC--
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe-----cc--
Confidence 999999985432 12233478899999999999999 78999999999999999543 221111111 11
Q ss_pred eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (458)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (458)
+...|.+++|+|+ +.+|++++.|+.|++||.++..
T Consensus 152 h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~-------------------------------------------- 186 (330)
T 2hes_X 152 HSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDD-------------------------------------------- 186 (330)
T ss_dssp CSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTE--------------------------------------------
T ss_pred CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCC--------------------------------------------
Confidence 4456888888887 6788888888888888875421
Q ss_pred CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC--CcEEE
Q 012712 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--CEYVV 359 (458)
Q Consensus 282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~l~ 359 (458)
..+...+.+|... |.+++| +|+ +.+|+
T Consensus 187 ------------------------------------------------~~~~~~~~~h~~~--v~~~~~-~~~~~~~~l~ 215 (330)
T 2hes_X 187 ------------------------------------------------WECVAVLNGHEGT--VWSSDF-DKTEGVFRLC 215 (330)
T ss_dssp ------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCSSSSCEEE
T ss_pred ------------------------------------------------eeEEEEccCCCCc--EEEEEe-cCCCCeeEEE
Confidence 0122344556654 888888 898 77899
Q ss_pred EecCCCeEEEEEecCC--------eEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc--c--cccccc
Q 012712 360 SGSDCGRIFIWKKKGG--------ELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR--A--TLPTNI 426 (458)
Q Consensus 360 ~~~~dg~i~iwd~~~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~--~--~~~~~~ 426 (458)
+|+.|++|++||+..+ .....+.. |...|.+++|++++ +|++++.||.|++|+..+++. . ....|.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 9999999999999764 34555555 88999999999765 899999999999999887632 2 235676
Q ss_pred c-cEEEEEEec--CCcEEEeeecCCceEEEEEe
Q 012712 427 E-QVCFSIYSA--DYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 427 ~-~v~~~~~s~--d~~~l~s~~~d~~i~~w~~~ 456 (458)
. .|.+++|+| ++.+|++++.||.|+||+.-
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 6 899999999 78999999999999999963
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=341.76 Aligned_cols=327 Identities=9% Similarity=0.086 Sum_probs=264.3
Q ss_pred CCCCCCCCCC-eEEEeeCCCcEEEEEc----cccccccccccccccccccceEEeeeee------EeecCCCceEEEEEe
Q 012712 2 DDASNNNNNK-RARTSVDKALVDVWLR----ELGQLSTRNFALRRRASEDLVLRLGIYA------KLDKHRGCVNTVSFN 70 (458)
Q Consensus 2 ~~~~~~~~~~-~l~~~~~d~~i~iw~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~v~~~~~s 70 (458)
-.+.|+|+++ +|++|+.||.|++||+ .+++.+.... ....+.. ...+|.+.|++++|+
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-----------IIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-----------EEEEEECCCCCC------CBCEEEEEEC
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-----------ccccccccccccccccCCCCceEEEEEc
Confidence 3466899999 9999999999999999 8777321100 0001111 123378899999999
Q ss_pred cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (458)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 150 (458)
|++++|++++.|+.|++|| .+++.+..+ ..|...|.+++|+| ++++|++++.||.|++||+.+++.... +..+.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~ 191 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQH--FELKE 191 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEE--ECCC-
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEE--eeccc
Confidence 9999999999999999999 566666666 78999999999999 999999999999999999988776654 55555
Q ss_pred cc---------------eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 151 GR---------------AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 151 ~~---------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
.. +.+++|+|++ .+++++.+|.|++||+++++....+.. +...+.+++|+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~- 258 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIG----------HHGPISVLEFNDT- 258 (425)
T ss_dssp --------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECC----------CSSCEEEEEEETT-
T ss_pred cCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeecc----------CCCceEEEEECCC-
Confidence 55 8999999986 478899999999999999877666542 4457999999998
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~ 294 (458)
+.+|++++.|+.|++||+++.+. ......|...|.+++|+|++ ++++++ ++.|++||+.+
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--- 319 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNGNS---------------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--- 319 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSBSC---------------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT---
T ss_pred CCEEEEEcCCCEEEEEECCCCcc---------------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC---
Confidence 68999999999999999988653 23344577899999999999 777666 66899999976
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
......+..|... +.+++| +|++++|++++.||.|++||+.+
T Consensus 320 -----------------------------------~~~~~~~~~~~~~--i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 320 -----------------------------------NTLLALSIVDGVP--IFAGRI-SQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp -----------------------------------TEEEEEEECTTCC--EEEEEE-CTTSSEEEEEETTSCEEEEECHH
T ss_pred -----------------------------------CcEeEecccCCcc--EEEEEE-cCCCCEEEEEECCCeEEEEECCC
Confidence 3445666666664 889998 99999999999999999999998
Q ss_pred Ce--------------------EEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 375 GE--------------------LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 375 ~~--------------------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
++ ++..+..|.. .|.+++|+|++++|++++.||.|++|+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 362 LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 88 8899999976 99999999999999999999999999986
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-47 Score=340.50 Aligned_cols=314 Identities=14% Similarity=0.182 Sum_probs=255.4
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (458)
.+..|+..+..+...+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+++.... +..|...|.+++|+|++
T Consensus 47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~~--~~~h~~~v~~~~~s~~g- 120 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKTHA--IKLHCPWVMECAFAPNG- 120 (380)
T ss_dssp GCCCCCCCCCEEEEEE-CCCSSCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEE--EECCCTTCCCCEECTTS-
T ss_pred cccccccceeEEeecc-cccccEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccceE--EecCCCCEEEEEECCCC-
Confidence 3445666666665665 89999999999999 999999999999999999988776655 77899999999999999
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
.+|++++.|+.+++||+.+....... ........+ +...+.++.|.|+++..|++|+.|+.|++||+++++......
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~-~~~~~~~~g--h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 197 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGN-MPVSRVLTG--HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG 197 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCS-STTCCBCCC--CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred CEEEEeeCCCcEEEEECCCCccccCC-ccceeeccC--CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEee
Confidence 78999999999999999764321100 000011122 455788999999867789999999999999999876432110
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
.....+|...|.+++|+| ++.+|++++ ++.|++||++..
T Consensus 198 ----------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~----------------------------- 238 (380)
T 3iz6_a 198 ----------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT----------------------------- 238 (380)
T ss_dssp ----------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----------------------------
T ss_pred ----------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----------------------------
Confidence 112345788999999987 788999988 558999998742
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc-------eeeEEEec
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-------VVNCIEPH 394 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s 394 (458)
......+.+|... |.+++| +|++++|++|+.||+|++||+.+++.+..+..+.. .|++++|+
T Consensus 239 --------~~~~~~~~~h~~~--v~~v~~-~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 239 --------SRAVRTYHGHEGD--INSVKF-FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp --------CCCCEEECCCSSC--CCEEEE-CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred --------CcceEEECCcCCC--eEEEEE-ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 3456778888885 899999 99999999999999999999999999988865432 48999999
Q ss_pred CCCCeEEEeecCCcEEEecCCccccc-cc----ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 395 PHSTVLASSGIESDIKILTPNAADRA-TL----PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 395 ~~~~~l~s~~~d~~i~iw~~~~~~~~-~~----~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
|+|++|++|+.||.|++||+..++.. .+ ..|.+.|.+++|+|||.+|++|+.|+.|++|++-
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 99999999999999999999877654 22 5788899999999999999999999999999974
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-46 Score=369.92 Aligned_cols=355 Identities=14% Similarity=0.145 Sum_probs=290.7
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.|+|++++|++|+.||.|+|||+.+++.+ ..+.+|.++|++++|+|++++|++++.|
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d 76 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSDD 76 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceE---------------------EEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence 4678999999999999999999999988766 4578999999999999999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC-C
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-G 161 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 161 (458)
+.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.||.|++|++.++.... ..+.+|...|.+++|+| +
T Consensus 77 g~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEE-EEEECCSSCEEEEEEETTE
T ss_pred CeEEEEECCCCcEEEEE-ecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEE-EEEcCCCCcEEEEEEEcCC
Confidence 99999999999988777 78999999999999 99999999999999999998764332 33778999999999999 5
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC--CCCcEEEEecCCCeEEEEecCCCccC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
+ ..+++++.||.|++||++++.....+... +...+.+++|+| + +.++++++.||.|++||+++++.
T Consensus 153 ~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~- 220 (814)
T 3mkq_A 153 P-STFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSC- 220 (814)
T ss_dssp E-EEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEE-
T ss_pred C-CEEEEEeCCCeEEEEECCCCcceeEEecC---------CCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcE-
Confidence 5 78999999999999999888776655432 224689999999 6 68999999999999999987653
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
......|...|.+++|+|++++|++++ ++.|++||+.++
T Consensus 221 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-------------------------- 260 (814)
T 3mkq_A 221 --------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-------------------------- 260 (814)
T ss_dssp --------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--------------------------
T ss_pred --------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------
Confidence 223345678999999999999999988 568999998873
Q ss_pred ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc--EEEEecCCCeEEEEEecCCeE----------EE-------
Q 012712 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFIWKKKGGEL----------IR------- 379 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~----------~~------- 379 (458)
.....+..+... +.+++| +|+++ ++++++ ++.+.+|++..... +.
T Consensus 261 ------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (814)
T 3mkq_A 261 ------------KVEKTLNVGLER--SWCIAT-HPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAA 324 (814)
T ss_dssp ------------SEEEEECCSSSS--EEEEEE-CTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSC
T ss_pred ------------cEEEEeecCCCc--EEEEEE-ccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECccccc
Confidence 344555555553 788888 88887 455554 66678887653221 11
Q ss_pred --------------------------EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEE
Q 012712 380 --------------------------VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSI 433 (458)
Q Consensus 380 --------------------------~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~ 433 (458)
.+..+...+.+++|+|+|++|++++ |+.+.+|++.... ..+.+.+.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~----~~~~~~i~~~~ 399 (814)
T 3mkq_A 325 ASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR----NKAFGKCQDFV 399 (814)
T ss_dssp TTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE----EEEEEECSEEE
T ss_pred ceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc----ccCCCceEEEE
Confidence 1123444678999999999999988 8999999975432 23356788999
Q ss_pred EecCCcEEEeeecCCceEEEEE
Q 012712 434 YSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 434 ~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
|+|||+++++++.|+.|++|+.
T Consensus 400 ~spdg~~la~~~~~g~v~l~~~ 421 (814)
T 3mkq_A 400 WGPDSNSYALIDETGQIKYYKN 421 (814)
T ss_dssp ECTTSSCEEEECTTCCEEEEET
T ss_pred EeCCCCeEEEEeCCCcEEEEEC
Confidence 9999999999999999999964
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-47 Score=344.23 Aligned_cols=341 Identities=13% Similarity=0.115 Sum_probs=277.0
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.|+|++++|++++.|+.|++||+.+++.... +..| ..+....|+|++++|++++.|
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~~l~~~~~d 118 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM---------------------LKRA-DYTAVDTAKLQMRRFILGTTE 118 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTT---------------------SCSC-CEEEEEEECSSSCEEEEEETT
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeE---------------------EecC-CceEEEEEecCCCEEEEEECC
Confidence 567899999999999999999999998776533 4445 455566789999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
+.|++||+.+++....+ .+|...|++++|+| ++++|++++.|+.|++||+.+++.... +.+|...|.+++|+|++
T Consensus 119 g~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREID-QAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRT--LIGHRATVTDIAIIDRG 193 (420)
T ss_dssp SCEEEECTTSCEEEEET-TSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEE--EECCSSCEEEEEEETTT
T ss_pred CCEEEEeCCCcceeeec-ccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceE--EcCCCCcEEEEEEcCCC
Confidence 99999999988876655 78999999999999 999999999999999999998877655 77899999999999998
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (458)
.+|++++.|+.|++||+++++....+..... +...+.++++.|.+...
T Consensus 194 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~------------------------ 241 (420)
T 3vl1_A 194 -RNVLSASLDGTIRLWECGTGTTIHTFNRKEN-------PHDGVNSIALFVGTDRQ------------------------ 241 (420)
T ss_dssp -TEEEEEETTSCEEEEETTTTEEEEEECBTTB-------TTCCEEEEEEEECCCSS------------------------
T ss_pred -CEEEEEcCCCcEEEeECCCCceeEEeecCCC-------CCCCccEEEEecCCcce------------------------
Confidence 6889999999999999999987776654322 33467788877652211
Q ss_pred cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
....+...+.+++|+|++++|++++ ++.|++||+.++.
T Consensus 242 -------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------------------------- 280 (420)
T 3vl1_A 242 -------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE---------------------------- 280 (420)
T ss_dssp -------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC----------------------------
T ss_pred -------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc----------------------------
Confidence 0111345788899999999999988 5589999998742
Q ss_pred CCCCCcccccCceee-cCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecCCe-EEEEeec-CCceeeEEEecCCC
Q 012712 322 PSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGGE-LIRVIEA-DRHVVNCIEPHPHS 397 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~v~~~~~s~~~ 397 (458)
....+ ..|.. .+.+++| +|+++ +|++|+.||.|++||+.+++ ++..+.. |...|.++.+ +++
T Consensus 281 ----------~~~~~~~~~~~--~v~~~~~-~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~ 346 (420)
T 3vl1_A 281 ----------QTIQLPSKFTC--SCNSLTV-DGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAG 346 (420)
T ss_dssp ----------EEEEECCTTSS--CEEEEEE-CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT
T ss_pred ----------eeEEcccccCC--CceeEEE-eCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCC
Confidence 22222 34554 3899999 99999 99999999999999999875 4777776 6667888855 578
Q ss_pred CeEEEeecCCcEEEecCCcc----------cccccccccccEEEEEEecCCc---EEEeeecCCceEEEEEec
Q 012712 398 TVLASSGIESDIKILTPNAA----------DRATLPTNIEQVCFSIYSADYW---WSKSQNFSCSILLFEWLV 457 (458)
Q Consensus 398 ~~l~s~~~d~~i~iw~~~~~----------~~~~~~~~~~~v~~~~~s~d~~---~l~s~~~d~~i~~w~~~~ 457 (458)
++|++++.|+.|++|++... ....+..+...|.+++|+|+++ .+++.+.+|.+.+|+.-.
T Consensus 347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 89999999999999998763 2234566778899999999999 777888899999998643
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-46 Score=327.96 Aligned_cols=298 Identities=15% Similarity=0.217 Sum_probs=238.3
Q ss_pred EEeeeeeEeecCCCceEEEEE-----ec-CCCEEEEecCCCeEEEEECCCcc-------eeeeeccCCCcceeEEEEccC
Q 012712 49 LRLGIYAKLDKHRGCVNTVSF-----NT-DGDILISGSDDRRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPF 115 (458)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~ 115 (458)
..+++...+.+|.+.|++++| ++ ++++|++|+.|++|++||+.+.+ .... +.+|...|.+++|+|
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~~~- 86 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA-LTGHNHFVSDLALSQ- 86 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEE-ECCCSSCEEEEEECS-
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccch-hccCCCceEEEEECC-
Confidence 345677889999999999999 76 89999999999999999987542 2333 379999999999999
Q ss_pred CCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712 116 TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 116 ~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
++.++++++.|+.|++||+.+++.... +.+|...|.+++|+|++ .+|++++.|+.|++||+..... .....
T Consensus 87 -~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-~~~~~---- 157 (343)
T 2xzm_R 87 -ENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-FSSAE---- 157 (343)
T ss_dssp -STTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE-EECCT----
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce-eeeec----
Confidence 999999999999999999998877655 78899999999999999 6889999999999999974321 11110
Q ss_pred CCCcceeecceEEEEECCCC---------CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712 196 DRRNYMTVVNLNAIAIDPRN---------ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (458)
..+ +...+.+++|+|++ +.++++++.|+.|++||..... ......|...|.+
T Consensus 158 -~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 158 -KEN--HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI----------------RYTFKAHESNVNH 218 (343)
T ss_dssp -TTS--CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE----------------EEEEECCSSCEEE
T ss_pred -ccC--CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce----------------eEEEcCccccceE
Confidence 011 44579999999973 1689999999999999953221 2234567889999
Q ss_pred EEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712 267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (458)
Q Consensus 267 ~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (458)
++|+|+|++|++++ ++.|++||+... ......+. +.. .|
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~-------------------------------------~~~~~~~~-~~~--~v 258 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNL-------------------------------------TYPQREFD-AGS--TI 258 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCC-------------------------------------SSCSEEEE-CSS--CE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC-------------------------------------cccceeec-CCC--cE
Confidence 99999999999998 558999998542 11222222 222 38
Q ss_pred eEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE--Eee-----------cCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIE-----------ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 346 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
.+++| +|++++++++ .|+.|++|++.+++... .+. +|...|.+++|+|+|++|++|+.||.|++|
T Consensus 259 ~~v~~-sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 259 NQIAF-NPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEE-CSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEE-CCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 89998 9999988765 57889999998776543 443 677889999999999999999999999999
Q ss_pred cCCccc
Q 012712 413 TPNAAD 418 (458)
Q Consensus 413 ~~~~~~ 418 (458)
++++++
T Consensus 337 ~~~~g~ 342 (343)
T 2xzm_R 337 SFETSA 342 (343)
T ss_dssp EEEEEE
T ss_pred EEEccC
Confidence 987653
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.8e-47 Score=331.31 Aligned_cols=305 Identities=15% Similarity=0.209 Sum_probs=234.6
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.|+|++++||+|+.|++|+|||+++++.... .....+|.+.|.+++|+|++++||+|+.|
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK------------------SVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEE------------------EEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceee------------------eeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 356899999999999999999999987653311 12246899999999999999999999999
Q ss_pred CeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEc
Q 012712 83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~ 159 (458)
++|++|++..+. .+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.++... ....+..|...|.+++|+
T Consensus 83 ~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp SCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred CcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 999999988764 33444 78999999999999 9999999999999999999876542 233477899999999999
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
|++ .+|++++.|+.|++||+++++....... .+ +...|.+++|+|+ +++|++++.|+.|++||.......
T Consensus 160 p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~------~~--h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 160 PSQ-ELLASASYDDTVKLYREEEDDWVCCATL------EG--HESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SSS-SCEEEEETTSCEEEEEEETTEEEEEEEE------CC--CSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCC-CEEEEEeCCCcEEEEEecCCCEEEEEEe------cC--CCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCC
Confidence 999 6899999999999999987754322221 12 4557999999998 789999999999999997543210
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (458)
. .+.+....+.
T Consensus 230 ~----------------------~~~~~~~~~~----------------------------------------------- 240 (345)
T 3fm0_A 230 Q----------------------GVACSGSDPS----------------------------------------------- 240 (345)
T ss_dssp T----------------------CCCCC---CE-----------------------------------------------
T ss_pred c----------------------cceeeccCCc-----------------------------------------------
Confidence 0 0000000000
Q ss_pred cCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe---------EEEEeecCCceee
Q 012712 320 ASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE---------LIRVIEADRHVVN 389 (458)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~ 389 (458)
..+...+.+ |.. .|.+++| +|++.+|++++.|+.|++|+..... ......+|...|+
T Consensus 241 ----------~~~~~~~~~~h~~--~v~~v~~-~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 307 (345)
T 3fm0_A 241 ----------WKCICTLSGFHSR--TIYDIAW-CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307 (345)
T ss_dssp ----------EEEEEEECSSCSS--CEEEEEE-CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred ----------cceeEEecCCCCC--cEEEEEE-ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence 011122222 333 3889998 9999999999999999999987542 1123457999999
Q ss_pred EEEecCCCC-eEEEeecCCcEEEecCCccccc
Q 012712 390 CIEPHPHST-VLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 390 ~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+++|+|++. +||+|+.||+|++|++.+++..
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 999999985 9999999999999999887654
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-45 Score=324.18 Aligned_cols=288 Identities=15% Similarity=0.133 Sum_probs=242.2
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.+|...|++++|+| ++++|++++.||.|++||..+++.... +..|...|.+++|+|++ ..+++++.|+.+++|++
T Consensus 61 ~gH~~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~~~--~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 61 KGHGNKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEHA--VTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPL 135 (354)
T ss_dssp ECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE--EECSSSCCCEEEECTTS-SEEEEESTTSEEEEEEC
T ss_pred cCCCCeEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcceE--EecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEE
Confidence 79999999999999 999999999999999999988776654 66688899999999999 78999999999999998
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
........... .....+ +...|.+++|+|+ +..|++++.|++|++||+++++. .....+|
T Consensus 136 ~~~~~~~~~~~--~~~~~~--h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~---------------~~~~~~h 195 (354)
T 2pbi_B 136 TFDKNENMAAK--KKSVAM--HTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQL---------------LQSFHGH 195 (354)
T ss_dssp CCCTTCCSGGG--CEEEEE--CSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCE---------------EEEEECC
T ss_pred ecccccccccc--ceeeec--cCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeE---------------EEEEcCC
Confidence 75432111000 000011 5557999999998 68999999999999999988753 2334567
Q ss_pred ccceeEEEeCC--CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 261 QVGITGLAFSD--QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 261 ~~~i~~~~~~~--~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
...|.+++|+| ++.+|++++ ++.|++||+.+ ......+.
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--------------------------------------~~~~~~~~ 237 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--------------------------------------GQCVQAFE 237 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--------------------------------------CCEEEEEC
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--------------------------------------CcEEEEec
Confidence 88999999987 467898888 56899999987 34566777
Q ss_pred CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
+|... |.+++| +|++++|++|+.|++|++||+..++.+..+..+ ...+.+++|+|++++|++++.|+.|++||+.
T Consensus 238 ~h~~~--v~~v~~-~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 238 THESD--VNSVRY-YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp CCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCC--eEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 88875 899999 999999999999999999999998888777644 3468999999999999999999999999998
Q ss_pred ccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 416 AADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 416 ~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+++.. .+.+|...|.+++|+|||++|++++.|+.|+||+
T Consensus 315 ~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 315 KGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 77654 6678999999999999999999999999999996
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.2e-46 Score=326.58 Aligned_cols=317 Identities=15% Similarity=0.154 Sum_probs=262.4
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.++|+|++++++..++.+.+|+..... +.. ...+|.+.|++++|+|++++|++++ |
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-d 71 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDALIGPGIPRHA--------------------RQI-NTLNHGEVVCAVTISNPTRHVYTGG-K 71 (337)
T ss_dssp EEEECSSSCEEECCCCTTSSSSTTCCSEE--------------------EEE-EEECCSSCCCEEEECSSSSEEEEEC-B
T ss_pred EEEECCCCCEEEeecCCCcEeccccCCcc--------------------ccc-eeccCCCceEEEEEecCCcEEEEcC-C
Confidence 46789999999988877776666544221 112 2347999999999999999999999 9
Q ss_pred CeEEEEECCCcceeeeec----cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712 83 RRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
+.|++||+.+++....+. ..|...|.+++|+| ++++|++++.||.|++||+.+++......+..|...+.+++|
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 999999998776433321 27899999999999 999999999999999999998875555557789999999999
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
+|++ .++++++.||.|++||+++++....+.. +...+.+++|+|+ +.++++++.||.|++||+++.+.
T Consensus 150 ~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 150 SPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCC-CEEEEEeCCCcEEEEeCCCCceeeeeec----------ccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCce
Confidence 9998 6889999999999999999877665543 4457999999997 68999999999999999988753
Q ss_pred CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (458)
... ..+...+.+++|+|+++++++++ ++.+++|++.+.
T Consensus 218 ~~~----------------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~------------------------- 256 (337)
T 1gxr_A 218 LQQ----------------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP------------------------- 256 (337)
T ss_dssp EEE----------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------------------------
T ss_pred Eee----------------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------
Confidence 211 12467899999999999999888 568999998763
Q ss_pred cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (458)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 397 (458)
....+..|... +.+++| +|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++
T Consensus 257 --------------~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 257 --------------DKYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD 318 (337)
T ss_dssp --------------CEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS
T ss_pred --------------CeEEEcCCccc--eeEEEE-CCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC
Confidence 12345566664 899998 999999999999999999999999887554 478899999999999
Q ss_pred CeEEEeecCCcEEEecC
Q 012712 398 TVLASSGIESDIKILTP 414 (458)
Q Consensus 398 ~~l~s~~~d~~i~iw~~ 414 (458)
++|++++.||.|++|++
T Consensus 319 ~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 319 KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCeEEEEEE
Confidence 99999999999999986
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-45 Score=316.31 Aligned_cols=284 Identities=13% Similarity=0.175 Sum_probs=237.9
Q ss_pred ccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccc---eeeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712 100 HSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGG---VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (458)
+.+|.+.|.+++|+| ++ ++|++++.|++|++|++..... .....+.+|...|.+++|+|++ .+|++++.|++|
T Consensus 13 l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v 89 (319)
T 3frx_A 13 LEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTL 89 (319)
T ss_dssp ECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred EccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEE
Confidence 379999999999998 65 7999999999999999875432 2234578999999999999999 789999999999
Q ss_pred EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (458)
++||+++++....+.. +...|.+++|+|+ +.++++|+.|+.|++||++... ..
T Consensus 90 ~~wd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~~~~----------------~~ 142 (319)
T 3frx_A 90 RLWDVATGETYQRFVG----------HKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQC----------------LA 142 (319)
T ss_dssp EEEETTTTEEEEEEEC----------CSSCEEEEEECTT-SCEEEEEETTSCEEEEETTSCE----------------EE
T ss_pred EEEECCCCCeeEEEcc----------CCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe----------------EE
Confidence 9999999987766653 4557999999997 7899999999999999997532 22
Q ss_pred cccccccceeEEEeCCCC------cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712 256 LIGDEQVGITGLAFSDQS------ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (458)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~------~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
...+|...+.+++|.|.+ ..+++++ ++.|++||+.+
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------------------------------------- 185 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------------------------------------- 185 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-------------------------------------
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-------------------------------------
Confidence 344578899999999954 4788877 55899999976
Q ss_pred cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCc
Q 012712 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD 408 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 408 (458)
......+.+|... |.+++| +|+|++|++|+.||+|++||+.+++.+..+..+ ..|.+++|+|++.+|++++. +.
T Consensus 186 -~~~~~~~~~h~~~--v~~~~~-sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-~~ 259 (319)
T 3frx_A 186 -FQIEADFIGHNSN--INTLTA-SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TG 259 (319)
T ss_dssp -TEEEEEECCCCSC--EEEEEE-CTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEET-TE
T ss_pred -chhheeecCCCCc--EEEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcC-CC
Confidence 3445667788875 899998 999999999999999999999999999998855 57999999999999998875 45
Q ss_pred EEEecCCcccccc---------cccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 409 IKILTPNAADRAT---------LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 409 i~iw~~~~~~~~~---------~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+++|++....... ...+...+.+++|+|||++|++|+.|+.|+|||..
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 9999988764321 12345569999999999999999999999999974
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7e-45 Score=319.56 Aligned_cols=296 Identities=18% Similarity=0.240 Sum_probs=229.1
Q ss_pred CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (458)
Q Consensus 7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (458)
++++++|++|+.|++|+|||+.+++.... .......+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus 36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp TCCCCEEEEEETTSCEEEEEECSSCCSSB--------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCcCCcccc--------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 34899999999999999999986543211 1123457889999999999999999999999999999
Q ss_pred EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC---
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP--- 163 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 163 (458)
+||+.+++.+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.............|...|.+++|+|++.
T Consensus 102 lwd~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 102 LWDLRTGTTYKRF-VGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEETTSSCEEEEE-ECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEECCCCcEEEEE-cCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence 9999999887777 78999999999999 99999999999999999997433322222347889999999999862
Q ss_pred ------eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712 164 ------HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 164 ------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
.+|++++.|+.|++||.. .+....+.. +...|.+++|+|+ +++|++|+.||.|++||++...
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~----------h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKA----------HESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEETT-TEEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCS
T ss_pred ccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcC----------ccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCc
Confidence 479999999999999943 333333321 4557999999998 7899999999999999995432
Q ss_pred cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCC--CCCCCCccccccccccCCC
Q 012712 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN--PPPSSPVSTRSEASEMGSD 315 (458)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 315 (458)
.. .... .+...|.+++|+|++++++++.++.+++|++.+..... .+...+
T Consensus 247 ~~--------------~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~------------- 298 (343)
T 2xzm_R 247 YP--------------QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP------------- 298 (343)
T ss_dssp SC--------------SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS-------------
T ss_pred cc--------------ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc-------------
Confidence 11 1111 12456999999999999998888899999998754322 111000
Q ss_pred CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe
Q 012712 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 376 (458)
........+|.. .+.+++| +|+|++|++|+.||.|++|++++++
T Consensus 299 --------------~~~~~~~~~~~~--~v~~~~~-sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 299 --------------ITKAEGQKGKNP--QCTSLAW-NALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp --------------GGGBTTBCCSCC--CEEEEEE-CSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred --------------chhhhhhcCCCC--ceEEEEE-CCCCCeEEEecCCceEEEEEEEccC
Confidence 000111234554 3889999 9999999999999999999987653
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4e-44 Score=315.44 Aligned_cols=297 Identities=13% Similarity=0.217 Sum_probs=240.5
Q ss_pred EeeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEE
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 124 (458)
++.+..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+. ....+.+|...|.+++|+| ++++|+++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~ 104 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSG 104 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEE
Confidence 44566789999999999999997 68999999999999999876542 1223378999999999999 99999999
Q ss_pred cCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (458)
Q Consensus 125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (458)
+.|+.|++|+......... ...+...+..+.+++++ ..|++++.|+.+++||+.......... .+ +..
T Consensus 105 ~~d~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~-------~~--~~~ 172 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD-------ES--HSE 172 (340)
T ss_dssp ETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS-------SS--CSS
T ss_pred cccccceEEeecccceeee--ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe-------cc--ccC
Confidence 9999999999987766554 55677888899999998 678999999999999987654322211 11 445
Q ss_pred ceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC
Q 012712 205 NLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (458)
Q Consensus 205 ~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~ 282 (458)
.+..++|+++. ..++++++.|+.|++||+++.+. ......|...|.+++|+|++++|++++ ++
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL---------------KTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---------------eeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 78899998863 35778999999999999998753 233455788999999999999999988 55
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
.|++||+.+ ...+..+..+. .+.+++| +|++.++ +++
T Consensus 238 ~i~iwd~~~--------------------------------------~~~~~~~~~~~---~v~~~~~-~~~~~~~-~~~ 274 (340)
T 4aow_A 238 QAMLWDLNE--------------------------------------GKHLYTLDGGD---IINALCF-SPNRYWL-CAA 274 (340)
T ss_dssp EEEEEETTT--------------------------------------TEEEEEEECSS---CEEEEEE-CSSSSEE-EEE
T ss_pred eEEEEEecc--------------------------------------CceeeeecCCc---eEEeeec-CCCCcee-ecc
Confidence 899999986 33445555544 3788888 9987665 455
Q ss_pred CCCeEEEEEecCCeEEEEee---------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 363 DCGRIFIWKKKGGELIRVIE---------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
.|+.|++||++++..+..+. +|...|++++|+|++++|++|+.||.|+||++++|.
T Consensus 275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 69999999999887776553 578899999999999999999999999999998875
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-44 Score=355.07 Aligned_cols=334 Identities=15% Similarity=0.231 Sum_probs=279.1
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
++++.+.+.+|.+.|.+++|+|++++||+++.||.|+|||+.+++.+..+ .+|...|.+++|+| ++++|++++.||.
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFR 78 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeC--CCCEEEEEeCCCe
Confidence 34567789999999999999999999999999999999999999888877 68999999999999 9999999999999
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
|++||+.+++.... +.+|...|.+++|+|++ ..|++++.||.|++||++++. ....+.. +...+.+
T Consensus 79 i~vw~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~v~~ 145 (814)
T 3mkq_A 79 IRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMC 145 (814)
T ss_dssp EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEEC----------CSSCEEE
T ss_pred EEEEECCCCcEEEE--EecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcC----------CCCcEEE
Confidence 99999998887665 77899999999999999 678999999999999998773 3333332 4457999
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC--CCcEEEEec-CCcEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIY 285 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~~~i~ 285 (458)
++|+|+++..+++++.||.|++||+++.+.. ......+...+.+++|+| ++.+|++++ ++.|+
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSCS--------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 9999944789999999999999999876421 223334457899999999 899999988 45899
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg 365 (458)
+||+.+ ......+.+|... +.+++| +|++++|++++.||
T Consensus 212 ~~d~~~--------------------------------------~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 212 IWDYQT--------------------------------------KSCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDG 250 (814)
T ss_dssp EEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTS
T ss_pred EEECCC--------------------------------------CcEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCC
Confidence 999876 3456667777764 889998 99999999999999
Q ss_pred eEEEEEecCCeEEEEeecCCceeeEEEecCCCCe-EEEeecCCcEEEecCCccccc------------------------
Q 012712 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV-LASSGIESDIKILTPNAADRA------------------------ 420 (458)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~i~iw~~~~~~~~------------------------ 420 (458)
.|++||+.+++.+..+..|...+.+++|+|+++. +++++.++.+.+|++......
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence 9999999999999999999999999999999874 244555777888876542110
Q ss_pred --------------------ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 421 --------------------TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 421 --------------------~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
....+...+.+++|+|+|+++++++ |+.+.+|+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 0122333478999999999999988 899999984
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.4e-44 Score=310.20 Aligned_cols=284 Identities=15% Similarity=0.232 Sum_probs=241.2
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (458)
+.+|...|++++|+| ++++|++++.||.|++|++.+++.... +.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcccchh--hccCCCceEEEEEcCCC-CEEEEECCCCEEEEEE
Confidence 379999999999999 999999999999999999988776554 78899999999999999 7899999999999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (458)
+++++....+.. +...|.+++|+|+ ++++++++.|+.|++||+++.+. ......
T Consensus 94 ~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~ 147 (312)
T 4ery_A 94 VSSGKCLKTLKG----------HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKC---------------LKTLPA 147 (312)
T ss_dssp TTTCCEEEEEEC----------CSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCE---------------EEEECC
T ss_pred CCCCcEEEEEcC----------CCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEE---------------EEEecC
Confidence 999987766653 4457999999998 78999999999999999987653 223445
Q ss_pred cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-
Q 012712 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK- 337 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 337 (458)
|...|.+++|+|++++|++++ ++.|++||+.++ .....+.
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------------------------------------~~~~~~~~ 189 (312)
T 4ery_A 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG--------------------------------------QCLKTLID 189 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------------------------------CEEEEECC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------------------------------ceeeEEec
Confidence 678899999999999999988 558999998763 2222332
Q ss_pred CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeE--EEe-cCCCCeEEEeecCCcEEEecC
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC--IEP-HPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~l~s~~~d~~i~iw~~ 414 (458)
.+.. .+..++| +|++++|++++.||.|++||+.+++.+..+.+|...+.. ..+ .+++++|++|+.||.|++||+
T Consensus 190 ~~~~--~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 190 DDNP--PVSFVKF-SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp SSCC--CEEEEEE-CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred cCCC--ceEEEEE-CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence 2222 3788888 999999999999999999999999999999888765432 233 467889999999999999999
Q ss_pred Cccccc-ccccccccEEEEEEecCCcEEEeee--cCCceEEEEE
Q 012712 415 NAADRA-TLPTNIEQVCFSIYSADYWWSKSQN--FSCSILLFEW 455 (458)
Q Consensus 415 ~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~--~d~~i~~w~~ 455 (458)
.+++.. .+.+|...|.+++|+|++.++++++ .|+.|++|+.
T Consensus 267 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 267 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 988765 6678999999999999999999987 6999999984
No 45
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.6e-44 Score=324.26 Aligned_cols=319 Identities=16% Similarity=0.237 Sum_probs=268.4
Q ss_pred eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
+....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++ +.+++++.||.|+
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRTLK 182 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCeEE
Confidence 345678999987633 35556899999999999999999999988777 79999999999964 5999999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
+||+.+++.... +.+|...|.+++|++ ..+++++.||.|++||+++++....+.. +...+.++++
T Consensus 183 vwd~~~~~~~~~--~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~----------~~~~v~~~~~ 247 (445)
T 2ovr_B 183 VWNAETGECIHT--LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMG----------HVAAVRCVQY 247 (445)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEEC----------CSSCEEEEEE
T ss_pred EEECCcCcEEEE--ECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcC----------CcccEEEEEE
Confidence 999998876655 788999999999964 4689999999999999999887766653 4457899999
Q ss_pred CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (458)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~ 290 (458)
+ +.++++++.||.|++||+++.+.. .....|...|.+++| ++.++++++ ++.|++||+.
T Consensus 248 --~-~~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 248 --D-GRRVVSGAYDFMVKVWDPETETCL---------------HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp --C-SSCEEEEETTSCEEEEEGGGTEEE---------------EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred --C-CCEEEEEcCCCEEEEEECCCCcEe---------------EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence 3 578999999999999999886532 233457788999999 778888887 6689999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
+ ......+.+|... +.++.+ +++++++|+.||.|++|
T Consensus 308 ~--------------------------------------~~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 308 T--------------------------------------GNCIHTLTGHQSL--TSGMEL---KDNILVSGNADSTVKIW 344 (445)
T ss_dssp T--------------------------------------CCEEEEECCCCSC--EEEEEE---ETTEEEEEETTSCEEEE
T ss_pred C--------------------------------------CCEEEEEcCCccc--EEEEEE---eCCEEEEEeCCCeEEEE
Confidence 7 3445667777664 666655 57799999999999999
Q ss_pred EecCCeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccc------ccccccEEEEEEecCCcEE
Q 012712 371 KKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL------PTNIEQVCFSIYSADYWWS 441 (458)
Q Consensus 371 d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l 441 (458)
|+.+++.+..+.. |...|.+++|+ +++|++++.||.|++|++.+++.... ..+.+.|++++|+|++.++
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 422 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence 9999999999986 88899999995 68999999999999999998876533 3677789999999999999
Q ss_pred EeeecCCc----eEEEEEe
Q 012712 442 KSQNFSCS----ILLFEWL 456 (458)
Q Consensus 442 ~s~~~d~~----i~~w~~~ 456 (458)
++++.||+ |.+||+-
T Consensus 423 a~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 423 AVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEECSSSSSCCEEEEEECC
T ss_pred EEcccCCCCccEEEEEECC
Confidence 99999998 9999984
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-46 Score=338.67 Aligned_cols=320 Identities=13% Similarity=0.055 Sum_probs=224.1
Q ss_pred CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC------CCEEEEec
Q 012712 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD------GDILISGS 80 (458)
Q Consensus 7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~ 80 (458)
+|+++.+++++.|++|+|||++++++.. .....+.+|.+.|.+++|+|+ +.+||+++
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~-----------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHC-----------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp ------------CEEEEEEEEETTTCCE-----------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCc-----------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 3445556667789999999998776431 122346778899999999997 57999999
Q ss_pred CCCeEEEEECCCccee-----------eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc
Q 012712 81 DDRRVILWDWKTERVK-----------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 149 (458)
.|++|+|||+.++... ..+ .+|...|++++|+| ++ .|++|+.||+|++||++++.... ..+.+|
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~--~~-~lasgs~DgtV~lWD~~~~~~~~-~~~~~H 307 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLS--PT-TVVCGFKNGFVAEFDLTDPEVPS-FYDQVH 307 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESS--SS-EEEEEETTSEEEEEETTBCSSCS-EEEECS
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecC--CC-eEEEEeCCCEEEEEECCCCCCce-EEeecc
Confidence 9999999999876421 133 68999999999998 64 79999999999999998764322 236789
Q ss_pred ccceEEE--EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712 150 QGRAHKL--AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (458)
Q Consensus 150 ~~~v~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (458)
...|.++ +|+|+++++|++++.|++|++||+++++....+..+. ....+.+++|+|+ +..+++++.|++
T Consensus 308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------~~~~v~~v~fsp~-~~~l~s~~~d~t 378 (524)
T 2j04_B 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------RGSNLVPVVYCPQ-IYSYIYSDGASS 378 (524)
T ss_dssp SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------SCCSCCCEEEETT-TTEEEEECSSSE
T ss_pred cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------ccCcccceEeCCC-cCeEEEeCCCCc
Confidence 9999999 5677754689999999999999999877665544211 1124678889997 567888888888
Q ss_pred EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccc
Q 012712 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (458)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 307 (458)
|++||+++..
T Consensus 379 v~lwd~~~~~---------------------------------------------------------------------- 388 (524)
T 2j04_B 379 LRAVPSRAAF---------------------------------------------------------------------- 388 (524)
T ss_dssp EEEEETTCTT----------------------------------------------------------------------
T ss_pred EEEEECcccc----------------------------------------------------------------------
Confidence 9999887642
Q ss_pred cccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec----
Q 012712 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---- 383 (458)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---- 383 (458)
....+.+|... |.+++| +|+|++|++|+.||+|++||+... .+..++.
T Consensus 389 ------------------------~~~~l~gH~~~--V~sva~-Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~ 440 (524)
T 2j04_B 389 ------------------------AVHPLVSRETT--ITAIGV-SRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSAT 440 (524)
T ss_dssp ------------------------CCEEEEECSSC--EEEEEC-CSSCCBCEEEETTTEEECCBSCSS-TTTCC------
T ss_pred ------------------------cceeeecCCCc--eEEEEe-CCCCCeEEEEECCCEEEEEechHh-hccccccCccc
Confidence 11223345553 888998 999999999999999999998543 2222111
Q ss_pred -CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCC---cEEEeeecCCceEEEEEe
Q 012712 384 -DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADY---WWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 384 -~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~---~~l~s~~~d~~i~~w~~~ 456 (458)
+...+..++|+|+++.+. ...+..+..|+........+.+|...|.+++|+|++ .++|+|+.||.|+||++-
T Consensus 441 ~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 441 QKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 112578999999998653 222223333333344556788899999999999996 599999999999999964
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.5e-44 Score=338.88 Aligned_cols=351 Identities=16% Similarity=0.167 Sum_probs=269.3
Q ss_pred CCCCCC--CCCeEEEeeCCCcEEEEEcccc--------cccccc-----------ccc----ccccccc----ceEEe--
Q 012712 3 DASNNN--NNKRARTSVDKALVDVWLRELG--------QLSTRN-----------FAL----RRRASED----LVLRL-- 51 (458)
Q Consensus 3 ~~~~~~--~~~~l~~~~~d~~i~iw~~~~g--------~~~~~~-----------~~~----~~~~~~~----~~~~~-- 51 (458)
.+.|+| ++++|++|+.||.|+|||+.++ +.+... +++ ++.+..+ +...+
T Consensus 69 ~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred EEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 356889 9999999999999999999765 332221 111 3333332 12221
Q ss_pred --eeeeEeecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCc---ceeEEEEccCCC-CeEEEEE
Q 012712 52 --GIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTD-DRSIVTC 124 (458)
Q Consensus 52 --~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~-~~~l~s~ 124 (458)
+....+.+|.+.|.+++|+|+++ +|++++.|+.|++||+.+++.+..+ .+|.. .|.+++|+| + +++|+++
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~--~~~~~l~~~ 225 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSP--DSGEFVITV 225 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECS--TTCCEEEEE
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECC--CCCCEEEEE
Confidence 45677889999999999999997 8999999999999999999888777 68988 999999999 9 9999999
Q ss_pred cCCCcEEEeecccccceeeeec-c---ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecc-------
Q 012712 125 AADGQVRHAQILERGGVETKLL-G---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP------- 193 (458)
Q Consensus 125 ~~dg~i~vw~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------- 193 (458)
+.||.|++||+.+++.+.. + . .|...|.+++|+ ++ .+|++++.|+.|++||+++++....+....
T Consensus 226 ~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp ETTCCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred eCCCeEEEEECCCCCEeEE--ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 9999999999988877654 5 4 799999999999 77 789999999999999999876554443220
Q ss_pred ------------------------------cCCCCcc-------------------------------eeecceEEEEEC
Q 012712 194 ------------------------------IDDRRNY-------------------------------MTVVNLNAIAID 212 (458)
Q Consensus 194 ------------------------------~~~~~~~-------------------------------~~~~~v~~~~~~ 212 (458)
.....+| .+...|.+++|.
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence 0000000 011223333331
Q ss_pred ----------------------------------CCC-------------------------------------CcEEEE
Q 012712 213 ----------------------------------PRN-------------------------------------ANLFAV 221 (458)
Q Consensus 213 ----------------------------------p~~-------------------------------------~~~l~~ 221 (458)
|++ +.++++
T Consensus 382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence 110 234555
Q ss_pred ecC-CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCC
Q 012712 222 AGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 222 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~ 299 (458)
++. |+.|++||+.+.+.. ......|...|.+++|+|++++|++++ ++.|++||+.++
T Consensus 462 ~~~~d~~i~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~------- 520 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVS--------------FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR------- 520 (615)
T ss_dssp EETTTSCEEEEETTEEEEE--------------EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred eecCCCeEEEEECCCcccc--------------ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-------
Confidence 555 666777776654321 023445778999999999999999998 558999999873
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecC----------CCcEEEEecCCCeEE
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGP----------KCEYVVSGSDCGRIF 368 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~----------~~~~l~~~~~dg~i~ 368 (458)
.....+.+ |... |.+++| +| ++++|++++.||.|+
T Consensus 521 -------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 521 -------------------------------EVKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp -------------------------------EEEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEE
T ss_pred -------------------------------cceeEeecCCCCc--eeEEEE-cCccccccccccCCCEEEEEcCCCcEE
Confidence 34455555 6664 899999 99 999999999999999
Q ss_pred EEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 369 IWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 369 iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
+||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus 567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999988 78899999999999999999999 99999999999999864
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-43 Score=317.85 Aligned_cols=288 Identities=14% Similarity=0.201 Sum_probs=232.9
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc------------------ccceEEEEEcCCCC
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH------------------QGRAHKLAIEPGSP 163 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~ 163 (458)
+|...|.+++|+| ++++|++++ ++.+++|++.+++.+.. +..| ...|.+++|+|++
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg- 135 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVAR--LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG- 135 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEE--ECC-----------------CCCCBEEEEEECTTS-
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEE--ecCccccccccccccccccCCCceeEEEEEECCCC-
Confidence 6999999999999 999999987 68999999988776543 3322 2248999999999
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
.+|++++.|+.|++||+++++....+.. +...|.+++|+|+ +.+|++++.|+.|++||+++++...
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~--- 201 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQG----------HEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSL--- 201 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcc----------CCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEE---
Confidence 6899999999999999998876665542 4557999999998 6899999999999999998875321
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
...+...+.+++|+| ++++|++++ ++.|++||+.++.....+.
T Consensus 202 -------------~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~---------------------- 246 (393)
T 1erj_A 202 -------------TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD---------------------- 246 (393)
T ss_dssp -------------EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------
T ss_pred -------------EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeec----------------------
Confidence 112346799999999 899999988 5589999988743211100
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC------------eEEEEeecCCceee
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG------------ELIRVIEADRHVVN 389 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~ 389 (458)
.......+|... |.+++| +|+|++|++|+.|++|++||+.+. .+...+.+|...|.
T Consensus 247 ---------~~~~~~~~h~~~--v~~v~~-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 314 (393)
T 1erj_A 247 ---------SENESGTGHKDS--VYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314 (393)
T ss_dssp ---------------CCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred ---------ccccCCCCCCCC--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE
Confidence 001122456664 899999 999999999999999999998753 34567788999999
Q ss_pred EEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEec------CCcEEEeeecCCceEEEEEe
Q 012712 390 CIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSA------DYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~------d~~~l~s~~~d~~i~~w~~~ 456 (458)
+++|+|++++|++++.|+.|++||+.+++.. .+.+|...|.+++|+| ++.+|++|+.||+|+||++-
T Consensus 315 ~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 9999999999999999999999999988765 6678999999999986 68999999999999999974
No 49
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.8e-44 Score=322.15 Aligned_cols=349 Identities=15% Similarity=0.166 Sum_probs=240.7
Q ss_pred eEeecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCCcceeeeec------------cCCCcceeEEEEccCCCCeEE
Q 012712 55 AKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFH------------SGHNDNVFQAKIMPFTDDRSI 121 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~~~l 121 (458)
..+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. .+|...|.+++|+|. ++.+|
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l 115 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMF 115 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCcEE
Confidence 45788999999999999 99999999999999999999877654442 259999999999982 45689
Q ss_pred EEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC--eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712 122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (458)
Q Consensus 122 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (458)
++++.||.|++||+.+++.... + .+...+.++.++|.++ .++++++.|+.|++||+++++....+..
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------- 184 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADV--F-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG-------- 184 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC--------
T ss_pred EEEeCCCeEEEeeCCCCcccee--c-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC--------
Confidence 9999999999999998776654 2 2677899999998642 4899999999999999999887766643
Q ss_pred ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC-CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD-GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (458)
+...|.+++|+|++..++++++.||.|++||+++.... ....................|...|.+++|+|++++|++
T Consensus 185 --~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 262 (408)
T 4a11_B 185 --HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT 262 (408)
T ss_dssp --CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred --CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence 44579999999985447999999999999999876521 111111111111223334567889999999999999998
Q ss_pred ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (458)
Q Consensus 279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~ 357 (458)
++ ++.+++||+.++.......... ....... ...... ...+..
T Consensus 263 ~~~dg~i~vwd~~~~~~~~~~~~~~---------------------------------~~~~~~~-~~~~~~--~~~~~~ 306 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENTLVNYGKV---------------------------------CNNSKKG-LKFTVS--CGCSSE 306 (408)
T ss_dssp EETTSCEEEEETTTCCBCCCCCCCC---------------------------------CCCCSSC-CCCEEC--CSSSSC
T ss_pred ecCCCeEEEEECCCCccceeccccc---------------------------------ccccccc-ceeEEe--cCCCce
Confidence 88 5589999998865432221000 0000000 011111 334456
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecC
Q 012712 358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSAD 437 (458)
Q Consensus 358 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d 437 (458)
+++++.++.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++|++.+++........... ..+.|.
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~ 384 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPA 384 (408)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccc
Confidence 666778999999999999999999999999999999999999999999999999999988766433222222 233333
Q ss_pred C-cEEEeeecCCceEEEEE
Q 012712 438 Y-WWSKSQNFSCSILLFEW 455 (458)
Q Consensus 438 ~-~~l~s~~~d~~i~~w~~ 455 (458)
. ....+.+.|+.+++|+.
T Consensus 385 ~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 385 FEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp -------------------
T ss_pred cceeecccCccCceeecCC
Confidence 3 33346778899999975
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-43 Score=317.96 Aligned_cols=298 Identities=15% Similarity=0.134 Sum_probs=245.7
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc------eeeeeccCCCcceeEEEEccCCC----C--
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD----D-- 118 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~~----~-- 118 (458)
+...+.+.+|.+.|++++|+| ++|++|+.|+.|++||+.+++ .+..+ .+|...|.+++|+| + +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~g~~ 80 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQ--AIERDAFE 80 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEE--EEETTTEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEec--ccccCCcc
Confidence 456677899999999999998 799999999999999999887 55665 68999999999999 8 9
Q ss_pred -eEEEEEcCCCcEEEeecccccc-----eeeeecccc-----ccceEEEEEc----CCCCeE-EEEecCCCeEEEEeCCC
Q 012712 119 -RSIVTCAADGQVRHAQILERGG-----VETKLLGKH-----QGRAHKLAIE----PGSPHV-FYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 119 -~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i~iwd~~~ 182 (458)
++|++++.||.|++|++.+++. ... +..| ...|.+++|+ |++ .. |++++.||.|++||+++
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred ccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999999988775 433 6667 5899999999 998 56 99999999999999998
Q ss_pred ------CCccc-----eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCc
Q 012712 183 ------GAATE-----LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (458)
Q Consensus 183 ------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (458)
++... .+..... . ...+...+.+++|+|+ + ++++++.||.|++||+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~------------ 220 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVE-S--PMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPL------------ 220 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEEC-C--SSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEE------------
T ss_pred cccccccceeeccCcceeeeeec-c--ccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCcee------------
Confidence 65554 3321000 0 0114557999999998 6 9999999999999999876532
Q ss_pred CCCccccc---c---ccceeEEEeCCCCcEEEEec-C---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 252 CPPNLIGD---E---QVGITGLAFSDQSELLVSYN-D---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 252 ~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
..... | ...|.+++|+|++++|++++ + +.|++||+.++
T Consensus 221 ---~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------------------- 268 (397)
T 1sq9_A 221 ---YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------------------- 268 (397)
T ss_dssp ---EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-----------------------------
T ss_pred ---EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-----------------------------
Confidence 22233 5 78899999999999999988 4 58999999874
Q ss_pred CCCCCcccccCceeecC-------------ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee------
Q 012712 322 PSTANTDVRIAPQVYKG-------------HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE------ 382 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------ 382 (458)
.....+.+ |.. .|.+++| +|++++|++++.||.|++||+.+++++..+.
T Consensus 269 ---------~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 336 (397)
T 1sq9_A 269 ---------ERIGSLSVPTHSSQASLGEFAHSS--WVMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336 (397)
T ss_dssp ---------CEEEEECBC--------CCBSBSS--CEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred ---------cccceeccCcccccccccccccCC--cEEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc
Confidence 23344444 555 4899998 9999999999999999999999999999999
Q ss_pred cC---------------CceeeEEEecCCC----------CeEEEeecCCcEEEecCCcc
Q 012712 383 AD---------------RHVVNCIEPHPHS----------TVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 383 ~~---------------~~~v~~~~~s~~~----------~~l~s~~~d~~i~iw~~~~~ 417 (458)
+| ...|.+++|+|++ ++|++++.||.|++|++.++
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 88 8999999999998 79999999999999998875
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-43 Score=309.03 Aligned_cols=288 Identities=15% Similarity=0.210 Sum_probs=214.2
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe-ec-CCCceEEEEEecCCCEEEEecC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DK-HRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
+.++|+ +|++|+.|+.|++||+.++... ....+ .+ |.+.|.+++|+|++++||+|+.
T Consensus 20 ~~~s~~--~las~~~D~~i~lw~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 20 FDFSQG--ILATGSTDRKIKLVSVKYDDFT-------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp EEEETT--EEEEEESSSCEEEEECSSSCCE-------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred eccCCC--EEEEEcCCCEEEEEEecCCCeE-------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 345565 9999999999999999865321 12334 34 9999999999999999999999
Q ss_pred CCeEEEEECCCc-------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-c-eeeeeccccccc
Q 012712 82 DRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-G-VETKLLGKHQGR 152 (458)
Q Consensus 82 d~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~-~~~~~~~~~~~~ 152 (458)
|++|+|||+... +.+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.... . .....+.+|...
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEE-C----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred CCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 999999998532 233334 78999999999999 99999999999999999995432 1 222347889999
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC--ccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEE
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTR 229 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~ 229 (458)
|.+++|+|++ .+|++++.|+.|++||+.++. ++..+. + +...|.+++|+|++ +.+|++++.|+.|+
T Consensus 156 v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--------~--h~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 156 VKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLN--------G--HEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp EEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEEC--------C--CSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred eEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEcc--------C--CCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 9999999998 689999999999999987663 333332 2 45579999999973 35899999999999
Q ss_pred EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (458)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 309 (458)
+||++...... .. .|.
T Consensus 225 iw~~~~~~~~~--------------------~~-----------------------~~~--------------------- 240 (330)
T 2hes_X 225 VWKYMGDDEDD--------------------QQ-----------------------EWV--------------------- 240 (330)
T ss_dssp EEEEEEECTTS--------------------CE-----------------------EEE---------------------
T ss_pred EEEecCCCccc--------------------cc-----------------------eeE---------------------
Confidence 99987642100 00 000
Q ss_pred cccCCCCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe--EEEE-eecCC
Q 012712 310 SEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE--LIRV-IEADR 385 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~ 385 (458)
....+.+ |.. .|.+++| ++++ +|++++.||.|++|+..+++ .... +.+|.
T Consensus 241 ----------------------~~~~~~~~h~~--~v~~v~~-s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 241 ----------------------CEAILPDVHKR--QVYNVAW-GFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp ----------------------EEEECCSCCSS--CEEEEEE-CTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred ----------------------Eeeeccccccc--ceEEEEE-cCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 0111222 444 3889998 8665 89999999999999998874 3333 35787
Q ss_pred c-eeeEEEecC--CCCeEEEeecCCcEEEecCCc
Q 012712 386 H-VVNCIEPHP--HSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 386 ~-~v~~~~~s~--~~~~l~s~~~d~~i~iw~~~~ 416 (458)
. .|.+++|+| ++++||+|+.||+|++|+++.
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 6 899999999 789999999999999999864
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-43 Score=310.64 Aligned_cols=303 Identities=16% Similarity=0.188 Sum_probs=252.9
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
....+.+|.+.|++++|+|++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.||.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDC--FTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 34568899999999999999999999999999999999999988777 78999999999999 9999999999999999
Q ss_pred eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccC---CCCcceeec
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPID---DRRNYMTVV 204 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~ 204 (458)
||+.+++.... +. +...+.+++|+|++ ..+++++.+ +.|++||++.......+...... ....+....
T Consensus 101 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 101 WDVSNGQCVAT--WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EETTTCCEEEE--EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EECCCCcEEEE--ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 99998887665 33 78899999999999 678888888 99999999887654433322111 111111223
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (458)
.+.+++|+|+ ++++++++.||.|++||+++... .......|...|.+++|+|++++|++++ ++.
T Consensus 177 ~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 241 (369)
T 3zwl_B 177 AATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYE--------------YVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241 (369)
T ss_dssp CEEEEEECGG-GCEEEEEETTSEEEEEETTTTTE--------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcE--------------eEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence 7999999997 68999999999999999987321 1233445678999999999999999888 558
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
|++||+.++ .....+. +.. .+..++| +|+++++++++.
T Consensus 242 i~v~d~~~~--------------------------------------~~~~~~~-~~~--~~~~~~~-~~~~~~l~~~~~ 279 (369)
T 3zwl_B 242 SFLVDVSTL--------------------------------------QVLKKYE-TDC--PLNTAVI-TPLKEFIILGGG 279 (369)
T ss_dssp EEEEETTTC--------------------------------------CEEEEEE-CSS--CEEEEEE-CSSSSEEEEEEC
T ss_pred EEEEECCCC--------------------------------------ceeeeec-CCC--CceeEEe-cCCCceEEEeec
Confidence 999999873 3334444 222 3788998 999999999998
Q ss_pred CC--------------eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 364 CG--------------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 364 dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
++ .+++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|++..+..
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 280 QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 88 899999999999999999999999999999999999999999999999987643
No 53
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-43 Score=321.92 Aligned_cols=318 Identities=13% Similarity=0.145 Sum_probs=228.9
Q ss_pred eeeeEeecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
++.....+|...|+||+|+| ++++||+|+.||.|+|||+.+++....+ ..+|.+.|++++|+|. ++++|++++.||+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~ 188 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGT 188 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCE
Confidence 44556778999999999999 5679999999999999999877643332 2689999999999983 5789999999999
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
|++||+++...........+...+.+++|+|++ .+|++|+.||.|++||++... +..+. + +...|.++
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~~--------~--h~~~v~~v 256 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNLR--------M--HKKKVTHV 256 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCSB--------C--CSSCEEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEEe--------c--ccceEEee
Confidence 999999765443332233445567899999999 789999999999999987543 33222 1 45579999
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~ 288 (458)
+|+|++..++++++.|+.|++||+++.+.... ......|...|++++|+|+|++|++++ ++.|++||
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKAS------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSC------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccce------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 99998767899999999999999988653221 122345788999999999999999988 55899999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce-eecCccceeeeeEEEEecCCCcEEEEec-CCCe
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ-VYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGR 366 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~ 366 (458)
+.++.....+..+....... ..... .+.... .+..+.+ ++++..+++++ .++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~---~~~~~~~-~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQH---------------------LTPIKAAWHPRY---NLIVVGR-YPDPNFKSCTPYELRT 379 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSS---------------------SCCCBCEECSSS---SCEEEEC-CCCTTSCCSSTTCCCC
T ss_pred CCCCccceEEeccccccccc---------------------ceeEEEEEcCCC---CEEEEEE-cCCCCeEEEEecCCCE
Confidence 98754322211110000000 00000 011111 1233344 55555544433 4468
Q ss_pred EEEEEecCCeEEEEee-cCCceeeEE-EecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 367 IFIWKKKGGELIRVIE-ADRHVVNCI-EPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 367 i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
|++||..+++.+..+. +|...|.++ +|+|+|++||+|+ |+.|+||++++++..
T Consensus 380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 9999999999988875 677888887 6999999999876 789999999987643
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.2e-43 Score=311.80 Aligned_cols=308 Identities=12% Similarity=0.089 Sum_probs=249.9
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~ 134 (458)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+ .+|...|.+++|+| ++++|++++.||.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeC--CCCEEEEEcCCCeEEEEE
Confidence 45699999999999999999999999999999999886 66666 68999999999999 999999999999999999
Q ss_pred cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
+.+++......+..|...|.+++|+|++ .+|++++.|+.|++||++.++......... .. +...+.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~--~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK----KP--IRSTVLSLDWHPN 153 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC----TT--CCSCEEEEEECTT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeee----cc--cCCCeeEEEEcCC
Confidence 9887765555567899999999999999 789999999999999999877432222110 01 4557999999997
Q ss_pred CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~ 294 (458)
+.+|++++.||.|++||++......... .. .|... .
T Consensus 154 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------~~------------~~~~~----------------~----- 189 (372)
T 1k8k_C 154 -SVLLAAGSCDFKCRIFSAYIKEVEERPA----------PT------------PWGSK----------------M----- 189 (372)
T ss_dssp -SSEEEEEETTSCEEEEECCCTTTSCCCC----------CB------------TTBSC----------------C-----
T ss_pred -CCEEEEEcCCCCEEEEEccccccccccc----------cc------------ccccc----------------c-----
Confidence 6899999999999999997654211100 00 00000 0
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
........+.+|... +.+++| +|++++|++++.||.|++||+.+
T Consensus 190 ---------------------------------~~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 190 ---------------------------------PFGELMFESSSSCGW--VHGVCF-SANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp ---------------------------------CTTCEEEECCCCSSC--EEEEEE-CSSSSEEEEEETTTEEEEEEGGG
T ss_pred ---------------------------------chhhheEecCCCCCe--EEEEEE-CCCCCEEEEEeCCCEEEEEECCC
Confidence 002233445556654 889998 99999999999999999999999
Q ss_pred CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc--ccc---------------------------------
Q 012712 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA--ADR--------------------------------- 419 (458)
Q Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~--~~~--------------------------------- 419 (458)
++++..+..|...|.+++|+|++++|+++ .|+.|++|++.. ++.
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 99999999999999999999999988887 899999999987 320
Q ss_pred ------ccc-ccccccEEEEEEe-cCC---cEEEeeecCCceEEEEE
Q 012712 420 ------ATL-PTNIEQVCFSIYS-ADY---WWSKSQNFSCSILLFEW 455 (458)
Q Consensus 420 ------~~~-~~~~~~v~~~~~s-~d~---~~l~s~~~d~~i~~w~~ 455 (458)
..+ .+|...|++++|. ++| .+|++++.||.|++|+.
T Consensus 313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 222 4788899999966 676 99999999999999985
No 55
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-44 Score=325.60 Aligned_cols=369 Identities=14% Similarity=0.143 Sum_probs=260.9
Q ss_pred CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe-ecCCCceEEEEEec-CCCEEEEecCCC
Q 012712 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNT-DGDILISGSDDR 83 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~d~ 83 (458)
|+|+++.+++++ .|+.. |+++ ..+ .+|.+.|++++|+| ++++||+|+.|+
T Consensus 35 f~~~~~~~~~~~------~w~~~-g~~~---------------------~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg 86 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGNLR-GKLI---------------------ATLMENEPNSITSSAVSPGETPYLITGSDQG 86 (437)
T ss_dssp GCCCCCCCCCCC------GGGCC-CCEE---------------------EEECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred cCCccccccccc------ccccc-ceEE---------------------eeeccCCCCceEEEEECCCCCCEEEEecCCc
Confidence 567777776655 37644 5444 456 88999999999999 999999999999
Q ss_pred eEEEEECCC---cceee-eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc---cccceee--------eeccc
Q 012712 84 RVILWDWKT---ERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL---ERGGVET--------KLLGK 148 (458)
Q Consensus 84 ~i~iwd~~~---~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~---~~~~~~~--------~~~~~ 148 (458)
+|+|||+.+ +.... .....|...|.+++|+| ++++|++++.||.|++||+. .++.... ..+..
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred eEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 999999876 43211 12126999999999999 99999999999999999995 3333221 11111
Q ss_pred --cccceEEEE--EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 149 --HQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 149 --~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
+...+.++. ++|++ .+|++++.|+.|++||+++++....+.... +...|.+++|+|+ +.+|++|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------h~~~v~~~~~s~~-~~~l~s~~~ 234 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSP--------RHGAVSSICIDEE-CCVLILGTT 234 (437)
T ss_dssp GSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCG--------GGCCEEEEEECTT-SCEEEEEET
T ss_pred cccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCC--------CCCceEEEEECCC-CCEEEEEcC
Confidence 445566666 55677 789999999999999999998877775321 3447999999998 789999999
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC----CCCcEEEEecCC-cEEEEEccCCCCCCCCC
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS----DQSELLVSYNDE-FIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~ 299 (458)
||.|++||+++++... .+...+...|.+++|+ |++.+|++++.+ .|++||+.++.....+.
T Consensus 235 dg~i~iwd~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 235 RGIIDIWDIRFNVLIR--------------SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp TSCEEEEETTTTEEEE--------------EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEEcCCccEEE--------------EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence 9999999999865322 1222456789999554 568899999855 79999998765333322
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecC--ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 377 (458)
.+.... ....+.+++..+ ....+.+ |.. .|.+++| + ++++|++|+.||.|++||+.+++.
T Consensus 301 ~~~~~~--~~~~~~~~~~~l------------~~~~~~~~~~~~--~v~~l~~-~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 301 NSDEQP--SMEHFLPIEKGL------------EELNFCGIRSLN--ALSTISV-S-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp SSSSCC--CGGGGSCBCSSG------------GGCCCCCCCSGG--GGCCEEE-E-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cCCCCC--ccceeccccccc------------ccceecccccCC--ceEEEEE-C-CceEEEecCCCCeEEEEECCCccc
Confidence 211111 111122221111 1112334 554 4889998 8 789999999999999999999999
Q ss_pred EEEeecCCc---eeeEEEecCCCCeEEEeecCCcEEEecCCcc-cccccccccccEEEEEEecC--CcEEEeeecCCceE
Q 012712 378 IRVIEADRH---VVNCIEPHPHSTVLASSGIESDIKILTPNAA-DRATLPTNIEQVCFSIYSAD--YWWSKSQNFSCSIL 451 (458)
Q Consensus 378 ~~~~~~~~~---~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~d~~i~ 451 (458)
...+.+|.. ......+++...+++.. |+.... .......|...|++++|+++ +.+|++|+.||.|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred ceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence 999988643 45666677766665544 222222 23345568899999999999 78999999999999
Q ss_pred EEE
Q 012712 452 LFE 454 (458)
Q Consensus 452 ~w~ 454 (458)
||+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
No 56
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5e-43 Score=310.60 Aligned_cols=300 Identities=14% Similarity=0.168 Sum_probs=238.8
Q ss_pred eEeecCCCceEEEEEecCCCEE-EEecC---CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC---CeEEEEEcCC
Q 012712 55 AKLDKHRGCVNTVSFNTDGDIL-ISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAAD 127 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l-~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~d 127 (458)
..+.+|.+.|.+++|+|++..+ ++++. |+.|++||+.+++.......+|...|.+++|+| + +.+|++++.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCCCceEEEecCC
Confidence 4567899999999999999654 56665 899999999998876555458999999999999 7 6999999999
Q ss_pred CcEEEeeccccc-ceeeeeccccccceEEEEE------cCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCc
Q 012712 128 GQVRHAQILERG-GVETKLLGKHQGRAHKLAI------EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRN 199 (458)
Q Consensus 128 g~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~ 199 (458)
|.|++||+.+++ .... +.+|...|.++.| +|++ .+|++++.||.|++||+++++ ....+......
T Consensus 90 g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---- 162 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYS--VKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE---- 162 (357)
T ss_dssp SCEEEECTTSCSSCSEE--ECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTS----
T ss_pred CeEEEEeCCCCCccEEE--EEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCC----
Confidence 999999998877 4433 7789999999954 6777 689999999999999999887 45444332110
Q ss_pred ceeecceEEEE----ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC---C
Q 012712 200 YMTVVNLNAIA----IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---Q 272 (458)
Q Consensus 200 ~~~~~~v~~~~----~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~ 272 (458)
....+.+++ |+|+ +.++++++.||.|++||+++.+. .....+...|.+++|+| +
T Consensus 163 --~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 163 --NKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMAL----------------RWETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp --CCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEE----------------EEEEECSSCEEEEEESCSSSS
T ss_pred --CCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCce----------------eeecCCCCceEEEEcCCCCCC
Confidence 133678888 7787 78999999999999999988753 12234577899999999 8
Q ss_pred CcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 273 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
+.+|++++ ++.|++||+.+...... .....+.+|... |.+++|
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------------------~~~~~~~~~~~~--v~~~~~- 267 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKG---------------------------------FASVSEKAHKST--VWQVRH- 267 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTE---------------------------------EEEEEEECCSSC--EEEEEE-
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccc---------------------------------eeeeccCCCcCC--EEEEEE-
Confidence 99988888 55899999987321111 001123367664 899998
Q ss_pred cCCCc-EEEEecCCCeEEEEEecCC-------------------eEEEEeecCCceeeEEEecCCCCeEE-EeecCCcEE
Q 012712 352 GPKCE-YVVSGSDCGRIFIWKKKGG-------------------ELIRVIEADRHVVNCIEPHPHSTVLA-SSGIESDIK 410 (458)
Q Consensus 352 s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~i~ 410 (458)
+|+++ +|++++.||.|++||+.++ +++..+.+|...|++++|+|++++|+ +++.|+.|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 99998 8999999999999999754 46778889999999999999999998 899999999
Q ss_pred EecCCccc
Q 012712 411 ILTPNAAD 418 (458)
Q Consensus 411 iw~~~~~~ 418 (458)
+|++.+.+
T Consensus 348 iw~~~~~~ 355 (357)
T 3i2n_A 348 VLIVTKLN 355 (357)
T ss_dssp EEEECC--
T ss_pred EEECCCcc
Confidence 99998654
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-42 Score=315.96 Aligned_cols=326 Identities=15% Similarity=0.194 Sum_probs=261.3
Q ss_pred eeeEeecCCCce-EEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 53 IYAKLDKHRGCV-NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 53 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+ .+|.+.|.+++|+| ++ .|++++.||.|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~--~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH--GG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS--TT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcC--CC-EEEEEeCCCCEE
Confidence 445788999885 56555 5779999999999999999999988877 79999999999998 77 999999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcC--CCCeEEEEecCCCeEEEEeCCCCCccceeeecc---------------c
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP---------------I 194 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~ 194 (458)
+||+.+++.... +.+|...|.+++|++ ++ .++++++.|+.|++||++++.......... .
T Consensus 187 vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 187 VWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEECCCCcEEEE--ECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 999998876654 788999999999984 55 789999999999999999876543211100 0
Q ss_pred CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (458)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (458)
....+ +...+.++ +++ +.++++++.||.|++||+++.+. ......|...|.+++|+|+++
T Consensus 264 ~~~~~--~~~~v~~~--~~~-~~~l~~~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 264 GVLRG--HMASVRTV--SGH-GNIVVSGSYDNTLIVWDVAQMKC---------------LYILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp EEECC--CSSCEEEE--EEE-TTEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEEETTTT
T ss_pred EEccC--ccceEEEE--cCC-CCEEEEEeCCCeEEEEECCCCcE---------------EEEecCCCCCEEEEEEcCCCC
Confidence 00111 33456665 454 57999999999999999987653 223445788999999999999
Q ss_pred EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (458)
Q Consensus 275 ~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (458)
++++++ ++.|++||+.+ ......+.+|... +.++++ +
T Consensus 324 ~l~sg~~dg~i~vwd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~- 361 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLEN--------------------------------------GELMYTLQGHTAL--VGLLRL-S- 361 (464)
T ss_dssp EEEEEETTSCEEEEETTT--------------------------------------TEEEEEECCCSSC--EEEEEE-C-
T ss_pred EEEEEeCCCcEEEEECCC--------------------------------------CcEEEEEeCCCCc--EEEEEE-c-
Confidence 999988 45899999987 4566778888875 888887 5
Q ss_pred CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc--cccccccEEE
Q 012712 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT--LPTNIEQVCF 431 (458)
Q Consensus 354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~~~~v~~ 431 (458)
+++|++++.||.|++||+.+++...... |...+..++|+|++++|++++ ||.|++||+.+++... ...|...|.+
T Consensus 362 -~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~ 438 (464)
T 3v7d_B 362 -DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWS 438 (464)
T ss_dssp -SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEE
T ss_pred -CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEE
Confidence 5799999999999999999887766654 667788899999999999998 8999999999998763 5778888999
Q ss_pred EEEecCCcEEEeeecCCceEEE
Q 012712 432 SIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 432 ~~~s~d~~~l~s~~~d~~i~~w 453 (458)
++|+ +..++++++.|+.+.+|
T Consensus 439 v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 439 VNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEE-TTEEEEEEEETTEEEEE
T ss_pred EEec-CCEEEEEEEeCCeEEEE
Confidence 9997 44555666677765444
No 58
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.6e-43 Score=336.44 Aligned_cols=294 Identities=14% Similarity=0.220 Sum_probs=237.9
Q ss_pred eeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 126 (458)
.....+++|.+.|++++|+|++ ++|+||+.|++|++|++.+... ....+.+|...|.+++|+| ++++|++++.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSW 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEET
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeC
Confidence 5556789999999999999875 7999999999999999976432 1223378999999999999 9999999999
Q ss_pred CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
||.|++||+.++..... +.+|...|.+++|+|++ .+|++++.|++|++||+.......... ...+ +...|
T Consensus 451 Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~-----~~~~--h~~~v 520 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISE-----GGEG--HRDWV 520 (694)
T ss_dssp TSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS-----STTS--CSSCE
T ss_pred CCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeecc-----CCCC--CCCcE
Confidence 99999999988776654 78899999999999999 678999999999999986543222111 1112 45579
Q ss_pred EEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712 207 NAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (458)
Q Consensus 207 ~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i 284 (458)
.+++|+|++ ...+++++.|+.|++||+++.+. ......|...|.+++|+|++++|++++ ++.|
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL---------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE---------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 999999974 25899999999999999987653 234556888999999999999999998 5589
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
++||+.++ ..+..+..+. .+.+++| +|++.+|++++ +
T Consensus 586 ~iwd~~~~--------------------------------------~~~~~~~~~~---~v~~~~~-sp~~~~l~~~~-~ 622 (694)
T 3dm0_A 586 LLWDLAEG--------------------------------------KKLYSLEANS---VIHALCF-SPNRYWLCAAT-E 622 (694)
T ss_dssp EEEETTTT--------------------------------------EEEECCBCSS---CEEEEEE-CSSSSEEEEEE-T
T ss_pred EEEECCCC--------------------------------------ceEEEecCCC---cEEEEEE-cCCCcEEEEEc-C
Confidence 99999874 2223333332 3889998 99999888776 5
Q ss_pred CeEEEEEecCCeEEEEeecCC-------------------ceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 365 GRIFIWKKKGGELIRVIEADR-------------------HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~-------------------~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
+.|++||+.+++.+..+..+. ..+++++|+|+|++|++|+.||.|+||++.
T Consensus 623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 679999999999888775332 126889999999999999999999999985
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-42 Score=310.72 Aligned_cols=314 Identities=14% Similarity=0.141 Sum_probs=240.2
Q ss_pred eeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
+++.+.+.+|.+.|++++|+|++ ++|++|+.|+.|++||+.+++....+. .+|...|.+++|+|. ++++|++++.|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~ 141 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCC
Confidence 46677889999999999999999 999999999999999999888766653 369999999999982 358999999999
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
.|++||+.............|...|.+++|+|++ .+|++++.|+.|++||++ ++....+.. +...|.+
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~----------h~~~v~~ 209 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKL----------HKAKVTH 209 (383)
T ss_dssp EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEEC----------SSSCEEE
T ss_pred EEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEecc----------CCCcEEE
Confidence 9999999864333222233455889999999999 689999999999999994 554444432 4457999
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYL 286 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i 286 (458)
++|+|++..++++++.|+.|++||+++.+.... ..... .|...|.+++|+| ++++|++++ ++.|++
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS-----------YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC-----------EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc-----------eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 999998544999999999999999998542111 11112 4788999999999 999999888 558999
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~ 366 (458)
||+.+......+..+........ ......+.... .+..++| +|++++ +++.||.
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~p~~---~~~~~~~-s~dg~~--s~s~d~~ 331 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHL--------------------TPIKATWHPMY---DLIVAGR-YPDDQL--LLNDKRT 331 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTS--------------------CCCCCEECSSS---SEEEEEC-BCCTTT--CTTCCCC
T ss_pred EECCCCccccccccccccccccc--------------------cceEEeccCCC---CceEEEe-cCCccc--ccCCCCe
Confidence 99988654333221111000000 00001111111 2556777 899988 8899999
Q ss_pred EEEEEecCCeEEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 367 IFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 367 i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
|++||+.+++++..+.+ |...+..++|+|++++|++++ |+.|++|++++
T Consensus 332 i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 332 IDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999999999999987 456788889999999999997 99999999874
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-42 Score=300.38 Aligned_cols=297 Identities=18% Similarity=0.203 Sum_probs=244.0
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
.+++.+.+.+|.+.|++++| |++++|++++.||.|++||+.+++....+ ..|...|.+++|+| ++++|++++.||.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 82 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDS--EKELLLFGGKDTM 82 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEET--TTTEEEEEETTSC
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECC--CCCEEEEecCCCe
Confidence 34567789999999999999 99999999999999999999888776666 68999999999999 9999999999999
Q ss_pred EEEeecccccc-eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 130 VRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 130 i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
|++|++..... .....+..|...|.+++|+ + .++++++.|+.|++|| .++....+.. +...+.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~----------~~~~v~~ 147 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQA----------HNASVWD 147 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEEC----------CSSCEEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEeccc----------CCCceeE
Confidence 99999876532 1223377899999999993 4 5789999999999999 4444444332 4457899
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
++|.|.++.++++++.||.|++||..... ......+...+.+++|+|++.+++.+.++.|++||
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d 211 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKVI----------------KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEEE----------------EEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCceE----------------EEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEE
Confidence 99988447899999999999999944321 22233367889999999999944444467899999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
+.+ ......+.+|... +.+++| +|++ .|++++.||.|+
T Consensus 212 ~~~--------------------------------------~~~~~~~~~~~~~--i~~~~~-~~~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 212 MHT--------------------------------------GDVLRTYEGHESF--VYCIKL-LPNG-DIVSCGEDRTVR 249 (313)
T ss_dssp TTT--------------------------------------CCEEEEEECCSSC--EEEEEE-CTTS-CEEEEETTSEEE
T ss_pred CCc--------------------------------------hhhhhhhhcCCce--EEEEEE-ecCC-CEEEEecCCEEE
Confidence 987 3456677777775 899998 9999 588999999999
Q ss_pred EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc
Q 012712 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT 424 (458)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 424 (458)
+||+.+++++..+..|...|.+++|+|+++ +++++.||.|++|++.+++......
T Consensus 250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 250 IWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 999999999999999999999999999998 5678999999999999887664443
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.8e-42 Score=301.64 Aligned_cols=286 Identities=16% Similarity=0.203 Sum_probs=236.0
Q ss_pred ccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccc---eeeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712 100 HSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGG---VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (458)
+.+|.+.|++++|+| + +++|+||+.||+|++||+.+.+. .....+.+|...|.+++|+|++ .+|++++.|+.|
T Consensus 34 L~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i 110 (340)
T 4aow_A 34 LKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTL 110 (340)
T ss_dssp ECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred ECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccc
Confidence 489999999999999 7 68999999999999999987553 2334578899999999999999 789999999999
Q ss_pred EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (458)
++|+............ ....+..+.++|+ +.+|++++.|+.+++||....... ..
T Consensus 111 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~d~~~~~~~--------------~~ 165 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVG----------HTKDVLSVAFSSD-NRQIVSGSRDKTIKLWNTLGVCKY--------------TV 165 (340)
T ss_dssp EEEETTTTEEEEEEEC----------CSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEE--------------EE
T ss_pred eEEeecccceeeeecC----------CCCceeEEEEeec-CccceeecCCCeEEEEEeCCCceE--------------EE
Confidence 9999988766555442 3335778889997 689999999999999998765421 22
Q ss_pred cccccccceeEEEeCCCC--cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 256 LIGDEQVGITGLAFSDQS--ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~--~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
....|...+..++|++++ .++++++ ++.|++||+.+ .+.
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------------------------------~~~ 207 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------------------------------CKL 207 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------------------------------TEE
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------------------------------Cce
Confidence 334567889999999875 4667766 55899999987 445
Q ss_pred ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
...+.+|... |.+++| +|++++|++|+.||.|++||+.+.+++..+..+ ..|.+++|+|++.++ +++.|+.|++|
T Consensus 208 ~~~~~~h~~~--v~~~~~-s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iw 282 (340)
T 4aow_A 208 KTNHIGHTGY--LNTVTV-SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIW 282 (340)
T ss_dssp EEEECCCSSC--EEEEEE-CTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEE
T ss_pred eeEecCCCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEE
Confidence 6677788875 899998 999999999999999999999999999988855 579999999987655 56679999999
Q ss_pred cCCccccc----------ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 413 TPNAADRA----------TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 413 ~~~~~~~~----------~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
|+.++... ....|...|++++|+|||++|++|+.||.|+|||.-
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 99876432 234677889999999999999999999999999963
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-42 Score=313.28 Aligned_cols=306 Identities=21% Similarity=0.294 Sum_probs=257.1
Q ss_pred CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (458)
+.+++++|++|+.||.|++||+.+++.+ ..+.+|.+.|.+++|+ +++|++|+.|+.|
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCL---------------------RTLVGHTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEE---------------------EECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEE---------------------EEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence 4567899999999999999999988766 4578999999999998 6699999999999
Q ss_pred EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (458)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (458)
++||+.+++.+..+ .+|...|.++.|+ ++.+++++.||.|++||+.+++.... +.+|...+.++++ ++ ..
T Consensus 182 ~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~--~~-~~ 251 (445)
T 2ovr_B 182 KVWNAETGECIHTL-YGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQY--DG-RR 251 (445)
T ss_dssp EEEETTTTEEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEE--CS-SC
T ss_pred EEEECCcCcEEEEE-CCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE--EcCCcccEEEEEE--CC-CE
Confidence 99999999988777 7899999999995 45799999999999999998877655 7789999999999 44 57
Q ss_pred EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (458)
+++++.||.|++||+++++....+.. +...+.+++| + +.++++++.|+.|++||+++++..
T Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~------ 312 (445)
T 2ovr_B 252 VVSGAYDFMVKVWDPETETCLHTLQG----------HTNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCI------ 312 (445)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECC----------CSSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEE------
T ss_pred EEEEcCCCEEEEEECCCCcEeEEecC----------CCCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEE------
Confidence 89999999999999998877666542 4457899999 3 579999999999999999887532
Q ss_pred CCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
.....|...+.++.++ +.++++++ ++.|++||+.++
T Consensus 313 ---------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~-------------------------------- 349 (445)
T 2ovr_B 313 ---------HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG-------------------------------- 349 (445)
T ss_dssp ---------EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------------------------------
T ss_pred ---------EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC--------------------------------
Confidence 2334566778888774 56888877 568999999773
Q ss_pred CCcccccCceeecC---ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe-----ecCCceeeEEEecCC
Q 012712 325 ANTDVRIAPQVYKG---HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPH 396 (458)
Q Consensus 325 ~~~~~~~~~~~~~~---~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~ 396 (458)
.....+.+ |.. .|.+++| + +++|++|+.||.|++||+.+++.+..+ ..|.+.|.+++|+|+
T Consensus 350 ------~~~~~~~~~~~~~~--~v~~~~~-~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 350 ------QCLQTLQGPNKHQS--AVTCLQF-N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp ------CEEEEECSTTSCSS--CEEEEEE-C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred ------cEEEEEccCCCCCC--CEEEEEE-C--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 33445544 444 4888887 4 679999999999999999999999888 468889999999999
Q ss_pred CCeEEEeecCCc----EEEecCCcc
Q 012712 397 STVLASSGIESD----IKILTPNAA 417 (458)
Q Consensus 397 ~~~l~s~~~d~~----i~iw~~~~~ 417 (458)
+.+||+|+.||+ |.+||+...
T Consensus 419 ~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999998 999998753
No 63
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-43 Score=313.93 Aligned_cols=317 Identities=14% Similarity=0.163 Sum_probs=249.0
Q ss_pred EeecCCCceEEEEEecC----CCEEEEecCCCeEEEEECCCcceeeeec----cCCCcceeEEEEccCCC----CeEEEE
Q 012712 56 KLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTD----DRSIVT 123 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~----~~~l~s 123 (458)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+. ..|...|.+++|+| + +.+|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEEE
Confidence 34589999999999984 4556666667799999999887655542 13668899999999 7 789999
Q ss_pred EcCCCcEEEeecccccceeeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (458)
Q Consensus 124 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (458)
++.||.|++||+.+++.+.. +.+|...|.+++|+| ++ .+|++++.||.|++||+++++....+.... . +
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~--~ 160 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVE-----G--H 160 (366)
T ss_dssp EETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEECSTT-----S--C
T ss_pred ecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEecccc-----c--c
Confidence 99999999999998877655 778999999999999 66 789999999999999999887766552111 1 5
Q ss_pred ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
...|.+++|+|+ +.+|++++.||.|++||+++.+.... .. ..+.++|++..++.....
T Consensus 161 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~---------------~~------~~~~~~~~~~~~~~~~~~ 218 (366)
T 3k26_A 161 RDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNA---------------IK------ESYDYNPNKTNRPFISQK 218 (366)
T ss_dssp SSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHH---------------HH------HHHTCCGGGCSSCCCCEE
T ss_pred cCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccc---------------cc------eeEEecCCCCccccccee
Confidence 557999999997 78999999999999999987653211 00 023344544322221100
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
.+ ........+|... |.+++| + +++|++++
T Consensus 219 ---~~------------------------------------------~~~~~~~~~~~~~--v~~~~~-~--~~~l~~~~ 248 (366)
T 3k26_A 219 ---IH------------------------------------------FPDFSTRDIHRNY--VDCVRW-L--GDLILSKS 248 (366)
T ss_dssp ---EC------------------------------------------CCSEEECSSCSSC--CCEEEE-E--TTEEEEEC
T ss_pred ---ec------------------------------------------cCccccccCCcce--EEEEEE-c--CCEEEEEe
Confidence 00 1122334446554 889998 6 77999999
Q ss_pred CCCeEEEEEecCCe--------------EEEEeecCCceeeEEEecCC--CCeEEEeecCCcEEEecCCccccc-----c
Q 012712 363 DCGRIFIWKKKGGE--------------LIRVIEADRHVVNCIEPHPH--STVLASSGIESDIKILTPNAADRA-----T 421 (458)
Q Consensus 363 ~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iw~~~~~~~~-----~ 421 (458)
.||.|++||+.+++ .+..+..|...|.+++|+|+ +++|++++.||.|++|++.+++.. .
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999998764 37888899999999999999 999999999999999999987543 4
Q ss_pred cccc--cccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 422 LPTN--IEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 422 ~~~~--~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+..| ...|.+++|+|++++|++++.||.|++||..
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 5555 6889999999999999999999999999974
No 64
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-44 Score=316.34 Aligned_cols=320 Identities=9% Similarity=-0.015 Sum_probs=245.3
Q ss_pred CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
+.++.++|||+++|+++.|++|+ |.++++ .+++|...|.+++|+|+|
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------~l~gh~~~v~~V~FsPdg------- 64 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------DINCNSKNLFHVKEFPLE------- 64 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------CCSSBGGGTEEEEEECCC-------
T ss_pred EEEEEECCCCCEEEEEcCCceee--cccccc------------------------eecCCCccEEEEEECCCC-------
Confidence 35788999999999999999999 644333 246899999999999999
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc-----ceEE
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-----RAHK 155 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~v~~ 155 (458)
.++.+.+|+. +....+...|...|.+++|+| +|.+||+++.||.|++|+... .+. .+. |.. .+.+
T Consensus 65 ~~~~~~~~~~---~~~~~~~~~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~--~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 65 FENKLDFELA---QQNGLLNSQPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLT--NLD-SKGNLSSRTYHC 134 (588)
T ss_dssp CCCTTTTSCC---CSSCSSTTSCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEE--ECC-CSSCSTTTCEEE
T ss_pred CcceEEEEeC---CCceEeecCCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eee--ecc-CCCccccccEEE
Confidence 4555555553 322222225688999999999 999999999999999999544 222 245 554 5999
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeCCCCCc-------cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (458)
++|+|+| ++|++|+.||+|++||+.++.. ...+... ..+ |...|.+++|+|+ + +++++.|+.|
T Consensus 135 vafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~----~~g--h~~~V~sVawSPd-g--Laass~D~tV 204 (588)
T 2j04_A 135 FEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS----DAG--SKDWVTHIVWYED-V--LVAALSNNSV 204 (588)
T ss_dssp EEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS----CTT--CCCCEEEEEEETT-E--EEEEETTCCE
T ss_pred EEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc----ccc--ccccEEEEEEcCC-c--EEEEeCCCeE
Confidence 9999999 7899999999999999998753 1222211 112 3458999999997 5 8888999999
Q ss_pred EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
++||+...+.... ...+...|...|.+++|+ |+.||++++++|++||+.++
T Consensus 205 rlWd~~~~~~~~~-----------~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~---------------- 255 (588)
T 2j04_A 205 FSMTVSASSHQPV-----------SRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNY---------------- 255 (588)
T ss_dssp EEECCCSSSSCCC-----------EEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTT----------------
T ss_pred EEEECCCCccccc-----------eeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCC----------------
Confidence 9999987652100 011223567899999999 68899888889999998863
Q ss_pred ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE-ecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV 387 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (458)
.......+|... +..++| .+|+++.|+++++||+ ++|...
T Consensus 256 ----------------------~~~~~~~gh~~~--V~~va~~~s~d~~~La~a~edG~-klw~~d-------------- 296 (588)
T 2j04_A 256 ----------------------SISSLKTGSLEN--FHIIPLNHEKESTILLMSNKTSY-KVLLED-------------- 296 (588)
T ss_dssp ----------------------EEEEEECSCCSC--CCEEEETTCSSCEEEEECSSCEE-EEEESS--------------
T ss_pred ----------------------eEEEEEcCCCce--EEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------
Confidence 221222267764 777763 2899999999999999 999986
Q ss_pred eeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeec
Q 012712 388 VNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNF 446 (458)
Q Consensus 388 v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 446 (458)
.++++||+..+++. |+++++|+...++...+. +...|.+++|||||+.+|+++.
T Consensus 297 --~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 --ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp --SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred --cEEECCCceEEEEc--CCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 26699999988875 999999998777655444 4777999999999999998764
No 65
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=302.09 Aligned_cols=295 Identities=14% Similarity=0.153 Sum_probs=249.7
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (458)
+.+|...|++++|+| ++++|++++.||.|++||+.+++.... +.+|...|.+++|+|++ .+|++++.||.|++||
T Consensus 28 l~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWD 102 (369)
T ss_dssp EECCSSCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEE
T ss_pred EEEeeceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEE
Confidence 378999999999999 999999999999999999988877655 78899999999999998 6899999999999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
+++++....+. +...+.+++|+|+ +.++++++.+ +.|++||++............. ...
T Consensus 103 ~~~~~~~~~~~-----------~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~----~~~ 166 (369)
T 3zwl_B 103 VSNGQCVATWK-----------SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE----EPI 166 (369)
T ss_dssp TTTCCEEEEEE-----------CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS----SCS
T ss_pred CCCCcEEEEee-----------cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeeccccc----cee
Confidence 99998877765 3447999999998 6899999988 9999999987754322111000 011
Q ss_pred cccccccc--ceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712 255 NLIGDEQV--GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (458)
Q Consensus 255 ~~~~~~~~--~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (458)
.....+.. .+.+++|+|++++|++++ ++.|++||+.+. ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------------------------~~ 209 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------------------------------YE 209 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------------------------------TE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------------------------------cE
Confidence 12223334 899999999999999888 558999998763 23
Q ss_pred CceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC----
Q 012712 332 APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---- 407 (458)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---- 407 (458)
....+..|... +.+++| +|++++|++++.||.|++||+.+++.+..+. +...+..++|+|+++++++++.++
T Consensus 210 ~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (369)
T 3zwl_B 210 YVDSIDLHEKS--ISDMQF-SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDV 285 (369)
T ss_dssp EEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC----
T ss_pred eEEEEecCCCc--eeEEEE-CCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceE
Confidence 45566667664 899998 9999999999999999999999999998887 777899999999999999999888
Q ss_pred ----------cEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 408 ----------DIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 408 ----------~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.+++|+..+++.. .+..|...|.+++|+|++++|++++.||.|++|++-
T Consensus 286 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 286 TTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp ---------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 8999999888665 567788999999999999999999999999999973
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-41 Score=307.13 Aligned_cols=283 Identities=16% Similarity=0.251 Sum_probs=229.3
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
.++++ .+||+|. |++|+|||..+|++... ..+.+|...|++|+|+|+|++||+|+.|+.
T Consensus 112 ~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-------------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 112 DWSSG-NVLAVAL-DNSVYLWSASSGDILQL-------------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp EECTT-SEEEEEE-TTEEEEEETTTCCEEEE-------------------EECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred EECCC-CEEEEEe-CCEEEEEECCCCCEEEE-------------------EEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 34554 4778776 99999999999987632 235678899999999999999999999999
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (458)
|+|||+.+++.+..+ .+|...+.++.+ ++..|++++.|+.+++|+........ ..+.+|...+..+.++|++ .
T Consensus 171 v~iWd~~~~~~~~~~-~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~-~~~~~h~~~~~~~~~~~~g-~ 243 (420)
T 4gga_A 171 VQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG-R 243 (420)
T ss_dssp EEEEETTTTEEEEEE-CCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-S
T ss_pred EEEEEcCCCcEEEEE-eCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceee-EEecccccceeeeeecCCC-C
Confidence 999999999988877 789999998887 55799999999999999988765443 3478899999999999999 6
Q ss_pred EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe--cCCCeEEEEecCCCccCCCc
Q 012712 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--GSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~ 242 (458)
++++++.|+.+++|+..+++........ ...+...|.+++|+|.+..+++++ +.|+.|++||+++++..
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~--- 314 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQT------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--- 314 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEE------ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE---
T ss_pred eeeeeeccccceEEeeccccccceeeee------ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc---
Confidence 8999999999999999887643221100 011455789999999877777654 57899999998765310
Q ss_pred cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (458)
T Consensus 315 -------------------------------------------------------------------------------- 314 (420)
T 4gga_A 315 -------------------------------------------------------------------------------- 314 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec--CCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE
Q 012712 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL 400 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 400 (458)
..+..+. .+.++.| +|+++.+++++ .|+.|++||+.+++++.++.+|.+.|++++|+|||++|
T Consensus 315 -----------~~~~~~~---~v~~~~~-~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 315 -----------SAVDAHS---QVCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379 (420)
T ss_dssp -----------EEEECSS---CEEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred -----------eeecccc---ceeeeee-cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 0111111 2667777 88888887654 78999999999999999999999999999999999999
Q ss_pred EEeecCCcEEEecCCcccc
Q 012712 401 ASSGIESDIKILTPNAADR 419 (458)
Q Consensus 401 ~s~~~d~~i~iw~~~~~~~ 419 (458)
|||+.|++|+||++.....
T Consensus 380 ~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 380 ASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEEETTTEEEEECCSCSSC
T ss_pred EEEecCCeEEEEECCCCCc
Confidence 9999999999999976543
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-41 Score=311.79 Aligned_cols=309 Identities=20% Similarity=0.241 Sum_probs=249.7
Q ss_pred CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (458)
Q Consensus 7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (458)
.+++.+|++|+.||.|++||+.+++.+ ..+.+|.+.|.+++|+|++ +|++|+.|++|+
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~---------------------~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFL---------------------LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEE---------------------EEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEE---------------------EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 446789999999999999999988765 4578999999999999988 999999999999
Q ss_pred EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee---------------------eee
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE---------------------TKL 145 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~---------------------~~~ 145 (458)
+||+++++.+..+ .+|...|.+++|++..++.++++++.||.|++||+.+..... ...
T Consensus 187 vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 187 VWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 9999999987777 789999999999954488999999999999999998765331 234
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
+.+|...+.++ ++++ .++++++.|+.|++||+++++....+.. +...+.+++|+|+ +.++++|+.|
T Consensus 266 ~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~sg~~d 331 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSG----------HTDRIYSTIYDHE-RKRCISASMD 331 (464)
T ss_dssp ECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEETT-TTEEEEEETT
T ss_pred ccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCCEEEEEEcCC-CCEEEEEeCC
Confidence 66788888877 4556 6799999999999999999887766543 4457999999997 7899999999
Q ss_pred CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcc
Q 012712 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVS 304 (458)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~ 304 (458)
|.|++||+++++. ......|...|.+++|+ +.+|++++ ++.|++||+.+..
T Consensus 332 g~i~vwd~~~~~~---------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~----------- 383 (464)
T 3v7d_B 332 TTIRIWDLENGEL---------------MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS----------- 383 (464)
T ss_dssp SCEEEEETTTTEE---------------EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-----------
T ss_pred CcEEEEECCCCcE---------------EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc-----------
Confidence 9999999988763 23345578899999997 46788777 5689999998631
Q ss_pred ccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE-eec
Q 012712 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEA 383 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~ 383 (458)
...... +.. .+..++| +|++++|++|+ ||.|++||+.+++.+.. +..
T Consensus 384 ---------------------------~~~~~~-~~~--~~~~~~~-~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 384 ---------------------------RKFSYH-HTN--LSAITTF-YVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp ---------------------------EEEEEE-CTT--CCCEEEE-EECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred ---------------------------eeeeec-CCC--CccEEEE-EeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 111111 222 2556676 99999999998 89999999999999886 667
Q ss_pred CCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 384 DRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
|...|.+++|+ +..++++++.||.+.+|-
T Consensus 432 ~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 432 DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 88999999997 345556666677665553
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-41 Score=326.54 Aligned_cols=302 Identities=17% Similarity=0.202 Sum_probs=231.3
Q ss_pred CCCCCC-CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 4 ~~~~~~-~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
+.++|+ +.+|+||+.|++|+|||+.++..... ...+.+.+|.+.|.+++|+|++++|++|+.|
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~----------------~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYG----------------VAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSC----------------EEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccc----------------cccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 456665 57899999999999999986543211 2235688999999999999999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee-eeccccccceEEEEEcCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~ 161 (458)
++|+|||+.++.....+ .+|...|.+++|+| ++++|++++.|++|++||......... ....+|...|.+++|+|+
T Consensus 452 g~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRF-VGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp SEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CcEEEEECCCCcceeEE-eCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 99999999999887777 79999999999999 999999999999999999865432221 123578899999999998
Q ss_pred C-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712 162 S-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (458)
Q Consensus 162 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (458)
+ ...+++++.|+.|++||+++++....+.. |...|.+++|+|+ +.+|++|+.||.|++||+++++...
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEE
Confidence 6 24799999999999999998877665542 4557999999998 7899999999999999999876422
Q ss_pred CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
. ..+...+.+++|+|++.++++++++.|++||+.++.....+..........
T Consensus 598 ~----------------~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~------------ 649 (694)
T 3dm0_A 598 S----------------LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK------------ 649 (694)
T ss_dssp C----------------CBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-----------------
T ss_pred E----------------ecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccc------------
Confidence 1 113457999999999999999999999999998754322211000000000
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
...............+.+++| +|+|++|++|+.||+|++|++.
T Consensus 650 ---------~~~~~~~~~~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 ---------ADNSGPAATKRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------------------CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred ---------ccccccccCCceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEecc
Confidence 000000000111123788998 9999999999999999999984
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-42 Score=310.37 Aligned_cols=304 Identities=14% Similarity=0.116 Sum_probs=228.2
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~ 134 (458)
++.|.++|++++|+|++++||+++.|+.|++||+.++ +.+..+ .+|...|.+++|+| ++++|++++.|+.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAP--KSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECT--TTCCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeC--CCCEEEEEeCCCeEEEEE
Confidence 4557789999999999999999999999999999987 555555 78999999999999 999999999999999999
Q ss_pred ccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc---cceeeecccCCCCcceeecceEEEE
Q 012712 135 ILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 135 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
+.+++ ......+..|...|.+++|+|++ .+|++++.|+.|++||+++++. ...+... +...|.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~~v~~~~ 153 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------LRSTILSLD 153 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSS---------CCSCEEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecc---------cCCCeEEEE
Confidence 98876 22334477899999999999998 6889999999999999998864 3333210 345799999
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~ 290 (458)
|+|+ +.+|++++.|+.|++||++..+...... . .+.+..+
T Consensus 154 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~---------------~~~~~~~-------------- 193 (377)
T 3dwl_C 154 WHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPE----------A---------------SVWGSRL-------------- 193 (377)
T ss_dssp ECTT-SSEEEEEESSSCEEEEEECCSSCC-CCC----------S---------------CSSCSCC--------------
T ss_pred EcCC-CCEEEEEeCCCEEEEEEEEecccCCCcc----------c---------------ccccccc--------------
Confidence 9997 7899999999999999998654221100 0 0000000
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
........+ +|... |.+++| +|++++|++++.||.|++|
T Consensus 194 -------------------------------------~~~~~~~~~-~~~~~--v~~~~~-sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 194 -------------------------------------PFNTVCAEY-PSGGW--VHAVGF-SPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp -------------------------------------CEEEEEECC-CCSSS--EEEEEE-CTTSSCEEEEETTTEEC-C
T ss_pred -------------------------------------chhhhhhcc-cCCce--EEEEEE-CCCCCEEEEEeCCCcEEEE
Confidence 001222333 56554 899998 9999999999999999999
Q ss_pred EecCCeE----EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc-c--------------------------
Q 012712 371 KKKGGEL----IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD-R-------------------------- 419 (458)
Q Consensus 371 d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~-~-------------------------- 419 (458)
|+.+++. +..+.+|...|.+++|+|++++|++++.++.+ +|+..... .
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE 311 (377)
T ss_dssp EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence 9999887 78889999999999999999999999877666 55554111 0
Q ss_pred ----------c----------------ccccccccEEEEEEecCC-c---EEEeeecCCceEEEEE
Q 012712 420 ----------A----------------TLPTNIEQVCFSIYSADY-W---WSKSQNFSCSILLFEW 455 (458)
Q Consensus 420 ----------~----------------~~~~~~~~v~~~~~s~d~-~---~l~s~~~d~~i~~w~~ 455 (458)
. ....|...|+++++.++. . .++|++.||.|++||+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 011288889999976554 3 6999999999999984
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-43 Score=312.26 Aligned_cols=251 Identities=11% Similarity=0.105 Sum_probs=192.7
Q ss_pred CCCCCCCCCCCeEEEeeCCCcEEEEEcccc--ccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE
Q 012712 1 MDDASNNNNNKRARTSVDKALVDVWLRELG--QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (458)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (458)
|..+.|+|++++|++|+.|+.|+|||+.++ +.+ ..+.+|.+.|.+++|+|++++|++
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA---------------------RTFSDHDKIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC---------------------CCBCCCSSCEEEEEECTTTCCEEE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE---------------------EEEecCCceEEEEEEeCCCCEEEE
Confidence 346789999999999999999999999976 333 457899999999999999999999
Q ss_pred ecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccc-cccce
Q 012712 79 GSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGK-HQGRA 153 (458)
Q Consensus 79 ~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~-~~~~v 153 (458)
++.|+.|++||+.+++ ....+ .+|...|.+++|+| ++++|++++.|+.|++||+.+++.. ....+.. |...|
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v 149 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI 149 (377)
T ss_dssp EETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence 9999999999999877 44444 68999999999999 9999999999999999999887631 1122555 99999
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceee----------ecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT----------CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
.+++|+|++ .+|++++.|+.|++||++..+...... ....... .+...|.+++|+|+ +.+|++++
T Consensus 150 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~-~~~l~~~~ 224 (377)
T 3dwl_C 150 LSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPS-GNALAYAG 224 (377)
T ss_dssp EEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTT-SSCEEEEE
T ss_pred EEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCC-CCEEEEEe
Confidence 999999998 789999999999999997543211100 0000001 15567999999998 68999999
Q ss_pred CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
.||.|++||+++.+... ........|...|.+++|+|++++|++++++.+.+|+...
T Consensus 225 ~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 225 HDSSVTIAYPSAPEQPP-----------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp TTTEEC-CEECSTTSCE-----------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred CCCcEEEEECCCCCCcc-----------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 99999999999875310 0022344577889999999999999999999888998764
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-41 Score=300.09 Aligned_cols=289 Identities=10% Similarity=0.077 Sum_probs=220.1
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCC-------cEEEeecccccce--------eeeeccccccceEEEEEcCCCCeEEEE
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADG-------QVRHAQILERGGV--------ETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg-------~i~vw~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (458)
..+|++++|+| |+++|++|+.+. .|++|++...... ....+..|...+.+++++++ .+++
T Consensus 14 g~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---IILV 88 (365)
T ss_dssp SSCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---EEEE
T ss_pred CCCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---EEEE
Confidence 45899999999 999999987543 5999998765431 12346678888888877653 3454
Q ss_pred e-----------cCCCeEEEEeCCCCCcccee-eecccCCCCcceeecceEEEEECCCCCcEEE--EecCCCeEEEEecC
Q 012712 169 C-----------GEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFA--VAGSDEYTRLYDIR 234 (458)
Q Consensus 169 ~-----------~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~--~~~~dg~i~i~d~~ 234 (458)
+ +.|+.+++|++......... ...... ........+.+++|+|| +++++ +++.|+.|++||++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~fSpD-g~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFD--ASTNADDYTKLVYISRE-GTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSS--CCCCTTCCEEEEEECTT-SSCEEEEESCSSCEEEEEETT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeecee--ecCCcccCEEEEEEcCC-CCEEEEEECCCCCEEEEeECC
Confidence 4 45788999998765432221 111111 11113345789999998 56765 45578999999999
Q ss_pred CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
+.+... ...|...|.+++|+|+|+++++++++.+.+|+..++..
T Consensus 166 ~~~~~~----------------~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~-------------------- 209 (365)
T 4h5i_A 166 DLTEKF----------------EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC-------------------- 209 (365)
T ss_dssp TTEEEE----------------EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE--------------------
T ss_pred CCcEEE----------------EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc--------------------
Confidence 876321 11356789999999999999999999999998776321
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC----eEEEEEecCCeE----EEEeecCCc
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG----RIFIWKKKGGEL----IRVIEADRH 386 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~ 386 (458)
.......+|.. .+.+++| +|+++++++++.|+ .+++|++..... ...+.+|..
T Consensus 210 ----------------~~~~~~~~~~~--~v~~v~f-spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 210 ----------------IARKTDFDKNW--SLSKINF-IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp ----------------EEEECCCCTTE--EEEEEEE-EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred ----------------eeeeecCCCCC--CEEEEEE-cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 11122334544 4899998 99999999998887 688999877653 356778999
Q ss_pred eeeEEEecCCCCeEEEeecCCcEEEecCCccccc-c-cccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 387 VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-T-LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~-~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.|++++|+|||++||+|+.|++|+|||+.+++++ . +.+|...|++++|||||++|||++.|++|+||+.
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9999999999999999999999999999998776 3 4679999999999999999999999999999996
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-41 Score=303.82 Aligned_cols=297 Identities=10% Similarity=0.052 Sum_probs=234.2
Q ss_pred CCcceeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712 91 KTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (458)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (458)
........+ .+|...|++++|+| ++ ++|++++.||.|++||+.+++........+|...|.+++|+|++..+|+++
T Consensus 61 ~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 61 KSYKLHRTA-SPFDRRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp TTCEEEEEE-CCCSSCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred cccceEEec-cCCCCCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 344444444 78999999999999 88 899999999999999999887766644557999999999999444889999
Q ss_pred cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (458)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (458)
+.|+.|++||++. .....+..... +...+.+++|+|+ +.+|++++.|+.|++||++...
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~-------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~------------ 196 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDS-------WDYWYCCVDVSVS-RQMLATGDSTGRLLLLGLDGHE------------ 196 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCC-------SSCCEEEEEEETT-TTEEEEEETTSEEEEEETTSCE------------
T ss_pred eCCCEEEEEECCC-CceEEEeccCC-------CCCCeEEEEECCC-CCEEEEECCCCCEEEEECCCCE------------
Confidence 9999999999985 33333332111 3357999999998 7899999999999999995321
Q ss_pred CcCCCccccccccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712 250 YFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (458)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (458)
......|...|.+++|+|+++ +|++++ ++.|++||+.+....
T Consensus 197 ----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------------------- 240 (383)
T 3ei3_B 197 ----IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------------------------------- 240 (383)
T ss_dssp ----EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--------------------------------
T ss_pred ----EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--------------------------------
Confidence 233445788999999999998 888888 558999999874221
Q ss_pred ccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEEEEeecCC-----------------ceee
Q 012712 328 DVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-----------------HVVN 389 (458)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~v~ 389 (458)
......+ +|.. .+.+++| +| ++++|++++.|+.|++||+.+++.+..+.+|. ..+.
T Consensus 241 --~~~~~~~-~~~~--~v~~~~~-s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 241 --NSYIAEM-PHEK--PVNAAYF-NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp --TCEEEEE-ECSS--CEEEEEE-CTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred --cceEEEe-cCCC--ceEEEEE-cCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 1122333 4555 4899999 99 99999999999999999999988777776553 2344
Q ss_pred EEEecCCCCeEEEeecCCcEEEecCCccccc-cccc--ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 390 CIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPT--NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~--~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.++|+|++++ +++.|+.|++||+.+++.. .+.. +...+..++|+|++.+|++++ |+.|++||.-
T Consensus 315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp EEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred EEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 5777788777 7889999999999988765 4443 455677889999999999997 9999999963
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.4e-41 Score=288.46 Aligned_cols=269 Identities=16% Similarity=0.246 Sum_probs=201.8
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+ +.+..+ .+|.+.|.+++|+|..++++|++++.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 457899999999999999999999999999999999753 444555 79999999999986213789999999999999
Q ss_pred eecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
||+.+++......+..|...|.+++|+|+ + .+|++++.|+.|++||++++........ .+ +...|.+++
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~------~~--h~~~v~~~~ 152 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIII------DA--HAIGVNSAS 152 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEE------EC--CSSCEEEEE
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeee------ec--ccCccceEe
Confidence 99987754333447789999999999997 5 6899999999999999987643211111 11 445799999
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEc
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~ 289 (458)
|+|+. ..- ++ .. ...+++++|++++ ++.|++||+
T Consensus 153 ~~p~~-~~~-----~~--------~~-------------------------------~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 153 WAPAT-IEE-----DG--------EH-------------------------------NGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp ECCCC---------------------------------------------------------CCEEEEEETTSCEEEEEE
T ss_pred ecCCc-ccc-----cc--------cC-------------------------------CCCCCcceEEEEcCCCcEEEEEE
Confidence 99962 100 00 00 0012345566655 345677766
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC---cEEEEecCCCe
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGR 366 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~---~~l~~~~~dg~ 366 (458)
.++... ......+.+|... |.+++| +|++ ++|++++.|++
T Consensus 188 ~~~~~~----------------------------------~~~~~~l~~H~~~--V~~v~~-sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 188 NSDAQT----------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp ETTTTE----------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSSSEEEEEEETTSC
T ss_pred cCCCce----------------------------------EEEEEEecCCCCc--eEEEEE-CCCCCCceEEEEEECCCc
Confidence 542100 1133456778774 899999 9984 89999999999
Q ss_pred EEEEEecCCe---EEEEe--ecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 367 IFIWKKKGGE---LIRVI--EADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 367 i~iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
|++||+.+.. ....+ ..|...|.+++|+|++++||+++.|+.|++|+..
T Consensus 231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999997643 22333 4678899999999999999999999999999875
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-41 Score=309.05 Aligned_cols=302 Identities=14% Similarity=0.084 Sum_probs=243.6
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
.+++++|+|++++|++++.|+.|++||+.+++....+ ..| ..+....|+| ++++|++++.||.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECS--SSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEec--CCCEEEEEECCCCEEEEeCCCcceee
Confidence 3458999999999999999999999999988775554 344 4455557888 99999999999999999998776554
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
. +..|...|.+++|+|++ .+|++++.|+.|++||+++++....+.. +...|.+++|+|+ +.+|+++
T Consensus 134 ~--~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~ 199 (420)
T 3vl1_A 134 I--DQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIG----------HRATVTDIAIIDR-GRNVLSA 199 (420)
T ss_dssp E--TTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEEC----------CSSCEEEEEEETT-TTEEEEE
T ss_pred e--cccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcC----------CCCcEEEEEEcCC-CCEEEEE
Confidence 3 77899999999999998 6899999999999999999987776653 4557999999998 7899999
Q ss_pred cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~ 302 (458)
+.|+.|++||+++++..... .....+...+.+++|.|.+...
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~-------------------------- 241 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTF------------NRKENPHDGVNSIALFVGTDRQ-------------------------- 241 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEE------------CBTTBTTCCEEEEEEEECCCSS--------------------------
T ss_pred cCCCcEEEeECCCCceeEEe------------ecCCCCCCCccEEEEecCCcce--------------------------
Confidence 99999999999987643221 1112345677888877654211
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 382 (458)
....+.. .+.+++| +|++++|++|+.||.|++||+.+++.+..+.
T Consensus 242 --------------------------------~~~~~~~--~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 242 --------------------------------LHEISTS--KKNNLEF-GTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp --------------------------------CGGGCCC--CCCTTCS-SCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred --------------------------------eeecccC--cccceEE-cCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 0111112 2667777 9999999999999999999999998877764
Q ss_pred -cCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcccc--ccccc-ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 383 -ADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADR--ATLPT-NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 383 -~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~--~~~~~-~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.|...|.+++|+|+++ +|++++.||.|++||+.+++. ..+.. |...+..+ ++|++.+|++++.|+.|++|+.-
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEEC
T ss_pred cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEecc
Confidence 5788999999999999 999999999999999998754 34444 55567777 55688999999999999999964
No 75
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-42 Score=312.85 Aligned_cols=293 Identities=16% Similarity=0.251 Sum_probs=237.1
Q ss_pred CceEEEEEecCCC-EEEEe----------cCCCeEEEEECCCcce---eeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 62 GCVNTVSFNTDGD-ILISG----------SDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 62 ~~v~~~~~s~~~~-~l~s~----------~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
..|.+++|+|+++ +|+++ +.|+.|++||+.+++. +.. ..|...|.+++|+| ++++|++++.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~--~~~~l~~~~~d 88 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSH--NNKIIAGALDN 88 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECS--SSSCEEEEESS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECC--CCCeEEEEccC
Confidence 4688999999987 99999 8899999999998763 333 36889999999999 99999999999
Q ss_pred CcEEEeecccc--cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC------ccceeeecccCCCCc
Q 012712 128 GQVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA------ATELFTCRPIDDRRN 199 (458)
Q Consensus 128 g~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~ 199 (458)
|.|++|++... .......+..|...|.+++|+|++..+|++++.|+.|++||+++++ ....+. ....
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~~~~ 163 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-----QSMS 163 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-----CSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc-----cccC
Confidence 99999999872 1112234788999999999999844789999999999999999876 222111 0111
Q ss_pred ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (458)
+...+.+++|+|+++.++++++.|+.|++||+++.+.. ..+...
T Consensus 164 --~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-------------------------~~~~~~--------- 207 (416)
T 2pm9_A 164 --SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV-------------------------IHLSYT--------- 207 (416)
T ss_dssp --SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE-------------------------EEECCC---------
T ss_pred --CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc-------------------------eEEecc---------
Confidence 44578999999986789999999999999999775421 000000
Q ss_pred cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEE
Q 012712 280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYV 358 (458)
Q Consensus 280 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l 358 (458)
....+|.. .+.+++| +|++ .++
T Consensus 208 ------------------------------------------------------~~~~~~~~--~v~~~~~-~~~~~~~l 230 (416)
T 2pm9_A 208 ------------------------------------------------------SPNSGIKQ--QLSVVEW-HPKNSTRV 230 (416)
T ss_dssp ------------------------------------------------------CCSSCCCC--CEEEEEE-CSSCTTEE
T ss_pred ------------------------------------------------------ccccccCC--ceEEEEE-CCCCCCEE
Confidence 00012233 3889998 9997 689
Q ss_pred EEecCCC---eEEEEEecCC-eEEEEee-cCCceeeEEEecC-CCCeEEEeecCCcEEEecCCccccc-ccccccccEEE
Q 012712 359 VSGSDCG---RIFIWKKKGG-ELIRVIE-ADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCF 431 (458)
Q Consensus 359 ~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~ 431 (458)
++++.|+ .|++||+.++ +++..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.. .+..|...|.+
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~ 310 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK 310 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC
T ss_pred EEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE
Confidence 9999998 9999999986 6777888 8999999999999 9999999999999999999988665 56778889999
Q ss_pred EEEecCC-cEEEeeecCCceEEEEEe
Q 012712 432 SIYSADY-WWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 432 ~~~s~d~-~~l~s~~~d~~i~~w~~~ 456 (458)
++|+|++ .+|++++.|+.|++|+.-
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESC
T ss_pred EEECCCCCCEEEEEecCCcEEEEEcc
Confidence 9999999 899999999999999963
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-41 Score=307.80 Aligned_cols=291 Identities=10% Similarity=0.070 Sum_probs=227.0
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.+|...|++++|+|. ++++||+|+.||.|+|||+.+++......+.+|.+.|++++|+|.+..+|++++.||+|++||+
T Consensus 116 ~~~~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 116 APFDRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EECSSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 568889999999982 4678999999999999999887766555577899999999999965478999999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
+++....... . +.....+.+++|+|+ +.+|++|+.||.|++||++... ......|
T Consensus 195 ~~~~~~~~~~-~-------~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~----------------~~~~~~h 249 (435)
T 4e54_B 195 KGNILRVFAS-S-------DTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKE----------------LWNLRMH 249 (435)
T ss_dssp TSCEEEEEEC-C-------SSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCB----------------CCCSBCC
T ss_pred cCCceeEEec-c-------CCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcce----------------eEEEecc
Confidence 8654322221 1 113345788999998 7899999999999999987543 1234457
Q ss_pred ccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 261 QVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 261 ~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
...|.+++|+|++. ++++++ ++.|++||+.+..... ......+
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-----------------------------------~~~~~~~ 294 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-----------------------------------SFLYSLP 294 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-----------------------------------CCSBCCB
T ss_pred cceEEeeeecCCCceEEEEecCcceeeEEecccccccc-----------------------------------eEEEeee
Confidence 88999999999986 677777 5689999998743221 1223345
Q ss_pred ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc------eeeEEEecCCCCeEEEee--------
Q 012712 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH------VVNCIEPHPHSTVLASSG-------- 404 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~-------- 404 (458)
|... |.+++| +|+|++|++++.||.|++||+.+++....+..|.. .+....|+|++.++++++
T Consensus 295 h~~~--v~~~~~-spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 371 (435)
T 4e54_B 295 HRHP--VNAACF-SPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKS 371 (435)
T ss_dssp CSSC--EEECCB-CTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred cccc--ccceeE-CCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence 6664 899998 99999999999999999999999988887766643 234556777777666653
Q ss_pred ----cCCcEEEecCCcccccc--cccccccEEEE-EEecCCcEEEeeecCCceEEEEEe
Q 012712 405 ----IESDIKILTPNAADRAT--LPTNIEQVCFS-IYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 405 ----~d~~i~iw~~~~~~~~~--~~~~~~~v~~~-~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.++.|++||..+++... ...|...|.++ +|+|+|.+|++|+ |+.|+||+.-
T Consensus 372 ~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 372 CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 34679999999987663 24577778887 6999999999876 7899999863
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=287.01 Aligned_cols=282 Identities=15% Similarity=0.234 Sum_probs=224.7
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (458)
+.+|+++ +||+|. |++|+|||+++|+++.. ..+.+|...|++++|+|++++||+|+.|+
T Consensus 31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~-------------------~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-------------------LQMEQPGEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp EEECTTS-EEEEEE-TTEEEEEETTTCCEEEE-------------------EECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCCC-EEEEEe-CCEEEEEECCCCCEEEE-------------------EEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence 3467775 777776 99999999999987633 23467889999999999999999999999
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (458)
+|++||+++++.+..+ .+|...+.++.+ ++..+++++.++.+++|+........ ..+.+|...+..+.+.+++
T Consensus 90 ~v~iw~~~~~~~~~~~-~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 162 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG- 162 (318)
T ss_dssp EEEEEETTTTEEEEEE-ECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-
T ss_pred cEEEeecCCceeEEEe-cCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeE-EEEcCccCceEEEEEcCCC-
Confidence 9999999999988877 789888877655 56799999999999999987765443 3377899999999999999
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE--EEecCCCeEEEEecCCCccCCC
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF--AVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l--~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
.++++++.|+.|++||+++++......... ..+...+.+++++|++...+ ++++.++.|++||.+.....
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-- 234 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-- 234 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEE------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--
T ss_pred CEEEEEecCcceeEEECCCCcccccceeee------cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--
Confidence 689999999999999999876543322111 01344688899998765554 45667888999987654210
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
T Consensus 235 -------------------------------------------------------------------------------- 234 (318)
T 4ggc_A 235 -------------------------------------------------------------------------------- 234 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe--cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCe
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG--SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 399 (458)
... .+.. .+..+.| +|+++.++++ +.|+.|++||+.+++++.++.+|.+.|++++|+|++++
T Consensus 235 ------------~~~-~~~~--~v~~~~~-~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 235 ------------SAV-DAHS--QVCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298 (318)
T ss_dssp ------------EEE-ECSS--CEEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred ------------ccc-ccee--eeeeeee-cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 000 0111 2566777 8888877654 47999999999999999999999999999999999999
Q ss_pred EEEeecCCcEEEecCCcc
Q 012712 400 LASSGIESDIKILTPNAA 417 (458)
Q Consensus 400 l~s~~~d~~i~iw~~~~~ 417 (458)
||||+.||+|+|||+.+.
T Consensus 299 l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 299 VASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEETTTEEEEECCSCC
T ss_pred EEEEecCCeEEEEECCCC
Confidence 999999999999998754
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-40 Score=284.83 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=207.4
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEE
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQH 177 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~i 177 (458)
+.+|...|++++|+| ++++|++++.|+.|++|++..........+.+|..+|.+++|+|+ + .+|++++.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY--YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECC--CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEE
Confidence 478999999999999 999999999999999999975433233448899999999999864 5 78999999999999
Q ss_pred EeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (458)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (458)
||+++++........ + +...|.+++|+|+. +.+|++++.|+.|++||+++.... ....
T Consensus 82 Wd~~~~~~~~~~~~~------~--h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-------------~~~~ 140 (297)
T 2pm7_B 82 WKEENGRWSQIAVHA------V--HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-------------SPII 140 (297)
T ss_dssp EEBSSSCBCCCEEEC------C--CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-------------CCEE
T ss_pred EEcCCCceEEEEEee------c--CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-------------eeee
Confidence 999887532222111 1 44579999999962 579999999999999999865311 0123
Q ss_pred ccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
...|...|.+++|+|++..-. .
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~----------------------------------------------------~------ 162 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEED----------------------------------------------------G------ 162 (297)
T ss_dssp EECCSSCEEEEEECCCC---------------------------------------------------------------
T ss_pred eecccCccceEeecCCccccc----------------------------------------------------c------
Confidence 455778899999998752100 0
Q ss_pred cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe----EEEEeecCCceeeEEEecCCC---CeEEEeecCCcE
Q 012712 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE----LIRVIEADRHVVNCIEPHPHS---TVLASSGIESDI 409 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~i 409 (458)
.+ .. .+++++|++|+.|++|++||+.+++ ....+.+|...|.+++|+|++ ++||+++.|++|
T Consensus 163 -~~---------~~-~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 163 -EH---------NG-TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp ------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred -cC---------CC-CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 00 01 3467899999999999999998765 667889999999999999995 899999999999
Q ss_pred EEecCCccc------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 410 KILTPNAAD------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 410 ~iw~~~~~~------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+||++.... ......|...|.+++|+|+|++||+++.|+.|+||+..
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999987642 11224677789999999999999999999999999864
No 79
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-41 Score=300.63 Aligned_cols=290 Identities=10% Similarity=0.065 Sum_probs=218.4
Q ss_pred CCceEEEEEecCCCEEEEecCC-------CeEEEEECCCccee--------e-eeccCCCcceeEEEEccCCCCeEEEEE
Q 012712 61 RGCVNTVSFNTDGDILISGSDD-------RRVILWDWKTERVK--------L-SFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~--------~-~~~~~~~~~i~~~~~~~~~~~~~l~s~ 124 (458)
.-||.+++|+||+++|++|+.+ +.|++|++..+... . ..+.+|...+.++++. ++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIILVG 89 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEEEE
Confidence 4589999999999999998754 36999998765321 1 1135788888888774 4455554
Q ss_pred -----------cCCCcEEEeecccccceeee-------eccccccceEEEEEcCCCCeEE-EEecCCCeEEEEeCCCCCc
Q 012712 125 -----------AADGQVRHAQILERGGVETK-------LLGKHQGRAHKLAIEPGSPHVF-YTCGEDGLVQHFDLRTGAA 185 (458)
Q Consensus 125 -----------~~dg~i~vw~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~ 185 (458)
+.|+.+++|++......... ....+...+.+++|+|||..++ ++++.|++|++||+++++.
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 45788999998765432211 1223445688999999995432 3556799999999999887
Q ss_pred cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccccee
Q 012712 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT 265 (458)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (458)
...+. +...|.+++|+|+ ++++++++.+ .+++|+..+++... ......|...|.
T Consensus 170 ~~~~~-----------~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~v~ 223 (365)
T 4h5i_A 170 KFEIE-----------TRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIA-------------RKTDFDKNWSLS 223 (365)
T ss_dssp EEEEE-----------CSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEE-------------EECCCCTTEEEE
T ss_pred EEEeC-----------CCCceEEEEEccC-CceEEeccce-eEEEEEeccCccee-------------eeecCCCCCCEE
Confidence 76654 4457999999998 7899988865 46667666554211 123345677899
Q ss_pred EEEeCCCCcEEEEec-CC----cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712 266 GLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (458)
Q Consensus 266 ~~~~~~~~~~l~~~~-~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
+++|+|+++++++++ ++ .+++|++..... .......+.+|.
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~~~~~~ 269 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------------------------------SVLRSKQVTNRF 269 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------------------------------EEEEEEEEESSC
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeeccccccee----------------------------------cceeeeeecCCC
Confidence 999999999999887 33 377788765210 011234566676
Q ss_pred ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
.. |.+++| +|||++||+|+.|++|+|||+.+++++.++ .+|...|++++|+|||++||+|+.|++|+||++...
T Consensus 270 ~~--V~~~~~-Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 270 KG--ITSMDV-DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CC--eEeEEE-CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 64 899999 999999999999999999999999999875 789999999999999999999999999999998643
No 80
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-40 Score=299.58 Aligned_cols=295 Identities=13% Similarity=0.107 Sum_probs=239.2
Q ss_pred eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc------ceeeeeccccccceEEEEEcCC----C--CeE
Q 012712 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG------GVETKLLGKHQGRAHKLAIEPG----S--PHV 165 (458)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~v~~~~~~~~----~--~~~ 165 (458)
..+.+|.+.|++++|+| ++|++++.||.|++|++.+++ .... +..|...|.+++|+|+ + ..+
T Consensus 10 ~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceE--EecCCCcEEEEEEecccccCCccccE
Confidence 34478999999999986 699999999999999998877 3333 6789999999999998 4 047
Q ss_pred EEEecCCCeEEEEeCCCCCc-----cceeeecccCCCCcceeecceEEEEEC----CCCCcE-EEEecCCCeEEEEecCC
Q 012712 166 FYTCGEDGLVQHFDLRTGAA-----TELFTCRPIDDRRNYMTVVNLNAIAID----PRNANL-FAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~-l~~~~~dg~i~i~d~~~ 235 (458)
|++++.|+.|++||+.+++. ...+..+. .+.....|.+++|+ |+ +.+ |++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGASNDRL-LSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSC-----TTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccc-----cccCCCcEEEEEEeeccCCC-CceEEEEEeCCCcEEEEeCCc
Confidence 89999999999999998876 43333211 00003579999999 97 678 99999999999999988
Q ss_pred ------CccCCCccCCCCCCCcCCCccc-------cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCC
Q 012712 236 ------YKWDGSTDFGQPADYFCPPNLI-------GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSS 301 (458)
Q Consensus 236 ------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~ 301 (458)
.+.... .+.... ..|...|.+++|+|++ ++++++ ++.|++||+.+
T Consensus 158 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~---------- 216 (397)
T 1sq9_A 158 FADESNSLTLNW----------SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST---------- 216 (397)
T ss_dssp SSSHHHHTTTCC----------CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT----------
T ss_pred cccccccceeec----------cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC----------
Confidence 442210 111112 3467889999999999 888888 45899999986
Q ss_pred CccccccccccCCCCccccCCCCCCcccccCceeecC---c---cceeeeeEEEEecCCCcEEEEecCC---CeEEEEEe
Q 012712 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG---H---RNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKK 372 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~ 372 (458)
......+.. | .. .+.+++| +|++++|++++.| |.|++||+
T Consensus 217 ----------------------------~~~~~~~~~~~~h~~~~~--~i~~i~~-~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 217 ----------------------------LRPLYNFESQHSMINNSN--SIRSVKF-SPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp ----------------------------TEEEEEEECCC---CCCC--CEEEEEE-CSSTTEEEEEEEETTEEEEEEEET
T ss_pred ----------------------------CceeEEEeccccccccCC--ccceEEE-CCCCCEEEEEecCCCCceEEEEEC
Confidence 334555665 6 55 3899998 9999999999999 99999999
Q ss_pred cCCeEEEEeec-------------CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccc------cc-------
Q 012712 373 KGGELIRVIEA-------------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLP------TN------- 425 (458)
Q Consensus 373 ~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~------~~------- 425 (458)
.+++.+..+.+ |...|.+++|+|++++|++++.||.|++||+.+++.. .+. .|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV 345 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCB
T ss_pred CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcc
Confidence 99999999998 9999999999999999999999999999999988665 444 56
Q ss_pred --------cccEEEEEEecCC----------cEEEeeecCCceEEEEEe
Q 012712 426 --------IEQVCFSIYSADY----------WWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 426 --------~~~v~~~~~s~d~----------~~l~s~~~d~~i~~w~~~ 456 (458)
...|.+++|+|+| .+|++++.||.|++|+.-
T Consensus 346 ~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 346 DEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 7889999999999 799999999999999973
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.1e-41 Score=298.48 Aligned_cols=317 Identities=15% Similarity=0.145 Sum_probs=236.8
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
..+.|+|++++|++|+.|+.|++||+++++. +....+.+|.+.|.+++|+|++++|++++.
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 72 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGT 72 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------EEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcC
Confidence 4567899999999999999999999997651 233568899999999999999999999999
Q ss_pred CCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce--eeeeccccccceEEEEE
Q 012712 82 DRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~ 158 (458)
|+.|++||+.+++..... ...|...|.+++|+| ++++|++++.||.|++||+...... .......|...|.+++|
T Consensus 73 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 73 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 999999999888744332 257899999999999 9999999999999999999887642 22334678999999999
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCC------------------CCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRT------------------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
+|++ .+|++++.||.|++||++. ++....+. . +...+.+++|+|+ +.+|+
T Consensus 151 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~v~~~~~~~~-~~~l~ 218 (372)
T 1k8k_C 151 HPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------S--SCGWVHGVCFSAN-GSRVA 218 (372)
T ss_dssp CTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------C--CSSCEEEEEECSS-SSEEE
T ss_pred cCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC--------C--CCCeEEEEEECCC-CCEEE
Confidence 9998 6899999999999999753 33332222 1 4557999999998 68999
Q ss_pred EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC--CC--CCC
Q 012712 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM--GL--GPN 296 (458)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~--~~--~~~ 296 (458)
+++.|+.|++||+++.+.. .....|...+.+++|+|++++++++.++.+++|++.. +. ...
T Consensus 219 ~~~~d~~i~i~d~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAV---------------ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp EEETTTEEEEEEGGGTTEE---------------EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred EEeCCCEEEEEECCCCcee---------------EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEee
Confidence 9999999999999887532 2334567789999999999999999888999999987 31 111
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCcccccC-------ceeecCccceeeeeEEEEecCCC---cEEEEecCCCe
Q 012712 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA-------PQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGR 366 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~s~~~---~~l~~~~~dg~ 366 (458)
.+........... ..+......+ ..... .....+|... |.+++|++++| ++|++|+.||.
T Consensus 284 ~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~g~~~~~l~s~~~Dg~ 353 (372)
T 1k8k_C 284 RLDVPKQSSQRGL-------TARERFQNLD-KKASSEGSAAAGAGLDSLHKNS--VSQISVLSGGKAKCSQFCTTGMDGG 353 (372)
T ss_dssp CCCCC---------------CHHHHHHHCC-CCC---------CCCSSSSSSC--EEEEEEEESTTTSCSEEEEEETTSE
T ss_pred ccCccccchhhhc-------chhhhhhhcc-cccccccCccccccccccccCC--cceeEEecCCCcceeeEEEecCCCc
Confidence 1110000000000 0000000000 00011 1222477774 89999757888 99999999999
Q ss_pred EEEEEecCCe
Q 012712 367 IFIWKKKGGE 376 (458)
Q Consensus 367 i~iwd~~~~~ 376 (458)
|++|++.+++
T Consensus 354 i~~W~~~~~~ 363 (372)
T 1k8k_C 354 MSIWDVRSLE 363 (372)
T ss_dssp EEEEEHHHHH
T ss_pred eEEEEecChh
Confidence 9999997654
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=302.50 Aligned_cols=329 Identities=15% Similarity=0.236 Sum_probs=235.6
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc-----------eeeeeccCCC------------cceeEEEEccC
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHN------------DNVFQAKIMPF 115 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~------------~~i~~~~~~~~ 115 (458)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+ .+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~- 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP- 103 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC-
Confidence 368999999999999999999999999999998776 34444 6898 8899999999
Q ss_pred CCC--eEEEEEcCCCcEEEeeccccccee--------------------------------------eeeccccccceEE
Q 012712 116 TDD--RSIVTCAADGQVRHAQILERGGVE--------------------------------------TKLLGKHQGRAHK 155 (458)
Q Consensus 116 ~~~--~~l~s~~~dg~i~vw~~~~~~~~~--------------------------------------~~~~~~~~~~v~~ 155 (458)
++ ..|++++.|+.|++|++.++.... .....+|...|.+
T Consensus 104 -~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 104 -QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp -CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred -CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 77 799999999999999997644310 0114679999999
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (458)
++|+|++ .+|+++ .|+.|++||+++ ++....+...+ ....+ +...|.+++|+|+++.+|++|+.||.|++||++
T Consensus 183 ~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 183 ISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKP-ANMEE--LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCC-SSGGG--CCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeeccc-ccccc--cCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 9999998 678888 799999999984 33333221111 11112 455799999999844899999999999999999
Q ss_pred CCccCCCccCCCCCCCcCCCccccccc------------cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712 235 KYKWDGSTDFGQPADYFCPPNLIGDEQ------------VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~ 302 (458)
+.+.... .......+. ..|.+++|+|+|++|++++++.|++||+...
T Consensus 258 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~---------- 316 (447)
T 3dw8_B 258 ASALCDR-----------HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNME---------- 316 (447)
T ss_dssp TCSSSCT-----------TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCC----------
T ss_pred CCccccc-----------eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCC----------
Confidence 8763110 011222233 4899999999999999998888999999762
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCcccee-------------eeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-------------TVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
......+.+|.... .+..++| +|++++|++|+.||.|++
T Consensus 317 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 317 ---------------------------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW-NGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp ---------------------------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE-CTTSSEEEEECSTTEEEE
T ss_pred ---------------------------ccccceeeccccccccccccccccccccceEEEE-CCCCCEEEEeccCCEEEE
Confidence 12233344443210 1334888 999999999999999999
Q ss_pred EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCc
Q 012712 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCS 449 (458)
Q Consensus 370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~ 449 (458)
||+.+++.+ .+..|..+.......+.. .+..++... ..........+...|..++|+|++.+||+++.++
T Consensus 369 wd~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~- 438 (447)
T 3dw8_B 369 FDRNTKRDI-TLEASRENNKPRTVLKPR-KVCASGKRK-------KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN- 438 (447)
T ss_dssp EETTTCCEE-EEECCSTTCCTTCBCCCC-CEECSSCCC-------TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-
T ss_pred EEcCCCcce-eeeecccccccccccCCc-cccccCCcc-------cccccccccccCCceeEEEECCCCCEEEEEecce-
Confidence 999988776 566665544333333322 233332210 0111112234556789999999999999988876
Q ss_pred eEEEE
Q 012712 450 ILLFE 454 (458)
Q Consensus 450 i~~w~ 454 (458)
+++|.
T Consensus 439 ~~~~~ 443 (447)
T 3dw8_B 439 LYIFQ 443 (447)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 66664
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.7e-41 Score=296.53 Aligned_cols=298 Identities=13% Similarity=0.109 Sum_probs=232.1
Q ss_pred CcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcC---CCcEEEeecccccceeeeeccccccceEEEEEcCCC--CeE
Q 012712 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS--PHV 165 (458)
Q Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~ 165 (458)
..+.+..+..+|...|.+++|+| ++..+ ++++. ||.|++|++.+++..... ..+|...|.+++|+|++ ..+
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVP--CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECT--TSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-EEEESSCEEEEECTTCCTTTCC
T ss_pred hhHHhhhhccCCCCceEEEEEcC--CCceEEEecCccCCCcEEEEEeCCCCccccee-eecccCcEEEEEEcCCCCCCce
Confidence 33444555578999999999999 88555 56665 899999999887765433 33689999999999983 368
Q ss_pred EEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEE------ECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 166 FYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIA------IDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~------~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
|++++.||.|++||+++++ ....+.. +...|.++. |+|+ +.+|++++.||.|++||+++.+.
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKG----------HKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECC----------CSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSS
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEe----------cccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCC
Confidence 9999999999999999887 5554432 445788885 5676 68999999999999999988651
Q ss_pred -CCCccCCCCCCCcCCCccccccccceeEEE----eCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712 239 -DGSTDFGQPADYFCPPNLIGDEQVGITGLA----FSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (458)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
.... ..........+.+++ |+|+++++++++. +.|++||+.++
T Consensus 152 ~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------------- 200 (357)
T 3i2n_A 152 PVANM-----------EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-------------------- 200 (357)
T ss_dssp CSEEE-----------CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--------------------
T ss_pred cceec-----------cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--------------------
Confidence 1110 001111234788888 7899999999885 58999999863
Q ss_pred CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC---CCcEEEEecCCCeEEEEEecCCeEEEEee-----cC
Q 012712 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP---KCEYVVSGSDCGRIFIWKKKGGELIRVIE-----AD 384 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~ 384 (458)
.. .....|.. .+.+++| +| ++++|++++.||.|++||+.+++.+..+. +|
T Consensus 201 ------------------~~-~~~~~~~~--~v~~~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 258 (357)
T 3i2n_A 201 ------------------AL-RWETNIKN--GVCSLEF-DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH 258 (357)
T ss_dssp ------------------EE-EEEEECSS--CEEEEEE-SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred ------------------ce-eeecCCCC--ceEEEEc-CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence 11 22234444 3899998 99 99999999999999999998876655444 89
Q ss_pred CceeeEEEecCCCC-eEEEeecCCcEEEecCCccc--------------------ccccccccccEEEEEEecCCcEEE-
Q 012712 385 RHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD--------------------RATLPTNIEQVCFSIYSADYWWSK- 442 (458)
Q Consensus 385 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~--------------------~~~~~~~~~~v~~~~~s~d~~~l~- 442 (458)
...|.+++|+|+++ +|++++.||.|++|++..+. ...+..|...|.+++|+|+|++|+
T Consensus 259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 338 (357)
T 3i2n_A 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCV 338 (357)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEE
Confidence 99999999999999 89999999999999997542 234567888899999999999888
Q ss_pred eeecCCceEEEEEe
Q 012712 443 SQNFSCSILLFEWL 456 (458)
Q Consensus 443 s~~~d~~i~~w~~~ 456 (458)
+++.|+.|++|+.-
T Consensus 339 s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 339 CSSFDQTVRVLIVT 352 (357)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EecCCCcEEEEECC
Confidence 89999999999974
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-40 Score=295.84 Aligned_cols=286 Identities=16% Similarity=0.232 Sum_probs=231.7
Q ss_pred ecCCCce--EEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 58 DKHRGCV--NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 58 ~~h~~~v--~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
.+|...+ .+++|+ +..+++++.|+.|++||+.+++....+...|...|.+++|+| ++++|++++.||.|++||+
T Consensus 88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEEC
Confidence 3676654 445555 456888889999999999999987777556899999999999 9999999999999999999
Q ss_pred ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCC
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
.+++.... +..|...|.+++|++ .++++++.||.|++||++.. .....+.. +...|.+++|+|+
T Consensus 164 ~~~~~~~~--~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~ 228 (401)
T 4aez_A 164 ESQTKLRT--MAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQG----------HSSEVCGLAWRSD 228 (401)
T ss_dssp TTCCEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECTT
T ss_pred cCCeEEEE--ecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcC----------CCCCeeEEEEcCC
Confidence 88877655 778999999999954 57999999999999999854 33333332 4557999999997
Q ss_pred CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec---CCcEEEEEcc
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN---DEFIYLFTQD 290 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~---~~~i~i~~~~ 290 (458)
+.+|++++.|+.|++||+++.+. ......|...|.+++|+|++ .++++++ ++.|++||+.
T Consensus 229 -~~~l~s~~~d~~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 229 -GLQLASGGNDNVVQIWDARSSIP---------------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp -SSEEEEEETTSCEEEEETTCSSE---------------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred -CCEEEEEeCCCeEEEccCCCCCc---------------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 78999999999999999987642 22344577899999999976 4666654 6689999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE--ecCCCeEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRIF 368 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~--~~~dg~i~ 368 (458)
++ .....+..+ . .+.+++| +|+++++++ |+.||.|+
T Consensus 293 ~~--------------------------------------~~~~~~~~~-~--~v~~~~~-s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 293 TG--------------------------------------ARVNTVDAG-S--QVTSLIW-SPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp TC--------------------------------------CEEEEEECS-S--CEEEEEE-CSSSSEEEEEECTTTCEEE
T ss_pred CC--------------------------------------CEEEEEeCC-C--cEEEEEE-CCCCCeEEEEeecCCCcEE
Confidence 73 333444332 2 3899998 999999998 55899999
Q ss_pred EEEecCCeEEE--EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 369 IWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 369 iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+||+.+++... .+.+|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus 331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 99999976554 46789999999999999999999999999999999988665
No 85
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.6e-40 Score=289.70 Aligned_cols=289 Identities=10% Similarity=0.100 Sum_probs=236.3
Q ss_pred EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEE
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVR 131 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~ 131 (458)
...+|.+.|++++|+|++++|++++.|+.|++|++.+++ ....+ ..|...|.+++|+| +++ +|++++.||.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFID--NTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEE--SSSEEEEEEETTSCEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECC--CCCcEEEEEcCCCeEE
Confidence 346899999999999999999999999999999998877 23333 48999999999999 999 999999999999
Q ss_pred Eeec-ccccceeeeeccc--cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---------CCccceeeecccCCCCc
Q 012712 132 HAQI-LERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---------GAATELFTCRPIDDRRN 199 (458)
Q Consensus 132 vw~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~ 199 (458)
+|++ .+++. ..+.. |...|.+++|+| + .++++++.|+.|++||+++ ++....+.
T Consensus 83 ~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--------- 148 (342)
T 1yfq_A 83 KVDLIGSPSF---QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--------- 148 (342)
T ss_dssp EECSSSSSSE---EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---------
T ss_pred EEEeccCCce---EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---------
Confidence 9999 77654 33677 999999999999 6 6899999999999999987 55444433
Q ss_pred ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEE
Q 012712 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLV 277 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 277 (458)
+...+.+++|+|+ + +++++.++.|++||+++ .... .......+...+.+++|+| ++++++
T Consensus 149 --~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~-------------~~~~~~~~~~~i~~i~~~~~~~~~l~ 210 (342)
T 1yfq_A 149 --VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDN-------------GTIEESGLKYQIRDVALLPKEQEGYA 210 (342)
T ss_dssp --SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCC-------------CEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred --eCCceEEEEecCC-c--EEEEeCCCeEEEEECCcccccc-------------ceeeecCCCCceeEEEECCCCCCEEE
Confidence 3457999999986 3 89999999999999987 4321 1223344677899999999 999999
Q ss_pred Eec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc-------eeeeeEEE
Q 012712 278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVN 349 (458)
Q Consensus 278 ~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~ 349 (458)
+++ ++.+++|+++....... ......+..|.. ...|.+++
T Consensus 211 ~~~~dg~i~i~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (342)
T 1yfq_A 211 CSSIDGRVAVEFFDDQGDDYN--------------------------------SSKRFAFRCHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp EEETTSEEEEEECCTTCCSTT--------------------------------CTTCEEEECCCCCTTCCSSCCCEEEEE
T ss_pred EEecCCcEEEEEEcCCCcccc--------------------------------cccceeeecccccccccccceeEEEEE
Confidence 888 55899999876410000 123444555533 12489999
Q ss_pred EecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEeecCCc-EEEecC
Q 012712 350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESD-IKILTP 414 (458)
Q Consensus 350 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~-i~iw~~ 414 (458)
| +|++++|++++.||.|++||+.+++++..+.+| ...|.+++ |++++|++++.||. .+.|..
T Consensus 259 ~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 259 F-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp E-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred E-cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 8 999999999999999999999999999999998 99999999 99999999999998 666653
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=292.97 Aligned_cols=347 Identities=15% Similarity=0.113 Sum_probs=231.4
Q ss_pred CCCCCC-CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEec
Q 012712 3 DASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS 80 (458)
Q Consensus 3 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~ 80 (458)
.+.|+| ++++|++|+.||.|++||+.+++.......... .........+|.+.|.+++|+| ++++|++++
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV--------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------ccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 356788 999999999999999999998876643100000 0000011246999999999999 778999999
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCC-CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
.|+.|++||+.+++....+ .+...+.++.|+|.. ++.++++++.+|.|++||+.+++.... +..|...|.+++|+
T Consensus 120 ~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEILAVSWS 195 (408)
T ss_dssp TTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--ECCCCSCEEEEEEC
T ss_pred CCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--ecCCCCcEEEEEEC
Confidence 9999999999999887776 478889999999832 334899999999999999998876655 77899999999999
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCc-cceeeeccc-----CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPI-----DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
|+++.++++++.||.|++||++++.. ...+..... .......+...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence 99966899999999999999987752 222211000 00000125567999999997 789999999999999999
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccC
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (458)
++.+....... .................+.+.+++++.++.+++||+.+
T Consensus 275 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------------------- 323 (408)
T 4a11_B 275 SNGENTLVNYG---------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS---------------------- 323 (408)
T ss_dssp TTCCBCCCCCC---------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT----------------------
T ss_pred CCCccceeccc---------cccccccccceeEEecCCCceEEEEecCCEEEEEECcC----------------------
Confidence 98764322110 00011111222233344455667777788999999987
Q ss_pred CCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (458)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 393 (458)
......+.+|... |.+++| +|++++|++++.||.|++||+.+++++.....+... ..+
T Consensus 324 ----------------~~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~ 381 (408)
T 4a11_B 324 ----------------GEQITMLKGHYKT--VDCCVF-QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQL 381 (408)
T ss_dssp ----------------CCEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEEECC-------------------
T ss_pred ----------------CcceeeeccCCCe--EEEEEE-cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccc
Confidence 4556777888875 899998 999999999999999999999998887665543321 233
Q ss_pred cC-CCCeEEEeecCCcEEEecCC
Q 012712 394 HP-HSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 394 s~-~~~~l~s~~~d~~i~iw~~~ 415 (458)
.+ +...+.+.+.++.+++|+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 382 NPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------------
T ss_pred ccccceeecccCccCceeecCCc
Confidence 33 33455667789999999865
No 87
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=293.44 Aligned_cols=297 Identities=13% Similarity=0.134 Sum_probs=235.8
Q ss_pred EeeeeeEeecCCCceEEEEEecC---CCEEEEecCCCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTD---GDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
.++.+..+.+|.+.|++++|+|+ |++|++|+.|+.|++||+.+ +..+.....+|...|.+++|+| ++++|++++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~ 105 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD--DGSKVFTAS 105 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT--TSSEEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc--CCCEEEEEc
Confidence 34455678899999999999999 69999999999999999987 5555344578999999999999 999999999
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEE--cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
.||.|++||+.+++... +..|...|.+++| +|++ .+|++++.||.|++||+++++....+.. .
T Consensus 106 ~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~ 170 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQL-----------P 170 (368)
T ss_dssp TTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEEC-----------S
T ss_pred CCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEec-----------C
Confidence 99999999998876544 4569999999999 8888 7899999999999999999988777763 2
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE----EEEe
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL----LVSY 279 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~ 279 (458)
..+.++.+.+ ..+++++.++.+++|+++...... ..........+.++++.++... ++++
T Consensus 171 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 171 ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF-------------RRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE-------------EECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCceEEEecC---CeeEEEeCCCcEEEEEeccccchh-------------hhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 2466777765 377888889999999998754211 1111122334555555554432 6666
Q ss_pred c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce----------eeeeEE
Q 012712 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC----------VTVKGV 348 (458)
Q Consensus 280 ~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~ 348 (458)
+ ++.+++|++..... ......+.+|... ..|.++
T Consensus 235 ~~dg~i~i~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNP-----------------------------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp ETTSEEEEEESSCSCH-----------------------------------HHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred cCCCcEEEEecCCCCc-----------------------------------cccceeeeeeecccccccccccccceEEE
Confidence 6 66899999986311 1233444444431 138999
Q ss_pred EEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 349 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
+| +|++++|++++.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.|+..+.|++.
T Consensus 280 ~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 280 AF-HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EE-ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 98 9999999999999999999999999999999999999999999999999999999876666644
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-40 Score=288.95 Aligned_cols=273 Identities=17% Similarity=0.207 Sum_probs=201.8
Q ss_pred EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce--eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. +..+ .+|...|.+++|+|..++++|++++.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4679999999999999999999999999999999987653 3344 799999999999862238899999999999999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
|++++.......+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+........ ..+ +...+.+++|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~-----~~~--h~~~v~~~~~~ 159 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI-----NNA--HTIGCNAVSWA 159 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----TTS--SSSCBCCCEEC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----ecc--ccCCcceEEEc
Confidence 99877544444578899999999999982 26899999999999999987642211111 112 44568899999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
|+.. .+.+ .+...+ ...+++++|++++ ++.|++||+..
T Consensus 160 ~~~~--------~~~~--~~~~~~-------------------------------~~~~~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 160 PAVV--------PGSL--IDHPSG-------------------------------QKPNYIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp CCCC--------C--------CCS-------------------------------CCCCCCCBEECCBTTSBCCEEEECT
T ss_pred cccC--------Cccc--cccccc-------------------------------cCccccceEEEecCCCeEEEEEeCC
Confidence 9721 0000 000000 0112356788777 45799998754
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC----cEEEEecCCCeE
Q 012712 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRI 367 (458)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~----~~l~~~~~dg~i 367 (458)
... ......+.+|... |.+++| +|++ ++|++++.||+|
T Consensus 199 ~~~-----------------------------------~~~~~~l~~h~~~--V~~v~~-sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 199 DGQ-----------------------------------WKEEQKLEAHSDW--VRDVAW-APSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp TSC-----------------------------------EEEEECCBCCSSC--EEEEEC-CCCSSCSCCEEEEEETTCEE
T ss_pred CCc-----------------------------------cceeeecccCCCc--eEEEEe-cCCCCCCCceEEEEcCCCeE
Confidence 210 1234566778774 899998 9986 899999999999
Q ss_pred EEEEecCC---e-EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 368 FIWKKKGG---E-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 368 ~iwd~~~~---~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
++|++.+. + ....+..|...|.+++|+|++++||+++.|+.|++|+..
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999762 1 234456788999999999999999999999999999975
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-39 Score=293.23 Aligned_cols=282 Identities=18% Similarity=0.220 Sum_probs=226.8
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVI 86 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (458)
+++..+++++.|+.|++||+++++.... +. .|.+.|.+++|+|++++|++|+.||.|+
T Consensus 101 ~s~~~l~~~~~d~~v~lw~~~~~~~~~~---------------------~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 101 WSNLNVVAVALERNVYVWNADSGSVSAL---------------------AETDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp ECTTSEEEEEETTEEEEEETTTCCEEEE---------------------EECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ecCCCEEEEECCCeEEEeeCCCCcEeEe---------------------eecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 3456688888999999999998876532 33 3899999999999999999999999999
Q ss_pred EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (458)
+||+.+++.+..+ .+|...|.+++|. ++.|++++.||.|++||++...... ..+..|...|.+++|+|++ .+|
T Consensus 160 iwd~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l 232 (401)
T 4aez_A 160 IYDVESQTKLRTM-AGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDG-LQL 232 (401)
T ss_dssp EEETTTCCEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-SEE
T ss_pred EEECcCCeEEEEe-cCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCccee-eEEcCCCCCeeEEEEcCCC-CEE
Confidence 9999999888777 6899999999995 4699999999999999998544332 3377899999999999998 789
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccCCCccC
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDF 244 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 244 (458)
++++.|+.|++||+++++....+.. +...|.+++|+|++..++++++ .|+.|++||+++++....
T Consensus 233 ~s~~~d~~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~--- 299 (401)
T 4aez_A 233 ASGGNDNVVQIWDARSSIPKFTKTN----------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT--- 299 (401)
T ss_dssp EEEETTSCEEEEETTCSSEEEEECC----------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE---
T ss_pred EEEeCCCeEEEccCCCCCccEEecC----------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE---
Confidence 9999999999999999877665542 4457999999998777888866 799999999988753221
Q ss_pred CCCCCCcCCCccccccccceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
. .+...+.+++|+|+++++++++ ++.|++|++.++.
T Consensus 300 ------------~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~---------------------------- 338 (401)
T 4aez_A 300 ------------V-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG---------------------------- 338 (401)
T ss_dssp ------------E-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE----------------------------
T ss_pred ------------E-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc----------------------------
Confidence 1 2456899999999999998843 5689999987631
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 382 (458)
......+.+|... |.+++| +|++++|++++.||.|++|++.+++.+....
T Consensus 339 --------~~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 339 --------LTKQVDIPAHDTR--VLYSAL-SPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp --------EEEEEEEECCSSC--CCEEEE-CTTSSEEEEECTTSEEEEEECCC--------
T ss_pred --------ceeEEEecCCCCC--EEEEEE-CCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 1223345677764 899998 9999999999999999999999988776543
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=282.56 Aligned_cols=288 Identities=14% Similarity=0.155 Sum_probs=233.5
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (458)
..++......+.+|.+.|.+++| | ++++|++++.||.|++||+.++..... +..|...|.+++|+|++ .+++++
T Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~ 77 (313)
T 3odt_A 4 PFTGYQLSATLKGHDQDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTV--VYTGQGFLNSVCYDSEK-ELLLFG 77 (313)
T ss_dssp -CCCCEEEEEECCCSSCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEE--EEECSSCEEEEEEETTT-TEEEEE
T ss_pred ccccHHHHHHhhCCCCCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEE--eecCCccEEEEEECCCC-CEEEEe
Confidence 33443333444899999999999 8 999999999999999999977665544 67789999999999999 689999
Q ss_pred cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (458)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (458)
+.|+.|++|++............. + +...+.+++|+ +.++++++.||.|++||....
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~-----~--~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~~~------------- 134 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLI-----G--HQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSL------------- 134 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEEC-----C--CSSCEEEEEEE---TTEEEEEETTSEEEEEETTEE-------------
T ss_pred cCCCeEEEEEeeecCCCCcccchh-----h--cccCEEEEEec---CCEEEEEeCCCCEEEEcCCcE-------------
Confidence 999999999987754322221111 1 45578999994 469999999999999992211
Q ss_pred CcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712 250 YFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (458)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (458)
......|...+.+++|.| ++.++++++ ++.+++||..
T Consensus 135 ----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------------- 173 (313)
T 3odt_A 135 ----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND------------------------------------- 173 (313)
T ss_dssp ----EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------------------------------------
T ss_pred ----EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-------------------------------------
Confidence 233445788999999988 888888888 5589999943
Q ss_pred ccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC
Q 012712 328 DVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (458)
Q Consensus 328 ~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 406 (458)
.....+.. |.. .+.+++| +|+++ +++++.||.|++||+.+++++..+.+|...|.+++|+|++ .|++++.|
T Consensus 174 ---~~~~~~~~~~~~--~i~~~~~-~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 245 (313)
T 3odt_A 174 ---KVIKTFSGIHND--VVRHLAV-VDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED 245 (313)
T ss_dssp ---EEEEEECSSCSS--CEEEEEE-EETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETT
T ss_pred ---ceEEEEeccCcc--cEEEEEE-cCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecC
Confidence 23444554 554 3889998 99998 8899999999999999999999999999999999999999 68899999
Q ss_pred CcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 407 SDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 407 ~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
|.|++||+.+++.. .+..|...|.+++|+|+++ +++++.||.|++|+.-
T Consensus 246 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp SEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred CEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 99999999988765 5667777899999999999 5578999999999863
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-41 Score=300.96 Aligned_cols=322 Identities=10% Similarity=0.067 Sum_probs=234.4
Q ss_pred CCCCCC----CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe--ecCCCceEEEEEecC----C
Q 012712 4 ASNNNN----NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL--DKHRGCVNTVSFNTD----G 73 (458)
Q Consensus 4 ~~~~~~----~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~----~ 73 (458)
+.|+|+ ...+++++.++.|++||+.+++.+.. +..+ ..|.+.|.+++|+|+ +
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL------------------LQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE------------------EEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe------------------eeeccccCCCCcEEEEEeccCCCCCC
Confidence 456663 45566666688999999998776532 1112 237789999999999 6
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-eccccccc
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQGR 152 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~ 152 (458)
++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|. ++.+|++++.||.|++||+.+++..... .+..|...
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred CEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 79999999999999999999888777 689999999999983 5789999999999999999887765541 12679999
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
|.+++|+|++ .+|++++.||.|++||+++++....+.. .+.++|+ +..+..........
T Consensus 164 v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~~~--- 222 (366)
T 3k26_A 164 VLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKE----------------SYDYNPN-KTNRPFISQKIHFP--- 222 (366)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHH----------------HHTCCGG-GCSSCCCCEEECCC---
T ss_pred eeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccce----------------eEEecCC-CCcccccceeeccC---
Confidence 9999999998 6899999999999999998766544431 1223343 12221111100000
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
.......|...|.+++|+ +++|++++ ++.|++||+.+.........
T Consensus 223 --------------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------- 269 (366)
T 3k26_A 223 --------------------DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIK----------- 269 (366)
T ss_dssp --------------------SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCC-----------
T ss_pred --------------------ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccc-----------
Confidence 011122356677888887 55677666 45788888766432111000
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC--CcEEEEecCCCeEEEEEecCCe----EEEEeecC-
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--CEYVVSGSDCGRIFIWKKKGGE----LIRVIEAD- 384 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~- 384 (458)
...........+..|... +.+++| +|+ +++|++|+.||.|++||+.+++ ....+.+|
T Consensus 270 -------------~~~~~~~~~~~~~~~~~~--v~~~~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 270 -------------PSESNVTILGRFDYSQCD--IWYMRF-SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp -------------TTCCCEEEEEEEECSSCC--SSCCCC-EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred -------------cCCcchheeccccccCCc--EEEEEE-cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 000012234566667664 788888 899 9999999999999999998875 44577777
Q ss_pred -CceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 385 -RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 385 -~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
...|++++|+|++++|++++.||.|++||+.
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 6899999999999999999999999999975
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-40 Score=302.26 Aligned_cols=330 Identities=11% Similarity=0.154 Sum_probs=235.8
Q ss_pred CCCCCC-CCCeEEEeeCCCcEEEEEccc---cccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE
Q 012712 3 DASNNN-NNKRARTSVDKALVDVWLREL---GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (458)
Q Consensus 3 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (458)
.+.|+| ++++|++|+.||+|+|||+.+ +.... ....+ +|.+.|.+++|+|++++|++
T Consensus 68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~------------------~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS------------------SSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS------------------CSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCCEEEEecCCceEEEeECcccccCcccc------------------eeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 456788 999999999999999999986 43221 11222 59999999999999999999
Q ss_pred ecCCCeEEEEECC---Ccceeeeec---------cC--CCcceeEEE--EccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 79 GSDDRRVILWDWK---TERVKLSFH---------SG--HNDNVFQAK--IMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 79 ~~~d~~i~iwd~~---~~~~~~~~~---------~~--~~~~i~~~~--~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
++.|+.|++||++ +++...... .. +...+.++. ++| ++.+|++++.||.|++||+++++.+.
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE--EKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS--SCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 9999999999995 444332220 11 556677777 446 89999999999999999999888776
Q ss_pred eeeccc--cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCc
Q 012712 143 TKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NAN 217 (458)
Q Consensus 143 ~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~ 217 (458)
. +.. |...|++++|+|++ .+|++++.||.|++||+++++....+... +...|.+++|+|. ++.
T Consensus 207 ~--~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 207 I--IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFG---------DHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp E--EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCT---------TCEEEEEEEECTTTCTTEE
T ss_pred E--EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecC---------CCCceEEEEeccccCCCcc
Confidence 6 444 89999999999998 78999999999999999998776665421 3447999966652 367
Q ss_pred EEEEecCCCeEEEEecCCCccCCCccCCCC-C--CCcCCCc------ccc--ccccceeEEEeCCCCcEEEEec-CCcEE
Q 012712 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-A--DYFCPPN------LIG--DEQVGITGLAFSDQSELLVSYN-DEFIY 285 (458)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~--~~~~~~~------~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~ 285 (458)
+|++++.||.|++||+++++.......... . ..+.+.. ... .|...|.+++|+ ++++|++++ ++.|+
T Consensus 275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 999999999999999998764332221100 0 0000000 112 267889999999 778888888 66899
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~d 364 (458)
+||+.+ ......+.+|... ..+....+ +++..+++..
T Consensus 354 ~wd~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--- 391 (437)
T 3gre_A 354 MFSLNE--------------------------------------LSSSKAVISPSRFSDVFIPTQV-TANLTMLLRK--- 391 (437)
T ss_dssp EEETTC--------------------------------------GGGCEEEECC--CCCEEEEEEE-ETTEEEEEEE---
T ss_pred EEECCC--------------------------------------cccceEEecccccCceEEEEEe-ecceEEEEEe---
Confidence 999987 3445556655322 12444555 6666666554
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecCC--CCeEEEeecCCcEEEec
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPH--STVLASSGIESDIKILT 413 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iw~ 413 (458)
|+............|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -----~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -----MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -----cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 333344445566779999999999998 78999999999999995
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.4e-40 Score=286.91 Aligned_cols=272 Identities=15% Similarity=0.155 Sum_probs=206.8
Q ss_pred eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCe
Q 012712 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGL 174 (458)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~ 174 (458)
..++.+|.+.|++++|+| ++++|++++.|++|++||+.++.......+.+|...|.+++|+|+ + .+|++++.|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~ 82 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRK 82 (316)
T ss_dssp --------CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSC
T ss_pred eeecccccCeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCE
Confidence 344578999999999999 999999999999999999987654444458899999999999863 5 68999999999
Q ss_pred EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (458)
|++||+++++....... .+ +...|.+++|+|++ +.+|++|+.|+.|++||++..... ..
T Consensus 83 v~iWd~~~~~~~~~~~~------~~--h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~------------~~ 142 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEH------AG--HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW------------EV 142 (316)
T ss_dssp EEEECCSSSCCCEEEEE------CC--CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE------------EE
T ss_pred EEEEECCCCcceEEEEc------cC--CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc------------ce
Confidence 99999988753322221 11 44579999999973 579999999999999999865210 01
Q ss_pred CccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712 254 PNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (458)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
......|...+.+++|+|++.. +.+ .+
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~------~~~--~~--------------------------------------------- 169 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVP------GSL--ID--------------------------------------------- 169 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC----------------------------------------------------------
T ss_pred eeeeccccCCcceEEEccccCC------ccc--cc---------------------------------------------
Confidence 1234456778999999997420 000 00
Q ss_pred eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---eEEEEeecCCceeeEEEecCCC----CeEEEeecC
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIEADRHVVNCIEPHPHS----TVLASSGIE 406 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~d 406 (458)
+... . ..+++++|++|+.|++|++||+... +++..+.+|...|.+++|+|++ ++||+++.|
T Consensus 170 -----~~~~------~-~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 170 -----HPSG------Q-KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS------C-CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred -----cccc------c-CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence 0000 0 1345789999999999999999755 4677889999999999999987 789999999
Q ss_pred CcEEEecCCccc-----ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 407 SDIKILTPNAAD-----RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 407 ~~i~iw~~~~~~-----~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
++|++|++.+.. ...+..|...|.+++|+|+|.+||+++.|+.|+||+..
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999987631 22345677889999999999999999999999999964
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.1e-39 Score=290.98 Aligned_cols=297 Identities=20% Similarity=0.285 Sum_probs=230.1
Q ss_pred EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
...+|...|.++++ ++++|++|+.|+.|++||+.+++....+ .+|...|.+++| ++++|++|+.||.|++||+
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence 33467778998877 7899999999999999999999987777 789999999998 6789999999999999999
Q ss_pred ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
.+++.... +..|...|.+++|++ ..+++++.||.|++||+++++......... + +...|.+++| +
T Consensus 201 ~~~~~~~~--~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~--~~~~v~~~~~--~- 265 (435)
T 1p22_A 201 NTGEMLNT--LIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLV-----G--HRAAVNVVDF--D- 265 (435)
T ss_dssp SSCCEEEE--ECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEEC-----C--CSSCEEEEEE--E-
T ss_pred CCCcEEEE--EcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEec-----C--CCCcEEEEEe--C-
Confidence 98887655 778999999999975 478999999999999999887653222211 1 4557899999 3
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~ 294 (458)
++++++|+.||.|++||+++++.. .....|...|.++++ ++.++++++ ++.|++||+.+
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~---------------~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~--- 325 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFV---------------RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC--- 325 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT---
T ss_pred CCEEEEEeCCCeEEEEECCcCcEE---------------EEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC---
Confidence 579999999999999999887532 234457788999998 456888877 56899999987
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
......+.+|... +.+++| ++++|++|+.||.|++||+.+
T Consensus 326 -----------------------------------~~~~~~~~~h~~~--v~~~~~---~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 326 -----------------------------------GACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -----------------------------------CCEEEEECCCSSC--EEEEEC---CSSEEEEEETTSCEEEEEHHH
T ss_pred -----------------------------------CCEEEEEeCCcCc--EEEEEe---cCCEEEEEeCCCcEEEEECCC
Confidence 3456677788775 788876 788999999999999999987
Q ss_pred Ce---------EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEec
Q 012712 375 GE---------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSA 436 (458)
Q Consensus 375 ~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~ 436 (458)
++ ++..+.+|.+.|.+++| ++++|++++.||.|++||+.+...........+..++.|.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence 66 78899999999999999 78899999999999999998876655444445555665543
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-39 Score=288.09 Aligned_cols=340 Identities=12% Similarity=0.152 Sum_probs=235.8
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCC--CeEEEEEcCCCc
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQ 129 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~dg~ 129 (458)
+..+.+|.+.|++++|+|++++||+|+.|+.|++||+. +++.+..+ .+|...|++++|+| + +++|++++.||.
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAH--PKFGTILASCSYDGK 80 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSC
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCC--CCCCCEEEEeccCCE
Confidence 45688999999999999999999999999999999998 44555555 78999999999998 6 899999999999
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
|++||+.+++......+..|...|.+++|+|+ + .+|++++.|+.|++||++.+.......... +...|.
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~v~ 151 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVN 151 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEEC--------CTTCEE
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecC--------CCCceE
Confidence 99999998874444557789999999999999 7 789999999999999999885544333211 455799
Q ss_pred EEEECCC------------CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC---
Q 012712 208 AIAIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--- 272 (458)
Q Consensus 208 ~~~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 272 (458)
+++|+|. ++.++++++.||.|++||+++.+... ........|...|.+++|+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------VLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-----------EEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------eeEEEEecccCcEeEEEECCCCCC
Confidence 9999994 37899999999999999998754211 112344567889999999999
Q ss_pred CcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 273 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
+.+|++++ ++.|++||+..+..... ........|.. .+.+++|
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------------------~~~~~~~~~~~--~v~~~~~- 264 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQGPWK---------------------------------KTLLKEEKFPD--VLWRASW- 264 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCE---------------------------------EEESSSSCCSS--CEEEEEE-
T ss_pred CCeEEEEeCCCEEEEEeCCCCCccce---------------------------------eeeeccccCCC--cEEEEEE-
Confidence 89999988 55899999987421110 01111122444 4899998
Q ss_pred cCCCcEEEEecCCCeEEEEEecCCeEEEEee---c-----CCceeeEEEecCC--CC-eEEEeecCCcEEEecCCccccc
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---A-----DRHVVNCIEPHPH--ST-VLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~-----~~~~v~~~~~s~~--~~-~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+|++++|++++.||.|++|++........+. . +...+....|.+. .. .++....+..+.++... .
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~ 340 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLI----M 340 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEETTEEEEEEEEC----------------CEEEC--------------CTHHHH----H
T ss_pred cCCCCEEEEecCCCcEEEEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchhHHhh----h
Confidence 9999999999999999999998554333221 1 1122233333221 00 11111111122111110 0
Q ss_pred ccccccccEEEEEEecCCcEEEeeecCC-ceEEEEEe
Q 012712 421 TLPTNIEQVCFSIYSADYWWSKSQNFSC-SILLFEWL 456 (458)
Q Consensus 421 ~~~~~~~~v~~~~~s~d~~~l~s~~~d~-~i~~w~~~ 456 (458)
.............|+|||.+|+....+. .|..++..
T Consensus 341 ~~~~~~~~~~~~~fs~~g~~l~~~~~~~~~~~~~~~~ 377 (379)
T 3jrp_A 341 KERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLP 377 (379)
T ss_dssp HHTTCCTTCCCEEEETTTEEEEECTTSSSSEEEEECC
T ss_pred hhccccCcceeeEECCCCeEeeecccccccEEEEecc
Confidence 1111123455678999999987654443 37776654
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.7e-38 Score=285.70 Aligned_cols=280 Identities=15% Similarity=0.161 Sum_probs=230.5
Q ss_pred eeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712 107 VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (458)
Q Consensus 107 i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 186 (458)
++.|.|++ + +.|++|. |++|+|||+.+++......+.+|...|++++|+|++ .+|++|+.||.|++||+++++.+
T Consensus 108 ~~~l~wS~--~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 108 LNLVDWSS--G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp CBCEEECT--T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE
T ss_pred ceeEEECC--C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEE
Confidence 56799997 5 4677665 899999999999877766677888999999999999 78999999999999999999877
Q ss_pred ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (458)
..+.. +...+.+++++ +.++++|+.|+.+++||.+.... .......|...+..
T Consensus 183 ~~~~~----------h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~--------------~~~~~~~h~~~~~~ 235 (420)
T 4gga_A 183 RNMTS----------HSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH--------------HVATLSGHSQEVCG 235 (420)
T ss_dssp EEECC----------CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC--------------EEEEEECCSSCEEE
T ss_pred EEEeC----------CCCceEEEeeC---CCEEEEEeCCCceeEeeecccce--------------eeEEecccccceee
Confidence 66543 44467888775 46999999999999999886542 12345567889999
Q ss_pred EEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712 267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (458)
Q Consensus 267 ~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (458)
+.++|+++++++++ ++.+++|+..++... .........|... |
T Consensus 236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----------------------------------~~~~~~~~~~~~~--V 279 (420)
T 4gga_A 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------------------------------WVPLQTFTQHQGA--V 279 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCCSSC----------------------------------SCCSEEECCCSSC--E
T ss_pred eeecCCCCeeeeeeccccceEEeecccccc----------------------------------ceeeeeecccCCc--e
Confidence 99999999999988 558999998875321 1234555666664 8
Q ss_pred eEEEEecCCCc-EEEE--ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee--cCCcEEEecCCccccc
Q 012712 346 KGVNFFGPKCE-YVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPNAADRA 420 (458)
Q Consensus 346 ~~~~~~s~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~ 420 (458)
.+++| +|++. ++++ |+.|++|++||+.+++++..+..|. .+.++.|+|+++.|++++ .|+.|+|||+.++++.
T Consensus 280 ~~~~~-~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 280 KAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp EEEEE-CTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred eeeee-CCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 89998 88654 5544 5689999999999999999888664 688999999999888764 7999999999988765
Q ss_pred -ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 421 -TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 421 -~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.+.+|.+.|++++|+|||.+|+||+.|++|+|||..
T Consensus 358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 678899999999999999999999999999999964
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-38 Score=281.49 Aligned_cols=310 Identities=12% Similarity=0.122 Sum_probs=223.5
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc----eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
..+.+|.+.|++++|+|++++||+|+.|+.|++||+.++. ....+ .+|...|.+++|+|..++++|++++.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4578999999999999999999999999999999998764 33333 689999999999982238999999999999
Q ss_pred EEeecccccc-------eeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeeccc---CCCC
Q 012712 131 RHAQILERGG-------VETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI---DDRR 198 (458)
Q Consensus 131 ~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~ 198 (458)
++||+.++.. .....+..|...|.+++|+|+ + .++++++.||.|++||+++++....+..... ....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999987642 223347789999999999999 7 7899999999999999999887665543111 0111
Q ss_pred cceeecceEEEEECCC--CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC---
Q 012712 199 NYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--- 273 (458)
Q Consensus 199 ~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 273 (458)
...+...+.+++|+|+ ++.++++++.++.+.+|+....+.. .......|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-------------VAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-------------EEEECCCCCSCEEEEEECCCSSCS
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-------------eeeecCCCCcceeEEEECCCCCCc
Confidence 1124557899999996 3689999999999988877665421 122344578899999999998
Q ss_pred -cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 274 -ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 274 -~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
++|++++ ++.|++||+..+...... ..+.. .......
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------------------~~~~~--~~~~~~~- 268 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLAS--------------------------------------EESLT--NSNMFDN- 268 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC----------------------------------------------------------
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCcccc--------------------------------------CCccc--ceeccCC-
Confidence 7888888 558999999874322111 00000 0111222
Q ss_pred cCCCcEEEE----ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 352 GPKCEYVVS----GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 352 s~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
++....++. +.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 333333333 334456677777778888999999999999999999999999999999999999876543
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-40 Score=300.41 Aligned_cols=299 Identities=8% Similarity=0.051 Sum_probs=215.1
Q ss_pred CCCceEEEEEecCC---------CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 60 HRGCVNTVSFNTDG---------DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 60 h~~~v~~~~~s~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
+.+.|.+|+|+|++ ++||+|+.++.. -..+| +++.+++++.|++|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~--~~~~laS~s~D~tI 185 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNE--HLEMFDKEKHSSCI 185 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------Cccch--hhhhhccCCCCceE
Confidence 67899999999987 799998866420 01368 99999999999999
Q ss_pred EEeeccccccee--eeeccccccceEEEEEcCCC-----CeEEEEecCCCeEEEEeCCCCCccce--eee-cccCCCCcc
Q 012712 131 RHAQILERGGVE--TKLLGKHQGRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRTGAATEL--FTC-RPIDDRRNY 200 (458)
Q Consensus 131 ~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~-~~~~~~~~~ 200 (458)
+||++.+++... ...+..|.+.|.+++|+|++ ..+|++++.||+|++||+..+..... ... .+.....+
T Consensus 186 ~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~- 264 (524)
T 2j04_B 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL- 264 (524)
T ss_dssp EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-
T ss_pred EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-
Confidence 999998765432 12255678899999999971 26899999999999999987653210 000 00001112
Q ss_pred eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEE--EeCCCC-cEEE
Q 012712 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL--AFSDQS-ELLV 277 (458)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~ 277 (458)
+...|.+++|+|+ ..|++|+.||+|++||+++.+ .+......|...|.++ +|+|++ .+|+
T Consensus 265 -h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~--------------~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 265 -ADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPE--------------VPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp -TTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCS--------------SCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred -CCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCC--------------CceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 3457999999985 489999999999999998653 1223456688999999 678888 8999
Q ss_pred Eec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712 278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (458)
Q Consensus 278 ~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~ 356 (458)
+++ |++|++||+++ ......+.+|.....+.+++| +|+++
T Consensus 328 S~S~D~tvklWD~~~--------------------------------------~~~~~~~~~~~~~~~v~~v~f-sp~~~ 368 (524)
T 2j04_B 328 TVAVDGYFYIFNPKD--------------------------------------IATTKTTVSRFRGSNLVPVVY-CPQIY 368 (524)
T ss_dssp EEETTSEEEEECGGG--------------------------------------HHHHCEEEEECSCCSCCCEEE-ETTTT
T ss_pred EeccCCeEEEEECCC--------------------------------------CCcccccccccccCcccceEe-CCCcC
Confidence 988 55899999976 333445555543223778998 99999
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc-----ccccEEE
Q 012712 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-----NIEQVCF 431 (458)
Q Consensus 357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~v~~ 431 (458)
.+++++.|++|++||+.++.++.++.+|.+.|++++|+|++++|++|+.|++|++|++.......... +...+..
T Consensus 369 ~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~ 448 (524)
T 2j04_B 369 SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWK 448 (524)
T ss_dssp EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEE
T ss_pred eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEE
Confidence 99999999999999999999888899999999999999999999999999999999987653222211 1124789
Q ss_pred EEEecCCcEE
Q 012712 432 SIYSADYWWS 441 (458)
Q Consensus 432 ~~~s~d~~~l 441 (458)
++|+|+|..+
T Consensus 449 v~~sp~g~~~ 458 (524)
T 2j04_B 449 WDYSIKDDKY 458 (524)
T ss_dssp CBCCSSSCEE
T ss_pred eccCCCCCeE
Confidence 9999999855
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=280.79 Aligned_cols=293 Identities=13% Similarity=0.055 Sum_probs=225.0
Q ss_pred ECCCcceeeeeccCCCcceeEEEEccCCC---CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (458)
Q Consensus 89 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (458)
+....+.+..+ .+|.+.|++++|+| + +++|++++.||.|++||+.+........+.+|...|.+++|+|++ .+
T Consensus 25 ~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 100 (368)
T 3mmy_A 25 NHNPMKDIEVT-SSPDDSIGCLSFSP--PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SK 100 (368)
T ss_dssp SSCTTCCEECS-SCCSSCEEEEEECC--TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SE
T ss_pred CCCCcceeEec-cCCCCceEEEEEcC--CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CE
Confidence 34444444444 79999999999999 8 699999999999999999874444434578899999999999998 68
Q ss_pred EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE--CCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
|++++.||.|++||+++++...... +...|.+++| +|+ +.+|++++.||.|++||+++.+....
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~-- 166 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQIAQ-----------HDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMV-- 166 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEE--
T ss_pred EEEEcCCCcEEEEEcCCCCceeecc-----------ccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEE--
Confidence 9999999999999999887665433 5567999999 887 68999999999999999998763221
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (458)
... ...+.++.+.++ ..+++..++.+.+|++.....
T Consensus 167 -------------~~~-~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~----------------------------- 202 (368)
T 3mmy_A 167 -------------LQL-PERCYCADVIYP-MAVVATAERGLIVYQLENQPS----------------------------- 202 (368)
T ss_dssp -------------EEC-SSCEEEEEEETT-EEEEEEGGGCEEEEECSSSCE-----------------------------
T ss_pred -------------Eec-CCCceEEEecCC-eeEEEeCCCcEEEEEeccccc-----------------------------
Confidence 111 235666666654 344445577899999876321
Q ss_pred CCCcccccCceee-cCccceeeeeEEEEecCCCc----EEEEecCCCeEEEEEecCC---eEEEEeecCCc---------
Q 012712 324 TANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCE----YVVSGSDCGRIFIWKKKGG---ELIRVIEADRH--------- 386 (458)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~----~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~--------- 386 (458)
..... ..+... ...+.+ .++.. .+++++.||.|++|++... +.+..+.+|..
T Consensus 203 --------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (368)
T 3mmy_A 203 --------EFRRIESPLKHQ--HRCVAI-FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271 (368)
T ss_dssp --------EEEECCCSCSSC--EEEEEE-EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred --------hhhhccccccCC--CceEEE-cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence 01111 111121 333333 33333 3999999999999999887 56778888876
Q ss_pred ---eeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 387 ---VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 387 ---~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
.|++++|+|++++|++++.||.|++||+.++++. .+..|...|.+++|+|+|++|++++.|+..+.|+
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 6999999999999999999999999999988665 6677888999999999999999999987655544
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-40 Score=290.73 Aligned_cols=304 Identities=13% Similarity=0.092 Sum_probs=226.1
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
.-...|.+++|+|||+++||++.|++|+ |...++ .+ .+|...|.+++|+| +| .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-~gh~~~v~~V~FsP--dg-------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-NCNSKNLFHVKEFP--LE-------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-SSBGGGTEEEEEEC--CC-------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-cCCCccEEEEEECC--CC-------CcceEEEEeC---
Confidence 3457899999999999999999999999 644443 33 68999999999999 87 4555555554
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
+......+ .|...|.+++|+|+| .+|++++.||.|++||.+. ....+. +. .+.....+.+++|+|+ +++
T Consensus 75 ~~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~-----~~~~~~sv~svafSPD-G~~ 143 (588)
T 2j04_A 75 QQNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SK-----GNLSSRTYHCFEWNPI-ESS 143 (588)
T ss_dssp CSSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CS-----SCSTTTCEEEEEECSS-SSC
T ss_pred CCceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CC-----CccccccEEEEEEcCC-CCE
Confidence 32222112 458899999999999 7899999999999999544 222222 11 0001235899999998 799
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~ 298 (458)
|++|+.||+|++||+.+++.... .+ ...........+|...|.+++|+|+| +++++.++.+++|++..+..
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~-~~---i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~---- 214 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTP-EF---YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH---- 214 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCC-CC---EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS----
T ss_pred EEEEcCCCEEEEEECCCCccccc-cc---eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc----
Confidence 99999999999999988642110 00 00000011124577899999999999 66666677999999876421
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 377 (458)
......+ .+|.. .|.+++| + |++||+++ +++|++||+.+++.
T Consensus 215 -------------------------------~~~~~tL~~~h~~--~V~svaF-s--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 215 -------------------------------QPVSRMIQNASRR--KITDLKI-V--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp -------------------------------CCCEEEEECCCSS--CCCCEEE-E--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred -------------------------------ccceeeecccccC--cEEEEEE-E--CCEEEEEe-CCeEEEEECCCCeE
Confidence 0112345 35654 4899999 7 68999887 69999999988877
Q ss_pred EEEeecCCceeeEEEe--cCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 378 IRVIEADRHVVNCIEP--HPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 378 ~~~~~~~~~~v~~~~~--s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.....+|.+.+..++| +||+..|+++++||+ ++|... .++++||+..+++. |+++++|+.
T Consensus 258 ~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------~~~~spd~~l~a~~--d~~v~lW~~ 319 (588)
T 2j04_A 258 SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------ELHVTADNIIAPYL--EKKFKKWST 319 (588)
T ss_dssp EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------SEEEECCCSSHHHH--HHHHHHTTT
T ss_pred EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------cEEECCCceEEEEc--CCEEEEEEC
Confidence 5444489999999999 999999999999999 999977 26699999888774 888888864
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.2e-36 Score=272.83 Aligned_cols=330 Identities=11% Similarity=0.085 Sum_probs=249.6
Q ss_pred CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEE
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWD 89 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd 89 (458)
.++++++.|+.|++||+++++++. .+.+|. .+.+++|+|++++| ++++.|+.|++||
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d 60 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---------------------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIID 60 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---------------------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---------------------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEE
Confidence 468889999999999999887663 356564 48999999999976 6777899999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (458)
+.+++.+..+ .. ...+.+++|+| ++++|+ +++.++.|++||+.+++.... +. +...+.+++|+|++..++++
T Consensus 61 ~~~~~~~~~~-~~-~~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~--~~-~~~~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 61 TATNNVIATV-PA-GSSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGT--VK-TGKSPLGLALSPDGKKLYVT 133 (391)
T ss_dssp TTTTEEEEEE-EC-SSSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEE--EE-CSSSEEEEEECTTSSEEEEE
T ss_pred CCCCeEEEEE-EC-CCCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEE--Ee-CCCCcceEEECCCCCEEEEE
Confidence 9999887776 33 34899999999 998875 455679999999988776554 33 34568999999999656688
Q ss_pred ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
++.++.|++||+++++....+.. ...+.+++|+|++..++++++.++.|++||+++.+....
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------- 195 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSV-----------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------- 195 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEEC-----------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------
T ss_pred eCCCCEEEEEECCCCcEEEEEec-----------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-------
Confidence 89999999999999887666542 234689999998544447888999999999988753211
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEec----CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
. .+...+.+++|+|++++|++++ ++.|++||+.++
T Consensus 196 --------~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-------------------------------- 234 (391)
T 1l0q_A 196 --------V-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-------------------------------- 234 (391)
T ss_dssp --------E-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--------------------------------
T ss_pred --------E-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC--------------------------------
Confidence 1 1345788999999999888775 457999998763
Q ss_pred CCcccccCceeecCccceeeeeEEEEecCCCcEE-EEecCCCeEEEEEecCCeEEEEeecCCceee---EEEecCCC---
Q 012712 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEADRHVVN---CIEPHPHS--- 397 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~---~~~~s~~~--- 397 (458)
.....+..+.. +.+++| +|++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 235 ------~~~~~~~~~~~---~~~~~~-s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T 1l0q_A 235 ------KITARIPVGPD---PAGIAV-TPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY 304 (391)
T ss_dssp ------EEEEEEECCSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred ------eEEEEEecCCC---ccEEEE-ccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence 33445555543 678888 9999987 5778899999999999999998887765431 12222211
Q ss_pred -------------------CeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEe
Q 012712 398 -------------------TVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 398 -------------------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 443 (458)
..+...+.|...++|+...+..... .. ....|+|+|.|.++
T Consensus 305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~---~~--~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKK---QN--PTHTYSETGIYTVR 364 (391)
T ss_dssp CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECS---SS--CEECCSSCEEEEEE
T ss_pred cccccccccccccccccceEEEEeCCCCceEEEEECCCCcccCc---CC--CeEEeCCCceEEEE
Confidence 2355667788999999987754321 11 23679999977665
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=267.36 Aligned_cols=280 Identities=14% Similarity=0.150 Sum_probs=224.7
Q ss_pred eeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712 107 VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (458)
Q Consensus 107 i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 186 (458)
.+.|+||+ ++ +|++| .|++|++||+.+++......+.+|...|++++|+|++ ++|++|+.||.|++||+++++.+
T Consensus 28 ~~~l~WS~--~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSS--GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECT--TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECC--CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeE
Confidence 46799998 65 66665 5899999999999887776677889999999999999 68999999999999999999887
Q ss_pred ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (458)
..+.. +...+.++.+. +..+++++.++.+++|+...... .......|...+..
T Consensus 103 ~~~~~----------h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 103 RNMTS----------HSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH--------------HVATLSGHSQEVCG 155 (318)
T ss_dssp EEEEC----------CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC--------------EEEEEECCSSCEEE
T ss_pred EEecC----------ccceEEEeecC---CCEEEEEecCCceEeeecCCCce--------------eEEEEcCccCceEE
Confidence 76653 33345555554 46999999999999999877542 23345567889999
Q ss_pred EEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712 267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (458)
Q Consensus 267 ~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (458)
+.+.+++++|++++ ++.|++||+.+++... ........+... +
T Consensus 156 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------------------------~~~~~~~~~~~~--v 199 (318)
T 4ggc_A 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGW----------------------------------VPLQTFTQHQGA--V 199 (318)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCBTTBS----------------------------------CCSEEECCCCSC--E
T ss_pred EEEcCCCCEEEEEecCcceeEEECCCCcccc----------------------------------cceeeecccCCc--e
Confidence 99999999999988 4589999998743211 123334444443 7
Q ss_pred eEEEEecCCCcE---EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee--cCCcEEEecCCccccc
Q 012712 346 KGVNFFGPKCEY---VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPNAADRA 420 (458)
Q Consensus 346 ~~~~~~s~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~ 420 (458)
.++++ +|++.. +++++.++.|++||........... +...+..+.|+|+++.+++++ .|+.|++||+.++++.
T Consensus 200 ~~~~~-~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEE-CTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEe-cCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence 78887 776653 3467889999999998887766654 667799999999999887654 7999999999988765
Q ss_pred -ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 421 -TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 421 -~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.+.+|.+.|++++|+|||++|+|++.||+|+|||..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 678899999999999999999999999999999964
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-38 Score=284.63 Aligned_cols=285 Identities=12% Similarity=0.087 Sum_probs=220.5
Q ss_pred CCCCC-eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEecCCCe
Q 012712 7 NNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRR 84 (458)
Q Consensus 7 ~~~~~-~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~ 84 (458)
+|+.. ++++++.||.|+||++....... .....+.+|.+.|++++|+| ++++|++|+.|+.
T Consensus 43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 43 NPKFMALICEASGGGAFLVLPLGKTGRVD-----------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp CSSEEEEEBCCSSSCCEEEEETTCCEECC-----------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCCeEEEEEEEcCCCEEEEEECccCCCCC-----------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence 44433 34457889999999996432211 12345789999999999999 9999999999999
Q ss_pred EEEEECCCc-------ceeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeeccccccceEEE
Q 012712 85 VILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (458)
Q Consensus 85 i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~ 156 (458)
|++||+.++ +.+..+ .+|...|.+++|+| ++ .+|++++.||.|++||+.+++.........|...|.++
T Consensus 106 v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 106 VMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp EEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred EEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence 999999987 444555 78999999999999 87 69999999999999999988766552117899999999
Q ss_pred EEcCCCCeEEEEecCCCeEEEEeCCCCCccceee-ecccCCCCcceeecceEEEEECCCCCcEEEEe---cCCCeEEEEe
Q 012712 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT-CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA---GSDEYTRLYD 232 (458)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~i~i~d 232 (458)
+|+|++ .+|++++.|+.|++||+++++....+. .+ ....+.+++|+|+ +.++++| +.|+.|++||
T Consensus 183 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 183 DWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPH---------EGTRPVHAVFVSE-GKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp EECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSS---------CSSSCCEEEECST-TEEEEEEECTTCCEEEEEEE
T ss_pred EECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCC---------CCCcceEEEEcCC-CcEEEEeccCCCCceEEEEc
Confidence 999998 688999999999999999987766552 21 1123788999997 6888888 7899999999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
+++.+. .+....
T Consensus 252 ~~~~~~------------------------~~~~~~-------------------------------------------- 263 (402)
T 2aq5_A 252 TKHLEE------------------------PLSLQE-------------------------------------------- 263 (402)
T ss_dssp TTBCSS------------------------CSEEEE--------------------------------------------
T ss_pred CccccC------------------------CceEEe--------------------------------------------
Confidence 876531 000000
Q ss_pred CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCeE-EEEeec--CCcee
Q 012712 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGEL-IRVIEA--DRHVV 388 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v 388 (458)
+ .+.. .+.+++| +|++++|+ +|+.||.|++||+.++++ +..+.. |...|
T Consensus 264 -----------------------~-~~~~--~v~~~~~-s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v 316 (402)
T 2aq5_A 264 -----------------------L-DTSS--GVLLPFF-DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ 316 (402)
T ss_dssp -----------------------C-CCCS--SCEEEEE-ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCC
T ss_pred -----------------------c-cCCC--ceeEEEE-cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcc
Confidence 0 1111 2677888 99999986 566799999999998874 455544 45899
Q ss_pred eEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 389 NCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 389 ~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
.+++|+|++.++++ .++.+++|++.++..
T Consensus 317 ~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 317 RGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99999999998875 466999999987643
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=283.27 Aligned_cols=330 Identities=9% Similarity=0.138 Sum_probs=222.1
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC------------CceEEEEEe
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR------------GCVNTVSFN 70 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~s 70 (458)
.+.|+|++.+||+|+.||.|+|||+.+++.... .....+++...+.+|. +.|++++|+
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQS----------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----C----------CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------ccccceeEecccccccccccccccccccCceEEEEEc
Confidence 456899999999999999999999997763211 0112345567788998 889999999
Q ss_pred cCC--CEEEEecCCCeEEEEECCCccee---------------------------------------eeeccCCCcceeE
Q 012712 71 TDG--DILISGSDDRRVILWDWKTERVK---------------------------------------LSFHSGHNDNVFQ 109 (458)
Q Consensus 71 ~~~--~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~i~~ 109 (458)
|++ .+|++++.|+.|++||+.++... ..+..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 79999999999999998764431 1234689999999
Q ss_pred EEEccCCCCeEEEEEcCCCcEEEeecccccceeee------eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712 110 AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK------LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (458)
Q Consensus 110 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (458)
++|+| ++++|+++ .|+.|++||+......... .+.+|...|.+++|+|+++.+|++++.||.|++||++++
T Consensus 183 ~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 183 ISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 99999 99999998 7999999999854332221 366899999999999998678999999999999999988
Q ss_pred Cc----cceeeecccCCC--CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCcc
Q 012712 184 AA----TELFTCRPIDDR--RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNL 256 (458)
Q Consensus 184 ~~----~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~ 256 (458)
+. ...+..+..... ....+...|.+++|+|+ +.+|++++. +.|++||+++ .+....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~--------------- 322 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVET--------------- 322 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCC---------------
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccce---------------
Confidence 75 344432110000 00001127999999997 789999988 9999999987 443222
Q ss_pred cccccc---------------ceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 257 IGDEQV---------------GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 257 ~~~~~~---------------~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
...|.. .+..++|+|++++|++++ ++.|++||+.++..... ..+....... ... ....+.
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~--~~~-~~~~~~ 398 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPR--TVL-KPRKVC 398 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTT--CBC-CCCCEE
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccc--ccc-CCcccc
Confidence 111211 134599999999999988 55899999988643210 0000000000 000 000000
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
..... ...............|..++| +|++++||+++.++ +++|..
T Consensus 399 ~~~~~----~~~~~~~~~~~~~~~i~~~~~-~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 399 ASGKR----KKDEISVDSLDFNKKILHTAW-HPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CSSCC----CTTCEEGGGCCTTSCCCEEEE-CSSSSEEEEECSSC-EEEEEC
T ss_pred ccCCc----ccccccccccccCCceeEEEE-CCCCCEEEEEecce-eeeecc
Confidence 00000 000000111111124889999 99999999998775 788864
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.5e-37 Score=270.05 Aligned_cols=279 Identities=14% Similarity=0.083 Sum_probs=225.3
Q ss_pred eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEcCCCCe-EEEEecCCCeEE
Q 012712 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPH-VFYTCGEDGLVQ 176 (458)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~ 176 (458)
+..+|.+.|++++|+| ++++|++++.||.|++|++.++.. .....+..|...|.+++|+|++ . +|++++.||.|+
T Consensus 6 ~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEIL 82 (342)
T ss_dssp CSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEE
T ss_pred cccCCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEE
Confidence 3468999999999999 999999999999999999987761 1112355799999999999998 7 899999999999
Q ss_pred EEeC-CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC---------CccCCCccCCC
Q 012712 177 HFDL-RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK---------YKWDGSTDFGQ 246 (458)
Q Consensus 177 iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~ 246 (458)
+||+ ++++. ..+... .+...|.+++|+| +.++++++.|+.|++||+++ .+..
T Consensus 83 ~wd~~~~~~~-~~~~~~--------~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------- 144 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNN--------EANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS------- 144 (342)
T ss_dssp EECSSSSSSE-EECBSC--------CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-------
T ss_pred EEEeccCCce-Eecccc--------CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee-------
Confidence 9999 77754 222110 0334799999999 57999999999999999986 4321
Q ss_pred CCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC-CCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (458)
.... +...+.+++|+|++ +++.+.++.|++||+.+ ...
T Consensus 145 --------~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~------------------------------- 183 (342)
T 1yfq_A 145 --------NNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD------------------------------- 183 (342)
T ss_dssp --------SSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC-------------------------------
T ss_pred --------eEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc-------------------------------
Confidence 1122 56789999999998 44444466899999876 321
Q ss_pred CcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCC------eEEEEeecCCc---------eee
Q 012712 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG------ELIRVIEADRH---------VVN 389 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~---------~v~ 389 (458)
........|.. .+.+++| +| +++++++++.||.|++|++... +....+..|.. .|.
T Consensus 184 -----~~~~~~~~~~~--~i~~i~~-~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 184 -----NGTIEESGLKY--QIRDVAL-LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp -----CCEEEECSCSS--CEEEEEE-CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred -----cceeeecCCCC--ceeEEEE-CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence 11122333444 3889998 99 9999999999999999999877 77888888865 899
Q ss_pred EEEecCCCCeEEEeecCCcEEEecCCccccc-ccccc-cccEEEEEEecCCcEEEeeecCCc
Q 012712 390 CIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTN-IEQVCFSIYSADYWWSKSQNFSCS 449 (458)
Q Consensus 390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~-~~~v~~~~~s~d~~~l~s~~~d~~ 449 (458)
+++|+|++++|++++.||.|++||+.+++.. .+..| ...|.+++ |++.+|++++.||.
T Consensus 256 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred EEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 9999999999999999999999999988765 56677 88899999 99999999999998
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-37 Score=273.47 Aligned_cols=263 Identities=16% Similarity=0.182 Sum_probs=208.7
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHF 178 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iw 178 (458)
.+|...|++++|+| ++++|++++.||.|++|++..........+.+|...|.+++|+|+ + .+|++++.||.|++|
T Consensus 8 ~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 8 NAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIW 84 (379)
T ss_dssp EECCCCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEE
T ss_pred cCCcccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEE
Confidence 78999999999999 999999999999999999985444444458889999999999977 6 789999999999999
Q ss_pred eCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
|+++++........ . +...|.+++|+|++ +.++++++.|+.|++||++...... ....
T Consensus 85 d~~~~~~~~~~~~~------~--~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-------------~~~~ 143 (379)
T 3jrp_A 85 KEENGRWSQIAVHA------V--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-------------PIII 143 (379)
T ss_dssp EEETTEEEEEEEEC------C--CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-------------EEEE
T ss_pred EcCCCceeEeeeec------C--CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-------------eEEe
Confidence 99988632222211 1 44579999999973 5799999999999999998764211 1223
Q ss_pred cccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
..|...|.+++|+|......
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~------------------------------------------------------------ 163 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEED------------------------------------------------------------ 163 (379)
T ss_dssp ECCTTCEEEEEECCCC----------------------------------------------------------------
T ss_pred cCCCCceEEEEEcCcccccc------------------------------------------------------------
Confidence 34566777777777531100
Q ss_pred CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe----EEEEeecCCceeeEEEecCC---CCeEEEeecCCcEE
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE----LIRVIEADRHVVNCIEPHPH---STVLASSGIESDIK 410 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~i~ 410 (458)
.... ..+++++|++++.||.|++||+.+++ .+..+.+|...|.+++|+|+ +++|++++.||.|+
T Consensus 164 --------~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 164 --------GEHN-GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp ---------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred --------cccc-CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 0001 15689999999999999999998764 55678889999999999999 89999999999999
Q ss_pred EecCCccc------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 411 ILTPNAAD------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 411 iw~~~~~~------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+|++..+. ......|...|.+++|+|+|++|++++.||.|++|++-
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99998763 22334477889999999999999999999999999974
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.4e-37 Score=279.18 Aligned_cols=273 Identities=20% Similarity=0.281 Sum_probs=229.2
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.+|...|.++.| ++++|++|+.||.|++||+.+++.... +.+|...|.+++| ++ .++++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE--EcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEEC
Confidence 356677888776 788999999999999999988877655 7889999999999 45 68999999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
++++....+.. +...|.+++|++ .++++|+.||.|++||+++.+... ......+|
T Consensus 201 ~~~~~~~~~~~----------h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~------------~~~~~~~~ 255 (435)
T 1p22_A 201 NTGEMLNTLIH----------HCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDIT------------LRRVLVGH 255 (435)
T ss_dssp SSCCEEEEECC----------CCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCE------------EEEEECCC
T ss_pred CCCcEEEEEcC----------CCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCce------------eeeEecCC
Confidence 99987766643 455799999975 489999999999999998765211 11345567
Q ss_pred ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...|.+++| +++++++++ ++.|++||+.+ ......+.+|
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~--------------------------------------~~~~~~~~~~ 295 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTST--------------------------------------CEFVRTLNGH 295 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTT--------------------------------------CCEEEEEECC
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCc--------------------------------------CcEEEEEcCC
Confidence 889999999 777888887 55899999987 3456677777
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc-
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD- 418 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~- 418 (458)
... +.++.+ +++++++|+.||.|++||+.+++++..+.+|...|.+++| ++++|++|+.||.|++||+.+++
T Consensus 296 ~~~--v~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~ 368 (435)
T 1p22_A 296 KRG--IACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALD 368 (435)
T ss_dssp SSC--EEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred CCc--EEEEEe---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCC
Confidence 775 778877 4689999999999999999999999999999999999999 78999999999999999997664
Q ss_pred ---------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 419 ---------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 419 ---------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
...+..|.+.|.+++| ++.+|++++.||.|++||+.
T Consensus 369 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 369 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred ccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 3356788889999999 88999999999999999974
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.9e-36 Score=262.37 Aligned_cols=301 Identities=14% Similarity=0.093 Sum_probs=211.1
Q ss_pred EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (458)
||++.+...+... ..|...|++++|+| |+++|++|+.++ +++|++.+.+..... +...+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHIMSQ----EMRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -----------------CCCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEEEEE----ECSCCCEEEECTTSSEEE
T ss_pred cccccccCCcccc-ccCCCceEEEEECC--CCCEEEEEcCCE-EEEEecCCcceeeee----ecCCeEEEEEcCCCCEEE
Confidence 4566666665544 68999999999999 999999998775 789998776554332 223577888888885555
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC-ccCCCccCC
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFG 245 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~ 245 (458)
++++.|+.|++||+++++.+..+. ....|.+++++++ .++++ .++.|++||+.+. +....
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-----------~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~---- 135 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-----------VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITD---- 135 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSC----
T ss_pred EEECCccEEEEEECCCCcEEEEEE-----------CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEE----
Confidence 788889999999999998877665 3347999999985 33333 4789999999876 32211
Q ss_pred CCCCCcCCCccccccccceeEEEeCCCCcEEEEe--c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (458)
+.. +...+++++ .+++.+ + ++.|++||+.++..........
T Consensus 136 ----------~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~-------------------- 179 (355)
T 3vu4_A 136 ----------DIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV-------------------- 179 (355)
T ss_dssp ----------CEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------
T ss_pred ----------ecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc--------------------
Confidence 111 334556666 566653 4 5689999998753211100000
Q ss_pred CCCCcccccC-ceeecCccceeeeeEEEEecCCCcEEEEecCCCe-EEEEEecCCeEEEEee-c-CCceeeEEEecCCCC
Q 012712 323 STANTDVRIA-PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIE-A-DRHVVNCIEPHPHST 398 (458)
Q Consensus 323 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~ 398 (458)
......+ ...+.+|... |.+++| +|+|++|++|+.|++ |++||+.+++++.++. + |...|.+++|+|+++
T Consensus 180 ---~~~~~~p~~~~~~~h~~~--v~~~~~-s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~ 253 (355)
T 3vu4_A 180 ---QQKAILGKGVLIKAHTNP--IKMVRL-NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253 (355)
T ss_dssp ----------CCEEECCCSSC--EEEEEE-CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC
T ss_pred ---cccccCcccEEEEccCCc--eEEEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC
Confidence 0000112 6778889885 999999 999999999999998 9999999999999998 5 999999999999999
Q ss_pred eEEEeecCCcEEEecCCcccccc---cc---------------------cccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 399 VLASSGIESDIKILTPNAADRAT---LP---------------------TNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 399 ~l~s~~~d~~i~iw~~~~~~~~~---~~---------------------~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+|++++.|++|++|++..+.... +. ........++|+|||++|++++.||.+.+|+
T Consensus 254 ~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 254 KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999997653211 00 0112236789999999999999999999998
Q ss_pred Ee
Q 012712 455 WL 456 (458)
Q Consensus 455 ~~ 456 (458)
+.
T Consensus 334 ~~ 335 (355)
T 3vu4_A 334 VV 335 (355)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.7e-36 Score=270.80 Aligned_cols=270 Identities=11% Similarity=0.028 Sum_probs=175.7
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---eeccccccceEEEEEcC--------CCCeEEEEec
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---KLLGKHQGRAHKLAIEP--------GSPHVFYTCG 170 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~---~~~~~~~~~v~~~~~~~--------~~~~~l~s~~ 170 (458)
.|........+.+ ++.+|++++.|++|++||+..++.... ..+.+|.+.|++++|+| ++ ++|++++
T Consensus 87 ~~~~~~~~~~~~~--~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s 163 (393)
T 4gq1_A 87 LHDGDGNVNSSPV--YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVG 163 (393)
T ss_dssp ----------CCE--EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEE
T ss_pred ccCCCcceeecCC--CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEE
Confidence 3444555566777 889999999999999999988765332 23678999999999998 56 7999999
Q ss_pred CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC
Q 012712 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (458)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (458)
.|++|++||++++.....+.. +...+.+++|+|+++++|++++.|+.|++||+++++......
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~----------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~------- 226 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYP----------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS------- 226 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEE----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------------
T ss_pred CCCeEEEEECCCCceeeeecC----------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc-------
Confidence 999999999988766544432 445789999999866789999999999999998875321100
Q ss_pred cCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccc
Q 012712 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (458)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (458)
.....+...+......+.
T Consensus 227 ----~~~~~~~~~~~s~~~~~~---------------------------------------------------------- 244 (393)
T 4gq1_A 227 ----QTELVKNPWLLTLNTLPL---------------------------------------------------------- 244 (393)
T ss_dssp --------CSCCCSEEEESGGG----------------------------------------------------------
T ss_pred ----ccCCcccceEEecccccc----------------------------------------------------------
Confidence 000000011111111110
Q ss_pred cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC---------------
Q 012712 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP--------------- 395 (458)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--------------- 395 (458)
.......+|... +.++.|+.|+++.|++++.|+++++||+.+++....+..|...+..+.+.|
T Consensus 245 ~~~~~~~~~~~~--v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 245 VNTCHSSGIASS--LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp C------CCSSS--CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred eeeeeccccccc--ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 011122344443 778888679999999999999999999988877777766655554444433
Q ss_pred -----CCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 396 -----HSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 396 -----~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
++.++++|+.||.|++||+.+++.. ....|...|.+++|||||++||+++.|| +.+|+.+
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3346778889999999999988665 5677888999999999999999998776 6666653
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.7e-36 Score=265.64 Aligned_cols=309 Identities=15% Similarity=0.118 Sum_probs=210.7
Q ss_pred eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcC--CCCeEEEEecCC
Q 012712 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEP--GSPHVFYTCGED 172 (458)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~d 172 (458)
..++.+|.+.|++++|+| ++++|++++.||.|++|++.++.. .....+.+|...|.+++|+| ++ .+|++++.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~d 80 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYD 80 (351)
T ss_dssp CCEECCCSSCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETT
T ss_pred cccCcccccceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCC
Confidence 344579999999999999 999999999999999999987643 22334678999999999999 46 789999999
Q ss_pred CeEEEEeCCCCCccc------eeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712 173 GLVQHFDLRTGAATE------LFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (458)
Q Consensus 173 g~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (458)
|.|++||+++++... ..... .. +...|.+++|+|+. +.++++++.||.|++||+++.+........
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTL-----ND--SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEE-----CC--CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred CeEEEEecCCCcccccccCcceeeee-----cc--cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 999999998875321 11110 11 45579999999962 579999999999999999987754432211
Q ss_pred CCCCCcCCCccccccccceeEEEeCCC---CcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 246 QPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
.... ........+...+.+++|+|+ +.++++++.+ .+.+|+...+.
T Consensus 154 ~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------- 203 (351)
T 3f3f_A 154 SEMK--VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---------------------------- 203 (351)
T ss_dssp EEEE--SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----------------------------
T ss_pred cccc--ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----------------------------
Confidence 1100 011122346778999999997 8888888866 56555544321
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCC----cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 397 (458)
......+.+|... |.+++| +|++ ++|++++.||.|++||+.++........+...+.....++..
T Consensus 204 --------~~~~~~~~~h~~~--i~~~~~-~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
T 3f3f_A 204 --------LHVAAKLPGHKSL--IRSISW-APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272 (351)
T ss_dssp --------EEEEEECCCCCSC--EEEEEE-CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred --------eeeeeecCCCCcc--eeEEEE-CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence 1235566677774 899998 9998 899999999999999998876555544444445555555555
Q ss_pred CeEEEee----cCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 398 TVLASSG----IESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 398 ~~l~s~~----~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
..++.+. ....+.+|+....+.. .+..|...|++++|+|++++|++++.||.|++|+.-
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp ------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 5554443 3445667776665544 567788999999999999999999999999999974
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.3e-36 Score=262.57 Aligned_cols=294 Identities=10% Similarity=0.060 Sum_probs=210.3
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEe
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHA 133 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw 133 (458)
..+.+|.+.|++++|+|||++||+|+.++ +++|++++++..... +...+..+++.+ +++.+ ++++.|+.|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLH--RTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECT--TSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcC--CCCEEEEEECCccEEEEE
Confidence 34678999999999999999999998775 789999887765543 223578888888 77776 567778999999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEEC
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
|+.+++.+.. +. +...|.+++++++. ++++ .|+.|++||+.++ +.+..+.. +...++++
T Consensus 87 d~~~~~~~~~--~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~-------------~~~~~~~s 146 (355)
T 3vu4_A 87 DDVKKQDVSR--IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR-------------FGGVCEFS 146 (355)
T ss_dssp ETTTTEEEEE--EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE-------------EEEEEEEE
T ss_pred ECCCCcEEEE--EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc-------------CCceEEEE
Confidence 9998877665 33 66789999999864 3333 4789999999988 65555432 23455666
Q ss_pred CCCCcEEEE--ecCCCeEEEEecCCCccCCCccCCCCCCCcCC-CccccccccceeEEEeCCCCcEEEEec-CCc-EEEE
Q 012712 213 PRNANLFAV--AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLF 287 (458)
Q Consensus 213 p~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~-i~i~ 287 (458)
+ .+++. |+.+|.|++||+++.+...............+ ......|...|.+++|+|+|++|++++ +++ |++|
T Consensus 147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp T---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred c---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 6 24444 68999999999987542111000000000111 345667899999999999999999998 557 9999
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-C-ccceeeeeEEEEecCCCcEEEEecCCC
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-G-HRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~s~~~~~l~~~~~dg 365 (458)
|+.+ ...+..+. + |... |.+++| +|++++|++++.|+
T Consensus 224 d~~~--------------------------------------~~~~~~~~~g~h~~~--v~~~~~-s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 224 KTED--------------------------------------GVLVREFRRGLDRAD--VVDMKW-STDGSKLAVVSDKW 262 (355)
T ss_dssp ETTT--------------------------------------CCEEEEEECTTCCSC--EEEEEE-CTTSCEEEEEETTC
T ss_pred ECCC--------------------------------------CcEEEEEEcCCCCCc--EEEEEE-CCCCCEEEEEECCC
Confidence 9987 34556666 4 6664 999999 99999999999999
Q ss_pred eEEEEEecCCeEE--EEee---------------------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 366 RIFIWKKKGGELI--RVIE---------------------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 366 ~i~iwd~~~~~~~--~~~~---------------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
+|++||+..+... ..+. .+......++|++|+++|++++.||.+++|++..++
T Consensus 263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999765311 1111 112234678999999999999999999999987654
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.5e-35 Score=266.39 Aligned_cols=287 Identities=11% Similarity=0.073 Sum_probs=227.7
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee----ccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
...+..+. .+.+++|+|++.++++++.++.|++||+.+++..... ..+|...|.+++|+| ++.++++++.|+.
T Consensus 116 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~ 192 (433)
T 3bws_A 116 ISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANA 192 (433)
T ss_dssp EEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTE
T ss_pred EEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCE
Confidence 34455444 4569999998888888889999999999998876532 247889999999999 9999999999999
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
|++||+.+++.... +..|...+.+++|+|++..++++++.|+.|++||+++++....+. ....+.++
T Consensus 193 v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~~~~~ 259 (433)
T 3bws_A 193 VHVFDLKTLAYKAT--VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-----------KIGLPRGL 259 (433)
T ss_dssp EEEEETTTCCEEEE--EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------CCSEEEEE
T ss_pred EEEEECCCceEEEE--EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------CCCCceEE
Confidence 99999988776655 567888999999999996666777789999999999887665544 22358999
Q ss_pred EECCCCCcEEEEec--------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE-EEec
Q 012712 210 AIDPRNANLFAVAG--------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN 280 (458)
Q Consensus 210 ~~~p~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~ 280 (458)
+|+|+ +.++++++ .|+.|++||+++++... ...+...+.+++|+|+++.+ ++++
T Consensus 260 ~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 260 LLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLID----------------TIGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp EECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE----------------EEEEEECEEEEEECSSTTEEEEEET
T ss_pred EEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEe----------------eccCCCCcceEEECCCCCEEEEEec
Confidence 99998 56777777 58899999998765321 11234578899999999755 5545
Q ss_pred -CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (458)
Q Consensus 281 -~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~ 359 (458)
++.+++||+.++ .....+. +.. .+.+++| +|+|++|+
T Consensus 323 ~~~~v~v~d~~~~--------------------------------------~~~~~~~-~~~--~~~~~~~-s~dg~~l~ 360 (433)
T 3bws_A 323 CCSKIEVYDLKEK--------------------------------------KVQKSIP-VFD--KPNTIAL-SPDGKYLY 360 (433)
T ss_dssp TTTEEEEEETTTT--------------------------------------EEEEEEE-CSS--SEEEEEE-CTTSSEEE
T ss_pred CCCEEEEEECCCC--------------------------------------cEEEEec-CCC--CCCeEEE-cCCCCEEE
Confidence 568999998763 2233333 222 3778998 99999988
Q ss_pred EecC---------------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec-CCcEEEecCCc
Q 012712 360 SGSD---------------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI-ESDIKILTPNA 416 (458)
Q Consensus 360 ~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~~ 416 (458)
+++. ||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8776 579999999999999888864 46899999999999988775 99999999863
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=6.6e-35 Score=265.33 Aligned_cols=322 Identities=14% Similarity=0.088 Sum_probs=244.3
Q ss_pred CCCceEEEE---EecCCCEEEEe--------------cCCCeEEEEECC--Cc--ceeeeeccCCCcceeEEEEccCCCC
Q 012712 60 HRGCVNTVS---FNTDGDILISG--------------SDDRRVILWDWK--TE--RVKLSFHSGHNDNVFQAKIMPFTDD 118 (458)
Q Consensus 60 h~~~v~~~~---~s~~~~~l~s~--------------~~d~~i~iwd~~--~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 118 (458)
....+..++ |+|+++.++.. +.++.+.||.++ ++ +.+..+ . ....+.+++|+| ++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~s~--~~ 134 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-K-TGFQPKSVRFID--NT 134 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-E-CSSCBCCCEESS--SS
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-c-CCCCceEEEEeC--CC
Confidence 445677778 88877665532 233323455443 34 333444 2 334567999999 99
Q ss_pred eEEEEEcCCCcEEEeecccccceeee---eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712 119 RSIVTCAADGQVRHAQILERGGVETK---LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 119 ~~l~s~~~dg~i~vw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
.++++++.++.|++||+.+++..... .+.+|...+.+++|+|++ .++++++.|+.|++||+++++....+..
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~~~---- 209 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATVDL---- 209 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEEEC----
T ss_pred eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEEcC----
Confidence 99999999999999999887765421 245788899999999988 7899999999999999999887766642
Q ss_pred CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (458)
+...+.+++|+|++..++++++.++.|++||+++++.... .. ....+.+++|+|++++
T Consensus 210 ------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~---------------~~-~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 210 ------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK---------------TD-KIGLPRGLLLSKDGKE 267 (433)
T ss_dssp ------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---------------CC-CCSEEEEEEECTTSSE
T ss_pred ------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE---------------ec-CCCCceEEEEcCCCCE
Confidence 3346899999998544446666899999999987753221 11 1345899999999998
Q ss_pred EEEec---------CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712 276 LVSYN---------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (458)
Q Consensus 276 l~~~~---------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (458)
+++++ ++.|++||+.++ +....+ .+.. .+.
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~--------------------------------------~~~~~~-~~~~--~~~ 306 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKE--------------------------------------KLIDTI-GPPG--NKR 306 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTT--------------------------------------EEEEEE-EEEE--CEE
T ss_pred EEEEECCCCccccCCCeEEEEECCCC--------------------------------------cEEeec-cCCC--Ccc
Confidence 88776 447999998763 122222 2222 367
Q ss_pred EEEEecCCCcEE-EEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec---------------CCcEE
Q 012712 347 GVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---------------ESDIK 410 (458)
Q Consensus 347 ~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------d~~i~ 410 (458)
+++| +|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|+
T Consensus 307 ~~~~-~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 307 HIVS-GNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EEEE-CSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred eEEE-CCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence 8888 9999755 566899999999999999888886 6677999999999998888776 57999
Q ss_pred EecCCcccccccccccccEEEEEEecCCcEEEeeec-CCceEEEEE
Q 012712 411 ILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNF-SCSILLFEW 455 (458)
Q Consensus 411 iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-d~~i~~w~~ 455 (458)
+||+.+++..........+.+++|+|||++|++++. |+.|++|+.
T Consensus 385 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 385 VIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred EEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 999999887765555667999999999999988764 999999986
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.9e-35 Score=267.68 Aligned_cols=260 Identities=15% Similarity=0.232 Sum_probs=208.0
Q ss_pred cCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccc--------cceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712 101 SGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILER--------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 171 (458)
..|.+.|++++|+| + +.+|++++.+|.|++|++... .......+.+|...+.+++|+|++..+|++++.
T Consensus 125 ~~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 125 INHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EcCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 57999999999999 7 679999999999999999762 122233477899999999999998558999999
Q ss_pred CCeEEEEeCCCCCccce-eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC
Q 012712 172 DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (458)
Q Consensus 172 dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (458)
||.|++||++.+..... +.... ...+ +...|.+++|+|+++.+|++++.||.|++||+++....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~--~~~~--h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----------- 267 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKN--IFTG--HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----------- 267 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSE--EECC--CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----------
T ss_pred CCeEEEEeCCCCCCCCceeccce--eecC--CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----------
Confidence 99999999988543211 11000 0011 45579999999966889999999999999999976311
Q ss_pred cCCCccccccccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712 251 FCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (458)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
.+......|...|++++|+|++. ++++++ ++.|++||++..
T Consensus 268 -~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~------------------------------------ 310 (430)
T 2xyi_A 268 -KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL------------------------------------ 310 (430)
T ss_dssp -SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT------------------------------------
T ss_pred -cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC------------------------------------
Confidence 11223446788999999999987 677777 568999999863
Q ss_pred cccCceeecCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecC--------------CeEEEEeecCCceeeEEEe
Q 012712 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKG--------------GELIRVIEADRHVVNCIEP 393 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~ 393 (458)
...+..+.+|... |.+++| +|+++ +|++++.||.|++||+.. .+++..+.+|...|++++|
T Consensus 311 -~~~~~~~~~h~~~--v~~i~~-sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 311 -KLKLHSFESHKDE--IFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp -TSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred -CCCeEEeecCCCC--EEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 2345677777774 899999 99985 689999999999999987 3677788899999999999
Q ss_pred cCCCC-eEEEeecCCcEEEecCCccc
Q 012712 394 HPHST-VLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 394 s~~~~-~l~s~~~d~~i~iw~~~~~~ 418 (458)
+|+++ +|++++.||.|+||++....
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCCCCEEEEEECCCCEEEeEccccc
Confidence 99999 89999999999999998653
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=292.65 Aligned_cols=257 Identities=16% Similarity=0.280 Sum_probs=205.8
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCC--CeEEEEEcCCCcE
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQV 130 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~dg~i 130 (458)
..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+ .+|...|++++|+| + +++|++++.||.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAH--PKFGTILASCSYDGKV 79 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--TTSCSEEEEEETTSCE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecC--CCCCCEEEEEeCCCeE
Confidence 4678999999999999999999999999999999997 44555555 78999999999998 6 9999999999999
Q ss_pred EEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
++||+.+++......+..|...|.+++|+|+ + .++++++.||.|++||++++.......... +...|.+
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--------~~~~v~~ 150 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVNS 150 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEEC--------CSSCEEE
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeec--------CCCceEE
Confidence 9999998764444557889999999999999 7 789999999999999999875443332211 4557999
Q ss_pred EEECCC------------CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712 209 IAIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (458)
Q Consensus 209 ~~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (458)
++|+|. ++.++++|+.||.|++||+++....
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~------------------------------------- 193 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------------- 193 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------------------------------------
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------------------------------------
Confidence 999994 2567777777777777777653200
Q ss_pred EEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC--
Q 012712 277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-- 354 (458)
Q Consensus 277 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-- 354 (458)
......+.+|... |.+++| +|+
T Consensus 194 -----------------------------------------------------~~~~~~~~~h~~~--V~~l~~-sp~~~ 217 (753)
T 3jro_A 194 -----------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTVL 217 (753)
T ss_dssp -----------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCCS
T ss_pred -----------------------------------------------------ceeeeeecCCCCc--EEEEEe-ccCCC
Confidence 1122344556654 899998 999
Q ss_pred -CcEEEEecCCCeEEEEEecCCe-----EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 355 -CEYVVSGSDCGRIFIWKKKGGE-----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 355 -~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
+++|++++.||.|++||+.+++ .+.....|...|++++|+|++++|++++.||.|++|++..
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999999999999998864 2333455888999999999999999999999999999884
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.2e-36 Score=270.05 Aligned_cols=282 Identities=14% Similarity=0.128 Sum_probs=219.8
Q ss_pred ceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccce--eeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCC
Q 012712 106 NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~ 181 (458)
....++++| +...++ +++.||.|++|++...... ....+.+|...|.+++|+| ++ .+|++++.||.|++||+.
T Consensus 36 ~~~~~~~~~--~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNP--KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECS--SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECC
T ss_pred CCCcEEECC--CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEcc
Confidence 344578888 665444 5788999999999664322 1223678999999999999 66 789999999999999999
Q ss_pred CCCc-------cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 182 TGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 182 ~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
++.. ...+.. +...|.+++|+|++.++|++++.|+.|++||+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~----------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------- 168 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEG----------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL-------------- 168 (402)
T ss_dssp TTCCSSCBCSCSEEEEC----------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE--------------
T ss_pred CCCCccccCCceEEecC----------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE--------------
Confidence 8743 333321 455799999999855799999999999999999875321
Q ss_pred ccc-cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 255 NLI-GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 255 ~~~-~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
.+. ..|...|.+++|+|++++|++++ ++.|++||+.++ ..
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------------------------------------~~ 210 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--------------------------------------TV 210 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--------------------------------------EE
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC--------------------------------------ce
Confidence 111 45788999999999999999888 558999999873 34
Q ss_pred ceee-cCccceeeeeEEEEecCCCcEEEEe---cCCCeEEEEEecCCeE-EEEee-cCCceeeEEEecCCCCeEEE-eec
Q 012712 333 PQVY-KGHRNCVTVKGVNFFGPKCEYVVSG---SDCGRIFIWKKKGGEL-IRVIE-ADRHVVNCIEPHPHSTVLAS-SGI 405 (458)
Q Consensus 333 ~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~s-~~~ 405 (458)
...+ .+|... .+.+++| +|++++|++| +.|+.|++||+.+++. +.... .|...+.+++|+|++++|++ ++.
T Consensus 211 ~~~~~~~~~~~-~~~~~~~-~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 211 VAEKDRPHEGT-RPVHAVF-VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp EEEEECSSCSS-SCCEEEE-CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred eeeeccCCCCC-cceEEEE-cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 4455 556543 3678888 9999999999 7999999999988654 33333 46778999999999999864 557
Q ss_pred CCcEEEecCCcccc--ccccc--ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 406 ESDIKILTPNAADR--ATLPT--NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 406 d~~i~iw~~~~~~~--~~~~~--~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
|+.|++|++.+++. ..+.. +...|.+++|+|++.++++ .++.+++|++-
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred CCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 99999999998873 23333 4578999999999998875 56689999974
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.3e-34 Score=257.08 Aligned_cols=305 Identities=11% Similarity=0.122 Sum_probs=230.1
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
.++++++.|+.|++||+.+++.+..+ ..| ..+.+++|+| +++.| ++++.|+.|++||+.+++.... +..+ ..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~-~~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIAT--VPAG-SS 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEE--EECS-SS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEE--EECC-CC
Confidence 46888999999999999999887776 444 4589999999 99876 6777899999999988876654 3333 38
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
+.+++|+|+++.++++++.++.|++||+++++....+. ....+.+++|+|++..++++++.++.|++||
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------TGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------CSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 99999999996666777788999999999988766654 2235789999998433447888899999999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE-EEec-CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
+++++.... .. ....+..++|+|+++.+ +++. ++.|++||+.++
T Consensus 145 ~~~~~~~~~---------------~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------ 190 (391)
T 1l0q_A 145 TVTKAVINT---------------VS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------ 190 (391)
T ss_dssp TTTTEEEEE---------------EE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------
T ss_pred CCCCcEEEE---------------Ee-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------
Confidence 988763221 11 12456899999999877 4555 457999998763
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec---CCCeEEEEEecCCeEEEEeecCCce
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGELIRVIEADRHV 387 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (458)
.....+..+. .+.+++| +|++++|++++ .++.|++||+.+++.+..+..|. .
T Consensus 191 --------------------~~~~~~~~~~---~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~ 245 (391)
T 1l0q_A 191 --------------------SVIDTVKVEA---APSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-D 245 (391)
T ss_dssp --------------------EEEEEEECSS---EEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-S
T ss_pred --------------------eEEEEEecCC---CccceEE-CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-C
Confidence 2233333222 3788888 99999999887 68999999999999999888765 4
Q ss_pred eeEEEecCCCCeE-EEeecCCcEEEecCCcccccc-cccccccE---------------EEEEEecCC----------cE
Q 012712 388 VNCIEPHPHSTVL-ASSGIESDIKILTPNAADRAT-LPTNIEQV---------------CFSIYSADY----------WW 440 (458)
Q Consensus 388 v~~~~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~-~~~~~~~v---------------~~~~~s~d~----------~~ 440 (458)
+.+++|+|++++| ++++.|+.|++||+.+++... +..+..+. ....|+.+. ..
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~ 325 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ 325 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence 7899999999977 677889999999999876542 22222211 111233332 34
Q ss_pred EEeeecCCceEEEEE
Q 012712 441 SKSQNFSCSILLFEW 455 (458)
Q Consensus 441 l~s~~~d~~i~~w~~ 455 (458)
+...+.|..+++|++
T Consensus 326 ~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 326 FTDLSKDATEWKWDF 340 (391)
T ss_dssp EEECCBSCSEEEEEC
T ss_pred EEeCCCCceEEEEEC
Confidence 556677888999986
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-35 Score=266.27 Aligned_cols=310 Identities=10% Similarity=0.076 Sum_probs=221.4
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeec-------------------------------------
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH------------------------------------- 100 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~------------------------------------- 100 (458)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 56799999999888 444331
Q ss_pred ----------------cCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecc--cccceeeeeccccccceEEEEEcCC
Q 012712 101 ----------------SGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQIL--ERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 101 ----------------~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
.+|...|.+++|+| ++++| ++++.||.|++|++. +++.........|...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 12344799999999 99996 899999999999998 6666554222356789999999999
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccc----eeeecccCCCCcceeecceEEEEECCC--CCcEEEEecCCCeEEEEecCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~ 235 (458)
+ .+|++++.+|.|++|++.+++... .+.. +...|.+++|+|+ ++.+|++++.|+.|++||+++
T Consensus 161 ~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 161 D-TTVIIADKFGDVYSIDINSIPEEKFTQEPILG----------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp S-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEE----------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred C-CEEEEEeCCCcEEEEecCCcccccccceeeec----------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 9 688999999999999998876543 2221 4457999999996 257999999999999999987
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
++.. .....+|...|.+++|+ ++++|++++ ++.|++||+.++.....+...... ....+
T Consensus 230 ~~~~--------------~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~~~-- 289 (450)
T 2vdu_B 230 CFIV--------------DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI---KPYLN-- 289 (450)
T ss_dssp TTCE--------------EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH---GGGCC--
T ss_pred Ccee--------------eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh---hhhhh--
Confidence 6521 22345678899999999 999999998 558999999876432221100000 00000
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEe--cCC---eEEEEeecCCcee
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGG---ELIRVIEADRHVV 388 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v 388 (458)
....... ..... ........+.+++| +|++++|++++ .++.|++|++ .++ +.+..+..| +.|
T Consensus 290 -------~~~~~~~-~~~~~--~~~~~~~~v~~i~~-~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 290 -------DQHLAPP-RFQNE--NNDIIEFAVSKIIK-SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp -------TTSBC-------------CBCCCEEEEEE-CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred -------hcccccc-ccccc--ccccceEEEEEEEE-eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 0000000 00000 00011124788998 99999999988 8999999999 666 777888888 789
Q ss_pred eEEEecCCCCeEEEeec------CCcEEEecCCc
Q 012712 389 NCIEPHPHSTVLASSGI------ESDIKILTPNA 416 (458)
Q Consensus 389 ~~~~~s~~~~~l~s~~~------d~~i~iw~~~~ 416 (458)
.+++|+|++.++++++. +..|.+|.+..
T Consensus 358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999996544444443 45688887653
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=263.65 Aligned_cols=286 Identities=14% Similarity=0.067 Sum_probs=222.1
Q ss_pred cceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc---ceeeee------------------------------------
Q 012712 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG---GVETKL------------------------------------ 145 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~---~~~~~~------------------------------------ 145 (458)
.++.+++|+| +|++|+++ .++.|++||+.+++ .+....
T Consensus 5 ~p~~~v~~s~--dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTSR--DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEECS--SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEecC--CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 5789999999 99966665 57899999998887 322211
Q ss_pred ----------------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC--CCCccceeeecccCCCCcceeecceE
Q 012712 146 ----------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 146 ----------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
...|...|.+++|+|++..++++++.||.|++||+. +++....+... .+...|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~~~v~ 153 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------CFSKRPN 153 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------ECSSCEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------cCCCCce
Confidence 013444799999999995546899999999999999 77777666421 1445799
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC---CcEEEEec-CCc
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYN-DEF 283 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~-~~~ 283 (458)
+++|+|+ +.+|++++.+|.|++|++.+.+.... .......|...|.+++|+|+ +++|++++ ++.
T Consensus 154 ~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~ 221 (450)
T 2vdu_B 154 AISIAED-DTTVIIADKFGDVYSIDINSIPEEKF-----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH 221 (450)
T ss_dssp EEEECTT-SSEEEEEETTSEEEEEETTSCCCSSC-----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEcCC-CCEEEEEeCCCcEEEEecCCcccccc-----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc
Confidence 9999998 68999999999999999987653210 12234557889999999999 99999988 458
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee-ecCccceeeeeEEEEecCCCcEEEEec
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV-YKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
|++||+.++ ..... +.+|... |.+++| + ++++|++++
T Consensus 222 i~vwd~~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-s-d~~~l~s~~ 259 (450)
T 2vdu_B 222 IKISHYPQC--------------------------------------FIVDKWLFGHKHF--VSSICC-G-KDYLLLSAG 259 (450)
T ss_dssp EEEEEESCT--------------------------------------TCEEEECCCCSSC--EEEEEE-C-STTEEEEEE
T ss_pred EEEEECCCC--------------------------------------ceeeeeecCCCCc--eEEEEE-C-CCCEEEEEe
Confidence 999999863 23344 4567764 899999 8 999999999
Q ss_pred CCCeEEEEEecCCeEEEEeecC-------------------------CceeeEEEecCCCCeEEEee-cCCcEEEecC--
Q 012712 363 DCGRIFIWKKKGGELIRVIEAD-------------------------RHVVNCIEPHPHSTVLASSG-IESDIKILTP-- 414 (458)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~-- 414 (458)
.|+.|++||+.+++++..+..+ ...|.+++|+|++++|++++ .|+.|++|++
T Consensus 260 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 260 GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 9999999999999988887632 34689999999999999998 8999999999
Q ss_pred Ccc---ccc-ccccccccEEEEEEecCCcEEEeeec------CCceEEEEEe
Q 012712 415 NAA---DRA-TLPTNIEQVCFSIYSADYWWSKSQNF------SCSILLFEWL 456 (458)
Q Consensus 415 ~~~---~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~------d~~i~~w~~~ 456 (458)
..+ +.. .+..+ ..+.+++|+|++.+++.++. +..|.+|.+-
T Consensus 340 ~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 340 KQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 444 333 34444 78999999997666665554 4568999864
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=260.89 Aligned_cols=274 Identities=11% Similarity=0.068 Sum_probs=208.4
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc---------c
Q 012712 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---------R 138 (458)
Q Consensus 68 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~---------~ 138 (458)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+| + +++++.|+.|++|+... +
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 345678899999999999999999998877763 56788889998 6 99999999999997653 2
Q ss_pred cceeeeeccccccceEEEEEcC--CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 139 GGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
+.+.. ....|...|.+++|+| ++ .++++++.||.|++||+++++........ +...+.+++|+|+ +
T Consensus 115 ~~~~~-~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------~~~~i~~~~~~pd-g 182 (343)
T 3lrv_A 115 KVLRE-IEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAK---------SDVEYSSGVLHKD-S 182 (343)
T ss_dssp CEEEE-EECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCC---------SSCCCCEEEECTT-S
T ss_pred ceeEE-eecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecC---------CCCceEEEEECCC-C
Confidence 22222 1235668899999999 88 78999999999999999998875443211 3335899999998 7
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-ccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
.+|++|+.||.|++||+++++.. ..... .|...|.+++|+|++.+|++++++.|++||+++....
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~--------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQA--------------SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGT 248 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSC--------------CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTC
T ss_pred CEEEEEcCCCEEEEEECCCCCCC--------------ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcc
Confidence 89999999999999999987632 11223 3788999999999999999999889999999875332
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecC
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG 374 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 374 (458)
.. ...+..|.....-.+++| +|+|++|++++. |+.+++|++..
T Consensus 249 ~~-----------------------------------~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 249 LA-----------------------------------YPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp BS-----------------------------------SCCCBC-----CCEEEEE-CTTSSEEEEEETTTTEEEEEEECT
T ss_pred ee-----------------------------------ecccccccccccceEEEE-CCCCCEEEEecCCCCcEEEEEEcc
Confidence 11 111222222211136888 999999999888 99999999976
Q ss_pred CeEEEEeecCCceeeEEEecC---CCCeEEEeecCCcEEEecCC
Q 012712 375 GELIRVIEADRHVVNCIEPHP---HSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 375 ~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~i~iw~~~ 415 (458)
....... .++..++|+| +.+.+++++.|+.+.++-..
T Consensus 293 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 293 KTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 5443333 5688899998 88999999999999987543
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-36 Score=271.04 Aligned_cols=280 Identities=11% Similarity=0.020 Sum_probs=188.3
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--------CCCE
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--------DGDI 75 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------~~~~ 75 (458)
.++++++.+|++|+.|++|+|||.++++... ......+.||.+.|++++|+| |+++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~----------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIIT----------------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEE----------------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccce----------------eeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 4578888899999999999999999876552 234456789999999999998 8899
Q ss_pred EEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeecccccc---
Q 012712 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQG--- 151 (458)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~--- 151 (458)
||+|+.|++|+|||+.++..+..+ ..|...+.+++|+| ++ .+|++++.||.|++||+.+++.... ...+..
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p--~~~~~l~~~~~d~~v~~wd~~t~~~~~~--~~~~~~~~~ 233 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRP--SNPNQLIVGERNGNIRIFDWTLNLSAEE--NSQTELVKN 233 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEET--TEEEEEEEEETTSEEEEEETTCCC------------CSC
T ss_pred EEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECC--CCCceEEecCCCCEEEEEECCCCccccc--ccccCCccc
Confidence 999999999999999888776666 57889999999999 77 4799999999999999988765443 221111
Q ss_pred -ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 152 -RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 152 -~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
.+......+.. .... . .+ +...+.++.|++.++..+++++.|+.+++
T Consensus 234 ~~~~s~~~~~~~-------------~~~~---------~--------~~--~~~~v~~v~~~~~dg~~l~s~s~d~~i~v 281 (393)
T 4gq1_A 234 PWLLTLNTLPLV-------------NTCH---------S--------SG--IASSLANVRWIGSDGSGILAMCKSGAWLR 281 (393)
T ss_dssp CCSEEEESGGGC------------------------------------C--CSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred ceEEecccccce-------------eeee---------c--------cc--ccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence 11111111111 0000 0 00 33357788887333789999999999999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
||+...+... ....+...+..+.+.|+.+.+.
T Consensus 282 wd~~~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~--------------------------------- 313 (393)
T 4gq1_A 282 WNLFANNDYN---------------EISDSTMKLGPKNLLPNVQGIS--------------------------------- 313 (393)
T ss_dssp EEC----------------------------------CCSCSEEEEC---------------------------------
T ss_pred EECccCCCCc---------------eEeeecCccccEEEcccccccc---------------------------------
Confidence 9998765321 1223344555555555543211
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe-cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF-GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN 389 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 389 (458)
.+.. .....++ .+++.++++|+.||+|++||+.+++.+..+..|..+|.
T Consensus 314 ---------------------------~~~~---~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~ 363 (393)
T 4gq1_A 314 ---------------------------LFPS---LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV 363 (393)
T ss_dssp ---------------------------SSCC---SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred ---------------------------ccCc---ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence 1111 1112221 23556778899999999999999999888888999999
Q ss_pred EEEecCCCCeEEEeecCCcEEEecCC
Q 012712 390 CIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 390 ~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
+++|+|||++||+++.+| +.+|++.
T Consensus 364 svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 364 DFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 999999999999998766 5555543
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.3e-34 Score=262.13 Aligned_cols=255 Identities=14% Similarity=0.156 Sum_probs=203.5
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC----------CCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT----------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
...|.+.|++++|+|+++.+|++++.||.|++||+.. ......+.. +...+.+++|+|++
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG----------HQKEGYGLSWNPNL 193 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC----------CSSCCCCEEECTTS
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC----------CCCCeEEEEeCCCC
Confidence 5579999999999998558999999999999999976 222222221 45578999999985
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGL 293 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~ 293 (458)
..+|++|+.||.|++||+........ ...+......|...|.+++|+| ++.+|++++ ++.|++||+++..
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHR--------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGG--------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCc--------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 44999999999999999987432110 0011233446788999999999 677888877 5689999998642
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEe
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKK 372 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~ 372 (458)
. ......+..|... +.+++| +|+++ +|++|+.||.|++||+
T Consensus 266 ~-----------------------------------~~~~~~~~~~~~~--v~~i~~-~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 266 T-----------------------------------SKPSHTVDAHTAE--VNCLSF-NPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp S-----------------------------------SSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEET
T ss_pred C-----------------------------------CcceeEeecCCCC--eEEEEe-CCCCCCEEEEEeCCCeEEEEeC
Confidence 1 1344556677764 899999 99987 6889999999999999
Q ss_pred cC-CeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcc---------------cccccccccccEEEEEEe
Q 012712 373 KG-GELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA---------------DRATLPTNIEQVCFSIYS 435 (458)
Q Consensus 373 ~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~---------------~~~~~~~~~~~v~~~~~s 435 (458)
.+ .+++..+..|...|.+++|+|+++ +|++++.|+.|+||++... ......+|...|.+++|+
T Consensus 308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 387 (430)
T 2xyi_A 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387 (430)
T ss_dssp TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence 87 567889999999999999999996 6899999999999999872 223456778889999999
Q ss_pred cCCc-EEEeeecCCceEEEEEe
Q 012712 436 ADYW-WSKSQNFSCSILLFEWL 456 (458)
Q Consensus 436 ~d~~-~l~s~~~d~~i~~w~~~ 456 (458)
|++. +|++++.||.|+||+.-
T Consensus 388 p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 388 PNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCEEEEEECCCCEEEeEcc
Confidence 9998 89999999999999963
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1e-33 Score=261.39 Aligned_cols=324 Identities=11% Similarity=0.081 Sum_probs=245.8
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec--ccccceeeee
Q 012712 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI--LERGGVETKL 145 (458)
Q Consensus 68 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~--~~~~~~~~~~ 145 (458)
.|+|++.++++++.|++|.+||..+++.+..+..++. +..++|+| ++++|++++.|+.|++||+ .+++.+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~-- 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAE-- 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEE--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEE--
Confidence 3889999999999999999999999999888744554 88999999 9999999999999999999 66655544
Q ss_pred ccccccceEEEEEcC----CCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCC-cceeecceEEEEECCCCCcEE
Q 012712 146 LGKHQGRAHKLAIEP----GSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~----~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l 219 (458)
+. +...+..++|+| +++ ++++++ .++.|.+||..+++++..+......... .......+.++.++|+++.++
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 44 345679999999 994 556655 5899999999999888777542210000 000122588999999877888
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNP 297 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~ 297 (458)
++...++.|.+||..+.+.... ... .+...+..++|+|+|+++++++ +++|.+||..++
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~-------------~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----- 356 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTV-------------TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----- 356 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEE-------------EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-----
T ss_pred EEECCCCeEEEEEecCCCccee-------------EEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-----
Confidence 8899999999999987642110 011 1244677899999999766554 568999999874
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCcccccCceeecC----ccceeeeeEEEEecCC-CcEEEEec-CCCeEEEEE
Q 012712 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG----HRNCVTVKGVNFFGPK-CEYVVSGS-DCGRIFIWK 371 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~s~~-~~~l~~~~-~dg~i~iwd 371 (458)
+....+.. |... ...|++|+ +.+++++. .|++|.+||
T Consensus 357 ---------------------------------~l~~~i~~g~~ph~g~----g~~~~~p~~g~~~~s~~~~d~~V~v~d 399 (543)
T 1nir_A 357 ---------------------------------RLSALVDVGKTPHPGR----GANFVHPKYGPVWSTSHLGDGSISLIG 399 (543)
T ss_dssp ---------------------------------EEEEEEECSSSBCCTT----CEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ---------------------------------eEEEeeccCCCCCCCC----CcccCCCCCccEEEeccCCCceEEEEE
Confidence 23333332 3221 12223677 66666665 589999999
Q ss_pred ecC-------CeEEEEeecCCceeeEEEecCCCCeEEEee-------cCCcEEEecCCccccc-cc---------ccccc
Q 012712 372 KKG-------GELIRVIEADRHVVNCIEPHPHSTVLASSG-------IESDIKILTPNAADRA-TL---------PTNIE 427 (458)
Q Consensus 372 ~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~d~~i~iw~~~~~~~~-~~---------~~~~~ 427 (458)
+.+ ++.++++.+|.+.+..++++|++++|++++ .+++|.+||+.+++.. .. ..+..
T Consensus 400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~ 479 (543)
T 1nir_A 400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 479 (543)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC
Confidence 988 899999999988899999999999999987 3789999999988765 32 35567
Q ss_pred cEEEEEEecCCcEEEeee-----cCCceEEEEE
Q 012712 428 QVCFSIYSADYWWSKSQN-----FSCSILLFEW 455 (458)
Q Consensus 428 ~v~~~~~s~d~~~l~s~~-----~d~~i~~w~~ 455 (458)
.+..+.|+|||++|..+. .|+.|.|||-
T Consensus 480 ~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 480 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred ceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 799999999998887653 4799999983
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=284.10 Aligned_cols=264 Identities=16% Similarity=0.178 Sum_probs=210.0
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEE
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQH 177 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~i 177 (458)
+.+|.+.|++++|+| ++++|++++.||.|++|++..+.......+.+|...|.+++|+|+ + .+|++++.||.|++
T Consensus 5 l~gH~~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCS--SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEE
T ss_pred cccCcceeEEEEECC--CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEE
Confidence 478999999999999 999999999999999999985544444558899999999999987 6 78999999999999
Q ss_pred EeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (458)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (458)
||+++++........ + +...|.+++|+|++ +.++++|+.||.|++||+++.... ....
T Consensus 82 wd~~~~~~~~~~~~~------~--h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-------------~~~~ 140 (753)
T 3jro_A 82 WKEENGRWSQIAVHA------V--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-------------SPII 140 (753)
T ss_dssp EEEETTEEEEEEEEC------C--CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-------------CCEE
T ss_pred EECCCCccccccccc------C--CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-------------ceeE
Confidence 999987632222211 1 45579999999973 579999999999999999876421 1223
Q ss_pred ccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
...|...|.+++|+|.....
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~------------------------------------------------------------ 160 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEE------------------------------------------------------------ 160 (753)
T ss_dssp EECCSSCEEEEEECCCC---------------------------------------------------------------
T ss_pred eecCCCceEEEEecCccccc------------------------------------------------------------
Confidence 34456677777777753100
Q ss_pred cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----eEEEEeecCCceeeEEEecCC---CCeEEEeecCCcE
Q 012712 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPH---STVLASSGIESDI 409 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~i 409 (458)
..... ..++++++++|+.||.|++||+.++ .....+.+|...|++++|+|+ +++|++++.||.|
T Consensus 161 --------~~~~~-~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 161 --------DGEHN-GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231 (753)
T ss_dssp ---------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred --------ccccc-cCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence 00001 1567899999999999999999877 566788899999999999999 8999999999999
Q ss_pred EEecCCccc------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 410 KILTPNAAD------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 410 ~iw~~~~~~------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
++||+.+++ ......|...|++++|+|+|.++++++.||.|++|++-
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999998863 23445678889999999999999999999999999964
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-35 Score=255.31 Aligned_cols=262 Identities=8% Similarity=0.012 Sum_probs=199.2
Q ss_pred CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---------CCccc
Q 012712 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---------GAATE 187 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~ 187 (458)
++.+|++|+.||.|++||+.+++.+... . ...|.++.++|+ +++++.|+.|++|+... ++...
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~--~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTI--T--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEE--E--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEE--e--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 8899999999999999999988876553 2 467888888886 89999999999997763 22222
Q ss_pred eeeecccCCCCcceeecceEEEEECC--CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccccee
Q 012712 188 LFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT 265 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (458)
.+.. .+...|.+++|+| + +.++++++.||.|++||+++++.. ......+...+.
T Consensus 119 ~~~~---------~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~--------------~~~~~~~~~~i~ 174 (343)
T 3lrv_A 119 EIEV---------DSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQY--------------IVHSAKSDVEYS 174 (343)
T ss_dssp EEEC---------CCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEE--------------EEECCCSSCCCC
T ss_pred Eeec---------CCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEE--------------EEEecCCCCceE
Confidence 2211 1335799999999 8 689999999999999999987531 111233455799
Q ss_pred EEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc-eeecC-ccce
Q 012712 266 GLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP-QVYKG-HRNC 342 (458)
Q Consensus 266 ~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~ 342 (458)
+++|+|++.+|++++ ++.|++||++++ ... ..+.. |...
T Consensus 175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~--------------------------------------~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDGILDVYNLSSP--------------------------------------DQASSRFPVDEEAK 216 (343)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEESSCT--------------------------------------TSCCEECCCCTTSC
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCC--------------------------------------CCCccEEeccCCCC
Confidence 999999999999987 568999999874 223 45565 7764
Q ss_pred eeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec---CCceee--EEEecCCCCeEEEeec-CCcEEEecCCc
Q 012712 343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---DRHVVN--CIEPHPHSTVLASSGI-ESDIKILTPNA 416 (458)
Q Consensus 343 ~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~l~s~~~-d~~i~iw~~~~ 416 (458)
|.+++| +|++++|++++ ++.|++||+.+++.+..+.. |...+. +++|+|++++|++++. |+.|++|++..
T Consensus 217 --v~~l~f-s~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 217 --IKEVKF-ADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp --EEEEEE-CTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred --EEEEEE-eCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 999999 99999999999 55999999998876655443 444444 5999999999999988 99999999876
Q ss_pred ccccccccccccEEEEEEec---CCcEEEeeecCCceEEEEE
Q 012712 417 ADRATLPTNIEQVCFSIYSA---DYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 417 ~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~~d~~i~~w~~ 455 (458)
....... .++..++|+| ++..+++++.|+.+.++-.
T Consensus 293 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 293 KTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred cccceEe---cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 5432111 5677888998 8889999999999888743
No 126
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.4e-33 Score=279.74 Aligned_cols=361 Identities=11% Similarity=0.046 Sum_probs=266.0
Q ss_pred CCCCCCCCCeEEEeeCC------CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCce-------EEEEE
Q 012712 3 DASNNNNNKRARTSVDK------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCV-------NTVSF 69 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d------~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~ 69 (458)
.+.|||||++||.++.+ ..|++||+.+|+. +.+..|...+ .+++|
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~----------------------~~lt~~~~~~~~~~~~~~~~~~ 114 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI----------------------KRITYFSGKSTGRRMFTDVAGF 114 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE----------------------EECCCCCEEEETTEECSEEEEE
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe----------------------EEcccCCCcccccccccccccC
Confidence 35689999999988643 3799999987652 2467788888 99999
Q ss_pred ecCCCEEEEecCC------CeEEEEECCCcceeee---------------------------------------------
Q 012712 70 NTDGDILISGSDD------RRVILWDWKTERVKLS--------------------------------------------- 98 (458)
Q Consensus 70 s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~--------------------------------------------- 98 (458)
+|||+++++++.+ ..|.+|++.+++....
T Consensus 115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~ 194 (1045)
T 1k32_A 115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG 194 (1045)
T ss_dssp CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence 9999977777754 4688888765543210
Q ss_pred ---eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCe
Q 012712 99 ---FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (458)
Q Consensus 99 ---~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 174 (458)
.+.+|...+.++.|++ + .++++++.++.+++|.+.... .... +..|. .+...+|+|+|. .++.+ .++.
T Consensus 195 ~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~--l~~~~-~~~~~~~SpDG~-~la~~-~~~~ 266 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRK--HTSFT-DYYPRHLNTDGR-RILFS-KGGS 266 (1045)
T ss_dssp EEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEE--CCCCC-SSCEEEEEESSS-CEEEE-ETTE
T ss_pred CeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceE--ecCCC-CcceeeEcCCCC-EEEEE-eCCE
Confidence 0135667788889988 7 677788888999999876422 2222 44444 466789999994 45555 5899
Q ss_pred EEEEeCCCCCccceeeecccC-CCCcceeecceEEEEEC-CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcC
Q 012712 175 VQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIAID-PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (458)
|++||+..... ..+...... ......+...+.+++|+ |+ +..+++++ ++.|++|++..++..
T Consensus 267 i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~------------- 330 (1045)
T 1k32_A 267 IYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVL------------- 330 (1045)
T ss_dssp EEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEE-------------
T ss_pred EEEecCCceEe-eeeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceE-------------
Confidence 99999944332 222211000 00000123358899999 98 67787776 789999998765421
Q ss_pred CCcccccccc-ceeEEEeCCCCcEEEEecCC-cEE-EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712 253 PPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY-LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (458)
Q Consensus 253 ~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~-~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (458)
....+.. .+..++|+ +|+.|+.++++ .+. +|++..+
T Consensus 331 ---~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~------------------------------------- 369 (1045)
T 1k32_A 331 ---KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG------------------------------------- 369 (1045)
T ss_dssp ---ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-------------------------------------
T ss_pred ---EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-------------------------------------
Confidence 1222344 78999999 99998888764 577 8887653
Q ss_pred ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC--
Q 012712 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES-- 407 (458)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-- 407 (458)
....+.+|.. .+..++| +|||++|++++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++
T Consensus 370 --~~~~l~~~~~--~~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 370 --KAEKFEENLG--NVFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp --CEEECCCCCC--SEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred --CceEecCCcc--ceeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence 1222334433 3788998 99999999999999999999999998888878999999999999999999887654
Q ss_pred --------cEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 408 --------DIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 408 --------~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.|++||+.+++...+..|...+..++|+|||++|++++.++...+|+.
T Consensus 445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 899999999887788888888999999999999999998888777763
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=9.5e-33 Score=254.95 Aligned_cols=339 Identities=13% Similarity=0.057 Sum_probs=252.5
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecCCC
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDR 83 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (458)
.++|++.++++++.|++|.+||..+++++. ++. +|. +.+++|+|||++|++++.|+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---------------------~i~~g~~--~~~v~~spdg~~l~v~~~d~ 200 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---------------------VIDTGYA--VHISRMSASGRYLLVIGRDA 200 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---------------------EEECSTT--EEEEEECTTSCEEEEEETTS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---------------------EEecCcc--cceEEECCCCCEEEEECCCC
Confidence 367888899999999999999999988763 355 343 88999999999999999999
Q ss_pred eEEEEEC--CCcceeeeeccCCCcceeEEEEccC--CCCeEEEEEcC-CCcEEEeecccccceeeeeccc--------cc
Q 012712 84 RVILWDW--KTERVKLSFHSGHNDNVFQAKIMPF--TDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQ 150 (458)
Q Consensus 84 ~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~--------~~ 150 (458)
.|.+||+ .+++.+..+. +...+..++|+|. .++++|++++. +++|.+||..+.+.+......+ |.
T Consensus 201 ~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 201 RIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp EEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred eEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence 9999999 7888877773 4567899999972 16788888874 8999999998887766533221 22
Q ss_pred c-ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE-EEecCCCeE
Q 012712 151 G-RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYT 228 (458)
Q Consensus 151 ~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i 228 (458)
. .+..+.++|+++.++++...++.|.+||+.+.+........ ....+..++|+|+ ++++ +++..+++|
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---------~~~~~~~~~~spd-g~~l~va~~~~~~v 348 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---------AAPFLHDGGWDSS-HRYFMTAANNSNKV 348 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---------CCSSCCCEEECTT-SCEEEEEEGGGTEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---------cCcCccCceECCC-CCEEEEEecCCCeE
Confidence 3 68899999998888889999999999999887654422211 1224678999998 4554 455678999
Q ss_pred EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEec--CCcEEEEEccCCCCCCCCCCCCccc
Q 012712 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
.+||..++++......+ ...|.+....+ ++|+ +.+++++. +++|.+|++.+.....
T Consensus 349 ~v~D~~tg~l~~~i~~g-----------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--------- 407 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVG-----------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--------- 407 (543)
T ss_dssp EEEETTTTEEEEEEECS-----------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------
T ss_pred EEEECCCCeEEEeeccC-----------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------
Confidence 99999998754332110 01133223333 4676 67777764 5689999998632110
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-------CCCeEEEEEecCCeEE
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------DCGRIFIWKKKGGELI 378 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~ 378 (458)
...+.++.+.+|... +..+++ +|++++|++++ .+++|.+||+.+++..
T Consensus 408 ----------------------~~~~~v~~l~~~g~~--~~~v~~-~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 408 ----------------------YAWKKVAELQGQGGG--SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp ----------------------TBTSEEEEEECSCSC--CCCEEC-CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred ----------------------hcCeEEEEEEcCCCC--ceEEEc-CCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 013456777777654 567887 99999999987 2679999999998877
Q ss_pred -EEe--------ecCCceeeEEEecCCCCeEEEee-----cCCcEEEecCCccccccccc
Q 012712 379 -RVI--------EADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRATLPT 424 (458)
Q Consensus 379 -~~~--------~~~~~~v~~~~~s~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~~~ 424 (458)
..+ ..+...+..++|+|+|+.|+++. .|+.|.|||..++++.....
T Consensus 463 ~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 463 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 554 34567899999999999888652 47999999999998765443
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=6.4e-33 Score=231.87 Aligned_cols=291 Identities=14% Similarity=0.090 Sum_probs=200.5
Q ss_pred EeeeeeEeecCCC----ceEEEEEecCCC---EEEEecCCCeEEEEECCCc---ceeeeeccCCCcceeEEEEccCCCCe
Q 012712 50 RLGIYAKLDKHRG----CVNTVSFNTDGD---ILISGSDDRRVILWDWKTE---RVKLSFHSGHNDNVFQAKIMPFTDDR 119 (458)
Q Consensus 50 ~~~~~~~~~~h~~----~v~~~~~s~~~~---~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~ 119 (458)
.++++..|+.-.+ .+.++.|-..|. .+++++. ..|++|+..++ +.+.+. ..|..+|..+.+.| |..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~ 99 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVP--DVY 99 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCT--TCC
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-eccCceeEEEEEcC--ccc
Confidence 4566677775544 355666655443 5677776 68999999988 677776 78999999999999 654
Q ss_pred EEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC----CCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 120 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
-|+...- -.-+...|++++++|+ + +.+++++.+ +.+|++.+
T Consensus 100 ~~~~~~~-------------------~~~~~~~v~sla~spd~~~~~-~~l~s~g~~--~~v~~l~~------------- 144 (356)
T 2w18_A 100 NLVCVAL-------------------GNLEIREIRALFCSSDDESEK-QVLLKSGNI--KAVLGLTK------------- 144 (356)
T ss_dssp SCEEEEE-------------------CSSSEEEEEEECC------CC-EEEEEEEEE--EEEEEETT-------------
T ss_pred ceeeeee-------------------ccccccceEEEEECCCccccc-cEEEeCCCe--EEEEecCC-------------
Confidence 3332211 1124567899999999 7 677877743 66675432
Q ss_pred CCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCC-
Q 012712 196 DRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD- 271 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 271 (458)
++++.+++ .|+.|++|++.. ++. ......|...+..++|+|
T Consensus 145 --------------------g~lv~ss~~g~d~~V~~~~~s~dG~~---------------~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 145 --------------------RRLVSSSGTLSDQQVEVMTFAEDGGG---------------KENQFLMPPEETILTFAEV 189 (356)
T ss_dssp --------------------TEEEEEESSSTTCEEEEEEECTTSCE---------------EEEEEECCCSSCEEEEEEE
T ss_pred --------------------CcEEEecccCCCCcEEEEEECCCCce---------------eeeeccCCCceeeEEeecc
Confidence 33444422 467777777743 321 112224566788888988
Q ss_pred --CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc-eeeeeE
Q 012712 272 --QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-CVTVKG 347 (458)
Q Consensus 272 --~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 347 (458)
++.+|++++ |++|++||+.+ ++.++.+.+|.. ...+.+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~T--------------------------------------Gk~l~tL~g~~~~v~~v~~ 231 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKT--------------------------------------GQLLKKMHIDDSYQASVCH 231 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTT--------------------------------------CCEEEEEECCC---CCCEE
T ss_pred CCCCceEEEecCCCcEEEEECCC--------------------------------------CcEEEEEcCCCcceeeeEE
Confidence 779999988 55899999988 445666665442 223667
Q ss_pred EEEecCCCcEE------------EEecCCCeEEEEEecCCeEEEEe-----ecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712 348 VNFFGPKCEYV------------VSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPHSTVLASSGIESDIK 410 (458)
Q Consensus 348 ~~~~s~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 410 (458)
++| +|+|+++ ++|+.|++|++||..+++.+..+ .+|...+.+..+ ++.++|+++.|++|+
T Consensus 232 vaf-SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIk 308 (356)
T 2w18_A 232 KAY-SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIA 308 (356)
T ss_dssp EEE-EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEE
T ss_pred EEE-CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEE
Confidence 788 9999987 56888999999999999988766 366655444444 478999999999999
Q ss_pred EecCCccccc-ccccccccEE-EEEEecCCcEEEeeecCCceEEEEE
Q 012712 411 ILTPNAADRA-TLPTNIEQVC-FSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 411 iw~~~~~~~~-~~~~~~~~v~-~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
|||+.++++. .+.+|...+. .++|||||++|++|+.|++|+|||+
T Consensus 309 IWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 309 IWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999876 5566777655 6899999999999999999999996
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.6e-33 Score=233.38 Aligned_cols=279 Identities=13% Similarity=0.050 Sum_probs=171.8
Q ss_pred EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe--cCCCeEEEEEC
Q 012712 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG--SDDRRVILWDW 90 (458)
Q Consensus 13 l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~i~iwd~ 90 (458)
+++++ ...|++|+..++. .++.++++.+|+.+|..+.+.||-.-|++. +.=..-.++.+
T Consensus 57 ~~~~~-~~~v~lw~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sl 117 (356)
T 2w18_A 57 IITAC-EDVVSLWKALDAW------------------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRAL 117 (356)
T ss_dssp EEEEE-SSEEEEEEESSSS------------------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEE
T ss_pred EEEec-cceEEEcccCCCc------------------cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEE
Confidence 67777 6689999999762 234456677777777777777754322211 11000111111
Q ss_pred --CCc--c-eeeeeccCCCcceeEEEEccCCCCeEEEEEc--CCCcEEEeeccc-ccceeeeeccccccceEEEEEcC--
Q 012712 91 --KTE--R-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEP-- 160 (458)
Q Consensus 91 --~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~-- 160 (458)
... . .......+|...|..+ + +++++.+++ .|+.|++|++.. ++.+.. +..|...+..++|+|
T Consensus 118 a~spd~~~~~~~l~s~g~~~~v~~l---~--~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s--~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 118 FCSSDDESEKQVLLKSGNIKAVLGL---T--KRRLVSSSGTLSDQQVEVMTFAEDGGGKEN--QFLMPPEETILTFAEVQ 190 (356)
T ss_dssp CC------CCEEEEEEEEEEEEEEE---T--TTEEEEEESSSTTCEEEEEEECTTSCEEEE--EEECCCSSCEEEEEEEE
T ss_pred EECCCccccccEEEeCCCeEEEEec---C--CCcEEEecccCCCCcEEEEEECCCCceeee--eccCCCceeeEEeeccC
Confidence 000 0 0000112333334333 4 666666644 578888888844 444433 567888888899988
Q ss_pred -CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 161 -GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 161 -~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
++ .+|++++.|++|++||+++++.+..+.... .+...+.+++|+|+ +.++++++.+.. +|+
T Consensus 191 g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-------~~v~~v~~vafSpd-G~~lvs~s~~~~--~w~------- 252 (356)
T 2w18_A 191 GMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDD-------SYQASVCHKAYSEM-GLLFIVLSHPCA--KES------- 252 (356)
T ss_dssp TST-TEEEEEETTSEEEEEETTTCCEEEEEECCC----------CCCEEEEEEET-TEEEEEEC----------------
T ss_pred CCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCC-------cceeeeEEEEECCC-CCEEEEeccCCC--cce-------
Confidence 55 689999999999999999999888875321 12336788899997 677765543211 121
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
+++++.+ ++++||..+++
T Consensus 253 ------------------------------------laSGs~D~tIklWd~~tgk------------------------- 271 (356)
T 2w18_A 253 ------------------------------------ESLRSPVFQLIVINPKTTL------------------------- 271 (356)
T ss_dssp -----------------------------------------CCEEEEEEETTTTE-------------------------
T ss_pred ------------------------------------eeccCCCcEEEEEECCCCE-------------------------
Confidence 2223322 44555544321
Q ss_pred ccCCCCCCcccccCceee-----cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee-EEE
Q 012712 319 AASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIE 392 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~ 392 (458)
.+..+ .+|... +.+..+ ++.++++|+.|++|+|||+.+++++.++.+|...+. .++
T Consensus 272 -------------~l~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 272 -------------SVGVMLYCLPPGQAGR--FLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp -------------EEEEEEECCCTTCCCC--EEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred -------------EEEEEEeeccCCCcce--eEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 11111 133322 233333 478999999999999999999999999999987655 589
Q ss_pred ecCCCCeEEEeecCCcEEEecC
Q 012712 393 PHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 393 ~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
|+|||++|++|+.|++|+|||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999985
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=5.9e-33 Score=249.16 Aligned_cols=303 Identities=15% Similarity=0.103 Sum_probs=227.7
Q ss_pred CCCceEEEEEecCC-CEEEEec----CCC----eEEEEEC--CCcceeee-eccCCCcceeEEEEccC------------
Q 012712 60 HRGCVNTVSFNTDG-DILISGS----DDR----RVILWDW--KTERVKLS-FHSGHNDNVFQAKIMPF------------ 115 (458)
Q Consensus 60 h~~~v~~~~~s~~~-~~l~s~~----~d~----~i~iwd~--~~~~~~~~-~~~~~~~~i~~~~~~~~------------ 115 (458)
+...+....|++.| +++++|+ .+| .|+|||+ .+++.+.. .+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34577888898887 4666775 467 8999999 88886632 23678888887777640
Q ss_pred CCCeEEEEEcCC------CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC---eEEEEeCCCCCcc
Q 012712 116 TDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAAT 186 (458)
Q Consensus 116 ~~~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~ 186 (458)
..+..++.++.+ +.|++||+.... .. .+..|...+.+++|+|++ +.|++++.++ .|++||+++++..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~--~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF--VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE--EEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCC-CE--EEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEE
Confidence 015667666654 799999997433 33 367788999999999999 5678777765 9999999988765
Q ss_pred ceeeecccCCCCcceeecceEEEEECCCCCcEEE-EecCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
.... +...+.+++|+|+ ++.|+ +++.++. |++||+++++. .....+...
T Consensus 217 ~l~~-----------~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~ 268 (415)
T 2hqs_A 217 QVAS-----------FPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI----------------RQVTDGRSN 268 (415)
T ss_dssp EEEC-----------CSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE----------------EECCCCSSC
T ss_pred Eeec-----------CCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE----------------EeCcCCCCc
Confidence 3222 3346899999998 56555 6766554 99999987652 122335568
Q ss_pred eeEEEeCCCCcEEEEecC-C---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 264 ITGLAFSDQSELLVSYND-E---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 264 i~~~~~~~~~~~l~~~~~-~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
+.+++|+|+|+.|+++++ + .|++||+.++. ...+..+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---------------------------------------~~~l~~~ 309 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---------------------------------------PQRITWE 309 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------------------------------CEECCCS
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------------------------------------EEEEecC
Confidence 999999999998887774 3 57888877632 2223333
Q ss_pred cceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEec
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILT 413 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~ 413 (458)
.. .+.+++| +|||++|++++.+ ..|++||+.+++. ..+..+. .+.+++|+|||++|++++.++ .|++|+
T Consensus 310 ~~--~~~~~~~-spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 310 GS--QNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SS--EEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CC--cccCeEE-CCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 33 3778888 9999999988764 5899999988876 4555554 789999999999999988877 799999
Q ss_pred CCcccccccccccccEEEEEEecCC
Q 012712 414 PNAADRATLPTNIEQVCFSIYSADY 438 (458)
Q Consensus 414 ~~~~~~~~~~~~~~~v~~~~~s~d~ 438 (458)
+.++....+..|.+.|.+++|+|.-
T Consensus 385 ~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 385 TDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTSCCEEECCCSSSEEEEEEECCCC
T ss_pred CCCCcEEEeeCCCCCCcCCcccccc
Confidence 9988888889999999999999965
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.8e-32 Score=274.54 Aligned_cols=356 Identities=10% Similarity=0.034 Sum_probs=259.5
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC------C
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD------R 83 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------~ 83 (458)
+++|+..+. +.|++|++.+|+.. .+.+|.+.|.+++|||||++||+++.+ .
T Consensus 24 ~~~iaf~~~-~~l~~~~~~gg~~~----------------------~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~ 80 (1045)
T 1k32_A 24 GDRIIFVCC-DDLWEHDLKSGSTR----------------------KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTA 80 (1045)
T ss_dssp TTEEEEEET-TEEEEEETTTCCEE----------------------EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred CCEEEEEEC-CcEEEEECCCCcEE----------------------EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCC
Confidence 357787774 78999999876532 467899999999999999999987543 4
Q ss_pred eEEEEECCCcceeeeeccCCCcce-------eEEEEccCCCCeEEEEEcCC------CcEEEeecccccceee-------
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNV-------FQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVET------- 143 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~~~~------- 143 (458)
.|++|++.+++. ..+ ..|...+ ..++|+| ||+++++++.+ ..|.+|++.++.....
T Consensus 81 ~i~~~d~~~g~~-~~l-t~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~ 156 (1045)
T 1k32_A 81 DLYFYNGENGEI-KRI-TYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH 156 (1045)
T ss_dssp EEEEEETTTTEE-EEC-CCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE
T ss_pred eEEEEECCCCCe-EEc-ccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcce
Confidence 899999988764 444 6788888 9999999 99977777754 3577777755432110
Q ss_pred ----------------------------------------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-
Q 012712 144 ----------------------------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT- 182 (458)
Q Consensus 144 ----------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~- 182 (458)
..+.+|...+.++.|+++ .++++++.++.+.+|.+..
T Consensus 157 ~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 157 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETT
T ss_pred eeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCC
Confidence 112346667788888876 5777888889889997653
Q ss_pred CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc
Q 012712 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (458)
+.....+.. ...+...+|+|+ ++.++.+ .++.|++||+...+.. ....... ........+..
T Consensus 235 g~~~~~l~~-----------~~~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~----~~~~~~~~~~~ 296 (1045)
T 1k32_A 235 GKDLRKHTS-----------FTDYYPRHLNTD-GRRILFS-KGGSIYIFNPDTEKIE-KIEIGDL----ESPEDRIISIP 296 (1045)
T ss_dssp SCSCEECCC-----------CCSSCEEEEEES-SSCEEEE-ETTEEEEECTTTCCEE-ECCCCCC----CBCCSEEEECG
T ss_pred CCcceEecC-----------CCCcceeeEcCC-CCEEEEE-eCCEEEEecCCceEee-eeccCcc----ccccccccccc
Confidence 222222221 113556799998 5777776 5899999998443321 1000000 00001112345
Q ss_pred ceeEEEeC-CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712 263 GITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (458)
Q Consensus 263 ~i~~~~~~-~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
.+..++|+ |+|+.|++++++.+++|+...+. ...+..+..
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~---------------------------------------~~~~~~~~~ 337 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTY---------------------------------------VLKVPEPLR 337 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSB---------------------------------------EEECSCCSC
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCc---------------------------------------eEEccCCCc
Confidence 78999999 99999999988899999986531 222334433
Q ss_pred eeeeeEEEEecCCCcEEEEecCCCeEE-EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 342 CVTVKGVNFFGPKCEYVVSGSDCGRIF-IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
. .+..++| + ||+.|++++.++.+. +|++.+++.. .+.+|...+..++|+|||++|++++.++.|++||+.+++..
T Consensus 338 ~-~~~~~~~-s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~ 413 (1045)
T 1k32_A 338 I-RYVRRGG-D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 413 (1045)
T ss_dssp E-EEEEECS-S-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred c-eEEeeeE-c-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE
Confidence 1 3778888 8 999999988888899 9999777654 44478788999999999999999999999999999998776
Q ss_pred ccc-cccccEEEEEEecCCcEEEeeecCC----------ceEEEEE
Q 012712 421 TLP-TNIEQVCFSIYSADYWWSKSQNFSC----------SILLFEW 455 (458)
Q Consensus 421 ~~~-~~~~~v~~~~~s~d~~~l~s~~~d~----------~i~~w~~ 455 (458)
.+. .|...+.+++|||||++|++++.++ .|++||.
T Consensus 414 ~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 414 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 555 7778899999999999998887654 8999984
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=1.1e-31 Score=240.85 Aligned_cols=293 Identities=10% Similarity=0.052 Sum_probs=218.5
Q ss_pred CCCC-eEEEee----CCC----cEEEEEc--cccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-----
Q 012712 8 NNNK-RARTSV----DKA----LVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT----- 71 (458)
Q Consensus 8 ~~~~-~l~~~~----~d~----~i~iw~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----- 71 (458)
+.+. .+++|+ .|| .|+|||+ .+|+.+.. ..+.+|...+..+++++
T Consensus 72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d~~~ 132 (415)
T 2hqs_A 72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-------------------NSYKVNKQWLRYAGHTASDEVF 132 (415)
T ss_dssp TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-------------------EEEEECGGGHHHHHHHHHHHHH
T ss_pred hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-------------------eEEEcChhHHHHHHHHHHHHHH
Confidence 4444 466776 567 8999999 88875522 35778888888777765
Q ss_pred ---------CCCEEEEecCC------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---cEEEe
Q 012712 72 ---------DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHA 133 (458)
Q Consensus 72 ---------~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~i~vw 133 (458)
.+..++.++.+ +.|++||++.+. ...+ .+|...+.+++|+| +++.|++++.++ .|++|
T Consensus 133 ~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l-~~~~~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 133 EKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp HHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE-EEESSCEEEEEECT--TSSEEEEEECTTSSCEEEEE
T ss_pred HHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE-eCCCCcceeeEEcC--CCCEEEEEEecCCCcEEEEE
Confidence 25566666554 799999997543 4444 57889999999999 999999999875 99999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
|+.+++... +..|...+.+++|+|++..++++++.++. |++||+++++...... +...+.+++|
T Consensus 209 d~~tg~~~~---l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~ 274 (415)
T 2hqs_A 209 TLANGAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTW 274 (415)
T ss_dssp ETTTCCEEE---EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-----------CSSCEEEEEE
T ss_pred ECCCCcEEE---eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-----------CCCcccceEE
Confidence 998876542 55677889999999999655557776654 9999999876532221 3346889999
Q ss_pred CCCCCcEEEEecC-CC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC----CcE
Q 012712 212 DPRNANLFAVAGS-DE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFI 284 (458)
Q Consensus 212 ~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~i 284 (458)
+|+ ++.|++++. ++ .|++||+.+++. .....+...+..++|+|+|++|++++. ..|
T Consensus 275 spd-g~~l~~~s~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 275 FPD-SQNLAFTSDQAGRPQVYKVNINGGAP----------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp CTT-SSEEEEEECTTSSCEEEEEETTSSCC----------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred CCC-CCEEEEEECCCCCcEEEEEECCCCCE----------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEE
Confidence 998 577776665 45 677788877542 112223457889999999999988763 269
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
++||+.++. ...+..+. .+.+++| +|+|++|++++.+
T Consensus 338 ~~~d~~~~~---------------------------------------~~~l~~~~---~~~~~~~-spdg~~l~~~s~~ 374 (415)
T 2hqs_A 338 AKQDLATGG---------------------------------------VQVLSSTF---LDETPSL-APNGTMVIYSSSQ 374 (415)
T ss_dssp EEEETTTCC---------------------------------------EEECCCSS---SCEEEEE-CTTSSEEEEEEEE
T ss_pred EEEECCCCC---------------------------------------EEEecCCC---CcCCeEE-cCCCCEEEEEEcC
Confidence 999988642 12333333 3788888 9999999988877
Q ss_pred C---eEEEEEecCCeEEEEeecCCceeeEEEecCCCC
Q 012712 365 G---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398 (458)
Q Consensus 365 g---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (458)
+ .|++||+. ++....+..|.+.|.+++|+|.-.
T Consensus 375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 6 89999985 666788899999999999999754
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=1.2e-30 Score=253.30 Aligned_cols=330 Identities=12% Similarity=0.089 Sum_probs=230.6
Q ss_pred CCceEEEEEecCCCEEEEecC-CC-----eEEEEECCCcceeeeeccCCC------------------------cceeEE
Q 012712 61 RGCVNTVSFNTDGDILISGSD-DR-----RVILWDWKTERVKLSFHSGHN------------------------DNVFQA 110 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~~i~~~ 110 (458)
...|.+++|||||++|++++. |+ .|++||+.+++....+ ..+. ..+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 467999999999999999988 88 9999999998765544 2322 348899
Q ss_pred EEccCCCCeEEEEEcCCCcEEEeeccccc--ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccce
Q 012712 111 KIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188 (458)
Q Consensus 111 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 188 (458)
+|+| ||++|++++. +.|.+||+.++. ... .+..|...+..++|+|+| +.|+.++ ++.|++||+.+++....
T Consensus 115 ~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECT--TSSEEEEEET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECC--CCCEEEEEeC-CcEEEEECCCCCcceEE--EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe
Confidence 9999 9999999886 899999998772 222 266677889999999999 5666665 46899999998765433
Q ss_pred eeecccCCCCcc------eeecceEEEEECCCCCcEEEEecCCC---------------------------------eEE
Q 012712 189 FTCRPIDDRRNY------MTVVNLNAIAIDPRNANLFAVAGSDE---------------------------------YTR 229 (458)
Q Consensus 189 ~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg---------------------------------~i~ 229 (458)
..........++ .....+..++|+|| +++|++++.|+ .|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 221100000000 00012477999998 67888776655 788
Q ss_pred EEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC------CcEEEEEccCCCCCCCCCCCC
Q 012712 230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND------EFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 230 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~i~i~~~~~~~~~~~~~~~~ 302 (458)
+||+.+ ++.... .....+...+..++| |||+.|++... ..|++||+.++.
T Consensus 267 ~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~--------- 323 (741)
T 2ecf_A 267 VISPAEQAQTQWI-------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ--------- 323 (741)
T ss_dssp EECSSTTCCCEEE-------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------
T ss_pred EEECCCCCceEEe-------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------
Confidence 889877 542110 001135678999999 99998886542 259999987742
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccce-e-eeeEEEEecCCCcEEEEecCCCeEEEEEec-CCeEEE
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-V-TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIR 379 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~ 379 (458)
....+..+... . .+..++| +|||+++++++.||.++||.+. +++ ..
T Consensus 324 -----------------------------~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 324 -----------------------------QRVLAHETSPTWVPLHNSLRF-LDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp -----------------------------EEEEEEEECSSCCCCCSCCEE-CTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred -----------------------------eEEEEEcCCCCcCCcCCceEE-CCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 22222222210 0 1356777 9999999999999988888775 455 77
Q ss_pred EeecCCceeeEE-EecCCCCeEEE-eecCC--cEEEecCCc-cc-ccccccccccEEEEEEecCCcEEEeeecC----Cc
Q 012712 380 VIEADRHVVNCI-EPHPHSTVLAS-SGIES--DIKILTPNA-AD-RATLPTNIEQVCFSIYSADYWWSKSQNFS----CS 449 (458)
Q Consensus 380 ~~~~~~~~v~~~-~~s~~~~~l~s-~~~d~--~i~iw~~~~-~~-~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----~~ 449 (458)
.+..|...+..+ +|+|+++.|+. ++.++ .++||++.. +. ...+.. ...+..++|||||++|+....+ ..
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~ 451 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQ 451 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCe
Confidence 788888888887 59999997754 45555 899999864 33 334443 5668899999999888765433 34
Q ss_pred eEEEE
Q 012712 450 ILLFE 454 (458)
Q Consensus 450 i~~w~ 454 (458)
+.+|+
T Consensus 452 ~~l~~ 456 (741)
T 2ecf_A 452 IELFR 456 (741)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66665
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=7.2e-30 Score=247.94 Aligned_cols=338 Identities=10% Similarity=0.016 Sum_probs=225.1
Q ss_pred CCCCCCCCCeEEEeeC-CC-----cEEEEEcccccccccccccccc-c----cccceEEeeeeeEeecCCCceEEEEEec
Q 012712 3 DASNNNNNKRARTSVD-KA-----LVDVWLRELGQLSTRNFALRRR-A----SEDLVLRLGIYAKLDKHRGCVNTVSFNT 71 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~-d~-----~i~iw~~~~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 71 (458)
.+.++|||++|++++. |+ .|++||+.+|+........... . +.+. ...+....+. ....|.+++|||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~v~~~~~Sp 118 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEE-KARRERQRIA-AMTGIVDYQWSP 118 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------CCEESCCCEECT
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchh-hhhhhhhhhc-cccCcceeEECC
Confidence 4568999999999998 88 8999999988754321100000 0 0000 0000000000 113488999999
Q ss_pred CCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc
Q 012712 72 DGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149 (458)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 149 (458)
||++|++++. +.|++||+.++. ....+ ..|...+..++|+| ||++|++++. +.|.+||+.+++.... ...+
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SP--DG~~la~~~~-~~i~~~d~~~g~~~~~--~~~~ 191 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSP--KGGFVSFIRG-RNLWVIDLASGRQMQL--TADG 191 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECT--TSSEEEEEET-TEEEEEETTTTEEEEC--CCCC
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCC--CCCEEEEEeC-CcEEEEecCCCCEEEe--ccCC
Confidence 9999999886 899999999872 33444 56788899999999 9999999874 6899999987654432 2222
Q ss_pred cc----------------ceEEEEEcCCCCeEEEEecCCC---------------------------------eEEEEeC
Q 012712 150 QG----------------RAHKLAIEPGSPHVFYTCGEDG---------------------------------LVQHFDL 180 (458)
Q Consensus 150 ~~----------------~v~~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~ 180 (458)
.. .+..++|+||| +.|++++.|+ .|++||+
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred ccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 22 14789999999 4566665554 7889999
Q ss_pred CC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-----CCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 181 RT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 181 ~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
.+ ++....... .. +...+..++| || +++|++++. +..|++||+.+++...
T Consensus 271 ~~~~~~~~~~~~------~~--~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-------------- 326 (741)
T 2ecf_A 271 AEQAQTQWIDLG------KE--QDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRV-------------- 326 (741)
T ss_dssp STTCCCEEECCC------SC--SSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEE--------------
T ss_pred CCCCceEEecCC------CC--cceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEE--------------
Confidence 88 765433211 01 3346889999 98 577776543 5679999998875321
Q ss_pred ccccccc-c---ceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712 255 NLIGDEQ-V---GITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (458)
Q Consensus 255 ~~~~~~~-~---~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (458)
+...+. . .+..++|+|||+++++++. +.+.+|.++..
T Consensus 327 -~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~------------------------------------- 368 (741)
T 2ecf_A 327 -LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK------------------------------------- 368 (741)
T ss_dssp -EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-------------------------------------
T ss_pred -EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-------------------------------------
Confidence 111111 1 3468899999998887774 45677765421
Q ss_pred ccCceeecCccceeeeeEE-EEecCCCcEEE-EecCCC--eEEEEEecC-CeEEEEeecCCceeeEEEecCCCCeEEEee
Q 012712 330 RIAPQVYKGHRNCVTVKGV-NFFGPKCEYVV-SGSDCG--RIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSG 404 (458)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~-~~~s~~~~~l~-~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 404 (458)
.. ...+..+... +..+ .| +|+|+.|+ +++.++ .++||++.. ++....+.. ...+..++|+|||++|+...
T Consensus 369 ~~-~~~l~~~~~~--v~~~~~~-s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 369 GK-AAALTHGNWS--VDELLAV-DEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSW 443 (741)
T ss_dssp SC-EEESCCSSSC--EEEEEEE-ETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEE
T ss_pred CC-eeeeeecceE--EEeEeEE-eCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEe
Confidence 12 3444444442 5666 46 99998775 455555 899999874 665667765 55678999999999888764
Q ss_pred cC----CcEEEecCCcc
Q 012712 405 IE----SDIKILTPNAA 417 (458)
Q Consensus 405 ~d----~~i~iw~~~~~ 417 (458)
.+ ..+.+|+..++
T Consensus 444 ~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 444 SNNSTPPQIELFRANGE 460 (741)
T ss_dssp EETTEEEEEEEEETTSC
T ss_pred cCCCCCCeEEEEEcCCC
Confidence 43 46888887654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.97 E-value=4e-30 Score=249.10 Aligned_cols=345 Identities=10% Similarity=0.064 Sum_probs=230.2
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCC---ceEEEEEecCCCEEEEe
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG 79 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~ 79 (458)
++.|+|+|+++++ +.||.|++||+.+|+.. ..+.+|.. .|.+++|||||++|+++
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------VLIEGKKIESLRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------EEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------EEeccccccccccceEEECCCCCEEEEE
Confidence 5679999998876 67999999999988765 23555654 49999999999999998
Q ss_pred cCC---------CeEEEEECCCcceeeee--ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc
Q 012712 80 SDD---------RRVILWDWKTERVKLSF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (458)
Q Consensus 80 ~~d---------~~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 148 (458)
+.+ +.|.+||+.+++. ..+ ...|...+..++|+| ||+.|++++. +.|++|++.+++.... ...
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~--~~~ 152 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRV--VST 152 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEE--ECC
T ss_pred ecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEE--ecC
Confidence 764 7889999998875 222 134555689999999 9999999886 7999999988765443 232
Q ss_pred cccc------------------eEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 149 HQGR------------------AHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 149 ~~~~------------------v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
+... +.+++|+|+|. .|++++ .++.+.+|++...... ....+..+
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 216 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGS---------------IYPTVKPY 216 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSS---------------SSCCCEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCc---------------CCCcceec
Confidence 2222 37899999995 555554 4456777876532211 11136778
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C----CcE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D----EFI 284 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~----~~i 284 (458)
.|.+++ .. ..+..|++||+.+++....+. .......+...+..++|+|||++|++.. . ..|
T Consensus 217 ~~~~~G-~~----~~~~~l~~~d~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 282 (723)
T 1xfd_A 217 HYPKAG-SE----NPSISLHVIGLNGPTHDLEMM---------PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL 282 (723)
T ss_dssp ECCBTT-SC----CCEEEEEEEESSSSCCCEECC---------CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred cCCCCC-CC----CCeeEEEEEECCCCceeEEee---------CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence 888863 32 334589999998765311100 0001112356789999999999887654 2 258
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc-cceee--eeEEEEecCCCcEEEE-
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVT--VKGVNFFGPKCEYVVS- 360 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--i~~~~~~s~~~~~l~~- 360 (458)
++||+.++. ....+..+ ..... ...++| +|||++|+.
T Consensus 283 ~~~d~~~g~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~ 323 (723)
T 1xfd_A 283 TLCDATTGV--------------------------------------CTKKHEDESEAWLHRQNEEPVF-SKDGRKFFFI 323 (723)
T ss_dssp EEEETTTCC--------------------------------------EEEEEEEECSSCCCCCCCCCEE-CTTSCSEEEE
T ss_pred EEEeCCCCc--------------------------------------ceEEEEeccCCEEeccCCCceE-cCCCCeEEEE
Confidence 999987642 12222111 11100 125677 999997775
Q ss_pred -ecCCC------eEEEEE-ecCCe--EEEEeecCCceee-EEEecCCCCeEEEeecC---CcEEEecCCcc---cccccc
Q 012712 361 -GSDCG------RIFIWK-KKGGE--LIRVIEADRHVVN-CIEPHPHSTVLASSGIE---SDIKILTPNAA---DRATLP 423 (458)
Q Consensus 361 -~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d---~~i~iw~~~~~---~~~~~~ 423 (458)
...++ .|++|| ...++ +...+..+...+. .++|+|||+.|+..+.+ +.++||++... +...+.
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 403 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS 403 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence 44566 566677 33333 1455544333444 47999999998766554 78999988643 233343
Q ss_pred c---ccccEEEEEEecCCcEEEee
Q 012712 424 T---NIEQVCFSIYSADYWWSKSQ 444 (458)
Q Consensus 424 ~---~~~~v~~~~~s~d~~~l~s~ 444 (458)
. +...+..++|||||++++..
T Consensus 404 ~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 404 CDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp TTSSSSCCCCEEEECTTSSEEEEE
T ss_pred ccccCCCCeEEEEECCCCCEEEEE
Confidence 3 56668899999999887753
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.97 E-value=1.2e-28 Score=237.84 Aligned_cols=324 Identities=12% Similarity=0.092 Sum_probs=210.4
Q ss_pred CCeEEEeeCCCcEEEEEccccccc-ccccccccc----ccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712 10 NKRARTSVDKALVDVWLRELGQLS-TRNFALRRR----ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
+..+++++.|+ | +||+.+|+.+ ...+.+... ..++.. ...+...|.+++|||| +.++.+ .++.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~--------~~~~~~~v~~~~~spd-~~~~~~-~~~~ 102 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKF--------QTTDAFPSFRTLDAGR-GLVVLF-TQGG 102 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-------------------CCCEEEEETTT-TEEEEE-ETTE
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcc--------ccccccCceeEEECCC-CeEEEE-ECCE
Confidence 56677777788 8 9999999873 321111000 000000 1123367999999999 555555 3589
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-----ccceeeeeccccccc-------
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----RGGVETKLLGKHQGR------- 152 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~------- 152 (458)
|++||+.+++.... ..+...+.+++|+| ||+.|+++ .++.|++|++.+ ++.... ...+...
T Consensus 103 i~~~d~~~~~~~~l--~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 103 LVGFDMLARKVTYL--FDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAV 175 (706)
T ss_dssp EEEEETTTTEEEEE--ECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCC
T ss_pred EEEEECCCCceEEc--cCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccch
Confidence 99999998876443 35677899999999 99999985 679999999987 655432 2222222
Q ss_pred -------eEEEEEcCCCCeEEEEec---------------------------------CCCeEEEEeCCCCCccceeeec
Q 012712 153 -------AHKLAIEPGSPHVFYTCG---------------------------------EDGLVQHFDLRTGAATELFTCR 192 (458)
Q Consensus 153 -------v~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~ 192 (458)
+.++.|+|++ +.|++++ .+..|++||+.+++........
T Consensus 176 ~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred hhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence 4889999999 5666665 3467999999887654332110
Q ss_pred ccCCCCcceeecceEEEEECCCCCcEEEEecCCC-----eEEEEecCCCccCCCccCCCCCCCcCCCccc-cccc---cc
Q 012712 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-GDEQ---VG 263 (458)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ 263 (458)
. +...+.+++|+|+ ++.|++++.++ .|++||+.+++... .+. ..+. ..
T Consensus 255 ------~--~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--------------~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 255 ------P--KEKFLTNLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRFVR--------------TLFVETDKHYVEP 311 (706)
T ss_dssp ------C--TTCEEEEEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCEEE--------------EEEEEECSSCCCC
T ss_pred ------C--CceeEeeEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCceee--------------EEEEccCCCeECc
Confidence 0 2346889999998 67888877665 89999998862111 011 0111 12
Q ss_pred eeEEEeCC--CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712 264 ITGLAFSD--QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (458)
Q Consensus 264 i~~~~~~~--~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
+..++|+| +|++++++. ++.+.+|.++.. ......+..+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-------------------------------------~~~~~~l~~~~ 354 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-------------------------------------GRLIRQVTKGE 354 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETT-------------------------------------SCEEEECCCSS
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECC-------------------------------------CCEEEecCCCC
Confidence 46789999 999888877 446778876521 12233444444
Q ss_pred ceeeeeE-EEEecCCCcEEEEec-CCC----eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC----CcEE
Q 012712 341 NCVTVKG-VNFFGPKCEYVVSGS-DCG----RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE----SDIK 410 (458)
Q Consensus 341 ~~~~i~~-~~~~s~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----~~i~ 410 (458)
.. +.. ++| +|+|+.|+.++ .++ .|+.||+.+++ ...+. |...+.+++|+|||++|+....+ +.|+
T Consensus 355 ~~--v~~~~~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~ 429 (706)
T 2z3z_A 355 WE--VTNFAGF-DPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVT 429 (706)
T ss_dssp SC--EEEEEEE-CTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred eE--EEeeeEE-cCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence 32 555 677 99998876554 444 67777776665 34444 56678999999999988876443 5699
Q ss_pred EecCCccc
Q 012712 411 ILTPNAAD 418 (458)
Q Consensus 411 iw~~~~~~ 418 (458)
+|++.+++
T Consensus 430 l~d~~~~~ 437 (706)
T 2z3z_A 430 VTNIGKGS 437 (706)
T ss_dssp EEESSSCE
T ss_pred EEECCCCe
Confidence 99998876
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.97 E-value=1.8e-28 Score=236.76 Aligned_cols=324 Identities=12% Similarity=0.033 Sum_probs=217.2
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCccee-eeeccCCC-----------------cceeEEEEccCCCCeEEEEEc
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFHSGHN-----------------DNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~-----------------~~i~~~~~~~~~~~~~l~s~~ 125 (458)
+..+.|+ |+.+++++.|+ | +||+.+++.+ ..+ ..|. ..|.+++|+| | ..++.+.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d-~~~~~~~ 99 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAG--R-GLVVLFT 99 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEETT--T-TEEEEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEECC--C-CeEEEEE
Confidence 4557888 66677777777 8 9999998873 222 1222 4699999999 8 5555443
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-----CCccceeeecccCCCC--
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRR-- 198 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~-- 198 (458)
++.|++||+.+++... +..+...+.+++|+|+| +.|+.+ .++.|++||+.+ ++..............
T Consensus 100 -~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 100 -QGGLVGFDMLARKVTY---LFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp -TTEEEEEETTTTEEEE---EECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred -CCEEEEEECCCCceEE---ccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 4999999998765433 34466778899999999 456664 679999999998 7654433211100000
Q ss_pred --cceeecceEEEEECCCCCcEEEEec---------------------------------CCCeEEEEecCCCccCCCcc
Q 012712 199 --NYMTVVNLNAIAIDPRNANLFAVAG---------------------------------SDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 199 --~~~~~~~v~~~~~~p~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~ 243 (458)
.......+.+++|+|| +++|++++ .+..|++||+.+++....
T Consensus 174 ~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-- 250 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-- 250 (706)
T ss_dssp CCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC--
T ss_pred chhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee--
Confidence 0000112578999998 67888776 446799999987653111
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-----cEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (458)
.....+...+..++|+|||+.|++++ +. .|++||+.++..
T Consensus 251 -----------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~----------------------- 296 (706)
T 2z3z_A 251 -----------QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF----------------------- 296 (706)
T ss_dssp -----------CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-----------------------
T ss_pred -----------ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-----------------------
Confidence 11123456789999999999888765 32 699999876411
Q ss_pred cccCCCCCCcccccCceeec-C-ccce-eeeeEEEEecC--CCcEEEEecCCCeEEEEEec-CCeEEEEeecCCceeeE-
Q 012712 318 SAASPSTANTDVRIAPQVYK-G-HRNC-VTVKGVNFFGP--KCEYVVSGSDCGRIFIWKKK-GGELIRVIEADRHVVNC- 390 (458)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~i~~~~~~s~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~- 390 (458)
...+. . +... ..+..++| +| ||+++++++.|+.++||.+. +++.+..+..|...+..
T Consensus 297 ---------------~~~~~~~~~~~~~~~~~~~~~-sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~ 360 (706)
T 2z3z_A 297 ---------------VRTLFVETDKHYVEPLHPLTF-LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNF 360 (706)
T ss_dssp ---------------EEEEEEEECSSCCCCCSCCEE-CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEE
T ss_pred ---------------eeEEEEccCCCeECccCCcee-ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEee
Confidence 11111 1 1110 01355677 99 99999999999999999887 67778888888777876
Q ss_pred EEecCCCCeEEEeec-CC----cEEEecCCcccccccccccccEEEEEEecCCcEEEeeecC----CceEEEEE
Q 012712 391 IEPHPHSTVLASSGI-ES----DIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFS----CSILLFEW 455 (458)
Q Consensus 391 ~~~s~~~~~l~s~~~-d~----~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----~~i~~w~~ 455 (458)
++|+|+++.|+.++. ++ .|..|++.+++...+. +...+.+++|||||++++....+ +.|.+||.
T Consensus 361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 799999998766544 44 6777777777644444 56679999999999988765443 45999974
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=2.7e-28 Score=236.32 Aligned_cols=325 Identities=8% Similarity=-0.020 Sum_probs=221.8
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCc---ceeEEEEccCCCCeEEEEEcCC---------Cc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAAD---------GQ 129 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~d---------g~ 129 (458)
..+.+++|+|||+++++ +.|++|++||+.+++....+ ..|.. .|.+++|+| ||++|++++.+ +.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECC--CCCEEEEEecCccceeecceee
Confidence 34678999999997776 78999999999998876555 55554 499999999 99999998764 77
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC-CCcce-------
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYM------- 201 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~------- 201 (458)
+.+||+.+++.........|...+..++|+|+| +.|+.++. +.|++||+.+++............ ..++.
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 889999887753322233455568899999999 45666654 799999999887655443211000 00000
Q ss_pred eecceEEEEECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 202 TVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
....+.+++|+|| ++.|++++.+ +.+.+|++..... .....+..+.|.++|.. ..
T Consensus 171 ~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~G~~---~~ 226 (723)
T 1xfd_A 171 ILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTG--------------------SIYPTVKPYHYPKAGSE---NP 226 (723)
T ss_dssp TSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSS--------------------SSSCCCEEEECCBTTSC---CC
T ss_pred eccCcceEEECCC-CCEEEEEEECCCccceEEeeccCC--------------------cCCCcceeccCCCCCCC---CC
Confidence 0012378999998 5777776644 5677787653221 01234678888888752 11
Q ss_pred CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc----ceeeeeEEEEecCCCc
Q 012712 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR----NCVTVKGVNFFGPKCE 356 (458)
Q Consensus 281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~s~~~~ 356 (458)
...+++||+.++.. ...+..+. ....+..++| +|||+
T Consensus 227 ~~~l~~~d~~~~~~--------------------------------------~~~l~~~~~~~~~~~~~~~~~~-SpDg~ 267 (723)
T 1xfd_A 227 SISLHVIGLNGPTH--------------------------------------DLEMMPPDDPRMREYYITMVKW-ATSTK 267 (723)
T ss_dssp EEEEEEEESSSSCC--------------------------------------CEECCCCCCGGGSSEEEEEEEE-SSSSE
T ss_pred eeEEEEEECCCCce--------------------------------------eEEeeCCccCCCccceeEEEEE-eCCCe
Confidence 23799999987432 12222210 1124788998 99999
Q ss_pred EEEEecC----CCeEEEEEecCCeEEEEeec-CCcee----eEEEecCCCCeEEEe--ecCC------cEEEec-CCccc
Q 012712 357 YVVSGSD----CGRIFIWKKKGGELIRVIEA-DRHVV----NCIEPHPHSTVLASS--GIES------DIKILT-PNAAD 418 (458)
Q Consensus 357 ~l~~~~~----dg~i~iwd~~~~~~~~~~~~-~~~~v----~~~~~s~~~~~l~s~--~~d~------~i~iw~-~~~~~ 418 (458)
+|++... +..|++||+.+++....+.. +...+ ..++|+|||+.|+.. ..++ .|.+|+ ..+++
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 9876643 36899999999987766644 33444 388999999988754 4566 577788 45555
Q ss_pred ---ccccccccccEEE-EEEecCCcEEEeeecC---CceEEEEE
Q 012712 419 ---RATLPTNIEQVCF-SIYSADYWWSKSQNFS---CSILLFEW 455 (458)
Q Consensus 419 ---~~~~~~~~~~v~~-~~~s~d~~~l~s~~~d---~~i~~w~~ 455 (458)
...+..+...+.. ++|||||++|+..+.+ +.+.||+.
T Consensus 348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 5555544445554 6999999998766555 78999986
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=3.9e-27 Score=205.99 Aligned_cols=288 Identities=14% Similarity=0.115 Sum_probs=196.4
Q ss_pred EEecCCCE-EEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccc-eeee
Q 012712 68 SFNTDGDI-LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGG-VETK 144 (458)
Q Consensus 68 ~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~-~~~~ 144 (458)
.|.+++++ +++++.++.|.+||..+++....+. .+...+ .++|+| +++++++++. ++.|.+||+.+++. ...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~- 78 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA- 78 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE-
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe-
Confidence 45555544 7788889999999999998877763 445566 999999 9987666655 88999999988776 332
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCC-C--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGED-G--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
+..+..+..+++|+|++ .+++++..+ + .|.+||+++++....+.. ...+.+++|+|++..++++
T Consensus 79 -~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~spdg~~l~~~ 145 (331)
T 3u4y_A 79 -IQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------PYDAVGIAISPNGNGLILI 145 (331)
T ss_dssp -EEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------CTTEEEEEECTTSSCEEEE
T ss_pred -cccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------CCCccceEECCCCCEEEEE
Confidence 44455555559999999 455655555 3 899999999887665542 2246899999985445555
Q ss_pred ecCCCe-EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCC
Q 012712 222 AGSDEY-TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 222 ~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~ 298 (458)
...++. |.+|++......... . .... .....+..++|+|+|++++... ++.|.+||+.++...
T Consensus 146 ~~~~~~~i~~~~~~~~g~~~~~---------~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~--- 211 (331)
T 3u4y_A 146 DRSSANTVRRFKIDADGVLFDT---------G-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI--- 211 (331)
T ss_dssp EETTTTEEEEEEECTTCCEEEE---------E-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---
T ss_pred ecCCCceEEEEEECCCCcEeec---------C-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---
Confidence 566678 999998754311000 0 0011 1234578999999998665544 457999998764210
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL 377 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 377 (458)
.....+..+. .+..++| +|||++|+.++ .++.|.+||+.+++.
T Consensus 212 --------------------------------~~~~~~~~~~---~~~~~~~-spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 212 --------------------------------TLLNAVGTNN---LPGTIVV-SRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp --------------------------------EEEEEEECSS---CCCCEEE-CTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred --------------------------------ceeeeccCCC---CCceEEE-CCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 0033333332 2577888 99999776554 578899999998877
Q ss_pred --EEEeecC----Cce---eeEEEecCCCCeEEEee-cCCcEEEecCCcccccccc
Q 012712 378 --IRVIEAD----RHV---VNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLP 423 (458)
Q Consensus 378 --~~~~~~~----~~~---v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~ 423 (458)
+..+..+ ... ...++|+||+++|++++ .++.|.+|++.......+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 311 (331)
T 3u4y_A 256 SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVA 311 (331)
T ss_dssp EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECT
T ss_pred eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccccee
Confidence 4444322 222 24589999999886554 4679999999876554443
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=1e-27 Score=210.85 Aligned_cols=310 Identities=10% Similarity=0.090 Sum_probs=196.9
Q ss_pred EEEEecCCCeEEEEECC-CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-CcEEEeecc--cccceeeeeccccc
Q 012712 75 ILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQIL--ERGGVETKLLGKHQ 150 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-g~i~vw~~~--~~~~~~~~~~~~~~ 150 (458)
.+++++.|+.|++|+++ +++........+...+.+++|+| ++++|++++.+ +.|.+|++. ++.......+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 44555789999999985 33221111135777899999999 99988888876 999999997 44433222233333
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTR 229 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~ 229 (458)
.+..++|+|++..+++++..++.|.+||+..+.......... ....+.+++|+|+ ++++++++ .++.|+
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--------GLDGCHSANISPD-NRTLWVPALKQDRIC 154 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------CCTTBCCCEECTT-SSEEEEEEGGGTEEE
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--------CCCCceEEEECCC-CCEEEEecCCCCEEE
Confidence 788999999995555556668999999995332222211111 2224788999998 55666555 899999
Q ss_pred EEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccc
Q 012712 230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (458)
Q Consensus 230 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~ 306 (458)
+||+.+ ++..... ...........+..++|+|+++++++++ ++.+.+|++.........
T Consensus 155 ~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~-------- 216 (343)
T 1ri6_A 155 LFTVSDDGHLVAQD----------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-------- 216 (343)
T ss_dssp EEEECTTSCEEEEE----------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--------
T ss_pred EEEecCCCceeeec----------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--------
Confidence 999986 4321000 0011111234678899999999765544 557999998642110000
Q ss_pred ccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEec--C--CeEEEE
Q 012712 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKK--G--GELIRV 380 (458)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~--~--~~~~~~ 380 (458)
......+. ++.....+..++| +|+|++|+ ++..++.|++||+. + .+.+..
T Consensus 217 -----------------------~~~~~~~~~~~~~~~~~~~i~~-s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 217 -----------------------VQTLDMMPENFSDTRWAADIHI-TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp -----------------------EEEEECSCTTCCSCCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred -----------------------EeeccccCccccccCCccceEE-CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 00001011 1111223667888 99998887 45578999999998 2 345555
Q ss_pred eecCCceeeEEEecCCCCeEEEee-cCCcEEEecCC--ccccccc--ccccccEEEEEEecCCc
Q 012712 381 IEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN--AADRATL--PTNIEQVCFSIYSADYW 439 (458)
Q Consensus 381 ~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~--~~~~~~~--~~~~~~v~~~~~s~d~~ 439 (458)
+..+.. +..++|+|+|++|++++ .++.|.+|+++ +++...+ ........+++|.|+.+
T Consensus 273 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 273 QPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred ecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 655554 88999999999888877 68999999554 5533222 11223466777777654
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.8e-26 Score=201.86 Aligned_cols=309 Identities=11% Similarity=0.056 Sum_probs=200.2
Q ss_pred CCCCCCCCe-EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-
Q 012712 4 ASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD- 81 (458)
Q Consensus 4 ~~~~~~~~~-l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~- 81 (458)
+.|++++.+ +++++.++.|++||.++++.... +..+...+ +++|+|+|++|++++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~-~~~~s~dg~~l~~~~~~ 60 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ---------------------ITLGYDFV-DTAITSDCSNVVVTSDF 60 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE---------------------EECCCCEE-EEEECSSSCEEEEEEST
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee---------------------EEccCCcc-eEEEcCCCCEEEEEeCC
Confidence 455555555 77888899999999998887632 44455666 9999999996666554
Q ss_pred CCeEEEEECCCcce-eeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---cEEEeecccccceeeeeccccccceEEEE
Q 012712 82 DRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLLGKHQGRAHKLA 157 (458)
Q Consensus 82 d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~v~~~~ 157 (458)
++.|.+||+.+++. ...+ ..+..+..+++|+| ++++|+++..++ .|.+||+.+++.... +. ......+++
T Consensus 61 ~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~~~~~~~ 134 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAI-QEGQSSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFIST--IP-IPYDAVGIA 134 (331)
T ss_dssp TCEEEEEECSSSSCEEEEE-EECSSCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEE--EE-CCTTEEEEE
T ss_pred CCeEEEEECCCCceeEEec-ccCCCCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEE--EE-CCCCccceE
Confidence 88999999998887 4444 45556655599999 999999655553 899999988776554 33 234568999
Q ss_pred EcCCCCeEEEEecCCCe-EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 158 IEPGSPHVFYTCGEDGL-VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 158 ~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
|+|++..++++...++. |.+|++.............. . ....+..++|+|++..+++++..++.|.+||+.++
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~-----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-S-----GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-C-----SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-c-----CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999666666677688 99999986543322211100 0 22346899999984335566667899999999876
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
+.... ..... ....+..++|+|+|++++.+. ++.|.+||+.+++..
T Consensus 209 ~~~~~------------~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~------------------- 256 (331)
T 3u4y_A 209 ENITL------------LNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS------------------- 256 (331)
T ss_dssp TSCEE------------EEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE-------------------
T ss_pred cccce------------eeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee-------------------
Confidence 53100 01111 235678899999999776655 347999998764220
Q ss_pred CCccccCCCCCCcccccCceeecCc----cce-eeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCcee
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGH----RNC-VTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVV 388 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v 388 (458)
....+..+ ... .....++| +|||++|++++ .++.|.+||+.... +..+.+....-
T Consensus 257 -----------------~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g 317 (331)
T 3u4y_A 257 -----------------FVKSFGHGLLIDPRPLFGANQMAL-NKTETKLFISANISRELKVFTISGKV-VGYVAGIEANG 317 (331)
T ss_dssp -----------------EEEEEECCCCCCCGGGTTCCCEEE-CTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBS
T ss_pred -----------------eecccccccccCCCCcccccceEE-CCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccC
Confidence 01111100 110 01245777 99999886554 56799999996543 33343333222
Q ss_pred eEEEecCCC
Q 012712 389 NCIEPHPHS 397 (458)
Q Consensus 389 ~~~~~s~~~ 397 (458)
....++|++
T Consensus 318 ~~~~~~~~~ 326 (331)
T 3u4y_A 318 GIAICHPDK 326 (331)
T ss_dssp CEEECCCC-
T ss_pred CeEEECCcc
Confidence 223344443
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=1.9e-26 Score=202.80 Aligned_cols=307 Identities=10% Similarity=0.118 Sum_probs=194.7
Q ss_pred eEEEeeCCCcEEEEEccc-cccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC-CeEEEEE
Q 012712 12 RARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-RRVILWD 89 (458)
Q Consensus 12 ~l~~~~~d~~i~iw~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd 89 (458)
++++++.|+.|++|++.. ++.. .... ..|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALT-------------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEE-------------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEE-------------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 344557899999999963 3211 1122 2477789999999999988888876 8999999
Q ss_pred CC--Ccce--eeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeeccccccee-eeeccccccceEEEEEcCCCC
Q 012712 90 WK--TERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSP 163 (458)
Q Consensus 90 ~~--~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 163 (458)
++ +++. +..+ ..+ ..+..++|+| ++++|++++. ++.|.+|++..+.... ...+. ....+.+++|+|++.
T Consensus 67 ~~~~~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 67 IAPDDGALTFAAES-ALP-GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR 141 (343)
T ss_dssp ECTTTCCEEEEEEE-ECS-SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS
T ss_pred ecCCCCceeecccc-ccC-CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC
Confidence 97 5543 2333 223 3789999999 9998876654 8889999995222111 11133 334588999999995
Q ss_pred eEEEEecCCCeEEEEeCCC-CCcccee--eecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC--Ccc
Q 012712 164 HVFYTCGEDGLVQHFDLRT-GAATELF--TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKW 238 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~ 238 (458)
.+++++..++.|.+||+.+ ++..... ..... ....+..++|+|++..+++++..++.|.+|++.. ++.
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV-------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS-------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccccC-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 5544444889999999987 5433221 11100 1225778999998433445556889999999964 221
Q ss_pred CCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 239 DGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
..... ...... .....+..++|+|+|++|++.. ++.+.+|++......
T Consensus 215 ~~~~~---------~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~------------------- 266 (343)
T 1ri6_A 215 ECVQT---------LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV------------------- 266 (343)
T ss_dssp EEEEE---------EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-------------------
T ss_pred EEEee---------ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-------------------
Confidence 00000 000000 1134567899999998776443 558999998731100
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEec--CCe--EEEEeecCCceee
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK--GGE--LIRVIEADRHVVN 389 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~v~ 389 (458)
......+..+.. +..++| +|+|++|++++ .++.|.+|++. +++ .+..+... ....
T Consensus 267 ---------------~~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~ 326 (343)
T 1ri6_A 267 ---------------LSKEGFQPTETQ---PRGFNV-DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPM 326 (343)
T ss_dssp ---------------EEEEEEEECSSS---CCCEEE-CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCC
T ss_pred ---------------eEEeeeecCCCc---cceEEE-CCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCe
Confidence 112222332222 567888 99999888777 67999999664 554 34444432 3466
Q ss_pred EEEecCCCC
Q 012712 390 CIEPHPHST 398 (458)
Q Consensus 390 ~~~~s~~~~ 398 (458)
+++|.|+.+
T Consensus 327 ~i~~~~~~~ 335 (343)
T 1ri6_A 327 WVVVNAHEG 335 (343)
T ss_dssp EEEEEEEC-
T ss_pred eEEEEcccC
Confidence 778876544
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=8.3e-27 Score=200.61 Aligned_cols=257 Identities=12% Similarity=0.076 Sum_probs=176.2
Q ss_pred EeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC-c
Q 012712 15 TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-E 93 (458)
Q Consensus 15 ~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~ 93 (458)
.++.|+.|++||+.+++.. .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----------------------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP 73 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----------------------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC
T ss_pred CCCcceeEEEEeCCCCcee----------------------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC
Confidence 3467899999999977644 3456889999999999999999987 78999999998 7
Q ss_pred ceeeeeccCC-CcceeEEEEccCCCCeEEEEEc--CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712 94 RVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (458)
Q Consensus 94 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (458)
+..... ..+ ...+.+++|+| ++++|++++ .++..++|.+....... ..+..+ ..+..++|+|++..+++++.
T Consensus 74 ~~~~~~-~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 74 SPEKVD-TGFATICNNDHGISP--DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp SCEECC-CTTCCCBCSCCEECT--TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEE
T ss_pred CceEec-cccccccccceEECC--CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEEC
Confidence 765544 344 47889999999 999999988 34566666654322211 113333 34888999999966666888
Q ss_pred CCCeEEEEeCCC--CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe-cCCCeEEEEecCCCccCCCccCCCC
Q 012712 171 EDGLVQHFDLRT--GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTRLYDIRKYKWDGSTDFGQP 247 (458)
Q Consensus 171 ~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (458)
.++.+++|+++. ++.. .+.. +...+.+++|+|+ +..++.+ ..++.+++|++....
T Consensus 149 ~~~~~~l~~~~~~~~~~~-~~~~----------~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~---------- 206 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVET-RLTH----------GEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDG---------- 206 (297)
T ss_dssp ETTEEEEEEEETTTCCEE-ECCC----------SSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTS----------
T ss_pred CCCceEEEEEECCCCcce-Eccc----------CCCccccceECCC-CCEEEEEecCCCCccEEEECCCC----------
Confidence 899999998643 3221 1110 2235677888887 4544443 356777777664211
Q ss_pred CCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (458)
T Consensus 207 -------------------------------------------------------------------------------- 206 (297)
T 2ojh_A 207 -------------------------------------------------------------------------------- 206 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-----------CeEEEEEecCCeE--EEEeecCCceeeEEEec
Q 012712 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----------GRIFIWKKKGGEL--IRVIEADRHVVNCIEPH 394 (458)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s 394 (458)
.....+..+.. .+..++| +|+|++|++++.+ +.|++||+.+++. +..+.+|...+..++|+
T Consensus 207 ---~~~~~~~~~~~--~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 207 ---SSVERITDSAY--GDWFPHP-SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp ---SCEEECCCCSE--EEEEEEE-CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred ---CCcEEEecCCc--ccCCeEE-CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 00111112222 2556666 7777777766654 5799999988765 44455788889999999
Q ss_pred CCCCeEEEeecCC
Q 012712 395 PHSTVLASSGIES 407 (458)
Q Consensus 395 ~~~~~l~s~~~d~ 407 (458)
|++++|++++.+.
T Consensus 281 pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEECC
T ss_pred CCCCEEEEEEecc
Confidence 9999998887654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=2.1e-26 Score=202.03 Aligned_cols=279 Identities=11% Similarity=0.025 Sum_probs=198.6
Q ss_pred CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCC-ceEEEEEecCCCEE-EEecCCCeEEE
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRG-CVNTVSFNTDGDIL-ISGSDDRRVIL 87 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~s~~~~~l-~s~~~d~~i~i 87 (458)
.+|++++.++.|++||..+++.+.. +. ++.. .+..++|+|+|+++ ++++.++.|.+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 60 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKV---------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEE---------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEE---------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEE
Confidence 4789999999999999998876632 33 2222 47889999999765 56667889999
Q ss_pred EECCCcceeeeeccCC----CcceeEEEEccCCCCeEEEEEc------------CCCcEEEeecccccceeeeecccccc
Q 012712 88 WDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA------------ADGQVRHAQILERGGVETKLLGKHQG 151 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~s~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~ 151 (458)
||+.+++.+..+..++ ...+..++|+| ++++|++++ .++.|.+||+.+++.... +. ...
T Consensus 61 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~ 135 (337)
T 1pby_B 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--FE-APR 135 (337)
T ss_dssp EETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EE-CCS
T ss_pred EECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECCCCcEEEE--Ee-CCC
Confidence 9999988876663332 22678899999 999888886 579999999987765543 22 234
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-----
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE----- 226 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----- 226 (458)
.+.+++|+|++. .++++ ++.|.+||+++++....+..... . ..+.|+|++..+++++..++
T Consensus 136 ~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--------~---~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 136 QITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSW--------E---AETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp SCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTT--------T---TTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred CcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeecccc--------C---CCceeCCCccEEeeeccCCCceeee
Confidence 578899999995 45555 68899999998876655432110 0 12267887433333333333
Q ss_pred ------------------eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 227 ------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 227 ------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
.|.+||+.+++.. . .....+...+.+++|+|+|++++++ ++.|++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~-------------~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d 266 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-M-------------REVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFD 266 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E-------------EEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEE
T ss_pred eeccccccccccccccccceEEEeCCCCCce-E-------------eecCCCCCceeeEEECCCCCEEEEe-CCeEEEEE
Confidence 4689998876532 1 1112234567889999999998888 67899999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
+.++ +....+.... .+.+++| +|+|++|++++.++.|+
T Consensus 267 ~~~~--------------------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 267 LEKN--------------------------------------ASIKRVPLPH---SYYSVNV-STDGSTVWLGGALGDLA 304 (337)
T ss_dssp TTTT--------------------------------------EEEEEEECSS---CCCEEEE-CTTSCEEEEESBSSEEE
T ss_pred CCCC--------------------------------------cCcceecCCC---ceeeEEE-CCCCCEEEEEcCCCcEE
Confidence 8763 2223333222 2578888 99999999999999999
Q ss_pred EEEecCCeEEEEeecCCc
Q 012712 369 IWKKKGGELIRVIEADRH 386 (458)
Q Consensus 369 iwd~~~~~~~~~~~~~~~ 386 (458)
+||+.+++.+..+..+..
T Consensus 305 v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 305 AYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEETTTCCEEEEEECGGG
T ss_pred EEECcCCcEEEEEEcCCC
Confidence 999999999888876543
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=4.5e-26 Score=196.02 Aligned_cols=255 Identities=12% Similarity=0.131 Sum_probs=183.2
Q ss_pred EecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-ccceeeeecccc-ccceEE
Q 012712 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKH-QGRAHK 155 (458)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~-~~~v~~ 155 (458)
+++.|+.|++||+.+++.... ..|...|.+++|+| ++++|++++ ++.|.+||+.+ ++.... ...+ ...+.+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~--~~~~~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVV--WQTPELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEE--EEESSCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCCceeee--ccCCcceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccc
Confidence 456789999999998876543 36888999999999 999999987 78999999988 655433 3344 467899
Q ss_pred EEEcCCCCeEEEEec--CCCeEEEE--eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712 156 LAIEPGSPHVFYTCG--EDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~--~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
++|+|++ ..|++++ .++...+| ++.+++. ..+. ....+..++|+|++..+++++..++.+++|
T Consensus 90 ~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~-----------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 90 HGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP-RLMT-----------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp CEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC-EECC-----------SSSSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred eEECCCC-CEEEEEEeCCCCcceEEEEECCCCce-EEee-----------cCCCccceEECCCCCEEEEEECCCCceEEE
Confidence 9999999 5667766 33444444 5454442 2221 112367788999843344477788888888
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
++..... ..
T Consensus 157 ~~~~~~~------------------------~~----------------------------------------------- 165 (297)
T 2ojh_A 157 SMDIDSG------------------------VE----------------------------------------------- 165 (297)
T ss_dssp EEETTTC------------------------CE-----------------------------------------------
T ss_pred EEECCCC------------------------cc-----------------------------------------------
Confidence 7643210 00
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEec-CCeEEEEeecCCceee
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK-GGELIRVIEADRHVVN 389 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~ 389 (458)
..+..+.. .+.+++| +|+|++|+.++ .++.+++|++. .+..+..+..|...+.
T Consensus 166 ----------------------~~~~~~~~--~~~~~~~-s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 220 (297)
T 2ojh_A 166 ----------------------TRLTHGEG--RNDGPDY-SPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW 220 (297)
T ss_dssp ----------------------EECCCSSS--CEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE
T ss_pred ----------------------eEcccCCC--ccccceE-CCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC
Confidence 01111111 2677787 99999887665 58899999987 5667778888888999
Q ss_pred EEEecCCCCeEEEeecC-----------CcEEEecCCccccccc---ccccccEEEEEEecCCcEEEeeecCC
Q 012712 390 CIEPHPHSTVLASSGIE-----------SDIKILTPNAADRATL---PTNIEQVCFSIYSADYWWSKSQNFSC 448 (458)
Q Consensus 390 ~~~~s~~~~~l~s~~~d-----------~~i~iw~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~s~~~d~ 448 (458)
.++|+|++++|++++.+ +.|.+|++.+++...+ ..|...+..++|+|||++|++++.|.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999988766 5699999998765433 35677899999999999998877664
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=2.8e-25 Score=196.12 Aligned_cols=278 Identities=10% Similarity=0.063 Sum_probs=202.6
Q ss_pred CCCceEEEEEecCCCEEEEecC-------CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEE
Q 012712 60 HRGCVNTVSFNTDGDILISGSD-------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVR 131 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~ 131 (458)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+. ....+..++|+| +++.++ +...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~--dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN--TTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET--TTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC--CCCEEEEEecCCCEEE
Confidence 4466889999999998887764 5689999999998877763 334578899999 988554 556689999
Q ss_pred Eeecccccceeeeeccccc-------cceEEEEEcCCCCeEEEEe-cCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 132 HAQILERGGVETKLLGKHQ-------GRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
+||..+++........... ..+.+++|+|++..++++. +.++.|.+||+++++....+.. ..
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----------~~ 184 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----------TG 184 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------CC
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC----------CC
Confidence 9999888766553222111 1268899999996555554 3578999999998877655541 11
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (458)
..+.+++|+|+ ++++++++.++.|.+||..+++.. ..+.....
T Consensus 185 ~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~-------------------------~~~~~~~~----------- 227 (353)
T 3vgz_A 185 KMSTGLALDSE-GKRLYTTNADGELITIDTADNKIL-------------------------SRKKLLDD----------- 227 (353)
T ss_dssp TTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEE-------------------------EEEECCCS-----------
T ss_pred CccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEE-------------------------EEEEcCCC-----------
Confidence 23678899998 678888888999999998765421 11110000
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
++.. .+.+++| +|+|+++++++.
T Consensus 228 ------------------------------------------------------~~~~--~~~~~~~-s~dg~~l~~~~~ 250 (353)
T 3vgz_A 228 ------------------------------------------------------GKEH--FFINISL-DTARQRAFITDS 250 (353)
T ss_dssp ------------------------------------------------------SSCC--CEEEEEE-ETTTTEEEEEES
T ss_pred ------------------------------------------------------CCCc--ccceEEE-CCCCCEEEEEeC
Confidence 0111 2567887 999997776654
Q ss_pred -CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCCcccccccccccccEEEEEEecCCcEE
Q 012712 364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWS 441 (458)
Q Consensus 364 -dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 441 (458)
++.|.+||+.+++.+..+.... ...++|+|+++++++++ .++.|.+||+.+++..........+.+++|+|||++|
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTL 328 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEE
T ss_pred CCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEE
Confidence 4999999999999888887544 36799999999665554 6899999999988776555555678999999999877
Q ss_pred EeeecC
Q 012712 442 KSQNFS 447 (458)
Q Consensus 442 ~s~~~d 447 (458)
+.+..+
T Consensus 329 ~v~~~~ 334 (353)
T 3vgz_A 329 YVSVKQ 334 (353)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 665554
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=6e-26 Score=199.08 Aligned_cols=271 Identities=8% Similarity=0.039 Sum_probs=194.0
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCc-ceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeeccc---
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGK--- 148 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~--- 148 (458)
++|++++.++.|.+||+.+++.+..+..++.. .+..++|+| +++.+ +++..++.|.+||+.+++.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47889999999999999999887776333322 488999999 99765 556668899999998887665433322
Q ss_pred cccceEEEEEcCCCCeEEEEec------------CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCG------------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
|...+..++|+|++. .++++. .++.|.+||+.+++....+.. ...+.+++|+|+ +
T Consensus 80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g 146 (337)
T 1pby_B 80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARD-G 146 (337)
T ss_dssp EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTT-S
T ss_pred ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCC-C
Confidence 233677899999994 556654 579999999998876655542 224678899998 5
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-C-------------
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E------------- 282 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~------------- 282 (458)
++++++ ++.|++||+.+++....... . . ....+.|+|+++.++.... +
T Consensus 147 ~~l~~~--~~~i~~~d~~~~~~~~~~~~--------------~-~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPEAGTLVEDKPI--------------Q-S-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp SCEEEE--SSSEEEEETTTTEEEEEECS--------------T-T-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred CEEEEe--CCeEEEEECCCCcEeeeeec--------------c-c-cCCCceeCCCccEEeeeccCCCceeeeeeccccc
Confidence 667666 67899999988764322111 0 0 0112367888876655442 2
Q ss_pred -----------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 283 -----------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 283 -----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
.+.+||+.+++. . ...+..+.. .+.+++|
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~------------------------------------~-~~~~~~~~~--~~~~~~~- 248 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEM------------------------------------A-MREVRIMDV--FYFSTAV- 248 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCE------------------------------------E-EEEEEECSS--CEEEEEE-
T ss_pred cccccccccccceEEEeCCCCCc------------------------------------e-EeecCCCCC--ceeeEEE-
Confidence 246677665311 0 111222222 3667888
Q ss_pred cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+|+|++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++..
T Consensus 249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 9999999988 799999999999988887644 45789999999999999999999999999887654
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.95 E-value=5.6e-26 Score=214.04 Aligned_cols=274 Identities=14% Similarity=0.068 Sum_probs=193.1
Q ss_pred CCCceEEEEEecCCCEEEEecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeec
Q 012712 60 HRGCVNTVSFNTDGDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQI 135 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~ 135 (458)
+..+|.+++|+|||++||+++. |++++||++++++. ..+...+...+..++|+| | +.+++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEEE
Confidence 3568999999999999999887 99999999866655 444233336899999999 8 77777765 455677666
Q ss_pred cc--ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 136 LE--RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 136 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
.. ...... +.... .+...+|+|++..++++.+.++.+.+||+.+++...... .. ..+++|+|
T Consensus 96 ~~~~~g~~~~--l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------~~--~~~~~~sp 159 (582)
T 3o4h_A 96 NTSRPGEEQR--LEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------LP--GFGFVSDI 159 (582)
T ss_dssp ETTSTTCCEE--CTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------ES--SCEEEEEE
T ss_pred eccCCCcccc--ccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------CC--CceEEECC
Confidence 44 222221 22222 234568888886555555555556699999886554432 11 17889999
Q ss_pred CCCcEEEEecCC----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC--cEEE
Q 012712 214 RNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYL 286 (458)
Q Consensus 214 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--~i~i 286 (458)
| ++++++++.+ +.|++||+.+++. .....+...+..++|+|||+.|+++. ++ .|++
T Consensus 160 D-G~~la~~~~~~~~~~~i~~~d~~~g~~----------------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 160 R-GDLIAGLGFFGGGRVSLFTSNLSSGGL----------------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp E-TTEEEEEEEEETTEEEEEEEETTTCCC----------------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred C-CCEEEEEEEcCCCCeEEEEEcCCCCCc----------------eEeecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence 8 6888877766 7899999987652 12344567789999999999999665 44 5999
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce------eeeeEEEEecCCCcEEEE
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC------VTVKGVNFFGPKCEYVVS 360 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~s~~~~~l~~ 360 (458)
||+.++... .+.++... ......+| +|||+++++
T Consensus 223 ~d~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~ 262 (582)
T 3o4h_A 223 VDPRDGSVE---------------------------------------DLELPSKDFSSYRPTAITWLGY-LPDGRLAVV 262 (582)
T ss_dssp ECTTTCCEE---------------------------------------ECCCSCSHHHHHCCSEEEEEEE-CTTSCEEEE
T ss_pred EcCCCCcEE---------------------------------------EccCCCcChhhhhhccccceeE-cCCCcEEEE
Confidence 998874321 22222221 01123337 999999999
Q ss_pred ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCc
Q 012712 361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNA 416 (458)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~ 416 (458)
++.++++++|++ ++.+. .+.+.+.+++|+ +++++++++.+. .+.+|+..+
T Consensus 263 ~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 263 ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999999999 66554 344678999999 999999888774 477888765
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=214.92 Aligned_cols=327 Identities=8% Similarity=-0.050 Sum_probs=213.2
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCC---ceEEEEEecCCCEEEEe
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG 79 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~ 79 (458)
++.++|++++++++ .|+.|++||+.+|+... .+.+|.. .|.+++|||||++||++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~---------------------~~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT---------------------ILSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE---------------------EECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE---------------------EEccccccccceeeEEECCCCCeEEEE
Confidence 45688999655554 69999999999887542 2334433 48999999999999988
Q ss_pred cC---------CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712 80 SD---------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (458)
Q Consensus 80 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 150 (458)
+. ++.|++||+.+++.+... .....+..++|+| ||+.|+++. ++.|++|++.+++.... ...++.
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~ 151 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRE 151 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBT
T ss_pred ecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCc
Confidence 76 789999999988763111 1125688999999 999999986 68999999987765432 122332
Q ss_pred cce-----------------EEEEEcCCCCeEEEEecCCC----------------------------------eEEEEe
Q 012712 151 GRA-----------------HKLAIEPGSPHVFYTCGEDG----------------------------------LVQHFD 179 (458)
Q Consensus 151 ~~v-----------------~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iwd 179 (458)
..+ .+++|+||| +.|++++.|. .|++||
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 222 489999999 5667665442 788999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----CeEEEEe----cCCCccCCCccCCCCCCCc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYD----IRKYKWDGSTDFGQPADYF 251 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~ 251 (458)
+.+++....+.........+ +...+..++|+|| +.++++.... ..|.+|| +.+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------------ 295 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIAS--SDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCP------------ 295 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHT--SCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECC------------
T ss_pred CCCCCccceeEccCCccCCC--CcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceE------------
Confidence 98876431111100000001 3346889999998 6777764322 2488899 6665422
Q ss_pred CCCccc----ccccccee-----EEEeCCCCcEEEE--ec-CC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712 252 CPPNLI----GDEQVGIT-----GLAFSDQSELLVS--YN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (458)
Q Consensus 252 ~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~-~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (458)
.+. ..+...+. .++|+|||+.|+. .. ++ .|++|++.++.
T Consensus 296 ---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~------------------------ 348 (719)
T 1z68_A 296 ---KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN------------------------ 348 (719)
T ss_dssp ---GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT------------------------
T ss_pred ---EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc------------------------
Confidence 122 23444555 7899999986554 32 33 47777765531
Q ss_pred cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-----CeEEEEEecC--Ce-EEEEeec----CC
Q 012712 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKG--GE-LIRVIEA----DR 385 (458)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~~~~~----~~ 385 (458)
...+..+.. .+..+.+ . +++.|+..+.+ +..++|.+.. +. ....+.. |.
T Consensus 349 ---------------~~~lt~~~~--~v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~ 409 (719)
T 1z68_A 349 ---------------AIQITSGKW--EAINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER 409 (719)
T ss_dssp ---------------CEECSCSSS--CEEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred ---------------eEecccCce--EEEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence 233333332 2566777 5 77766655544 8888998764 32 2234432 55
Q ss_pred ceeeEEEecCCCCeEEEe-ecC--CcEEEecCCcccc
Q 012712 386 HVVNCIEPHPHSTVLASS-GIE--SDIKILTPNAADR 419 (458)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~-~~d--~~i~iw~~~~~~~ 419 (458)
..+..+.|+|++++++.. +.+ ..+.+|++.+++.
T Consensus 410 ~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 410 CQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp BCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 678889999999987743 333 4688999877653
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=2.7e-24 Score=189.19 Aligned_cols=289 Identities=10% Similarity=0.087 Sum_probs=183.1
Q ss_pred CCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEE
Q 012712 81 DDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHK 155 (458)
Q Consensus 81 ~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~ 155 (458)
.++.|.+|+++ +++........+...+..++|+| +++ |++++. ++.|.+|++.++.......+..+...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 35567777665 45443322234556788899999 999 555544 68999999976554333334456778899
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC--cceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
++|+|++..++++...++.|.+|++........+......... .......+.+++|+|++ +++++...++.|++|++
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEE
Confidence 9999999544444447899999999643222222111100000 00012247889999984 57777778899999999
Q ss_pred C-CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 234 R-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
. +++.... ..........+..++|+|+|+++++.+ ++.+.+|++......
T Consensus 170 ~~~g~~~~~------------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~--------------- 222 (347)
T 3hfq_A 170 SDAGQLSEQ------------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA--------------- 222 (347)
T ss_dssp CTTSCEEEE------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE---------------
T ss_pred CCCCcEEEe------------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc---------------
Confidence 8 3321100 001111223567899999999666644 457999998741100
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCcc----ceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecC---CeEEEEee
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHR----NCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG---GELIRVIE 382 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~---~~~~~~~~ 382 (458)
......+.... ....+..++| +|||++|+ +...++.|.+|++.. .+.+..+.
T Consensus 223 -------------------~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~ 282 (347)
T 3hfq_A 223 -------------------FTQLGIVKTIPADYTAHNGAAAIRL-SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS 282 (347)
T ss_dssp -------------------EEEEEEEESSCTTCCSCCEEEEEEE-CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred -------------------eEEeeeeeecCCCCCCCCcceeEEE-CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence 00011111111 0123678888 99999885 555689999999962 25566666
Q ss_pred cCCceeeEEEecCCCCeEEEeec-CCcEEEe--cCCccccc
Q 012712 383 ADRHVVNCIEPHPHSTVLASSGI-ESDIKIL--TPNAADRA 420 (458)
Q Consensus 383 ~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iw--~~~~~~~~ 420 (458)
.+...+..++|+|||++|++++. ++.|.+| +..++++.
T Consensus 283 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 283 TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 66677899999999998888775 4899999 55556544
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=1.7e-24 Score=190.79 Aligned_cols=287 Identities=10% Similarity=0.007 Sum_probs=195.9
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEE-EEecC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDIL-ISGSD 81 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~ 81 (458)
+.+++++.++++++.++.|++||..+++.+.. +..+. ..+..++|+|+|+++ +++..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS---------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE---------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEE---------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 46788899999999999999999998876532 33332 257789999999865 45567
Q ss_pred CCeEEEEECCCcceeeeeccCC-----CcceeEEEEccCCCCeEEEEEcCC------------CcEEEeecccccceeee
Q 012712 82 DRRVILWDWKTERVKLSFHSGH-----NDNVFQAKIMPFTDDRSIVTCAAD------------GQVRHAQILERGGVETK 144 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~s~~~d------------g~i~vw~~~~~~~~~~~ 144 (458)
++.|.+||+.+++....+...+ ...+..++|+| ++++|++++.+ +.|.+||+.+++.....
T Consensus 64 ~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 8999999999988776663233 23478999999 99999988865 89999999875543221
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC--------------CcceeecceEEEE
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------------RNYMTVVNLNAIA 210 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~ 210 (458)
....+...+.+++|+|++. + ++++. .|.+||+.+++....+........ ...........++
T Consensus 142 ~~~~~~~~~~~~~~s~dg~-l-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFPMPRQVYLMRAADDGS-L-YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEECCSSCCCEEECTTSC-E-EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eeccCCCcccceeECCCCc-E-EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 1222344688999999994 4 44443 499999999887665542210000 0000011345567
Q ss_pred ECCCCC----------cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEe
Q 012712 211 IDPRNA----------NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSY 279 (458)
Q Consensus 211 ~~p~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 279 (458)
+++++. .++.....++.+.+++... ....+..++|+| ++++++++
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~sp~dg~~l~~~ 273 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------------------------LTELYFTGLRSPKDPNQIYGV 273 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEE------------------------CSSCEEEEEECSSCTTEEEEE
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEeccccc------------------------CCCcceeeEecCCCCCEEEEE
Confidence 765421 1122333445555555422 234678999999 99998888
Q ss_pred cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712 280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (458)
Q Consensus 280 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~ 359 (458)
++.|.+||+.++ +....+.... .+.+++| +|+|++|+
T Consensus 274 -~~~v~~~d~~~~--------------------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~ 310 (349)
T 1jmx_B 274 -LNRLAKYDLKQR--------------------------------------KLIKAANLDH---TYYCVAF-DKKGDKLY 310 (349)
T ss_dssp -ESEEEEEETTTT--------------------------------------EEEEEEECSS---CCCEEEE-CSSSSCEE
T ss_pred -cCeEEEEECccC--------------------------------------eEEEEEcCCC---CccceEE-CCCCCEEE
Confidence 778999998763 2223333222 2567888 99999998
Q ss_pred EecCCCeEEEEEecCCeEEEEeecC
Q 012712 360 SGSDCGRIFIWKKKGGELIRVIEAD 384 (458)
Q Consensus 360 ~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (458)
+++.++.|++||+.+++.+..+...
T Consensus 311 ~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 311 LGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EESBSSEEEEEETTTTEEEEEEECS
T ss_pred EecCCCeEEEEeccccceeeeeecC
Confidence 8888999999999999988887654
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=1.9e-25 Score=210.46 Aligned_cols=263 Identities=10% Similarity=0.072 Sum_probs=188.8
Q ss_pred CCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeeccccc-cceEEEEEcCCCCeEEEEecC---CCeEEE
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGE---DGLVQH 177 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~---dg~i~i 177 (458)
+..+|++++|+| ||+.||+++. ||.++||++..++... +..|. ..+..++|+|+ +++++++. +....+
T Consensus 20 ~~~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEE
T ss_pred hccchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC--eEEEEeccCCCCcceEE
Confidence 356799999999 9999999887 9999999985544322 44455 68999999998 56776664 444566
Q ss_pred EeCCC--CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712 178 FDLRT--GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (458)
Q Consensus 178 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (458)
|.+.. ......+.. .......+|+|++...+++.+.++.+.+||+.+++.. .
T Consensus 93 ~~~~~~~~g~~~~l~~-----------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~---------------~ 146 (582)
T 3o4h_A 93 FKVNTSRPGEEQRLEA-----------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR---------------E 146 (582)
T ss_dssp EEEETTSTTCCEECTT-----------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE---------------E
T ss_pred EEEeccCCCccccccC-----------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE---------------E
Confidence 55443 211112110 1123355777774444444444555669999876521 1
Q ss_pred cccccccceeEEEeCCCCcEEEEec-C----CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccc
Q 012712 256 LIGDEQVGITGLAFSDQSELLVSYN-D----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (458)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~-~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (458)
+.. +.. .+++|+|||++|++++ + ..|++||+.++.
T Consensus 147 l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~------------------------------------- 186 (582)
T 3o4h_A 147 LAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG------------------------------------- 186 (582)
T ss_dssp EEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-------------------------------------
T ss_pred eec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-------------------------------------
Confidence 111 112 7899999999999765 3 359999987632
Q ss_pred cCceeecCccceeeeeEEEEecCCCcEEEEecCCC--eEEEEEecCCeEEEEeecCCceeeEEE--------ecCCCCeE
Q 012712 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGGELIRVIEADRHVVNCIE--------PHPHSTVL 400 (458)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l 400 (458)
...+..+... +..++| +|||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++
T Consensus 187 --~~~l~~~~~~--~~~~~~-SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 187 --LRVFDSGEGS--FSSASI-SPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp --CEEECCSSCE--EEEEEE-CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred --ceEeecCCCc--cccceE-CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence 2355556553 788998 99999999888888 8999999998887 7778887777778 99999989
Q ss_pred EEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCc
Q 012712 401 ASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCS 449 (458)
Q Consensus 401 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~ 449 (458)
++++.|+.+++|++ ++... ...+.+.+++|+ ||+++++++.+..
T Consensus 261 ~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 261 VVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp EEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred EEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 99999999999999 54443 233568899999 9999988887754
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=9.2e-26 Score=218.21 Aligned_cols=329 Identities=11% Similarity=0.021 Sum_probs=211.1
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCc---ceeEEEEccCCCCeEEEEEcC---------CCcEEEe
Q 012712 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAA---------DGQVRHA 133 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~---------dg~i~vw 133 (458)
+++|+|||++++++ .|+.|++||+.+++....+ ..|.. .+.+++|+| ||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence 78999999766554 6899999999998875554 34433 389999999 9999998876 6899999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCccee-------ecc
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT-------VVN 205 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~ 205 (458)
|+.+++......+ ...+..++|+|+|. .|+.+. ++.|++||+.+++........... ...++.. ...
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred ECCCCccccceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 9988765211112 24688899999995 556554 789999999888764332111000 0000000 011
Q ss_pred eEEEEECCCCCcEEEEecCCC----------------------------------eEEEEecCCCccCCCccCCCCCCCc
Q 012712 206 LNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQPADYF 251 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (458)
..+++|+|| ++.|++++.|. .|++||+.+++......+.
T Consensus 171 ~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~------ 243 (719)
T 1z68_A 171 KYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP------ 243 (719)
T ss_dssp SCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC------
T ss_pred cccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc------
Confidence 258999998 67888877542 7889999876531000000
Q ss_pred CCCccccccccceeEEEeCCCCcEEEEecC-C----cEEEEE----ccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712 252 CPPNLIGDEQVGITGLAFSDQSELLVSYND-E----FIYLFT----QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (458)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~----~i~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (458)
.......+...+..++|+||++++++..+ + .|.+|| ..++.
T Consensus 244 -~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~----------------------------- 293 (719)
T 1z68_A 244 -VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD----------------------------- 293 (719)
T ss_dssp -CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-----------------------------
T ss_pred -CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-----------------------------
Confidence 00112346678999999999987776432 1 388888 55431
Q ss_pred CCCCcccccCceee----cCccceeeee-----EEEEecCCCcEEEE--ecCCC--eEEEEEecCCeEEEEeecCCceee
Q 012712 323 STANTDVRIAPQVY----KGHRNCVTVK-----GVNFFGPKCEYVVS--GSDCG--RIFIWKKKGGELIRVIEADRHVVN 389 (458)
Q Consensus 323 ~~~~~~~~~~~~~~----~~~~~~~~i~-----~~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~ 389 (458)
....+ .+|... +. .+.| +|||+.|+. ...+| .|++||+.+++ ...+..+...+.
T Consensus 294 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~-spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~ 360 (719)
T 1z68_A 294 ---------CPKTQEHIEESRTGW--AGGFFVSTPVF-SYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI 360 (719)
T ss_dssp ---------CCGGGEEEEECSSSC--SSSSSCCCCEE-CTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred ---------eEEEEecccccCCce--EccccCCccEE-CCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence 11122 233332 22 5667 999996554 44455 57777876665 456665666677
Q ss_pred EEEecCCCCeEEEeecC-----CcEEEecCCc--cc--ccccc----cccccEEEEEEecCCcEEEe-eecC--CceEEE
Q 012712 390 CIEPHPHSTVLASSGIE-----SDIKILTPNA--AD--RATLP----TNIEQVCFSIYSADYWWSKS-QNFS--CSILLF 453 (458)
Q Consensus 390 ~~~~s~~~~~l~s~~~d-----~~i~iw~~~~--~~--~~~~~----~~~~~v~~~~~s~d~~~l~s-~~~d--~~i~~w 453 (458)
.+.++ +++.|+..+.+ +..++|.+.. +. ...+. .+...+..+.|||||++++. ++.+ ..+.+|
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~ 439 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH 439 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence 77777 88777666554 7889998753 31 22222 25566889999999977664 3333 245566
Q ss_pred E
Q 012712 454 E 454 (458)
Q Consensus 454 ~ 454 (458)
+
T Consensus 440 d 440 (719)
T 1z68_A 440 D 440 (719)
T ss_dssp C
T ss_pred E
Confidence 4
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=6.9e-24 Score=187.19 Aligned_cols=271 Identities=11% Similarity=0.040 Sum_probs=192.1
Q ss_pred CCCCCCCCeEEEeeC-------CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE
Q 012712 4 ASNNNNNKRARTSVD-------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL 76 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~-------d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 76 (458)
+.++|++++|++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+++
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---------------------~~-~~~~~~~~~~s~dg~~l 103 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---------------------IH-NDLKPFGATINNTTQTL 103 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---------------------EE-ESSCCCSEEEETTTTEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---------------------Ee-cCCCcceEEECCCCCEE
Confidence 457899998888774 56899999998876633 22 23447789999999855
Q ss_pred -EEecCCCeEEEEECCCcceeeeeccCCCc--------ceeEEEEccCCCCeEEEEEc--CCCcEEEeecccccceeeee
Q 012712 77 -ISGSDDRRVILWDWKTERVKLSFHSGHND--------NVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKL 145 (458)
Q Consensus 77 -~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~ 145 (458)
++...++.|.+||..+++.+..+..++.. .+.+++|+| +++.+++++ .++.|.+||..+++....
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~-- 179 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTA-- 179 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEE--
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEE--
Confidence 45566799999999999887766332221 278899999 998877765 478899999988776554
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
+..+...+..++|+|++ ..+++++.++.|.+||+.+++....+..... + ....+..++|+|++..++++...+
T Consensus 180 ~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~--~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDD----G--KEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCS----S--SCCCEEEEEEETTTTEEEEEESSS
T ss_pred ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----C--CCcccceEEECCCCCEEEEEeCCC
Confidence 44355567889999999 5677778899999999998877655543111 0 122466788888743344444445
Q ss_pred CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
+.|.+||..+++.. ..
T Consensus 253 ~~v~~~d~~~~~~~-------------------------~~--------------------------------------- 268 (353)
T 3vgz_A 253 AEVLVVDTRNGNIL-------------------------AK--------------------------------------- 268 (353)
T ss_dssp SEEEEEETTTCCEE-------------------------EE---------------------------------------
T ss_pred CEEEEEECCCCcEE-------------------------EE---------------------------------------
Confidence 77888887654310 00
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecC
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEAD 384 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 384 (458)
+.... ...++| +|+|+++++++ .++.|.+||..+++.+..+..+
T Consensus 269 ------------------------------~~~~~----~~~~~~-s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 269 ------------------------------VAAPE----SLAVLF-NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp ------------------------------EECSS----CCCEEE-ETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ------------------------------EEcCC----CceEEE-CCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence 00000 124566 99999665554 6899999999999998888754
Q ss_pred CceeeEEEecCCCCeEEEeecCC
Q 012712 385 RHVVNCIEPHPHSTVLASSGIES 407 (458)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~d~ 407 (458)
..+.+++|+|||++|+++..++
T Consensus 314 -~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 -THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -SEEEEEEECTTSCEEEEEEECC
T ss_pred -CCCCeEEEcCCCCEEEEEEccc
Confidence 4679999999999877776554
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.6e-23 Score=184.33 Aligned_cols=263 Identities=9% Similarity=0.075 Sum_probs=168.7
Q ss_pred cCCCceEEEEEecCCCEEEEecC---CCeEEEEECCCcce--eeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEE
Q 012712 59 KHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRH 132 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~v 132 (458)
.+...+..++|+|||+ |++++. ++.|.+|++.+++. +..+ ..+...+..++|+| ++++|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~sp--dg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDE--ARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEET--TTTEEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECC--CCCEEEEEeCCCCEEEE
Confidence 3556778899999999 555443 68999999977653 2222 34677889999999 999888887 6799999
Q ss_pred eeccccccee-eeeccc---------cccceEEEEEcCCCCeEEEEecCCCeEEEEeCC-CCCccceeeecccCCCCcce
Q 012712 133 AQILERGGVE-TKLLGK---------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYM 201 (458)
Q Consensus 133 w~~~~~~~~~-~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 201 (458)
|++....... ...+.. +...+.+++|+|++. ++++...++.|.+|++. +++..........
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~------- 184 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME------- 184 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECC-------
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-------
Confidence 9996432221 111111 123478899999995 77777788999999998 4443222111100
Q ss_pred eecceEEEEECCCCCcEEEEecCCCeEEEEecCC--CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE-
Q 012712 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS- 278 (458)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~- 278 (458)
....+..++|+|++..++++...++.|.+|++.. ++......... ..........+..++|+|+|++|++
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-------IPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-------SCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-------cCCCCCCCCcceeEEECCCCCEEEEE
Confidence 1124678999998433555567889999999874 22110000000 0000001245889999999997754
Q ss_pred ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (458)
Q Consensus 279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~ 357 (458)
.. ++.|.+|++..... ......+..+.. .+..++| +|||++
T Consensus 258 ~~~~~~v~v~~~~~~g~-----------------------------------~~~~~~~~~~~~--~~~~~~~-spdg~~ 299 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGH-----------------------------------LTLIQQISTEGD--FPRDFDL-DPTEAF 299 (347)
T ss_dssp EETTTEEEEEEECGGGC-----------------------------------EEEEEEEECSSS--CCCEEEE-CTTSSE
T ss_pred eCCCCEEEEEEECCCCc-----------------------------------EEEeEEEecCCC--CcCeEEE-CCCCCE
Confidence 43 56899999863100 122333333322 2678888 999998
Q ss_pred EEEecCC-CeEEEEEe--cCCeEE
Q 012712 358 VVSGSDC-GRIFIWKK--KGGELI 378 (458)
Q Consensus 358 l~~~~~d-g~i~iwd~--~~~~~~ 378 (458)
|++++.+ +.|.+|++ .++++.
T Consensus 300 l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8887654 89999955 456554
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.93 E-value=1.6e-22 Score=178.81 Aligned_cols=314 Identities=11% Similarity=0.068 Sum_probs=192.7
Q ss_pred CEEEEe----cCCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeecccc--cce
Q 012712 74 DILISG----SDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER--GGV 141 (458)
Q Consensus 74 ~~l~s~----~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~--~~~ 141 (458)
.+++.| +.++.|.+|+++ +++....... +......++|+| ++++|++++.+ +.|.+|++... +..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 344555 345789999764 4554333222 667788899999 99999998875 79999998763 222
Q ss_pred eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeee----cccCCCCcceeecceEEEEECCCCCc
Q 012712 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC----RPIDDRRNYMTVVNLNAIAIDPRNAN 217 (458)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (458)
.......+......+++ ++..++++...++.|.+|++.....+..... ..............+.+++|+|++..
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 22223334456677777 6645555555789999999976543322211 00000000012234688999998433
Q ss_pred EEEEecCCCeEEEEecCCCccCCCccCCCCCCCc-CCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCC
Q 012712 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF-CPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLG 294 (458)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~ 294 (458)
++++...++.|++|++......... ..+... ............+..++|+|+|+++++.+ ++.|.+|++.++..
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNK---EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTC---CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccc---cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 5555556889999998754310000 000000 00011112234578899999999777665 45899999875311
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee---cCccceeeeeEEEEecCCCcEEEEecC--CCeEEE
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY---KGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFI 369 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~s~~~~~l~~~~~--dg~i~i 369 (458)
.....+ ..+.. ....++| +|||++|+++.. ++.|.+
T Consensus 246 ------------------------------------~~~~~~~~~~~~~~--~~~~i~~-spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 246 ------------------------------------DEIQTVAADTVNAQ--GSGDIHL-SPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp ------------------------------------EEEEEEESCSSCCC--CEEEEEE-CTTSSEEEEEECSSSCEEEE
T ss_pred ------------------------------------EEeEEEecCCCCCC--CcccEEE-CCCCCEEEEECCCCCCEEEE
Confidence 011111 11111 2468888 999999876655 489999
Q ss_pred EEec--CCe--EEEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEe--cCCcccccccc--cccccEEEEEEe
Q 012712 370 WKKK--GGE--LIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKIL--TPNAADRATLP--TNIEQVCFSIYS 435 (458)
Q Consensus 370 wd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw--~~~~~~~~~~~--~~~~~v~~~~~s 435 (458)
|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+| |..+++...+. .+...+.++.|.
T Consensus 287 ~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9995 444 4445554 45688999999999888887 67899996 55566655443 234468888886
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=5.1e-24 Score=190.60 Aligned_cols=296 Identities=9% Similarity=-0.004 Sum_probs=198.1
Q ss_pred EEECCCcceeeeeccCCCcceeE-----EEEccCCCCeEEEEEcC-CCc--EEEeecccccceeeeeccccccceEEEEE
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQ-----AKIMPFTDDRSIVTCAA-DGQ--VRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~l~s~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
.+|..++..+..+ ..|...... .+|+| ||+.|++++. +|. |.+||+.+++.... ...+...+..+.|
T Consensus 14 ~~~~~~g~~~~~l-t~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~ 88 (388)
T 3pe7_A 14 YQDASTGAQVTRL-TPPDVTCHRNYFYQKCFTR--DGSKLLFGGAFDGPWNYYLLDLNTQVATQL--TEGRGDNTFGGFL 88 (388)
T ss_dssp EECTTTCCEEEEC-SCTTSCEECCCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTTCEEEEC--CCSSCBCSSSCEE
T ss_pred EecCCCCcceEEe-cCCcccccchhhcCccCCC--CCCEEEEEEcCCCCceEEEEeCCCCceEEe--eeCCCCCccceEE
Confidence 3466677766665 566655555 88999 9999998887 664 88888877665443 4455555556789
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce--EEEEECCCCCcEEEEe--------------
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL--NAIAIDPRNANLFAVA-------------- 222 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~-------------- 222 (458)
+|++ ..|+.++.++.|++||+.+++.......+. ..+ ....++|+ +.+++..
T Consensus 89 spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~----------~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 89 SPDD-DALFYVKDGRNLMRVDLATLEENVVYQVPA----------EWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CTTS-SEEEEEETTTEEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHH
T ss_pred cCCC-CEEEEEeCCCeEEEEECCCCcceeeeechh----------hcccccceeECCC-CCeeccccccCcccccccccc
Confidence 9999 567888888999999999987665544221 112 22345887 5666532
Q ss_pred --------cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecCC-------cEEE
Q 012712 223 --------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDE-------FIYL 286 (458)
Q Consensus 223 --------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~-------~i~i 286 (458)
..+..|++||+.+++. .....+...+..++|+| +|+.|+....+ .|.+
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~----------------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGES----------------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL 220 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCE----------------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred hhhhhhccCCcceEEEEECCCCce----------------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence 2446799999987652 12223455688999999 99988776532 5777
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-C-
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-C- 364 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-d- 364 (458)
++.... ....+..+.....+...+| +|||+.|+..+. +
T Consensus 221 ~d~~~~---------------------------------------~~~~l~~~~~~~~~~~~~~-spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 221 INEDGT---------------------------------------NMRKVKTHAEGESCTHEFW-VPDGSALVYVSYLKG 260 (388)
T ss_dssp EETTSC---------------------------------------CCEESCCCCTTEEEEEEEE-CTTSSCEEEEEEETT
T ss_pred EeCCCC---------------------------------------ceEEeeeCCCCcccccceE-CCCCCEEEEEecCCC
Confidence 776542 1223333332123667787 999998765433 2
Q ss_pred ---CeEEEEEecCCeEEE--EeecCCce---eeEEEecCCCCeEEEe---------ecCCcEEEecCCcccccccccccc
Q 012712 365 ---GRIFIWKKKGGELIR--VIEADRHV---VNCIEPHPHSTVLASS---------GIESDIKILTPNAADRATLPTNIE 427 (458)
Q Consensus 365 ---g~i~iwd~~~~~~~~--~~~~~~~~---v~~~~~s~~~~~l~s~---------~~d~~i~iw~~~~~~~~~~~~~~~ 427 (458)
..|++||+.+++... .+.++... ...++|+|||+.|+.. ..+..|++|++.+++...+..+..
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 261 SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence 249999999887433 33321111 2234799999988854 456789999999988777766665
Q ss_pred -----------cEEEEEEecCCcEEEeee-cCCceEEEEE
Q 012712 428 -----------QVCFSIYSADYWWSKSQN-FSCSILLFEW 455 (458)
Q Consensus 428 -----------~v~~~~~s~d~~~l~s~~-~d~~i~~w~~ 455 (458)
.+..++|||||++|+..+ .++...||.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 341 SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 578899999998877644 6788888875
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=2.4e-23 Score=183.41 Aligned_cols=297 Identities=14% Similarity=0.109 Sum_probs=187.8
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeee
Q 012712 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETK 144 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~ 144 (458)
.+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+| +++.+ ++...++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 3567888899999999999999999999887776333223678999999 99865 45567899999999887765443
Q ss_pred ecccc----ccceEEEEEcCCCCeEEEEecCC------------CeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 145 LLGKH----QGRAHKLAIEPGSPHVFYTCGED------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 145 ~~~~~----~~~v~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
..... ...+..++|+|++ +.+++++.+ +.|.+||+.+++......... ....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~ 152 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYL 152 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCC
T ss_pred EcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--------CCCcccc
Confidence 22211 3347889999999 456666644 899999998865433322111 2224788
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC-c-CCC-------ccccccccceeEEEeCCCCcEEEEe
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY-F-CPP-------NLIGDEQVGITGLAFSDQSELLVSY 279 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (458)
++|+|+ ++ +++++. .|.+||+.+++............. . .+. ............+++++++......
T Consensus 153 ~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 153 MRAADD-GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EEECTT-SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred eeECCC-Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 999998 45 455543 499999988765433222110000 0 000 0000000123456666654321111
Q ss_pred cCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCc
Q 012712 280 NDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCE 356 (458)
Q Consensus 280 ~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~ 356 (458)
.++ .+..++..++.. ....+..+.. .+..+++ +| +++
T Consensus 229 ~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~--~~~~~~~-sp~dg~ 268 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKT-------------------------------------HTQEFADLTE--LYFTGLR-SPKDPN 268 (349)
T ss_dssp CEEEEEEEEEETTTCCE-------------------------------------EEEEEEECSS--CEEEEEE-CSSCTT
T ss_pred cccceeEEEEeccCCcE-------------------------------------EecccccCCC--cceeeEe-cCCCCC
Confidence 111 122233332110 0000011111 2677887 99 999
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+++++ ++.|++||+.+++.+..+... ..+.+++|+|++++|++++.++.|++||+.+++..
T Consensus 269 ~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 269 QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 99988 889999999999988887643 45789999999999998888999999999887654
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.92 E-value=1.4e-23 Score=187.68 Aligned_cols=289 Identities=12% Similarity=0.085 Sum_probs=191.0
Q ss_pred EeecCCCceEE-----EEEecCCCEEEEecC-CC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 56 KLDKHRGCVNT-----VSFNTDGDILISGSD-DR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 56 ~~~~h~~~v~~-----~~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
.+..|...... .+|||||++|+.++. ++ .|.+||+.+++..... .++...+..+.|+| |++.|+.++.+
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~sp--dg~~l~~~~~~ 101 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSP--DDDALFYVKDG 101 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECT--TSSEEEEEETT
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcC--CCCEEEEEeCC
Confidence 46667666665 889999999998877 66 5888999888765544 56666666788999 99999999999
Q ss_pred CcEEEeecccccceeeeeccccccceEEE--EEcCCCCeEEEE----------------------ecCCCeEEEEeCCCC
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKL--AIEPGSPHVFYT----------------------CGEDGLVQHFDLRTG 183 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~s----------------------~~~dg~i~iwd~~~~ 183 (458)
+.|.+||+.+++.... ...+...+... .++|++ .+++. ...+..|.+||+.++
T Consensus 102 ~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 102 RNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp TEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred CeEEEEECCCCcceee--eechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 9999999998876544 33333434333 348988 45543 224478999999998
Q ss_pred CccceeeecccCCCCcceeecceEEEEECC-CCCcEEEEecCC------CeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (458)
+...... ....+..++|+| + +..|+....+ ..|.++|....+. ..+
T Consensus 179 ~~~~l~~-----------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------------~~l 231 (388)
T 3pe7_A 179 ESTVILQ-----------ENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARMWLINEDGTNM---------------RKV 231 (388)
T ss_dssp CEEEEEE-----------ESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSEEEEETTSCCC---------------EES
T ss_pred ceEEeec-----------CCccccccEECCCC-CCEEEEEEecCCCCCcceEEEEeCCCCce---------------EEe
Confidence 7554433 333578899999 8 5677665543 3788888765432 111
Q ss_pred ccccc-cceeEEEeCCCCcEEEEec--CC--c--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712 257 IGDEQ-VGITGLAFSDQSELLVSYN--DE--F--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (458)
Q Consensus 257 ~~~~~-~~i~~~~~~~~~~~l~~~~--~~--~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (458)
..... ..+..++|+|||+.|+..+ .+ . |++||+.+++.
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~----------------------------------- 276 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN----------------------------------- 276 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-----------------------------------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-----------------------------------
Confidence 12121 3577889999999776544 22 2 99999887421
Q ss_pred ccCceeecCcccee-eeeEEEEecCCCcEEEEe---------cCCCeEEEEEecCCeEEEEeecCCc-----------ee
Q 012712 330 RIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSG---------SDCGRIFIWKKKGGELIRVIEADRH-----------VV 388 (458)
Q Consensus 330 ~~~~~~~~~~~~~~-~i~~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v 388 (458)
..+..+.++.... ......| +|||+.|+.. ..+..|++||+.+++. ..+..+.. .+
T Consensus 277 -~~l~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 353 (388)
T 3pe7_A 277 -RQLTSMPACSHLMSNYDGSLM-VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTH 353 (388)
T ss_dssp -EEEEEECCEEEEEECTTSSEE-EEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTC
T ss_pred -EEEEcCCCceeeeecCCCCeE-ccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCC
Confidence 1111222211000 0112246 9999988854 4567899999988765 44555554 57
Q ss_pred eEEEecCCCCeEEEee-cCCcEEEecCC
Q 012712 389 NCIEPHPHSTVLASSG-IESDIKILTPN 415 (458)
Q Consensus 389 ~~~~~s~~~~~l~s~~-~d~~i~iw~~~ 415 (458)
..++|+|||+.|+..+ .++...||.+.
T Consensus 354 ~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 354 PHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 8899999999887665 46777777543
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=2.9e-23 Score=186.67 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=152.3
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEE----Ee
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI----SG 79 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~----s~ 79 (458)
+.+++++.++++++.|+ ++||+...-..... ................ ..|.+.|.+++|+|+|++|| ++
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK-----PGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCC-----TTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcc-----cccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34678888999999888 99998763211100 0000001111111122 24678899999999999999 89
Q ss_pred cCCCeEEEEECCCc--------cee--eeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccceeeeeccc
Q 012712 80 SDDRRVILWDWKTE--------RVK--LSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (458)
Q Consensus 80 ~~d~~i~iwd~~~~--------~~~--~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 148 (458)
+.|+.|+|||+.++ +.+ .....+|...|.+++|+| + +.+|++++.||.|++||++++..... ..+
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~~~~~~~--~~~ 190 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTETVKVCA--TLP 190 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESSSEEEEE--EEC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCCCcceee--ccC
Confidence 99999999998765 111 233467999999999999 7 78999999999999999988754432 556
Q ss_pred cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE-ecCCC-
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDE- 226 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg- 226 (458)
|...|.+++|+|++ .+|++++.||.|++||++ ++....+..+... ...+...+.+++|+++ ..++++ ...+|
T Consensus 191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~---~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~ 264 (434)
T 2oit_A 191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY---ESDHPVRVLDVLWIGT-YVFAIVYAAADGT 264 (434)
T ss_dssp GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTC---CTTSCEEEEEEEEEET-TEEEEEEEETTCC
T ss_pred CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCccc---CCCCceeEEEEEEecC-ceEEEEEccCCCc
Confidence 88999999999998 688999999999999998 5444443322110 0012347899999996 455543 33343
Q ss_pred -----eEEEEecCCCc
Q 012712 227 -----YTRLYDIRKYK 237 (458)
Q Consensus 227 -----~i~i~d~~~~~ 237 (458)
.+++|+++..+
T Consensus 265 ~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 265 LETSPDVVMALLPKKE 280 (434)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCCceEEEEeccCC
Confidence 38999998653
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=5.5e-22 Score=175.40 Aligned_cols=305 Identities=10% Similarity=0.076 Sum_probs=189.1
Q ss_pred CCCeEEEee----CCCcEEEEEcc--ccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 9 NNKRARTSV----DKALVDVWLRE--LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 9 ~~~~l~~~~----~d~~i~iw~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
...+++.|+ .++.|.+|.+. +|++. .+..+ |......++|+|||++|++++.+
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~-------------------~~~~~--~~~~p~~l~~spdg~~l~~~~~~ 70 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESL-------------------PLSDA--EVANPSYLIPSADGKFVYSVNEF 70 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEE-------------------EEEEE--ECSCCCSEEECTTSSEEEEEECC
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEE-------------------Eeecc--cCCCCceEEECCCCCEEEEEEcc
Confidence 344566663 46789999775 34432 12223 66778889999999999998875
Q ss_pred ----CeEEEEECCC--cce--eeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccceeee----ecc--
Q 012712 83 ----RRVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK----LLG-- 147 (458)
Q Consensus 83 ----~~i~iwd~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~----~~~-- 147 (458)
+.|.+|+++. ++. +... ..+......+++ ++++|++++ .++.|.+|++.....+... ...
T Consensus 71 ~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 71 SKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp SSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred CCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 7999998865 332 2222 234455666666 555565554 6889999999754432210 011
Q ss_pred ------ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc------ccee---eecccCCCCcceeecceEEEEEC
Q 012712 148 ------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA------TELF---TCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 148 ------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
.+...+.+++|+|++..++++...++.|.+|++..... +... ...... ....+..++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~s 219 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA------PGSGPRHLIFN 219 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC------TTCCEEEEEEC
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC------CCCCCeEEEEc
Confidence 11234588999999965666666789999999876542 1111 000000 12246789999
Q ss_pred CCCCcEEEEec-CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C--CcEEEEE
Q 012712 213 PRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--EFIYLFT 288 (458)
Q Consensus 213 p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--~~i~i~~ 288 (458)
|+ ++++++++ .++.|.+||+.+++...... ......+......++|+|+|++|+++. . +.+.+|+
T Consensus 220 pd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~----------~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 220 SD-GKFAYLINEIGGTVIAFRYADGMLDEIQT----------VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK 288 (361)
T ss_dssp TT-SSEEEEEETTTCEEEEEEEETTEEEEEEE----------EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred CC-CCEEEEEcCCCCeEEEEEecCCceEEeEE----------EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence 98 56665555 78999999998654211100 011112234467999999999886654 4 4799999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRI 367 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i 367 (458)
+...... ......+.. .. .+..++| +|||++|++++ .++.|
T Consensus 289 ~~~~~g~----------------------------------~~~~~~~~~-g~--~~~~~~~-spdg~~l~~~~~~~~~v 330 (361)
T 3scy_A 289 VDETNGT----------------------------------LTKVGYQLT-GI--HPRNFII-TPNGKYLLVACRDTNVI 330 (361)
T ss_dssp ECTTTCC----------------------------------EEEEEEEEC-SS--CCCEEEE-CTTSCEEEEEETTTTEE
T ss_pred EcCCCCc----------------------------------EEEeeEecC-CC--CCceEEE-CCCCCEEEEEECCCCCE
Confidence 8631100 111222222 11 3678888 99999988877 67899
Q ss_pred EEEEec--CCeEEEEe-ecCCceeeEEEec
Q 012712 368 FIWKKK--GGELIRVI-EADRHVVNCIEPH 394 (458)
Q Consensus 368 ~iwd~~--~~~~~~~~-~~~~~~v~~~~~s 394 (458)
.+|++. +++..... ..+...+.|++|.
T Consensus 331 ~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 331 QIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 997654 66654433 1234467888885
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.92 E-value=1.1e-22 Score=196.57 Aligned_cols=351 Identities=10% Similarity=0.019 Sum_probs=213.6
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCC-----ceEEEEEecCCCEEE
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG-----CVNTVSFNTDGDILI 77 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~ 77 (458)
.+.++|++++++++ |+.|++||+.+|+.. ..+.+|.. ....++|||||++|+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~ 77 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------VFLENSTFDEFGHSINDYSISPDGQFIL 77 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------EEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------EEEechhhhhhcccccceEECCCCCEEE
Confidence 45688999888886 999999999988754 22455543 234588999999999
Q ss_pred EecCC---------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc
Q 012712 78 SGSDD---------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (458)
Q Consensus 78 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 148 (458)
.++.+ +.+.+||+.+++... + ..|...+..++||| ||+.||.+. ++.|.+|++.++..... ...+
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l-~~~~~~~~~~~~SP--dG~~la~~~-~~~i~~~~~~~~~~~~l-t~~g 151 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-ERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPNLPSYRI-TWTG 151 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECC-S-SCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CSCC
T ss_pred EEECCeeeEEEccceEEEEEECCCCcEEE-c-ccCCCcceeeEECC--CCCEEEEEE-CCeEEEEECCCCceEEE-cCCC
Confidence 98876 567799999987643 3 56778899999999 999999885 68999999987764432 1223
Q ss_pred cccce-----------------EEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 149 HQGRA-----------------HKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 149 ~~~~v-----------------~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
+...+ ..+.|+|||. .|+..+ .++.+.+|++....... . ....+..+.
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~--~-----------~~~~~~~~~ 217 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDES--L-----------QYPKTVRVP 217 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTT--C-----------SSCEEEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCC--C-----------CCCcceeec
Confidence 32222 3589999995 455554 44558888764322111 0 111355666
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCC---CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C--C--
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRK---YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--E-- 282 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--~-- 282 (458)
+.+.+ .. .....|++||+.+ ++......+. .......+...+..++|+|||++++... . +
T Consensus 218 yp~~G-~~----~~~~~l~v~d~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~ 285 (740)
T 4a5s_A 218 YPKAG-AV----NPTVKFFVVNTDSLSSVTNATSIQIT-------APASMLIGDHYLCDVTWATQERISLQWLRRIQNYS 285 (740)
T ss_dssp CCBTT-SC----CCEEEEEEEETTSCCSSSCCCEEEEC-------CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred CCCCc-Cc----CCeeEEEEEECCCCCCCCcceEEEec-------CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence 76653 21 1223689999988 5211110000 0000113567799999999999766543 1 1
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee--cCccceee---eeEEEEecCCCcE
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVT---VKGVNFFGPKCEY 357 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---i~~~~~~s~~~~~ 357 (458)
.|++||+.++..... ......+ .++..... .....| +|||+.
T Consensus 286 ~i~~~d~~tg~~~~~--------------------------------~~~~~~l~~~~~~~~v~~~~~~~p~f-spDG~~ 332 (740)
T 4a5s_A 286 VMDICDYDESSGRWN--------------------------------CLVARQHIEMSTTGWVGRFRPSEPHF-TLDGNS 332 (740)
T ss_dssp EEEEEEEETTTTEEE--------------------------------ECGGGCEEEECSSSCSSSSSCCCCEE-CTTSSE
T ss_pred EEEEEECCCCccccc--------------------------------eeEEEEeeeccCCceEccCcCCCceE-cCCCCE
Confidence 599999987530000 0001111 22222111 224567 999998
Q ss_pred EE-EecC-C--CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE-Eeec----CCcEEE--ecCCccccc-cccc-
Q 012712 358 VV-SGSD-C--GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA-SSGI----ESDIKI--LTPNAADRA-TLPT- 424 (458)
Q Consensus 358 l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~----d~~i~i--w~~~~~~~~-~~~~- 424 (458)
|+ ..+. + ..|++||+.+++.. .+......+..+.. +|++.|+ ++.. .+...| .++.++... .+..
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~ 410 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE 410 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred EEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence 77 5543 3 46888898766554 44433444555432 3466554 4433 233444 455554332 2321
Q ss_pred ---ccccEEEEEEecCCcEEEe
Q 012712 425 ---NIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 425 ---~~~~v~~~~~s~d~~~l~s 443 (458)
.......+.|||||++++.
T Consensus 411 ~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 411 LNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp TSTTTBCBEEEEECTTSSEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEE
Confidence 2356889999999987654
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.91 E-value=2.7e-22 Score=176.18 Aligned_cols=310 Identities=12% Similarity=0.086 Sum_probs=203.6
Q ss_pred CCCCCeEEEee------CCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 7 NNNNKRARTSV------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 7 ~~~~~~l~~~~------~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
+++++++++.. .|+.|.+||..+++++. ++..+..+ .++|+|||++|+++.
T Consensus 12 ~~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~---------------------~i~~g~~p--~i~~spdg~~lyv~~ 68 (361)
T 2oiz_A 12 APQENRIYVMDSVFMHLTESRVHVYDYTNGKFLG---------------------MVPTAFNG--HVQVSNDGKKIYTMT 68 (361)
T ss_dssp SCGGGEEEEEECCGGGGGGCEEEEEETTTCCEEE---------------------EEECCEEE--EEEECTTSSEEEEEE
T ss_pred CCCCCEEEEECCCCCccccCeEEEEECCCCeEEE---------------------EecCCCCC--ceEECCCCCEEEEEE
Confidence 34667776653 47899999999887663 35555555 899999999999876
Q ss_pred ----------CCCeEEEEECCCcceeeeeccC-----CCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceee
Q 012712 81 ----------DDRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET 143 (458)
Q Consensus 81 ----------~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~ 143 (458)
.++.|.+||..+++.+..+... +......++++| |+++|+++.. ++.|.+||+.+++.+..
T Consensus 69 ~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 69 TYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred ecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 2578999999988887766322 234567899999 9999998874 57899999988765433
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
. +. . .....+.+.|+++..+++.+.||.+.+|++.. ++............. .. ....+.++|+ +..++..
T Consensus 147 ~-i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~----~~-~~~~~~~~~~-g~~~~~~ 217 (361)
T 2oiz_A 147 V-TA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV----KD-DPIFIAPALD-KDKAHFV 217 (361)
T ss_dssp E-GG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT----TT-SCBCSCCEEC-SSEEEEE
T ss_pred E-ec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC----CC-CceEEEeccc-CCEEEEE
Confidence 0 11 1 12233567887767788899999999999865 443311110000000 00 1112233555 3455566
Q ss_pred cCCCeEEEEecCCCccCCCccCCCCCCCcCCC-ccccccccceeEEEeCCCCcEEEEec------------CCcEEEEEc
Q 012712 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP-NLIGDEQVGITGLAFSDQSELLVSYN------------DEFIYLFTQ 289 (458)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~------------~~~i~i~~~ 289 (458)
+.++.+.++|+..........+. . .... ............++|+|+++.+.... .+.|.+||+
T Consensus 218 ~~~~~v~v~d~~~~~~~~~~~~~--~--~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 218 SYYGNVYSADFSGDEVKVDGPWS--L--LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp BTTSEEEEEECSSSSCEEEEEEE--S--CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred eCCCeEEEEEecCCCceeccccc--c--cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 67899999998754311000000 0 0000 00000011122378999977665542 236999998
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
.+ .+.+..+..+. ..+++| +|||++|++++. +.|.+
T Consensus 294 ~t--------------------------------------~~~v~~i~~~~----p~~ia~-spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 294 KT--------------------------------------KQRVARIPGRD----ALSMTI-DQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TT--------------------------------------TEEEEEEECTT----CCEEEE-ETTTTEEEEECS-SCEEE
T ss_pred CC--------------------------------------CcEEEEEecCC----eeEEEE-CCCCCEEEEeCC-CeEEE
Confidence 87 34455555554 578888 999999998887 99999
Q ss_pred EEecCC--eEEEEeecCCceeeEEEecCCCC
Q 012712 370 WKKKGG--ELIRVIEADRHVVNCIEPHPHST 398 (458)
Q Consensus 370 wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 398 (458)
||..++ +.+.++..+......++++|+|+
T Consensus 330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999 99999876777788999999986
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.90 E-value=5.5e-23 Score=184.47 Aligned_cols=294 Identities=12% Similarity=0.042 Sum_probs=193.2
Q ss_pred ceEEEEEecCCCEEEEecCC---CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 63 CVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
.+.+++|||||++|+..... ..|.+||+.+++..... ..+......+.|+| |++.|+.++.++.|.+|++.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFIST--DERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECC--CCCEEEEEEcCCcEEEEECCCCC
Confidence 37788999999998876443 47899999887754332 33333333488999 99999999998899999998776
Q ss_pred ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
.... ...+.. |+|++ ..|+....+....+|. ..+.|+|+ ++.+
T Consensus 114 ~~~~--~~~~~~------~~~~g-~~l~~~~~~~~~~~~~---------------------------~~~~~spd-g~~~ 156 (396)
T 3c5m_A 114 EQVI--YTVDEE------WKGYG-TWVANSDCTKLVGIEI---------------------------LKRDWQPL-TSWE 156 (396)
T ss_dssp EEEE--EECCTT------EEEEE-EEEECTTSSEEEEEEE---------------------------EGGGCCCC-CSHH
T ss_pred cEEE--Eecccc------cCCCC-CEEEeccCCccccccc---------------------------cccccCCC-Ccce
Confidence 5433 222222 66666 5566555554444332 11346776 4555
Q ss_pred EEe-----cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecC-------CcEEE
Q 012712 220 AVA-----GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND-------EFIYL 286 (458)
Q Consensus 220 ~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-------~~i~i 286 (458)
+.. ..+..|++||+.+++.. ....+...+..+.|+| +++.|+..++ ..|++
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~----------------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELE----------------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEE----------------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred eeeeeccCCCcceEEEEECCCCcEE----------------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 443 35668999999876421 1113455788999999 7887666543 24777
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC--
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-- 364 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-- 364 (458)
|++..+. ...+..+.....+..++| +|||++|+.++.+
T Consensus 221 ~d~~~~~---------------------------------------~~~l~~~~~~~~~~~~~~-spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 221 VNEDGSN---------------------------------------VRKIKEHAEGESCTHEFW-IPDGSAMAYVSYFKG 260 (396)
T ss_dssp EETTSCC---------------------------------------CEESSCCCTTEEEEEEEE-CTTSSCEEEEEEETT
T ss_pred EECCCCc---------------------------------------eeEeeccCCCccccceEE-CCCCCEEEEEecCCC
Confidence 7765421 112222211123677888 9999988776543
Q ss_pred ---CeEEEEEecCCeEEEEeecCCceeeEEEecC-CCCeEEEee----------------cCCcEEEecCCccccccccc
Q 012712 365 ---GRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSG----------------IESDIKILTPNAADRATLPT 424 (458)
Q Consensus 365 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~----------------~d~~i~iw~~~~~~~~~~~~ 424 (458)
+.|++||+.+++........ . .. ++|+| ||++|++++ .+..|++|++.+++...+..
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK 337 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE
T ss_pred CccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC
Confidence 45999999888654433222 2 23 89999 999888754 34789999999887766655
Q ss_pred ccc-----------cEEEEEEecCCcEEEeee-cCCceEEEEE
Q 012712 425 NIE-----------QVCFSIYSADYWWSKSQN-FSCSILLFEW 455 (458)
Q Consensus 425 ~~~-----------~v~~~~~s~d~~~l~s~~-~d~~i~~w~~ 455 (458)
+.. .+..++|+|||++|+..+ .++...||.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 338 HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 544 256789999998887655 4667777765
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.90 E-value=3e-21 Score=169.55 Aligned_cols=306 Identities=7% Similarity=-0.055 Sum_probs=198.7
Q ss_pred CCCEEEEec------CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----------CCcEEEeec
Q 012712 72 DGDILISGS------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQI 135 (458)
Q Consensus 72 ~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~i~vw~~ 135 (458)
+++++++.. .|+.|.+||..+++.+..+ ..+..+ .++|+| |++++++++. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 455555432 3679999999999887776 344444 899999 9999998863 567999999
Q ss_pred ccccceeeeeccc----cccceEEEEEcCCCCeEEEEec-C-CCeEEEEeCCCCCccce-eeecccCCCCcceeecceEE
Q 012712 136 LERGGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 136 ~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~ 208 (458)
.+.+......+.. +......++++|+++ +|+++. . ++.|.+||+++++.+.. +... ....
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------------~~~~ 155 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAA------------GCWS 155 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGT------------TEEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCC------------Ccce
Confidence 8877665432221 224567799999995 555554 3 68999999999876554 3211 1233
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i 286 (458)
+.+.|++...+++.+.||.+.+|+... ++....... .........+ ..+.++|++..++..+ ++.+++
T Consensus 156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~---------~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v 225 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS---------KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYS 225 (361)
T ss_dssp EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC---------CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEE
T ss_pred eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc---------cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEE
Confidence 567787557888888999999998865 321100000 0001111111 1233456665555444 567999
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce--eecCccceeeeeEEEEecCCCcEEEEecC-
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEYVVSGSD- 363 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~s~~~~~l~~~~~- 363 (458)
+|+........ . ...... .......+.....+++ +|+++.++++..
T Consensus 226 ~d~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~~p~g~~~~a~-~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 226 ADFSGDEVKVD-G-----------------------------PWSLLNDEDKAKNWVPGGYNLVGL-HRASGRMYVFMHP 274 (361)
T ss_dssp EECSSSSCEEE-E-----------------------------EEESCCHHHHHTTCEECCSSCEEE-ETTTTEEEEEEES
T ss_pred EEecCCCceec-c-----------------------------cccccCccccccccccCCeeEEEE-ecCCCeEEEEEcc
Confidence 99864311000 0 000000 0000000000122566 999888776543
Q ss_pred ----------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc--ccccc-ccccccEE
Q 012712 364 ----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA--DRATL-PTNIEQVC 430 (458)
Q Consensus 364 ----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~--~~~~~-~~~~~~v~ 430 (458)
.+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. +.|.+||..++ +.... ........
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~ 351 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASL 351 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEE
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcE
Confidence 3589999999999999998877 999999999999998886 99999999998 76644 46666788
Q ss_pred EEEEecCCc
Q 012712 431 FSIYSADYW 439 (458)
Q Consensus 431 ~~~~s~d~~ 439 (458)
.++++|||.
T Consensus 352 ~~~~~p~G~ 360 (361)
T 2oiz_A 352 QVQFHPVGG 360 (361)
T ss_dssp EEEECCCSC
T ss_pred EEEecCCCC
Confidence 999999986
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=4e-22 Score=192.67 Aligned_cols=328 Identities=9% Similarity=-0.018 Sum_probs=209.1
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcc-----eeEEEEccCCCCeEEEEEcCC---------
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-----VFQAKIMPFTDDRSIVTCAAD--------- 127 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~l~s~~~d--------- 127 (458)
....+++|+|||++|+++ |+.|++||+.+++....+ .+|... ...+.||| ||++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccc
Confidence 346689999999999886 899999999999875544 555432 24588999 99999998875
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCccee----
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT---- 202 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~---- 202 (458)
+.+.+||+.+++... +..|...+...+|+|||. .|+.+ .++.|++||+.+++..+........ ...++..
T Consensus 92 ~~~~~~d~~~~~~~~---l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEEEETTTTEECC---SSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred eEEEEEECCCCcEEE---cccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 567799998876432 566778899999999995 45555 4689999999887754322110000 0000000
Q ss_pred ---ecceEEEEECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712 203 ---VVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (458)
Q Consensus 203 ---~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (458)
......+.|+|| ++.|+.++.| +.+.+|++...... . .+...+..+.+.+.|...
T Consensus 167 ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~--------------~----~~~~~~~~~~yp~~G~~~-- 225 (740)
T 4a5s_A 167 EEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDE--------------S----LQYPKTVRVPYPKAGAVN-- 225 (740)
T ss_dssp HHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCST--------------T----CSSCEEEEEECCBTTSCC--
T ss_pred chhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCC--------------C----CCCCcceeecCCCCcCcC--
Confidence 012245899998 6777776644 44888887543210 0 123345667777766320
Q ss_pred ecCCcEEEEEccC---CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 279 YNDEFIYLFTQDM---GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 279 ~~~~~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
....+++||+.+ +....... ......+.++.. .+..++| +|||
T Consensus 226 -~~~~l~v~d~~~~~~~~~~~~~~------------------------------l~~~~~~~~~~~--~~~~~~w-spdg 271 (740)
T 4a5s_A 226 -PTVKFFVVNTDSLSSVTNATSIQ------------------------------ITAPASMLIGDH--YLCDVTW-ATQE 271 (740)
T ss_dssp -CEEEEEEEETTSCCSSSCCCEEE------------------------------ECCCHHHHTSCE--EEEEEEE-EETT
T ss_pred -CeeEEEEEECCCCCCCCcceEEE------------------------------ecCCccCCCCCe--EEEEEEE-eCCC
Confidence 112589999886 42100000 000001112333 4888998 9999
Q ss_pred cEEEEec----CCCeEEEEEecCCe----EE--EEe--ecCCceee-----EEEecCCCCeEE-Eeec-C--CcEEEecC
Q 012712 356 EYVVSGS----DCGRIFIWKKKGGE----LI--RVI--EADRHVVN-----CIEPHPHSTVLA-SSGI-E--SDIKILTP 414 (458)
Q Consensus 356 ~~l~~~~----~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~~~~s~~~~~l~-s~~~-d--~~i~iw~~ 414 (458)
+.++... .+..|++||+.+++ +. ..+ ..|...+. .++|+|||+.|+ ..+. + ..|.+|++
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 9766543 33479999999887 22 222 44665554 789999999877 5553 3 46888899
Q ss_pred CcccccccccccccEEEEEEecCCcEEEe-eec----CCceEEEEE
Q 012712 415 NAADRATLPTNIEQVCFSIYSADYWWSKS-QNF----SCSILLFEW 455 (458)
Q Consensus 415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~----d~~i~~w~~ 455 (458)
.+++...+......+..+. ++|++.|+. ++. .+...||..
T Consensus 352 ~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 352 DKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp TCSSCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred CCCceEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE
Confidence 9888877777766676654 355765544 443 244566653
No 167
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.6e-22 Score=180.46 Aligned_cols=218 Identities=12% Similarity=0.100 Sum_probs=150.1
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC-CCCCCcCCCccccccccceeEEEeCCCCcEEE----Ee
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG-QPADYFCPPNLIGDEQVGITGLAFSDQSELLV----SY 279 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----~~ 279 (458)
.++.++++++ +.++++++.++ +++|+............. ....... ......+...|.+++|+|+|++|+ ++
T Consensus 38 ~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 38 RSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV-QGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC-CCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC-ccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4678999997 57888888887 899886543211000000 0000000 111122356799999999999999 56
Q ss_pred c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcE
Q 012712 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEY 357 (458)
Q Consensus 280 ~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~ 357 (458)
+ ++.|++||+.+........ .........+.+|... |.+++| +|+ +++
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~---------------------------~~~~~~~~~~~~h~~~--V~~v~~-~p~~~~~ 164 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQ---------------------------KRPFAYHKLLKDAGGM--VIDMKW-NPTVPSM 164 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSS---------------------------CCCSEEEECCCSGGGS--EEEEEE-CSSCTTE
T ss_pred CCCceEEEEEccccccCCcCC---------------------------cceeeeeeccCCCCCc--eEEEEE-CCCCCCE
Confidence 6 4479999987631000000 0000113455667764 899999 998 889
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-------cccccEE
Q 012712 358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-------TNIEQVC 430 (458)
Q Consensus 358 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-------~~~~~v~ 430 (458)
|++++.||+|++||+.++..+....+|...|.+++|+|+|++|++|+.||.|++||+.......+. .|...+.
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEE
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEE
Confidence 999999999999999999877777788999999999999999999999999999999832222222 2334799
Q ss_pred EEEEecCCcEEEe-eecCCc------eEEEEE
Q 012712 431 FSIYSADYWWSKS-QNFSCS------ILLFEW 455 (458)
Q Consensus 431 ~~~~s~d~~~l~s-~~~d~~------i~~w~~ 455 (458)
+++|++++.++++ .+.||. +++|+.
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 9999999988855 445543 788875
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=4.1e-21 Score=169.74 Aligned_cols=274 Identities=12% Similarity=0.074 Sum_probs=173.9
Q ss_pred EEEEEcCC--CcEEEeecc--cccceeeeec-cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC-CCCccceeeecc
Q 012712 120 SIVTCAAD--GQVRHAQIL--ERGGVETKLL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRP 193 (458)
Q Consensus 120 ~l~s~~~d--g~i~vw~~~--~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~ 193 (458)
.++.|+.. +.|.+|++. +++....... ......+..++|+|++ ++|++++.+ .|.+|++. +++........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~- 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHP- 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEE-
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEee-
Confidence 34555542 467777664 3332211111 1233467889999999 567777777 99999997 66543322211
Q ss_pred cCCCCcceeecceEEEEECCCCCc--EEEEec-------------CCCeEEEEecCC-CccCCCccCCCCCCCcCCCccc
Q 012712 194 IDDRRNYMTVVNLNAIAIDPRNAN--LFAVAG-------------SDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
. . ..+..++|+|+ ++ +++++. .++.+.+|++.. ++..... ....
T Consensus 81 ~-------~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~-----------~~~~ 140 (365)
T 1jof_A 81 I-------G-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV-----------QNYE 140 (365)
T ss_dssp C-------C-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE-----------EEEE
T ss_pred c-------C-CCCccEEECCC-CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE-----------eeEE
Confidence 0 0 12345889998 56 355553 689999999974 3321100 0000
Q ss_pred cccccceeEEEeCCCCcEEEEec--CCcEEEEEcc-CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712 258 GDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQD-MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (458)
..+...+.+++|+|+|++|+++. ++.|++|++. +++. ....
T Consensus 141 ~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~------------------------------------~~~~ 184 (365)
T 1jof_A 141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------------------------------------ELVG 184 (365)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------------------------------------EEEE
T ss_pred eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE------------------------------------EEee
Confidence 11345789999999999887765 4579999987 4311 1111
Q ss_pred eec--CccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEec--CCeEE---EEee-------cCCc------eeeEEE-
Q 012712 335 VYK--GHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK--GGELI---RVIE-------ADRH------VVNCIE- 392 (458)
Q Consensus 335 ~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~---~~~~-------~~~~------~v~~~~- 392 (458)
.+. .+.. .+..++| +|||++|++++. ++.|.+|++. +++.. ..+. +|.. .+..++
T Consensus 185 ~~~~~~~g~--~p~~~~~-spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 185 SVDAPDPGD--HPRWVAM-HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEECSSTTC--CEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eEecCCCCC--CCCEeEE-CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 222 1122 2678888 999999987765 6899999875 46542 2222 1222 588999
Q ss_pred ecCCCCeEEEeecCC------cEEEecCC-cccccc----cccccccEEEEEEec---CCcEEEeeecC-CceEEEEE
Q 012712 393 PHPHSTVLASSGIES------DIKILTPN-AADRAT----LPTNIEQVCFSIYSA---DYWWSKSQNFS-CSILLFEW 455 (458)
Q Consensus 393 ~s~~~~~l~s~~~d~------~i~iw~~~-~~~~~~----~~~~~~~v~~~~~s~---d~~~l~s~~~d-~~i~~w~~ 455 (458)
|+|||++|++++.+. .|.+|++. +++... ...+......++|+| ||++|++++.+ +.|.+|++
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 999999988765432 89999986 455432 222344567889999 89999988765 89999986
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.89 E-value=2.1e-19 Score=165.35 Aligned_cols=320 Identities=12% Similarity=0.081 Sum_probs=220.9
Q ss_pred cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc--cccceeeeeccc
Q 012712 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL--ERGGVETKLLGK 148 (458)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~ 148 (458)
|.+.++++...++.|.++|..+++.+.++.. ...+..+.|+| |++++++++.++.|.+||+. +.+.+.. +..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~--i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEE--EEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEE--Eec
Confidence 4456777888899999999999998887743 34567999999 99999999999999999995 5554443 332
Q ss_pred cccceEEEEEc----CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC--CCcceeecceEEEEECCCCCcEEEEe
Q 012712 149 HQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 149 ~~~~v~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
......++|+ |+|+.++++...++.|.++|..+.+.+..+....... ...| ....+..+..+++++.+++..
T Consensus 239 -G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~-p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 -GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEEEEECSSSSEEEEEE
T ss_pred -CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc-CCCceEEEEEcCCCCEEEEEe
Confidence 2345789999 6996666666677999999999988887765432110 0000 122577888899877777777
Q ss_pred cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCC
Q 012712 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~ 300 (458)
..+|.|.++|....+.... ..+ ........+.|+|+|++++++. .+.|.++|+.+++.
T Consensus 317 ~~~g~v~~vd~~~~~~~~v------------~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl------ 376 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKT------------TEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL------ 376 (567)
T ss_dssp TTTTEEEEEETTCSSEEEE------------EEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE------
T ss_pred cCCCeEEEEecCCCcccee------------eee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE------
Confidence 8889999999876431100 000 1123456789999999877665 56899999987421
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeec-----CccceeeeeEEEEecCCCcEEE-Eec-CCCeEEEEEec
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-----GHRNCVTVKGVNFFGPKCEYVV-SGS-DCGRIFIWKKK 373 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~s~~~~~l~-~~~-~dg~i~iwd~~ 373 (458)
...+. .|.. ....|++|++..+. +.. .++.|.++|..
T Consensus 377 --------------------------------~~~i~vgg~~Phpg----~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 377 --------------------------------VAIEDTGGQTPHPG----RGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp --------------------------------EEEEECSSSSBCCT----TCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred --------------------------------EEEEeccCcCCCCc----cceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 11111 1221 12223488755444 443 46899999998
Q ss_pred C-------CeEEEEeecCCceeeEEEecCCCCeEEEeec-------CCcEEEecCCcc-----c----ccc------ccc
Q 012712 374 G-------GELIRVIEADRHVVNCIEPHPHSTVLASSGI-------ESDIKILTPNAA-----D----RAT------LPT 424 (458)
Q Consensus 374 ~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------d~~i~iw~~~~~-----~----~~~------~~~ 424 (458)
+ .+.++++......-..+..+|++++|.+... .+.|.++|+.+. . .+. +..
T Consensus 421 ~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred CCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence 7 6788888765444456789999998887652 469999999876 2 111 112
Q ss_pred ccccEEEEEEecCCcEEEeee-----cCCceEEEE
Q 012712 425 NIEQVCFSIYSADYWWSKSQN-----FSCSILLFE 454 (458)
Q Consensus 425 ~~~~v~~~~~s~d~~~l~s~~-----~d~~i~~w~ 454 (458)
...++..+.|+|+|+++..+. .++.|.|+|
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 245689999999997765543 368898887
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=2.1e-20 Score=165.19 Aligned_cols=262 Identities=9% Similarity=0.027 Sum_probs=166.5
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECC-CcceeeeeccCCCcceeEEEEccCCCCeE--EEEEc-----------
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRS--IVTCA----------- 125 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--l~s~~----------- 125 (458)
+...+..++|+|||++|++++.+ .|.+|++. +++..........+...+++|+| +++. +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC--CCCEEEEEEecCCcceecccee
Confidence 44567899999999999988887 89999997 67654332111112356689999 9994 45553
Q ss_pred --CCCcEEEeeccc-ccceeeeecc--ccccceEEEEEcCCCCeEEEEe-cCCCeEEEEeCC-CCCccceeeecccCCCC
Q 012712 126 --ADGQVRHAQILE-RGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLR-TGAATELFTCRPIDDRR 198 (458)
Q Consensus 126 --~dg~i~vw~~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~ 198 (458)
.+|.+.+|++.. ++........ .+...+.+++|+|+++ .++++ ..++.|++||+. +++........ ...
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~-- 190 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVD-APD-- 190 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSS--
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCC--
Confidence 689999999974 4332221111 2456789999999995 45544 446899999998 66543211110 000
Q ss_pred cceeecceEEEEECCCCCcEEEEec-CCCeEEEEecCC--CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712 199 NYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (458)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (458)
+...+..++|+|+ ++++++++ .++.|.+|++.. ++.. .....+...|.+
T Consensus 191 ---~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~----------------------~~~~~~~~~~~~-- 242 (365)
T 1jof_A 191 ---PGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPV----------------------YTHHSFPLIPPG-- 242 (365)
T ss_dssp ---TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE----------------------EEEEEEESSCTT--
T ss_pred ---CCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEE----------------------EccceEEcCCCC--
Confidence 1224788899998 56666555 467888887653 1100 000001101100
Q ss_pred EEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc----eeeeeEEE-E
Q 012712 276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN----CVTVKGVN-F 350 (458)
Q Consensus 276 l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~-~ 350 (458)
+.++.. ...+..++ |
T Consensus 243 ------------------------------------------------------------~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 243 ------------------------------------------------------------IPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp ------------------------------------------------------------CCCBCTTTSSBSEEEEEEEE
T ss_pred ------------------------------------------------------------cCCcccccccccccccEEEE
Confidence 001110 01267888 7
Q ss_pred ecCCCcEEEEecCC-C-----eEEEEEec-CCeEEE---EeecCCceeeEEEecC---CCCeEEEeecC-CcEEEecCCc
Q 012712 351 FGPKCEYVVSGSDC-G-----RIFIWKKK-GGELIR---VIEADRHVVNCIEPHP---HSTVLASSGIE-SDIKILTPNA 416 (458)
Q Consensus 351 ~s~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d-~~i~iw~~~~ 416 (458)
+|||++|++++.+ + +|.+|++. +++... ....+...+..++|+| ||++|++++.+ +.|.+|+++.
T Consensus 263 -spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 263 -TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp -CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred -CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 9999998876543 2 89999996 566543 2333555678899999 89999988764 8999999876
Q ss_pred c
Q 012712 417 A 417 (458)
Q Consensus 417 ~ 417 (458)
.
T Consensus 342 ~ 342 (365)
T 1jof_A 342 E 342 (365)
T ss_dssp T
T ss_pred h
Confidence 5
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.88 E-value=4.6e-19 Score=163.13 Aligned_cols=335 Identities=13% Similarity=0.051 Sum_probs=225.3
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+.+.++++...++.|.++|..+++.+.+ +.. ...+..+.|+|||++|++++.|+.|.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~---------------------i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~v 222 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTV---------------------LDT-GYAVHISRLSASGRYLFVIGRDGKVNM 222 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEE---------------------EEC-SSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEE---------------------EeC-CCCccceEECCCCCEEEEEcCCCeEEE
Confidence 3455677888899999999999887743 332 235668999999999999999999999
Q ss_pred EECC--CcceeeeeccCCCcceeEEEEc----cCCCCeEEEEEcC-CCcEEEeecccccceeeeeccc--------ccc-
Q 012712 88 WDWK--TERVKLSFHSGHNDNVFQAKIM----PFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQG- 151 (458)
Q Consensus 88 wd~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~--------~~~- 151 (458)
||+. +++.+.++.. ......++|+ | ||+++++++. ++.|.++|..+.+.+......+ |..
T Consensus 223 iD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 223 IDLWMKEPTTVAEIKI--GSEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp EETTSSSCCEEEEEEC--CSEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EECCCCCCcEeEEEec--CCCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 9995 7777777633 3346799999 8 9988887765 5899999998877765533322 222
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
.+..+..+++++.+++....+|.|.++|....+........ .......+.|+|++..++++...++.|.++
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~---------~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------AERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------CCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee---------ccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 57788999988777888888899999998876533322211 112356789999854444555578899999
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
|+.++++......+ -...|.+.-..+ +.|+ +.++++.. ++.|.++|..+.+....
T Consensus 370 D~~t~kl~~~i~vg----------g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~----------- 427 (567)
T 1qks_A 370 DTKEGKLVAIEDTG----------GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN----------- 427 (567)
T ss_dssp ETTTTEEEEEEECS----------SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT-----------
T ss_pred ECCCCcEEEEEecc----------CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc-----------
Confidence 99988754332110 001122111122 5787 45555553 46899999876321100
Q ss_pred ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-------CCeEEEEEecCC-----e
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------CGRIFIWKKKGG-----E 376 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~-----~ 376 (458)
..+.++.+...... -..+.. +|++++|.+... .++|.++|+.+. .
T Consensus 428 --------------------~~kvv~~i~~~g~g--~~~i~~-~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 428 --------------------AWKILDSFPALGGG--SLFIKT-HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp --------------------BTSEEEEEECSCSC--CCCEEC-CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred --------------------cCEEEEEEecCCCC--CEEEEe-CCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 02233444433221 123445 999999987653 359999999877 2
Q ss_pred E-EEEee--------cCCceeeEEEecCCCCeEEEee-----cCCcEEEecCCccccccc
Q 012712 377 L-IRVIE--------ADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRATL 422 (458)
Q Consensus 377 ~-~~~~~--------~~~~~v~~~~~s~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~ 422 (458)
. ...+. .....+..+.|+|+|+.+..+. .++.|.|+|..+.++...
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 1 13332 1234688999999999776653 379999999998876543
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.88 E-value=7.4e-21 Score=170.55 Aligned_cols=295 Identities=9% Similarity=-0.017 Sum_probs=190.3
Q ss_pred CCCCCCCCCeEEEeeCC---CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCc-eEEEEEecCCCEEEE
Q 012712 3 DASNNNNNKRARTSVDK---ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNTDGDILIS 78 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d---~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s 78 (458)
.+.++|+|++|+..... ..|.+||+.+++.. .+..+... ...+.|+|||++|+.
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------~l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------QLTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------ECCCSSCBCTTTCEECTTSSEEEE
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------EeecCCCCccccceECCCCCEEEE
Confidence 45789999998877543 36888899876643 12223333 334789999999999
Q ss_pred ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
++.++.|.+||+.+++..... ..+.. |+| +++.|+..+.+....+|.. .+.|
T Consensus 98 ~~~~~~l~~~d~~~~~~~~~~-~~~~~------~~~--~g~~l~~~~~~~~~~~~~~-------------------~~~~ 149 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQVIY-TVDEE------WKG--YGTWVANSDCTKLVGIEIL-------------------KRDW 149 (396)
T ss_dssp EETTTEEEEEETTTCCEEEEE-ECCTT------EEE--EEEEEECTTSSEEEEEEEE-------------------GGGC
T ss_pred EEcCCcEEEEECCCCCcEEEE-ecccc------cCC--CCCEEEeccCCcccccccc-------------------cccc
Confidence 999899999999888764443 33332 778 8888888777655554431 2346
Q ss_pred cCCCCeEEEEe-----cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC-CCCcEEEEecCC------C
Q 012712 159 EPGSPHVFYTC-----GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------E 226 (458)
Q Consensus 159 ~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g 226 (458)
+|++.. ++.. ..+..|.+||+.+++...... ....+..+.|+| + +..|+..+.+ .
T Consensus 150 spdg~~-~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-----------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~ 216 (396)
T 3c5m_A 150 QPLTSW-EKFAEFYHTNPTCRLIKVDIETGELEVIHQ-----------DTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDA 216 (396)
T ss_dssp CCCCSH-HHHHHHHHTCCCEEEEEEETTTCCEEEEEE-----------ESSCEEEEEEETTE-EEEEEEEECSCSSSCSC
T ss_pred CCCCcc-eeeeeeccCCCcceEEEEECCCCcEEeecc-----------CCcccccceECCCC-CCEEEEEecCCCCCCCc
Confidence 788843 3333 456789999999887654432 333578899999 5 5655554433 3
Q ss_pred eEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEEEEec-C---Cc--EEEEEccCCCCCCCCC
Q 012712 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELLVSYN-D---EF--IYLFTQDMGLGPNPPP 299 (458)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~---~~--i~i~~~~~~~~~~~~~ 299 (458)
.|.+||+...+. ..+.... ...+..++|+|+|+.|+..+ + .. |++||+.++..
T Consensus 217 ~l~~~d~~~~~~---------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~----- 276 (396)
T 3c5m_A 217 RMWLVNEDGSNV---------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN----- 276 (396)
T ss_dssp CCEEEETTSCCC---------------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-----
T ss_pred eEEEEECCCCce---------------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-----
Confidence 688888865431 1111111 23578899999999776654 2 13 99999876321
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEec----------------
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGS---------------- 362 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~---------------- 362 (458)
..+..... .. +.| +| ||+++++++
T Consensus 277 ----------------------------------~~l~~~~~---~~-~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 277 ----------------------------------EEVMVMPP---CS-HLM-SNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp ----------------------------------EEEEECCS---EE-EEE-ECSSSSEEEEEECCC----------CCC
T ss_pred ----------------------------------EEeeeCCC---CC-CCc-cCCCCceEEEecCCcceeeccccccccC
Confidence 11111111 12 666 88 999888754
Q ss_pred CCCeEEEEEecCCeEEEEeecCCc-----------eeeEEEecCCCCeEEEeec-CCcEEEec--CCccccc
Q 012712 363 DCGRIFIWKKKGGELIRVIEADRH-----------VVNCIEPHPHSTVLASSGI-ESDIKILT--PNAADRA 420 (458)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-d~~i~iw~--~~~~~~~ 420 (458)
.+..|++||+.+++.. .+..+.. .+..++|+|||+.|+.++. ++...||. +.+++..
T Consensus 318 ~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred CCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 3478999999887653 4444443 2567899999998887664 55555554 4454443
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.87 E-value=1.1e-20 Score=180.96 Aligned_cols=296 Identities=11% Similarity=0.042 Sum_probs=189.0
Q ss_pred EeecCCCceEEEEEecCCCEEEEe--cCCCeEEEEECCCcceeeeeccCCCccee---------EEEEc--cCCCCeE-E
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISG--SDDRRVILWDWKTERVKLSFHSGHNDNVF---------QAKIM--PFTDDRS-I 121 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~---------~~~~~--~~~~~~~-l 121 (458)
.+.+|...|..++|++++-++++. +.++...||....+.....+ ..|...+. ...|+ | |++. |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SP--Dg~~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRP--AGGPLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCS--SSSCEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeec--CCCeEE
Confidence 356799999999999887777777 66889999986444444444 45655655 56666 8 9998 7
Q ss_pred EEEcC-CCcEEEeecc--c-ccceeeeeccc-----cccceEEEEEcCCCCeEEEEecCC----------CeEEEEeCCC
Q 012712 122 VTCAA-DGQVRHAQIL--E-RGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGED----------GLVQHFDLRT 182 (458)
Q Consensus 122 ~s~~~-dg~i~vw~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~ 182 (458)
+.++. +..|.++++. . +. ... +.. |...+..++|+|+| +.|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-~~~--l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-PRP--LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-CEE--CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEECCCCeEEEEcCCCCCCCC-CEe--ccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 76654 5667777765 2 33 222 444 66788999999999 566666665 5899999987
Q ss_pred ------CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--------CeEEEEecC-CCccCCCccCCCC
Q 012712 183 ------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIR-KYKWDGSTDFGQP 247 (458)
Q Consensus 183 ------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~~~~~~~~ 247 (458)
++....... +...+..++|+|| +++|+.++.+ ..|++||+. +++...
T Consensus 171 ~~~~~~~~~~~l~~~----------~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~------- 232 (662)
T 3azo_A 171 SAAADRSAVRELSDD----------AHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD------- 232 (662)
T ss_dssp TTTTCGGGSEESSCS----------CSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE-------
T ss_pred CccccCCceeEEEec----------CCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc-------
Confidence 443222100 2235677899998 6777766644 379999998 441100
Q ss_pred CCCcCCCccccccccceeEEEeCCCCcEEEEecC-C--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
...+...+...+..++|+|||++++++.. + .|++|++.++.....
T Consensus 233 -----~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l--------------------------- 280 (662)
T 3azo_A 233 -----TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL--------------------------- 280 (662)
T ss_dssp -----EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES---------------------------
T ss_pred -----cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec---------------------------
Confidence 12233334567899999999997766663 4 466666544321100
Q ss_pred CCcccccCceeecCccc-----e-eeeeEEEEecCCCcEEEEecCCCeEEEEEe--cCCeEEEEeecCCceeeEE-EecC
Q 012712 325 ANTDVRIAPQVYKGHRN-----C-VTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELIRVIEADRHVVNCI-EPHP 395 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~-----~-~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~-~~s~ 395 (458)
...+.. . ..+..++| +|+++++++++. +.++||.+ .+++ +..+..|...+..+ ++++
T Consensus 281 -----------~~~~~~~~~p~w~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~ 346 (662)
T 3azo_A 281 -----------CRREEEFAGPLWTPGMRWFAP-LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG 346 (662)
T ss_dssp -----------SCCSSBSSCCCCSTTCCSEEE-CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET
T ss_pred -----------ccccccccCccccccCceEeE-eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCC
Confidence 000000 0 00345677 899999999998 99999944 4454 67787787778777 5544
Q ss_pred CCCeEEEeecCC--cEEEecCCccccccc
Q 012712 396 HSTVLASSGIES--DIKILTPNAADRATL 422 (458)
Q Consensus 396 ~~~~l~s~~~d~--~i~iw~~~~~~~~~~ 422 (458)
+.-++++++.+. .|.++++.+++...+
T Consensus 347 ~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 347 TRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp TEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 333444555554 455556666655433
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.87 E-value=8.1e-20 Score=175.00 Aligned_cols=290 Identities=11% Similarity=0.057 Sum_probs=189.7
Q ss_pred cCCCcceeEEEEccCCCCeEEEEE--cCCCcEEEeecccccceeeeeccccccceE---------EEEEc--CCCCe-EE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTC--AADGQVRHAQILERGGVETKLLGKHQGRAH---------KLAIE--PGSPH-VF 166 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~l 166 (458)
.+|...+..++|++ +.-++++. +.++...||....+..... +..+...+. ...|+ ||+.. ++
T Consensus 20 ~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 20 ASRSGRPACVGAVG--DEVWWVAPRPAEAGRATLVRRRADGAEES--ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHTCSCCEEEEEET--TEEEEEEEETTTTTEEEEEEECTTSCEEE--SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred hhcCCccceeEEcC--CeEEEEecCcccCCcEEEEEECCCCCcce--eCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 56888999999998 87777776 6688899999744443333 555655555 55565 99965 45
Q ss_pred EEecCCCeEEEEeCC--C-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----------CeEEEEec
Q 012712 167 YTCGEDGLVQHFDLR--T-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----------EYTRLYDI 233 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~i~d~ 233 (458)
++...+..|.++++. . ++.. .+..... .. +...+..++|+|| ++.|++++.+ ..|++||+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~---~~--~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPR-PLTPVSA---VG--GGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCE-ECSCCCC---ST--TCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred EEECCCCeEEEEcCCCCCCCCCE-eccCCcc---CC--CCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 555456778888776 3 4322 2221000 00 1235789999998 6788877766 57999999
Q ss_pred CC------CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC--------cEEEEEcc-CCCCCCC
Q 012712 234 RK------YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--------FIYLFTQD-MGLGPNP 297 (458)
Q Consensus 234 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--------~i~i~~~~-~~~~~~~ 297 (458)
.+ ++. ..+...+...+..++|+|||+.|+..+ +. .|++||+. ++..
T Consensus 169 ~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~--- 230 (662)
T 3azo_A 169 DGSAAADRSAV---------------RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF--- 230 (662)
T ss_dssp TSTTTTCGGGS---------------EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---
T ss_pred CCCccccCCce---------------eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---
Confidence 87 331 111102345678899999999998765 32 59999987 3200
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC--eEEEEEecCC
Q 012712 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGG 375 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~ 375 (458)
........++.. .+..+.| +|||+++++++.++ .|++||+.++
T Consensus 231 --------------------------------~~~~~l~~~~~~--~~~~~~~-spdg~l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 231 --------------------------------ADTRTLLGGPEE--AIAQAEW-APDGSLIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp --------------------------------EEEEEEEEETTB--CEEEEEE-CTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred --------------------------------cccEEeCCCCCc--eEcceEE-CCCCeEEEEECCCCCeEEEEEECCCC
Confidence 011122222233 3778888 99999888888888 6666776666
Q ss_pred eEEEEeecCCce--------eeEEEecCCCCeEEEeecCCcEEEe--cCCcccccccccccccEEEE-EEecCCcEEEee
Q 012712 376 ELIRVIEADRHV--------VNCIEPHPHSTVLASSGIESDIKIL--TPNAADRATLPTNIEQVCFS-IYSADYWWSKSQ 444 (458)
Q Consensus 376 ~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~d~~i~iw--~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~ 444 (458)
+.......+... +..++|+|+++++++++. +.++|| ++.+++...+..+...+..+ +++++..+++++
T Consensus 276 ~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~ 354 (662)
T 3azo_A 276 AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAA 354 (662)
T ss_dssp CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEE
T ss_pred ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEc
Confidence 654444433322 567899999999999998 999999 66666666777776677766 444444555566
Q ss_pred ecCCceEEEEE
Q 012712 445 NFSCSILLFEW 455 (458)
Q Consensus 445 ~~d~~i~~w~~ 455 (458)
+.+....+|.+
T Consensus 355 ~~~~~~~i~~~ 365 (662)
T 3azo_A 355 SPRTAYEVVEL 365 (662)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCCCCEEEEE
Confidence 77766667654
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=1.2e-18 Score=151.31 Aligned_cols=264 Identities=14% Similarity=0.112 Sum_probs=174.2
Q ss_pred CCceEEEEEecCCCEEEEecCC------------------------CeEEEEECCCcceeeeeccCCCcceeEEEEccCC
Q 012712 61 RGCVNTVSFNTDGDILISGSDD------------------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 116 (458)
-+.+.+++++|+|+++++...+ +.|.+||..+++....+..++-.....++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 4679999999999999888777 47999999888887666445556789999999
Q ss_pred CCeEEEEEcCCCcEEEeeccccc-ceeeeec-------cccccceEEEEEcC-CCCeEEEEec-CCCeEEEEeCCCCCcc
Q 012712 117 DDRSIVTCAADGQVRHAQILERG-GVETKLL-------GKHQGRAHKLAIEP-GSPHVFYTCG-EDGLVQHFDLRTGAAT 186 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~~ 186 (458)
+++++++...++.|++|+..... .+....- ..+......++++| ++ .++++.+ .++.|++|| ..++..
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCCEE
Confidence 99988888889999999975442 2222100 23445688999999 56 7777776 689999999 455554
Q ss_pred ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (458)
..+................+..++++|+++.++++...++.|++||..+++...... ...+...+..
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~-------------~~~~~~~~~~ 245 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK-------------HASFGRNVFA 245 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------------CTTTTTCEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-------------ccccCCCcce
Confidence 443211100000000122356777777645666666667777777766443211100 0001112223
Q ss_pred EEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712 267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (458)
Q Consensus 267 ~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (458)
++++| +..
T Consensus 246 ~~~~p-g~~----------------------------------------------------------------------- 253 (329)
T 3fvz_A 246 ISYIP-GFL----------------------------------------------------------------------- 253 (329)
T ss_dssp EEEET-TEE-----------------------------------------------------------------------
T ss_pred eeecC-CEE-----------------------------------------------------------------------
Confidence 33333 110
Q ss_pred EEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee---cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 347 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
+ ..+|+..++...+.+|++|+..+++.+..+. ++...+..++++|+|.++++...++.|++|++...
T Consensus 254 ---~-~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 254 ---F-AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ---E-EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ---E-EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 0 1134434444556789999999999988873 56667899999999988888888999999998653
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=2.6e-18 Score=146.47 Aligned_cols=244 Identities=12% Similarity=0.159 Sum_probs=168.8
Q ss_pred ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-CCCCcEEEEecC-C
Q 012712 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNANLFAVAGS-D 225 (458)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~-d 225 (458)
++-..+.+++++|++ .++++...++.|.+||.. ++....+..... ..+ +...+..++++ ++ ++++++... +
T Consensus 27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--~~~--~~~~p~~i~~~~~~-g~l~v~~~~~~ 99 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGK--RDS--QLLYPNRVAVVRNS-GDIIVTERSPT 99 (286)
T ss_dssp TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSS--STT--CBSSEEEEEEETTT-TEEEEEECGGG
T ss_pred CccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCC--Ccc--cccCceEEEEEcCC-CeEEEEcCCCC
Confidence 344668899999998 678888889999999987 444433321110 001 22357889994 55 566666543 7
Q ss_pred CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcc
Q 012712 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVS 304 (458)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~ 304 (458)
+.|.+||. +++.... +...+...+..++++|+|+++++.. ++.|++|+....
T Consensus 100 ~~i~~~d~-~g~~~~~--------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------------ 152 (286)
T 1q7f_A 100 HQIQIYNQ-YGQFVRK--------------FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------------ 152 (286)
T ss_dssp CEEEEECT-TSCEEEE--------------ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------------
T ss_pred CEEEEECC-CCcEEEE--------------ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------------
Confidence 89999994 4332111 1112234678999999999888766 457999985431
Q ss_pred ccccccccCCCCccccCCCCCCcccccCceeec--CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 382 (458)
....+. .+.. .+..+++ +++|+++++...++.|++||. +++.+..+.
T Consensus 153 ---------------------------~~~~~~~~~~~~--~p~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 201 (286)
T 1q7f_A 153 ---------------------------VLHKFGCSKHLE--FPNGVVV-NDKQEIFISDNRAHCVKVFNY-EGQYLRQIG 201 (286)
T ss_dssp ---------------------------EEEEEECTTTCS--SEEEEEE-CSSSEEEEEEGGGTEEEEEET-TCCEEEEES
T ss_pred ---------------------------EEEEeCCCCccC--CcEEEEE-CCCCCEEEEECCCCEEEEEcC-CCCEEEEEc
Confidence 112221 1212 3678888 999998888888999999997 566666665
Q ss_pred cC--CceeeEEEecCCCCeEEEeecCC-cEEEecCCccccccccccc--ccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712 383 AD--RHVVNCIEPHPHSTVLASSGIES-DIKILTPNAADRATLPTNI--EQVCFSIYSADYWWSKSQNFSCSILLFEWLV 457 (458)
Q Consensus 383 ~~--~~~v~~~~~s~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 457 (458)
.+ ...+..++++|+|+++++...++ .|.+|+........+..+. ..+.+++++|+|+++++ +.|+.|++|++..
T Consensus 202 ~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 202 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 43 35688999999999888887776 9999997654444443332 24789999999988777 6799999999853
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.84 E-value=1.5e-17 Score=145.21 Aligned_cols=276 Identities=14% Similarity=0.124 Sum_probs=182.7
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
..+.|++++..++..+.++.++.|. ++.. ..+..+...+.+++|+|+|++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~~~~~~~~~~~~~g~l~~~~~~ 64 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTIT---AEPW---------------------LEISKKGLQLEGLNFDRQGQLFLLDVF 64 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---------------------EEEESSCCCEEEEEECTTSCEEEEETT
T ss_pred ceeeecCCccceeEEeecccCcccc---ccee---------------------EEEeccCccccCcEECCCCCEEEEECC
Confidence 4567888888777777788888882 2222 345667777899999999998888888
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeecccccceeeeeccccccceEEEE
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~ 157 (458)
++.|.+||.++++..... ..+...+.+++++| +++++++...+ +.|.+||..++..........+...+..++
T Consensus 65 ~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~ 141 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRPF-VSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV 141 (333)
T ss_dssp TCEEEEECTTTCCEEEEE-ECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE
T ss_pred CCEEEEEeCCCCcEEEEe-eCCCCCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE
Confidence 999999999887754433 34667899999999 99888877766 689999987765432211122445789999
Q ss_pred EcCCCCeEEEEecC------CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712 158 IEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 158 ~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
++|++ .++++... .+.|..+|..+++...... ....+..++|+|++..++++...++.|.+|
T Consensus 142 ~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 142 FDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------NISVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp ECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred ECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeec-----------CCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 99998 56665543 3556666665544322211 122467788888732344455567788888
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
|+.+... .+..+. + .+
T Consensus 210 d~~~~g~------------------------~~~~~~--~---~~----------------------------------- 225 (333)
T 2dg1_A 210 ALEDDGV------------------------TIQPFG--A---TI----------------------------------- 225 (333)
T ss_dssp EECTTSS------------------------SEEEEE--E---EE-----------------------------------
T ss_pred EecCCCc------------------------Cccccc--c---eE-----------------------------------
Confidence 8753210 000000 0 00
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc-----
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH----- 386 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----- 386 (458)
...+.++. .+..+++ +++|+++++...++.|.+||. +++.+..+..+..
T Consensus 226 ---------------------~~~~~~~~---~~~~i~~-d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~ 279 (333)
T 2dg1_A 226 ---------------------PYYFTGHE---GPDSCCI-DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM 279 (333)
T ss_dssp ---------------------EEECCSSS---EEEEEEE-BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred ---------------------EEecCCCC---CCCceEE-CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccc
Confidence 00011111 2566777 999998887777899999998 5777777765443
Q ss_pred -eeeEEEecCCCCeEEEeecC
Q 012712 387 -VVNCIEPHPHSTVLASSGIE 406 (458)
Q Consensus 387 -~v~~~~~s~~~~~l~s~~~d 406 (458)
.+.+++|+||++.|+.++.+
T Consensus 280 ~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 280 LRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CBCCEEEECTTSCEEEEEEEC
T ss_pred cCcceEEECCCCCEEEEEeCc
Confidence 68999999998777655554
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=1.8e-17 Score=141.28 Aligned_cols=245 Identities=11% Similarity=0.101 Sum_probs=169.8
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec----cccccceEEEEE-cCCCCeEEEEecC-CCeE
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL----GKHQGRAHKLAI-EPGSPHVFYTCGE-DGLV 175 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~-~~~~~~~l~s~~~-dg~i 175 (458)
++-..+.+++++| +++++++...++.|.+||.. ++....... ..+...+..+++ .+++ .++++... ++.|
T Consensus 27 g~~~~p~~v~~~~--~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNA--QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECT--TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEE
T ss_pred CccCCCceEEECC--CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEE
Confidence 4556789999999 99988888889999999976 443332111 134457889999 4666 66666643 7899
Q ss_pred EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (458)
.+|| .+++....+... ....+.+++++|+ ++++++...++.|.+||..... ....
T Consensus 103 ~~~d-~~g~~~~~~~~~---------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~-~~~~------------- 157 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGAT---------ILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNV-LHKF------------- 157 (286)
T ss_dssp EEEC-TTSCEEEEECTT---------TCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCE-EEEE-------------
T ss_pred EEEC-CCCcEEEEecCc---------cCCCceEEEEeCC-CCEEEEECCCCEEEEEcCCCCE-EEEe-------------
Confidence 9999 555554443211 1225789999998 5777777788999999965321 1110
Q ss_pred cccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (458)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (458)
....+...+..++++|+|+++++.. ++.|++|+.... ...
T Consensus 158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------------------------------------~~~ 198 (286)
T 1q7f_A 158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------------------------------------YLR 198 (286)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------------------------------------EEE
T ss_pred CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---------------------------------------EEE
Confidence 0012234678999999999888766 568999997431 122
Q ss_pred eecCccceeeeeEEEEecCCCcEEEEecCCC-eEEEEEecCCeEEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEE
Q 012712 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKI 411 (458)
Q Consensus 335 ~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~i 411 (458)
.+..+.....+..+++ +++|+++++...++ .|++|+. +++.+..+..+.. .+.+++++|+|+++++ +.|++|++
T Consensus 199 ~~~~~g~~~~p~~i~~-d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v 275 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGI-NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI 275 (286)
T ss_dssp EESCTTTSCSEEEEEE-CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEE
T ss_pred EEccCCccCCCcEEEE-CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEE
Confidence 2222211113678888 99999888887776 9999995 6777777765543 4779999999987777 57999999
Q ss_pred ecCCcc
Q 012712 412 LTPNAA 417 (458)
Q Consensus 412 w~~~~~ 417 (458)
|++...
T Consensus 276 ~~~~~~ 281 (286)
T 1q7f_A 276 YRYVQL 281 (286)
T ss_dssp EECSCC
T ss_pred EEcccc
Confidence 997653
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.83 E-value=5.3e-18 Score=149.03 Aligned_cols=268 Identities=13% Similarity=0.146 Sum_probs=172.3
Q ss_pred CceEEEEEecCCCEEEEec---------CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---C-
Q 012712 62 GCVNTVSFNTDGDILISGS---------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G- 128 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g- 128 (458)
..+..+++ ||++++... .++.|.+||+.+++.. .+ ..+..++|+| ||+.|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----~~~~~~~~Sp--Dg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----ENATMPRISP--DGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----ESCEEEEECT--TSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----ccCCCeEECC--CCCEEEEEEeccCCCc
Confidence 45677777 888887642 2568999999887653 22 5688999999 99999987754 3
Q ss_pred -cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC---------------------------CCeEEEEeC
Q 012712 129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---------------------------DGLVQHFDL 180 (458)
Q Consensus 129 -~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------------------dg~i~iwd~ 180 (458)
.|.+|++.+++.... ..+.. +..++|+|++.. |+.++. ...|.+||+
T Consensus 85 ~~l~~~~~~~g~~~~l---~~~~~-~~~~~wspdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 85 SEIWVADLETLSSKKI---LEAKN-IRSLEWNEDSRK-LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEEEEETTTTEEEEE---EEESE-EEEEEECTTSSE-EEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred ceEEEEECCCCceEEE---EcCCC-ccceeECCCCCE-EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 377778876554332 22334 899999999954 454442 257999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-------eEEEEecCCCccCCCccCCCCCCCcCC
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-------YTRLYDIRKYKWDGSTDFGQPADYFCP 253 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (458)
.+++....+.. . .+..++|+|+ + +++++..++ ...+|.+.+++.
T Consensus 160 ~~~~~~~~l~~-----------~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--------------- 210 (347)
T 2gop_A 160 ESEEVIEEFEK-----------P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWEDGKE--------------- 210 (347)
T ss_dssp TTTEEEEEEEE-----------E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEETTEE---------------
T ss_pred CCCeEEeeecC-----------C-CcccccCCCC-e-EEEEEecccccccccccccEEEeCCCce---------------
Confidence 88765333331 1 4678899998 5 777665432 334444433321
Q ss_pred CccccccccceeEEEeCCCCcEEEEec-CC--------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DE--------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
..+.. + ..+..+ +|+|+.|+..+ ++ .|++|| ++
T Consensus 211 ~~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-------------------------------- 252 (347)
T 2gop_A 211 EKMFE-K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-------------------------------- 252 (347)
T ss_dssp EEEEE-E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--------------------------------
T ss_pred EEecc-C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--------------------------------
Confidence 11111 2 334443 89999887665 21 477776 31
Q ss_pred CCcccccCceeecCccceeeeeE-EEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712 325 ANTDVRIAPQVYKGHRNCVTVKG-VNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 403 (458)
........+.. .+.. +.| + |+ ++++++.++.++|| +.+++... +..+...|.+++|+| .+++++
T Consensus 253 ------~~~~l~~~~~~--~~~~~~~~-s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 253 ------EVMGILDEVDR--GVGQAKIK-D-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp ------CEEESSTTCCS--EEEEEEEE-T-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEE
T ss_pred ------ceEeccccCCc--ccCCccEE-c-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEE
Confidence 11122223333 2555 777 8 88 88899999999999 88666544 444577899999999 677777
Q ss_pred ecCCcE-EEecCCcccccccccccc
Q 012712 404 GIESDI-KILTPNAADRATLPTNIE 427 (458)
Q Consensus 404 ~~d~~i-~iw~~~~~~~~~~~~~~~ 427 (458)
+.++.. .||.+. ++...+..+..
T Consensus 318 ~~~~~~~~l~~~~-g~~~~lt~~n~ 341 (347)
T 2gop_A 318 ETATRLRELFTWD-GEEKQLTDYND 341 (347)
T ss_dssp ECSSSCCEEEEES-SSEEECCCTTS
T ss_pred cCCCChHHheEeC-CcEEEeccccH
Confidence 776654 777665 55445555443
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=1e-17 Score=145.55 Aligned_cols=248 Identities=13% Similarity=0.085 Sum_probs=174.6
Q ss_pred ccceEEEEEcCCCCeEEEEecCC------------------------CeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 150 QGRAHKLAIEPGSPHVFYTCGED------------------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
-..+.+++++|+| +++++...+ +.|.+||..+++....+... ....
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------~~~~ 92 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN---------LFYL 92 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT---------TCSS
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC---------ccCC
Confidence 3578999999999 677777666 47999999888765433211 2225
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec--C
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN--D 281 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~ 281 (458)
+..++++|+ ++++++...++.|++||..... .... ++... .......+......++++| ++.++++.+ +
T Consensus 93 p~gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~--~~~~~----~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 93 PHGLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLI--LGRSM----QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp EEEEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEE--ESBTT----BCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred ceEEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEE--ecccC----CCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 789999998 6788888889999999986432 1110 00000 0000022344688999999 888888875 5
Q ss_pred CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec----------CccceeeeeEEEEe
Q 012712 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK----------GHRNCVTVKGVNFF 351 (458)
Q Consensus 282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~ 351 (458)
+.|++|+... . ....+. ++.. ....+++
T Consensus 166 ~~I~~~~~~g-~--------------------------------------~~~~~~~~g~~~~~~~~~~~--~p~gia~- 203 (329)
T 3fvz_A 166 SRIVQFSPSG-K--------------------------------------FVTQWGEESSGSSPRPGQFS--VPHSLAL- 203 (329)
T ss_dssp CEEEEECTTS-C--------------------------------------EEEEECEECCSSSCCTTEES--CEEEEEE-
T ss_pred CeEEEEcCCC-C--------------------------------------EEEEeccCCCCCCCCCcccC--CCcEEEE-
Confidence 5899998432 1 111111 1111 2578888
Q ss_pred cCC-CcEEEEecCCCeEEEEEecCCeEEEEee--cCCceeeEEEecC------CCCeEEEeecCCcEEEecCCccccccc
Q 012712 352 GPK-CEYVVSGSDCGRIFIWKKKGGELIRVIE--ADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAADRATL 422 (458)
Q Consensus 352 s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~------~~~~l~s~~~d~~i~iw~~~~~~~~~~ 422 (458)
+|+ ++++++...+++|++|+..+++.+..+. .+...+..++++| +|+.+++...+..|++|++.+++....
T Consensus 204 d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 204 VPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 998 7888888889999999998899988884 3556788999999 444444444566999999988877654
Q ss_pred ----ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 423 ----PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 423 ----~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
..+......++++|||.++++...++.|++|+.-
T Consensus 284 ~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 284 FKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3556669999999999888888899999999864
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=1.1e-17 Score=146.14 Aligned_cols=268 Identities=9% Similarity=0.018 Sum_probs=178.7
Q ss_pred cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC
Q 012712 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (458)
..|.++.|+| ++..++..+.++.++.|. .+.... +..+...+.+++|+|++ .+++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSG--KSNSAVPIISESELQTIT---AEPWLE--ISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCG--GGGCSSCCCCGGGSCEEE---CEEEEE--EESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecC--CccceeEEeecccCcccc---cceeEE--EeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc
Confidence 4577888998 887777777788899992 222222 44555677899999998 677788889999999998876
Q ss_pred ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----CeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
....... ....+.+++++|+ ++++++...+ +.|.+||..+.+..... .....
T Consensus 78 ~~~~~~~----------~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-------------~~~~~ 133 (333)
T 2dg1_A 78 IKRPFVS----------HKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDII-------------EDLST 133 (333)
T ss_dssp EEEEEEC----------SSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEE-------------CSSSS
T ss_pred EEEEeeC----------CCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-------------ccCcc
Confidence 5443311 2235899999998 5677766655 68999998776421000 00112
Q ss_pred ccceeEEEeCCCCcEEEEecC-------CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712 261 QVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~-------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
...+..++++|+|+++++... +.|+.++..++ ..
T Consensus 134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~---------------------------------------~~ 174 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---------------------------------------TV 174 (333)
T ss_dssp CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---------------------------------------CE
T ss_pred CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC---------------------------------------EE
Confidence 356889999999998887663 23555554321 11
Q ss_pred eeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecC-CeEEEE--------eecCCceeeEEEecCCCCeEEEe
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG-GELIRV--------IEADRHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~--------~~~~~~~v~~~~~s~~~~~l~s~ 403 (458)
..+..... ....++| +|+|++|+ +.+.++.|++|++.+ ++.+.. +.++ ..+..++++++|+++++.
T Consensus 175 ~~~~~~~~--~~~~i~~-~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~ 250 (333)
T 2dg1_A 175 TPIIQNIS--VANGIAL-STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM 250 (333)
T ss_dssp EEEEEEES--SEEEEEE-CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE
T ss_pred EEeecCCC--cccceEE-CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE
Confidence 11111111 2567888 99998665 445678999999963 332221 1222 467889999999988888
Q ss_pred ecCCcEEEecCCcccccccccccc------cEEEEEEecCCcEEEeeecC
Q 012712 404 GIESDIKILTPNAADRATLPTNIE------QVCFSIYSADYWWSKSQNFS 447 (458)
Q Consensus 404 ~~d~~i~iw~~~~~~~~~~~~~~~------~v~~~~~s~d~~~l~s~~~d 447 (458)
..++.|.+|+.+......+..+.. .+.+++|+||+..|+.++.+
T Consensus 251 ~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 251 YGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 778999999986443333322222 58899999998766554544
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.81 E-value=2.2e-17 Score=158.43 Aligned_cols=252 Identities=8% Similarity=-0.031 Sum_probs=160.6
Q ss_pred cCCCceEEEEEecCCCEEE-----EecCCCeEEEEECCCccee-eeeccCCCcceeEEEEccCCCCeEEEEEcCCCc---
Q 012712 59 KHRGCVNTVSFNTDGDILI-----SGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ--- 129 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~-----s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~--- 129 (458)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+ ...... .....++|+| |++.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wsp--Dg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTP--DSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEec--CCCEEEEEEecCCCCC
Confidence 5666899999999999999 4555679999999998865 221111 1126899999 9999999988766
Q ss_pred ----------EEEeecccccce--eeeeccccccceEEEEEcCCCCeEEEEecCCC----eEEEEeCCCCCccceeeecc
Q 012712 130 ----------VRHAQILERGGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRP 193 (458)
Q Consensus 130 ----------i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~ 193 (458)
|++|++.++... .......+...+..+.|+|+|.. |+..+.++ .|++|+..+++......
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--- 269 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY-LFVYILRGWSENDVYWKRPGEKDFRLLVK--- 269 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC-EEEEEEETTTEEEEEEECTTCSSCEEEEE---
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE-EEEEEeCCCCceEEEEEcCCCCceEEeec---
Confidence 999999877632 22223345567889999999955 44444443 56676655444322221
Q ss_pred cCCCCcceeecceEEEEECCCCCcEEEEec---CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC
Q 012712 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (458)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (458)
....+....+ +++. +++... .++.|.+||+.+.+..
T Consensus 270 --------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~------------------------------- 308 (695)
T 2bkl_A 270 --------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA------------------------------- 308 (695)
T ss_dssp --------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-------------------------------
T ss_pred --------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-------------------------------
Confidence 1112333444 4433 444333 2456666666443200
Q ss_pred CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (458)
Q Consensus 271 ~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (458)
....+..+.....+..+++
T Consensus 309 -------------------------------------------------------------~~~~l~~~~~~~~l~~~~~ 327 (695)
T 2bkl_A 309 -------------------------------------------------------------SWKEIVPEDSSASLLSVSI 327 (695)
T ss_dssp -------------------------------------------------------------GCEEEECCCSSCEEEEEEE
T ss_pred -------------------------------------------------------------CCeEEecCCCCCeEEEEEE
Confidence 0011111110112566777
Q ss_pred ecCCCcEEEEecCCCeEEEEEec-CCeEEEEeecC-CceeeEEEecCCCCeEEE----eecCCcEEEecCCccccccc
Q 012712 351 FGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEAD-RHVVNCIEPHPHSTVLAS----SGIESDIKILTPNAADRATL 422 (458)
Q Consensus 351 ~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s----~~~d~~i~iw~~~~~~~~~~ 422 (458)
+ ++.++++...|+..+||.+. +++....+..+ .+.+..++++|+++.|+. ....++|++||+.+++...+
T Consensus 328 -~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 328 -V-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp -E-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -E-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 5 67888899999988888765 46666777655 677889999999987773 33457899999988764433
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=1.6e-15 Score=130.09 Aligned_cols=285 Identities=11% Similarity=0.032 Sum_probs=192.3
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 136 (458)
+..+...+.+++++++|+++++...++.|.+||.. ++........+...+.++++.+ ++.++++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC
Confidence 34556789999999999988877778899999988 5543322233457799999999 99888887778889999975
Q ss_pred cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
++ .....+......+..+++.|++ .++++...++.|..||. +++... +.... ....+..++++++ +
T Consensus 87 -g~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~--------~~~~~~~i~~~~~-g 152 (299)
T 2z2n_A 87 -GI-IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIRE-YELPN--------KGSYPSFITLGSD-N 152 (299)
T ss_dssp -SC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-S
T ss_pred -Cc-EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEE-ecCCC--------CCCCCceEEEcCC-C
Confidence 32 2222233345578899999988 67777777889999998 554322 21110 1225789999997 5
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~ 295 (458)
++.++...++.|..||. +++.... ........+..++++++|.++++.. .+.|..|+. ++..
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~--------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~- 215 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEF--------------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI- 215 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEE--------------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEe--------------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-
Confidence 67776667789999998 5432110 0111234578999999999777765 557999987 4210
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 375 (458)
.......+.. .+.++++ +++|+++++...++.|..||. ++
T Consensus 216 ------------------------------------~~~~~~~~~~--~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g 255 (299)
T 2z2n_A 216 ------------------------------------TEFKIPTPNA--RPHAITA-GAGIDLWFTEWGANKIGRLTS-NN 255 (299)
T ss_dssp ------------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEEET-TT
T ss_pred ------------------------------------EEEECCCCCC--CceeEEE-CCCCCEEEeccCCceEEEECC-CC
Confidence 0001111112 3678888 999997777667899999998 55
Q ss_pred eEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 376 ELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 376 ~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
+.... +..+...+.++++ ++++++++.. .+.|..+++.++
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 43322 2344567899999 8888777655 566777776554
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.80 E-value=2.4e-17 Score=142.11 Aligned_cols=306 Identities=12% Similarity=0.036 Sum_probs=199.5
Q ss_pred EEEecCCCEEEEecC-----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEE
Q 012712 67 VSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVR 131 (458)
Q Consensus 67 ~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~ 131 (458)
....|+++.++.... ++.|.+.|..+++.+..+..+.. + .++++| |++++++++ .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P--~va~sp--DG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P--NPVVAD--DGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C--cEEECC--CCCEEEEEcccccccccCCCCCEEE
Confidence 445689988887755 57999999999999888854433 3 499999 999988775 357899
Q ss_pred Eeecccccceeeeeccc-----cccceEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 132 HAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
+||..+.+......+.. .......++++|+|+.++++.. .++.|.++|+.+++.+..+....
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g------------ 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------------ 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------------
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC------------
Confidence 99999988766543321 1124567999999955444443 36899999999998887775321
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccce-eEEEe-CCCCcEEEEecCC
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAF-SDQSELLVSYNDE 282 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-~~~~~~l~~~~~~ 282 (458)
+....|.+...+++.+.||.+.+.++.. ++..... . ........++ ....| .++|+++....++
T Consensus 181 --~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--~---------~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g 247 (386)
T 3sjl_D 181 --CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--T---------EVFHPEDEFLINHPAYSQKAGRLVWPTYTG 247 (386)
T ss_dssp --EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE--C---------CCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred --cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee--c---------ceeccccccccccceeEcCCCcEEEEeCCC
Confidence 1112243455677777888888888876 3321100 0 0000011111 12355 4788877766678
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee-----cCccceeeeeEEEEecCCCcE
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGPKCEY 357 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~s~~~~~ 357 (458)
.+++.|+........ .....+ .....+.....+++ +++++.
T Consensus 248 ~V~v~d~~~~~~~v~---------------------------------~~~~~~~~~~~~~g~~p~g~q~~a~-~~~~~~ 293 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFL---------------------------------PAVEALTEAERADGWRPGGWQQVAY-HRALDR 293 (386)
T ss_dssp EEEEEECTTSSCEEC---------------------------------CCEESSCHHHHHTTEEECSSSCEEE-ETTTTE
T ss_pred EEEEEECCCCcceee---------------------------------cceeccccccccccccCCCcceeeE-CCCCCe
Confidence 899999875421000 000000 00001111334666 889888
Q ss_pred EEEecC----------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEe-ecCCcEEEecCCcccccccccc
Q 012712 358 VVSGSD----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRATLPTN 425 (458)
Q Consensus 358 l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~d~~i~iw~~~~~~~~~~~~~ 425 (458)
++.... .++|.++|+.+++.++++... ..+..|++++|++ +|+++ ..++.|.++|..+++.......
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 887642 257999999999999988643 3688999999997 66654 4589999999999987755555
Q ss_pred cccEEEEEEecC
Q 012712 426 IEQVCFSIYSAD 437 (458)
Q Consensus 426 ~~~v~~~~~s~d 437 (458)
.+.-..+.+++|
T Consensus 373 ~~~p~~l~~s~d 384 (386)
T 3sjl_D 373 LGHGPQVITTAD 384 (386)
T ss_dssp CCSSCCEEEECC
T ss_pred CCCCceeEECCc
Confidence 555556667766
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.80 E-value=6.5e-17 Score=155.69 Aligned_cols=252 Identities=8% Similarity=-0.050 Sum_probs=160.9
Q ss_pred cCCCceEEEEEecCCCEEEEecCCC-----eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc----
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~---- 129 (458)
+|...+..++|||||++||.+..++ .|++||+.+++....... ...+..++|+| |++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH--DGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--CcccceEEEEe--CCCEEEEEEECCccccc
Confidence 4555788999999999999765433 899999999887654322 22367899999 9999999887765
Q ss_pred ------------EEEeecccccceeee--eccccccceEEEEEcCCCCeEEEEecC----CCeEEEEeCCC------CC-
Q 012712 130 ------------VRHAQILERGGVETK--LLGKHQGRAHKLAIEPGSPHVFYTCGE----DGLVQHFDLRT------GA- 184 (458)
Q Consensus 130 ------------i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~------~~- 184 (458)
|++|++.++...... ....|...+..+.|+|++..++++... +..|++||+.+ +.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 999999876532111 122345567899999999544444331 56899999876 32
Q ss_pred ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (458)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (458)
....+... ...+.. .|+|++..+++.+..+ +.|.+||+.+.+.
T Consensus 278 ~~~~l~~~----------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----------------------- 323 (710)
T 2xdw_A 278 KWVKLIDN----------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE----------------------- 323 (710)
T ss_dssp CCEEEECS----------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-----------------------
T ss_pred ceEEeeCC----------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-----------------------
Confidence 12222210 111222 3556533233332221 2355555433210
Q ss_pred cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712 262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (458)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
...+.+..+..
T Consensus 324 ---------------------------------------------------------------------~~~~~l~~~~~ 334 (710)
T 2xdw_A 324 ---------------------------------------------------------------------SKWKVLVPEHE 334 (710)
T ss_dssp ---------------------------------------------------------------------GGCEEEECCCS
T ss_pred ---------------------------------------------------------------------ccceeccCCCC
Confidence 00112222222
Q ss_pred eeeeeEEEEecCCCcEEEEecCCCe--EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe----ecCCcEEEecCC
Q 012712 342 CVTVKGVNFFGPKCEYVVSGSDCGR--IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS----GIESDIKILTPN 415 (458)
Q Consensus 342 ~~~i~~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~d~~i~iw~~~ 415 (458)
...+..++| ++++.++++...++. |++|++.+++.+..+..+.+.+..++++|+++.++.. ...++|.+||+.
T Consensus 335 ~~~~~~~~~-~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 335 KDVLEWVAC-VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp SCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CCeEEEEEE-EcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 113667777 778888888888885 5566766788888888888889999999999866533 235789999998
Q ss_pred ccc
Q 012712 416 AAD 418 (458)
Q Consensus 416 ~~~ 418 (458)
+++
T Consensus 414 tg~ 416 (710)
T 2xdw_A 414 KEE 416 (710)
T ss_dssp SSS
T ss_pred CCc
Confidence 776
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.80 E-value=9.6e-16 Score=134.46 Aligned_cols=292 Identities=13% Similarity=0.030 Sum_probs=188.1
Q ss_pred CCCCCCeEEEeeC--CC---cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 6 NNNNNKRARTSVD--KA---LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 6 ~~~~~~~l~~~~~--d~---~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
.+|+++++++... .. .|.++|..+++.+.+ +.....+ .++++|||++|+.+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~---------------------i~~g~~p--~i~~spDg~~lyv~n 84 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH---------------------VNGGFLP--NPVAAHSGSEFALAS 84 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE---------------------ecCCCCC--CeEECCCCCEEEEEe
Confidence 4578887777653 22 889999998876632 4433344 899999999999875
Q ss_pred ----------CCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCCeEEEEEcC--CCcEEEeeccccccee
Q 012712 81 ----------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVE 142 (458)
Q Consensus 81 ----------~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~ 142 (458)
.++.|.+||..+.+.+..+..+ +......++|+| |+++|+++.. ++.|.++| .+++...
T Consensus 85 ~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred ccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 3678999999988877665322 012345899999 9999998874 47899999 8876554
Q ss_pred e-eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc-eEEEEECCCCCcEEE
Q 012712 143 T-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN-LNAIAIDPRNANLFA 220 (458)
Q Consensus 143 ~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~ 220 (458)
. .... .++.+.|+++..+++.+.||.+.++|. +++............ ...+ .....+.++++.+++
T Consensus 162 ~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~ 229 (373)
T 2mad_H 162 QLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT-----AAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred EEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc-----CCcceeecceeEecCCEEEE
Confidence 3 2221 125566777677888889999999999 776653321100000 1111 123456666444444
Q ss_pred EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCC
Q 012712 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~ 300 (458)
+. ..+.+.+.|+........ ..............|.|.+
T Consensus 230 ~~-~~~~v~vid~~~~~~~v~-------------~~~~~~~~~~~~~~~~p~g--------------------------- 268 (373)
T 2mad_H 230 PV-YSGKILQADISAAGATNK-------------APIDALSGGRKADTWRPGG--------------------------- 268 (373)
T ss_pred Ec-CCceEEEEeccCCcceEe-------------eeeeecCCcccccceecCc---------------------------
Confidence 44 677888888865421000 0000000000011111111
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC----------CCeEEEE
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----------CGRIFIW 370 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~----------dg~i~iw 370 (458)
...+.+ +|+++.++.+.. .+.|.++
T Consensus 269 --------------------------------------------~~~~~~-s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 269 --------------------------------------------WQQVAY-LKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred --------------------------------------------eEeEEE-CCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 223445 888887776543 3589999
Q ss_pred EecCCeEEEEeecCCceeeEEEecCCCC-eEEEee-cCCcEEEecCCccccccc
Q 012712 371 KKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATL 422 (458)
Q Consensus 371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~~ 422 (458)
|+.+++.+.++.. ......++|+|||+ +++++. .++.|.++|..+++....
T Consensus 304 D~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 304 TGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9999999998864 33588999999999 777776 489999999999876644
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=2.5e-17 Score=144.73 Aligned_cols=255 Identities=8% Similarity=0.082 Sum_probs=166.9
Q ss_pred ceeEEEEccCCCCeEEEEEc---------CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC---C
Q 012712 106 NVFQAKIMPFTDDRSIVTCA---------ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---G 173 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g 173 (458)
.+..+++ ||+.++... .++.|.+|++.+++... + ..+..++|+|+|. .|+..+.+ +
T Consensus 16 ~~~~~~~----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l----~~~~~~~~SpDg~-~la~~~~~~~~~ 83 (347)
T 2gop_A 16 YLSDPRT----KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I----ENATMPRISPDGK-KIAFMRANEEKK 83 (347)
T ss_dssp EEEEEEE----ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E----ESCEEEEECTTSS-EEEEEEEETTTT
T ss_pred EcccceE----CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c----ccCCCeEECCCCC-EEEEEEeccCCC
Confidence 4555666 455555432 25678999988765422 3 5678899999995 45554432 3
Q ss_pred --eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---------------------------
Q 012712 174 --LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--------------------------- 224 (458)
Q Consensus 174 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--------------------------- 224 (458)
.|.+||+.+++...... ... +..++|+|+ ++.|+.++.
T Consensus 84 ~~~l~~~~~~~g~~~~l~~-----------~~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILE-----------AKN-IRSLEWNED-SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE-----------ESE-EEEEEECTT-SSEEEEEEECCCC---------CCCC---------C
T ss_pred cceEEEEECCCCceEEEEc-----------CCC-ccceeECCC-CCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 48888888876554433 222 789999998 566666653
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--------cEEEEEccCCCCCC
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--------FIYLFTQDMGLGPN 296 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------~i~i~~~~~~~~~~ 296 (458)
...|++||+.+++.. ..... . .+..++|+|+| +++++..+ ...+|.++++
T Consensus 151 ~~~l~~~d~~~~~~~---------------~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~---- 208 (347)
T 2gop_A 151 KTTFWIFDTESEEVI---------------EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG---- 208 (347)
T ss_dssp EEEEEEEETTTTEEE---------------EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT----
T ss_pred cceEEEEECCCCeEE---------------eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC----
Confidence 256889998776520 11111 2 67889999999 77666421 3344443321
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC--------CeEE
Q 012712 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--------GRIF 368 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d--------g~i~ 368 (458)
. ...+..+ . .+. .+ +|||++|+.++.+ ..|+
T Consensus 209 ----------------------------------~-~~~l~~~-~--~~~--~~-spdg~~l~~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 209 ----------------------------------K-EEKMFEK-V--SFY--AV-DSDGERILLYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp ----------------------------------E-EEEEEEE-E--SEE--EE-EECSSCEEEEECCSSSCCCSSCEEE
T ss_pred ----------------------------------c-eEEeccC-c--cee--eE-CCCCCEEEEEEccccCCccccceEE
Confidence 1 1222222 1 133 34 8999988876644 4688
Q ss_pred EEEecCCeEEEEeecCCceeeE-EEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecC
Q 012712 369 IWKKKGGELIRVIEADRHVVNC-IEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFS 447 (458)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 447 (458)
+|| +++.......+...+.. +.|+ |+ ++++++.++.++|| +.+++...+..+...|.+++|+| .++++++.+
T Consensus 248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~ 320 (347)
T 2gop_A 248 IYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETA 320 (347)
T ss_dssp EEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECS
T ss_pred EEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCC
Confidence 888 66655445566778886 9999 88 88999999999999 87666555556667799999999 666676766
Q ss_pred Cce-EEEEE
Q 012712 448 CSI-LLFEW 455 (458)
Q Consensus 448 ~~i-~~w~~ 455 (458)
+.. .||.+
T Consensus 321 ~~~~~l~~~ 329 (347)
T 2gop_A 321 TRLRELFTW 329 (347)
T ss_dssp SSCCEEEEE
T ss_pred CChHHheEe
Confidence 664 78764
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.79 E-value=6e-17 Score=140.41 Aligned_cols=268 Identities=10% Similarity=0.014 Sum_probs=180.2
Q ss_pred cCCCeEEEEECCCcceeeeecc-----CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceE
Q 012712 80 SDDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (458)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~ 154 (458)
+.++.|.++|.++++....+.. ........+.+. ++..+++...++.|.+||..+++.+.. +. ......
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~ 87 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPR 87 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCc
Confidence 3488999999999887654421 122346778774 567777777789999999998887655 32 345678
Q ss_pred EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEEEEec
Q 012712 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDI 233 (458)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~ 233 (458)
.+++++++ .++++...++.|.+||+.+++....+....... .......+++ . ++.++++.. .++.|.++|.
T Consensus 88 ~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~-----~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 88 YIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM-----ESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp EEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT-----TTCBCCCEEE-E-TTEEEEEECTTCCEEEEEET
T ss_pred EEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc-----cCCCcceEEE-E-CCEEEEEcCCCCCEEEEEEC
Confidence 89999988 666666588999999999988766554322000 0013455666 2 345555544 4889999999
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-----------CcEEEEEccCCCCCCCCCCCC
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----------EFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------~~i~i~~~~~~~~~~~~~~~~ 302 (458)
.+++....... ......++++|+|++++++.. +.|.++|..+.
T Consensus 160 ~t~~~~~~i~~----------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------- 213 (328)
T 3dsm_A 160 ETDKVVDELTI----------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------- 213 (328)
T ss_dssp TTTEEEEEEEC----------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----------
T ss_pred CCCeEEEEEEc----------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC----------
Confidence 98764332111 123467889999998777653 46999998763
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE--
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-- 380 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 380 (458)
+....+.-.... ....+++ +|++++|+++.. .|.+||..+++....
T Consensus 214 ----------------------------~v~~~~~~~~g~-~p~~la~-~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~ 261 (328)
T 3dsm_A 214 ----------------------------TVEKQFKFKLGD-WPSEVQL-NGTRDTLYWINN--DIWRMPVEADRVPVRPF 261 (328)
T ss_dssp ----------------------------EEEEEEECCTTC-CCEEEEE-CTTSCEEEEESS--SEEEEETTCSSCCSSCS
T ss_pred ----------------------------eEEEEEecCCCC-CceeEEE-ecCCCEEEEEcc--EEEEEECCCCceeeeee
Confidence 222222211111 2578888 999999888765 899999988775421
Q ss_pred eecCCceeeEEEecC-CCCeEEEe----ecCCcEEEecCCccccc
Q 012712 381 IEADRHVVNCIEPHP-HSTVLASS----GIESDIKILTPNAADRA 420 (458)
Q Consensus 381 ~~~~~~~v~~~~~s~-~~~~l~s~----~~d~~i~iw~~~~~~~~ 420 (458)
+..+......++++| ++.++++. ..++.|.+|+.. ++..
T Consensus 262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 222235688999999 45555555 568999999998 5544
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.79 E-value=3e-16 Score=135.31 Aligned_cols=304 Identities=13% Similarity=0.093 Sum_probs=196.6
Q ss_pred CCCCCCCeEEEeeC-----CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe
Q 012712 5 SNNNNNKRARTSVD-----KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (458)
Q Consensus 5 ~~~~~~~~l~~~~~-----d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 79 (458)
..+|+++++++... ++.|.+.|..+++.+.+ +..-..+ . ++++|||++|+++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~---------------------I~vG~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM---------------------IDGGFLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE---------------------EEECSSC-E-EEECTTSSCEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE---------------------EECCCCC-c-EEECCCCCEEEEE
Confidence 45789999888765 67999999998887743 4433444 4 9999999988776
Q ss_pred c----------CCCeEEEEECCCcceeeeeccCC------CcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccce
Q 012712 80 S----------DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGV 141 (458)
Q Consensus 80 ~----------~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~ 141 (458)
+ .++.|.+||..+++.+..+..+. ......++|+| ||++++.+.. ++.|.++|+.+.+.+
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 5 35789999999999887764322 12456799999 9999888864 689999999998877
Q ss_pred eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecce-EEEEEC-CCCCcE
Q 012712 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNL-NAIAID-PRNANL 218 (458)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~~~~ 218 (458)
......+. ....|.+...+++.+.||.+.+.++.+ ++..... ...... ...++ ....|. ++ +++
T Consensus 174 ~tI~v~g~------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--~~~~~~----~~~~~~~~~~~~~~d-G~~ 240 (386)
T 3sjl_D 174 RMLDVPDC------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--TEVFHP----EDEFLINHPAYSQKA-GRL 240 (386)
T ss_dssp EEEECCSE------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE--CCCCSC----TTSCBCSCCEEETTT-TEE
T ss_pred EEEECCCc------ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee--cceecc----ccccccccceeEcCC-CcE
Confidence 66433321 223355546677888899999999876 4442111 111000 00111 123554 54 555
Q ss_pred EEEecCCCeEEEEecCCCcc--CCCccCCCCCCCcCCCcc-ccccccceeEEEeCCCCcEEEEecC-----------CcE
Q 012712 219 FAVAGSDEYTRLYDIRKYKW--DGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYND-----------EFI 284 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-----------~~i 284 (458)
++ .+.+|.|++.|+.+... .....+ +..... ..-.......++++|+++.+..... +.|
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~------~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDAKFLPAVEA------LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSCEECCCEES------SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred EE-EeCCCEEEEEECCCCcceeecceec------cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 44 45579999999976531 111000 000000 0111234456788898876665431 358
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEe-c
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-S 362 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~-~ 362 (458)
.++|+.+. +.+..+.-.. .+.++++ ++|++ +|++. .
T Consensus 314 ~viD~~t~--------------------------------------kv~~~i~vg~---~~~~lav-s~D~~~~ly~tn~ 351 (386)
T 3sjl_D 314 VVLDAKTG--------------------------------------ERLAKFEMGH---EIDSINV-SQDEKPLLYALST 351 (386)
T ss_dssp EEEETTTC--------------------------------------CEEEEEEEEE---EECEEEE-CSSSSCEEEEEET
T ss_pred EEEECCCC--------------------------------------eEEEEEECCC---CcceEEE-CCCCCeEEEEEcC
Confidence 88998873 3333333222 3678998 99997 66664 4
Q ss_pred CCCeEEEEEecCCeEEEEeecCCceeeEEEecCC
Q 012712 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396 (458)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (458)
.++.|.++|..+++.++++..- +..+.|.+++|
T Consensus 352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 5899999999999999998743 33466777766
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.79 E-value=2.3e-16 Score=136.69 Aligned_cols=286 Identities=12% Similarity=0.086 Sum_probs=188.6
Q ss_pred CCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceee
Q 012712 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97 (458)
Q Consensus 18 ~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 97 (458)
.++.|.++|.++++.....+... + -.........+.+. ++++.++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~-----n----------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~ 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA-----N----------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH-----H----------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhh-----c----------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE
Confidence 48899999999998765422100 0 01122445677775 35556666667899999999999888
Q ss_pred eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc---cccceEEEEEcCCCCeEEEEec-CCC
Q 012712 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK---HQGRAHKLAIEPGSPHVFYTCG-EDG 173 (458)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~-~dg 173 (458)
++ ........+++++ ++..+++...++.|.+||..+++......... .......+++ .++ .++++.. .++
T Consensus 79 ~i--~~~~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~ 152 (328)
T 3dsm_A 79 RI--TGFTSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQN 152 (328)
T ss_dssp EE--ECCSSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCC
T ss_pred Ec--CCCCCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCC
Confidence 77 2346788999998 88655555578999999998876554432222 1114456777 334 5555554 488
Q ss_pred eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----------CeEEEEecCCCccCCCcc
Q 012712 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----------EYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~ 243 (458)
.|.++|+++++....+... .....++++|+ +++++++..+ +.|.++|..+.+......
T Consensus 153 ~v~viD~~t~~~~~~i~~g-----------~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIG-----------IQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEEETTTTEEEEEEECS-----------SCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCeEEEEEEcC-----------CCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 9999999998877665421 13467889997 5666666554 789999998876432211
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (458)
.........++++|+++.|..... .+.+||..+++....
T Consensus 221 --------------~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~-------------------------- 259 (328)
T 3dsm_A 221 --------------FKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVR-------------------------- 259 (328)
T ss_dssp --------------CCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSS--------------------------
T ss_pred --------------cCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeee--------------------------
Confidence 111235789999999988877665 899999876532110
Q ss_pred CCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEe----cCCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSG----SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 393 (458)
..+..... ....+++ +| +++++++. ..++.|.+||.. ++.+.++... .....++|
T Consensus 260 ----------~~~~~~~~--~p~gi~v-dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 260 ----------PFLEFRDT--KYYGLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp ----------CSBCCCSS--CEEEEEE-CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred ----------eeecCCCC--ceEEEEE-cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 00111111 2577888 99 55555555 568999999997 9888887642 23455555
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=1.2e-16 Score=136.75 Aligned_cols=232 Identities=11% Similarity=0.082 Sum_probs=159.0
Q ss_pred cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (458)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (458)
..+.....+++|+|++..+++++..++.|..||..++ ...+.. ....+.+++++|+ ++++++...++
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~----------~~~~~~~l~~~~d-g~l~v~~~~~~ 90 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH----------PSHHQNGHCLNKQ-GHLIACSHGLR 90 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES----------SCSSEEEEEECTT-CCEEEEETTTT
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC----------CCCCcceeeECCC-CcEEEEecCCC
Confidence 3445567889999999558888999999999999877 333332 2235789999997 67777777778
Q ss_pred eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE----ec--------------CCcEEEEE
Q 012712 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS----YN--------------DEFIYLFT 288 (458)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~--------------~~~i~i~~ 288 (458)
.|.+||..+++..... ..........+..++++|+|+++++ ++ .+.|+.++
T Consensus 91 ~i~~~d~~~g~~~~~~-----------~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 91 RLERQREPGGEWESIA-----------DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEECSTTCCEEEEE-----------CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred eEEEEcCCCCcEEEEe-----------eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 9999999776532110 0001111235678999999998887 32 12344444
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
.. + ....+..+.. ....++| +|+|+++++.+.++.|+
T Consensus 160 ~~-g---------------------------------------~~~~~~~~~~--~~~gi~~-s~dg~~lv~~~~~~~i~ 196 (296)
T 3e5z_A 160 PD-G---------------------------------------TLSAPIRDRV--KPNGLAF-LPSGNLLVSDTGDNATH 196 (296)
T ss_dssp TT-S---------------------------------------CEEEEECCCS--SEEEEEE-CTTSCEEEEETTTTEEE
T ss_pred CC-C---------------------------------------CEEEeecCCC--CCccEEE-CCCCCEEEEeCCCCeEE
Confidence 32 1 1112222222 2577888 99999988788889999
Q ss_pred EEEec-CCeE---EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEE-ecCCcEEEe
Q 012712 369 IWKKK-GGEL---IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIY-SADYWWSKS 443 (458)
Q Consensus 369 iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s 443 (458)
+|++. +++. ...+..+...+..++++++|+++++. ++.|.+|+........+..+.. +.+++| +|+++.|..
T Consensus 197 ~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v 273 (296)
T 3e5z_A 197 RYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYM 273 (296)
T ss_dssp EEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred EEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence 99996 5554 33343355667899999999977666 7899999998544444554555 889999 589988888
Q ss_pred eecCC
Q 012712 444 QNFSC 448 (458)
Q Consensus 444 ~~~d~ 448 (458)
++.++
T Consensus 274 ~t~~~ 278 (296)
T 3e5z_A 274 TVSTE 278 (296)
T ss_dssp EETTE
T ss_pred EcCCe
Confidence 77764
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.76 E-value=4.5e-16 Score=130.70 Aligned_cols=223 Identities=9% Similarity=0.063 Sum_probs=163.3
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEEEEecCCCeEE
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDRRVI 86 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (458)
..+++|++++.|+.|.+||.++|+.+.+ +..+. ..+.++.++|+|++|++ .++.|.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~---------------------~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~ 59 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWE---------------------YPLEKGWECNSVAATKAGEILFS--YSKGAK 59 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEE---------------------EECCTTCCCCEEEECTTSCEEEE--CBSEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEE---------------------eCCCccCCCcCeEECCCCCEEEe--CCCCEE
Confidence 3457899999999999999999998744 55554 47889999999999884 467899
Q ss_pred EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeecc----ccccceEEEEEcCC
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG----KHQGRAHKLAIEPG 161 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~ 161 (458)
.||. +++.+.++..+....+.++.+.| +|+.+++.+. ++.+..++. +++.+....+. .+......+++.++
T Consensus 60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 60 MITR-DGRELWNIAAPAGCEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp EECT-TSCEEEEEECCTTCEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred EECC-CCCEEEEEcCCCCccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC
Confidence 9998 78888887443345788999999 9999999877 777777775 45544432221 22234556778899
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
+ +++++...++.|..||.+ ++.+..+... ..+.++...++ +++++++..++.|..+|..+++..-.
T Consensus 136 G-~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 136 G-NYLVPLFATSEVREIAPN-GQLLNSVKLS-----------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp S-CEEEEETTTTEEEEECTT-SCEEEEEECS-----------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred C-CEEEEecCCCEEEEECCC-CCEEEEEECC-----------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 8 688999999999999988 8887776532 23456777886 68888888888999999998775432
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
..- ..........+..++..++|.++++..
T Consensus 202 ~~~---------~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 202 VNA---------NDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEG---------GGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ecC---------CCCCCccccccccceEcCCCCEEEEec
Confidence 110 000001123478888999999888875
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=1e-15 Score=130.97 Aligned_cols=243 Identities=9% Similarity=0.015 Sum_probs=163.3
Q ss_pred CCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 102 GHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.+.....+++|+| +++ +++++..++.|..|+..++ ... +..+...+.+++++|++ .++++...++.|.+||.
T Consensus 25 ~~~~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~~--~~~--~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 25 DGFTWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDGQ--LSP--EMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQRE 97 (296)
T ss_dssp CCCSSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTSC--EEE--EESSCSSEEEEEECTTC-CEEEEETTTTEEEEECS
T ss_pred cCCccccCCeEeC--CCCEEEEEeCCCCEEEEEECCCC--eEE--EECCCCCcceeeECCCC-cEEEEecCCCeEEEEcC
Confidence 4455678999999 987 7788888999999998776 332 44566778999999999 67777766789999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE----ec-------------CCCeEEEEecCCCccCCCcc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV----AG-------------SDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~ 243 (458)
.+++.......... .....+..++++|+ ++++++ |+ ..+.|..++.. ++.
T Consensus 98 ~~g~~~~~~~~~~~------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~----- 164 (296)
T 3e5z_A 98 PGGEWESIADSFEG------KKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL----- 164 (296)
T ss_dssp TTCCEEEEECEETT------EECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----
T ss_pred CCCcEEEEeeccCC------CCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-----
Confidence 88875433221100 01224678999998 577776 33 13456666654 221
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (458)
.....+......++|+|+|+.+++.+ ++.|++|++.....
T Consensus 165 -----------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~---------------------------- 205 (296)
T 3e5z_A 165 -----------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE---------------------------- 205 (296)
T ss_dssp -----------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC----------------------------
T ss_pred -----------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc----------------------------
Confidence 11122334568899999999886655 45799999862100
Q ss_pred CCCCcccc-cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEe-cCCCCeE
Q 012712 323 STANTDVR-IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP-HPHSTVL 400 (458)
Q Consensus 323 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l 400 (458)
. .....+..+.. .+.++++ +++|+++++. ++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|
T Consensus 206 -------~~~~~~~~~~~~~--~p~~i~~-d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 206 -------TEYQGVHFTVEPG--KTDGLRV-DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL 271 (296)
T ss_dssp -------EEEEEEEECCSSS--CCCSEEE-BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred -------CcCCCeEeeCCCC--CCCeEEE-CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence 0 00111211111 2456787 9999877666 7899999985 888888887777 999999 6899988
Q ss_pred EEeecCCcEEEecCCccc
Q 012712 401 ASSGIESDIKILTPNAAD 418 (458)
Q Consensus 401 ~s~~~d~~i~iw~~~~~~ 418 (458)
++++.++ +.-++..+..
T Consensus 272 ~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 272 YMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp EEEETTE-EEEEECSCCB
T ss_pred EEEcCCe-EEEEEccccc
Confidence 8887653 4444444443
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.76 E-value=2.6e-14 Score=122.60 Aligned_cols=277 Identities=10% Similarity=0.006 Sum_probs=187.2
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 181 (458)
.+...+.++++.+ ++.++++...++.|.+|+.. +.. .......+...+..+++++++ .++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~--~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSD--KGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECT--TSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECC--CCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC
Confidence 3456789999999 99888877778899999987 433 222233345678999999998 677776668899999976
Q ss_pred CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (458)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (458)
++ ...+.... ....+..++++|+ +.++++...++.|..||. +++... .......
T Consensus 87 -g~-~~~~~~~~--------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~--------------~~~~~~~ 140 (299)
T 2z2n_A 87 -GI-IKEYTLPN--------PDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIRE--------------YELPNKG 140 (299)
T ss_dssp -SC-EEEEECSS--------TTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE--------------EECSSTT
T ss_pred -Cc-EEEEeCCC--------cCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEE--------------ecCCCCC
Confidence 33 22222110 1225789999997 567777777889999998 433210 0011123
Q ss_pred cceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712 262 VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (458)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
..+..+++.++|+++++.. .+.+..|+. ++... ........
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-------------------------------------~~~~~~~~ 182 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-------------------------------------EFKIPTPA 182 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-------------------------------------EEECSSTT
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-------------------------------------EeeCCCCC
Confidence 4688999999998888766 457999987 42100 00011111
Q ss_pred ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
. .+.++++ +++|++.++...++.|.+||. +++.... +..+...+.+++++++|+++++...++.|..|+.. ++.
T Consensus 183 ~--~~~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~ 257 (299)
T 2z2n_A 183 S--GPVGITK-GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII 257 (299)
T ss_dssp C--CEEEEEE-CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE
T ss_pred C--cceeEEE-CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cce
Confidence 1 3678888 999998777777889999998 6664432 23344678999999999977776678899999984 433
Q ss_pred cc--cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 420 AT--LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 420 ~~--~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
.. ...+...+.++++ ++|.+.++.. .+.|..++
T Consensus 258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 258 EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 32 2344456899999 9997776644 45565555
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=1.7e-15 Score=145.90 Aligned_cols=249 Identities=7% Similarity=-0.062 Sum_probs=158.8
Q ss_pred cccceEEEEEcCCCCeEEEEecCCC----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
|...+..++|+|||..++++.+.+| .|++||+.+++...... ....+..++|+|| ++.|+.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-----------~~~~~~~~~wspD-g~~l~~~~~ 190 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-----------ERVKFSCMAWTHD-GKGMFYNAY 190 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-----------EEECSCCEEECTT-SSEEEEEEC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-----------cCcccceEEEEeC-CCEEEEEEE
Confidence 4446889999999954444444343 89999999987655322 1223567999998 577777766
Q ss_pred CCe----------------EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec------CC
Q 012712 225 DEY----------------TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN------DE 282 (458)
Q Consensus 225 dg~----------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~ 282 (458)
++. |++|++.+.+..... ......+...+..+.|+|||++|+..+ +.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~-----------v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-----------CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-----------EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceE-----------EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 655 999999876421110 000111334577899999999888765 23
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
.+++||+.+...... .......+..+... +.. .| +|+|+.|+..+
T Consensus 260 ~l~~~d~~~~~~~~~-------------------------------~~~~~~~l~~~~~~--~~~-~~-s~dg~~l~~~s 304 (710)
T 2xdw_A 260 RLWYCDLQQESNGIT-------------------------------GILKWVKLIDNFEG--EYD-YV-TNEGTVFTFKT 304 (710)
T ss_dssp EEEEEEGGGSSSSSC-------------------------------SSCCCEEEECSSSS--CEE-EE-EEETTEEEEEE
T ss_pred EEEEEECcccccccC-------------------------------CccceEEeeCCCCc--EEE-EE-eccCCEEEEEE
Confidence 699999875100000 00023334444432 222 34 88888777655
Q ss_pred C----CCeEEEEEecCCe--EEEEeecCCc--eeeEEEecCCCCeEEEeecCCc--EEEecCCcccc-cccccccccEEE
Q 012712 363 D----CGRIFIWKKKGGE--LIRVIEADRH--VVNCIEPHPHSTVLASSGIESD--IKILTPNAADR-ATLPTNIEQVCF 431 (458)
Q Consensus 363 ~----dg~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~--i~iw~~~~~~~-~~~~~~~~~v~~ 431 (458)
. ++.|.+||+.+++ ....+..|.. .+..++|++++.++++...|+. |.+|++.+++. ..+..+.+.+..
T Consensus 305 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~ 384 (710)
T 2xdw_A 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVG 384 (710)
T ss_dssp CTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred CCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEE
Confidence 4 3479999998764 2345555543 6888999988888888888885 55667755543 455556667889
Q ss_pred EEEecCCcEEEee----ecCCceEEEEE
Q 012712 432 SIYSADYWWSKSQ----NFSCSILLFEW 455 (458)
Q Consensus 432 ~~~s~d~~~l~s~----~~d~~i~~w~~ 455 (458)
++++|++..++.. ...+.|.+||.
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 9999999666532 23456777764
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.74 E-value=1.5e-15 Score=128.24 Aligned_cols=237 Identities=13% Similarity=0.087 Sum_probs=161.1
Q ss_pred ceEEEEEcCCCCeEEE-EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 152 RAHKLAIEPGSPHVFY-TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
...++++++++ ++++ +...++.|..||..+..... +... ....+.+++++++ ++++++.. ++.|.+
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~---------~~~~p~~i~~~~~-g~l~v~~~-~~~i~~ 91 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTV-LPFN---------GLYQPQGLAVDGA-GTVYVTDF-NNRVVT 91 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EE-CCCC---------SCCSCCCEEECTT-CCEEEEET-TTEEEE
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccce-EeeC---------CcCCcceeEECCC-CCEEEEcC-CCEEEE
Confidence 67889999998 5666 55778899999976554221 1100 1224678999997 56665555 889999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 309 (458)
||....... .........+..++++|+|+++++.. ++.|.+|+..+...
T Consensus 92 ~d~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--------------- 141 (270)
T 1rwi_B 92 LAAGSNNQT---------------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--------------- 141 (270)
T ss_dssp ECTTCSCCE---------------ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---------------
T ss_pred EeCCCceEe---------------eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---------------
Confidence 998764321 01111224678999999999777765 56788886443110
Q ss_pred cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee
Q 012712 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN 389 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 389 (458)
......... ...++++ +++|+++++...++.|.+||............+...+.
T Consensus 142 -----------------------~~~~~~~~~--~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 195 (270)
T 1rwi_B 142 -----------------------TVLPFTGLN--DPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW 195 (270)
T ss_dssp -----------------------EECCCCSCC--SCCCEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE
T ss_pred -----------------------EeeccccCC--CceeEEE-eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce
Confidence 000001111 2567787 99999777777789999999876655443333335688
Q ss_pred EEEecCCCCeEEEeecCCcEEEecCCcccccccc-cccccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712 390 CIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV 457 (458)
Q Consensus 390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 457 (458)
.++++++|.++++...++.|.+|+..+....... .+...+.+++++|+|.+.++...++.|.+++...
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 9999999988877777899999999776544332 2335689999999999888888999999998754
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.74 E-value=9.4e-14 Score=119.12 Aligned_cols=280 Identities=9% Similarity=-0.001 Sum_probs=188.3
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
.....+.++++.++|++.++...++.|.+||.. ++............+.++++.+ ++.++++...++.|..+|.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence 445678999999999988887778999999987 5543322233446789999998 99888877778889999976 4
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
+. ...........+..+++.+++ .++++...++.|..+|.. ++.. .+.... ....+..++++++ +++
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~~d~~-g~l 159 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLPN--------KGSYPAFITLGSD-NAL 159 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECSS--------TTCCEEEEEECTT-SSE
T ss_pred Ce-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCCC--------CCCCceeEEECCC-CCE
Confidence 43 222233344678999999988 677777667899999987 5433 222110 1225789999997 566
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNP 297 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~ 297 (458)
.++...++.|..+|. +++... .........+..++++++|.++++... +.|..|+... ..
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~--------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~--- 220 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEE--------------YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EI--- 220 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEE--------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CE---
T ss_pred EEEecCCCeEEEECC-CCcEEE--------------eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cE---
Confidence 666666788999998 433211 001112346789999999988777664 4799998722 10
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 377 (458)
....+..... .+.++++ +++|++.++...++.|..|+. +++.
T Consensus 221 ----------------------------------~~~~~~~~~~--~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 221 ----------------------------------SEYDIPTPNA--RPHAITA-GKNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp ----------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred ----------------------------------EEEECCCCCC--CceEEEE-CCCCCEEEeccCCCeEEEECC-CCcE
Confidence 0001111111 3678888 999987777766799999998 4543
Q ss_pred EEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 378 IRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 378 ~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
... +......+.++++.++|++.++.. . .|..+++
T Consensus 263 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 263 QEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 322 333345688999999998776655 4 6666654
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=3.9e-15 Score=125.65 Aligned_cols=241 Identities=9% Similarity=0.015 Sum_probs=161.8
Q ss_pred ceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC
Q 012712 106 NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (458)
...++++++ ++++++ +...++.|.+|+..+...... ...+...+.++++++++ .++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSSSCEEEEECC-----EEC--CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECC--CCCEEEEccCCCCcEEEecCCCcccceE--eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence 678899999 998777 546788999998755433221 12233567889999998 5666655 8899999987654
Q ss_pred ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccce
Q 012712 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (458)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (458)
.. .+... ....+..++++|+ ++++++...++.|.+|+..+.... .........+
T Consensus 99 ~~-~~~~~---------~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p 152 (270)
T 1rwi_B 99 QT-VLPFD---------GLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQT---------------VLPFTGLNDP 152 (270)
T ss_dssp CE-ECCCC---------SCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCE---------------ECCCCSCCSC
T ss_pred Ee-eeecC---------CcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeE---------------eeccccCCCc
Confidence 32 11110 1135789999997 577777777889999976543211 0011112357
Q ss_pred eEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712 265 TGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (458)
Q Consensus 265 ~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
.+++++++|+++++.. ++.|.+|+...... ......+..
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--------------------------------------~~~~~~~~~-- 192 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--------------------------------------VVLPFTDIT-- 192 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCE--------------------------------------EECCCSSCC--
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCce--------------------------------------EeecccCCC--
Confidence 8899999999777765 45899999765311 000011111
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
.+.++++ +++|.++++...++.|.+|+............+...+.+++++|+|+++++...++.|+++++...+.
T Consensus 193 ~p~~i~~-d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 193 APWGIAV-DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SEEEEEE-CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CceEEEE-CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 3678888 99998877777789999999865443332223335689999999999888888999999999887654
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.73 E-value=2.9e-15 Score=131.71 Aligned_cols=291 Identities=14% Similarity=0.093 Sum_probs=187.1
Q ss_pred CCCCCeEEEeeCC-----CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec-
Q 012712 7 NNNNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS- 80 (458)
Q Consensus 7 ~~~~~~l~~~~~d-----~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~- 80 (458)
+++++++++.... +.|.+.|..+++.+.+ +..-..+ .+.++|||++|+++.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~---------------------I~vG~~P--gia~SpDgk~lyVan~ 137 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGM---------------------TDGGFLP--HPVAAEDGSFFAQAST 137 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE---------------------EEECSSC--EEEECTTSSCEEEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE---------------------EECCCCC--ceEECCCCCEEEEEec
Confidence 5677777776543 6999999998887744 4333345 799999999888775
Q ss_pred ---------CCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceee
Q 012712 81 ---------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET 143 (458)
Q Consensus 81 ---------~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~ 143 (458)
.++.|.++|..+++.+..+..+ .......+.|+| |+++++.+.. ++.|.+.|+.+.+.+..
T Consensus 138 ~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 138 VFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence 3678999999999987776322 123456789999 9999998874 57899999998887665
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
..+.+ +....|++...+++.+.||.+.+.+..+++...... ... ... .......+.+.+++ ..++...
T Consensus 216 I~v~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~-~v~---~~p~~~~~~~~~dg-~~~~~~s 283 (426)
T 3c75_H 216 LDVPD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVF-HTE---DELLINHPAFSLRS-GRLVWPT 283 (426)
T ss_dssp EECCS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCC-SCT---TSCBCSCCEECTTT-CEEEEEB
T ss_pred EEcCC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eee-ccC---CCceeeEeeecCCC-CEEEEEe
Confidence 33322 133455554667777788888888885554432111 000 000 00011235678874 4554556
Q ss_pred CCCeEEEEecCCCccC--CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-----------CCcEEEEEcc
Q 012712 224 SDEYTRLYDIRKYKWD--GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQD 290 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~~~i~i~~~~ 290 (458)
..+.+.+.|....... ........ ..............++++|+++.+.... .+.|.++|..
T Consensus 284 ~~g~V~ViD~~~~~~~v~~~~~~~~~-----~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 284 YTGKIFQADLTAEGATFRAPIEALTE-----AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp TTSEEEEEEECSSCEEECCCEESSCT-----TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred CCCcEEEEeccCCceEEeeeeeeccc-----cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 6789999998654321 10000000 0000000112223478999987655542 2369999988
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEec-CCCeEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIF 368 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~-~dg~i~ 368 (458)
+. +.+..+.... ...+++| +|||+ ++++.. .++.|.
T Consensus 359 T~--------------------------------------kvv~~I~vg~---~P~gia~-spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 359 TG--------------------------------------ERINKIELGH---EIDSINV-SQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp TC--------------------------------------CEEEEEEEEE---EECEEEE-CCSSSCEEEEEETTTTEEE
T ss_pred CC--------------------------------------eEEEEEECCC---CcCeEEE-ccCCCEEEEEEcCCCCeEE
Confidence 73 3444443222 2578888 99999 888877 589999
Q ss_pred EEEecCCeEEEEe
Q 012712 369 IWKKKGGELIRVI 381 (458)
Q Consensus 369 iwd~~~~~~~~~~ 381 (458)
++|+.+++.++++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999999887
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=1.7e-15 Score=145.32 Aligned_cols=273 Identities=8% Similarity=-0.065 Sum_probs=165.3
Q ss_pred CCeEEEEEcCCC---cEEEeecc--cccceeeee----ccccccceEEEEEcCCCCeEEEEe----cCCCeEEEEeCCCC
Q 012712 117 DDRSIVTCAADG---QVRHAQIL--ERGGVETKL----LGKHQGRAHKLAIEPGSPHVFYTC----GEDGLVQHFDLRTG 183 (458)
Q Consensus 117 ~~~~l~s~~~dg---~i~vw~~~--~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~ 183 (458)
+|++++....++ .-.+|... .+....... -.+|...+..++|+|||..++++. +.+..|++||+.++
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg 157 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG 157 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence 888887766543 34455443 333221110 123555789999999995444443 33468999999998
Q ss_pred CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe-------------EEEEecCCCccCCCccCCCCCCC
Q 012712 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-------------TRLYDIRKYKWDGSTDFGQPADY 250 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~~~ 250 (458)
+....... .......++|+|| ++.|+.++.+.. |++|++.+.+.....
T Consensus 158 ~~~~~~~~----------~~~~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l-------- 218 (695)
T 2bkl_A 158 EWSKVDVI----------EGGKYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV-------- 218 (695)
T ss_dssp CBCSSCCB----------SCCTTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE--------
T ss_pred CCcCCccc----------CcccccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE--------
Confidence 76411110 1111267899998 577877777665 999999876521110
Q ss_pred cCCCccccccccceeEEEeCCCCcEEEEec-CC----cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (458)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (458)
......+...+..+.|+|||++|+..+ ++ .+++++..++
T Consensus 219 ---v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--------------------------------- 262 (695)
T 2bkl_A 219 ---VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--------------------------------- 262 (695)
T ss_dssp ---EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---------------------------------
T ss_pred ---EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---------------------------------
Confidence 001112335688999999999887665 33 4666644321
Q ss_pred CcccccCceeecCccceeeeeEEEEecCCCcEEEEec---CCCeEEEEEecCCeE--EEEeecC--CceeeEEEecCCCC
Q 012712 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGEL--IRVIEAD--RHVVNCIEPHPHST 398 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~~~~ 398 (458)
....+..+... +....+ ++|++++... .++.|.+||+.+++. ...+..+ ...+..++|+ ++.
T Consensus 263 ------~~~~l~~~~~~--~~~~~~--~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 263 ------DFRLLVKGVGA--KYEVHA--WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ------SCEEEEECSSC--CEEEEE--ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred ------ceEEeecCCCc--eEEEEe--cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 12333333322 333333 5666444443 258999999987653 2333333 4568888998 778
Q ss_pred eEEEeecCCcEEEecCC--cccccccccc-cccEEEEEEecCCcEEE----eeecCCceEEEEE
Q 012712 399 VLASSGIESDIKILTPN--AADRATLPTN-IEQVCFSIYSADYWWSK----SQNFSCSILLFEW 455 (458)
Q Consensus 399 ~l~s~~~d~~i~iw~~~--~~~~~~~~~~-~~~v~~~~~s~d~~~l~----s~~~d~~i~~w~~ 455 (458)
++++...|+..+||.+. ++....+..+ .+.+..++++||+..++ +....++|++||.
T Consensus 332 lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 332 LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 88899999988888654 3333334333 55688889999997766 2334467888874
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.69 E-value=3.8e-13 Score=115.30 Aligned_cols=276 Identities=9% Similarity=-0.009 Sum_probs=185.8
Q ss_pred CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (458)
....+.++++.+ ++.+.++...++.|.+|+.. ++.. ...+......+..+++.+++ .++++...++.|..+|..
T Consensus 18 ~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSE--DGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECC--CCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-
Confidence 345788999999 99888887778999999987 4332 22233344678899999998 677776667889999987
Q ss_pred CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc
Q 012712 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (458)
++. ..+.... ....+.++++.++ ++++++...++.|..+|.. ++.... .......
T Consensus 92 g~~-~~~~~~~--------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~--------------~~~~~~~ 146 (300)
T 2qc5_A 92 GGF-TEYPLPQ--------PDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-GTIYEY--------------DLPNKGS 146 (300)
T ss_dssp SCE-EEEECSS--------TTCCEEEEEECST-TCEEEEETTTTEEEEECTT-SCEEEE--------------ECSSTTC
T ss_pred CCe-EEecCCC--------CCCCCccceECCC-CCEEEEccCCCeEEEECCC-CCEEEc--------------cCCCCCC
Confidence 543 2222110 1135789999987 5677776668889999886 432100 0111234
Q ss_pred ceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712 263 GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (458)
Q Consensus 263 ~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
.+..+++.++|+++++.. .+.|..++. ++.. ..........
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-------------------------------------~~~~~~~~~~ 188 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKL-------------------------------------EEYPLPTNAA 188 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-------------------------------------EEEECSSTTC
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECC-CCcE-------------------------------------EEeeCCCCCC
Confidence 678999999999777666 457988887 3210 0001111111
Q ss_pred eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
.+.++++ +++|++.++....+.|.+|+. +++.... +..+...+.+++++++|++.++...++.|..|+.. ++..
T Consensus 189 --~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~ 263 (300)
T 2qc5_A 189 --APVGITS-GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ 263 (300)
T ss_dssp --CEEEEEE-CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred --CcceEEE-CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE
Confidence 3678887 999988777777789999998 5554433 33345568899999999977777667899999984 4333
Q ss_pred c--cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 421 T--LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 421 ~--~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
. +......+.+++++++|.+.++.. . .|..++
T Consensus 264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 264 EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 2 233345688999999998666544 4 565554
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=2.8e-13 Score=118.80 Aligned_cols=275 Identities=9% Similarity=-0.055 Sum_probs=173.7
Q ss_pred EEecCCCEEEEecC--CC---eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEEE
Q 012712 68 SFNTDGDILISGSD--DR---RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRH 132 (458)
Q Consensus 68 ~~s~~~~~l~s~~~--d~---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~v 132 (458)
...|+++++.+... .. .|.++|..+++.+..+..+ ..+ .++++| |+++++.+. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC--CCCEEEEEeccccccccCCCCCeEEE
Confidence 34578887777653 22 8899999999987777433 233 999999 999998886 3678999
Q ss_pred eecccccceeeeecc--c---cccceEEEEEcCCCCeEEEEec-C-CCeEEEEeCCCCCccce-eeecccCCCCcceeec
Q 012712 133 AQILERGGVETKLLG--K---HQGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVV 204 (458)
Q Consensus 133 w~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 204 (458)
||..+.+......+. . +......++++|+++ .|+.+. . ++.|.++| .+++.... +...
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------ 167 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------ 167 (373)
T ss_pred EECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC------------
Confidence 999877665543332 0 012345799999995 455544 3 57899999 98877655 4321
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i 284 (458)
.++.+.|++...+++.+.||.+.++|. +++.... ....+ .
T Consensus 168 --~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-------------------------~~~~~---~--------- 207 (373)
T 2mad_H 168 --TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-------------------------GLVGA---M--------- 207 (373)
T ss_pred --ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-------------------------Eeccc---c---------
Confidence 234555665567777888999999998 6542100 00000 0
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
+ .+. .+ ......+ .+++..++..+..
T Consensus 208 --~-------------------------------------------------~~~-~p-~~~~~~~-~~~~~~~~~~~~~ 233 (373)
T 2mad_H 208 --L-------------------------------------------------TAA-QN-LLTQPAQ-ANKSGRIVWPVYS 233 (373)
T ss_pred --c-------------------------------------------------cCC-cc-eeeccee-EecCCEEEEEcCC
Confidence 0 000 00 0111222 4444443333456
Q ss_pred CeEEEEEecCCe--EEEEeec----------CCceeeEEEecCCCCeEEEeec----------CCcEEEecCCccccccc
Q 012712 365 GRIFIWKKKGGE--LIRVIEA----------DRHVVNCIEPHPHSTVLASSGI----------ESDIKILTPNAADRATL 422 (458)
Q Consensus 365 g~i~iwd~~~~~--~~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~----------d~~i~iw~~~~~~~~~~ 422 (458)
+.+.+.|+.... .+..+.. .......++++||++.|.++.. ++.|.+.|..+++....
T Consensus 234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 788888876542 2222211 1122344789999988777543 35799999999887644
Q ss_pred ccccccEEEEEEecCCc-EEEeee-cCCceEEEEE
Q 012712 423 PTNIEQVCFSIYSADYW-WSKSQN-FSCSILLFEW 455 (458)
Q Consensus 423 ~~~~~~v~~~~~s~d~~-~l~s~~-~d~~i~~w~~ 455 (458)
..-......++|+|||+ .++++. .++.|.++|.
T Consensus 314 i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 314 ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 44444688999999998 677766 5899999985
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.67 E-value=2.5e-14 Score=138.29 Aligned_cols=248 Identities=8% Similarity=0.035 Sum_probs=151.0
Q ss_pred cCCCceEEEEEecCCCEEEEecCC-----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc----
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~---- 129 (458)
+|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+| | +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wsp--D-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLG--N-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEEST--T-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEEC--C-CEEEEEEecCccccc
Confidence 344578899999999999876543 47999999998875432 1222346789999 9 88888776554
Q ss_pred ----------EEEeecccccceeeeec--cccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCC--Cccceee
Q 012712 130 ----------VRHAQILERGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTG--AATELFT 190 (458)
Q Consensus 130 ----------i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~--~~~~~~~ 190 (458)
|++|++.++.......+ ..+...+..+.|+|+|.. |+..+.+ ..|++||+.++ +....+.
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW-VVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE-EEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE-EEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 88999876653211112 233345889999999954 4444433 47999998876 3122222
Q ss_pred ecccCCCCcceeecceEEEEECCCCCcEEEEecC----CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712 191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (458)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (458)
.. ........ +|+ +..|+..+. ++.|.+||+.+.. ...
T Consensus 314 ~~----------~~~~~~~~-~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~------------------------~~~-- 355 (741)
T 1yr2_A 314 PD----------LKAQWDFV-DGV-GDQLWFVSGDGAPLKKIVRVDLSGST------------------------PRF-- 355 (741)
T ss_dssp CS----------SSSCEEEE-EEE-TTEEEEEECTTCTTCEEEEEECSSSS------------------------CEE--
T ss_pred CC----------CCceEEEE-ecc-CCEEEEEECCCCCCCEEEEEeCCCCc------------------------ccc--
Confidence 11 11122222 355 344444433 2335555543310 000
Q ss_pred EEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712 267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (458)
Q Consensus 267 ~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (458)
...+..+.. .+.
T Consensus 356 ------------------------------------------------------------------~~l~~~~~~--~l~ 367 (741)
T 1yr2_A 356 ------------------------------------------------------------------DTVVPESKD--NLE 367 (741)
T ss_dssp ------------------------------------------------------------------EEEECCCSS--EEE
T ss_pred ------------------------------------------------------------------EEEecCCCC--eEE
Confidence 001111111 245
Q ss_pred EEEEecCCCcEEEEecCCCeEEEEEec-CCeEEEEeec-CCceeeEEEecCCCCeEEE----eecCCcEEEecCCccccc
Q 012712 347 GVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEA-DRHVVNCIEPHPHSTVLAS----SGIESDIKILTPNAADRA 420 (458)
Q Consensus 347 ~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s----~~~d~~i~iw~~~~~~~~ 420 (458)
.+.+ + ++.++++...|+..+||.+. +++....+.. +.+.+..++++|+++.|+. ....++|++||+.+++..
T Consensus 368 ~~~~-~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 368 SVGI-A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp EEEE-E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred EEEE-E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 5666 4 66788888889988777665 5666666764 3677899999999987663 334578999999887643
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.67 E-value=1.5e-13 Score=118.69 Aligned_cols=249 Identities=16% Similarity=0.152 Sum_probs=158.7
Q ss_pred ecCCCceEEEEEecCCCEEEE-------ecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCC-CeEEEEEcC
Q 012712 58 DKHRGCVNTVSFNTDGDILIS-------GSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTD-DRSIVTCAA 126 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~~~l~s~~~ 126 (458)
...-....+++|+++|+++++ +..++.|.+||..+++...... .++...+.++++++ + ++++++...
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--~~g~l~v~~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEETT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--CCCcEEEEECC
Confidence 334456789999999988887 5678899999988777533221 12446789999999 8 776665554
Q ss_pred CCcEEEeecccccceee-eec--cccccceEEEEEcCCCCeEEEEecCC---------------CeEEEEeCCCCCccce
Q 012712 127 DGQVRHAQILERGGVET-KLL--GKHQGRAHKLAIEPGSPHVFYTCGED---------------GLVQHFDLRTGAATEL 188 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~ 188 (458)
+.|.+|+.. ++.... ... ......+.++++++++ +++++...+ +.|..+|.. ++....
T Consensus 92 -~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 92 -LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp -TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred -CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 478889987 443221 101 1122457899999998 566666544 456666654 332221
Q ss_pred eeecccCCCCcceeecceEEEEEC----CCCCcE-EEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCcccccccc
Q 012712 189 FTCRPIDDRRNYMTVVNLNAIAID----PRNANL-FAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQV 262 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~-l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (458)
.. .......++++ |+ ++. +++...++.|.+||... ++
T Consensus 168 ~~-----------~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~------------------------- 210 (314)
T 1pjx_A 168 DT-----------AFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAK------------------------- 210 (314)
T ss_dssp EE-----------EESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTE-------------------------
T ss_pred cc-----------CCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCc-------------------------
Confidence 11 11234667777 76 433 34444567777777641 11
Q ss_pred ceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc-c
Q 012712 263 GITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-N 341 (458)
Q Consensus 263 ~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 341 (458)
+... .+ ...+..+. .
T Consensus 211 -~~~~-----------------~~----------------------------------------------~~~~~~~~~~ 226 (314)
T 1pjx_A 211 -IENK-----------------KV----------------------------------------------WGHIPGTHEG 226 (314)
T ss_dssp -EEEE-----------------EE----------------------------------------------EEECCCCSSC
T ss_pred -cccc-----------------eE----------------------------------------------EEECCCCCCC
Confidence 0000 00 00011111 1
Q ss_pred eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE-EEeecCCcEEEecCCc
Q 012712 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL-ASSGIESDIKILTPNA 416 (458)
Q Consensus 342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~iw~~~~ 416 (458)
....+++ +++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.|..|++..
T Consensus 227 --~p~~i~~-d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 227 --GADGMDF-DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp --EEEEEEE-BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred --CCCceEE-CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 2466777 9999988887778999999998787777777776789999999999944 5555678999998875
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=9.4e-14 Score=116.58 Aligned_cols=247 Identities=8% Similarity=0.015 Sum_probs=165.6
Q ss_pred CCCEEEEecCCCeEEEEECCCcceeeeeccCCC-cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (458)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 150 (458)
.+++|++++.++.|.+||.++++.+.++. .+. ..+.++.++| +|+++++ .++.|..||. +++.+..... ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~p--dG~ilvs--~~~~V~~~d~-~G~~~W~~~~-~~~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATK--AGEILFS--YSKGAKMITR-DGRELWNIAA-PAG 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECT--TSCEEEE--CBSEEEEECT-TSCEEEEEEC-CTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECC--CCCEEEe--CCCCEEEECC-CCCEEEEEcC-CCC
Confidence 46789999999999999999999988884 443 5789999999 9998883 4678999998 7776655322 123
Q ss_pred cceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (458)
..+.++.+.|++ +++++.+. ++.|..+|. +++.+..+...... .. .......+++.++ ++++++...++.|.
T Consensus 77 ~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~--~~--~~~~~~~v~~~~~-G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 77 CEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGI--ER--PHAQFRQINKNKK-GNYLVPLFATSEVR 149 (276)
T ss_dssp CEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSC--SS--GGGSCSCCEECTT-SCEEEEETTTTEEE
T ss_pred ccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC--Cc--ccccccCceECCC-CCEEEEecCCCEEE
Confidence 468889999999 67777666 778888885 67666665432210 01 1113445677887 78999999999999
Q ss_pred EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCcccccc
Q 012712 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
.||.. ++....... ...+.++...++|.+++++.++ .|..+|..+++....+..
T Consensus 150 ~~d~~-G~~~w~~~~----------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~-------- 204 (276)
T 3no2_A 150 EIAPN-GQLLNSVKL----------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA-------- 204 (276)
T ss_dssp EECTT-SCEEEEEEC----------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG--------
T ss_pred EECCC-CCEEEEEEC----------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC--------
Confidence 99987 664322111 1245567788999988887755 799999887543322110
Q ss_pred ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC--------CeEEEEEe-cCCeEEE
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--------GRIFIWKK-KGGELIR 379 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~ 379 (458)
..+.+.. ...+..++. .++|+++++.... +..+++++ .+++.+-
T Consensus 205 -------------------------~~~~~~~-l~~~~~~~~-~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W 257 (276)
T 3no2_A 205 -------------------------NDIEGVQ-LFFVAQLFP-LQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW 257 (276)
T ss_dssp -------------------------GGSBSCC-CSEEEEEEE-CTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred -------------------------CCCCCcc-ccccccceE-cCCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence 0000101 113567776 8899888876321 23456665 4677777
Q ss_pred EeecC
Q 012712 380 VIEAD 384 (458)
Q Consensus 380 ~~~~~ 384 (458)
++..+
T Consensus 258 ~~~~~ 262 (276)
T 3no2_A 258 QLNDK 262 (276)
T ss_dssp EECCT
T ss_pred EecCc
Confidence 66543
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.66 E-value=3e-14 Score=125.34 Aligned_cols=291 Identities=13% Similarity=0.055 Sum_probs=181.8
Q ss_pred cCCCEEEEecC-C----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEEEeec
Q 012712 71 TDGDILISGSD-D----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQI 135 (458)
Q Consensus 71 ~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~vw~~ 135 (458)
++++.+++... + +.|.+.|..+++.+.++..+. .+ .++++| |+++|+.+. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46666555543 2 699999999999988885443 34 899999 999988876 3678999999
Q ss_pred ccccceeeeeccc-----cccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 136 LERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 136 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
.+.+......+.+ .......+.++|+++.++++... ++.|.+.|+.+++.+..+.... +.
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------~~ 222 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------CY 222 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--------------EE
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--------------ce
Confidence 9988766543320 11234578999999544444333 6889999999998877765321 12
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~ 288 (458)
...|++...+++.+.||.+.+.+..+++...... ..+..........+.+.+++..++..+ .+.+.+.|
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 2334334555666667777777774443211000 000000011112356788876554444 56799999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc--eeecCccceeeeeEEEEecCCCcEEEEecC---
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP--QVYKGHRNCVTVKGVNFFGPKCEYVVSGSD--- 363 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~--- 363 (458)
........... .... ........+.....+++ +|+++.+++...
T Consensus 293 ~~~~~~~v~~~------------------------------~~~~~~~~i~~g~~p~g~~~va~-s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 293 LTAEGATFRAP------------------------------IEALTEAERADDWRPGGWQQTAY-HRQSDRIYLLVDQRD 341 (426)
T ss_dssp ECSSCEEECCC------------------------------EESSCTTTGGGTEEECSSSCEEE-EGGGTEEEEEEEECC
T ss_pred ccCCceEEeee------------------------------eeeccccccccccccCCceeeEE-cCCCCEEEEEecccc
Confidence 86532100000 0000 00000000001123566 999887776542
Q ss_pred -------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEee-cCCcEEEecCCccccccc
Q 012712 364 -------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATL 422 (458)
Q Consensus 364 -------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~~ 422 (458)
.+.|.++|+.+.+.+.++... .....++|+|||+ +++++. .++.|.++|..+++....
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 357999999999999988643 3588999999999 888877 589999999999877633
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=4.6e-14 Score=136.43 Aligned_cols=276 Identities=9% Similarity=-0.014 Sum_probs=164.7
Q ss_pred ccCCCCeEEEEEcCCCc---EEEeeccc-----ccceeee----eccccccceEEEEEcCCCCeEEEEecCCC----eEE
Q 012712 113 MPFTDDRSIVTCAADGQ---VRHAQILE-----RGGVETK----LLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQ 176 (458)
Q Consensus 113 ~~~~~~~~l~s~~~dg~---i~vw~~~~-----~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~ 176 (458)
+| +|++++....++. -.+|.... ++..... .-.+|...+..++|+|||..++++.+.+| .|+
T Consensus 115 ~p--dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 115 QR--RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EE--ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred EE--ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 37 8888877654432 55665532 2221110 01223346889999999955444444333 599
Q ss_pred EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--------------eEEEEecCCCccCCCc
Q 012712 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--------------YTRLYDIRKYKWDGST 242 (458)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~ 242 (458)
+||+.+++...... ....+..++|+|| . .|+.+..++ .|++|++.+.......
T Consensus 193 v~dl~tg~~~~~~~-----------~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l 259 (741)
T 1yr2_A 193 FVGVADGKPLADEL-----------KWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP 259 (741)
T ss_dssp EEETTTCCEEEEEE-----------EEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE
T ss_pred EEECCCCCCCCccC-----------CCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE
Confidence 99999998654311 2222357899997 4 555554443 3889998765421110
Q ss_pred cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-----cEEEEEccCCCCCCCCCCCCccccccccccCCCC
Q 012712 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (458)
.+ ....+...+..+.|+|||++|+..+ ++ .+++||+.++.
T Consensus 260 v~-----------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~----------------------- 305 (741)
T 1yr2_A 260 VF-----------ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK----------------------- 305 (741)
T ss_dssp EE-----------CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE-----------------------
T ss_pred Ee-----------ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC-----------------------
Confidence 00 0111223578999999999887655 22 59999987631
Q ss_pred ccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC----CCeEEEEEecCC--eEEEEeecCCceeeE
Q 012712 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----CGRIFIWKKKGG--ELIRVIEADRHVVNC 390 (458)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~v~~ 390 (458)
......+..+... .... + +|+|+.|+..+. ++.|.+||+.++ +....+..+...+..
T Consensus 306 -------------~~~~~~l~~~~~~--~~~~-~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 306 -------------IGPVTALIPDLKA--QWDF-V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368 (741)
T ss_dssp -------------ECCCEEEECSSSS--CEEE-E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred -------------CcccEEecCCCCc--eEEE-E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence 0102333333322 2222 3 578888877664 456999999874 344444555556778
Q ss_pred EEecCCCCeEEEeecCCcEEEecCC--ccccccccc-ccccEEEEEEecCCcEEEe----eecCCceEEEEE
Q 012712 391 IEPHPHSTVLASSGIESDIKILTPN--AADRATLPT-NIEQVCFSIYSADYWWSKS----QNFSCSILLFEW 455 (458)
Q Consensus 391 ~~~s~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~-~~~~v~~~~~s~d~~~l~s----~~~d~~i~~w~~ 455 (458)
++|+ ++.++++...|+..+||.+. ++....+.. +.+.+..++++||+..++. ....++|++||.
T Consensus 369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 8887 66788888889987777554 333333432 3566889999999976652 234467888874
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.62 E-value=6.5e-14 Score=122.19 Aligned_cols=279 Identities=10% Similarity=0.064 Sum_probs=170.4
Q ss_pred CceEEEEEecCCCEEEEec--CCCeEEEEECCCcceeeeec------cCCCcceeEEEEccCCCCeEEEEEcC-----CC
Q 012712 62 GCVNTVSFNTDGDILISGS--DDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAA-----DG 128 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~-----dg 128 (458)
.....++++|+|+++++.. .++.++||.+.+++. ..+. ..+...+..+++.+ +++++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence 6789999999999988863 233356666554443 2221 23456899999999 8887666543 57
Q ss_pred cEEEeecccccceeeeecc----ccccceEEEEEcCCCCeEEEEec---CCCeEEEEeCCCCCccceeeecccCCCCcce
Q 012712 129 QVRHAQILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (458)
.|.+||+.+++......+. .+...+..++++|++..++++.. .++.|.+||+.+++....+..+...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~------ 167 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI------ 167 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT------
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc------
Confidence 8999999887755443332 22345689999986546666665 6789999999888654433210000
Q ss_pred eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (458)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (458)
.... ..+.++ +..+.+...++.+..|. ..+..++|+|+|+.|..+..
T Consensus 168 ~~~~---~~~~~~-g~~~~~~~~~g~~~~~~-----------------------------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 168 APED---IDLVID-GVPVQIGQPDGTVIRPH-----------------------------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp SCCS---CCCEET-TEECBEECTTSCEECCC-----------------------------CCEEEEEECTTSCEEEEEES
T ss_pred cccc---cceeEC-CEEEEeccCCCceecee-----------------------------cccceeEeccCCCEEEEEeC
Confidence 0000 223334 45666666676664442 13578999999987777663
Q ss_pred C--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712 282 E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (458)
Q Consensus 282 ~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~ 359 (458)
. .++.++....... .+. ......... ..++.. ....+++ +++|++++
T Consensus 215 ~~~~l~~~~~~~~~~~-~~~--------------------------~~~~~~~~~-~~g~~g--~pdgia~-d~~G~l~v 263 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNL-QLT--------------------------DAELGSKIE-RYSEKP--ICDGISI-DKDHNIYV 263 (343)
T ss_dssp SCSEEEEEEHHHHTCT-TCC--------------------------HHHHHTTCE-EEEECC--SCSCEEE-CTTCCEEE
T ss_pred CCCeEEEEEHHHhcCC-CCC--------------------------hhhhhcceE-ecccCC--CCceEEE-CCCCCEEE
Confidence 3 4555553210000 000 000000001 111111 2456777 99999999
Q ss_pred EecCCCeEEEEEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 360 SGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 360 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
+...++.|.+||.++++....... +...+.+++|.++++++++.+..+.+.+|.
T Consensus 264 a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 264 GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 988899999999866764433332 234588999999999888877666555554
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.61 E-value=6.2e-13 Score=118.39 Aligned_cols=240 Identities=10% Similarity=-0.008 Sum_probs=157.0
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YT 228 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i 228 (458)
.....++|++++ +++++...++.|+.||+.++........ ..... ++|+|+ ++.++++..++ .|
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~-----------~~~~~-ia~~~~-g~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPG-----------FKGGK-PAVTKD-KQRVYSIGWEGTHTV 196 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEET-----------CCBCB-CEECTT-SSEEEEEBSSTTCEE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeecc-----------CCCCc-eeEecC-CCcEEEEecCCCceE
Confidence 357789999998 6777777789999999988765444321 11233 899998 56777777655 78
Q ss_pred EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccc
Q 012712 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 307 (458)
.+++.......... ..........+.+++++| ++.++++..++.|+.|+..++...
T Consensus 197 ~~~d~~~~~~~~~~-----------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~------------ 253 (409)
T 3hrp_A 197 YVYMKASGWAPTRI-----------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT------------ 253 (409)
T ss_dssp EEEEGGGTTCEEEE-----------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE------------
T ss_pred EEEEcCCCceeEEe-----------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE------------
Confidence 88887654311000 000011234578899999 566666434557999998753210
Q ss_pred cccccCCCCccccCCCCCCcccccCcee--ecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEecCCeEEEEeecC
Q 012712 308 EASEMGSDHTSAASPSTANTDVRIAPQV--YKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (458)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (458)
.... ..+.....+...++| +|+ +.++++-..+++|+.|+.. ++ +..+.++
T Consensus 254 ------------------------~~~~~~~~g~~~~~P~~~ia~-~p~~g~lyv~d~~~~~I~~~~~~-g~-~~~~~g~ 306 (409)
T 3hrp_A 254 ------------------------LIKQLELSGSLGTNPGPYLIY-YFVDSNFYMSDQNLSSVYKITPD-GE-CEWFCGS 306 (409)
T ss_dssp ------------------------EEEECCCCSCCCCSSCCEEEE-ETTTTEEEEEETTTTEEEEECTT-CC-EEEEEEC
T ss_pred ------------------------EEecccccCCCCCCccccEEE-eCCCCEEEEEeCCCCEEEEEecC-CC-EEEEEeC
Confidence 0000 111111100127888 994 6666666778999999875 33 3334333
Q ss_pred C---------------ceeeEEEecCCCCeEEEee-cCCcEEEecCCcccccccccc---------------cccEEEEE
Q 012712 385 R---------------HVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLPTN---------------IEQVCFSI 433 (458)
Q Consensus 385 ~---------------~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~---------------~~~v~~~~ 433 (458)
. .....++++|+|+++++-. .+++|+.|++.+++...+.++ ......++
T Consensus 307 ~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 307 ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence 2 3478999999999887777 789999999777765544433 24588999
Q ss_pred EecCCcEEEeeecCCceEEEE
Q 012712 434 YSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 434 ~s~d~~~l~s~~~d~~i~~w~ 454 (458)
++|+|.++++-..++.|+.+.
T Consensus 387 vd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp ECSSSEEEEEESTTCEEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEEE
Confidence 999998888877888887765
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.61 E-value=3.1e-12 Score=109.21 Aligned_cols=226 Identities=8% Similarity=0.014 Sum_probs=148.3
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
.-..+..|+|++..++++...++.|..||..+++. ..+. ....+.+++++|+ ++++++ . ++.|.+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-----------~~~~~~~i~~~~d-G~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-----------MDAPVSSVALRQS-GGYVAT-I-GTKFCA 77 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-----------CSSCEEEEEEBTT-SSEEEE-E-TTEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-----------CCCceEEEEECCC-CCEEEE-E-CCeEEE
Confidence 34567889997657888888899999999988764 2222 2235889999998 555444 3 567999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC----------CcEEEEEccCCCCCCCCCC
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----------EFIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~i~i~~~~~~~~~~~~~~ 300 (458)
||..+++....... ........+..++++|+|+++++... ..-.+|.+...
T Consensus 78 ~d~~~g~~~~~~~~-----------~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-------- 138 (297)
T 3g4e_A 78 LNWKEQSAVVLATV-----------DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-------- 138 (297)
T ss_dssp EETTTTEEEEEEEC-----------CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------
T ss_pred EECCCCcEEEEEec-----------CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--------
Confidence 99887653211000 00012345788999999997776431 22345554321
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEe--cCCeE
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKK--KGGEL 377 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~--~~~~~ 377 (458)
.. ...+..... ....++| +||++.|+ +.+.++.|.+|++ .++..
T Consensus 139 -----------------------------g~-~~~~~~~~~--~pngi~~-spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 139 -----------------------------HH-VKKYFDQVD--ISNGLDW-SLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp -----------------------------SC-EEEEEEEES--BEEEEEE-CTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred -----------------------------CC-EEEEeeccc--cccceEE-cCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 00 111111111 2567888 99998765 5556789999997 45543
Q ss_pred E-----EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEe-cCCcEEEe
Q 012712 378 I-----RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYS-ADYWWSKS 443 (458)
Q Consensus 378 ~-----~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s-~d~~~l~s 443 (458)
. ..+..+.+.+..++++++|++.++...++.|..|+..+++.. .+..+...+++++|+ ||++.|..
T Consensus 186 ~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence 2 223334457889999999998888777889999999977655 444444679999999 89866543
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=3.4e-12 Score=110.14 Aligned_cols=242 Identities=13% Similarity=0.154 Sum_probs=154.5
Q ss_pred cceEEEEEcCCCCeEEEE-------ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 151 GRAHKLAIEPGSPHVFYT-------CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
....+++|++++ .++++ ...++.|..||..+++.... ..... .+ ....+.++++++++++++++ +
T Consensus 18 ~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~---~~--~~~~~~~i~~~~~~g~l~v~-~ 89 (314)
T 1pjx_A 18 PGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEV---NG--YGGIPAGCQCDRDANQLFVA-D 89 (314)
T ss_dssp TTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEE---TT--EECCEEEEEECSSSSEEEEE-E
T ss_pred CCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Eeccc---CC--CCCCCceEEEecCCCcEEEE-E
Confidence 456789999988 67777 57788999999887765322 11000 01 22357899999973444444 4
Q ss_pred CCCeEEEEecCCCccCCC-ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----------------cEEE
Q 012712 224 SDEYTRLYDIRKYKWDGS-TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----------------FIYL 286 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------------~i~i 286 (458)
..+.|.+||.. ++.... .. .........+..++++++|+++++...+ .+..
T Consensus 90 ~~~~l~~~d~~-g~~~~~~~~-----------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFEEIAKK-----------DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp TTTEEEEEETT-SCEEECCSB-----------CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCCCEEEEeCC-CCEEEEEec-----------cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence 44479999987 542110 00 0001123457899999999888776532 3555
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEec----CCCcEEEEe-
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG----PKCEYVVSG- 361 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s----~~~~~l~~~- 361 (458)
|+.. + . ...+..+.. ....+++ + |+++.|+.+
T Consensus 158 ~~~~-g--------------------------------------~-~~~~~~~~~--~~~~i~~-~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 158 FTTD-G--------------------------------------Q-MIQVDTAFQ--FPNGIAV-RHMNDGRPYQLIVAE 194 (314)
T ss_dssp ECTT-S--------------------------------------C-EEEEEEEES--SEEEEEE-EECTTSCEEEEEEEE
T ss_pred ECCC-C--------------------------------------C-EEEeccCCC--CcceEEE-ecccCCCCCEEEEEE
Confidence 5432 1 0 111111111 2456777 8 999765544
Q ss_pred cCCCeEEEEEec-CCeE-----EEEeecCC-ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEE
Q 012712 362 SDCGRIFIWKKK-GGEL-----IRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSI 433 (458)
Q Consensus 362 ~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~ 433 (458)
..++.|++|+.. +++. ...+..+. ..+..++++++|+++++...++.|.+|+..+++.. .+..+...+.+++
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~ 274 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEE
Confidence 567899999986 4542 23334443 56889999999998888778899999999866544 3334446799999
Q ss_pred EecCCcEE-EeeecCCceEEEEE
Q 012712 434 YSADYWWS-KSQNFSCSILLFEW 455 (458)
Q Consensus 434 ~s~d~~~l-~s~~~d~~i~~w~~ 455 (458)
|+|+|++| ++...++.|..|+.
T Consensus 275 ~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 275 FKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCeEEEEeC
Confidence 99999855 45555678888874
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.59 E-value=7.1e-14 Score=121.97 Aligned_cols=269 Identities=10% Similarity=0.002 Sum_probs=162.4
Q ss_pred cceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceee----eeccccccceEEEEEcCCCCeEEEEecC-----CC
Q 012712 105 DNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET----KLLGKHQGRAHKLAIEPGSPHVFYTCGE-----DG 173 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg 173 (458)
.....++++| +++.+++... ++.++||.+.+++.... .....+...+..+++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~--~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTP--DGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECT--TSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECC--CCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 6789999999 9999888642 34366666653322110 0012345678999999998 66555433 57
Q ss_pred eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec---CCCeEEEEecCCCccCCCccCCCCCCC
Q 012712 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADY 250 (458)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (458)
.|.+||+.+++....+........ ....+..++++|+++..+++-. .++.|.+||+.+++....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~----~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~--------- 160 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITL----SNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV--------- 160 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSC----TTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE---------
T ss_pred eEEEEECCCCeEEEEEECChhhcc----cccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE---------
Confidence 899999999886666554221110 1224688999986555556555 678999999987653211
Q ss_pred cCCCccccccccc-eeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712 251 FCPPNLIGDEQVG-ITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (458)
Q Consensus 251 ~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
...|... .....+.++|..+.+.. ++.+..|.
T Consensus 161 ------~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------------------------------- 194 (343)
T 2qe8_A 161 ------LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------------------------------- 194 (343)
T ss_dssp ------CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------------------------
T ss_pred ------ecCCCcccccccceeECCEEEEeccCCCceecee----------------------------------------
Confidence 1110000 00022333444433322 22232221
Q ss_pred cccCceeecCccceeeeeEEEEecCCCcEEEEecCCC-eEEEEEec---CCe-----EEE--EeecCCceeeEEEecCCC
Q 012712 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKK---GGE-----LIR--VIEADRHVVNCIEPHPHS 397 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-~i~iwd~~---~~~-----~~~--~~~~~~~~v~~~~~s~~~ 397 (458)
. .+..+++ +|||++|+.+..++ .++.++.. .+. ... ...++......++++++|
T Consensus 195 -----------~---~~~gia~-s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G 259 (343)
T 2qe8_A 195 -----------L---GVNGIVL-DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH 259 (343)
T ss_dssp -----------C---CEEEEEE-CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred -----------c---ccceeEe-ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence 0 1567888 99999888877665 55555532 110 000 111334456789999999
Q ss_pred CeEEEeecCCcEEEecCCccccccccc--ccccEEEEEEecCCcEEEeeecCCce
Q 012712 398 TVLASSGIESDIKILTPNAADRATLPT--NIEQVCFSIYSADYWWSKSQNFSCSI 450 (458)
Q Consensus 398 ~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~~~d~~i 450 (458)
.++++...++.|.+|+..+++...+.. ......+++|.++|.++++.+..+.+
T Consensus 260 ~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 260 NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 999998889999999995554433322 24458999999999877776644443
No 213
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.58 E-value=1.7e-13 Score=118.69 Aligned_cols=293 Identities=10% Similarity=-0.035 Sum_probs=178.9
Q ss_pred CCCeEEEe-eCCC----cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec---
Q 012712 9 NNKRARTS-VDKA----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS--- 80 (458)
Q Consensus 9 ~~~~l~~~-~~d~----~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--- 80 (458)
...+++.. ..++ .|.+.|..+++.+.+ +..-..+ .+.++||+++++++.
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~---------------------i~vG~~P--~i~~spDg~~lyVan~~~ 86 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGH---------------------SLGAFLS--LAVAGHSGSDFALASTSF 86 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEE---------------------EEECTTC--EEEECTTSSCEEEEEEEE
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEE---------------------EeCCCCC--ceEECCCCCEEEEEcccc
Confidence 33444444 4344 788999998887743 4433345 799999999888875
Q ss_pred -------CCCeEEEEECCCcceeeeeccCC------CcceeEEEEccCCCCeEEEEEcC--CCcEEE--eecccccceee
Q 012712 81 -------DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRH--AQILERGGVET 143 (458)
Q Consensus 81 -------~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~--dg~i~v--w~~~~~~~~~~ 143 (458)
.++.|.+||+.+++.+.++..+. ......++++| |+++++++.. +..+.+ +|..+ +..
T Consensus 87 ~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp--DGk~lyVan~~~~~~v~V~~iD~~t---v~~ 161 (368)
T 1mda_H 87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASD---DQL 161 (368)
T ss_dssp TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred cccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence 36789999999999988874220 13466899999 9999998875 457888 99877 222
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-----CCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
....+ . ..+.|++...+++.+.|+.+.+.|+.+ ++...... ... .. ...+. . .++++.
T Consensus 162 i~v~~---~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i-~v----g~~P~---~-~~~~~~- 224 (368)
T 1mda_H 162 TKSAS---C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQ-NC----SSQAA---Q-ANYPGM- 224 (368)
T ss_dssp EECSS---C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTS-CB----CSCCE---E-ETTTTE-
T ss_pred EECCC---c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-eee-eC----CCCcc---c-cccCCE-
Confidence 11211 1 224466656677788889888888876 33221100 000 00 11122 3 555444
Q ss_pred EEEecCCCeEEEEecCCCc--cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe-c-C--------CcEEE
Q 012712 219 FAVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-D--------EFIYL 286 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-~--------~~i~i 286 (458)
++..+. +.+.+.|..... ......+... ..............++++|+++.+..+ . . +.+.+
T Consensus 225 ~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~-----~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 225 LVWAVA-SSILQGDIPAAGATMKAAIDGNES-----GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp EEECBS-SCCEEEECCSSCCEEECCCCSSCT-----HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred EEEEcC-CEEEEEECCCCcceEEEEEEeccc-----cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 444445 899999986532 1111100000 000000011122337899998866643 2 2 35679
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE-EEEec-CC
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS-DC 364 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-l~~~~-~d 364 (458)
+|+.+. +.+..+.... ...++++ +|||++ +++.. .+
T Consensus 299 iD~~t~--------------------------------------~vv~~i~vg~---~p~gi~~-s~Dg~~l~va~~~~~ 336 (368)
T 1mda_H 299 VTASVG--------------------------------------QTSGPISNGH---DSDAIIA-AQDGASDNYANSAGT 336 (368)
T ss_dssp EESSSC--------------------------------------CEEECCEEEE---EECEEEE-CCSSSCEEEEEETTT
T ss_pred EECCCC--------------------------------------eEEEEEECCC---CcceEEE-CCCCCEEEEEccCCC
Confidence 998874 2333333222 2678888 999984 45555 48
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecC
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 395 (458)
+.|.++|+.+++.++++.... ....+++.+
T Consensus 337 ~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 337 EVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp TEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred CeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 999999999999999997554 345666654
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.58 E-value=2.1e-11 Score=104.06 Aligned_cols=240 Identities=12% Similarity=0.116 Sum_probs=143.5
Q ss_pred eecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 57 LDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
+..+..---+..|+|++ .++++...++.|..||..+++. ..+ .....+.+++++| +++++++. ++.|.+||.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~--dG~l~v~~--~~~l~~~d~ 80 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQ--SGGYVATI--GTKFCALNW 80 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBT--TSSEEEEE--TTEEEEEET
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECC--CCCEEEEE--CCeEEEEEC
Confidence 34444556688999954 5666667789999999987765 233 2456799999999 99865554 467999998
Q ss_pred ccccceeeeecc--ccccceEEEEEcCCCCeEEEEecCC---------CeEEEEeCCC-CCccceeeecccCCCCcceee
Q 012712 136 LERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRT-GAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 136 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 203 (458)
.+++........ .....++.++++|+| +++++...+ ..-.+|.+.. ++...... ..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------~~ 148 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-----------QV 148 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------EE
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------cc
Confidence 766543221111 122457889999999 455543221 1123333222 21111111 11
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (458)
...+.++|+|++..++++.+.++.|..||+.... +.+..
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~------------------------G~~~~----------------- 187 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT------------------------GQISN----------------- 187 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT------------------------CCEEE-----------------
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCC------------------------CcccC-----------------
Confidence 2345666666632333444455566666552100 00000
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
.+....+..+.. ....+++ +++|++.++...
T Consensus 188 ----------------------------------------------~~~~~~~~~~~~--~p~g~~~-d~~G~lwva~~~ 218 (297)
T 3g4e_A 188 ----------------------------------------------RRSVYKLEKEEQ--IPDGMCI-DAEGKLWVACYN 218 (297)
T ss_dssp ----------------------------------------------EEEEEECCGGGC--EEEEEEE-BTTSCEEEEEET
T ss_pred ----------------------------------------------cEEEEECCCCCC--CCCeeEE-CCCCCEEEEEcC
Confidence 000001111111 2567787 999988887777
Q ss_pred CCeEEEEEecCCeEEEEeecCCceeeEEEec-CCCCeEEEeec
Q 012712 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSGI 405 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 405 (458)
++.|.+||..+++.+..+..+...+++++|. |+++.|..++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 8899999998899999998877789999998 88887655543
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=5.4e-12 Score=112.35 Aligned_cols=270 Identities=10% Similarity=0.033 Sum_probs=160.8
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--cEEEeeccccc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERG 139 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~~ 139 (458)
.....|+|+++++++++...++.|++||.+++...... .. ..... ++|+| +++.|+++..++ .|.+++...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~-~~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PG-FKGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ET-CCBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-cc-CCCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCCc
Confidence 35789999999998888888899999999877664433 22 23334 99999 999998888766 78888876554
Q ss_pred ceeee-ec-cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712 140 GVETK-LL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (458)
Q Consensus 140 ~~~~~-~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (458)
..... .+ ......+.+++++|++..+++ +..++.|+.||..++... .+...... +.....+...++|+|+++.
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~~~---g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLELS---GSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECCCC---SCCCCSSCCEEEEETTTTE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEeccccc---CCCCCCccccEEEeCCCCE
Confidence 32221 11 214456788999995435544 667889999999877532 22111010 0001111128999996577
Q ss_pred EEEEecCCCeEEEEecCCCccCCCccCCCC-CCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-cEEEEEccCCCC
Q 012712 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLG 294 (458)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~~~~~~~~ 294 (458)
++++-..++.|+.|+....... . .+.. .............-.....++++|+|+++++-. .+ .|+.|++.++..
T Consensus 281 lyv~d~~~~~I~~~~~~g~~~~-~--~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGECEW-F--CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEEETTTTEEEEECTTCCEEE-E--EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCCCEEE-E--EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 7777778899999987643110 0 0000 000000000001123478999999999777765 44 799999655321
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccc-cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR-IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
. .+.... . ....... .....+ . ....+++ +++|.++++-..+++|+.+++
T Consensus 358 ~-~~~g~~------------~--------~~g~~~g~~~~~~~----~--~P~giav-d~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 S-TVAGQV------------D--------VASQIDGTPLEATF----N--YPYDICY-DGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp E-EEEECT------------T--------CBSCCCBSTTTCCB----S--SEEEEEE-CSSSEEEEEESTTCEEEEEEE
T ss_pred E-EEeCCC------------C--------CCCcCCCChhceEe----C--CceEEEE-cCCCCEEEEECCCCeEEEEEe
Confidence 0 000000 0 0000000 000001 1 2578888 999988888888899998876
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=8.6e-14 Score=120.68 Aligned_cols=181 Identities=11% Similarity=0.162 Sum_probs=132.1
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcc---------eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
+++.+++++...++++|+.++ +++|++++.+ ........+.. |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 689999999999999999985 6779876543 11111124566 999999 56788888 78999999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
|+.+...... ...|...+.++.+.+. + +++++.||.|.+||+.++.... ....|.|++|+|
T Consensus 112 dv~sl~~~~~--~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~--------------~~~~Vs~v~WSp 172 (388)
T 1xip_A 112 DLEELSEFRT--VTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ--------------LAQNVTSFDVTN 172 (388)
T ss_dssp ESSSTTCEEE--EEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE--------------EEESEEEEEECS
T ss_pred EchhhhccCc--cceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc--------------ccCCceEEEEcC
Confidence 9987664333 4556677888777654 3 7888999999999999877543 122699999999
Q ss_pred CCCcEEEEecCCCeEEEEecCCCcc--CCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec
Q 012712 214 RNANLFAVAGSDEYTRLYDIRKYKW--DGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
+ + ++.|..||.+++|+....+. .... .++..+.. .+...|.++.|.+++.++++..
T Consensus 173 k-G--~~vg~~dg~i~~~~~~~~~~~~k~~I--------~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 S-Q--LAVLLKDRSFQSFAWRNGEMEKQFEF--------SLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp S-E--EEEEETTSCEEEEEEETTEEEEEEEE--------CCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred C-c--eEEEEcCCcEEEEcCCCcccccccee--------cCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 8 4 67789999999998876652 1110 01111111 2568899999999999998744
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.55 E-value=4e-13 Score=116.34 Aligned_cols=283 Identities=6% Similarity=-0.126 Sum_probs=172.7
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEEEeecccccceeeeecccc----
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGGVETKLLGKH---- 149 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~---- 149 (458)
+|.+.|..+++.+.++..+.. + .+.++| |+++++++. .++.|.+||..+.+......+.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 889999999999998865553 4 799999 999998886 368899999999888766433210
Q ss_pred -ccceEEEEEcCCCCeEEEEecC-CCeEEE--EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712 150 -QGRAHKLAIEPGSPHVFYTCGE-DGLVQH--FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 150 -~~~v~~~~~~~~~~~~l~s~~~-dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
......++++|+++.++++... +..+.+ +|+.+ +..+... . +..+.|++...+++.+.|
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~------------~--~~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA------------S--CFHIHPGAAATHYLGSCP 184 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS------------S--CCCCEEEETTEEECCCCT
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC------------C--ceEEccCCCeEEEEEcCC
Confidence 1235679999999554444323 467888 99877 3333211 0 112334445566677788
Q ss_pred CeEEEEecCC-----CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC--CCC
Q 012712 226 EYTRLYDIRK-----YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP--NPP 298 (458)
Q Consensus 226 g~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~--~~~ 298 (458)
|.+.+.|+.+ ++...... ....-...+. +...++.++.+.. +.+.+.|....... ..+
T Consensus 185 g~~~~vd~~~~~~~~~~v~~~~t-----------~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~ 249 (368)
T 1mda_H 185 ASLAASDLAAAPAAAGIVGAQCT-----------GAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp TSCEEEECCSSCCCCEECCCCSC-----------TTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred CCEEEEECccccccCCeEEEEee-----------eeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence 8888888876 33211000 0010012222 3334445555555 88888887642110 000
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC---------CCeEEE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---------CGRIFI 369 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~---------dg~i~i 369 (458)
.. ........+. .+.....+++ +||++.++.+.. ++.+.+
T Consensus 250 ~~-----------------------------~~~~~~~~~~-~p~g~~~v~~-s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 250 DG-----------------------------NESGRKADNF-RSAGFQMVAK-LKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp CS-----------------------------SCTHHHHTTE-EECSSSCEEE-ETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred Ee-----------------------------cccccccccc-ccCcceeeEE-cCCCCEEEEEeccccCcccccCCCEEE
Confidence 00 0000000000 0000112556 999998886543 235669
Q ss_pred EEecCCeEEEEeecCCceeeEEEecCCCCe-EEEee-cCCcEEEecCCcccccccccccccEEEEEEe
Q 012712 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTV-LASSG-IESDIKILTPNAADRATLPTNIEQVCFSIYS 435 (458)
Q Consensus 370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s 435 (458)
+|+.+.+.+.++.... ....++|+|||++ +++.. .++.|.++|+.+++......-......+++.
T Consensus 299 iD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 299 VTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred EECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEee
Confidence 9999999998887543 5889999999985 55555 5899999999999877444433334444443
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.55 E-value=7.7e-12 Score=108.15 Aligned_cols=221 Identities=10% Similarity=0.002 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
.....|+|++..++++...++.|..||..+++.. .+. ....+.+++++|+ ++++++. .+ .|.+||
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-----------~~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d 115 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-----------LPFMGSALAKISD-SKQLIAS-DD-GLFLRD 115 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-----------CSSCEEEEEEEET-TEEEEEE-TT-EEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-----------CCCcceEEEEeCC-CeEEEEE-CC-CEEEEE
Confidence 4567899986578888888899999999876532 222 1225889999997 5665544 44 499999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-------CcEEEEEccCCCCCCCCCCCCccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
..+++....... ........+..++++|+|+++++... +.|+.++ ++
T Consensus 116 ~~~g~~~~~~~~-----------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g------------- 169 (326)
T 2ghs_A 116 TATGVLTLHAEL-----------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG------------- 169 (326)
T ss_dssp TTTCCEEEEECS-----------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-------------
T ss_pred CCCCcEEEEeeC-----------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-------------
Confidence 877653211000 00011246889999999997776542 2355555 21
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEec--CC-e-----
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKK--GG-E----- 376 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~--~~-~----- 376 (458)
.. ..+..... ....++| +||++.|+.+ +.++.|.+|++. ++ +
T Consensus 170 -------------------------~~-~~~~~~~~--~~~~i~~-s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~ 220 (326)
T 2ghs_A 170 -------------------------KV-TKLFADIS--IPNSICF-SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 220 (326)
T ss_dssp -------------------------EE-EEEEEEES--SEEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred -------------------------cE-EEeeCCCc--ccCCeEE-cCCCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence 11 11111111 2467888 9999876544 557899999985 55 3
Q ss_pred EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEe-cCCcEEEe
Q 012712 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYS-ADYWWSKS 443 (458)
Q Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s 443 (458)
....+......+..+++.++|.+.++...++.|.+|+........+..+...+++++|+ |++..|..
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLV 288 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence 22233334456788999999998877766789999998543333444445569999999 89866543
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.54 E-value=2.8e-12 Score=121.89 Aligned_cols=213 Identities=13% Similarity=0.071 Sum_probs=123.6
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-Cce-EEEEEecCCCEEEEecCCCeEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+.+|++++.++.|.-+|..+|+.+-+........ ...... ..+ ..+.+ ++..|+.++.|+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH------------RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGG------------GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc------------ccccccccCCCCccEE--ECCEEEEEccCCEEEE
Confidence 5567788888999999999999875511000000 000000 000 11222 3567888889999999
Q ss_pred EECCCcceeeeeccC-CCcceeEEEEccCC-CCeEEEEEc-----CCCcEEEeecccccceeeeeccc------------
Q 012712 88 WDWKTERVKLSFHSG-HNDNVFQAKIMPFT-DDRSIVTCA-----ADGQVRHAQILERGGVETKLLGK------------ 148 (458)
Q Consensus 88 wd~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~------------ 148 (458)
+|.++|+.+..+... +......+..+|.- ++..++..+ .+|.|..||..+++.+.......
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999988776432 21111111111100 454444332 36899999999998765532211
Q ss_pred -----------------cccceEEEEEcCCCCeEEEEecCCC-------------------eEEEEeCCCCCccceeeec
Q 012712 149 -----------------HQGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFTCR 192 (458)
Q Consensus 149 -----------------~~~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 192 (458)
....-..++++|+. .+++.+..++ .|..+|.++++.+..++..
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~ 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred cccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC
Confidence 00111257888877 5677777765 3999999999988777643
Q ss_pred ccCCCCcceeecceEEEEECCCCCc---EEEEecCCCeEEEEecCCCccC
Q 012712 193 PIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
..... ......++.......+ +. .++.++.+|.++++|.++++.+
T Consensus 295 ~~d~w-d~~~~~~~~l~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 295 PGDAW-DYTATQHMILAELPID-GKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp TTCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred Ccccc-cccCCCCcEEEeeccC-CcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 21100 0001111111122223 33 7889999999999999998754
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.54 E-value=2.1e-12 Score=123.63 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=83.2
Q ss_pred ecCCCceEEEEEecCCCEEEE-----ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC----
Q 012712 58 DKHRGCVNTVSFNTDGDILIS-----GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---- 128 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---- 128 (458)
.+|...+..++|||||++||- |+....|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws---Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL---GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE---TTTEEEEEESSCCC--
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe---CCCEEEEEEecCcccc
Confidence 356678999999999999984 3344689999999998654321 11123567887 677777777663
Q ss_pred ---------cEEEeecccccceeeeec--cc-cccceEEEEEcCCCCeEEEEecC---CCeEEEEeCCCCC
Q 012712 129 ---------QVRHAQILERGGVETKLL--GK-HQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGA 184 (458)
Q Consensus 129 ---------~i~vw~~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 184 (458)
.|++|++.++.......+ .. |......+.|+|++..++++.+. ...|+++|+.++.
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 399999877654222212 23 44457789999999666565543 3589999988764
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.53 E-value=1.9e-13 Score=118.49 Aligned_cols=180 Identities=7% Similarity=-0.008 Sum_probs=125.9
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i 284 (458)
+++.+++++. ..++++|+.++ +.+|++...+...... ... +.+.... .... |+.++| ++.+|+++.++.|
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~~-~~~~~~~-~lp~-V~~l~f--d~~~L~v~~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSD---STP-LTFKWEK-EIPD-VIFVCF--HGDQVLVSTRNAL 108 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSS---SCC-CCCSEEE-ECTT-EEEEEE--ETTEEEEEESSEE
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccc---ccc-ccceEEe-eCCC-eeEEEE--CCCEEEEEcCCcE
Confidence 5789999998 56888888875 6679976554100000 000 1111112 2345 999999 8899999877789
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
++||+.+.. .......+... +.++.+..|+ +++++.|
T Consensus 109 ~v~dv~sl~--------------------------------------~~~~~~~~~~~--v~~i~~~~p~---~av~~~d 145 (388)
T 1xip_A 109 YSLDLEELS--------------------------------------EFRTVTSFEKP--VFQLKNVNNT---LVILNSV 145 (388)
T ss_dssp EEEESSSTT--------------------------------------CEEEEEECSSC--EEEEEECSSE---EEEEETT
T ss_pred EEEEchhhh--------------------------------------ccCccceeecc--eeeEEecCCC---EEEEECC
Confidence 999988732 11222333332 5566663332 8888999
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc---ccc------c---cccccEEEE
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR---ATL------P---TNIEQVCFS 432 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~---~~~------~---~~~~~v~~~ 432 (458)
|.|.+||+.++.... +...|++++|||+| ++.|..||++++|+....+. ..+ . .|...|.++
T Consensus 146 G~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI 219 (388)
T 1xip_A 146 NDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV 219 (388)
T ss_dssp SEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred CCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE
Confidence 999999998877653 34579999999999 67889999999999887763 233 1 356779999
Q ss_pred EEecCCcEEEe
Q 012712 433 IYSADYWWSKS 443 (458)
Q Consensus 433 ~~s~d~~~l~s 443 (458)
.|.+++.++++
T Consensus 220 ~wl~~~~flv~ 230 (388)
T 1xip_A 220 TILSPQDFLAV 230 (388)
T ss_dssp EESSSSEEEEE
T ss_pred EEecCCeEEEE
Confidence 99999999887
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.53 E-value=6.1e-12 Score=107.86 Aligned_cols=229 Identities=11% Similarity=0.048 Sum_probs=145.6
Q ss_pred cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (458)
.........|+|++..++++...++.|..|+. +++ ...+.. ....+..++++++ ++++++...++.|
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~----------~~~~~~gl~~d~d-G~l~v~~~~~~~v 109 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD----------ATAFTNGNAVDAQ-QRLVHCEHGRRAI 109 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE----------SCSCEEEEEECTT-SCEEEEETTTTEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC----------CCCccceeeECCC-CCEEEEECCCCEE
Confidence 44456789999999668888888999999997 444 233321 2235789999998 5666665666789
Q ss_pred EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE----ec--------------CCcEEEEEcc
Q 012712 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS----YN--------------DEFIYLFTQD 290 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~--------------~~~i~i~~~~ 290 (458)
.+|+.. ++..... ..........+..++++|+|+++++ +. .+.|+.|+..
T Consensus 110 ~~~~~~-g~~~~~~-----------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 110 TRSDAD-GQAHLLV-----------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEECTT-SCEEEEE-----------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCC-CCEEEEE-----------eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 999875 3311000 0001111234678999999998886 32 1246666654
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC------
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC------ 364 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d------ 364 (458)
++. ...+. ... ....++| +||++.|+.+...
T Consensus 178 ~g~---------------------------------------~~~~~-~~~--~p~gl~~-spdg~~lyv~~~~~~~~~~ 214 (305)
T 3dr2_A 178 GSP---------------------------------------LQRMA-DLD--HPNGLAF-SPDEQTLYVSQTPEQGHGS 214 (305)
T ss_dssp SCC---------------------------------------CEEEE-EES--SEEEEEE-CTTSSEEEEEECCC---CC
T ss_pred CCc---------------------------------------EEEEe-cCC--CCcceEE-cCCCCEEEEEecCCcCCCC
Confidence 321 11111 111 2567888 9999988776654
Q ss_pred CeEEEEEecCCeEE--EEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEE
Q 012712 365 GRIFIWKKKGGELI--RVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWS 441 (458)
Q Consensus 365 g~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 441 (458)
+.|++|++..+... ..+ ....+.+..++++++|++.++. .+ .|.+|+.+......+..+ ..+.+++|+|+++.|
T Consensus 215 ~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~~~~~~~~-~~~~~~~f~~d~~~L 291 (305)
T 3dr2_A 215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQLLGHIPTP-GTASNCTFDQAQQRL 291 (305)
T ss_dssp CEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCEEEEEECS-SCCCEEEECTTSCEE
T ss_pred CEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCEEEEEECC-CceeEEEEeCCCCEE
Confidence 78999999765411 111 1123446788999999965544 44 499999865444333333 358899999999887
Q ss_pred EeeecCC
Q 012712 442 KSQNFSC 448 (458)
Q Consensus 442 ~s~~~d~ 448 (458)
..++.++
T Consensus 292 ~it~~~~ 298 (305)
T 3dr2_A 292 FITGGPC 298 (305)
T ss_dssp EEEETTE
T ss_pred EEEcCCe
Confidence 7766654
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=1.3e-10 Score=100.53 Aligned_cols=230 Identities=12% Similarity=0.087 Sum_probs=141.5
Q ss_pred CceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 62 GCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 62 ~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
....+..|+|++ .++++...++.|..||.++++.. .+ .....+.+++|+| +++++++. .+ .|.+||..+++.
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE--ECCCcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCcE
Confidence 345678999975 45666667789999999877643 23 2346799999999 99887765 33 499999877654
Q ss_pred eeeeecc--ccccceEEEEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 141 VETKLLG--KHQGRAHKLAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 141 ~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
....... .....+..++++|+| +++++... .+.|..++ +++...... .......++|+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-----------~~~~~~~i~~s 187 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-----------DISIPNSICFS 187 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-----------EESSEEEEEEC
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-----------CCcccCCeEEc
Confidence 3221111 112468899999999 45554432 24455555 333221111 11235677888
Q ss_pred CCCCcEEEEecCCCeEEEEecC--CC-ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712 213 PRNANLFAVAGSDEYTRLYDIR--KY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~ 289 (458)
|++..++++...++.|.+||+. ++ +.. +.+.+.
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~--------------------------------~~~~~~------------ 223 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------------------------------KAEVFI------------ 223 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------------------------------CCEEEE------------
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCccc--------------------------------CceEEE------------
Confidence 8733333444556778888764 22 100 000000
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
.+..... ....+++ +++|++.++...++.|.+
T Consensus 224 ---------------------------------------------~~~~~~~--~p~gi~~-d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 224 ---------------------------------------------DSTGIKG--GMDGSVC-DAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp ---------------------------------------------ECTTSSS--EEEEEEE-CTTSCEEEEEETTTEEEE
T ss_pred ---------------------------------------------ECCCCCC--CCCeeEE-CCCCCEEEEEeCCCEEEE
Confidence 0000001 1356676 899987777666789999
Q ss_pred EEecCCeEEEEeecCCceeeEEEec-CCCCeEEEeec
Q 012712 370 WKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSGI 405 (458)
Q Consensus 370 wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 405 (458)
|+. +++.+..+..+...+++++|+ |+++.|+.++.
T Consensus 256 ~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 998 677778887777779999998 88876655443
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.52 E-value=3.6e-11 Score=106.54 Aligned_cols=313 Identities=7% Similarity=-0.062 Sum_probs=179.1
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCC--------CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGH--------NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 144 (458)
+..++.++.++.|..+|.++++.+....... ...+.+.-. . ++..++.++.++.|..+|..+++.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-V--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-E--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-E--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 5677788888999999999999876653221 122322221 2 4557777888899999999988876554
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
...... ....... ++ .++.++.++.|..+|.++++............. .......... +..++++..
T Consensus 130 ~~~~~~--~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~---~~~v~~g~~ 196 (376)
T 3q7m_A 130 KVAGEA--LSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-----LRGESAPTTA---FGAAVVGGD 196 (376)
T ss_dssp ECSSCC--CSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCCCEEE---TTEEEECCT
T ss_pred eCCCce--EcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-----ecCCCCcEEE---CCEEEEEcC
Confidence 333211 1111122 33 567788899999999999987766553211000 0000111222 236777888
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcc
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVS 304 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 304 (458)
++.+..+|..+++..-......+........+......+ .. .++.+++...++.+..+|..+++....
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p----~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~------- 264 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP----VV-VNGVVFALAYNGNLTALDLRSGQIMWK------- 264 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCC----EE-ETTEEEEECTTSCEEEEETTTCCEEEE-------
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc----EE-ECCEEEEEecCcEEEEEECCCCcEEee-------
Confidence 999999999887654332221110000000000000001 11 134444444477899999887532111
Q ss_pred ccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec-
Q 012712 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA- 383 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 383 (458)
... . ....+.. ++..++.++.++.+..+|..+++.+.....
T Consensus 265 -------------------------------~~~--~--~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~ 306 (376)
T 3q7m_A 265 -------------------------------REL--G--SVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL 306 (376)
T ss_dssp -------------------------------ECC--C--CEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred -------------------------------ccC--C--CCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence 110 1 1223333 356777788899999999999998776652
Q ss_pred CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc-cccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN-IEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
....+..... .+..|+.++.+|.|.++|..+++....... ...+.+..... +..|..++.+|.|..|+
T Consensus 307 ~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 307 LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence 2222333333 346788888899999999998876532211 22222211112 44566778999999886
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.51 E-value=5.7e-11 Score=105.22 Aligned_cols=318 Identities=9% Similarity=0.021 Sum_probs=180.1
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec-CCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
.+.+|++++.++.|..+|.++|+.+.+.... ....... ....+.+.- ..++..++.++.++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLA-------------EKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECC-------------C---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCc-------------cccccccccCcccccCc-eEeCCEEEEEcCCCEEEE
Confidence 3567888888999999999999877431100 0000000 012232221 123556777888999999
Q ss_pred EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEEEcCCCCe
Q 012712 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPH 164 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 164 (458)
+|.++++.+.... ........... .+..++.++.++.|..+|..+++............ ........ ++
T Consensus 118 ~d~~tG~~~W~~~-~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-- 189 (376)
T 3q7m_A 118 LNTSDGTVAWQTK-VAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-- 189 (376)
T ss_dssp EETTTCCEEEEEE-CSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--
T ss_pred EECCCCCEEEEEe-CCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--
Confidence 9999999876652 22221122222 23467778889999999998888765533321110 00111222 23
Q ss_pred EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
.++.++.++.+..+|.++++.....................+ ...... +..++.++.++.+..+|.++++..-...
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE---TTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 467788899999999999987765543211000000000000 001111 2467777889999999998876432211
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (458)
......+... ++.+++...++.+..+|..+++....
T Consensus 267 -----------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~-------------------------- 302 (376)
T 3q7m_A 267 -----------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWT-------------------------- 302 (376)
T ss_dssp -----------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEE--------------------------
T ss_pred -----------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEe--------------------------
Confidence 1122333332 44455555567899999887542211
Q ss_pred CCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeE-EEecCCCCeEEE
Q 012712 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC-IEPHPHSTVLAS 402 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s 402 (458)
....... ....... .+..|+.++.+|.++.+|..+++.+.........+.. ... .+..|+.
T Consensus 303 ------------~~~~~~~-~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v 364 (376)
T 3q7m_A 303 ------------QSDLLHR-LLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLI 364 (376)
T ss_dssp ------------ECTTTTS-CCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEE
T ss_pred ------------ecccCCC-cccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEE
Confidence 1100000 0111222 2457888888999999999999998877653333322 222 2456777
Q ss_pred eecCCcEEEec
Q 012712 403 SGIESDIKILT 413 (458)
Q Consensus 403 ~~~d~~i~iw~ 413 (458)
++.+|.|..|+
T Consensus 365 ~~~~G~l~~~~ 375 (376)
T 3q7m_A 365 QAKDGTVYSIT 375 (376)
T ss_dssp EBTTSCEEEEE
T ss_pred EeCCCEEEEEe
Confidence 88899999886
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.51 E-value=5.7e-12 Score=119.51 Aligned_cols=212 Identities=12% Similarity=0.003 Sum_probs=123.7
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+.+|++++.++.|.-+|..+|+.+-+........... . ...+ ..-..+++ ++..|+.++.|+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~-------~--~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGF-------K--GCCD-VVNRGVAL--WKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGG-------G--SSSC-SCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc-------c--cccc-CCCCCceE--ECCEEEEEcCCCEEEEEE
Confidence 4567777778899999999998875411100000000 0 0000 00012233 356788888999999999
Q ss_pred CCCcceeeeeccCCC----cceeEEEEccCCCCeEEEEEcC------CCcEEEeecccccceeeeeccccc---------
Q 012712 90 WKTERVKLSFHSGHN----DNVFQAKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQ--------- 150 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~~--------- 150 (458)
..+|+.+.++..... ..+...-... ++ .++.++. +|.|..+|..+++.+.........
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVF--KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEE--CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 999998877732201 1122111111 44 4444442 689999999999876553322111
Q ss_pred ---------------------cceEEEEEcCCCCeEEEEecCCC-------------------eEEEEeCCCCCccceee
Q 012712 151 ---------------------GRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFT 190 (458)
Q Consensus 151 ---------------------~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~ 190 (458)
.....++++|++ .+++.+..++ .|..+|.++++....++
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~ 300 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ 300 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence 111357888887 4666666553 59999999999887776
Q ss_pred ecccCCCCcceeecceEEEEECCCCC---cEEEEecCCCeEEEEecCCCccC
Q 012712 191 CRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
........ .........+....+ + ..++.++.+|.++++|.++++.+
T Consensus 301 ~~~~d~wd-~~~~~~p~l~~~~~d-G~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 301 ETPGDNWD-YTSTQPMILADIKIA-GKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp SSTTCCSC-CCCCSCCEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cCCCcccc-cccCCCcEEEecccC-CcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 43211100 001112222333334 4 68899999999999999998754
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.51 E-value=3.3e-11 Score=104.67 Aligned_cols=231 Identities=12% Similarity=0.047 Sum_probs=142.3
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCC----CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC------CeEE
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTG----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTR 229 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~ 229 (458)
++++.+++.+..++.|.++|+.+. +..+.+...+..... .......+.+.|+ + +++++..+ |.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~---g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS---GYSRLHTVHCGPD-A-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH---CEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc---CCCcccceeECCC-e-EEEEcCCCcCCCCCCeEE
Confidence 778778888888999999998754 222222100000000 1123566788898 5 66665555 7899
Q ss_pred EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--------------------CCcEEEEEc
Q 012712 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--------------------DEFIYLFTQ 289 (458)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------------------~~~i~i~~~ 289 (458)
++|..+.+.......+. .....-..+.|+|+++.+++.. .++|.+||+
T Consensus 168 vlD~~T~~v~~~~~~~~------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDR------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp EECTTTCCEEEECCSBC------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred EEECCCCeEEEEEccCC------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 99999887654432211 1112234578899999888874 568999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE-ecCCCcEEEEecC-----
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSD----- 363 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~~l~~~~~----- 363 (458)
.+. +....+.-.........+.| ++|++++++++++
T Consensus 236 ~~~--------------------------------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 236 RKR--------------------------------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp TTT--------------------------------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred CCC--------------------------------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 863 22333332111111333433 4999999888774
Q ss_pred -CCeEEEEEecCCeEE--EEe--ecC----------------CceeeEEEecCCCCeEEEeec-CCcEEEecCCccc---
Q 012712 364 -CGRIFIWKKKGGELI--RVI--EAD----------------RHVVNCIEPHPHSTVLASSGI-ESDIKILTPNAAD--- 418 (458)
Q Consensus 364 -dg~i~iwd~~~~~~~--~~~--~~~----------------~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~~~~--- 418 (458)
+++|.+|..+.++.. +.+ ... ...+..+.+||||++|.++.. .+.|.+|++....
T Consensus 278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~ 357 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV 357 (462)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE
T ss_pred CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 568888877655321 111 110 134788999999998877655 6899999986331
Q ss_pred cc-ccccc--------------cccEEEEEEecCCcEEEeee
Q 012712 419 RA-TLPTN--------------IEQVCFSIYSADYWWSKSQN 445 (458)
Q Consensus 419 ~~-~~~~~--------------~~~v~~~~~s~d~~~l~s~~ 445 (458)
+. .+... .+.-..+++||||++|..+.
T Consensus 358 lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 358 LTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 11 11111 01257799999999998877
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.50 E-value=2.4e-11 Score=104.14 Aligned_cols=239 Identities=10% Similarity=0.032 Sum_probs=151.5
Q ss_pred EeecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712 56 KLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~ 134 (458)
.+..+........|+|+|+ ++++...++.|..|+. +++. ..+ ..+...+..+++++ +++++++...++.|.+|+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~-~~~~~~~~gl~~d~--dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVL-LDATAFTNGNAVDA--QQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEE-EESCSCEEEEEECT--TSCEEEEETTTTEEEEEC
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEE-eCCCCccceeeECC--CCCEEEEECCCCEEEEEC
Confidence 3445556678899999998 6677777899999997 4443 333 34566789999999 998777766678899999
Q ss_pred cccccceeee-eccc-cccceEEEEEcCCCCeEEEE----ecC-------------CCeEEEEeCCCCCccceeeecccC
Q 012712 135 ILERGGVETK-LLGK-HQGRAHKLAIEPGSPHVFYT----CGE-------------DGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 135 ~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
.. ++..... ...+ ....+..++++|+| .++++ +.. .+.|..+|..+++..... .
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~---- 186 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D---- 186 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E----
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c----
Confidence 75 4322110 0111 12346789999999 56665 332 256888887766644322 1
Q ss_pred CCCcceeecceEEEEECCCCCcEEEEecCC------CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEe
Q 012712 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (458)
......++|+|+ ++.|+++... +.|++|++........ .............+++
T Consensus 187 -------~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~------------~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 187 -------LDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDR------------RHFASVPDGLPDGFCV 246 (305)
T ss_dssp -------ESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEE------------EEEECCSSSCCCSEEE
T ss_pred -------CCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCC------------eEEEECCCCCCCeEEE
Confidence 113578999998 5666665554 7899999875431000 0011111234567899
Q ss_pred CCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEE
Q 012712 270 SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (458)
Q Consensus 270 ~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (458)
+++|++.++. .+.|.+|+... .....+.... .+.+++
T Consensus 247 d~~G~lwv~~-~~gv~~~~~~g---------------------------------------~~~~~~~~~~---~~~~~~ 283 (305)
T 3dr2_A 247 DRGGWLWSSS-GTGVCVFDSDG---------------------------------------QLLGHIPTPG---TASNCT 283 (305)
T ss_dssp CTTSCEEECC-SSEEEEECTTS---------------------------------------CEEEEEECSS---CCCEEE
T ss_pred CCCCCEEEec-CCcEEEECCCC---------------------------------------CEEEEEECCC---ceeEEE
Confidence 9999966555 55699998743 2233333332 267788
Q ss_pred EecCCCcEEEEecCCCeEEEEE
Q 012712 350 FFGPKCEYVVSGSDCGRIFIWK 371 (458)
Q Consensus 350 ~~s~~~~~l~~~~~dg~i~iwd 371 (458)
| +++++.|+.++.++ ++.++
T Consensus 284 f-~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 284 F-DQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp E-CTTSCEEEEEETTE-EEEEE
T ss_pred E-eCCCCEEEEEcCCe-EEEEE
Confidence 8 89998888777654 44333
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=1.4e-11 Score=118.05 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=147.8
Q ss_pred cccceEEEEEcCCCCeEEEEecCC----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
+...+..++|+|||..++++.+.. ..|++||+.+++...... .......++|+ | ++.|+.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-----------~~~k~~~~~Ws-D-g~~l~y~~~ 193 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-----------KDVKFSGISWL-G-NEGFFYSSY 193 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-----------EEEESCCCEEE-T-TTEEEEEES
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-----------CCceeccEEEe-C-CCEEEEEEe
Confidence 445688899999996555444333 479999999998644311 11123577899 8 566666665
Q ss_pred CC-------------eEEEEecCCCccCCCccCCCCCCCcCCCcccc--c-cccceeEEEeCCCCcEEEEec----C-Cc
Q 012712 225 DE-------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG--D-EQVGITGLAFSDQSELLVSYN----D-EF 283 (458)
Q Consensus 225 dg-------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~l~~~~----~-~~ 283 (458)
+. .|++|++.+...... .+.. . +......+.|+|||++|+... . ..
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDR-------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCE-------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred cCcccccccccCCCcEEEEEECCCCcccce-------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 53 499999877542111 1111 1 233567899999999876433 1 26
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-Eec
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGS 362 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~ 362 (458)
++++|+.++. .....+..+... .... + +++|+.|+ ...
T Consensus 261 i~~~d~~~~~-------------------------------------~~~~~l~~~~~~--~~~~-~-~~~g~~l~~~t~ 299 (693)
T 3iuj_A 261 LYVKDLSQEN-------------------------------------APLLTVQGDLDA--DVSL-V-DNKGSTLYLLTN 299 (693)
T ss_dssp EEEEETTSTT-------------------------------------CCCEEEECSSSS--CEEE-E-EEETTEEEEEEC
T ss_pred EEEEECCCCC-------------------------------------CceEEEeCCCCc--eEEE-E-eccCCEEEEEEC
Confidence 8999987631 122334333332 2222 3 55555554 443
Q ss_pred C---CCeEEEEEecCCeE--EEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCcccccccc-cccccEEEEE
Q 012712 363 D---CGRIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLP-TNIEQVCFSI 433 (458)
Q Consensus 363 ~---dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~-~~~~~v~~~~ 433 (458)
. .+.|..+++.++.. .+.+..|...+. .|+++++.|+....++ .|++|++.++....+. ...+.+..+.
T Consensus 300 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~ 377 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFN 377 (693)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECC
T ss_pred CCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeee
Confidence 3 36899999987654 345666665554 8999999887765544 6899999876554433 2345577888
Q ss_pred EecCCcEEEeeecC----CceEEEE
Q 012712 434 YSADYWWSKSQNFS----CSILLFE 454 (458)
Q Consensus 434 ~s~d~~~l~s~~~d----~~i~~w~ 454 (458)
++|++..++....+ +.|..||
T Consensus 378 ~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 378 GKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp CCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred cCCCCCEEEEEecCCCCCCEEEEEE
Confidence 89999666554433 5666665
No 230
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.46 E-value=1.7e-09 Score=105.54 Aligned_cols=327 Identities=10% Similarity=0.080 Sum_probs=197.3
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 143 (458)
|.++...+++.+.+ ++.++-|..|+..+++............|.++...+ ++.+.+.. .++.+..|+..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g~lwigt-~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PTRIWVAT-EGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TTEEEEEE-BSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CCCEEEEE-CCCCeEEEeCCCCeEEEe
Confidence 88898888887555 555445889998776643322122356788888887 77765544 334488888766543221
Q ss_pred eec-----cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 144 KLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 144 ~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
... .-....|.++...+++ . +..|+.+ -|.+||..+++...... ... .........|.++...++ + .
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~-~~~--~~~~l~~~~i~~i~~D~~-g-~ 322 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSS-NPV--ENGSLSQRSVRSIFMDSQ-G-G 322 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECC-CTT--STTSCSSSCEEEEEECTT-S-C
T ss_pred ecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEec-CCC--CCCCCCCCcEEEEEEeCC-c-C
Confidence 100 0123568999999888 4 4445555 58889987664332111 100 000112346899999887 3 4
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~ 298 (458)
+..|+.++-|..|+..+......... .....-....|.++...++|.+.+...++.+..|+..++..
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~~---------~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~---- 389 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRNI---------PYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF---- 389 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECCC---------TTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE----
T ss_pred EEEEECCCCeEEeCCCcccceEEcCC---------CCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE----
Confidence 66677777799998765532110000 00001123568999999999877766666899998765321
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecC-------ccceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-------HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd 371 (458)
..+.. ......|.+++. +++|+.|..|+.++-|.+||
T Consensus 390 -----------------------------------~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 390 -----------------------------------TSYTLQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp -----------------------------------EEECCC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEE
T ss_pred -----------------------------------EEEecCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEe
Confidence 01100 000113788887 88888566677777899999
Q ss_pred ecCCeEEEEee----cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc-------ccccEEEEEEecCCcE
Q 012712 372 KKGGELIRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-------NIEQVCFSIYSADYWW 440 (458)
Q Consensus 372 ~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-------~~~~v~~~~~s~d~~~ 440 (458)
..+++...... .....|.++...++|.+.+... +-|.+|+..+++...+.. ....|.++...++|.+
T Consensus 434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 511 (795)
T 4a2l_A 434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL 511 (795)
T ss_dssp TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence 87776433221 1345689999988888665443 458889988765443321 1245899999999955
Q ss_pred EEeeecCCceEEEEE
Q 012712 441 SKSQNFSCSILLFEW 455 (458)
Q Consensus 441 l~s~~~d~~i~~w~~ 455 (458)
.+.. . +-|..|+.
T Consensus 512 Wigt-~-~Gl~~~~~ 524 (795)
T 4a2l_A 512 WIGG-E-EGLSVFKQ 524 (795)
T ss_dssp EEEE-S-SCEEEEEE
T ss_pred EEEe-C-CceEEEeC
Confidence 4332 3 34666653
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.43 E-value=9.3e-12 Score=108.22 Aligned_cols=296 Identities=13% Similarity=0.062 Sum_probs=178.8
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+..|..++.++.|..|| .+|+.+.. ...+...+.++...++|. |..++.+ |..+|
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~---------------------~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d 84 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWF---------------------FKSGEIIECRPSIGKDGT-IYFGSDK--VYAIN 84 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEES---------------------SCGGGEEEECCEETTTTE-ECCSSCE--EEEEC
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEE---------------------EecCCCcccceEEecCCc-EEEecCc--EEEEC
Confidence 34567777788888999 77776532 222334556777777775 4455554 88888
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (458)
. +++....+ ............. +..|..++.++.+..+|.. ++.... .......+.++...+++ . ++.+
T Consensus 85 ~-~g~~~~~~-~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~--~~~~~~~~~~~~~~~~g-~-l~vg 153 (330)
T 3hxj_A 85 P-DGTEKWRF-DTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWR--FKTKKAIYATPIVSEDG-T-IYVG 153 (330)
T ss_dssp C-CGGGGGGS-CC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEE--EECSSCCCSCCEECTTS-C-EEEE
T ss_pred C-CCcEEEEE-ECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEE--EcCCCceeeeeEEcCCC-E-EEEE
Confidence 6 56554443 2222222233332 3456777778899999987 554443 22233445666777777 4 5667
Q ss_pred cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (458)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (458)
+.++.|..+|.. ++....+... ...+.++...++ +. +..++ +.|..+| .+++....
T Consensus 154 t~~~~l~~~d~~-g~~~~~~~~~----------~~~~~~~~~d~~-g~-l~v~t--~~l~~~d-~~g~~~~~-------- 209 (330)
T 3hxj_A 154 SNDNYLYAINPD-GTEKWRFKTN----------DAITSAASIGKD-GT-IYFGS--DKVYAIN-PDGTEKWN-------- 209 (330)
T ss_dssp CTTSEEEEECTT-SCEEEEEECS----------SCCCSCCEECTT-CC-EEEES--SSEEEEC-TTSCEEEE--------
T ss_pred cCCCEEEEECCC-CCEeEEEecC----------CCceeeeEEcCC-CE-EEEEe--CEEEEEC-CCCcEEEE--------
Confidence 788999999988 7655544321 123556667665 44 44455 7799999 55432211
Q ss_pred CcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (458)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (458)
.......+.++...++|.+.+...++.+..++....
T Consensus 210 -------~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~------------------------------------- 245 (330)
T 3hxj_A 210 -------FYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT------------------------------------- 245 (330)
T ss_dssp -------ECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC-------------------------------------
T ss_pred -------EccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC-------------------------------------
Confidence 111224577888888888777766778888864321
Q ss_pred ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcE
Q 012712 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (458)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i 409 (458)
....+..... .+..+.. .+++ .|..++.+|.|..+|. +++.+..+......+.++...++|++. .++.+|.+
T Consensus 246 --~~~~~~~~~~--~~~~~~~-~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~ 317 (330)
T 3hxj_A 246 --EKWRFKTGKR--IESSPVI-GNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKF 317 (330)
T ss_dssp --EEEEEECSSC--CCSCCEE-CTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCE
T ss_pred --EeEEeeCCCC--ccccceE-cCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeE
Confidence 1111111111 1223333 5555 4556777889999996 777777776556667788887887754 57889999
Q ss_pred EEecCCcc
Q 012712 410 KILTPNAA 417 (458)
Q Consensus 410 ~iw~~~~~ 417 (458)
++...+..
T Consensus 318 ~~~~~~~~ 325 (330)
T 3hxj_A 318 YALFNLEH 325 (330)
T ss_dssp EEEEC---
T ss_pred EEEecccc
Confidence 98876543
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.41 E-value=1.1e-11 Score=107.87 Aligned_cols=298 Identities=10% Similarity=0.061 Sum_probs=177.5
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee
Q 012712 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 145 (458)
++.+..++. |..++.++.|..|| .+++..... ......+.++...+ ++. |..++.+ +..+|. +++....
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~--~g~-l~v~t~~--l~~~d~-~g~~~~~-- 92 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGK--DGT-IYFGSDK--VYAINP-DGTEKWR-- 92 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETT--TTE-ECCSSCE--EEEECC-CGGGGGG--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEec--CCc-EEEecCc--EEEECC-CCcEEEE--
Confidence 344545554 56677788899999 888776554 23344456677765 665 4445444 888885 4444332
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
............+. ++ .++.++.++.|..+|.. ++........ ...+.++...++ + .++.++.+
T Consensus 93 ~~~~~~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~-g~~~~~~~~~----------~~~~~~~~~~~~-g-~l~vgt~~ 156 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF-ED--ILYVTSMDGHLYAINTD-GTEKWRFKTK----------KAIYATPIVSED-G-TIYVGSND 156 (330)
T ss_dssp SCC-----CCEEEE-TT--EEEEECTTSEEEEECTT-SCEEEEEECS----------SCCCSCCEECTT-S-CEEEECTT
T ss_pred EECCCCcccCceEE-CC--EEEEEecCCEEEEEcCC-CCEEEEEcCC----------CceeeeeEEcCC-C-EEEEEcCC
Confidence 22122222223333 43 46778888999999988 6654443321 112455566665 3 46667888
Q ss_pred CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
+.|..+|.. ++..... ......+.++...+++.+++.. +.+..+| .++..
T Consensus 157 ~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~----------- 206 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRF---------------KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE----------- 206 (330)
T ss_dssp SEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE-----------
T ss_pred CEEEEECCC-CCEeEEE---------------ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE-----------
Confidence 999999987 5432111 1112345667777888766655 8899998 44211
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (458)
...+..... .+.++.. +++|.+ ..++.++.+..+|. +++.+..+....
T Consensus 207 ---------------------------~~~~~~~~~--~~~~~~~-~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~ 254 (330)
T 3hxj_A 207 ---------------------------KWNFYAGYW--TVTRPAI-SEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGK 254 (330)
T ss_dssp ---------------------------EEEECCSSC--CCSCCEE-CTTSCE-EEEETTTEEEEECT-TSCEEEEEECSS
T ss_pred ---------------------------EEEEccCCc--ceeceEE-CCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCC
Confidence 111111111 2556666 777754 45666788888874 666666666554
Q ss_pred ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
..+..+...+++. |..++.+|.|..++. +++.. ........+.++...++|.+. .++.+|.+++...
T Consensus 255 ~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 255 RIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFN 322 (330)
T ss_dssp CCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC
T ss_pred CccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEec
Confidence 4455666666664 556777888999996 44332 332233446677777888755 5788998887654
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.40 E-value=4.2e-14 Score=124.31 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=79.1
Q ss_pred CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc
Q 012712 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (458)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 151 (458)
++..+++++.|+.|..||..+|+.+.++. . +.+.+..+.+ ++..+++++.||.|..||..+++.+.. ...+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccCc
Confidence 57789999999999999999999988773 2 4555555555 777888888999999999988876544 222211
Q ss_pred -ceE-EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712 152 -RAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (458)
Q Consensus 152 -~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (458)
.+. +..+. .+ ..+++++.++.++.||.++++....+.... ...++|+ +..+++++.++.|+
T Consensus 81 ~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--------------~~~~~p~-~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 81 ELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--------------ADSLSPS-TSLLYLGRTEYTIT 143 (369)
T ss_dssp HHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------------EEEEEEEEEEE
T ss_pred cccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC--------------ccccccc-CCEEEEEecCCEEE
Confidence 111 01111 23 357788889999999999998876654211 1234565 56788888889999
Q ss_pred EEecCCCc
Q 012712 230 LYDIRKYK 237 (458)
Q Consensus 230 i~d~~~~~ 237 (458)
.||.++++
T Consensus 144 a~d~~tG~ 151 (369)
T 2hz6_A 144 MYDTKTRE 151 (369)
T ss_dssp CCCSSSSS
T ss_pred EEECCCCC
Confidence 99988765
No 234
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.39 E-value=6.4e-08 Score=94.47 Aligned_cols=329 Identities=9% Similarity=0.030 Sum_probs=196.8
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec------cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~ 134 (458)
...|.++...++|.+.+ |+.+| |.+|+..++....... .-....|.++...+ +|. |..|+.++-|..++
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--~g~-lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS--QGG-MWLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT--TSC-EEEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC--CcC-EEEEECCCCeEEeC
Confidence 36799999998887655 44444 8899987765432211 11235799999987 765 55566667788888
Q ss_pred cccccceeeeecc----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 135 ILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 135 ~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
..+.......... -....|.++...+++ . |..|+.++-|..||..+++........... ........|.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~--~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFTSYTLQEDES--ARGIGSNNIKAVY 412 (795)
T ss_dssp GGGGSSEEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEEEECCC--------CCSCSCEEEEE
T ss_pred CCcccceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEEEEecCCCCc--ccCCCCccEEEEE
Confidence 7654322111000 123568999998888 4 566777777999998776543221100000 0000224688998
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~ 290 (458)
..++ ++.|..|+.++-|..||..+++...... . ........|.++...++|.+.+... +.+.+|+..
T Consensus 413 ~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~~~~----------~-~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 413 VDEK-KSLVYIGTHAGGLSILHRNSGQVENFNQ----------R-NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE 479 (795)
T ss_dssp EETT-TTEEEEEETTTEEEEEETTTCCEEEECT----------T-TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT
T ss_pred EcCC-CCEEEEEeCcCceeEEeCCCCcEEEeec----------C-CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC
Confidence 8876 5547777777779999988765321100 0 0001235789999999998777665 679999976
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
++..... . ... .........|.++.. +++|++.+... +-+..|
T Consensus 480 ~~~~~~~-~--------------------------------~~~-~~~~~~~~~i~~i~~-d~~g~lWigt~--~Gl~~~ 522 (795)
T 4a2l_A 480 QRSFTTI-E--------------------------------KEK-DGTPVVSKQITTLFR-DSHKRLWIGGE--EGLSVF 522 (795)
T ss_dssp TTEEEEC-C--------------------------------BCT-TCCBCCCCCEEEEEE-CTTCCEEEEES--SCEEEE
T ss_pred CCeEEEc-c--------------------------------ccc-cccccCCceEEEEEE-CCCCCEEEEeC--CceEEE
Confidence 5311000 0 000 000001123778877 88887666544 458889
Q ss_pred EecCCeEEEEee-------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc----cccEEEEEEecCCc
Q 012712 371 KKKGGELIRVIE-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN----IEQVCFSIYSADYW 439 (458)
Q Consensus 371 d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----~~~v~~~~~s~d~~ 439 (458)
|..+++. .+. .....|.++...++|.+.++.. . -|..|+..+++...+... ...|.++...++|.
T Consensus 523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~ 598 (795)
T 4a2l_A 523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGR 598 (795)
T ss_dssp EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSC
T ss_pred eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCC
Confidence 9887765 332 1234688999999998666443 3 678888876654433211 23488899998886
Q ss_pred EEEeeecCCceEEEE
Q 012712 440 WSKSQNFSCSILLFE 454 (458)
Q Consensus 440 ~l~s~~~d~~i~~w~ 454 (458)
+.++. .. -|..|+
T Consensus 599 lWi~t-~~-Gl~~~~ 611 (795)
T 4a2l_A 599 LWLST-NR-GISCFN 611 (795)
T ss_dssp EEEEE-TT-EEEEEE
T ss_pred EEEEc-CC-ceEEEc
Confidence 55443 33 344443
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.33 E-value=3.5e-13 Score=118.45 Aligned_cols=184 Identities=12% Similarity=0.020 Sum_probs=105.6
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (458)
++.+|++++.||.|+.||..+|+.+.+ +.. +.+.+..+..++..+++++.|+.|+.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---------------------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~ 64 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---------------------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTL 64 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---------------------EEC--CCSCCCC-----CCEEECTTTCCEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---------------------ecC--CCceecceEcCCCEEEEeCCCCEEEEE
Confidence 467899999999999999999998744 222 344455556678788888899999999
Q ss_pred ECCCcceeeeeccCCCc-ceeEEEEccCC-CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712 89 DWKTERVKLSFHSGHND-NVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (458)
Q Consensus 89 d~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (458)
|.++++.+..+. .+.. .+. .+|.. ++..+++++.++.+..||..+++.... +..+. ...++|++ ..+
T Consensus 65 d~~tG~~~w~~~-~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~--~~~~~----~~~~~p~~-~~v 133 (369)
T 2hz6_A 65 GSKNNEGLTKLP-FTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT--LSSAF----ADSLSPST-SLL 133 (369)
T ss_dssp -----CCSEECS-CCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC-----------------------------E
T ss_pred ECCCCceeeeee-ccCccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEE--ecCCC----cccccccC-CEE
Confidence 999888765552 2211 111 11211 445677888899999999999887654 33222 23456666 578
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC--CcEEEEecCCCeEEEEecCCCcc
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
++++.|+.|+.||.++++....+.... ....++.++. ...+++++.+|.++.||.++++.
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc------------ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 888999999999999998776654211 1222333321 14677788999999999998764
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=2.9e-10 Score=108.13 Aligned_cols=316 Identities=10% Similarity=-0.004 Sum_probs=171.4
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec------CC
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------DD 82 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~d 82 (458)
.+.+|+.++.|+.|..+|.+||+.+.+..... +. .........++ + .++. ++.++ .+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~-----~~------~~~~~~~~sP~----v-~~g~-v~vg~~~~~~~~~ 182 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA-----DH------KRSYTITGAPR----V-VNGK-VVIGNGGAEFGVR 182 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCS-----CT------TSCCBCCSCCE----E-ETTE-EEECCBCTTTCCB
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcC-----CC------CCCccccCCcE----E-ECCE-EEEEeCCCccCCC
Confidence 35678889999999999999999875411000 00 00000001111 1 1444 44443 36
Q ss_pred CeEEEEECCCcceeeeeccCC------------------------------CcceeEEEEccCCCCeEEEEEcCCCc---
Q 012712 83 RRVILWDWKTERVKLSFHSGH------------------------------NDNVFQAKIMPFTDDRSIVTCAADGQ--- 129 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~------------------------------~~~i~~~~~~~~~~~~~l~s~~~dg~--- 129 (458)
+.|..||..+|+.+.++.... ......+++.| +..+++.+..++.
T Consensus 183 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 183 GYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSC
T ss_pred CEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccc
Confidence 899999999999877663211 01112578888 8888888887763
Q ss_pred ----------------EEEeecccccceeeeeccccc-------cceEEEEEcCCCC--eEEEEecCCCeEEEEeCCCCC
Q 012712 130 ----------------VRHAQILERGGVETKLLGKHQ-------GRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGA 184 (458)
Q Consensus 130 ----------------i~vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~ 184 (458)
|..+|..+++.+.......|. .+........++. ..++.++.+|.++++|.++++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 999999999887664433332 1122222222441 378889999999999999998
Q ss_pred ccceeeecccCC-----------------------CC------cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 185 ATELFTCRPIDD-----------------------RR------NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 185 ~~~~~~~~~~~~-----------------------~~------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
.+.........- .. +......-..++++|+ ..++++...+....++....
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~ 419 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD-TGLVYIPAHIMSAYYEHIPE 419 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT-TTEEEEEEEECCEEEECCSS
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC-CCEEEEeccccceeeeeccc
Confidence 874433221000 00 0000001123678887 45777776665555544332
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC---cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
... .. .. ...... +.. +...|.. ....... ++.++.||+.+++...
T Consensus 420 ~~~-~~--~~-------~~~~~~---g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W--------------- 469 (689)
T 1yiq_A 420 APK-RN--PF-------KSMYQL---GLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW--------------- 469 (689)
T ss_dssp CCC-CC--SC-------TTSCCC---SSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE---------------
T ss_pred ccc-cc--cc-------cccccc---Ccc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEe---------------
Confidence 100 00 00 000000 000 0001100 0000001 2467888887753221
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce-eeE
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV-VNC 390 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~ 390 (458)
.+..+.. .....+ ...+.+++.|+.||.++.||.++|+.+.+++...+. ..-
T Consensus 470 -----------------------~~~~~~~---~~~g~~-~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 522 (689)
T 1yiq_A 470 -----------------------EVPYVTI---FNGGTL-STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAP 522 (689)
T ss_dssp -----------------------EEEESSS---CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred -----------------------EccCCCC---ccCccc-eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCc
Confidence 1111111 111223 556778999999999999999999999888755332 244
Q ss_pred EEecCCCCeEE
Q 012712 391 IEPHPHSTVLA 401 (458)
Q Consensus 391 ~~~s~~~~~l~ 401 (458)
+.|..+|+..+
T Consensus 523 ~ty~~~G~qyv 533 (689)
T 1yiq_A 523 VTYSVDGEQYV 533 (689)
T ss_dssp EEEEETTEEEE
T ss_pred eEEEECCEEEE
Confidence 66778887543
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.32 E-value=1.1e-08 Score=85.68 Aligned_cols=252 Identities=11% Similarity=0.053 Sum_probs=150.4
Q ss_pred CEEEEecCCCeEEEEECCCccee----eeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccceeeeeccc
Q 012712 74 DILISGSDDRRVILWDWKTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGK 148 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~ 148 (458)
++|+.+.. +.|+.++++..... ..........+..++|.| ++..|+ +-..++.|..++......... ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTI--IRQ 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEE--ECT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEEE--EEC
Confidence 34555443 47888887754321 111111234578999998 655554 555578999999865443221 222
Q ss_pred cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC--CC
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--DE 226 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg 226 (458)
.......++++|++..++++....+.|.++++...... .+... .......++++|+++.++++... .+
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~---------~~~~P~~i~vd~~~g~lyv~~~~~~~~ 146 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT---------GLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS---------SCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC---------CCCCccEEEEeeCCCEEEEEECCCCCc
Confidence 22467899999976577777777889999998754322 22110 11246889999974555554433 46
Q ss_pred eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcc
Q 012712 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVS 304 (458)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~ 304 (458)
.|..+++..... ..+..........++++|++..|..+. .+.|..++....
T Consensus 147 ~I~~~~~dg~~~---------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~------------ 199 (267)
T 1npe_A 147 KIETSHMDGTNR---------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP------------ 199 (267)
T ss_dssp EEEEEETTSCCC---------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE------------
T ss_pred EEEEEecCCCCc---------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC------------
Confidence 888888754221 011111224578899999876555444 447999987641
Q ss_pred ccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC
Q 012712 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (458)
.....+.+... ...++. . ++..+++...++.|.++|..+++.+.++...
T Consensus 200 --------------------------~~~~~~~~~~~---P~gi~~-d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 200 --------------------------GRRKVLEGLQY---PFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp --------------------------EEEEEEECCCS---EEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred --------------------------ceEEEecCCCC---ceEEEE-e-CCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence 11111111112 245555 4 3444445455689999999999999888644
Q ss_pred C-ceeeEEEecCCCC
Q 012712 385 R-HVVNCIEPHPHST 398 (458)
Q Consensus 385 ~-~~v~~~~~s~~~~ 398 (458)
. .....+++.|++.
T Consensus 249 ~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 249 KQTRLYGITIALSQC 263 (267)
T ss_dssp SCCCCCCEEEECSCC
T ss_pred cccccceeeecCccC
Confidence 3 2477888888764
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.31 E-value=1.7e-09 Score=97.50 Aligned_cols=257 Identities=9% Similarity=-0.012 Sum_probs=148.5
Q ss_pred CCeEEEEEcC-CCcEEEeecccccceeeeeccccccceEEEEE-c-CCCCeEEEEe-----------------cCCCeEE
Q 012712 117 DDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKLAI-E-PGSPHVFYTC-----------------GEDGLVQ 176 (458)
Q Consensus 117 ~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~s~-----------------~~dg~i~ 176 (458)
||++++.... +..|.+.|+.+.+......+.. ......+++ . |++..+++++ -.++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 6777766554 5679999999887665433332 234678887 4 8885544442 3356899
Q ss_pred EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC---------------eEEEEecCCCccC--
Q 012712 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE---------------YTRLYDIRKYKWD-- 239 (458)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------------~i~i~d~~~~~~~-- 239 (458)
++|.++.+....+... .....++++|+ +.++++.+.+. .|.++|....+..
T Consensus 179 vID~~t~~v~~qI~Vg-----------g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS-----------GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEETTTTEEEEEEEES-----------SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEECCCCeEEEEEEeC-----------CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 9999988777666532 13456778998 56666666442 2444443221100
Q ss_pred -CCcc-CCC-----CCC-CcCC-CccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCC--CCCCCCCcccc
Q 012712 240 -GSTD-FGQ-----PAD-YFCP-PNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGP--NPPPSSPVSTR 306 (458)
Q Consensus 240 -~~~~-~~~-----~~~-~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~--~~~~~~~~~~~ 306 (458)
+... .+. ... .... ..... -.....++.++|||+++++++ .+.+.++|+.+.+.. ..+.
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~------- 318 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD------- 318 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC-------
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC-------
Confidence 0000 000 000 0000 00010 123567899999999888877 458999999852100 0000
Q ss_pred ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC----------Ce
Q 012712 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG----------GE 376 (458)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~ 376 (458)
...........-.. ...++| +|+|....+.-.|++|.+||+.+ .+
T Consensus 319 ---------------------~~~~v~~~v~vG~g---P~h~aF-~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 319 ---------------------PRSAVVAEPELGLG---PLHTAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp ---------------------GGGGEEECCBCCSC---EEEEEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred ---------------------cccceEEEcCCCCC---cceEEE-CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 00011112221122 577888 99995445667789999999987 56
Q ss_pred EEEEeecCCce-----eeEEEecCCCCeEEEeec---CCcE----------EEecCCcccc
Q 012712 377 LIRVIEADRHV-----VNCIEPHPHSTVLASSGI---ESDI----------KILTPNAADR 419 (458)
Q Consensus 377 ~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~---d~~i----------~iw~~~~~~~ 419 (458)
.+..+..|-.+ -..+.++|||++|+++.. |..+ .++|++++++
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 77777666443 234467899999998743 4332 7888866554
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=9.7e-10 Score=104.30 Aligned_cols=305 Identities=10% Similarity=0.036 Sum_probs=173.1
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCc----------ceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND----------NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
+..|+.++.++.|.-+|..+|+.+.++...... .-..+++ ++..|+.++.|+.|..+|..+++.+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456667777889999999999988776322110 0112333 44578888889999999999998876
Q ss_pred eeecc-ccc--cceEE-EEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeeecccCC---------------C
Q 012712 143 TKLLG-KHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDD---------------R 197 (458)
Q Consensus 143 ~~~~~-~~~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------~ 197 (458)
..... ... ..+.. ... .++ . ++.++. ++.|+.+|.++++.+..+....... .
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v-~~~-~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV-FKG-K-VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE-ETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eecCCcCcCcCcccccCcEE-ECC-E-EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 64332 100 11111 111 133 4 444443 6899999999999887665432210 0
Q ss_pred C--cc-----eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc-ceeEEEe
Q 012712 198 R--NY-----MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAF 269 (458)
Q Consensus 198 ~--~~-----~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 269 (458)
. +. ........++++|+ ..+++.+..++.. |....... ..+... .-.-+++
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~--w~~~~~~~------------------~~gd~~~~~sv~Al 288 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSP--WSHKVRSP------------------KGGDNLYLASIVAL 288 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEES--SCHHHHST------------------TCCCCTTTTEEEEE
T ss_pred cccCceeEeCCCcccccceeEcCC-CCEEEEECCCCcc--ccCCCCCc------------------cCCCCeeeEEEEEE
Confidence 0 00 01111235778887 4677777766543 43221100 000000 0001111
Q ss_pred CCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEE
Q 012712 270 SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (458)
Q Consensus 270 ~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (458)
++ +..-.+|........ .-.+.....+ .+. .
T Consensus 289 D~---------~TG~~~W~~~~~~~d-------------------------------------~wd~~~~~~p-~l~--~ 319 (677)
T 1kb0_A 289 DP---------DTGKYKWHYQETPGD-------------------------------------NWDYTSTQPM-ILA--D 319 (677)
T ss_dssp CT---------TTCCEEEEEESSTTC-------------------------------------CSCCCCCSCC-EEE--E
T ss_pred EC---------CCCCEEEEEecCCCc-------------------------------------ccccccCCCc-EEE--e
Confidence 11 111123332221000 0000000111 111 2
Q ss_pred EecCCC---cEEEEecCCCeEEEEEecCCeEEEEeecCC-----------cee------------------------eEE
Q 012712 350 FFGPKC---EYVVSGSDCGRIFIWKKKGGELIRVIEADR-----------HVV------------------------NCI 391 (458)
Q Consensus 350 ~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~v------------------------~~~ 391 (458)
. ..+| +.++.++.+|.++++|..+|+++..+.... .++ ..+
T Consensus 320 ~-~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~ 398 (677)
T 1kb0_A 320 I-KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (677)
T ss_dssp E-EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred c-ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence 2 3477 688999999999999999999987664221 111 156
Q ss_pred EecCCCCeEEEeec-------------------------------------------CCcEEEecCCccccccccccccc
Q 012712 392 EPHPHSTVLASSGI-------------------------------------------ESDIKILTPNAADRATLPTNIEQ 428 (458)
Q Consensus 392 ~~s~~~~~l~s~~~-------------------------------------------d~~i~iw~~~~~~~~~~~~~~~~ 428 (458)
+++|++.++++... .|.|..||+.+++.+-...+..+
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~ 478 (677)
T 1kb0_A 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP 478 (677)
T ss_dssp EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS
T ss_pred eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC
Confidence 88999888776543 27899999999887644444445
Q ss_pred EEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 429 VCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 429 v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
+....++.++.+++.++.|+.+++||.
T Consensus 479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 479 WNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 566678888888888999999999984
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=2.1e-09 Score=101.91 Aligned_cols=209 Identities=14% Similarity=0.095 Sum_probs=121.6
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-Cce-EEEEEecCCCEEEEecCCCeEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+..|+.++.++.|.-+|..+|+.+-+......... ...+. ..+ ..+++ .+..++.++.|+.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVK------------ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGG------------GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccc------------cccccccCCccceEE--ECCEEEEEcCCCEEEE
Confidence 55677788889999999999998755110000000 00000 000 11222 2457788888999999
Q ss_pred EECCCcceeeeeccCCC---cceeE-EEEccCCCCeEEEEEcC------CCcEEEeecccccceeeeecccc--------
Q 012712 88 WDWKTERVKLSFHSGHN---DNVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKH-------- 149 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~~---~~i~~-~~~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~-------- 149 (458)
+|.++|+.+.++..... ..+.+ .... ++. ++.+.. +|.|..+|..+++.+........
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~ 207 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRVV---KGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH 207 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEEE---TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEEE---CCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccc
Confidence 99999998877633211 11111 1111 444 444432 58899999999887765332110
Q ss_pred ---------------------ccceEEEEEcCCCCeEEEEecCCC-------------------eEEEEeCCCCCcccee
Q 012712 150 ---------------------QGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELF 189 (458)
Q Consensus 150 ---------------------~~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~ 189 (458)
......+++.|.. .+++.++.++ .|..+|.++++.+..+
T Consensus 208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~ 286 (668)
T 1kv9_A 208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY 286 (668)
T ss_dssp HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred cccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe
Confidence 0111246788877 4667776665 4999999999988777
Q ss_pred eecccCCCCcceeecceEEEEECCCCCc---EEEEecCCCeEEEEecCCCccC
Q 012712 190 TCRPIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
+....... ......++....+..+ +. .++.++.+|.++++|..+++.+
T Consensus 287 ~~~~~~~w-d~~~~~~~~~~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 287 QVTPGDSW-DFTATQQITLAELNID-GKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp ESSTTCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred ecCCCccc-cccCCCCcEEEEeccC-CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 64321100 0001112222222223 33 6889999999999999998754
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.25 E-value=4.6e-09 Score=91.41 Aligned_cols=251 Identities=12% Similarity=0.061 Sum_probs=145.0
Q ss_pred CCCCeEEE-eeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee------cC-CCceEEEEEecCCCEEEEe
Q 012712 8 NNNKRART-SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD------KH-RGCVNTVSFNTDGDILISG 79 (458)
Q Consensus 8 ~~~~~l~~-~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h-~~~v~~~~~s~~~~~l~s~ 79 (458)
.++++|+. |..++.|.|.|+.+.... .++.++++ .. ...-..+..+|+| +++++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-----------------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE-----------------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS-----------------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC-----------------ceeeeeechhhcccccCCCcccceeECCCe-EEEEc
Confidence 66766555 668889999999754211 12222331 01 1133457788999 66665
Q ss_pred cCC------CeEEEEECCCcceeeeeccC-CC-cceeEEEEccCCCCeEEEEEc-------------------CCCcEEE
Q 012712 80 SDD------RRVILWDWKTERVKLSFHSG-HN-DNVFQAKIMPFTDDRSIVTCA-------------------ADGQVRH 132 (458)
Q Consensus 80 ~~d------~~i~iwd~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~l~s~~-------------------~dg~i~v 132 (458)
..+ +.|.+.|.++++.+.++..+ .. .--+.+.|+| +++.+++.. ...+|.+
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 544 78999999999988887433 11 2245688899 999888884 3689999
Q ss_pred eecccccceeeeeccccccceEEEEE--cCCCCeEEEEec-----CCCeEEEEeCCCCCcc--ceeeeccc--CC-CC--
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCG-----EDGLVQHFDLRTGAAT--ELFTCRPI--DD-RR-- 198 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~--~~~~~~~~--~~-~~-- 198 (458)
||+.+++...+..+.........+.| +|+++..++++. .+++|.+|....++.. +.+..... .. ..
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 99988766555444322233445555 999966555565 6778888776544321 11111110 00 00
Q ss_pred --ccee-ecceEEEEECCCCCcEEEEecCCCeEEEEecCCC---ccCCCccCCCCCCCcCCCccc-cccccceeEEEeCC
Q 012712 199 --NYMT-VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY---KWDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSD 271 (458)
Q Consensus 199 --~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 271 (458)
+... ...+..+.++||+..+.++.-..+.|.+||+... ++......+..... +.... ..-.+....++++|
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~--~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR--ADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC--BCCTTSCCCCSCCCCEEECT
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc--ccccccccCCCCCCEEEEcC
Confidence 0000 1346789999995444444556789999998633 22221111100000 00000 00012367899999
Q ss_pred CCcEEEEec
Q 012712 272 QSELLVSYN 280 (458)
Q Consensus 272 ~~~~l~~~~ 280 (458)
||++|.++.
T Consensus 391 DGk~LyVaN 399 (462)
T 2ece_A 391 DGRRVYVTN 399 (462)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEEc
Confidence 999887765
No 242
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=3.6e-07 Score=89.07 Aligned_cols=327 Identities=9% Similarity=0.039 Sum_probs=190.5
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeecc------CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
..|.++...++|.+.+. +.+ -+.+||..+++....... .....|.++...+ ++.+. .|...+-|.+++.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lW-igt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK--DNKLW-IATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT--TSEEE-EEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC--CCCEE-EEeCCCCeEEECC
Confidence 56999999888876654 444 589999876654321100 1235688998887 77644 4555456788887
Q ss_pred ccccceeeee------------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 136 LERGGVETKL------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 136 ~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
.+........ ..-....|.++...+++ . |..|+.++-|..++........ +..............
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSN 362 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCC
Confidence 6554221110 01134578999999888 3 5667767778899877654322 211000000000023
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (458)
..|.++...++ + .|..|+.++-|..||..+.+..... .........|.++...++|.+.+....+.
T Consensus 363 ~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~d~~g~lWigt~~~G 428 (781)
T 3v9f_A 363 KVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAIYNK------------ENRELLSNSVLCSLKDSEGNLWFGTYLGN 428 (781)
T ss_dssp SCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTEE
T ss_pred cceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEEEcc------------CCCCCCCcceEEEEECCCCCEEEEeccCC
Confidence 35889988876 3 4566776667999998765422110 00011245789999988898777555568
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEec
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
+..++..++.. ..+.. ......|.++.. +++|++.+. +
T Consensus 429 l~~~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~i~~-d~~g~lwig-t 467 (781)
T 3v9f_A 429 ISYYNTRLKKF---------------------------------------QIIELEKNELLDVRVFYE-DKNKKIWIG-T 467 (781)
T ss_dssp EEEECSSSCEE---------------------------------------EECCSTTTCCCCEEEEEE-CTTSEEEEE-E
T ss_pred EEEEcCCCCcE---------------------------------------EEeccCCCCCCeEEEEEE-CCCCCEEEE-E
Confidence 99998765311 11110 001113778877 888875554 4
Q ss_pred CCCeEEEEEecCCeEEEEeecC-----CceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc----ccccEEEEE
Q 012712 363 DCGRIFIWKKKGGELIRVIEAD-----RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT----NIEQVCFSI 433 (458)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~v~~~~ 433 (458)
. +-|..||..+++........ ...|.++...++|.+.+. +.++-|..|+..+++...+.. ....|.++.
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 545 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIY 545 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEE
Confidence 4 56889998776544332222 356899999998886654 443457778887665443321 133588999
Q ss_pred EecCCcEEEeeecCCceEEEE
Q 012712 434 YSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 434 ~s~d~~~l~s~~~d~~i~~w~ 454 (458)
..++|.+.++ +.+|-|..|+
T Consensus 546 ~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 546 RSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp ECTTSCEEEE-ETTEEEEESC
T ss_pred ECCCCCEEEE-ECCCceEEEC
Confidence 9999864433 2344434443
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.24 E-value=3.2e-08 Score=82.79 Aligned_cols=251 Identities=10% Similarity=0.045 Sum_probs=147.8
Q ss_pred eEEEEEcCCCcEEEeeccccccee---eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712 119 RSIVTCAADGQVRHAQILERGGVE---TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 119 ~~l~s~~~dg~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
.+|+.+.. +.|+.+++....... ...+......+..+++++++..++++-..++.|..+++.......... .
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~--- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-Q--- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-T---
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-C---
Confidence 44555553 478888876543210 011222234578899999765777777778899999987654322221 0
Q ss_pred CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-
Q 012712 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE- 274 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 274 (458)
.......++++|+++.++++-...+.|.++++..... ..+..........++++|++.
T Consensus 77 ------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---------------~~~~~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 77 ------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---------------RVLFDTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp ------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEETTTTE
T ss_pred ------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---------------EEEEECCCCCccEEEEeeCCCE
Confidence 1124688999997566666666778999999864321 011111123568899999654
Q ss_pred EEEEecC---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEE
Q 012712 275 LLVSYND---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNF 350 (458)
Q Consensus 275 ~l~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 350 (458)
++++... +.|..++++... ...+. .... ....+++
T Consensus 136 lyv~~~~~~~~~I~~~~~dg~~---------------------------------------~~~~~~~~~~--~P~gia~ 174 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDGTN---------------------------------------RRILAQDNLG--LPNGLTF 174 (267)
T ss_dssp EEEEECCSSSCEEEEEETTSCC---------------------------------------CEEEECTTCS--CEEEEEE
T ss_pred EEEEECCCCCcEEEEEecCCCC---------------------------------------cEEEEECCCC--CCcEEEE
Confidence 4444432 367777765311 11111 1111 2567888
Q ss_pred ecCCCcEEEE-ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc-cccc-cc
Q 012712 351 FGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-LPTN-IE 427 (458)
Q Consensus 351 ~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~-~~ 427 (458)
+++++.|+. -...+.|.+++.........+.. ......++.. .+.++++....+.|..++..+++... +... ..
T Consensus 175 -d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~ 251 (267)
T 1npe_A 175 -DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT 251 (267)
T ss_dssp -ETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC
T ss_pred -cCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccc
Confidence 998766654 44568999999865443333332 2334566664 34444444456899999998876543 3222 22
Q ss_pred cEEEEEEecCCc
Q 012712 428 QVCFSIYSADYW 439 (458)
Q Consensus 428 ~v~~~~~s~d~~ 439 (458)
....+++.|++.
T Consensus 252 ~p~gi~~~~~~~ 263 (267)
T 1npe_A 252 RLYGITIALSQC 263 (267)
T ss_dssp CCCCEEEECSCC
T ss_pred ccceeeecCccC
Confidence 467788888864
No 244
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=5.5e-07 Score=87.74 Aligned_cols=322 Identities=8% Similarity=-0.000 Sum_probs=189.1
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec-------------cCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-------------SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
...|.++...++|.+.+ |+..+-|.++|..++....... .-....|.++...+ ++. |..|..+
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence 45799999988886544 5553458889987655322110 11345788998887 665 5566666
Q ss_pred CcEEEeecccccceeeee-------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712 128 GQVRHAQILERGGVETKL-------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (458)
+-|..++........... ..-....|.++...+++ . |..|+.++-|..+|..++..... ... ..
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~-~~~--~~---- 403 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINVFENGKRVAIYN-KEN--RE---- 403 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEEEETTEEEEECC------------
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEEEECCCCeEEEc-cCC--CC----
Confidence 778888876543221100 01123568999988887 4 55666666688898765432211 100 00
Q ss_pred eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
.....|.++...++ + .|..|+.++.+..+|..+++.... ... ......|.++...++|.+.+...
T Consensus 404 ~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~----------~~~---~~~~~~v~~i~~d~~g~lwigt~ 468 (781)
T 3v9f_A 404 LLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQII----------ELE---KNELLDVRVFYEDKNKKIWIGTH 468 (781)
T ss_dssp CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEEEC----------CST---TTCCCCEEEEEECTTSEEEEEET
T ss_pred CCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEEEe----------ccC---CCCCCeEEEEEECCCCCEEEEEC
Confidence 02346889988876 3 455577767799999876543211 000 11245788999999998776655
Q ss_pred CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEE
Q 012712 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV 359 (458)
Q Consensus 281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~ 359 (458)
+.+..|+..++..... .... .......|.++.. +++|++.+
T Consensus 469 -~Gl~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~i~~i~~-d~~g~lWi 510 (781)
T 3v9f_A 469 -AGVFVIDLASKKVIHH------------------------------------YDTSNSQLLENFVRSIAQ-DSEGRFWI 510 (781)
T ss_dssp -TEEEEEESSSSSCCEE------------------------------------ECTTTSSCSCSCEEEEEE-CTTCCEEE
T ss_pred -CceEEEeCCCCeEEec------------------------------------ccCcccccccceeEEEEE-cCCCCEEE
Confidence 7799999765321100 0000 0000123778887 88887665
Q ss_pred EecCCCeEEEEEecCCeEEEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc----cccEEE
Q 012712 360 SGSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN----IEQVCF 431 (458)
Q Consensus 360 ~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----~~~v~~ 431 (458)
. +.++-+..||..+++. ..+.. ....|.++...++|.+.++.. +|.+..|+..+++...+... ...|.+
T Consensus 511 g-t~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~ 587 (781)
T 3v9f_A 511 G-TFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRA 587 (781)
T ss_dssp E-ESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCE
T ss_pred E-EcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEE
Confidence 4 4433477788766543 33321 234688999989988766544 66658999887755433222 124778
Q ss_pred EEEecCCcEEEeeecCCceEEE
Q 012712 432 SIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 432 ~~~s~d~~~l~s~~~d~~i~~w 453 (458)
+...++|.+-++ +.+| |..|
T Consensus 588 i~~d~~g~lW~~-t~~G-l~~~ 607 (781)
T 3v9f_A 588 ISEDKNGNIWAS-TNTG-ISCY 607 (781)
T ss_dssp EEECSSSCEEEE-CSSC-EEEE
T ss_pred EEECCCCCEEEE-cCCc-eEEE
Confidence 888888865544 2444 4444
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.20 E-value=1.1e-08 Score=83.50 Aligned_cols=204 Identities=10% Similarity=0.052 Sum_probs=136.1
Q ss_pred CCCCCCCCeEEEeeC--CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEec
Q 012712 4 ASNNNNNKRARTSVD--KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGS 80 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~--d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~ 80 (458)
+.+++++.+.++.+. ++.|++.|+.+|+.+.+. .+..+. ....+++. ++.| ++.-
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i-------------------~l~~~~-fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH-------------------KMDDSY-FGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE-------------------ECCTTC-CEEEEEEE--TTEEEEEET
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE-------------------ecCCCc-ceEEEEEe--CCEEEEEEe
Confidence 346777644444432 689999999999987541 112221 12245554 4444 4445
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEE
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLA 157 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~ 157 (458)
.++.+.++|..+.+.+.++..+ ... ....++ |++.++.+..++.|.++|..+.+............ .++.+.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS--CCEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC--eEEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 6789999999999988887443 122 233556 88877777778999999998877665543432222 356788
Q ss_pred EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC---CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (458)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (458)
|. ++ .+++....++.|.+.|..+++....+....... ..........+.++|+|++..+++++...+.+...++.
T Consensus 159 ~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 159 YI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 87 66 666666678899999999999888876532100 00000112468999999877788888888999999987
Q ss_pred CC
Q 012712 235 KY 236 (458)
Q Consensus 235 ~~ 236 (458)
..
T Consensus 237 ~~ 238 (266)
T 2iwa_A 237 LV 238 (266)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.18 E-value=7.3e-10 Score=99.89 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=136.2
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE-C-CCCCcEEEEec---------------
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI-D-PRNANLFAVAG--------------- 223 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-p~~~~~l~~~~--------------- 223 (458)
||+.++++...+..|.+.|+.+.++.+.+..+. ...+..+++ + |+ +.++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~---------g~~phg~~~~~~p~-~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---------AKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---------CCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSSTTC
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC---------CCCCcceeeeecCC-CcEEEEecccccccCCCCccccc
Confidence 776666666677889999999999877664321 224667787 4 87 56666663
Q ss_pred ---CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc----------------E
Q 012712 224 ---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF----------------I 284 (458)
Q Consensus 224 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~----------------i 284 (458)
.++.+.+.|..+.+...+... .+....++++|+|+++.+.+.++ +
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~V----------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLV----------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEE----------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred ccccCceEEEEECCCCeEEEEEEe----------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 345788999987664322111 11345678999999888776432 2
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
.++|... +. .+ .++|++...
T Consensus 234 ~V~~~~~-----------------------------------------------------~~--~~-v~~Gk~~~i---- 253 (595)
T 1fwx_A 234 VVFNIAE-----------------------------------------------------IE--KA-IAAGDYQEL---- 253 (595)
T ss_dssp EEEEHHH-----------------------------------------------------HH--HH-HHHTCSEEE----
T ss_pred EEeeccc-----------------------------------------------------ee--Ee-ccCCCeeEE----
Confidence 2222111 00 11 455655443
Q ss_pred CeEEEEEecC--CeE-EEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCCccc------------cccccccccc
Q 012712 365 GRIFIWKKKG--GEL-IRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPNAAD------------RATLPTNIEQ 428 (458)
Q Consensus 365 g~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~------------~~~~~~~~~~ 428 (458)
+.|.+.|..+ ++. ++.+... ....++.++|||+++++++ .+.+|.++|+.+.+ ......-...
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g 332 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 332 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence 4499999988 555 5566432 3467899999999776554 58899999999653 1122233345
Q ss_pred EEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 429 VCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 429 v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
...++|+|||....+.-.|++|.+|++
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEh
Confidence 889999999944456778899999985
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.15 E-value=8e-09 Score=95.89 Aligned_cols=367 Identities=10% Similarity=-0.009 Sum_probs=189.1
Q ss_pred CCeEEEeeC-CCcEEEEEc-cccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712 10 NKRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 10 ~~~l~~~~~-d~~i~iw~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+.+|+.++. ++.|.-+|. .+|+.+-+......... ......+ ..-..+++ ++..++.++.|+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~---------~~~~~~~-~~~~~~~~--~~~~v~v~~~dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST---------KAVMCCD-VVDRGLAY--GAGQIVKKQANGHLLA 129 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG---------GGGCTTC-SCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc---------ccccccc-ccccccEE--ECCEEEEEeCCCEEEE
Confidence 445667777 788999999 88987754110000000 0000000 00011222 2557778888999999
Q ss_pred EECCCcceeeeeccCC-C--cceeE-EEEccCCCCeEEEEEcC------CCcEEEeecccccceeeeecccccc------
Q 012712 88 WDWKTERVKLSFHSGH-N--DNVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQG------ 151 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~-~--~~i~~-~~~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~~~------ 151 (458)
+|..+|+.+.+..... . ..+.+ .... ++. ++.++. ++.|..+|..+++.+..........
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p 205 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVA---KDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAK 205 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEEE---CCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCc
Confidence 9999999877653211 1 01211 1111 444 444443 7899999999988765533221110
Q ss_pred ------------------------------ceEEEEEcCCCCeEEEEecCC----------------CeEEEEeCCCCCc
Q 012712 152 ------------------------------RAHKLAIEPGSPHVFYTCGED----------------GLVQHFDLRTGAA 185 (458)
Q Consensus 152 ------------------------------~v~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~ 185 (458)
.-..+++.+... +++.+..+ +.|..+|.++++.
T Consensus 206 ~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~ 284 (571)
T 2ad6_A 206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA 284 (571)
T ss_dssp TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred ccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence 001356666653 44444421 3699999999998
Q ss_pred cceeeecccCCCCcceeecceEEEEECCCCC---cEEEEecCCCeEEEEecCCCccCCCccCCCCCC--------CcCCC
Q 012712 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD--------YFCPP 254 (458)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~~~~~ 254 (458)
+..++..............++ -+...++ + ..++.++.+|.++++|..+++......+..... .-.+.
T Consensus 285 ~W~~~~~~~d~~d~~~~~~p~-l~~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~ 362 (571)
T 2ad6_A 285 KWGYQKTPHDEWDFAGVNQMV-LTDQPVN-GKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPV 362 (571)
T ss_dssp EEEEESSTTCSSCCCCCCCCE-EEEEEET-TEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEE
T ss_pred EEEecCCCCcccccccCCCCE-EEecccC-CcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCcee
Confidence 776654321100000011112 1222234 4 367788899999999999987654433322100 00000
Q ss_pred c--------------ccccc--ccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712 255 N--------------LIGDE--QVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (458)
Q Consensus 255 ~--------------~~~~~--~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (458)
. ..... ...-..++++|+..++.....+ ...++..... +
T Consensus 363 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~-----~------------------- 418 (571)
T 2ad6_A 363 RDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP-----Y------------------- 418 (571)
T ss_dssp ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-----C-------------------
T ss_pred cccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc-----c-------------------
Confidence 0 00000 0001356788887777766654 3333332210 0
Q ss_pred cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (458)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 397 (458)
..-..+.+. -..+.. +|.+. ....+|.|..||+.+++.+-++... ..+....+...+
T Consensus 419 -------------~~g~~~~g~-----~~~~~~-~~~~~---~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~g 475 (571)
T 2ad6_A 419 -------------RAGQFFVGA-----TLAMYP-GPNGP---TKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKG 475 (571)
T ss_dssp -------------CTTSCCCCE-----EEEEEE-CTTST---TSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETT
T ss_pred -------------ccCCccccc-----cceecc-Ccccc---CCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECC
Confidence 000000000 111222 44322 0134688999999999988776533 223333333346
Q ss_pred CeEEEeecCCcEEEecCCccccccccccccc--EEEEEEecCCcEEE
Q 012712 398 TVLASSGIESDIKILTPNAADRATLPTNIEQ--VCFSIYSADYWWSK 442 (458)
Q Consensus 398 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~ 442 (458)
..++.++.|+.|+.+|..+++.+-....... -..+.+..+|+.++
T Consensus 476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 6777789999999999999977632221122 12244668885443
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.13 E-value=1.2e-07 Score=87.95 Aligned_cols=213 Identities=10% Similarity=0.041 Sum_probs=118.8
Q ss_pred CCeEEEeeC-CCcEEEEEc-cccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCE----EEEecCCC
Q 012712 10 NKRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI----LISGSDDR 83 (458)
Q Consensus 10 ~~~l~~~~~-d~~i~iw~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~~d~ 83 (458)
+.+|++++. ++.|.-+|. .+|+.+-+........... ..........++++|.+.. |+.++.|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~----------~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg 131 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA----------VACCDLVNRGLAYWPGDGKTPALILKTQLDG 131 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG----------GCSSCSCCCCCEEECCCSSSCCEEEEECTTS
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccc----------cccccccccceEEEecCCcceeEEEEEcCCC
Confidence 456777777 888999999 8898875411100000000 0000000122455444444 77888899
Q ss_pred eEEEEECCCcceeeeeccCC-C--cceeE-EEEccCCCCeEEEEEc------CCCcEEEeecccccceeeeecccccc--
Q 012712 84 RVILWDWKTERVKLSFHSGH-N--DNVFQ-AKIMPFTDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQG-- 151 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~-~--~~i~~-~~~~~~~~~~~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~~~~-- 151 (458)
.|.-+|.++|+.+.+..... . ..+.+ .... ++. ++.++ .+|.|..+|..+++.+..........
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~---~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~ 207 (599)
T 1w6s_A 132 NVAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL 207 (599)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEEEEECCCCCEEEeecCCCCCccceeecCCEEE---CCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence 99999999999877653211 0 01221 1111 454 44443 37899999999988765533221110
Q ss_pred ---------------------------------ce-EEEEEcCCCCeEEEEecCC----------------CeEEEEeCC
Q 012712 152 ---------------------------------RA-HKLAIEPGSPHVFYTCGED----------------GLVQHFDLR 181 (458)
Q Consensus 152 ---------------------------------~v-~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~ 181 (458)
.+ ..+++.+.. .+++.+..+ +.|..+|.+
T Consensus 208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~ 286 (599)
T 1w6s_A 208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD 286 (599)
T ss_dssp TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence 00 134556666 355555543 479999999
Q ss_pred CCCccceeeecccCCCCcceeecceEEEEEC-CCCC---cEEEEecCCCeEEEEecCCCccC
Q 012712 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA---NLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~---~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
+++....++..............++ -+... .+ + ..++.++.+|.++++|.++++.+
T Consensus 287 TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKD-GKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTT-SCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCceeeEeecCCCccccccCCCccE-EEeccccC-CcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 9998877664321110000011111 12222 33 4 56777899999999999988754
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.10 E-value=7.7e-08 Score=77.53 Aligned_cols=213 Identities=11% Similarity=0.042 Sum_probs=134.9
Q ss_pred eEEeeeeeEeecCCC--ceEEEEEecCCCEEEEecCCC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCC-eEEE
Q 012712 48 VLRLGIYAKLDKHRG--CVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIV 122 (458)
Q Consensus 48 ~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~ 122 (458)
...+++++++. |.. ....+.|+ ++.++.+.+.+| .|+++|+++++.+.++.. ..........+ ++ ...+
T Consensus 28 ~~~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~--~g~~ly~ 101 (262)
T 3nol_A 28 IYDYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISD--WKDKIVG 101 (262)
T ss_dssp EEEEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEE--ETTEEEE
T ss_pred ccceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEE--eCCEEEE
Confidence 34567777774 553 35889998 677777777665 899999999998887732 23343333333 33 4444
Q ss_pred EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (458)
Q Consensus 123 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (458)
..-.++.+.++|..+.+.+........ ...+.+++..+ +.+..++.|.++|.++.+....+....... .
T Consensus 102 ltw~~~~v~v~D~~t~~~~~ti~~~~e-----G~glt~dg~~L-~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~-----~ 170 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQVRSFNYDGE-----GWGLTHNDQYL-IMSDGTPVLRFLDPESLTPVRTITVTAHGE-----E 170 (262)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSSC-----CCCEEECSSCE-EECCSSSEEEEECTTTCSEEEEEECEETTE-----E
T ss_pred EEeeCCEEEEEECccCcEEEEEECCCC-----ceEEecCCCEE-EEECCCCeEEEEcCCCCeEEEEEEeccCCc-----c
Confidence 445688999999999888776444331 12333566444 444447889999999998877766432100 1
Q ss_pred ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
...++.+.|. + +.+.+..-.+..|.+.|.++++......+........ .......-.+.|||+|+++.|...+..
T Consensus 171 ~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~---~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 171 LPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG---PLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC---SCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc---cccCcCCceEEEEEcCCCCEEEEECCC
Confidence 1234557776 3 5666666678899999999998776655432110000 001123456899999987766665544
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.09 E-value=8.7e-09 Score=83.02 Aligned_cols=187 Identities=14% Similarity=0.097 Sum_probs=121.2
Q ss_pred CCCCCCeEEEeeCCC--cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe-cCC
Q 012712 6 NNNNNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG-SDD 82 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~--~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d 82 (458)
|+ ++.+..+.+.+| .|+++|+++|+.+.+ +.- ..........++++.|... -.+
T Consensus 50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~---------------------~~l-~~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 50 YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ---------------------IEL-GKRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EE-TTEEEEEEEETTEEEEEEECTTTCCEEEE---------------------EEC-CTTCCEEEEEEETTEEEEEESSS
T ss_pred EE-CCEEEEECCCCCCceEEEEECCCCcEEEE---------------------Eec-CCccceeEEEEeCCEEEEEEeeC
Confidence 44 456666666665 899999999998754 111 1222222223335455444 457
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc---cceEEEEEc
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~v~~~~~~ 159 (458)
+.+.+||.++.+.+.++..+. .=..++ + ++..|+.+..++.|.++|..+.+........... ..++.+.|.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~--eG~glt--~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDG--EGWGLT--H--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSS--CCCCEE--E--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred CEEEEEECccCcEEEEEECCC--CceEEe--c--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 899999999999988884332 223344 5 7777777777788999999988776654443322 334557776
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC--cceeecceEEEEECCCCCcEEEEec
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
+| .+++..-.+..|.+.|.++++....+......... .+....-.+.++++|+...++++|-
T Consensus 181 -~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 -DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 56 66666667889999999999998888764332111 1112235689999998555555543
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=2e-07 Score=76.17 Aligned_cols=223 Identities=6% Similarity=-0.016 Sum_probs=139.7
Q ss_pred EeeeeeEeecCCC--ceEEEEEecCCCEEEEecC--CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 50 RLGIYAKLDKHRG--CVNTVSFNTDGDILISGSD--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 50 ~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
..+.++++. |.. ....+.|++++.+.++.+. ++.|.+.|+.+++.+..+..+.......+++. ++...++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEe
Confidence 445666674 553 3689999998765555543 57999999999998887632222222345554 334555555
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
.++.+.++|..+.+.+...... ... ...+++++..++++- .++.|.++|.++.+....+....... ....
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g--~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~-----p~~~ 153 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ--MKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGH-----RVIR 153 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC--SSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTE-----ECCC
T ss_pred cCCEEEEEECCCCcEEEEEECC--CCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCc-----cccc
Confidence 6899999999888776653332 111 233556775555554 67899999999988777765432100 1113
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC--ccccccccceeEEEeCCCCcEEE-Eec-C
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP--NLIGDEQVGITGLAFSDQSELLV-SYN-D 281 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~-~~~-~ 281 (458)
++.+.|. + +..++....++.|.+.|..+++......++... +. ............++|+|+++.+. ++. .
T Consensus 154 ~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~----~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 154 LNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLR----KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHH----HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred ceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcc----cccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 5677787 4 566666667889999999998865543321000 00 00000123568999999986554 444 4
Q ss_pred CcEEEEEccCC
Q 012712 282 EFIYLFTQDMG 292 (458)
Q Consensus 282 ~~i~i~~~~~~ 292 (458)
+.++..++...
T Consensus 228 ~~v~~i~l~~~ 238 (266)
T 2iwa_A 228 PKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEEEEEC
T ss_pred CeEEEEEEecc
Confidence 57888887653
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.07 E-value=2.4e-07 Score=79.89 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=61.6
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC-------------------CCcceeEEEEccCCCCeEEE
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG-------------------HNDNVFQAKIMPFTDDRSIV 122 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~~~~l~ 122 (458)
....+++++++|+++.++..++.|..|+..+++.. .+... ....+..+++.+ +...|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--CCCcEE
Confidence 34567889999987888888899999998765432 22100 013478899985 444455
Q ss_pred EEcCCCcEEEeecccccceeee-eccc-cccceEEEEEcC-CCCeEEEEe
Q 012712 123 TCAADGQVRHAQILERGGVETK-LLGK-HQGRAHKLAIEP-GSPHVFYTC 169 (458)
Q Consensus 123 s~~~dg~i~vw~~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~~l~s~ 169 (458)
.+...+.|..++..++...... ...+ .......+++.+ ++ ++.++.
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d 144 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTD 144 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEE
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEEC
Confidence 5544455888886644321110 0111 113467788888 77 555543
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.05 E-value=1.3e-08 Score=81.96 Aligned_cols=184 Identities=9% Similarity=0.005 Sum_probs=121.6
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+.+..+.+.+|.|+++|+++|+.+.+. +... -.--.+++.. +++.+..-.++.+.+||
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~--------------------l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME--------------------RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE--------------------ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE--------------------CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEE
Confidence 556677778889999999999988551 2211 1112244432 23344445678999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEEEcCCCCeEE
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPHVF 166 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l 166 (458)
.++.+.+.++... ..-..++ + +++.|+.+..++.|.++|..+.+.........+.. .++.+.|. +| .++
T Consensus 123 ~~Tl~~~~ti~~~--~eGwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~ly 194 (268)
T 3nok_A 123 GMPPQRERTTRYS--GEGWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIY 194 (268)
T ss_dssp TTTTEEEEEEECS--SCCCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred CCcCcEEEEEeCC--CceeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEE
Confidence 9999998888432 2224455 4 67777777778999999999888766544443333 34567776 56 666
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCC---cceeecceEEEEECCCCCcEEEEec
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRR---NYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
+..-.+..|.+.|.++++....+......... ......-.+.++++|++..++++|-
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 66667889999999999988887754221000 0112234689999998666666653
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.05 E-value=9.1e-08 Score=88.91 Aligned_cols=218 Identities=9% Similarity=-0.017 Sum_probs=115.5
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+..|+.++.++.|.-+|..+|+.+-+......... .......-..+++ .+..++.++.|+.|.-+|
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~------------~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD 133 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDI------------RPCCDVVNRGAAI--YGDKVFFGTLDASVVALN 133 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTC------------CCSSCSCCCCCEE--ETTEEEEEETTTEEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccc------------ccccccCCCccEE--ECCEEEEEeCCCEEEEEE
Confidence 34466666544588899999988754110000000 0000000011222 245677788899999999
Q ss_pred CCCcceeeeeccCC-C--ccee-EEEEcc-CCCCe-EEEEEc------CCCcEEEeecccccceeeeeccc-cc------
Q 012712 90 WKTERVKLSFHSGH-N--DNVF-QAKIMP-FTDDR-SIVTCA------ADGQVRHAQILERGGVETKLLGK-HQ------ 150 (458)
Q Consensus 90 ~~~~~~~~~~~~~~-~--~~i~-~~~~~~-~~~~~-~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~-~~------ 150 (458)
.++|+.+.+..... . ..+. ...... ..+++ .+++++ .+|.|.-+|..+++.+....... +.
T Consensus 134 ~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~ 213 (582)
T 1flg_A 134 KNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGK 213 (582)
T ss_dssp SSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTE
T ss_pred CCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCc
Confidence 99999877653221 1 0111 111111 00122 555554 37889999998888765432210 00
Q ss_pred --------------------------------cceEEEEEcCCCCeEEEEecC--------------------C----Ce
Q 012712 151 --------------------------------GRAHKLAIEPGSPHVFYTCGE--------------------D----GL 174 (458)
Q Consensus 151 --------------------------------~~v~~~~~~~~~~~~l~s~~~--------------------d----g~ 174 (458)
..-..+++.|... +++.+.. | +.
T Consensus 214 ~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~ 292 (582)
T 1flg_A 214 DSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSG 292 (582)
T ss_dssp EEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSE
T ss_pred ccccccccccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCcccccCCCcccccCCcccce
Confidence 0001345666663 4554432 2 68
Q ss_pred EEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-CCCC--cEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
|..+|.++++.+..++..............++ -+... .++. ..++.++.+|.++++|.++++.+....
T Consensus 293 v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 293 QVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 99999999998877654321100000001112 12222 3322 478889999999999999988654433
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=1.4e-07 Score=89.49 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=70.2
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCcc---------e-eEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDN---------V-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------i-~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
+..|+.++.++.|.-+|..+|+.+.++....... + ..+++ .+..++.++.|+.|..+|..+++.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 4566677778899999999999887763211100 0 12233 34567788889999999999998876
Q ss_pred eeeccccc--cceEE-EEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeee
Q 012712 143 TKLLGKHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 143 ~~~~~~~~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 191 (458)
........ ..+.+ ..+ .++ . ++.+.. +|.|..+|.++++.+..+..
T Consensus 142 ~~~~~~~~~~~~~~~~P~v-~~~-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRV-VKG-K-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEECSCTTSSCBCCSCCEE-ETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eeccCCCCCcceecCCCEE-ECC-E-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 64332111 11110 011 133 4 444432 58999999999998877653
No 256
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.98 E-value=6.1e-07 Score=72.93 Aligned_cols=221 Identities=7% Similarity=0.116 Sum_probs=136.3
Q ss_pred eEeecCCCceEEEEEecCCCEEE-EecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILI-SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
+.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+..+-....-.+++.+ ++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence 45667667899999999876555 46678889999987 7776666333335678889988 88877776667888888
Q ss_pred ecccccce---eeeec----cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---CCccceeeecccCCCCcceee
Q 012712 134 QILERGGV---ETKLL----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 134 ~~~~~~~~---~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 203 (458)
++.....+ ....+ .........++|+|.+..+ +++.......+|.+.. ............ ......
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L-~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~---~~~~~~ 172 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF-WFFKEKNPIEVYKVNGLLSSNELHISKDKAL---QRQFTL 172 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE-EEEEESSSEEEEEEESTTCSSCCEEEECHHH---HHTCCS
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE-EEEECcCCceEEEEcccccCCceeeecchhh---cccccc
Confidence 87665431 11111 1234557899999998544 4454444444554431 111111111000 000012
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (458)
..+.+++++|..+++++....+..+..+|.... ....+.+... ..-..........|+|.++|++.+++-.+-
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g------~~~l~~~~~qpEGia~d~~G~lyIvsE~n~ 245 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKG------SRGLSHNIKQAEGVAMDASGNIYIVSEPNR 245 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTT------GGGCSSCCCSEEEEEECTTCCEEEEETTTE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCc------cCCcccccCCCCeeEECCCCCEEEEcCCce
Confidence 247899999987788888888899999997644 3222221110 000011123678999999999777755556
Q ss_pred EEEEEc
Q 012712 284 IYLFTQ 289 (458)
Q Consensus 284 i~i~~~ 289 (458)
++.|..
T Consensus 246 ~y~f~~ 251 (255)
T 3qqz_A 246 FYRFTP 251 (255)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 777654
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.98 E-value=5.5e-06 Score=70.64 Aligned_cols=124 Identities=8% Similarity=0.009 Sum_probs=76.5
Q ss_pred eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--c
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--Q 129 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~ 129 (458)
+.+..+... .....++|+++|+++++-..++.|..||.+.. ....+ ........+++.+ +++++++..... .
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~--dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTS--NGDLVATGWNADSIP 96 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECT--TSCEEEEEECTTSCE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcC--CCcEEEEeccCCcce
Confidence 444555433 45778999999998777777899999997653 32322 2235688999999 988666554332 3
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (458)
|..++..+++........ .......++..+++ ..+++-..++.|..+|...+
T Consensus 97 v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEEECTTSCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred EEEEcCCCCeEEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCC
Confidence 656666565533221121 12223445555554 55555556788888887654
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.98 E-value=2.6e-07 Score=79.65 Aligned_cols=247 Identities=10% Similarity=0.009 Sum_probs=139.7
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC----Cc------ceeecceEEEEECCCCCcEEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR----RN------YMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~------~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
...++++++++ .+++++..++.|..||..+++.. .+........ .+ ......+..+++.+++++ |++
T Consensus 20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp CCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 45678899987 66777888899999998765432 2221100000 00 001124688999973244 444
Q ss_pred ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecC------------------C
Q 012712 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND------------------E 282 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~------------------~ 282 (458)
+...+.|..+|..+++..... .............+++.+ +|.+.++... +
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~-----------~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLA-----------TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTEEEEECTTCEECEEEE-----------SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EECCCCEEEEeCCCCEEEEec-----------ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 544455888887654321000 000001123467899999 8987776432 3
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG- 361 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~- 361 (458)
.+..||..++. ...+.... .....+++ +|+|++|+.+
T Consensus 166 ~v~~~d~~~~~---------------------------------------~~~~~~~~--~~p~gia~-~~dg~~lyv~d 203 (322)
T 2fp8_A 166 RLIKYDPSTKE---------------------------------------TTLLLKEL--HVPGGAEV-SADSSFVLVAE 203 (322)
T ss_dssp EEEEEETTTTE---------------------------------------EEEEEEEE--SCCCEEEE-CTTSSEEEEEE
T ss_pred eEEEEeCCCCE---------------------------------------EEEeccCC--ccCcceEE-CCCCCEEEEEe
Confidence 46666654321 01111000 12456787 9999866655
Q ss_pred cCCCeEEEEEecCCe--EEEEeecCCceeeEEEecCCCCeEEEeec----------CCcEEEecCCcccccccccc----
Q 012712 362 SDCGRIFIWKKKGGE--LIRVIEADRHVVNCIEPHPHSTVLASSGI----------ESDIKILTPNAADRATLPTN---- 425 (458)
Q Consensus 362 ~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------d~~i~iw~~~~~~~~~~~~~---- 425 (458)
..++.|++|++.... ....+....+ ...+++.++|++.++... .+.|..++........+...
T Consensus 204 ~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 204 FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA 282 (322)
T ss_dssp GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT
T ss_pred CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc
Confidence 556899999986421 1122211223 788999999987776544 46788888764322222221
Q ss_pred cccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 426 IEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 426 ~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
...++.+++ .++.+.++....+.|..++.-
T Consensus 283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 283 GEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 234666666 467766676677888888753
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.95 E-value=1.1e-07 Score=75.97 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=118.6
Q ss_pred CCeEEEeeCC--CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEE
Q 012712 10 NKRARTSVDK--ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVI 86 (458)
Q Consensus 10 ~~~l~~~~~d--~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~ 86 (458)
+.+..+.+.+ +.|+.+|+++|+.+.+ ..+..+.- --.+++. ++.| ...-.++.+.
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~-------------------~~l~~~~f-geGi~~~--~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQR-------------------AEVPPPYF-GAGIVAW--RDRLIQLTWRNHEGF 88 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEE-------------------EECCTTCC-EEEEEEE--TTEEEEEESSSSEEE
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEE-------------------EeCCCCcc-eeEEEEe--CCEEEEEEeeCCEEE
Confidence 4455555554 4899999999998754 11222111 1123333 4444 4445678999
Q ss_pred EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEEEcCCCC
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSP 163 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 163 (458)
+||.++.+.+.++..+. .=..++ + ++..|+.+..++.|.++|..+.+.........+.. .++.+.+. ++
T Consensus 89 v~D~~tl~~~~ti~~~~--~Gwglt--~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G- 160 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPG--EGWALT--S--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG- 160 (243)
T ss_dssp EEETTTTEEEEEEECSS--CCCEEE--E--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-
T ss_pred EEECCcCcEEEEEeCCC--CceEEe--e--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-
Confidence 99999999988884332 224554 4 77777777778999999999887766544443332 34556665 55
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc---ceeecceEEEEECCCCCcEEEEec
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN---YMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
.+++..-.+..|.+.|.++++....+.......... .....-.+.++++|++..++++|-
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 666666567899999999999988887654322111 112235689999998655666554
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=5.8e-07 Score=83.49 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=70.3
Q ss_pred CCEEEEecC-CCeEEEEEC-CCcceeeeeccCCCcce----------eEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHNDNV----------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 73 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~~i----------~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
+..++.++. ++.|.-+|. .+|+.+.++.......+ ..++. ++..++.++.|+.+..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence 445666666 788999999 89998777632211111 11233 345677788899999999999988
Q ss_pred eeeeecccccc--ceEE-EEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeee
Q 012712 141 VETKLLGKHQG--RAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 141 ~~~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 191 (458)
+.......+.. .+.+ .... ++ . ++.++. ++.|..+|.++++.+..+..
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~-~g-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVA-KD-T-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE-TT-E-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEecCCCCCccceeccCCEEE-CC-E-EEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 76644443221 1111 1111 33 4 444443 78999999999998776653
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=4.9e-07 Score=72.88 Aligned_cols=208 Identities=10% Similarity=-0.009 Sum_probs=129.9
Q ss_pred eeeeEeecCC--CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 52 GIYAKLDKHR--GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 52 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
++++++. |. .....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .....---.+++. .+.+.+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~---g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD---GERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC---SSCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe---CCEEEEEEccCCE
Confidence 5666663 54 345789998 4667778888899999999999987776 2222111235543 2344444556899
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
+.++|..+.+.+.+...... -..++ +++..+ +.+..++.|.++|.++.+....+....... ....++.+
T Consensus 118 v~V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~~L-~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-----~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGE---GWGLC--YWNGKL-VRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-----PVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEECSSC---CCCEE--EETTEE-EEECSSSEEEEECTTTCCEEEEEECEETTE-----ECCCEEEE
T ss_pred EEEEECCcCcEEEEEeCCCc---eeEEe--cCCCEE-EEECCCCEEEEEcCCCCeEEEEEEeCCCCc-----cccccccc
Confidence 99999999888776444322 23333 556444 444558899999999998877776432110 11235667
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
.|. + +.+++....+..|.+.|.++++......+....... . ........-.+.||++|+++.|...+
T Consensus 187 e~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-~-~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-A-GQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-T-TTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-c-ccccCcCCceEEEEEcCCCCEEEEeC
Confidence 776 3 566666667889999999999876655442100000 0 00111234578999999865444444
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.94 E-value=2.2e-07 Score=88.40 Aligned_cols=289 Identities=9% Similarity=-0.019 Sum_probs=148.3
Q ss_pred EEEEccCCCCeEEEEEcCCC-----------cEEEeecccccceeeeecc-ccccceEEEEEcCCCCeEEEEecC-CCeE
Q 012712 109 QAKIMPFTDDRSIVTCAADG-----------QVRHAQILERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGE-DGLV 175 (458)
Q Consensus 109 ~~~~~~~~~~~~l~s~~~dg-----------~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-dg~i 175 (458)
++++.|. +++.++.|+.+. .+.+||..+++......+. .+.....++++.+++ .+++.|+. +..+
T Consensus 190 ~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCE
T ss_pred eEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCce
Confidence 4455541 677888876542 5788999887654322221 122334457778888 68888874 5689
Q ss_pred EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CC-----CeEEEEecCCCccCCCccCC-CCC
Q 012712 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SD-----EYTRLYDIRKYKWDGSTDFG-QPA 248 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~-~~~ 248 (458)
.+||..+.+-...-... . .. .-.+++..++ +++++.|+ .+ ..+.+||..+.+........ .+.
T Consensus 268 ~~yd~~t~~W~~~~~~~---~-----~R-~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~ 337 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQ---V-----AR-GYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM 337 (656)
T ss_dssp EEEEGGGTEEEECCCCS---S-----CC-SSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred EEecCcCCceeECCCCC---c-----cc-cccceEEecC-CeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence 99998876533221111 0 00 1134455565 57888888 34 46999999877643210000 000
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
...... ........+..+.. .+|+.+..+....+..||..+......
T Consensus 338 ~~~~~~-~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~------------------------------- 384 (656)
T 1k3i_A 338 LTADKQ-GLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKS------------------------------- 384 (656)
T ss_dssp CCCCTT-GGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEE-------------------------------
T ss_pred cccccc-ceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeec-------------------------------
Confidence 000000 00000111111111 122222222234577788765311000
Q ss_pred cccCceee----cCccceeeeeEEEEecCCCcEEEEecCCC-----------eEEEEEecCCeEEEEe--ecCCce-eeE
Q 012712 329 VRIAPQVY----KGHRNCVTVKGVNFFGPKCEYVVSGSDCG-----------RIFIWKKKGGELIRVI--EADRHV-VNC 390 (458)
Q Consensus 329 ~~~~~~~~----~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~-v~~ 390 (458)
.. .... ..... .-.++.+-..++++++.|+.++ .+.+||..+.+-.... ..+... -.+
T Consensus 385 -~~-~~~~~~~~~~~~~--~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~ 460 (656)
T 1k3i_A 385 -AG-KRQSNRGVAPDAM--CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 460 (656)
T ss_dssp -EE-ECEETTEECCCCB--TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred -CC-ccccccccCCCCC--CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence 00 0000 00000 1233333124788888888543 6788887766544332 112222 234
Q ss_pred EEecCCCCeEEEeecC-----------CcEEEecCCccccccccc---ccccEEEEEEecCCcEEEeeec
Q 012712 391 IEPHPHSTVLASSGIE-----------SDIKILTPNAADRATLPT---NIEQVCFSIYSADYWWSKSQNF 446 (458)
Q Consensus 391 ~~~s~~~~~l~s~~~d-----------~~i~iw~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~s~~~ 446 (458)
++..|++++++.|+.+ ..+.+||+.+.+...+.. .........+.|||+.++.|+.
T Consensus 461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5667899999999865 468999998765433221 1111334557799999999885
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.92 E-value=1.6e-06 Score=80.67 Aligned_cols=357 Identities=10% Similarity=0.017 Sum_probs=174.4
Q ss_pred CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcce--------eEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNV--------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (458)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i--------~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 143 (458)
++. ++.++.++.|.-+|..+|+.+.++........ ..+++ .+..++.++.++.|.-+|..+++.+..
T Consensus 68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEee
Confidence 444 44445434499999999998777632211100 12223 344677777899999999999988766
Q ss_pred eecccccc--ceE---EEEEc-CCCCeEEEEec------CCCeEEEEeCCCCCccceeeecccC---------------C
Q 012712 144 KLLGKHQG--RAH---KLAIE-PGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPID---------------D 196 (458)
Q Consensus 144 ~~~~~~~~--~v~---~~~~~-~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------~ 196 (458)
.....+.. .+. .+.=. .++...+++++ .++.|..+|.++++.+......... .
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 44433211 111 11111 12322566654 3789999999999877654321100 0
Q ss_pred C---Cc-------------ceeecceEEEEECCCCCcEEEEecC--------------------C----CeEEEEecCCC
Q 012712 197 R---RN-------------YMTVVNLNAIAIDPRNANLFAVAGS--------------------D----EYTRLYDIRKY 236 (458)
Q Consensus 197 ~---~~-------------~~~~~~v~~~~~~p~~~~~l~~~~~--------------------d----g~i~i~d~~~~ 236 (458)
. .+ ......-..++++|+ ..+++.+.. | +.|.-+|.+++
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~-~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG 301 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE-TNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG 301 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT-TTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCC-CCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence 0 00 000000124567776 345555542 2 57999999988
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeC-CCCc---EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
+..-..+...... . -......++. +... .+|+ .++.++ ++.++++|..+++.....+............
T Consensus 302 ~~~W~~q~~~~d~-w----d~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~ 375 (582)
T 1flg_A 302 EVKWFYQHTPNDA-W----DFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHID 375 (582)
T ss_dssp CEEEEEESSTTCC-S----CCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEEC
T ss_pred CEEEEEeCCCCCc-c----cccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccc
Confidence 7543322211000 0 0000011111 1221 4663 566665 5689999998887654433221000000000
Q ss_pred cCCCCccccCCCCC------CcccccCceeecCccceeeeeEEEEecCCCcEEEEe------------------------
Q 012712 312 MGSDHTSAASPSTA------NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG------------------------ 361 (458)
Q Consensus 312 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~------------------------ 361 (458)
... +..+...... ............+......-..+++ +|+...+++.
T Consensus 376 ~~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 453 (582)
T 1flg_A 376 LKT-GRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAY-SQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGM 453 (582)
T ss_dssp TTT-CCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEE-CTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccC-CCEeEccccCCccccccccCCCceEECcCCccccCCCCceE-CCCCCEEEEechhcceeeecccccccCCCceecc
Confidence 000 0000000000 0000000000011000000112333 5544333322
Q ss_pred ---------cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEE--
Q 012712 362 ---------SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVC-- 430 (458)
Q Consensus 362 ---------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~-- 430 (458)
..+|.|.-||+.+++.+-+..... ++..-.....+.+++.++.|+.++.||.++++.+-.......+.
T Consensus 454 ~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~ 532 (582)
T 1flg_A 454 GFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP 532 (582)
T ss_dssp EEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccC
Confidence 136889999999999887665432 22222222246678889999999999999998763322223332
Q ss_pred EEEEecCCc-EEEe
Q 012712 431 FSIYSADYW-WSKS 443 (458)
Q Consensus 431 ~~~~s~d~~-~l~s 443 (458)
-+.|..+|+ |+++
T Consensus 533 P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 533 PITWEQDGEQYLGV 546 (582)
T ss_dssp CEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEE
Confidence 366778995 5554
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.89 E-value=1.7e-05 Score=67.80 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=139.2
Q ss_pred EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccc---cceeeeeccccc
Q 012712 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILER---GGVETKLLGKHQ 150 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~ 150 (458)
+|+.+.. ..|+..|++..+....+ ........++|.+ .+. ++++-...+.|..+++... ..... .+....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEE-EECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEehh--cCCCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEE-EEeCCC
Confidence 3444443 45888998877654433 2345678999998 554 4555556788999988651 22111 122222
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTR 229 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~ 229 (458)
.....+++.+.+.+++++-...+.|.+.++.......... . .......++++|.++.++++.... +.|.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~---------~~~~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E---------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-C---------TTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-C---------CCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence 3457899987665777777778899999987543322221 1 112468899999756555555443 7888
Q ss_pred EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccc
Q 012712 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (458)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~ 307 (458)
.+++..... ..+....-.....++++|++..|..+. .+.|..++++...
T Consensus 147 ~~~~dG~~~---------------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-------------- 197 (316)
T 1ijq_A 147 KGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-------------- 197 (316)
T ss_dssp EEETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------
T ss_pred EEcCCCCCe---------------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc--------------
Confidence 888754221 111111234578999998776555544 3479999976421
Q ss_pred cccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712 308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (458)
.+.+ ..........++++ . .+.++++-...+.|..++..+++.+..+..
T Consensus 198 -------------------------~~~~~~~~~~~~~P~giav-~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 198 -------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp -------------------------CEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred -------------------------eEEEeecCCccCCcEEEEE-E-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 1111 11000001356666 4 355666666778999999878877666653
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.89 E-value=2.7e-06 Score=68.06 Aligned_cols=213 Identities=14% Similarity=0.085 Sum_probs=132.5
Q ss_pred EeeeeeEeecCC--CceEEEEEecCCCEEEEecCC--CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 50 RLGIYAKLDKHR--GCVNTVSFNTDGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 50 ~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
..++++++ .|. .....+.|++ +.+..+.+.+ ..|+.+|+++++.+...... .........+. ++......-
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~-~~~ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAW-RDRLIQLTW 82 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEE-TTEEEEEES
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEEe-CCEEEEEEe
Confidence 34566666 465 4577899986 5666666665 48999999999988776322 23333322330 344555556
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
.++.+.++|..+.+.+.+....+ .-..++ +++..++++- .++.|.++|.++.+....+....... ....
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~---~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~-----~~~~ 151 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPG---EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGR-----PLDN 151 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSS---CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTE-----ECCC
T ss_pred eCCEEEEEECCcCcEEEEEeCCC---CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCc-----cccc
Confidence 68999999999888777644433 223444 5564555554 57899999999998877776432100 1123
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
++.+.+. + +.+++....+..|.+.|.++++......+........ ........-.+.||++|+++.|...+..
T Consensus 152 lNeLe~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 152 LNELEWV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEEE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeEEe-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 5566665 3 5666666677899999999998776655432111000 0001123457899999987655555543
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.89 E-value=1.9e-05 Score=68.47 Aligned_cols=258 Identities=10% Similarity=0.009 Sum_probs=150.6
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 141 (458)
+..+|.+..++. +|+.+.. ..|+..+++........ . ....+..++|.+. ++.++++-...+.|..+++......
T Consensus 34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLL-N-NLENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEE-C-SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEee-c-CCCceEEEEEecc-ccEEEEEeccCCceEEEecCCCCce
Confidence 334565555543 4444433 45888887765443322 2 3345789999971 3444455556788988988665432
Q ss_pred eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
.. +.........+++.+.+.+++++-...+.|.+.++.......... . .......++++|.++.++++
T Consensus 109 ~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 109 EV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp EE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-T---------TCSCEEEEEEETTTTEEEEE
T ss_pred EE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-C---------CCCCcceEEEecCcCeEEEe
Confidence 21 222223457899998665777777778899999987554322221 1 11246889999976666666
Q ss_pred ecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCC
Q 012712 222 AGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 222 ~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~ 298 (458)
-... +.|..+++..... ..+....-.....++++|++..|..+. .+.|..++++....
T Consensus 177 d~~~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---- 237 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---- 237 (349)
T ss_dssp ECSSSCEEEEEETTSCSC---------------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----
T ss_pred ccCCCCEEEEEeCCCCCc---------------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce----
Confidence 6555 7888888764321 111111234578999998766555444 34688888764210
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 378 (458)
...+..... ...++++ . .+..+++-...+.|..++..+|+.+
T Consensus 238 ----------------------------------~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 238 ----------------------------------KAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp ----------------------------------EEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ----------------------------------EEEEeCCCC--CceEEEE-E-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 011111111 1355665 3 3455556666788988887778777
Q ss_pred EEeecCCceeeEEEe
Q 012712 379 RVIEADRHVVNCIEP 393 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~ 393 (458)
..+.........+++
T Consensus 280 ~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 280 EIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEECSCSCCCCEEE
T ss_pred EEeccCCCCCceEEE
Confidence 666543333444544
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.87 E-value=2.3e-06 Score=79.46 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=72.0
Q ss_pred CCEEEEecC-CCeEEEEEC-CCcceeeeeccCCCc----------ceeEEEEccCCCCeE----EEEEcCCCcEEEeecc
Q 012712 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHND----------NVFQAKIMPFTDDRS----IVTCAADGQVRHAQIL 136 (458)
Q Consensus 73 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~~----l~s~~~dg~i~vw~~~ 136 (458)
+..|+.++. ++.|.-+|. .+|+.+.++...... ....++++| .+.. |+.++.|+.+.-+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence 445666666 788999999 899987776322111 012345544 3444 7888889999999999
Q ss_pred cccceeeeecccccc--ceEE-EEEcCCCCeEEEEec------CCCeEEEEeCCCCCccceeee
Q 012712 137 ERGGVETKLLGKHQG--RAHK-LAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 191 (458)
+++.+.......+.. .+.+ -.+. ++ . ++.++ .++.|+.+|.++++.+..+..
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV-KD-K-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE-TT-E-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCCEEEeecCCCCCccceeecCCEEE-CC-E-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 998876644433211 1111 1111 34 4 44444 379999999999998766654
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.87 E-value=6.4e-07 Score=85.19 Aligned_cols=245 Identities=10% Similarity=0.051 Sum_probs=132.5
Q ss_pred CCCeEEEeeCCC-----------cEEEEEccccccccccccccccccccceEEeeeeeEe-ecCCCceEEEEEecCCCEE
Q 012712 9 NNKRARTSVDKA-----------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDIL 76 (458)
Q Consensus 9 ~~~~l~~~~~d~-----------~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l 76 (458)
++++++.|+.+. .+.+||..+++.... ..+ ..+.....++++.++++++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-------------------~~~~~~~~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-------------------TVTVTKHDMFCPGISMDGNGQIV 257 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-------------------EEEECSCCCSSCEEEECTTSCEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-------------------cccCCCCCCccccccCCCCCCEE
Confidence 777888877543 588899988765421 112 2233344467788899999
Q ss_pred EEecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CC-----CcEEEeecccccceeee-----
Q 012712 77 ISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-AD-----GQVRHAQILERGGVETK----- 144 (458)
Q Consensus 77 ~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d-----g~i~vw~~~~~~~~~~~----- 144 (458)
+.|+. +..+.+||..+++-...-.......-.+++..+ +++.++.|+ .+ ..+.+||..++......
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~ 335 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred EeCCCCCCceEEecCcCCceeECCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence 99984 458999998876532221111111223456667 899999988 34 46899998776543210
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCC---------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
.+..... ...+..++ ++++.++.+ ..+..||..+.............. ........-.++.|...+
T Consensus 336 p~~~~~~---~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~-~~~~~~~~~~av~~~~~~ 410 (656)
T 1k3i_A 336 PMLTADK---QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR-GVAPDAMCGNAVMYDAVK 410 (656)
T ss_dssp GGCCCCT---TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT-EECCCCBTCEEEEEETTT
T ss_pred ccccccc---cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc-ccCCCCCCCceEeccCCC
Confidence 0000000 01122333 344555444 356788887765433222111000 000000112445554434
Q ss_pred CcEEEEecCCC-----------eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---
Q 012712 216 ANLFAVAGSDE-----------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--- 281 (458)
Q Consensus 216 ~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 281 (458)
+++++.|+.++ .+.+||..+.+...... .. +. ....-.+++..|++++++.++.
T Consensus 411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~----------~~-mp-~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS----------NG-LY-FARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT----------TC-CS-SCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc----------CC-CC-CCcccCCeEECCCCCEEEECCcccC
Confidence 67888887543 67788877655321100 00 00 1112234566789999988762
Q ss_pred ---------CcEEEEEccC
Q 012712 282 ---------EFIYLFTQDM 291 (458)
Q Consensus 282 ---------~~i~i~~~~~ 291 (458)
..+.+||..+
T Consensus 479 ~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGG
T ss_pred cCcCCCCcccceEEEcCCC
Confidence 2478888765
No 269
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.85 E-value=7e-05 Score=70.14 Aligned_cols=324 Identities=11% Similarity=0.030 Sum_probs=170.2
Q ss_pred CceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccc
Q 012712 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILER 138 (458)
Q Consensus 62 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~ 138 (458)
.....|++.+.+. +.++-...+.|.+.+++.... ..+....-.....|++.| .+..|+.+.. .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCC
Confidence 5678999998655 445556678999999875433 233233445678899998 6555544442 355666665432
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
..... ..........+++++++..++++-...+.|...|+........... .......+++.++ .+
T Consensus 161 ~~~~l--~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~----------~~~~P~gi~~~~~--~l 226 (619)
T 3s94_A 161 SRFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG----------SLPHPFALTLFED--IL 226 (619)
T ss_dssp SCEEE--ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESSS--EE
T ss_pred ceEEE--EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC----------CCCCceEEEEeCC--EE
Confidence 22211 2223345788999997757777767778899999875433222210 0112356777653 56
Q ss_pred EEEecCCCeEEEEecCCCccCCCccC--CCCCCC--cCCCccc------cccccceeEEEe-CC----------CC----
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDF--GQPADY--FCPPNLI------GDEQVGITGLAF-SD----------QS---- 273 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~--~~~~~~~------~~~~~~i~~~~~-~~----------~~---- 273 (458)
+++-..++.|...|..+++....... ..|... +.+.... ....+....+++ +| .|
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~ 306 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLL 306 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBC
T ss_pred EEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheec
Confidence 66666778899999877653222111 011000 0000000 000000011111 11 11
Q ss_pred -----------cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce
Q 012712 274 -----------ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (458)
Q Consensus 274 -----------~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+|+.+....|+..++..... ......+.+-.
T Consensus 307 ~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~-----------------------------------~~~~~~~~~l~-- 349 (619)
T 3s94_A 307 ENGKTCKDGATELLLLARRTDLRRISLDTPDF-----------------------------------TDIVLQLEDIR-- 349 (619)
T ss_dssp TTSSCBCSSCSEEEEEEESSCEEEEESSSTTC-----------------------------------CCEECCCSCCS--
T ss_pred ccCcccCCCCceEEEEEcccceEEEecCCCcc-----------------------------------ceeEEeccccC--
Confidence 122222222333333322100 00000111111
Q ss_pred eeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccccc
Q 012712 343 VTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 343 ~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
...+++| ++.+..|+ +-...+.|+.+++........+...-..+..+++.+.++ +..+-+..+.|.+.++.+....
T Consensus 350 -~~~~ld~-d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~ 427 (619)
T 3s94_A 350 -HAIAIDY-DPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK 427 (619)
T ss_dssp -SEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred -ccEEEEE-EcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE
Confidence 2577888 77555554 444578899999865443333333335678899987555 4455456788999998876543
Q ss_pred ccc-cccccEEEEEEecCCcEE
Q 012712 421 TLP-TNIEQVCFSIYSADYWWS 441 (458)
Q Consensus 421 ~~~-~~~~~v~~~~~s~d~~~l 441 (458)
.+. .......++++.|...+|
T Consensus 428 ~l~~~~l~~P~~iavdp~~G~l 449 (619)
T 3s94_A 428 ILISEDLEEPRAIVLDPMVGYM 449 (619)
T ss_dssp EEECTTCCSEEEEEEETTTTEE
T ss_pred EEEECCCCCeeeEEEEcCCCcE
Confidence 332 344568899999974333
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.84 E-value=1.4e-05 Score=70.46 Aligned_cols=255 Identities=10% Similarity=0.016 Sum_probs=148.7
Q ss_pred EEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (458)
Q Consensus 65 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 144 (458)
.|.+..++ .+|+.+.. ..|+..++......... . .......++|.+. ++.++++-...+.|..+++........
T Consensus 80 ~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~- 153 (386)
T 3v65_B 80 SCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLL-N-NLENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEV- 153 (386)
T ss_dssp CEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEE-C-SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCCEEEE-
T ss_pred eECCcccc-ceeEeecC-ccceeeccCCCcEEEEe-c-CCCccEEEEEecC-CCeEEEEeCCCCcEEEEecCCCCcEEE-
Confidence 34444443 34444433 56888888765543333 2 3345789999971 344555555678898898865542221
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
+.........+++.+.+..++++-...+.|.+.++........+. . .......++++|.++.++++-..
T Consensus 154 -~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~---------~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 154 -VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp -ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-S---------SCSCEEEEEEETTTTEEEEEECS
T ss_pred -EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-C---------CCCCCcEEEEEcCCCeEEEeccC
Confidence 222223456788988665777777777889998887544322221 1 11246889999976666666555
Q ss_pred C-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCC
Q 012712 225 D-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSS 301 (458)
Q Consensus 225 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~ 301 (458)
. +.|..+++..... ..+..........|+++|++..|..+. .+.|..+++....
T Consensus 223 ~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-------- 279 (386)
T 3v65_B 223 NTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-------- 279 (386)
T ss_dssp SSCEEEEEETTSCSC---------------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS--------
T ss_pred CCCEEEEEeCCCCCc---------------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe--------
Confidence 5 7888888764321 111112234568999998766555444 3468888875421
Q ss_pred CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 381 (458)
....+..... ...++++ . .+.++++-...+.|..++..+++.+..+
T Consensus 280 ------------------------------~~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 280 ------------------------------RKAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp ------------------------------CEEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ------------------------------eEEEEECCCC--CceEEEE-E-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 0111111111 1356665 3 3455556666789999997788777777
Q ss_pred ecCCceeeEEEe
Q 012712 382 EADRHVVNCIEP 393 (458)
Q Consensus 382 ~~~~~~v~~~~~ 393 (458)
.........+++
T Consensus 326 ~~~~~~p~gi~v 337 (386)
T 3v65_B 326 RNKLHFPMDIHT 337 (386)
T ss_dssp ECSCSCCCCEEE
T ss_pred ccCCCCCceEEE
Confidence 644344455544
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.83 E-value=2.5e-06 Score=72.78 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=128.2
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-C
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-D 82 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d 82 (458)
+.++++++++++...++.|..||.+. +... .+. -.+....+++.++|+++++... +
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~---------------------~~~-~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDG-NQQI---------------------HAT-VEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTC-CEEE---------------------EEE-CSSEEEEEEECTTSCEEEEEECTT
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCC-ceEE---------------------EEe-CCCCceeEEEcCCCcEEEEeccCC
Confidence 34566777666666778888888763 3221 111 2346889999999997665533 2
Q ss_pred -CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeee-------eccccccce
Q 012712 83 -RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETK-------LLGKHQGRA 153 (458)
Q Consensus 83 -~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~-------~~~~~~~~v 153 (458)
..|..++..+++...............++..+ ++..+++-..++.|..+|...+.. +... .........
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 24667777777653322111222334555555 666666665678888888754321 1100 001111233
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCcc--ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
+.+ +|++..++++-...+.|..+++.. ++.. ..+. .......++++++ ++++++....+.|.+
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-----------~~~~P~gi~vd~d-G~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-----------EQTNIDDFAFDVE-GNLYGATHIYNSVVR 237 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-----------ESCCCSSEEEBTT-CCEEEECBTTCCEEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-----------ccCCCCCeEECCC-CCEEEEeCCCCeEEE
Confidence 445 778766777777788999999875 3221 1111 1123567899997 567666666788999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC---CCCcEEEEec
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---DQSELLVSYN 280 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~ 280 (458)
+|.. ++.... .. ........++++|. |+++.|...+
T Consensus 238 ~~~~-G~~~~~------------~~-~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 238 IAPD-RSTTII------------AQ-AEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECTT-CCEEEE------------EC-GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred ECCC-CCEEEE------------ee-cccccCCceEEEEecccCCCCEEEEEC
Confidence 9875 321100 00 01112457899998 7866554443
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.77 E-value=5.7e-05 Score=66.81 Aligned_cols=248 Identities=11% Similarity=0.024 Sum_probs=146.2
Q ss_pred EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeeccccc--ceeeeecccccc
Q 012712 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERG--GVETKLLGKHQG 151 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~ 151 (458)
+|+.+. ...|+..+++........ .....+..++|.+ ....| ++-...+.|..+++.... ......+.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444443 367888898866543333 3456788999998 55544 454557888888876522 111111332344
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-CCeEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRL 230 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i 230 (458)
....+++.+.+.+++++-...+.|.+.++........+.. .......++++|.++.++++-.. .+.|..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----------~~~~P~~iavdp~~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----------SSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----------CCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence 6778999986557777777788999999876543333321 11246899999975555555433 477888
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
.++..... ..+....-.....|++++++..|..+. .+.|..++++...
T Consensus 230 ~~~dG~~~---------------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~--------------- 279 (400)
T 3p5b_L 230 GGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--------------- 279 (400)
T ss_dssp EETTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---------------
T ss_pred EeCCCCcc---------------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc---------------
Confidence 88765321 111122234678999998776665554 3468888876421
Q ss_pred ccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV 387 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (458)
.+.+ ..........+++. . .+.++.+-...+.|..+|..+|+.+..+......
T Consensus 280 ------------------------~~~~~~~~~~l~~P~gl~v-~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~ 333 (400)
T 3p5b_L 280 ------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 333 (400)
T ss_dssp ------------------------CEEEEECSSTTSSEEEEEE-E-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSC
T ss_pred ------------------------cEEEEeCCCCCCCCEEEEE-e-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCC
Confidence 1111 11000001345555 2 3445556666788999998888877777644444
Q ss_pred eeEEEe
Q 012712 388 VNCIEP 393 (458)
Q Consensus 388 v~~~~~ 393 (458)
...++.
T Consensus 334 p~~i~v 339 (400)
T 3p5b_L 334 PEDMVL 339 (400)
T ss_dssp EEEEEE
T ss_pred CceEEE
Confidence 555543
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.76 E-value=3.2e-05 Score=68.13 Aligned_cols=201 Identities=10% Similarity=0.045 Sum_probs=122.6
Q ss_pred CceEEEEEecCCCE-EEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 62 GCVNTVSFNTDGDI-LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 62 ~~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
.....++|.+.+.. +++-...+.|..++.+.......+ .........+++.+. .+.++++-...+.|.+.++.....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCce
Confidence 45789999975554 445556788999998766543322 222334567888861 345555666677888888764432
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCC-CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
... +.........++++|.+..++++-... +.|..+++.......... . .......++++|+++.+.
T Consensus 194 ~~l--~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~---------~~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 194 KVL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-T---------HLFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EEE--ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSCEEEEEEEGGGTEEE
T ss_pred EEe--ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-C---------CCCCeeeEEEeCCCCEEE
Confidence 221 333335678999999775666666555 789888887543322221 0 122468999998766666
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~ 292 (458)
++-...+.|..+|+..... ..+..........+++ ..+.++++.. .+.|..++..++
T Consensus 262 ~aD~~~~~I~~~d~dG~~~---------------~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 262 WVDAKHHVIERANLDGSHR---------------KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEETTTTEEEEECTTSCSC---------------EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCEEEEEeCCCCee---------------EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 6667778899999864321 1111112334567777 3444444444 446888875554
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.73 E-value=5.3e-05 Score=65.73 Aligned_cols=220 Identities=10% Similarity=-0.013 Sum_probs=130.0
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
..|+..++........ .. ....+..++|++.+..++++-...+.|..+++........... ......
T Consensus 53 ~~I~~i~~~g~~~~~~--~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~ 119 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLL--LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPG 119 (349)
T ss_dssp SCEEEECTTSCCEEEE--EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCC
T ss_pred cceEEEeCCCCeeEEe--ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----------CCCCcc
Confidence 4577777654433221 22 2345788999987657777777788999999887654332211 112356
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--C-CcE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D-EFI 284 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~-~~i 284 (458)
.+++++.+++++++-...+.|.+.++..... ..+..........++++|.+..|.... . +.|
T Consensus 120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEecCCCeEEEEcCCCCeEEEEcCCCCce---------------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 8888886567777777788999999865321 111222234568999998655444433 2 457
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SD 363 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~ 363 (458)
..++++... ...+... .......+++ +|++..|+.+ ..
T Consensus 185 ~r~~~dG~~---------------------------------------~~~~~~~-~~~~PnGla~-d~~~~~lY~aD~~ 223 (349)
T 3v64_C 185 EASSMDGSG---------------------------------------RRIIADT-HLFWPNGLTI-DYAGRRMYWVDAK 223 (349)
T ss_dssp EEEETTSCS---------------------------------------CEESCCS-SCSCEEEEEE-ETTTTEEEEEETT
T ss_pred EEEeCCCCC---------------------------------------cEEEEEC-CCCCcceEEE-eCCCCEEEEEECC
Confidence 777765421 1111110 1112578888 9866666554 45
Q ss_pred CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
.+.|..+++........+.........+++ ..+.++.+-...+.|...+..++
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 678999998543333333333345677777 34555555556677877774444
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=1.7e-05 Score=64.40 Aligned_cols=217 Identities=13% Similarity=0.118 Sum_probs=129.2
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
.+.+-...+..++++|++..++++...++.|...|+. ++....+... .......+++.++ +.++++.-.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------g~~D~EGIa~~~~-g~~~vs~E~ 89 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------FVKDLETIEYIGD-NQFVISDER 89 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------SCSSEEEEEECST-TEEEEEETT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------CCCChHHeEEeCC-CEEEEEECC
Confidence 4566667899999999876677777788999999988 7766655432 1124678888886 566666667
Q ss_pred CCeEEEEecCCCccC---CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCC
Q 012712 225 DEYTRLYDIRKYKWD---GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 225 dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~ 300 (458)
++.+.++++...... ....+ .......+.....++|+|.+..|.++. .+...+|..........+.
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~---------~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~- 159 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKI---------PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH- 159 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEC---------CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE-
T ss_pred CCcEEEEEcCCCCeeeeeeeecc---------ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee-
Confidence 788999988654321 11000 000112355689999999986665555 3444555554100000000
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEecCCeEEE
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIR 379 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 379 (458)
......+..........++++ +|. +++++.......+.++|. +++.+.
T Consensus 160 -----------------------------i~~~~~~~~~~~~~d~S~l~~-dp~tg~lliLS~~s~~L~~~d~-~g~~~~ 208 (255)
T 3qqz_A 160 -----------------------------ISKDKALQRQFTLDDVSGAEF-NQQKNTLLVLSHESRALQEVTL-VGEVIG 208 (255)
T ss_dssp -----------------------------EEECHHHHHTCCSSCCCEEEE-ETTTTEEEEEETTTTEEEEECT-TCCEEE
T ss_pred -----------------------------eecchhhccccccCCceeEEE-cCCCCeEEEEECCCCeEEEEcC-CCCEEE
Confidence 000000000000012567777 664 556666677788999997 466666
Q ss_pred EeecCC---------ceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 380 VIEADR---------HVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 380 ~~~~~~---------~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
.+.-.. .....|+|.++|++.++ ++.+.++.+..
T Consensus 209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 553221 24688999999985554 67776666654
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.69 E-value=5.2e-05 Score=64.66 Aligned_cols=247 Identities=15% Similarity=0.080 Sum_probs=142.8
Q ss_pred EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v 153 (458)
+|+.+. ...|+..+++.................++.|.+ . +.++.+-...+.|..+++......... +.......
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEE-EEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEE-EcCCCCCc
Confidence 344433 467999998876421222112234567899988 5 445555556788998988665321111 22222356
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEEEEe
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYD 232 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d 232 (458)
..+++.+.+..++++-...+.|.++++.......... . .......++++|.++.++++-. ..+.|...+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-Q---------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-C---------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 7789987665777777778899999987543322221 1 1224688999987555555442 357888888
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
+..... ..+....-.....++++|++..|..+. .+.|..++++...
T Consensus 152 ~dG~~~---------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~----------------- 199 (318)
T 3sov_A 152 MDGSSR---------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN----------------- 199 (318)
T ss_dssp TTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------
T ss_pred cCCCCe---------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-----------------
Confidence 764321 111111234568999999766555544 3478888876421
Q ss_pred ccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN 389 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 389 (458)
.+.+ .+... ...++++ .. +.++.+-...+.|..++..+++....+......+.
T Consensus 200 ----------------------~~~~~~~~~~--~P~glav-~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~ 253 (318)
T 3sov_A 200 ----------------------RQAVVKGSLP--HPFALTL-FE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 253 (318)
T ss_dssp ----------------------CEEEECSCCS--CEEEEEE-ET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCC
T ss_pred ----------------------eEEEecCCCC--CceEEEE-eC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCc
Confidence 1111 11111 2456666 43 44555666678999999888877666654333344
Q ss_pred EEEe
Q 012712 390 CIEP 393 (458)
Q Consensus 390 ~~~~ 393 (458)
+++.
T Consensus 254 ~i~v 257 (318)
T 3sov_A 254 DIHA 257 (318)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 4443
No 277
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.68 E-value=0.00039 Score=69.81 Aligned_cols=359 Identities=11% Similarity=0.095 Sum_probs=168.8
Q ss_pred CCceEEEEEecC------CCEEEEecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 61 RGCVNTVSFNTD------GDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 61 ~~~v~~~~~s~~------~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+.+.+....-+......++.+.......+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 567999999863 368999986 9999999998766554331122234445554432245678888889988666
Q ss_pred ecc--cccceeeee-ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEE
Q 012712 134 QIL--ERGGVETKL-LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAI 209 (458)
Q Consensus 134 ~~~--~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~ 209 (458)
.+. ++.....+. .-+ ..++.-..+...+..-+++++. ....++.-+ ++ +...+. ....+ ...
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~-~~----l~~s~l-------~~~~v~~~~ 698 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN-HK----LVFSNV-------NLKEVNYMC 698 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS-SCEEEEESS-SS----EEEEEB-------SSSCCCEEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC-CCEEEEEcC-Cc----eEEecc-------ChHHhceEe
Confidence 554 333222211 112 2344444444444333444443 333344322 22 111111 00012 233
Q ss_pred EECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 210 AIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 210 ~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
.|+... ++-++..+ ++.++|..+...+.. ....+ .-...+..++++|+.+.++.+.... ..++
T Consensus 699 ~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~------------~~~~i--pL~~Tprri~y~~~~~~~~v~~~~~-~~~~ 762 (1158)
T 3ei3_A 699 PLNSDGYPDSLALAN-NSTLTIGTIDEIQKL------------HIRTV--PLYESPRKICYQEVSQCFGVLSSRI-EVQD 762 (1158)
T ss_dssp EECCSSSTTEEEEEC-SSCEEEEEECCSSSE------------EEEEE--ECSSEEEEEEEEGGGTEEEEEEEEE-EEEC
T ss_pred ccCcccCCCcEEEEc-CCceEEEEecccCCe------------eEEEE--eCCCCceEEEEcCCCCEEEEEEEec-cccc
Confidence 343321 22344333 445999887543210 00111 1134678899999877665543221 1111
Q ss_pred ccCCCCCCCCC----------CCC----ccccccccccCC--CCccccCCCCCCcccccCce--eecCccceeeeeEEEE
Q 012712 289 QDMGLGPNPPP----------SSP----VSTRSEASEMGS--DHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNF 350 (458)
Q Consensus 289 ~~~~~~~~~~~----------~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~ 350 (458)
........... ..+ .........+.+ ....+.. -++.....+. .+...+....+..+.|
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~l---idp~t~~~i~~~~l~~nE~~~sv~~v~~ 839 (1158)
T 3ei3_A 763 TSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLI---IDQHTFEVLHAHQFLQNEYALSLVSCKL 839 (1158)
T ss_dssp SSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEE---EETTTCCEEEEEECCTTEEEEEEEEECC
T ss_pred cccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEE---EeCCCCeEEEEEeCCCCcceEEEEEEEE
Confidence 11000000000 000 000000000000 0000000 0001111111 2223333222333333
Q ss_pred ecCC-CcEEEEec----------CCCeEEEEEecCCeEEEEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 351 FGPK-CEYVVSGS----------DCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 351 ~s~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
..+ ..+++.|+ ..|.|++|++..++.....+ ...++|++++-- +|++||.. .++|++|++...+
T Consensus 840 -~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 840 -GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp -TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTS
T ss_pred -ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCc
Confidence 332 46888775 34899999997554332221 235678887643 45555443 4799999998654
Q ss_pred cccc-ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 419 RATL-PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 419 ~~~~-~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.+.. ..+...+..+.....+.+++.|..-.+|.+..|-
T Consensus 916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 3331 1111113333444467888888888888888774
No 278
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.63 E-value=0.00037 Score=65.40 Aligned_cols=348 Identities=9% Similarity=0.023 Sum_probs=187.1
Q ss_pred CceEEEEEecCCCEEE-EecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 62 GCVNTVSFNTDGDILI-SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
..+..|+|++.+..|. +-..++.|..++++.......+ .........+++.+. .+++.++-...+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWL-GKNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSTTC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeC-CCEEEEEECCCCEEEEEecCCCcE
Confidence 4577999998665554 5556789999998755433222 222345678888761 355556666678899998865432
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEe-cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
... +...-.....+++.|....++++- +..+.|...++.......... .......++++++++.+.
T Consensus 115 ~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-----------~~~~P~GlalD~~~~~LY 181 (628)
T 4a0p_A 115 QVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-----------NVGRANGLTIDYAKRRLY 181 (628)
T ss_dssp EEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----------SCSSEEEEEEETTTTEEE
T ss_pred EEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-----------CCCCcceEEEccccCEEE
Confidence 221 223335568999999654665554 235688888887554333221 122468999999755666
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~ 298 (458)
++-...+.|..+|+..... ............+++.. +.++++-. .+.|...|..++.....+
T Consensus 182 ~aD~~~~~I~~~d~dG~~~----------------~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 182 WTDLDTNLIESSNMLGLNR----------------EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEETTTTEEEEEETTSCSC----------------EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEECCCCEEEEEcCCCCce----------------EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 6666778899999865431 11111122345677655 34444443 446777776555422111
Q ss_pred CCC---Cccccc-----------------------------cccccCCCCccccCCCCC--Cc------ccccCce----
Q 012712 299 PSS---PVSTRS-----------------------------EASEMGSDHTSAASPSTA--NT------DVRIAPQ---- 334 (458)
Q Consensus 299 ~~~---~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~--~~------~~~~~~~---- 334 (458)
... +..... ...+..+.+..+...... .. .....+.
T Consensus 245 ~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l 324 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVI 324 (628)
T ss_dssp ECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECC
T ss_pred ecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEec
Confidence 100 000000 000001111111000000 00 0000000
Q ss_pred --------eecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEecCCeEEEEeec------CCceeeEEEecCCCCe
Q 012712 335 --------VYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEA------DRHVVNCIEPHPHSTV 399 (458)
Q Consensus 335 --------~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~~~ 399 (458)
.+..+ ....+.+++| ++.++.|+.+ ...+.|+.+++........+.. ....+..|++...++.
T Consensus 325 ~~~~~~~~~l~~~-~~~~~~~ld~-d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~n 402 (628)
T 4a0p_A 325 DEQQSPDIILPIH-SLRNVRAIDY-DPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY 402 (628)
T ss_dssp CTTCCCCEECCCT-TCSCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTE
T ss_pred ccccCceEEEEeh-hcCCceEEEE-ecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCe
Confidence 00001 1112667888 7765555544 4467888888754332333322 2235789999988665
Q ss_pred EE-EeecCCcEEEecCCccccccc-ccccccEEEEEEec-CCcEEEe
Q 012712 400 LA-SSGIESDIKILTPNAADRATL-PTNIEQVCFSIYSA-DYWWSKS 443 (458)
Q Consensus 400 l~-s~~~d~~i~iw~~~~~~~~~~-~~~~~~v~~~~~s~-d~~~l~s 443 (458)
|. +-+..+.|.+.++.......+ ........++++.| .|....+
T Consensus 403 LY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~t 449 (628)
T 4a0p_A 403 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFT 449 (628)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEe
Confidence 54 555678899998875533332 23445688999999 4544444
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.62 E-value=1.7e-06 Score=83.46 Aligned_cols=192 Identities=11% Similarity=0.037 Sum_probs=112.0
Q ss_pred CCC-CCCCeEEEeeC-C----CcEEEEEcccc-ccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEE
Q 012712 5 SNN-NNNKRARTSVD-K----ALVDVWLRELG-QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (458)
Q Consensus 5 ~~~-~~~~~l~~~~~-d----~~i~iw~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 77 (458)
.+| |||++||-+.+ + ..|+++|+.+| +.+.. .+.. ....++|+|||+.|+
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------~~~~---~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------KVSG---TNGEIVWGPDHTSLF 236 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------CEEE---ECSCCEECSSTTEEE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------cccC---ceeeEEEecCCCEEE
Confidence 468 99998886543 2 35999999988 64321 1111 134688999998888
Q ss_pred EecCC-----CeEEEEECCCccee--eeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeeccccccee--eee
Q 012712 78 SGSDD-----RRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVE--TKL 145 (458)
Q Consensus 78 s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~--~~~ 145 (458)
....| ..|.++++.++... ..+..........+.|+| |+++|+..+. ...|.++|+.++.... ...
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l 314 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV 314 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES
T ss_pred EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEe
Confidence 76654 36888888776422 222112334466889999 9998886553 3468888887653211 222
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCC----CeEEEEeCCCC-Cccc-eeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTG-AATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
..........+.|+..+ .+++....+ ..|..+|+.++ +... .+... ....+..+.+. ++.++
T Consensus 315 ~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~---------~~~~l~~~~~~--~~~lv 382 (751)
T 2xe4_A 315 RPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS---------EDVFMESIAVR--SNYLV 382 (751)
T ss_dssp SCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC---------SSEEEEEEEEC--SSEEE
T ss_pred ecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC---------CCcEEEEEEEE--CCEEE
Confidence 33344455556655444 565655443 36777777653 2122 22110 11134556665 35677
Q ss_pred EEecCCCeEE--EEec
Q 012712 220 AVAGSDEYTR--LYDI 233 (458)
Q Consensus 220 ~~~~~dg~i~--i~d~ 233 (458)
++...++..+ ++|+
T Consensus 383 ~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 383 VAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EEEEeCCEEEEEEEec
Confidence 7777788654 4554
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.62 E-value=0.00017 Score=61.56 Aligned_cols=230 Identities=10% Similarity=0.012 Sum_probs=133.6
Q ss_pred eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEEC
Q 012712 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDW 90 (458)
Q Consensus 12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~ 90 (458)
+|+.+. ...|+..|+.+++... .+. .......++|++++..| ++-...+.|..+++
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~---------------------~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~ 59 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS---------------------LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE---------------------EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEEC-CCeEEEEECCCcceEe---------------------hhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEEC
Confidence 344444 3458888888654321 122 33457899999866544 45556689999998
Q ss_pred CC---cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712 91 KT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (458)
Q Consensus 91 ~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (458)
.. +.....+....-.....+++.+. ++.+.++-...+.|.+.+......... +.........++++|.+..+++
T Consensus 60 ~g~~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 60 DRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp --------CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTTEEEE
T ss_pred CCCCCCcccEEEEeCCCCCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEE--EECCCCCcceEEeCCCCCEEEE
Confidence 75 12222222222245678888861 445555656778999999864332221 2223346789999997656666
Q ss_pred EecCC-CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712 168 TCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (458)
Q Consensus 168 s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (458)
+.... +.|...++.... ...+... .......++++|+++.++++-...+.|..+|+.....
T Consensus 137 ~d~~~~~~I~~~~~dG~~-~~~~~~~---------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------- 198 (316)
T 1ijq_A 137 TDWGTPAKIKKGGLNGVD-IYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------- 198 (316)
T ss_dssp EECSSSCEEEEEETTSCC-EEEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------
T ss_pred EccCCCCeEEEEcCCCCC-eEEEEEC---------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--------
Confidence 65443 788888876433 2222111 1124689999987666666666778999999874321
Q ss_pred CCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712 247 PADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (458)
Q Consensus 247 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~ 293 (458)
..+.. ........+++.. +.++++.. .+.|..++..++.
T Consensus 199 -------~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 199 -------KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp -------EEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred -------EEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCc
Confidence 01111 1123456777753 55555544 4578888876654
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.59 E-value=8.7e-05 Score=66.31 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=114.9
Q ss_pred ceEEEEEecC--CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---C-cEEEeecc
Q 012712 63 CVNTVSFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G-QVRHAQIL 136 (458)
Q Consensus 63 ~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g-~i~vw~~~ 136 (458)
.-..|+|+|+ ...|..+...+.|+.+|..++...... ........+++++ +++++++.... . .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECT--TCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECC--CCCEEEEcCCCCcccceEEEEECC
Confidence 3568999985 344555544488999998777654333 3445688999999 99855544321 1 12223322
Q ss_pred cccceeeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
. .......+. .......++++| ++ .++++-..++.|+.+|..++.....+.... .......++|+|++
T Consensus 216 ~-~~~~~~~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--------~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 216 S-GFTERLSLC-NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMD--------TKGSNFHIVWHPTG 284 (433)
T ss_dssp G-TTCCEEEEE-ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECS--------CCSSCEEEEECTTS
T ss_pred C-Ceecccccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccC--------CCCCcccEEEeCCC
Confidence 1 111001111 223456788999 55 666666677899999988776522221110 01123469999984
Q ss_pred CcEEEEecCCCeEEEEecCC--CccCCCccC-CC-CCCCcCCCccccccccceeEEEe---------CCCCcEEEEecC-
Q 012712 216 ANLFAVAGSDEYTRLYDIRK--YKWDGSTDF-GQ-PADYFCPPNLIGDEQVGITGLAF---------SDQSELLVSYND- 281 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~l~~~~~- 281 (458)
..++++-...+.|+.++... ........+ +. ....+.........-.....+++ .++|.++++-..
T Consensus 285 ~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n 364 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS 364 (433)
T ss_dssp SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence 33555666678899988653 221100000 00 00000000000011234667888 777777776654
Q ss_pred CcEEEEEc
Q 012712 282 EFIYLFTQ 289 (458)
Q Consensus 282 ~~i~i~~~ 289 (458)
+.|+.++.
T Consensus 365 ~~I~~~~~ 372 (433)
T 4hw6_A 365 HTVRVLTP 372 (433)
T ss_dssp TEEEEECT
T ss_pred CEEEEECC
Confidence 46888874
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.59 E-value=0.00017 Score=61.49 Aligned_cols=202 Identities=8% Similarity=0.022 Sum_probs=121.3
Q ss_pred ceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712 63 CVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (458)
Q Consensus 63 ~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 141 (458)
...+++|.+.+ .++.+-...+.|..++.+.+.....+....-.....+++.+. ++.++++-...+.|.++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEE
Confidence 46689999854 455555667889999987664222221222245667888761 4555566666788999998654322
Q ss_pred eeeeccccccceEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
.. ..........+++.|.+..++++-. ..+.|...++.......... . .-.....++++|+++.+.+
T Consensus 115 ~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~---------~l~~Pnglavd~~~~~lY~ 182 (318)
T 3sov_A 115 VL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S---------EIYWPNGLTLDYEEQKLYW 182 (318)
T ss_dssp EE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSCEEEEEEETTTTEEEE
T ss_pred EE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-C---------CCCCccEEEEeccCCEEEE
Confidence 21 2233455689999987646555542 35788888876433222111 1 1124689999997666666
Q ss_pred EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (458)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~ 293 (458)
+=...+.|..+|+..... ..+..........+++..+ .++.+-. .+.|..++..++.
T Consensus 183 aD~~~~~I~~~d~dG~~~---------------~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 183 ADAKLNFIHKSNLDGTNR---------------QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EETTTTEEEEEETTSCSC---------------EEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCEEEEEcCCCCce---------------EEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCC
Confidence 666778899999864321 1111112334567777543 3444433 4578888886654
No 283
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.58 E-value=0.00048 Score=64.55 Aligned_cols=357 Identities=7% Similarity=-0.025 Sum_probs=178.8
Q ss_pred CCceEEEEEecCCCEEEEe-cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccc
Q 012712 61 RGCVNTVSFNTDGDILISG-SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILER 138 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~ 138 (458)
-+....|+|++.+..|..+ ...+.|..++++.......+....-.....+++.+ .+. ++++-...+.|.+.++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW--LGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCCC
Confidence 3457799999866655544 44678999998755322222223335678899987 554 4555556789999998654
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (458)
..... ..........|++.|.+..++++-- ..+.|...++.......... . .......++++++++.
T Consensus 117 ~~~~l--~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~---------~~~~P~Glald~~~~~ 184 (619)
T 3s94_A 117 LRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S---------EIYWPNGLTLDYEEQK 184 (619)
T ss_dssp SCEEE--ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEETTTTE
T ss_pred CEEEE--EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-C---------CCCCCcEEEEEccCCE
Confidence 32221 2233445778999997646666542 24677777776443322221 1 1124689999997566
Q ss_pred EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCC
Q 012712 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPN 296 (458)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~ 296 (458)
+.++-...+.|..+|+....... +..........+++..+ .+.++-. .+.|...|..++....
T Consensus 185 LY~aD~~~~~I~~~~~dG~~~~~---------------~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 185 LYWADAKLNFIHKSNLDGTNRQA---------------VVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEETTTCCEEEESSSCCEEC------------------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred EEEEeCCCCeEEEecCCCCccEE---------------EEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 66666677889999886543211 11111122346677665 3334433 4579999988776443
Q ss_pred CCCCC---CccccccccccCCCCccccCCCCC-CcccccCceeecCccceeeeeEEEE----ecCC--------CcEEEE
Q 012712 297 PPPSS---PVSTRSEASEMGSDHTSAASPSTA-NTDVRIAPQVYKGHRNCVTVKGVNF----FGPK--------CEYVVS 360 (458)
Q Consensus 297 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~----~s~~--------~~~l~~ 360 (458)
.+... +..........-|.+ ..... ....-..+......... ..|.+- ..+| ..+|+.
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~----~n~C~~~ng~Cs~lCl~~~~~~~--~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNA----TNPCGIDNGGCSHLCLMSPVKPF--YQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCC----CCTTTTTGGGCSSEEEECSSTTS--EEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred EEecCCCCCcEEEEEccccCCCc----cccccCCCCcccceEECCCCCCC--ceEeCCchheecccCcccCCCCceEEEE
Confidence 33211 111111000000000 00000 00000000000000000 111110 0111 224444
Q ss_pred ecCCCeEEEEEecCCeEE-EEee-cCCceeeEEEecCCCCeEEEe-ecCCcEEEecCCccccccc-ccccccEEEEEEec
Q 012712 361 GSDCGRIFIWKKKGGELI-RVIE-ADRHVVNCIEPHPHSTVLASS-GIESDIKILTPNAADRATL-PTNIEQVCFSIYSA 436 (458)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~~-~~~~~~v~~~~~s~ 436 (458)
+. .+.|+..++...... ..+. ..-..+.+++|.+.+..|..+ ...+.|+.+++.+.....+ .........+++.+
T Consensus 323 ~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~ 401 (619)
T 3s94_A 323 AR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDW 401 (619)
T ss_dssp EE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred Ec-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEec
Confidence 33 456777777554321 1111 112346789999865555444 4578899898876543322 22334567888887
Q ss_pred CCc-EEEeeecCCceEEEE
Q 012712 437 DYW-WSKSQNFSCSILLFE 454 (458)
Q Consensus 437 d~~-~l~s~~~d~~i~~w~ 454 (458)
.+. +..+-+..+.|.+.+
T Consensus 402 ~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 402 VARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp TTTEEEEEETTTTEEEEEE
T ss_pred ccCcEEEEeCCCCcEEEEe
Confidence 554 444444455565543
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=8.9e-06 Score=78.53 Aligned_cols=193 Identities=9% Similarity=0.068 Sum_probs=105.9
Q ss_pred ceEEEEEC-CCCCcEEEEe-cCCC----eEEEEecCCC-ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712 205 NLNAIAID-PRNANLFAVA-GSDE----YTRLYDIRKY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (458)
Q Consensus 205 ~v~~~~~~-p~~~~~l~~~-~~dg----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (458)
.+...+|| || +++|+.+ ..+| .|+++|+.++ +... .. . ......++|+|||+.|+
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------~~-~---~~~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------DK-V---SGTNGEIVWGPDHTSLF 236 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------------CC-E---EEECSCCEECSSTTEEE
T ss_pred EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------------cc-c---cCceeeEEEecCCCEEE
Confidence 46788999 98 5655543 3333 4999999887 4210 00 0 11245789999998777
Q ss_pred EecCC------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 278 SYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 278 ~~~~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
....+ .|+++++.++.. .....+...... ....+.|
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~------------------------------------~~~lv~~~~~~~-~~~~~~~- 278 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQS------------------------------------EDVCLYEEHNPL-FSAFMYK- 278 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGG------------------------------------GCEEEEECCCTT-CEEEEEE-
T ss_pred EEEECCCCCCCEEEEEECCCCch------------------------------------hcEEEEecCCCc-eEEEEEE-
Confidence 65521 366777654210 011122111111 2456777
Q ss_pred cCCCcEEEEecC---CCeEEEEEecCCe-EE--EEee-cCCceeeEEEecCCCCeEEEeecC--C--cEEEecCCc-ccc
Q 012712 352 GPKCEYVVSGSD---CGRIFIWKKKGGE-LI--RVIE-ADRHVVNCIEPHPHSTVLASSGIE--S--DIKILTPNA-ADR 419 (458)
Q Consensus 352 s~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d--~--~i~iw~~~~-~~~ 419 (458)
+|||++|+..+. ...|+++|+.++. .. ..+. ...+...++.|+..+.+++....+ + .|..+++.+ ++.
T Consensus 279 SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~ 358 (751)
T 2xe4_A 279 AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW 358 (751)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence 999999886552 3578889987652 22 3333 333445556555444444554443 3 566666664 233
Q ss_pred cc-ccccccc--EEEEEEecCCcEEEeeecCCceEEEE
Q 012712 420 AT-LPTNIEQ--VCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 420 ~~-~~~~~~~--v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
.. +..+... +..+.+. .+.++++...++..+||-
T Consensus 359 ~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 359 SHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred eeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 34 4444443 4444443 234556677777655553
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.56 E-value=0.0002 Score=68.74 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=112.3
Q ss_pred EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccc
Q 012712 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGR 152 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~ 152 (458)
+|+.+.. ..|+..++......... .....+..++|.+. ++.++++-...+.|+.+++..... .....+......
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEE--CSCSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred ccccccc-cceeEeeccCCcceeee--cCCCceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 4444333 45777787765543332 33456789999871 344455555667888888865311 111123323455
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEEEE
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLY 231 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~ 231 (458)
...|++.+.+.+++++-...+.|.+.++........+. . .......|+++|.++.++++-... +.|...
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~---------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E---------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-C---------TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-C---------CCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 67899998876777787888999999987554332222 1 112478999999755555554333 678888
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccC
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~ 291 (458)
++..... ..+....-.....|++++.+..|..+. .+.|..+++..
T Consensus 543 ~~dG~~~---------------~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 543 GLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp ETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ecCCCce---------------EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 8765331 112222234678999997766555544 34688888764
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=7.6e-05 Score=66.73 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=130.3
Q ss_pred ceEEEEEcC-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-CC---
Q 012712 152 RAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DE--- 226 (458)
Q Consensus 152 ~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--- 226 (458)
....++++| ++.. |+.+...+.|+.+|+..+....... .......++++++ +++|+++.. ++
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-----------~~~~P~~ia~d~~-G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-----------GLSKVRTICWTHE-ADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-----------CCSCEEEEEECTT-SSEEEEEECCSCTTS
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-----------CCCCcceEEEeCC-CCEEEEEeCCCCccc
Confidence 457789998 3424 5555444889999988765433322 1224789999998 564444443 22
Q ss_pred -eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCc
Q 012712 227 -YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV 303 (458)
Q Consensus 227 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~ 303 (458)
.+..++. .+..... .... .......++++| +|.++++-. .+.|+.++......
T Consensus 205 ~~v~~~~~-~g~~~~~-------------~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--------- 260 (430)
T 3tc9_A 205 PNNYILTR-ESGFKVI-------------TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--------- 260 (430)
T ss_dssp EEEEEEEG-GGTSCSE-------------EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE---------
T ss_pred ceEEEEeC-CCceeee-------------eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE---------
Confidence 2333443 2221100 0011 123467888999 677666654 45799999765210
Q ss_pred cccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecC--CeE--E
Q 012712 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG--GEL--I 378 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~--~~~--~ 378 (458)
.......... ....+++ +|+|++|+ +-...+.|+.++... ++. +
T Consensus 261 ---------------------------~~~~~~~~~~---~P~gia~-~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~ 309 (430)
T 3tc9_A 261 ---------------------------TPLFTIQDSG---WEFHIQF-HPSGNYAYIVVVNQHYILRSDYDWKTKRLTTP 309 (430)
T ss_dssp ---------------------------EEEEECSSSS---CCEEEEE-CTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred ---------------------------EEEEEcCCCC---cceeEEE-cCCCCEEEEEECCCCEEEEEeCCcccccccce
Confidence 0011111111 2467888 99999555 445678999988753 222 2
Q ss_pred EEeecC------C---------ceee-EEEec--------CCCCeEEEeecCCcEEEecCCcccccccccc---------
Q 012712 379 RVIEAD------R---------HVVN-CIEPH--------PHSTVLASSGIESDIKILTPNAADRATLPTN--------- 425 (458)
Q Consensus 379 ~~~~~~------~---------~~v~-~~~~s--------~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--------- 425 (458)
..+.+. . .... .++.. ++|.++++=...+.|+.++.. +....+.+.
T Consensus 310 ~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~ 388 (430)
T 3tc9_A 310 YIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRVTTFAGRGSNGTSGYN 388 (430)
T ss_dssp EEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEEEEEEECCTTSSSSCB
T ss_pred EEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcEEEEEeCCCCCCCccc
Confidence 222211 0 1123 45553 346666665667889998854 333322211
Q ss_pred ---------cccEEEEEEecC-CcEEEeeecCCceEEEE
Q 012712 426 ---------IEQVCFSIYSAD-YWWSKSQNFSCSILLFE 454 (458)
Q Consensus 426 ---------~~~v~~~~~s~d-~~~l~s~~~d~~i~~w~ 454 (458)
......++++|+ |.++++-.....|+.++
T Consensus 389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 124789999995 66666655666777765
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=0.00017 Score=64.51 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=95.4
Q ss_pred ceEEEEEec-CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CC----cEEEeecc
Q 012712 63 CVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DG----QVRHAQIL 136 (458)
Q Consensus 63 ~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg----~i~vw~~~ 136 (458)
....|+++| ++..|..+...+.|+.+|++.+...... ........++|++ +++.|+.+.. ++ .+.+.+ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~-~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTH--EADSMIITNDQNNNDRPNNYILT-R 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeC--CCCEEEEEeCCCCcccceEEEEe-C
Confidence 356889998 3545555554488999998876543332 3445688999999 9986665554 22 233333 2
Q ss_pred cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
.+.......+. .......++++|++..++++-..++.|..++...+......... .......++|+|+ +
T Consensus 213 ~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------~~~~P~gia~~pd-G 281 (430)
T 3tc9_A 213 ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------DSGWEFHIQFHPS-G 281 (430)
T ss_dssp GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------SSSCCEEEEECTT-S
T ss_pred CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------CCCcceeEEEcCC-C
Confidence 33222111122 12345678899943367777777889999998866432222211 1123578999998 4
Q ss_pred c-EEEEecCCCeEEEEecCC
Q 012712 217 N-LFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 217 ~-~l~~~~~dg~i~i~d~~~ 235 (458)
+ ++++-...+.|..++...
T Consensus 282 ~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 282 NYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SEEEEEETTTTEEEEEEEET
T ss_pred CEEEEEECCCCEEEEEeCCc
Confidence 5 555556677888887653
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.53 E-value=6.9e-05 Score=66.97 Aligned_cols=236 Identities=9% Similarity=0.055 Sum_probs=133.1
Q ss_pred ceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC---C
Q 012712 152 RAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---E 226 (458)
Q Consensus 152 ~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g 226 (458)
....++++|+ +..+ +.+...+.|+.+|+.++....... ....+..++++++ ++++++...+ .
T Consensus 140 ~P~gvavd~~s~~g~L-yv~D~~~~I~~id~~~g~v~~~~~-----------~~~~P~giavd~d-G~lyVad~~~~~~~ 206 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDL-YWVGQRDAFRHVDFVNQYVDIKTT-----------NIGQCADVNFTLN-GDMVVVDDQSSDTN 206 (433)
T ss_dssp CCCEEEECTTTTTCEE-EEECBTSCEEEEETTTTEEEEECC-----------CCSCEEEEEECTT-CCEEEEECCSCTTS
T ss_pred CCceEEEccccCCCEE-EEEeCCCCEEEEECCCCEEEEeec-----------CCCCccEEEECCC-CCEEEEcCCCCccc
Confidence 4568999995 3254 444444889999998776543332 1224789999998 4544443321 1
Q ss_pred -eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCc
Q 012712 227 -YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV 303 (458)
Q Consensus 227 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~ 303 (458)
.+..++.... ... ..... .......++++| +|.+.++-. .+.|+.++..++...
T Consensus 207 ~gv~~~~~~~~-~~~-------------~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-------- 263 (433)
T 4hw6_A 207 TGIYLFTRASG-FTE-------------RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-------- 263 (433)
T ss_dssp EEEEEECGGGT-TCC-------------EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--------
T ss_pred ceEEEEECCCC-eec-------------ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--------
Confidence 1333332211 000 00111 123456788999 676665554 446888887643110
Q ss_pred cccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-ecCCCeEEEEEec--CCeE--E
Q 012712 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKK--GGEL--I 378 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-~~~dg~i~iwd~~--~~~~--~ 378 (458)
...+...... .-..+++ +|+|++|+. -...+.|+.++.. ++.. .
T Consensus 264 -----------------------------~~~~~~~~~~-~~~~ia~-dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 264 -----------------------------EEEVMMDTKG-SNFHIVW-HPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp -----------------------------EEEEECSCCS-SCEEEEE-CTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred -----------------------------EEEeccCCCC-CcccEEE-eCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 0001000011 1235887 999995554 4556899998865 2321 1
Q ss_pred EEeecC---------------CceeeEEEe---------cCCCCeEEEeecCCcEEEecCCccccccccc----------
Q 012712 379 RVIEAD---------------RHVVNCIEP---------HPHSTVLASSGIESDIKILTPNAADRATLPT---------- 424 (458)
Q Consensus 379 ~~~~~~---------------~~~v~~~~~---------s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---------- 424 (458)
..+.+. -.....+++ .++|.++++-...+.|+.++.. +....+.+
T Consensus 313 ~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~ 391 (433)
T 4hw6_A 313 YIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYV 391 (433)
T ss_dssp EEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCB
T ss_pred EEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccC
Confidence 222221 123567899 7778777777777899999864 33322221
Q ss_pred --------ccccEEEEEEe-cCCcEEEeeecCCceEEEEE
Q 012712 425 --------NIEQVCFSIYS-ADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 425 --------~~~~v~~~~~s-~d~~~l~s~~~d~~i~~w~~ 455 (458)
.......++++ ++|.+.++=.....|+.++.
T Consensus 392 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 392 DGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 11237789999 67777766666677877653
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.51 E-value=0.00039 Score=59.72 Aligned_cols=277 Identities=9% Similarity=0.043 Sum_probs=143.7
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 137 (458)
...+.+|.|.+++..++++ .++.| +...+.++.-.... ......+.++.|.+ +..++ ++..+.|.. ...
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i~~--S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIMLH--TTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEEEE--ESS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeEEE--ECC
Confidence 4579999998878777754 56755 33444443212111 11245788999875 34444 445564433 323
Q ss_pred -ccceeeeec-cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 138 -RGGVETKLL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 138 -~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
++.-..... ..+...+..+.+.+++ .+++.+ .++.|.. ....++.-...... ....+..+++.|+
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~---------~~~~~~~~~~~~~- 173 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQE---------AIGVMRNLNRSPS- 173 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECS---------CCCCEEEEEECTT-
T ss_pred CCCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecC---------CCcceEEEEEcCC-
Confidence 222221111 1233456778777666 555554 4554422 12223322222111 1225788999996
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
+.+++++...+..+-.|-..... ..........+..+++.+++++++.+.++.+++.+.+.+..-
T Consensus 174 ~~~~~~g~~G~~~~S~d~gG~tW---------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 174 GEYVAVSSRGSFYSTWEPGQTAW---------------EPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp SCEEEEETTSSEEEEECTTCSSC---------------EEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred CcEEEEECCCcEEEEeCCCCCce---------------eECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence 56666654433333333211110 001112245678899999998888777777766542211100
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
.....- ..... .+.++.+ .+++..++++. +|.+ ++....
T Consensus 239 -----------------------------------~~~~~~~~~~~~--~~~~v~~-~~~~~~~~~g~-~g~i-~~S~Dg 278 (327)
T 2xbg_A 239 -----------------------------------GELLSPLRRNSV--GFLDLAY-RTPNEVWLAGG-AGAL-LCSQDG 278 (327)
T ss_dssp -----------------------------------CCCBCTTSSCCS--CEEEEEE-SSSSCEEEEES-TTCE-EEESST
T ss_pred -----------------------------------EeccCCcccCCc--ceEEEEe-cCCCEEEEEeC-CCeE-EEeCCC
Confidence 000000 00111 2677887 88887777665 6766 344444
Q ss_pred CeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 375 GELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 375 ~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
|+.-..+.. ....+.++.|.++++ ++.++.+|.|.-++-
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 554444432 235678888876555 555667888776653
No 290
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.50 E-value=2.4e-06 Score=81.33 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=135.1
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE-cCCCcEEEeecccc---cceeeeeccccccceEEEE
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILER---GGVETKLLGKHQGRAHKLA 157 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~---~~~~~~~~~~~~~~v~~~~ 157 (458)
...|+..++...+....+ .....+..++|.+ .+..|+.+ ...+.|+.+++... ..... .+.........++
T Consensus 385 ~~~I~~id~~~~~~~~~~--~~~~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~-~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECCS--CCCTTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCC-BCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceeee--ccCcceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEE-EEeCCCCCcceEE
Confidence 356888888766543333 2234567889988 66555554 44678999888651 11111 1211223356688
Q ss_pred EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEEEEecCCC
Q 012712 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKY 236 (458)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~ 236 (458)
+.+.+.+++++-...+.|.++++........+.. .......++++|.++.++++-... +.|..+++...
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC----------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC----------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 8866546666666778899999876543322211 112357789999755555544333 67877776542
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
.. ..+....-.....|+|+|++..|..+. .+.|..+++.....
T Consensus 530 ~~---------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------------------- 574 (699)
T 1n7d_A 530 DI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------------- 574 (699)
T ss_dssp CC---------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--------------------
T ss_pred Ce---------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--------------------
Confidence 21 111111223467899999765544443 34688888764211
Q ss_pred CCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 393 (458)
+.+.. ........++++ ..+ .++++....+.|..++..+++.+..+......+..|++
T Consensus 575 -------------------~~~~~~~~~~~~P~glav-d~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 575 -------------------KTILEDEKRLAHPFSLAV-FED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp -------------------EEECCCSSSCSSCCCCEE-ETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred -------------------EEEEecCCcCCCceEeEE-ECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 11100 000001234444 333 45555566789999998888888777543334556655
Q ss_pred cCC
Q 012712 394 HPH 396 (458)
Q Consensus 394 s~~ 396 (458)
.+.
T Consensus 634 ~~~ 636 (699)
T 1n7d_A 634 FHQ 636 (699)
T ss_dssp CSS
T ss_pred eCc
Confidence 433
No 291
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.49 E-value=0.00044 Score=59.33 Aligned_cols=274 Identities=9% Similarity=0.015 Sum_probs=141.4
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec--cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 181 (458)
...+.++.|.+ ++..+++ +..|.| +.....++.-..... ......+.++.+.+ + ..++ ++..+.|.. ...
T Consensus 35 ~~~~~~v~~~~--~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~-~g~~g~i~~-S~D 106 (327)
T 2xbg_A 35 TATILDMSFID--RHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWI-VGEPPIMLH-TTD 106 (327)
T ss_dssp SSCEEEEEESS--SSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEE-EEETTEEEE-ESS
T ss_pred CCcEEEEEECC--CCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEE-EECCCeEEE-ECC
Confidence 34788999986 6666664 456654 222222322121111 12244688899986 3 4444 455665443 223
Q ss_pred CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE-EEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR-LYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
.++.-....... . ....+..+.+.++ +..++++ .+|.|. -.|- ++. -.......
T Consensus 107 gG~tW~~~~~~~--~-----~~~~~~~i~~~~~-~~~~~~~-~~g~v~~S~Dg--G~t--------------W~~~~~~~ 161 (327)
T 2xbg_A 107 GGQSWSQIPLDP--K-----LPGSPRLIKALGN-GSAEMIT-NVGAIYRTKDS--GKN--------------WQALVQEA 161 (327)
T ss_dssp TTSSCEECCCCT--T-----CSSCEEEEEEEET-TEEEEEE-TTCCEEEESST--TSS--------------EEEEECSC
T ss_pred CCCCceECcccc--C-----CCCCeEEEEEECC-CCEEEEe-CCccEEEEcCC--CCC--------------CEEeecCC
Confidence 333222211100 0 1123566776654 4555555 455443 2221 110 00111122
Q ss_pred ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
...+..+++.|++++++.+..+.++.-+-..+.. ..... ....
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t-----------------------------------W~~~~--~~~~ 204 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA-----------------------------------WEPHN--RTTS 204 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS-----------------------------------CEEEE--CCSS
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc-----------------------------------eeECC--CCCC
Confidence 3467889999999999888777655432110100 00000 1111
Q ss_pred ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
. .+..+.+ +++++.++.+ .+|.+++.+...++.-..+.. +...+.++++.+++.+++++. ++.| .+..+.
T Consensus 205 ~--~~~~~~~-~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg 278 (327)
T 2xbg_A 205 R--RLHNMGF-TPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG 278 (327)
T ss_dssp S--CEEEEEE-CTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST
T ss_pred C--ccceeEE-CCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC
Confidence 1 3677777 8888766544 578877764322443332321 223578899998887776654 6766 344444
Q ss_pred ccccc-cc---cccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 417 ADRAT-LP---TNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 417 ~~~~~-~~---~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
++.-. +. .....+.++.|.+++.++ .++.+|.|.-++
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~~G~i~~~~ 319 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQKGILLRYV 319 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETTEEE-EECSTTEEEEEC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCCceE-EEcCCceEEEEc
Confidence 43222 21 123567888898777655 556788765543
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.42 E-value=0.0023 Score=64.45 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=71.1
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC----CeEEEEEcC-CCcEEEeecc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD----DRSIVTCAA-DGQVRHAQIL 136 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~l~s~~~-dg~i~vw~~~ 136 (458)
..|...+.+. .+++.++ .+.+.++.++.++........-...|.|+++.|..+ +++++.|.. |++++++++.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 4576666543 4555554 578888887765432222123456899999987322 468888886 9999999998
Q ss_pred cccceeeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~ 181 (458)
+.+.+....+.. .....++.+.. .+..+|..|-.||.+.-+.+.
T Consensus 591 ~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 591 SFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 766554444432 12233333321 233567888889987665543
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00043 Score=62.08 Aligned_cols=276 Identities=9% Similarity=0.003 Sum_probs=142.3
Q ss_pred ceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc-ccccceEEEEE-------cCCCCeEEEEecCCC----
Q 012712 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQGRAHKLAI-------EPGSPHVFYTCGEDG---- 173 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~-------~~~~~~~l~s~~~dg---- 173 (458)
....|+|.|..+++++++....+.|++.|..++......... ........++| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456889997212444444444467888888765543321111 12235789999 999954555544432
Q ss_pred --eEEEEeCCC-CCcc-----ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC-------CCcc
Q 012712 174 --LVQHFDLRT-GAAT-----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR-------KYKW 238 (458)
Q Consensus 174 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-------~~~~ 238 (458)
.|.+++... +... ..+. .-.....++++|+++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred CceEEEEecCCCCceeecccceeec-----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 366666433 2222 1111 111356788999767777788888999999997 4432
Q ss_pred CCCccCCCCCCCcCCCc-cccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712 239 DGSTDFGQPADYFCPPN-LIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (458)
-.......+ . .... ...........++|+|+|+.|..+. ...|+.++......... .+ ....+.....
T Consensus 289 ~tp~~~~~~-g--~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~---~~---~~~aG~~g~~ 359 (496)
T 3kya_A 289 WDPIVKNNP-N--TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI---TP---YNFVGGYKQS 359 (496)
T ss_dssp CCCBGGGCT-T--TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC---CC---EEEEEBTTBC
T ss_pred ecccccccc-c--ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec---cc---EEecCCCCCC
Confidence 000000000 0 0000 0111223467899999999544443 34688876543211000 00 0000000000
Q ss_pred CccccCCCCCCcccccCceeecCccceeeee-EEEEec-------CCCcEEEEecCCCeEEEEEecCCeEEEEeecC---
Q 012712 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVK-GVNFFG-------PKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD--- 384 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 384 (458)
+ ..+ .......|. . .. .++. . ++|.++++=..+++|+.++ .+|. +.++.+.
T Consensus 360 G-------~~D--G~~~~a~f~---~---P~~gv~v-d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~ 421 (496)
T 3kya_A 360 G-------YRD--DVGTEARMN---N---PCQGVFV-KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAS 421 (496)
T ss_dssp C-------CBC--CBGGGCBCS---S---EEEEEEE-ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTT
T ss_pred c-------ccC--CcccccccC---C---CeEEEEE-ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccccc
Confidence 0 000 000001111 1 12 2332 4 5667777767788999998 4664 4444322
Q ss_pred ------------C---------ceeeEEEecCC-CCeEEEeecCCcEEEecCCcccc
Q 012712 385 ------------R---------HVVNCIEPHPH-STVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 385 ------------~---------~~v~~~~~s~~-~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
. .....|+++++ |.++++=....+|+.++++....
T Consensus 422 ~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 422 TSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred ccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 0 13678999997 76666666678899998876543
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.0017 Score=57.46 Aligned_cols=204 Identities=12% Similarity=0.043 Sum_probs=119.3
Q ss_pred CCCceEEEEEecCCCEEE-EecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 60 HRGCVNTVSFNTDGDILI-SGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
....+..|+|++.+..|. +-...+.|..+++.... ....+..........+++.+. .+.+.++-...+.|.+.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~-~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEECT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec-CCceEEEECCCCeEEEEeC
Confidence 446688999998655554 44556889999987522 112222223456778888761 4555556666788999888
Q ss_pred ccccceeeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
........ +.........++++|.+..++++-.. .+.|...++........... .......|+++|+
T Consensus 189 ~g~~~~~l--~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~----------~l~~P~glavd~~ 256 (400)
T 3p5b_L 189 KGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----------NIQWPNGITLDLL 256 (400)
T ss_dssp TTCSEEEE--EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS----------SCSCEEEEEEETT
T ss_pred CCCceEEE--EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC----------CCCceEEEEEEeC
Confidence 65433222 22233457899999976566665433 47888888875443222211 1124689999987
Q ss_pred CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
++.+.++-...+.|..+|+...... .+.. ........+++.. +.++++.. .+.|..++..+
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~---------------~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGNRK---------------TILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCCE---------------EEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSS
T ss_pred CCEEEEEECCCCEEEEEeCCCCccE---------------EEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCC
Confidence 6655566566788999998653211 1111 1123345666633 33444443 45788888665
Q ss_pred C
Q 012712 292 G 292 (458)
Q Consensus 292 ~ 292 (458)
+
T Consensus 321 G 321 (400)
T 3p5b_L 321 G 321 (400)
T ss_dssp C
T ss_pred C
Confidence 4
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.00074 Score=60.57 Aligned_cols=256 Identities=12% Similarity=0.065 Sum_probs=136.0
Q ss_pred ceEEEEEcCC-CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE-------CCCCCcEEEEec
Q 012712 152 RAHKLAIEPG-SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI-------DPRNANLFAVAG 223 (458)
Q Consensus 152 ~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~l~~~~ 223 (458)
....|+|+|. +.+++++....+.|++.|+.++........... ....+..++| +++ +..|+++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-------~~~~p~~ia~~~~~~~~d~~-G~~lyvad 211 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-------PTNRIRSIAFNKKIEGYADE-AEYMIVAI 211 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-------SCSBEEEEEECCCBTTTBCT-TCEEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-------ccCCCcEEEEeecccccCCC-CCEEEEEe
Confidence 4678999994 435555555557799999888766544432110 1224789999 998 45455554
Q ss_pred CCC-------eEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec-CCcEEEEEcc---
Q 012712 224 SDE-------YTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQD--- 290 (458)
Q Consensus 224 ~dg-------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~~~~--- 290 (458)
..+ .|.+++... ++.... + ...... .-.....++++|++ .++++.. .+.|+.+|+.
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~-----~-----~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~ 280 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDR-----S-----DIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF 280 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTT-----S-----CEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred CCCCCcccCceEEEEecCCCCceeec-----c-----cceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence 433 256665333 111100 0 000111 12245678899954 4444444 4579999987
Q ss_pred ----CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-ecCCC
Q 012712 291 ----MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCG 365 (458)
Q Consensus 291 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-~~~dg 365 (458)
++....+...... .....+..... .. ....+++ +|+|++|+. -...+
T Consensus 281 ~~~~tg~~~tp~~~~~~------------------------g~~~~l~~~~~-~~--~p~~ia~-~p~G~~lYvaD~~~h 332 (496)
T 3kya_A 281 KTIKNGGSWDPIVKNNP------------------------NTFKQLFTIAD-PS--WEFQIFI-HPTGKYAYFGVINNH 332 (496)
T ss_dssp HHHHTTCCCCCBGGGCT------------------------TTEEEEEECSS-SS--CCEEEEE-CTTSSEEEEEETTTT
T ss_pred ccccCceeecccccccc------------------------cccceeEecCC-CC--CceEEEE-cCCCCEEEEEeCCCC
Confidence 4322111000000 00000011111 11 2467888 999996544 45678
Q ss_pred eEEEEEecC--CeE--EEEeecC---C------------ceee-EEEec-------CCCCeEEEeecCCcEEEecCCccc
Q 012712 366 RIFIWKKKG--GEL--IRVIEAD---R------------HVVN-CIEPH-------PHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 366 ~i~iwd~~~--~~~--~~~~~~~---~------------~~v~-~~~~s-------~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
+|+.++... +.. ..++.+. . .... .++.. +++.++++=....+|+.++.. +.
T Consensus 333 ~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~ 411 (496)
T 3kya_A 333 YFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GI 411 (496)
T ss_dssp EEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CB
T ss_pred EEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CC
Confidence 999977643 322 1223221 0 1234 44554 456666666678899999853 33
Q ss_pred ccccccc------------------------cccEEEEEEecC-CcEEEeeecCCceEEEEE
Q 012712 419 RATLPTN------------------------IEQVCFSIYSAD-YWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 419 ~~~~~~~------------------------~~~v~~~~~s~d-~~~l~s~~~d~~i~~w~~ 455 (458)
..++.+. ......++++++ |.+.++=.....|+.++.
T Consensus 412 v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 412 VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 3322211 123678999997 777666566677887764
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.23 E-value=0.0037 Score=60.14 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=119.1
Q ss_pred CCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEee
Q 012712 60 HRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQ 134 (458)
Q Consensus 60 h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~ 134 (458)
....+..|+|.+.. .++++-...+.|+.+++.... ....+..........|++.+ .+ +++++-...+.|.+.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~--~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee--cCCcEEEEecCCCeEEEEe
Confidence 34567799999854 445555566889999987531 11222232345567888887 55 5556666778999999
Q ss_pred cccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
+........ +.........|++.|.+..++++-... +.|...++........+. . .......|++++
T Consensus 500 ldG~~~~~l--~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~---------~l~~P~GLavD~ 567 (791)
T 3m0c_C 500 TKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-E---------NIQWPNGITLDL 567 (791)
T ss_dssp TTSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-S---------SCSCEEEEEEET
T ss_pred CCCCeEEEE--EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-C---------CCCCceEEEEec
Confidence 865432221 223334578999999864666654333 789888887544332221 1 112578999998
Q ss_pred CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (458)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~ 290 (458)
.++.++++=...+.|..+++...... .+.. ........|++..+ .++++-. .+.|...+..
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~---------------~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRK---------------TILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 631 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCE---------------EEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceE---------------EEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCC
Confidence 75655565566778999998654311 1111 01123446666433 3334433 3468777766
Q ss_pred CCC
Q 012712 291 MGL 293 (458)
Q Consensus 291 ~~~ 293 (458)
++.
T Consensus 632 tG~ 634 (791)
T 3m0c_C 632 TGS 634 (791)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.19 E-value=0.00066 Score=58.85 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=60.0
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEecCC--
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVAGSD-- 225 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~d-- 225 (458)
.....++|.|++ .+++ +..+|.|++++ .++. ..+..... ... .......++++|+ ++.+.++-...
T Consensus 31 ~~P~~ia~~pdG-~l~V-~e~~g~I~~i~--~g~~-~~~~~~~v-~~~---g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 31 EVPWALAFLPDG-GMLI-AERPGRIRLFR--EGRL-STYAELSV-YHR---GESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp SCEEEEEECTTS-CEEE-EETTTEEEEEE--TTEE-EEEEECCC-CCS---TTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CCceEEEEcCCC-eEEE-EeCCCeEEEEE--CCCc-cEeecceE-eec---CCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 346789999999 5544 45669999998 3432 11111110 000 1235789999997 44454444332
Q ss_pred ---CeEEEEecCCCccCCCccCCCCCCCcCCCccc--cccccceeEEEeCCCCcEEEEec
Q 012712 226 ---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 226 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
+.|..++...........+ . ..+. .........++|.|+|.+.++.+
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l------~--~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVV------L--DGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEE------E--EEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCccEEEEEEeCCCCcCceEEE------E--EeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 5688887764321000000 0 0000 01112336899999998777643
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.18 E-value=0.00048 Score=57.67 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=102.8
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc--cccccceeEEEe---CCCCcEEEEec
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAF---SDQSELLVSYN 280 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~~l~~~~ 280 (458)
..++.|++.++.++++.-..+.|..||...+..... .+ .... ......+..+.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~---------~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI---------DGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC---------TTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec---------CCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 457889886555555555899999999875432111 00 0111 111234689999 68888888543
Q ss_pred --------------CCcEEEEEcc---CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712 281 --------------DEFIYLFTQD---MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (458)
Q Consensus 281 --------------~~~i~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+..+..||+. +++.......... ....+...+... .
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~--------------------------~~~~~~~~g~~~-~ 137 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKV--------------------------QDEFEKKAGKRP-F 137 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHH--------------------------HHHHHHHHSSCC-E
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccc--------------------------cccccccccccc-c
Confidence 2358889987 4322111000000 000000001111 1
Q ss_pred eeeEEEEecCCCcEEEEecCC-CeEEEEEecCCeEEEEeecC------CceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 344 TVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVIEAD------RHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
....++. +++|+..++++.. +.|...+.. ++.+..+... .-..+.|+++|+|+.|++....|.|..+|+..
T Consensus 138 ~~nDvav-D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 138 GVVQSAQ-DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEE-CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCceeEE-CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3678888 9999999988888 887777764 3433332211 12367999999999888887799999999884
Q ss_pred c
Q 012712 417 A 417 (458)
Q Consensus 417 ~ 417 (458)
.
T Consensus 216 p 216 (334)
T 2p9w_A 216 P 216 (334)
T ss_dssp S
T ss_pred C
Confidence 3
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.00035 Score=58.53 Aligned_cols=167 Identities=10% Similarity=0.095 Sum_probs=106.8
Q ss_pred CCCceEEEEEecCCCEEEEec-CCCeEEEEECCCcceeeeeccC----C--CcceeEEEE---ccCCCCeEEEEEc----
Q 012712 60 HRGCVNTVSFNTDGDILISGS-DDRRVILWDWKTERVKLSFHSG----H--NDNVFQAKI---MPFTDDRSIVTCA---- 125 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~~~~l~s~~---- 125 (458)
..-.--+++|.+....|..++ ..++|..|+...+........+ . ...+..+.| .| ++.++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~~~~a 88 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMKNAKS 88 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEEETTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEccccc
Confidence 333445788988555555555 7899999998765433222122 1 124679999 58 877777543
Q ss_pred ---------CCCcEEEeecc---cccceeeeeccccc-----------cceEEEEEcCCCCeEEEEecCC-CeEEEEeCC
Q 012712 126 ---------ADGQVRHAQIL---ERGGVETKLLGKHQ-----------GRAHKLAIEPGSPHVFYTCGED-GLVQHFDLR 181 (458)
Q Consensus 126 ---------~dg~i~vw~~~---~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~ 181 (458)
.+..+..+|+. +++.+....+.... .....++..++| +..++++.. +.|...+..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCC
Confidence 25779999998 66665544343222 247899999999 677878877 888777766
Q ss_pred CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
.. ....+........ .....+.|+++|+ ++.|++....|.+..+|++.
T Consensus 168 G~-~~~~~~~~~~~~~----~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGG----QRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SC-CEEEEEECCCCSS----SCCSCSEEEEETT-TTEEEEESSSSSEEEEECSS
T ss_pred CC-EEeeeeecCCCcc----cccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCC
Confidence 44 2222221111000 1224679999998 56666665699999999873
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.11 E-value=0.0065 Score=57.03 Aligned_cols=157 Identities=9% Similarity=0.061 Sum_probs=98.9
Q ss_pred CceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc--CCCcEEEeecccc
Q 012712 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILER 138 (458)
Q Consensus 62 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~ 138 (458)
.....|++.+.+. +.++-...+.|.+.+++.... ..+....-.....+++.| ....|+.+. ..+.|...++...
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp--~~G~lY~tD~g~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDP--AEGFMYWTEWGGKPKIDRAAMDGS 156 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEcc--CCCeEEEeCCCCCCEEEEEeCCCC
Confidence 3566888987655 445555678899999875443 223223345678999998 554555444 2466777776543
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
..... . ........+++++++..++++-...+.|...|+..... ..+.. .......+++.. +.+
T Consensus 157 ~~~~l--~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~----------~l~~P~glav~~--~~l 220 (628)
T 4a0p_A 157 ERTTL--V-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD----------DLPHPFGLTQYQ--DYI 220 (628)
T ss_dssp SCEEE--E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE----------CCSCEEEEEEET--TEE
T ss_pred ceEEE--E-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec----------cCCCceEEEEEC--CEE
Confidence 32221 2 23456788999998757777777788999999976544 23221 111345777765 356
Q ss_pred EEEecCCCeEEEEecCCCc
Q 012712 219 FAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~ 237 (458)
+++-...+.|...|..+++
T Consensus 221 y~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 221 YWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTTTEEEEEETTTCC
T ss_pred EEecCCCCEEEEEECCCCC
Confidence 6666667888888876554
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.08 E-value=5.2e-05 Score=72.24 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=121.9
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC----CCccceeeecccCCCCcceee
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT----GAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~ 203 (458)
..|+..++........ +. ....+..++|++.+..++++-...+.|+.+++.. ......+.. ..
T Consensus 386 ~~I~~id~~~~~~~~~--~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~----------~~ 452 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------DI 452 (699)
T ss_dssp TC-CEECTTSCCEECC--SC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS----------CC
T ss_pred cceEEEeCCCCcceee--ec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC----------CC
Confidence 5677777765443322 22 2345678899987656666656678899999875 121111110 11
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C-
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D- 281 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~- 281 (458)
..+..|++.+.+++++++-...+.|.++++...... .+..........++++|.+.+|.... .
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~---------------~l~~~~~~~P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---------------TLFREQGSKPRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE---------------EECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE---------------EEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence 134578888665666666667788999988654311 11111123457788998655444333 2
Q ss_pred -CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-
Q 012712 282 -EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV- 359 (458)
Q Consensus 282 -~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~- 359 (458)
+.|..+++.... ...+.... ......+++ +|+++.|+
T Consensus 518 ~~~I~~~~~dG~~---------------------------------------~~~l~~~~-l~~PnGlav-d~~~~~LY~ 556 (699)
T 1n7d_A 518 PAKIKKGGLNGVD---------------------------------------IYSLVTEN-IQWPNGITL-DLLSGRLYW 556 (699)
T ss_dssp SCCEEBCCSSSCC---------------------------------------CCEESCSS-CSSCCCEEE-CTTTCCEEE
T ss_pred CCeEEEEeCCCCC---------------------------------------eeEEEeCC-CCCccEEEE-eccCCEEEE
Confidence 356666554311 11111000 012457787 98765555
Q ss_pred EecCCCeEEEEEecCCeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 360 SGSDCGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 360 ~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+-+..+.|..+++.... .+.+.. .......|++..+ .++++....+.|..++..+++..
T Consensus 557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 44556789999985433 333321 1123456666544 45555566788999987766543
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.03 E-value=0.0054 Score=53.08 Aligned_cols=244 Identities=12% Similarity=0.062 Sum_probs=121.4
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEecC---
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVAGS--- 224 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~--- 224 (458)
.....++|.|++ .+ +.+..+|.|+++| ..++ ..+...... .. .......|+++|+ ++.+.++-..
T Consensus 29 ~~P~~ia~~pdG-~l-~V~e~~g~I~~~d-~~G~--~~~~~~~v~-~~---g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 29 EVPWSIAPLGGG-RY-LVTERPGRLVLIS-PSGK--KLVASFDVA-NV---GEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp SCEEEEEEEETT-EE-EEEETTTEEEEEC-SSCE--EEEEECCCC-CS---TTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCCeEEEEcCCC-eE-EEEeCCCEEEEEe-CCCc--eEeecccee-ec---CCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 346789999998 55 4455669999997 3443 222111100 00 1234789999996 4555444332
Q ss_pred C----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--------------cEEE
Q 012712 225 D----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--------------FIYL 286 (458)
Q Consensus 225 d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------------~i~i 286 (458)
+ ..|..|+....... . ...... ...+..........++|.|||.+.++.++. .|..
T Consensus 100 ~~~~~~~v~r~~~~~~~~~--~--~~~~~l--~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFK--L--KEVKTL--IDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp GGCEEEEEEEEEECSSSCC--E--EEEEEE--EEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred CCCcceEEEEEEECCCCcC--c--CccEEE--EEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 3 56777776543100 0 000000 000111111234679999999877765432 2222
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCC
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCG 365 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg 365 (458)
++.+.. .. . +++- ........++.+ ...++| +| +|+++++-...+
T Consensus 174 i~~dG~--~p-----------------~----------~npf-~~~~i~a~G~rn---p~Gla~-d~~~g~l~v~d~g~~ 219 (354)
T 3a9g_A 174 VDEEGR--PP-----------------A----------DNPF-PNSPIWSYGHRN---PQGIDW-HRASGVMVATEHGPV 219 (354)
T ss_dssp ECTTSC--CC-----------------T----------TSSS-TTCCEEEECCSC---CCEEEE-CTTTCCEEEEECCSS
T ss_pred EcCCCC--CC-----------------C----------CCCC-CCCcEEEEccCC---cceEEE-eCCCCCEEEEecCCC
Confidence 222110 00 0 0000 001111234554 467888 99 666555422211
Q ss_pred ---eEEEEEecCCe------------------EEEEeecCCceeeEEEec-------CCCCeEEEeecCCcEEEecCCcc
Q 012712 366 ---RIFIWKKKGGE------------------LIRVIEADRHVVNCIEPH-------PHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 366 ---~i~iwd~~~~~------------------~~~~~~~~~~~v~~~~~s-------~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
.|.+. ..+. ++..+......+..++|. .+|.++++.-..+.|...+++..
T Consensus 220 ~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 220 GHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp SCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred CCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 23332 2221 223331112346778883 46777776666778888887753
Q ss_pred -cc---cccc-cccccEEEEEEecCCcEEEeee
Q 012712 418 -DR---ATLP-TNIEQVCFSIYSADYWWSKSQN 445 (458)
Q Consensus 418 -~~---~~~~-~~~~~v~~~~~s~d~~~l~s~~ 445 (458)
+. ..+. ....++..+++.|||.+.++..
T Consensus 298 g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 298 MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 22 1222 2345799999999997665543
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.99 E-value=0.0063 Score=52.70 Aligned_cols=258 Identities=13% Similarity=0.082 Sum_probs=125.2
Q ss_pred cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee---ccccccceEEEEEcCC---CCeEEEEecCC-----C
Q 012712 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL---LGKHQGRAHKLAIEPG---SPHVFYTCGED-----G 173 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~l~s~~~d-----g 173 (458)
.....++|.| +++++++ ..+|.|.+++ .++...... ..........++++|+ +..++++-... +
T Consensus 31 ~~P~~ia~~p--dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLP--DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECT--TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcC--CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3467999999 9985555 4568999888 332211111 1122356789999998 43555554433 6
Q ss_pred eEEEEeCCCCCcc---ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-------------CCeEEEEecCCCc
Q 012712 174 LVQHFDLRTGAAT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDIRKYK 237 (458)
Q Consensus 174 ~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~ 237 (458)
.|..++...+... ..+...+...... + ....++|.|+ +.+.++.+. .|.|.-++... +
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~--h--~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~ 179 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGL--H--SGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRLTPEG-E 179 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCC--C--CCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-S
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCC--c--CCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEEcCCC-C
Confidence 7888887654221 1111111000111 1 2368999998 455554332 24566666542 1
Q ss_pred cCCCccCCCCCCC---cCCCccccccccceeEEEeCC-CCcEEEEecC-CcE------EEEEccCCCCC-CCCCCCCccc
Q 012712 238 WDGSTDFGQPADY---FCPPNLIGDEQVGITGLAFSD-QSELLVSYND-EFI------YLFTQDMGLGP-NPPPSSPVST 305 (458)
Q Consensus 238 ~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-~~i------~i~~~~~~~~~-~~~~~~~~~~ 305 (458)
... ..|... ........+ ......++|+| +|+++++-.. +.+ .+.-+..+... .+....
T Consensus 180 ~p~----~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g---- 250 (352)
T 2ism_A 180 PAP----GNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVG---- 250 (352)
T ss_dssp BCT----TCTTTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCS----
T ss_pred CCC----CCcccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccC----
Confidence 100 000000 001111111 23467889999 6776665442 221 12222222100 000000
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE------EE
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL------IR 379 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~ 379 (458)
+. .......+...+..+.. ...++| .+|+++++.-..+.|...+++.... ..
T Consensus 251 ---------~~--------~~~~~~~p~~~~~~~~a---p~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~ 308 (352)
T 2ism_A 251 ---------RG--------NDPRYRDPLYFWPQGFP---PGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE 308 (352)
T ss_dssp ---------CC--------CCTTSCCCSEECTTCCC---EEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred ---------CC--------CCCCCcCCeEecCCCCC---CcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchh
Confidence 00 00000122233333333 456666 3677777666678888888764321 12
Q ss_pred EeecCCceeeEEEecCCCCeEEEee
Q 012712 380 VIEADRHVVNCIEPHPHSTVLASSG 404 (458)
Q Consensus 380 ~~~~~~~~v~~~~~s~~~~~l~s~~ 404 (458)
.+-.....+..+++.|||.++++..
T Consensus 309 ~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 309 TALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEESSCCEEEEEECTTSCEEEEEC
T ss_pred eecccCCCeeEEEECCCCcEEEEEe
Confidence 2222235688999999998776653
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.98 E-value=0.0019 Score=54.72 Aligned_cols=188 Identities=11% Similarity=0.186 Sum_probs=110.7
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC----Ce---EEEE-EcC--CCcEEEeeccc-ccce
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD----DR---SIVT-CAA--DGQVRHAQILE-RGGV 141 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~---~l~s-~~~--dg~i~vw~~~~-~~~~ 141 (458)
..+++.....+-+.+||+ +|+.+..+ .. +.++.+..-| + ++ ++++ .-. +++|++|++.. ...+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~--~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRY--DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEE--EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEec--ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 355666666788999999 78887776 22 4566666655 3 22 2233 333 57899997742 2222
Q ss_pred eeeeccc------cc-cceEEEEE--cCC-CCeEEEEecCCCeEEEEeCC---CC----CccceeeecccCCCCcceeec
Q 012712 142 ETKLLGK------HQ-GRAHKLAI--EPG-SPHVFYTCGEDGLVQHFDLR---TG----AATELFTCRPIDDRRNYMTVV 204 (458)
Q Consensus 142 ~~~~~~~------~~-~~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~ 204 (458)
.. +.. .. ..+..+++ +|. +..+++....+|.+..|++. .+ +.+..+.. ..
T Consensus 114 ~~--i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----------gs 180 (355)
T 3amr_A 114 QS--MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----------NS 180 (355)
T ss_dssp EE--CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----------SS
T ss_pred ee--ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----------CC
Confidence 22 211 11 45666777 774 43467788888999999883 22 23333332 23
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc--ccccccceeEEEe--CCCCc-EEEEe
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL--IGDEQVGITGLAF--SDQSE-LLVSY 279 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~--~~~~~-~l~~~ 279 (458)
.+..+...+. ...|+.+-++..|..++.+...-... ..... ...-...+..|++ .++++ +|+++
T Consensus 181 q~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~----------~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 181 QTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNG----------TVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp CEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSCC----------EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred CcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCCc----------eEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence 5778888886 56888888887777777553210000 00001 1112236778887 45555 55555
Q ss_pred c--CCcEEEEEcc
Q 012712 280 N--DEFIYLFTQD 290 (458)
Q Consensus 280 ~--~~~i~i~~~~ 290 (458)
+ ++...+||..
T Consensus 250 sQG~~s~~Vydr~ 262 (355)
T 3amr_A 250 SQGNSSYAIYDRQ 262 (355)
T ss_dssp EGGGTEEEEEESS
T ss_pred cCCCCEEEEEECC
Confidence 5 4479999986
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.96 E-value=0.0056 Score=50.89 Aligned_cols=271 Identities=11% Similarity=0.136 Sum_probs=158.4
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
.+..|.|-|+.++..+.+....-. +.-.+| ..+.||.-. ...+.++|+++...+....+. .+|.-=.|-.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP--~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis 116 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS 116 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCS----EEEECS--SSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECS
T ss_pred CCCEEEEEECCCCCCccccccccc----eeeeCC--CccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecC
Confidence 345789999988766544322222 334588 777777665 578999999998777664443 4565566665
Q ss_pred CCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-------CCCeEEEEe
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------SDEYTRLYD 232 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~i~d 232 (458)
+. .|+-.+ +..|+-|++... .+.+.+..+... ....|..-..+++ .++++..+ -.|.+.+|.
T Consensus 117 ~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L------~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS 186 (365)
T 2xzh_A 117 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYS 186 (365)
T ss_dssp SS--EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG------TTCEEEEEEECTT-SCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CC--eEEEEc-CCcEEEEcccCCCCCceeeecchhc------ccceEEEEEECCC-CCEEEEEeEeccCCccceeEEEEe
Confidence 54 333333 357999999753 444445433221 2346777788887 45555433 236788898
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC---CcEEEEecC----CcEEEEEccCC-CCCCCCCCCCcc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYND----EFIYLFTQDMG-LGPNPPPSSPVS 304 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~----~~i~i~~~~~~-~~~~~~~~~~~~ 304 (458)
.+... .....+|......+....+ ..+++.+.. +++.+.++... .....+.
T Consensus 187 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~----- 245 (365)
T 2xzh_A 187 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 245 (365)
T ss_dssp TTTTE----------------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-----
T ss_pred ecccc----------------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-----
Confidence 87653 2334444443333332221 124444432 36888888553 1111111
Q ss_pred ccccccccCCCCccccCCCCCCcccccCceeecCc-cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (458)
.+....+... .....-.++.. ++.-..++.-+.-|.|++||++++.++..-+-
T Consensus 246 -------------------------kk~vdi~fppea~~DFPVamqv-s~kygviyviTK~G~ihlyDleTgt~i~~nrI 299 (365)
T 2xzh_A 246 -------------------------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 299 (365)
T ss_dssp -------------------------CEEEEECCCTTCTTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -------------------------cccceeeCCccccCCceEEEEe-cccCCEEEEEeCCcEEEEEEcccCcEEEEecc
Confidence 0111111111 11112456666 77777888888999999999999999988776
Q ss_pred CCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
....|..-+-+....=++.....|.|.--.++...
T Consensus 300 S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 300 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 66666655554444445555567776666555543
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.93 E-value=0.0032 Score=53.34 Aligned_cols=191 Identities=14% Similarity=0.202 Sum_probs=110.8
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC----CC---E-EEEec
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GD---I-LISGS 80 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~---~-l~s~~ 80 (458)
...++++...++-+.++|+ +|+.+.. +.. +.++.+..-|+ |+ + +++.-
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---------------------~~~--g~~nnVD~r~~~~l~g~~~dla~as~R 94 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS---------------------YNT--GKLNNVDIRYDFPLNGKKVDIAAASNR 94 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE---------------------ECC--SCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE---------------------ccC--CCcccEEEecccccCCceEeEEEEeCC
Confidence 4455666677888999999 5887743 332 45666665552 22 2 33333
Q ss_pred C--CCeEEEEECC--Ccceeeeecc---C--CC-cceeEEEE--ccCCCC-eEEEEEcCCCcEEEeecccc-------cc
Q 012712 81 D--DRRVILWDWK--TERVKLSFHS---G--HN-DNVFQAKI--MPFTDD-RSIVTCAADGQVRHAQILER-------GG 140 (458)
Q Consensus 81 ~--d~~i~iwd~~--~~~~~~~~~~---~--~~-~~i~~~~~--~~~~~~-~~l~s~~~dg~i~vw~~~~~-------~~ 140 (458)
. +++|.+|+++ ++. +..+-. . .. ..++.+|+ +|. .+ -+++....+|.+..|++... +.
T Consensus 95 ~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~-~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~l 172 (355)
T 3amr_A 95 SEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQK-TGKYYAMVTGKEGEFEQYELKADKNGYISGKK 172 (355)
T ss_dssp STTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCC-CCcEEEEEECCCCeEEEEEEEeCCCCcccceE
Confidence 4 5789999773 333 333311 0 11 56777887 662 23 36778888999999998432 22
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC--ccceeeecccCCCCcceeecceEEEEE--CCCCC
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNA 216 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~ 216 (458)
+.. +. ....+..+...+.. ..|+.+-++.-|..++.+... ....+....... -...+..|++ .+++.
T Consensus 173 VR~--f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-----l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 173 VRA--FK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-----LTRDIEGLTIYYAADGK 243 (355)
T ss_dssp EEE--EE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-----BCSCEEEEEEEECGGGC
T ss_pred EEE--ec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-----cccCcceEEEEecCCCC
Confidence 222 22 23578888898877 467888888777777755221 111221111100 1124667777 44432
Q ss_pred -cEEEEecCCCeEEEEecC
Q 012712 217 -NLFAVAGSDEYTRLYDIR 234 (458)
Q Consensus 217 -~~l~~~~~dg~i~i~d~~ 234 (458)
.+|+++-.+....+||..
T Consensus 244 gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 244 GYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEEGGGTEEEEEESS
T ss_pred EEEEEEcCCCCEEEEEECC
Confidence 344444467799999986
No 307
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.89 E-value=0.0089 Score=51.05 Aligned_cols=256 Identities=18% Similarity=0.139 Sum_probs=124.9
Q ss_pred ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEe--cC
Q 012712 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVA--GS 224 (458)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~--~~ 224 (458)
-.....|+|.|++ .++++--..|.|++++...++............ ........|+++|+ ++.+.++- ..
T Consensus 31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~----~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSP----SGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCC----BTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceee----cCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3456889999999 566665558999999876555322211111100 02335789999995 34333321 23
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--------------cEEEEEcc
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--------------FIYLFTQD 290 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------------~i~i~~~~ 290 (458)
++.|.-|.......... .+..+...+ ..+..........|+|.|||.+.++.++. .|.-++.+
T Consensus 106 ~~~v~R~~~~~~~~~~~-~~~~~~~i~--~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGE-QLGAPDTVF--RGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SEEEEEEEBCTTSCTTC-CBCCCEEEE--EEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCEEEEEEeCCCCcccc-cCCCcEEEE--EcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 45566666554221000 000000000 00111112234679999999877775432 12222211
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFI 369 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~i 369 (458)
. ... .+++- .....--.++.+ ...++| +|+|++.++= +.++.=.|
T Consensus 183 G-------------------------~ip----~~nPf-~~~~i~a~G~RN---p~Gla~-dp~G~L~~~d~g~~~~del 228 (347)
T 3das_A 183 G-------------------------EPA----PGNPF-PGSPVYSYGHRN---VQGLAW-DDKQRLFASEFGQDTWDEL 228 (347)
T ss_dssp S-------------------------SBC----TTCSS-TTCCEEEBCCSB---CCEEEE-CTTCCEEEEECCSSSCEEE
T ss_pred C-------------------------Ccc----CCCCC-CCCeEEeeCCCC---cceEEE-CCCCCEEEEecCCCCCcee
Confidence 1 000 00000 001112236665 467888 9988766542 22332223
Q ss_pred EEecCCe------------------EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc----c-cccccc
Q 012712 370 WKKKGGE------------------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR----A-TLPTNI 426 (458)
Q Consensus 370 wd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~----~-~~~~~~ 426 (458)
--+..+. ++..+..+......|+|. +|.+++..-..+.|....++.... . .+....
T Consensus 229 n~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~ 307 (347)
T 3das_A 229 NAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEY 307 (347)
T ss_dssp EEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTS
T ss_pred eEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCC
Confidence 2222221 122232222345677776 455565555556666556554321 1 233345
Q ss_pred ccEEEEEEecCCcEEE-eeecCC
Q 012712 427 EQVCFSIYSADYWWSK-SQNFSC 448 (458)
Q Consensus 427 ~~v~~~~~s~d~~~l~-s~~~d~ 448 (458)
.++..++..|||.+.+ +...||
T Consensus 308 gR~~dv~~~pDG~lyv~td~~~g 330 (347)
T 3das_A 308 GRLRTVAPAGGDKLWLVTSNTDG 330 (347)
T ss_dssp SCEEEEEEEETTEEEEEECTTSS
T ss_pred CCccEEEECCCCcEEEEEcCCCC
Confidence 6899999999996554 444444
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.81 E-value=0.014 Score=50.60 Aligned_cols=274 Identities=13% Similarity=0.130 Sum_probs=128.1
Q ss_pred ceeEEEEccCCCCe-EEEEEcCCCcEEEeecccccc--eee--eeccccccceEEEEEcCC---CCeEEEEecC------
Q 012712 106 NVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGG--VET--KLLGKHQGRAHKLAIEPG---SPHVFYTCGE------ 171 (458)
Q Consensus 106 ~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~--~~~--~~~~~~~~~v~~~~~~~~---~~~~l~s~~~------ 171 (458)
....|+|.| +++ ++++ ...|.|++++...... +.. ............++++|+ +..+.++-..
T Consensus 19 ~P~~i~~~p--dG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLP--DNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECS--TTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcC--CCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 467899999 998 5554 4578999887432111 110 001112345689999996 4355555333
Q ss_pred -CCeEEEEeCCCCC--c--cce-eeecccCCCCcceeecceEEEEECCCCCcEEEEecC-------------CCeEEEEe
Q 012712 172 -DGLVQHFDLRTGA--A--TEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYD 232 (458)
Q Consensus 172 -dg~i~iwd~~~~~--~--~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d 232 (458)
...|..+++.... . .+. +...+...... | ....++|.|+ +.+.++.+. .|.|.-++
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~--h--~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGN--H--FGGRLVFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSS--C--CCCCEEECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCc--c--cCccEEECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 2356666665331 1 111 11111000011 1 2357999998 555554332 24666666
Q ss_pred cCCCccCCCccCCCCCCCc--CCCccccccccceeEEEeCC-CCcEEEEecCC--cEEEEEccCCCCCCCCCCCCccccc
Q 012712 233 IRKYKWDGSTDFGQPADYF--CPPNLIGDEQVGITGLAFSD-QSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRS 307 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~ 307 (458)
.... ... ..|.... ....+..........++|+| +|+++++-... .=.|.-+..+... -.+ .....
T Consensus 171 ~dG~-~p~----~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny-Gwp---~~~~~ 241 (353)
T 2g8s_A 171 DQGE-IPD----DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY-GWP---LATWG 241 (353)
T ss_dssp TTSC-CCT----TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC-CTT---TBCSS
T ss_pred CCCC-CCC----CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC-CCC---CccCC
Confidence 5432 100 0010000 00111111123578899999 67766654321 1122222222110 000 00000
Q ss_pred cccccCCCCccccCC-CCCCcccccCceeecCccceeeeeEEEEec------CCCcEEEEecCCCeEEEEEecCCeEEEE
Q 012712 308 EASEMGSDHTSAASP-STANTDVRIAPQVYKGHRNCVTVKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (458)
Q Consensus 308 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s------~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 380 (458)
..+. +..+... .........+...+..|.. ...++|+. .+|+++++.-..+.|...++..++.+..
T Consensus 242 --~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~a---p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~ 314 (353)
T 2g8s_A 242 --INYS--GFKIPEAKGEIVAGTEQPVFYWKDSPA---VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTED 314 (353)
T ss_dssp --BCTT--SSCCTTCCBSSCTTSCCCSEEESSCCC---EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred --CCCC--CCccCcccCCCCCCccCCeEEeCCCcC---cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeee
Confidence 0000 0000000 0000000122333333433 56677632 2578888777788999999887655433
Q ss_pred --e-ecCCceeeEEEecCCCCeEEEe
Q 012712 381 --I-EADRHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 381 --~-~~~~~~v~~~~~s~~~~~l~s~ 403 (458)
+ ......+..+++.|||.++++.
T Consensus 315 ~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 315 GRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred EEcccCCCCceeEEEECCCCcEEEEE
Confidence 2 1223468899999999876653
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.69 E-value=0.005 Score=53.34 Aligned_cols=105 Identities=12% Similarity=0.063 Sum_probs=72.5
Q ss_pred eeEEEEecCCCcEEEEecCCCeEEEEEecCCe------------EEEEeec------CCceeeEEEecCCC---CeEEEe
Q 012712 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE------------LIRVIEA------DRHVVNCIEPHPHS---TVLASS 403 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~------~~~~v~~~~~s~~~---~~l~s~ 403 (458)
+..+.. +|+|++||..+ +..|.|..+..+. ..+.+.- ...+|..+.|+|-+ ..|++-
T Consensus 68 i~qlvl-SpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 68 TFHVIS-STSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TCEEEE-CTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred eeEEEE-CCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 566776 99999999886 5689999887331 1223332 24679999999964 579999
Q ss_pred ecCCcEEEecCCcccc--ccc---------ccccccEEEEEEecCCcEE--EeeecCCceE
Q 012712 404 GIESDIKILTPNAADR--ATL---------PTNIEQVCFSIYSADYWWS--KSQNFSCSIL 451 (458)
Q Consensus 404 ~~d~~i~iw~~~~~~~--~~~---------~~~~~~v~~~~~s~d~~~l--~s~~~d~~i~ 451 (458)
..|+.|++||+..... ..+ ......|.+++|++++-.| ++.+..|.|+
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 9999999999986321 111 1112458999999998444 4455777665
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.67 E-value=0.02 Score=48.34 Aligned_cols=232 Identities=13% Similarity=0.110 Sum_probs=114.2
Q ss_pred CCeEEEEEc-CC-----CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCC-
Q 012712 117 DDRSIVTCA-AD-----GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGA- 184 (458)
Q Consensus 117 ~~~~l~s~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~- 184 (458)
++..++.|+ .+ ..+.++|..+.+......+.........+. .++ .+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHD-RIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECC-EEEEEcCCCCCccCceEEEEECCCCCC
Confidence 556666666 32 367888887765433221221111112222 234 677777765 468899998876
Q ss_pred --ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 185 --ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
-...-..+. .. .....+.+ + +.+++.|+.+ ..+.+||..+.+......+ .
T Consensus 91 ~~W~~~~~~p~--~r------~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~------------p 147 (301)
T 2vpj_A 91 GVWYSVAPMNV--RR------GLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM------------Q 147 (301)
T ss_dssp CCCEEECCCSS--CC------BSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC------------S
T ss_pred CeeEECCCCCC--Cc------cceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCC------------C
Confidence 322211110 01 11122222 2 5677777654 3588999887664322111 0
Q ss_pred cccccceeEEEeCCCCcEEEEec-C-----CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712 258 GDEQVGITGLAFSDQSELLVSYN-D-----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (458)
. ....-..+.+ ++++++.|+ + +.+..||+.+..-.
T Consensus 148 ~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~------------------------------------ 188 (301)
T 2vpj_A 148 T-AREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT------------------------------------ 188 (301)
T ss_dssp S-CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE------------------------------------
T ss_pred C-CcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE------------------------------------
Confidence 0 0111112222 566666665 2 24888887653210
Q ss_pred CceeecCccceeeeeEEEEecCCCcEEEEecCC-----CeEEEEEecCCeEEEE--eecCCceeeEEEecCCCCeEEEee
Q 012712 332 APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKGGELIRV--IEADRHVVNCIEPHPHSTVLASSG 404 (458)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~ 404 (458)
.+..+..... -.+++. .++++++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+
T Consensus 189 ~~~~~p~~r~---~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 261 (301)
T 2vpj_A 189 NVTPMATKRS---GAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAG 261 (301)
T ss_dssp EECCCSSCCB---SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eCCCCCcccc---cceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcC
Confidence 0000110111 112222 267777787764 4689999977654322 1111111122222 677777777
Q ss_pred cC-----CcEEEecCCccccc
Q 012712 405 IE-----SDIKILTPNAADRA 420 (458)
Q Consensus 405 ~d-----~~i~iw~~~~~~~~ 420 (458)
.+ ..+.+||+++.+..
T Consensus 262 ~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 262 YDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp BCSSSBEEEEEEEETTTTEEE
T ss_pred cCCCcccccEEEEcCCCCeEE
Confidence 65 35777887765443
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.65 E-value=0.019 Score=47.82 Aligned_cols=250 Identities=12% Similarity=0.075 Sum_probs=148.4
Q ss_pred CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
+..|.+.|+.++..+.++... ..+.-.+|.. ++++.-. ...+.++|+++.+.++.+... ..|
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~-----AdsAIMnP~~-~ViALra-g~~LQiFnletK~klks~~~~-----------e~V 109 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMT-----------DDV 109 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC-----CSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEECS-----------SCE
T ss_pred CCEEEEEECCCCCCccccccc-----cceeeeCCCc-cEEEEec-CCeEEEechHHhhhhcceecC-----------Ccc
Confidence 347888899887766544343 2345568987 5555544 678999999999887777632 256
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec----C-
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----D- 281 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~- 281 (458)
.--.|-.+ +.|+..+. ..|+-|++.... .|...+.....+. ...|..-..+++.++++..+ +
T Consensus 110 vfWkWis~--~~L~lVT~-taVyHWs~~~~s--------~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~ 176 (365)
T 2xzh_A 110 TFWKWISL--NTVALVTD-NAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQN 176 (365)
T ss_dssp EEEEECSS--SEEEEEES-SEEEEEESSTTC--------CCEEEEECCGGGT--TCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEecCC--CeEEEEcC-CcEEEEcccCCC--------CCceeeecchhcc--cceEEEEEECCCCCEEEEEeEeccCC
Confidence 66677654 45554443 469999987532 1222222222222 46788888899999876543 2
Q ss_pred ---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC---
Q 012712 282 ---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--- 355 (458)
Q Consensus 282 ---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~--- 355 (458)
|.+.+|..+. ...+.+.+|... ...+ -.+|
T Consensus 177 ~v~G~mQLYS~er---------------------------------------~~sQ~ieGhaa~--F~~~---~~~g~~~ 212 (365)
T 2xzh_A 177 RVVGAMQLYSVDR---------------------------------------KVSQPIEGHAAS--FAQF---KMEGNAE 212 (365)
T ss_dssp EEEEEEEEEETTT---------------------------------------TEEEEECCSEEE--EEEE---CCTTCSS
T ss_pred ccceeEEEEeecc---------------------------------------cccceeeeeeee--eEEE---ecCCCCC
Confidence 3478888764 345666676653 1111 2222
Q ss_pred --cEEEEecC---CCeEEEEEecCC---e------EEEEee---cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 356 --EYVVSGSD---CGRIFIWKKKGG---E------LIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 356 --~~l~~~~~---dg~i~iwd~~~~---~------~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
+.++.+.. .++++|.++... . .+..+- ...+-..++..|+....+..-..-|.|++||++++.
T Consensus 213 ~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 213 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 23332222 268899888432 1 111111 123446688888888888888899999999999998
Q ss_pred cccccc-ccccEEEEEEecCCcEEEeeecCCceE
Q 012712 419 RATLPT-NIEQVCFSIYSADYWWSKSQNFSCSIL 451 (458)
Q Consensus 419 ~~~~~~-~~~~v~~~~~s~d~~~l~s~~~d~~i~ 451 (458)
++.... ..+.|...+...+..=++.....|.|.
T Consensus 293 ~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 293 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred EEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 764332 233344444444433333445556543
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.57 E-value=0.033 Score=48.45 Aligned_cols=271 Identities=11% Similarity=0.125 Sum_probs=160.0
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
.+..|.|-|+.++..+.+....- -+.-.+| ..+.||.-. ...+.++|+++...+....+. .+|.-=.|-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP--~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCC----SEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceeccccc----ceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC
Confidence 34589999998876654432222 2445678 777777665 578999999988776664432 3455555655
Q ss_pred CCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-------CCCeEEEEe
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------SDEYTRLYD 232 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~i~d 232 (458)
+. .|+..+ +..|+-|++... .+.+.+..+... ....|..-..+++ .++++..+ -.|.+.+|.
T Consensus 116 ~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp TT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------TTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CC--eEEEEc-CCeeEEecccCCCCchhheecchhc------ccceEEEEEECCC-CCeEEEEeecccCCcccceEEEee
Confidence 44 333333 457999999753 344455433221 2346777888887 45655433 246788998
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC---cEEEEecC----CcEEEEEccCCC-CCCCCCCCCcc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVS 304 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~----~~i~i~~~~~~~-~~~~~~~~~~~ 304 (458)
.+... .....+|......+....+. .+++.+.. +++.+.++.... ....+.
T Consensus 186 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~----- 244 (494)
T 1bpo_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 244 (494)
T ss_dssp STTCC----------------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-----
T ss_pred ccccc----------------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-----
Confidence 87653 33445555444444433221 24444432 468888886531 111111
Q ss_pred ccccccccCCCCccccCCCCCCcccccCceeecCc-cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (458)
.+....+... .....-.++.. ++.-..++.-+.-|.|++||++++.++..-+-
T Consensus 245 -------------------------kk~vdv~fppe~~~DFPvamqv-s~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 245 -------------------------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp -------------------------CEEEECCCCTTSTTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -------------------------ceeeeeeCCcccccCceeEEEe-cccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 0001111111 01112356666 78778888889999999999999999987776
Q ss_pred CCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
....|..-+-+....=++.....|.|.--.++...
T Consensus 299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 66677665555554455555677776666555443
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.54 E-value=0.033 Score=47.77 Aligned_cols=177 Identities=12% Similarity=0.054 Sum_probs=95.1
Q ss_pred CCCcEEEEEccccccccccccccccccccceEEeeeeeE-eecCCCceEEEEEec--CCC-EEEEe-cC--CCeEEEEEC
Q 012712 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAK-LDKHRGCVNTVSFNT--DGD-ILISG-SD--DRRVILWDW 90 (458)
Q Consensus 18 ~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~--~~~-~l~s~-~~--d~~i~iwd~ 90 (458)
.+|.|.++|.++..... .++..... +.........+.+.+ ++. +|..+ .. +.+|.+|++
T Consensus 81 ~~G~I~~~d~~~~~~~~--------------~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~ 146 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV--------------SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKF 146 (355)
T ss_dssp -CCEEEEEETTSSSCCE--------------EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEE
T ss_pred CCCeEEEEecCCCCCce--------------EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEE
Confidence 68999999987322110 11111110 111234556677655 453 34333 22 568888887
Q ss_pred CCccee----eeeccCCCcceeEEEEccCCCCeEEEEEcC-----------------CCcEEEeecccccceeeeecccc
Q 012712 91 KTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----------------DGQVRHAQILERGGVETKLLGKH 149 (458)
Q Consensus 91 ~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----------------dg~i~vw~~~~~~~~~~~~~~~~ 149 (458)
+.+... ..+....-...+.+.+.+ +|.+.++... .|.|..++. ++ ... +...
T Consensus 147 d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~--~~~~ 219 (355)
T 3sre_A 147 QEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRV--VAEG 219 (355)
T ss_dssp ETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEE--EEEE
T ss_pred ECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEE--eecC
Confidence 654322 222112234578999999 9988777541 233444443 32 211 2223
Q ss_pred ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
-...+.++|+|+++.++++-+..+.|..|++............. .......+++.++++++.+++.
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--------~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--------FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--------CSSEEEEEEECTTTCCEEEEEE
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--------CCCCCceEEEeCCCCcEEEEec
Confidence 34578999999997677777778999999987432221111111 1224567778773145554443
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.54 E-value=0.03 Score=47.19 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=79.1
Q ss_pred CCCEEEEec-CC-----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-----CcEEEeeccccc-
Q 012712 72 DGDILISGS-DD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERG- 139 (458)
Q Consensus 72 ~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~- 139 (458)
++.+++.|+ .+ ..+.+||..+.+-...- ..........+... ++..++.|+.+ ..+.+||..+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-SITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-CCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666666 32 36888998776532211 11111111112223 67788888765 468899988776
Q ss_pred --ceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 140 --GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 140 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
......+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-..+ .... ...++.+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~------~~~~~~~- 158 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TARE------GAGLVVA- 158 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCCB------SCEEEEE-
T ss_pred CeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCcc------cceEEEE-
Confidence 3332222221122222222 44 677777754 36888998876543322111 0111 1122222
Q ss_pred CCCCcEEEEecCC-----CeEEEEecCCCccC
Q 012712 213 PRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (458)
Q Consensus 213 p~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 239 (458)
+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 159 -~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 159 -S-GVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp -T-TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred -C-CEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 2 5677777754 45889998887653
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.50 E-value=0.034 Score=46.87 Aligned_cols=66 Identities=8% Similarity=0.127 Sum_probs=39.1
Q ss_pred CCcEEEEecCC-----CeEEEEEecCCeEEEE--eecCCceeeEEEecCCCCeEEEeecCC-----cEEEecCCcccccc
Q 012712 354 KCEYVVSGSDC-----GRIFIWKKKGGELIRV--IEADRHVVNCIEPHPHSTVLASSGIES-----DIKILTPNAADRAT 421 (458)
Q Consensus 354 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iw~~~~~~~~~ 421 (458)
++++++.|+.+ ..+.+||..+.+-... +.........+. -++++++.|+.++ .+.+||+.+.+...
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 67788888764 4688999877643322 111111111222 2677888887653 48889888765443
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.48 E-value=0.043 Score=47.46 Aligned_cols=254 Identities=11% Similarity=0.051 Sum_probs=126.2
Q ss_pred cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec---cccccceEEEEEcCC---CCeEEEEecC---C---
Q 012712 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPG---SPHVFYTCGE---D--- 172 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~s~~~---d--- 172 (458)
.....++|.| +++++++ ..+|.|++++. +++ .....+ .........|+++|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~p--dG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLG--GGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEE--TTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcC--CCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 4567899999 9985555 45589998873 333 111111 112346789999997 4355554432 3
Q ss_pred -CeEEEEeCCCCC--c--cc-eeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-------------CCeEEEEec
Q 012712 173 -GLVQHFDLRTGA--A--TE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDI 233 (458)
Q Consensus 173 -g~i~iwd~~~~~--~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~ 233 (458)
..|..|+..... . .+ .+...+ .... | ....++|.|+ +.++++.+. .|.|.-++.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~--~~~~--h--~~~~l~~~pD-G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYI--H--NGGRIRFGPD-GMLYITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEE--CCSS--C--CCCCEEECTT-SCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCC--CCCC--c--CCceEEECCC-CcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence 567778766441 1 11 111111 1111 1 2467999998 455555332 245555554
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecCC----cEEEEEccCCCC-CCCCCCCCccccc
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDE----FIYLFTQDMGLG-PNPPPSSPVSTRS 307 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~----~i~i~~~~~~~~-~~~~~~~~~~~~~ 307 (458)
... ... ..|. ....+..........++|+| +|+++++-... .|.+.. .+.. -.+.......
T Consensus 177 dG~-~p~----~npf---~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~--- 243 (354)
T 3a9g_A 177 EGR-PPA----DNPF---PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAG--- 243 (354)
T ss_dssp TSC-CCT----TSSS---TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCC---
T ss_pred CCC-CCC----CCCC---CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCC---
Confidence 321 100 0010 00111111123457899999 67766664422 244332 2110 0000000000
Q ss_pred cccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEe------cCCCcEEEEecCCCeEEEEEecCC-eEE-
Q 012712 308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFF------GPKCEYVVSGSDCGRIFIWKKKGG-ELI- 378 (458)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~------s~~~~~l~~~~~dg~i~iwd~~~~-~~~- 378 (458)
......+...+ ..+.. ...++|+ ..+|+++++.-..+.|...++... +..
T Consensus 244 ------------------~~~~~~p~~~~~~~~~a---p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~ 302 (354)
T 3a9g_A 244 ------------------RGEFVDPVIDTGSETWA---PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK 302 (354)
T ss_dssp ------------------CTTSCCCSEECTTCCCC---EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE
T ss_pred ------------------CCCCcCCEeecCCCCcC---CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc
Confidence 00001122222 22222 4566662 146777777777788999988753 332
Q ss_pred -EEee-cCCceeeEEEecCCCCeEEEee
Q 012712 379 -RVIE-ADRHVVNCIEPHPHSTVLASSG 404 (458)
Q Consensus 379 -~~~~-~~~~~v~~~~~s~~~~~l~s~~ 404 (458)
..+. +....+..+++.|||.++++..
T Consensus 303 ~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 303 ISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 2332 2235688999999998766653
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.42 E-value=0.044 Score=46.31 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred CeEEEEEcC--CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC----CeEEEEeCCCCCccceeee
Q 012712 118 DRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 118 ~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~ 191 (458)
+.+++.|+. ...+.+||..+.+......+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 445566664 35688888877654332222221122222222 44 677788755 5788899887754332211
Q ss_pred cccCCCCcceeecceEEEEECCCCCcEEEEecCC------CeEEEEecCCCccC
Q 012712 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKWD 239 (458)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~ 239 (458)
+. ... ....+.+ + +.+++.|+.+ ..+.+||..+.+..
T Consensus 89 p~--~r~------~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 89 PT--PRD------SLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp SS--CCB------SCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred Cc--ccc------ceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 10 111 1122223 2 5677777765 45889999887643
No 318
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.42 E-value=0.043 Score=46.12 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=51.1
Q ss_pred cCCCcEEEEecC-CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC--CcEEEecCCccccccccccccc
Q 012712 352 GPKCEYVVSGSD-CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE--SDIKILTPNAADRATLPTNIEQ 428 (458)
Q Consensus 352 s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~ 428 (458)
+++++.|+-.+. ..+|++.++..+.....+.+ ... ..++|++.+|+-...+ ..|..-++++.....+....
T Consensus 153 ~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~-- 226 (302)
T 3s25_A 153 NTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN-- 226 (302)
T ss_dssp EEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC--
T ss_pred eEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC--
Confidence 677888775554 57788888766654433332 222 2356888888766543 35666667666655554322
Q ss_pred EEEEEEecCCcEEEee
Q 012712 429 VCFSIYSADYWWSKSQ 444 (458)
Q Consensus 429 v~~~~~s~d~~~l~s~ 444 (458)
+ ..|+|++.+|..+
T Consensus 227 ~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 227 I--EHYNVYGSLIFYQ 240 (302)
T ss_dssp E--EEEEEETTEEEEE
T ss_pred c--ceEEECCCEEEEE
Confidence 2 3377777777654
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.40 E-value=0.02 Score=48.69 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=54.2
Q ss_pred eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC-----C------CeEEEEeCCCCCccc
Q 012712 119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-----D------GLVQHFDLRTGAATE 187 (458)
Q Consensus 119 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~ 187 (458)
.+++.|+ ..+..||..+++... ..+..............++ .+++.|+. . ..+..||..+.+-..
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 3455565 568899988776533 2222211222222333455 67777773 1 127788888765422
Q ss_pred eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--------CeEEEEecCCCccC
Q 012712 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIRKYKWD 239 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~ 239 (458)
.-..+ . .......+.+ ++.+++.|+.+ ..+.+||..+.+..
T Consensus 82 ~~~~p---~-----~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~ 130 (315)
T 4asc_A 82 MPPLP---S-----PRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130 (315)
T ss_dssp CCCBS---S-----CEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE
T ss_pred CCCCC---c-----chhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe
Confidence 21111 0 0001122222 25677777742 45889999887643
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.38 E-value=0.055 Score=46.44 Aligned_cols=189 Identities=12% Similarity=0.122 Sum_probs=104.9
Q ss_pred eEEEEEecCCCEEEEec------------CCCeEEEEECCCc--ce-eeeeccC-----CCcceeEEEEccCCCCe-EEE
Q 012712 64 VNTVSFNTDGDILISGS------------DDRRVILWDWKTE--RV-KLSFHSG-----HNDNVFQAKIMPFTDDR-SIV 122 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~--~~-~~~~~~~-----~~~~i~~~~~~~~~~~~-~l~ 122 (458)
.-.+...|+|..+++++ .+|.|.++|.++. +. ...+ .+ ..-....+.+.+..++. +|+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566788886655552 6899999998743 22 1112 12 12356667765511232 344
Q ss_pred EE-cC--CCcEEEeecccccceee--eeccc-cccceEEEEEcCCCCeEEEEec-----------------CCCeEEEEe
Q 012712 123 TC-AA--DGQVRHAQILERGGVET--KLLGK-HQGRAHKLAIEPGSPHVFYTCG-----------------EDGLVQHFD 179 (458)
Q Consensus 123 s~-~~--dg~i~vw~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd 179 (458)
.+ .. +..|.+|++........ ..+.+ .-...+.+.+.++| .+.++.. ..|.|..+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 43 22 56788888765433221 11222 12457899999998 5555543 124555555
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (458)
. ++...... .-...+.++|+||+..+.++-+..+.|+.|++........ .... .
T Consensus 210 ~--~~~~~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~------------~~~~-~ 263 (355)
T 3sre_A 210 P--NDVRVVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP------------LRVL-S 263 (355)
T ss_dssp T--TCCEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE------------EEEE-E
T ss_pred C--CeEEEeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec------------CEEE-e
Confidence 4 22221111 2234689999998544555556778999999864211100 0111 1
Q ss_pred cccceeEEEeCC-CCcEEEEec
Q 012712 260 EQVGITGLAFSD-QSELLVSYN 280 (458)
Q Consensus 260 ~~~~i~~~~~~~-~~~~l~~~~ 280 (458)
..+..-.+++.+ +|.+.+++.
T Consensus 264 ~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp CSSEEEEEEECTTTCCEEEEEE
T ss_pred CCCCCceEEEeCCCCcEEEEec
Confidence 134567888998 588877665
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.36 E-value=0.063 Score=46.72 Aligned_cols=250 Identities=12% Similarity=0.070 Sum_probs=149.5
Q ss_pred CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
...|.+-|+.++..+.++... ..+.-.+|.. ++++.-. ...+.++|+++.+.++.+... ..|
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~~-----------e~V 108 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMT-----------DDV 108 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-----CSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEECS-----------SCC
T ss_pred CCeEEEEECCCCCcceecccc-----cceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceecC-----------CCc
Confidence 447888999887766544343 3356678887 5555443 689999999999887776642 245
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec----C-
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----D- 281 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~- 281 (458)
.--.|-.+ +.|+..+ +..|+-|++.... .|...+....... ...|..-..+++.++++..+ +
T Consensus 109 vfWkWis~--~~l~lVT-~taVyHWsi~~~s--------~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~ 175 (494)
T 1bpo_A 109 TFWKWISL--NTVALVT-DNAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQN 175 (494)
T ss_dssp CEEEEEET--TEEEEEC-SSEEEEEESSSSC--------CCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred eEEEecCC--CeEEEEc-CCeeEEecccCCC--------Cchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCC
Confidence 55556543 4555544 3479999996532 1222222222222 46788888899999877433 2
Q ss_pred ---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC---
Q 012712 282 ---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--- 355 (458)
Q Consensus 282 ---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~--- 355 (458)
|.+.+|..+. ...+.+.||... ...+. .+|
T Consensus 176 ~v~G~mQLYS~er---------------------------------------~~sQ~ieGhaa~--F~~~~---~~g~~~ 211 (494)
T 1bpo_A 176 RVVGAMQLYSVDR---------------------------------------KVSQPIEGHAAS--FAQFK---MEGNAE 211 (494)
T ss_dssp EEEEEEEEEESTT---------------------------------------CCEEEECCSEEE--EEEEE---CTTCSS
T ss_pred cccceEEEeeccc---------------------------------------cccchheeeeee--eEEEe---cCCCCC
Confidence 3478888764 345666777653 22222 122
Q ss_pred --cEEEEecC---CCeEEEEEecCC--------eEEEEee----cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 356 --EYVVSGSD---CGRIFIWKKKGG--------ELIRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 356 --~~l~~~~~---dg~i~iwd~~~~--------~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
+.++.+.. .++++|.++... +....+. .-.+-..++..|+....+..-..-|.|.+||++++.
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 23333322 378999998432 1111111 123446688889888888888899999999999997
Q ss_pred cccccc-ccccEEEEEEecCCcEEEeeecCCceE
Q 012712 419 RATLPT-NIEQVCFSIYSADYWWSKSQNFSCSIL 451 (458)
Q Consensus 419 ~~~~~~-~~~~v~~~~~s~d~~~l~s~~~d~~i~ 451 (458)
++.... ..+.|...+......=++.....|.|.
T Consensus 292 ~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 292 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred eeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 764332 223344444444443344445666543
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.32 E-value=0.012 Score=45.93 Aligned_cols=147 Identities=14% Similarity=0.017 Sum_probs=81.8
Q ss_pred cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712 262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (458)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
..+..++|+|+|.+.+. .++.++-.+..+.....- ... .+..+...
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W--------------------------------~~s-~t~IG~~G 86 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNW--------------------------------MGR-AKKIGNGG 86 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCH--------------------------------HHH-CEEEECSC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccc--------------------------------ccc-ccEecccc
Confidence 36779999999998777 777666555432110000 000 01111111
Q ss_pred eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE------EEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI------RVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
.....++.| +|+|.+.++ .||.|+-++-.+...- ..+ ..-=..+..|.+.|+|.+.+.. |+.++-+..
T Consensus 87 w~~F~a~~f-D~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~ 161 (236)
T 1tl2_A 87 WNQFQFLFF-DPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALP 161 (236)
T ss_dssp GGGCSEEEE-CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECC
T ss_pred cccceEEEE-CCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCC
Confidence 111356666 999988887 5699988875331110 111 1111457899999999988776 777644443
Q ss_pred Ccccc------ccc-c-cccccEEEEEEecCCcEEEeeecCCc
Q 012712 415 NAADR------ATL-P-TNIEQVCFSIYSADYWWSKSQNFSCS 449 (458)
Q Consensus 415 ~~~~~------~~~-~-~~~~~v~~~~~s~d~~~l~s~~~d~~ 449 (458)
..+.. .+. . ..-..-+-+.|+|+|.+.+.. ++.
T Consensus 162 P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 162 PVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp CSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred CCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence 32211 111 1 222235567799999777664 663
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.30 E-value=0.058 Score=46.87 Aligned_cols=158 Identities=9% Similarity=0.074 Sum_probs=96.1
Q ss_pred EecCCCEEEEecCCCeEEEEECCCcceeeeeccCC---CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-----
Q 012712 69 FNTDGDILISGSDDRRVILWDWKTERVKLSFHSGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG----- 140 (458)
Q Consensus 69 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~----- 140 (458)
.+.+|..++.+- ++.||.-++.....-+.+...+ -..|..+..+| +|++||..+. ..|.|-.+..+..
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp--sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST--SGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT--TSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC--CCCEEEEecC-CeEEEEEecCccccCccc
Confidence 345666666554 3678887876443322221221 23688899999 9999999875 5788888763321
Q ss_pred -----ee--eeeccc----cccceEEEEEcCCCC--eEEEEecCCCeEEEEeCCCCCccceeeecccCC-CCcceeecce
Q 012712 141 -----VE--TKLLGK----HQGRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYMTVVNL 206 (458)
Q Consensus 141 -----~~--~~~~~~----~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~v 206 (458)
+. ...+.. ...+|..+.|+|-+. ..|++-..|+.|++||+........ ....... .........+
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 11 111211 246799999999763 3688889999999999986432222 1111100 0000122568
Q ss_pred EEEEECCCCCcEEEEec--CCCeEEEEe
Q 012712 207 NAIAIDPRNANLFAVAG--SDEYTRLYD 232 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~--~dg~i~i~d 232 (458)
.+++|.++ +-.|+..+ .+|.|+-.-
T Consensus 183 ~S~~Fg~~-~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 183 TDLEFSKD-GLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECTT-SSCEEEEECTTSCEEEEES
T ss_pred EEEEEcCC-CcEEEEEecCCCCCEEEEC
Confidence 89999995 66666644 778776543
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.28 E-value=0.064 Score=45.19 Aligned_cols=149 Identities=13% Similarity=0.187 Sum_probs=75.4
Q ss_pred CCEEEEecCC----CeEEEEECCCcceeeeeccCCCcce-eEEEEccCCCCeEEEEEcCC-----CcEEEeeccccccee
Q 012712 73 GDILISGSDD----RRVILWDWKTERVKLSFHSGHNDNV-FQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGVE 142 (458)
Q Consensus 73 ~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~~~~ 142 (458)
+.+++.|+.+ ..+..||+.+.+-...- ....... .+++. - ++..++.|+.+ ..+.+||..+.+...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVA-ELPSRRCRAGMVY-M--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEE-E--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcc-cCCcccccceEEE-E--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 3455555543 35788888776532211 1111111 12222 2 67788888754 357888887765433
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCC-----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (458)
...+.........+.+ ++ .+++.|+.++ .+.+||+.+.+-...-..+ ... ....++.+ ++.
T Consensus 92 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~---~~~ 157 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN--TRR------SSVGVGVV---GGL 157 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS--SCC------BSCEEEEE---TTE
T ss_pred CCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC--Ccc------cCceEEEE---CCE
Confidence 2222221122222222 44 6777777553 5778888776543321111 001 01122222 256
Q ss_pred EEEEecCC-------CeEEEEecCCCccC
Q 012712 218 LFAVAGSD-------EYTRLYDIRKYKWD 239 (458)
Q Consensus 218 ~l~~~~~d-------g~i~i~d~~~~~~~ 239 (458)
+++.|+.+ ..+.+||+.+.+..
T Consensus 158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 158 LYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp EEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred EEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 77777643 35889999877643
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.27 E-value=0.027 Score=43.99 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=64.5
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
..+..++|+|++ .+ ++. .+|.++-.+..+.....-+..... -+...-....++.|.|+ +.+.++ .||.|+-
T Consensus 41 ~~~~~laf~P~G-~L-YaV-~~G~Ly~~~~~t~~~~~W~~s~t~---IG~~Gw~~F~a~~fD~~-G~LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGG-EL-YGV-LNDKIYKGTPPTHDNDNWMGRAKK---IGNGGWNQFQFLFFDPN-GYLYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTS-CE-EEE-ETTEEEEESCCCSTTCCHHHHCEE---EECSCGGGCSEEEECTT-SCEEEE--ETTEEEE
T ss_pred ccceeEEECCCc-cE-EEE-eCCeEEEECCCCCCcccccccccE---ecccccccceEEEECCC-CCEEEe--CCCEEEE
Confidence 367799999988 44 444 778777766554332211110000 00001112478999997 556655 6699987
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEE
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~ 285 (458)
++..+.....-.. ....+-...-..+..|.+.|+|.+.+.. ++.++
T Consensus 112 ~~pP~~~~~~Wl~--------~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 112 ASPPQSDTDNWIA--------RATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp ESCCCSTTCCHHH--------HSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred eCCCcCCCCceec--------cccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 7764422110000 0000111122568999999999988888 77754
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.23 E-value=0.074 Score=44.95 Aligned_cols=150 Identities=10% Similarity=0.081 Sum_probs=79.0
Q ss_pred CCCEEEEecC----C-----CeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC-----CcEEEeecc
Q 012712 72 DGDILISGSD----D-----RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQIL 136 (458)
Q Consensus 72 ~~~~l~s~~~----d-----~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~ 136 (458)
++.+++.|+. + ..+.+||..+.+-...-. ...... .+++. - ++.+++.|+.+ ..+.+||..
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-IGVGV-I--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-CEEEE-E--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-cEEEE-E--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5667777775 2 357888987765322110 111111 12222 2 67778877753 357888887
Q ss_pred cccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
+.+......+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-..+ . ......++.+
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~-----~r~~~~~~~~ 214 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---T-----IRSGAGVCVL 214 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---S-----CCBSCEEEEE
T ss_pred CCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---C-----ccccceEEEE
Confidence 7654332222211122222233 44 677777764 45889998776533221111 0 0011122333
Q ss_pred CCCCCcEEEEecCC-----CeEEEEecCCCccC
Q 012712 212 DPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (458)
Q Consensus 212 ~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 239 (458)
+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 215 --~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 215 --H-NCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp --T-TEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred --C-CEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 2 5677778764 46899999887654
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.13 E-value=0.21 Score=48.36 Aligned_cols=320 Identities=10% Similarity=0.020 Sum_probs=165.0
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
..|.++.. .+|. |..++.+ -+..+|..+++...... ......|.++...+ ++.+.+ +..+ -+..++..+.
T Consensus 103 ~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWi-gt~~-Gl~~~~~~~~ 175 (758)
T 3ott_A 103 TDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK--DNQIYV-GTYN-GLCRYIPSNG 175 (758)
T ss_dssp SCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT--TCCEEE-EETT-EEEEEETTTT
T ss_pred ceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC--CCCEEE-EeCC-CHhhCccCCC
Confidence 35777654 3554 5555555 58888987655422100 11234688888776 666555 4444 4667776554
Q ss_pred cceeeeeccc----cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712 139 GGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 139 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
.... ..... ....|.++...+++ ..|..++. +-+..+|..+++....... ....|.++...++
T Consensus 176 ~~~~-~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l----------~~~~i~~i~~d~~ 242 (758)
T 3ott_A 176 KFEG-IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAF----------HNNSIKSLALDGN 242 (758)
T ss_dssp EEEE-ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEE----------EEEEEEEEEECTT
T ss_pred ceEE-ecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCC----------CCCeEEEEEEcCC
Confidence 3221 11111 12347888887766 33444544 4588888776543221111 2235788888776
Q ss_pred CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~ 294 (458)
+ .|..|+.+ -+.+++..+.+....... ......-....|.++....+|.+.+.... .+.++.....
T Consensus 243 -g-~lWigT~~-Gl~~~~~~~~~~~~~~~~--------~~~~~~l~~~~i~~i~~D~~g~lWiGT~~-Gl~~~~~~~~-- 308 (758)
T 3ott_A 243 -G-DLLAGTDN-GLYVYHNDTTPLQHIIHD--------SRNIQSLTNNIIWNIFADQEHNIWLGTDY-GISLSRYNSA-- 308 (758)
T ss_dssp -C-CEEEEETT-EEEEECCTTSCCEEECCC--------TTCTTSCSCSCEEEEEECTTCCEEEEESS-SEEEECCCC---
T ss_pred -C-CEEEEeCC-ceeEEecCCCcEEEEEcC--------CCCcCcCCcCeEEEEEEcCCCCEEEEeCC-cccccccCCc--
Confidence 3 44445544 588888766542110000 00000112346889988888876665544 4554432110
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
... ..............|.++.. +.+|.+.+. +.+| +..++..+
T Consensus 309 ~~~---------------------------------~~~~~~~~~~~~~~v~~i~~-D~~g~lWiG-t~~G-l~~~~~~~ 352 (758)
T 3ott_A 309 LQF---------------------------------IPISQITGTGDGNQFYSLFR-DSKGFYWFG-GANG-LIRFTDPA 352 (758)
T ss_dssp CEE---------------------------------EEHHHHSCSCCCCBEEEEEE-CTTCCEEEE-ETTE-EEEESCTT
T ss_pred eeE---------------------------------EecccCCCCCCCceEEEEEE-cCCCCEEEe-eCCc-ceeecccc
Confidence 000 00000000011113777776 777775553 4444 66666544
Q ss_pred Ce--EEEEeec-------CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc--c-----ccccEEEEEEecCC
Q 012712 375 GE--LIRVIEA-------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP--T-----NIEQVCFSIYSADY 438 (458)
Q Consensus 375 ~~--~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~-----~~~~v~~~~~s~d~ 438 (458)
++ ....+.. ....|.++.-.++|++.+ |. ++-|..|+..+++..... . ....|.++...++|
T Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g 430 (758)
T 3ott_A 353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG 430 (758)
T ss_dssp SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS
T ss_pred cccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC
Confidence 31 1222221 123588888888887655 33 457888998776544321 1 12348888888888
Q ss_pred cEEEeeecCCceEEEE
Q 012712 439 WWSKSQNFSCSILLFE 454 (458)
Q Consensus 439 ~~l~s~~~d~~i~~w~ 454 (458)
.+-+ |+..+-|.+++
T Consensus 431 ~lWi-gT~~~Gl~~~~ 445 (758)
T 3ott_A 431 QLWI-STCLGGIFVVD 445 (758)
T ss_dssp EEEE-EESSSCEEEEE
T ss_pred CEEE-EECCCceEEEc
Confidence 5433 34444465554
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.10 E-value=0.1 Score=44.04 Aligned_cols=148 Identities=9% Similarity=0.046 Sum_probs=76.9
Q ss_pred CEEEEecC--CCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeecccccceeeeec
Q 012712 74 DILISGSD--DRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLL 146 (458)
Q Consensus 74 ~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~ 146 (458)
.+++.|+. ...+.+||..+++-...-. ...... .+++. - ++..++.|+.+ ..+.++|..+.+......+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AACVF-W--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEEEE-E--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEEEE-E--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 34555554 3568889988765322110 111111 12222 2 67788888754 5678888877654333222
Q ss_pred cccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 147 GKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-..+ .... ...++.+ + +.+++
T Consensus 89 p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~------~~~~~~~--~-~~iyv 154 (306)
T 3ii7_A 89 PTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQRC------SHGMVEA--N-GLIYV 154 (306)
T ss_dssp SSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCCB------SCEEEEE--T-TEEEE
T ss_pred CccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCcc------eeEEEEE--C-CEEEE
Confidence 221122222222 44 677777765 45889998877543221111 0111 1122222 2 46777
Q ss_pred EecC---------CCeEEEEecCCCccC
Q 012712 221 VAGS---------DEYTRLYDIRKYKWD 239 (458)
Q Consensus 221 ~~~~---------dg~i~i~d~~~~~~~ 239 (458)
.|+. -..+.+||+.+.+..
T Consensus 155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~ 182 (306)
T 3ii7_A 155 CGGSLGNNVSGRVLNSCEVYDPATETWT 182 (306)
T ss_dssp ECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred ECCCCCCCCcccccceEEEeCCCCCeEE
Confidence 7763 345889999887643
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.09 E-value=0.11 Score=44.37 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=65.2
Q ss_pred EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eee---ccCCCcceeEEEEccCCC----CeEEEEE--
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSF---HSGHNDNVFQAKIMPFTD----DRSIVTC-- 124 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~---~~~~~~~i~~~~~~~~~~----~~~l~s~-- 124 (458)
.+...-..-..|+|.|||.++++--..|.|++++..+++.. ..+ ..........|+++| + +.+.++-
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~ 103 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTS 103 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEEC
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEec
Confidence 34434456789999999998887665899999986655432 111 122345688999998 6 4343432
Q ss_pred cCCCcEEEeeccccc----c---eee--eecc-ccccceEEEEEcCCCCeEEEEec
Q 012712 125 AADGQVRHAQILERG----G---VET--KLLG-KHQGRAHKLAIEPGSPHVFYTCG 170 (458)
Q Consensus 125 ~~dg~i~vw~~~~~~----~---~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~ 170 (458)
..++.|.-|.+.... . ... ..+. ........|.|.|++ .++++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence 234455556554411 0 110 0111 112234679999999 6666654
No 330
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.05 E-value=0.26 Score=47.80 Aligned_cols=329 Identities=9% Similarity=0.020 Sum_probs=170.7
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 141 (458)
..|.++...+++..|..|.. +-+..+|..+++... +.......|.++...+ ++.+.+. ..+ -+.+++..+....
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d~--~g~lWig-T~~-Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALDG--NGDLLAG-TDN-GLYVYHNDTTPLQ 264 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEECT--TCCEEEE-ETT-EEEEECCTTSCCE
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEcC--CCCEEEE-eCC-ceeEEecCCCcEE
Confidence 34888888877765555554 458888877665322 2111234588888776 6665544 444 4777876554322
Q ss_pred eeeec-----cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 142 ETKLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 142 ~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
..... .-....|.++....++ . |-.|+..| +.++... . ....+...... .......|.++.-..++
T Consensus 265 ~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~---~~~~~~~v~~i~~D~~g- 335 (758)
T 3ott_A 265 HIIHDSRNIQSLTNNIIWNIFADQEH-N-IWLGTDYG-ISLSRYN-S-ALQFIPISQIT---GTGDGNQFYSLFRDSKG- 335 (758)
T ss_dssp EECCCTTCTTSCSCSCEEEEEECTTC-C-EEEEESSS-EEEECCC-C--CEEEEHHHHS---CSCCCCBEEEEEECTTC-
T ss_pred EEEcCCCCcCcCCcCeEEEEEEcCCC-C-EEEEeCCc-ccccccC-C-ceeEEecccCC---CCCCCceEEEEEEcCCC-
Confidence 11000 0123458888888877 3 44555556 5444321 1 11111111000 00022357888877763
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~ 296 (458)
.|..|+.+| +..++..+++......+... .....-....|.++.-.++|.+.+.. ++.+..|+..++...
T Consensus 336 -~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~- 405 (758)
T 3ott_A 336 -FYWFGGANG-LIRFTDPAGERHDAIWYRMG------DKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFI- 405 (758)
T ss_dssp -CEEEEETTE-EEEESCTTSSCCCCEEECTT------CSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-
T ss_pred -CEEEeeCCc-ceeecccccccceeEEeccC------CcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEE-
Confidence 444555554 66676654321100000000 00000113468888888888876654 568999997653110
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCcccccCceeec--CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
...... .......|.++.. +++|++.+ |+..+-+.++|..+
T Consensus 406 -----------------------------------~~~~~~~~~~~~~~~v~~i~~-d~~g~lWi-gT~~~Gl~~~~~~~ 448 (758)
T 3ott_A 406 -----------------------------------HYNIVDNTGTYNTNWTYYIFE-DTAGQLWI-STCLGGIFVVDKHK 448 (758)
T ss_dssp -----------------------------------EEEEECCC--CBSSSEEEEEE-CTTSEEEE-EESSSCEEEEEHHH
T ss_pred -----------------------------------EeecCCCcCCCCCceEEEEEE-cCCCCEEE-EECCCceEEEcccc
Confidence 000000 0001113677776 77776444 55555688888653
Q ss_pred C-----eEE---EEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc----ccccEEEEEEecCC
Q 012712 375 G-----ELI---RVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT----NIEQVCFSIYSADY 438 (458)
Q Consensus 375 ~-----~~~---~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~v~~~~~s~d~ 438 (458)
. ... ..+.. ....|.++...++|.+.+.++..+-|..++..+++...+.. ....+.++....+|
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g 528 (758)
T 3ott_A 449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG 528 (758)
T ss_dssp HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS
T ss_pred ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC
Confidence 1 111 12211 12358889988899877633334557888887765443321 12357888888888
Q ss_pred cEEEeeecCCceEEEE
Q 012712 439 WWSKSQNFSCSILLFE 454 (458)
Q Consensus 439 ~~l~s~~~d~~i~~w~ 454 (458)
.+-+. +..| +..|+
T Consensus 529 ~lWig-t~~G-l~~~~ 542 (758)
T 3ott_A 529 LLWVG-FHGG-VMRIN 542 (758)
T ss_dssp CEEEE-ETTE-EEEEC
T ss_pred CEEEE-ecCc-eEEEe
Confidence 44432 2344 55544
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.04 E-value=0.12 Score=43.83 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=95.5
Q ss_pred eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-----C----
Q 012712 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-----D---- 82 (458)
Q Consensus 12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d---- 82 (458)
+++.|+ ..+.+||..+++.... .+..............++.+++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~--------------------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 64 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCA--------------------SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDP 64 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEE--------------------ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSC
T ss_pred EEEEcC--CceEEECCCCCeEecC--------------------CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccc
Confidence 344555 5688999997765311 11111112222233357777777773 1
Q ss_pred --CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC--------CcEEEeecccccceeeeeccccccc
Q 012712 83 --RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------GQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 83 --~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--------g~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
..+.+||..+++-...-.......-.+++.. ++..++.|+.+ ..+.+||..+.+......+......
T Consensus 65 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 65 MSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEEEETTTTEEEECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cccceEEecCCCCeEEECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 1377888877653221100111111122222 67777777742 4588888877654332222211111
Q ss_pred eEEEEEcCCCCeEEEEecC-C-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712 153 AHKLAIEPGSPHVFYTCGE-D-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (458)
. +++. -++ .+++.|+. + ..+.+||+.+.+-...-..+. .. ....++.+ + +.+++.|+.++
T Consensus 142 ~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r------~~~~~~~~--~-~~iyv~GG~~~ 207 (315)
T 4asc_A 142 H-TVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT--AR------SLFGATVH--D-GRIIVAAGVTD 207 (315)
T ss_dssp C-EEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS--CC------BSCEEEEE--T-TEEEEEEEECS
T ss_pred e-eEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC--ch------hceEEEEE--C-CEEEEEeccCC
Confidence 1 2222 234 67777776 2 468899988764332211110 00 01122223 2 56777777654
Q ss_pred -----eEEEEecCCCccC
Q 012712 227 -----YTRLYDIRKYKWD 239 (458)
Q Consensus 227 -----~i~i~d~~~~~~~ 239 (458)
.+.+||+.+.+..
T Consensus 208 ~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 208 TGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp SSEEEEEEEEETTTTEEE
T ss_pred CCccceEEEEECCCCeEE
Confidence 5889999887653
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.98 E-value=0.21 Score=50.61 Aligned_cols=269 Identities=12% Similarity=0.133 Sum_probs=143.5
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
....|.|-|+.++..+.+.... --+.-.+| ..+.||.-. ..++.++|+.+...+....+ ..+|.-=.|-.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~----AdsAIMnP--~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis 115 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 115 (1630)
T ss_pred CCceEEEEECCCCCCccccccc----chhhccCC--CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecC
Confidence 3347888998887654332112 22344677 667776655 57899999988777655333 23455555655
Q ss_pred CCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-------CCCeEEEEe
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------SDEYTRLYD 232 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~i~d 232 (458)
.. .|+..+ +..|+.|++... .+.+.+..+... ....|..-..+++ .++++..| -.|.+.+|.
T Consensus 116 ~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L------~~~QIinY~~d~~-~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred CC--eeEEEc-CCeEEEeccCCCCccHHHHhcchhc------ccCeeEEeeeCCC-CCeEEEEeeccCCCcccceeeeee
Confidence 44 233333 357999999743 333344322111 2345777777887 45555432 347888888
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC---CCCcEEEEec----CCcEEEEEccCC-CCCCCCCCCCcc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---DQSELLVSYN----DEFIYLFTQDMG-LGPNPPPSSPVS 304 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~----~~~i~i~~~~~~-~~~~~~~~~~~~ 304 (458)
..... .....+|.+....+... +...+++.+. .+++.+.++... ....++.
T Consensus 186 ~er~~----------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~----- 244 (1630)
T 1xi4_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 244 (1630)
T ss_pred ccccc----------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc-----
Confidence 87653 22233333333222222 1122333332 247888888653 1111111
Q ss_pred ccccccccCCCCccccCCCCCCcccccCceeecCc-cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (458)
.+....+... .......++.. ++.-..++..+.-|.|++||+.++.++..-+-
T Consensus 245 -------------------------kk~~~~~~~~~~~~Dfpv~~~v-s~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 245 -------------------------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred -------------------------cccccccCCcccccCcceEEEe-ccccCEEEEEecCceEEEEecccchhhhhccc
Confidence 0001111111 00112345555 77777888888999999999999988865554
Q ss_pred CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
...+|...+-++...=++.....|.|.--.+..
T Consensus 299 s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 444554444443322333334555554444443
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.97 E-value=0.14 Score=43.44 Aligned_cols=147 Identities=13% Similarity=0.157 Sum_probs=72.5
Q ss_pred EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----CC-------cEEEeecccccceee
Q 012712 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DG-------QVRHAQILERGGVET 143 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg-------~i~vw~~~~~~~~~~ 143 (458)
+++.|+. .+..||..+++-...-............... ++..++.|+. ++ .+..+|..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444543 4788998877643321111111222222334 7778888873 12 166778766654332
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCC-------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-..+. ... ...++. . ++
T Consensus 94 ~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------~~~~~~-~--~~ 159 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVY------GHNVIS-H--NG 159 (318)
T ss_dssp SCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEE------SCEEEE-E--TT
T ss_pred CCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--ccc------ccEEEE-E--CC
Confidence 212211111222222 34 677777754 357888888765432211110 000 112222 2 25
Q ss_pred cEEEEecC------CCeEEEEecCCCccC
Q 012712 217 NLFAVAGS------DEYTRLYDIRKYKWD 239 (458)
Q Consensus 217 ~~l~~~~~------dg~i~i~d~~~~~~~ 239 (458)
.+++.|+. -..+.+||+.+.+..
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 67777764 235899999887653
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.90 E-value=0.14 Score=51.89 Aligned_cols=205 Identities=12% Similarity=0.116 Sum_probs=121.9
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
|++.-+|..+.+|.-. ..+++|+|+++.+.++. +. ...+|.-=.|-.+. .|+-.+.
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks---------------------~~-~~e~VvfWkWis~~-~l~lVT~ 124 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA---------------------HT-MTDDVTFWKWISLN-TVALVTD 124 (1630)
T ss_pred hhhccCCCcceEEEec-CCeEEEeehHHhhhhcc---------------------cc-cCCCceEEEecCCC-eeEEEcC
Confidence 5667788888888776 77899999987766643 11 23567666776444 3444433
Q ss_pred CCeEEEEECCCcc-eeeeeccCC----CcceeEEEEccCCCCeEEEEEc-------CCCcEEEeecccccceeeeecccc
Q 012712 82 DRRVILWDWKTER-VKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA-------ADGQVRHAQILERGGVETKLLGKH 149 (458)
Q Consensus 82 d~~i~iwd~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~l~s~~-------~dg~i~vw~~~~~~~~~~~~~~~~ 149 (458)
..|.-|++.... +...+ ..| ...|..-..++ +.++++..| -.|.+.+|.++.+.. +.+.+|
T Consensus 125 -~aVyHW~~~~~s~P~k~f-dR~~~L~~~QIinY~~d~--~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s---Q~iegh 197 (1630)
T 1xi4_A 125 -NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDA--KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGH 197 (1630)
T ss_pred -CeEEEeccCCCCccHHHH-hcchhcccCeeEEeeeCC--CCCeEEEEeeccCCCcccceeeeeecccccc---hhhhHh
Confidence 469999997533 32223 333 35676777777 888877543 248889998865433 236777
Q ss_pred ccceEEEEEc--CCCCeEEEEecC---CCeEEEEeCCCC-Cccceeeec--ccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 150 QGRAHKLAIE--PGSPHVFYTCGE---DGLVQHFDLRTG-AATELFTCR--PIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 150 ~~~v~~~~~~--~~~~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
.+....+... +....++..+.. .+.+++.++... .....+... ........ ...-..++..++. -..+..
T Consensus 198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~-~~Dfpv~~~vs~k-~g~iy~ 275 (1630)
T 1xi4_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA-QNDFPVAMQISEK-HDVVFL 275 (1630)
T ss_pred HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc-ccCcceEEEeccc-cCEEEE
Confidence 7665544443 222233332222 378999988543 111111100 00000001 1223457788887 457778
Q ss_pred ecCCCeEEEEecCCCccC
Q 012712 222 AGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~ 239 (458)
-+.-|.+++||+.++...
T Consensus 276 itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EecCceEEEEecccchhh
Confidence 889999999999998754
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.88 E-value=0.16 Score=42.79 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=95.0
Q ss_pred CCCEEEEecCC----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----C-----CcEEEeecccc
Q 012712 72 DGDILISGSDD----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----D-----GQVRHAQILER 138 (458)
Q Consensus 72 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----d-----g~i~vw~~~~~ 138 (458)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++. . ++.+++.|+. + ..+.++|..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 56677777632 368899987765322110011111112222 2 6777777775 2 46788888776
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
+......+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-..+. ... ...++.+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------~~~~~~~-- 167 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--RRI------GVGVAVL-- 167 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCCSS--CCB------SCEEEEE--
T ss_pred eEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc--ccc------ceEEEEE--
Confidence 54332222221122222222 44 677777644 358889988765332211110 011 1122223
Q ss_pred CCCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C-----C
Q 012712 214 RNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-----E 282 (458)
Q Consensus 214 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-----~ 282 (458)
+ +.+++.|+.+ ..+.+||+.+.+......+ .. .......+.+ ++++++.|+ + .
T Consensus 168 ~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------------p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 231 (308)
T 1zgk_A 168 N-RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM------------NT-IRSGAGVCVL--HNCIYAAGGYDGQDQLN 231 (308)
T ss_dssp T-TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC------------SS-CCBSCEEEEE--TTEEEEECCBCSSSBCC
T ss_pred C-CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC------------CC-ccccceEEEE--CCEEEEEeCCCCCCccc
Confidence 2 5677777754 4588999987765322111 00 0111122222 566766665 2 3
Q ss_pred cEEEEEccCC
Q 012712 283 FIYLFTQDMG 292 (458)
Q Consensus 283 ~i~i~~~~~~ 292 (458)
.+.+||+.+.
T Consensus 232 ~v~~yd~~~~ 241 (308)
T 1zgk_A 232 SVERYDVETE 241 (308)
T ss_dssp CEEEEETTTT
T ss_pred eEEEEeCCCC
Confidence 5888888763
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.87 E-value=0.19 Score=43.42 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=64.0
Q ss_pred ceEEEEEecCCC-EEEEecCCCeEEEEECCCccee---eee---ccCCCcceeEEEEccCCC---CeEEEEEc-C-----
Q 012712 63 CVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVK---LSF---HSGHNDNVFQAKIMPFTD---DRSIVTCA-A----- 126 (458)
Q Consensus 63 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~---~~~---~~~~~~~i~~~~~~~~~~---~~~l~s~~-~----- 126 (458)
.-..|+|.|+|+ ++++ ...+.|++++.+ +... ..+ ..........++++| + +..|..+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP--DFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT--THHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC--CCCCCCEEEEEEeCCCCCC
Confidence 457999999998 6654 557899999854 3321 111 112234578999998 6 44444432 2
Q ss_pred --CCcEEEeeccccc----ceee--eecc---ccccceEEEEEcCCCCeEEEEecC-------------CCeEEEEeCCC
Q 012712 127 --DGQVRHAQILERG----GVET--KLLG---KHQGRAHKLAIEPGSPHVFYTCGE-------------DGLVQHFDLRT 182 (458)
Q Consensus 127 --dg~i~vw~~~~~~----~~~~--~~~~---~~~~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~ 182 (458)
...|..+++.... .... ..+. ........++|.|++ .++++.+. .|.|.-++...
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 1245556654321 1110 0111 111224579999999 66666543 24677777653
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.62 E-value=0.26 Score=42.56 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=35.5
Q ss_pred CCeEEEEEcCC-CcEEEeeccc--ccceeeeecc-ccccceEEEEEcCCCCeEEEEecC-C---------CeEEEEeCCC
Q 012712 117 DDRSIVTCAAD-GQVRHAQILE--RGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGE-D---------GLVQHFDLRT 182 (458)
Q Consensus 117 ~~~~l~s~~~d-g~i~vw~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-d---------g~i~iwd~~~ 182 (458)
++.+++.|+.+ ..+.++|..+ .+......+. ........+.+ ++ .+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DG-NLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TT-EEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CC-EEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 67777777653 4688888764 3322211122 11111122222 34 67777776 2 4688999887
Q ss_pred CCc
Q 012712 183 GAA 185 (458)
Q Consensus 183 ~~~ 185 (458)
.+-
T Consensus 96 ~~W 98 (357)
T 2uvk_A 96 NSW 98 (357)
T ss_dssp TEE
T ss_pred CcE
Confidence 653
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.52 E-value=0.42 Score=42.82 Aligned_cols=110 Identities=13% Similarity=0.219 Sum_probs=59.9
Q ss_pred cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc------cccceEEEEEcCC---CCeEEEEecC----
Q 012712 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------HQGRAHKLAIEPG---SPHVFYTCGE---- 171 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~l~s~~~---- 171 (458)
.....|+|.| +|+++++-...+.|++++..++.......+.. .......|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3567999999 99877776554568888765443322111221 2356779999995 4355555432
Q ss_pred --------CCeEEEEeCCCCC--c---cceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 172 --------DGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 172 --------dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
...|.-+++.... . ...+...+ ... ......|+|.||+ .+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--~~~----~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SSK----DHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CCS----SCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC--CCC----CCCCCeEeECCCC-eEEEEEC
Confidence 2356666654321 1 11111111 111 1236889999984 5555433
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.36 Score=41.06 Aligned_cols=202 Identities=10% Similarity=-0.069 Sum_probs=101.1
Q ss_pred CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEE---EecCCCEEEEe-cCCCeEE
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS---FNTDGDILISG-SDDRRVI 86 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~s~~~~~l~s~-~~d~~i~ 86 (458)
.+++.++.||.|.-.|.++|+...+.... ...++.... ...++..++.. ..||.|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--------------------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~ 70 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--------------------NFQPLIEIQEPSRLETYETLIIEPFGDGNIY 70 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--------------------GSCCSEECCCSCTTTSSEEEEECCSTTTEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--------------------ccCCcEEecCCccccCCcEEEEEECCCCEEE
Confidence 46888999999999999999887551110 001111100 00133334433 5789999
Q ss_pred EEECCCcceeeeeccC---CCcceeEEEEccCC-------CCeEEEEEcCCCcEEEeecccccceeeeeccccccc----
Q 012712 87 LWDWKTERVKLSFHSG---HNDNVFQAKIMPFT-------DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---- 152 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~-------~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---- 152 (458)
.++..+|.....+... ...++.. .=.|.- .+..+++++.+|.+...|+.+++.+...........
T Consensus 71 a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 149 (339)
T 2be1_A 71 YFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQ 149 (339)
T ss_dssp EEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----
T ss_pred EEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccc
Confidence 9998887554433111 1112221 111111 456888999999999999999988766433221111
Q ss_pred -eEEEEEc---C-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCC
Q 012712 153 -AHKLAIE---P-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDE 226 (458)
Q Consensus 153 -v~~~~~~---~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg 226 (458)
..|.... . .....++.+..+..+.+.+ ++++ ...+......... ....+ ..-..+.+ +.+ +.++.||
T Consensus 150 ~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~~~~~s~D-g~~-~~~~~dg 222 (339)
T 2be1_A 150 SVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLALQNTFSKD-GMC-IAPFRDK 222 (339)
T ss_dssp ---------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHTTCSSCSS-SCC-EEEETTT
T ss_pred ccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccc---cccccccccccccC-CcE-EEECCCC
Confidence 0111110 0 1113566677777777766 4453 2222111000000 00000 00001122 334 4467888
Q ss_pred eEEEEecCCCccCC
Q 012712 227 YTRLYDIRKYKWDG 240 (458)
Q Consensus 227 ~i~i~d~~~~~~~~ 240 (458)
.|.-+|..+++..-
T Consensus 223 ~v~A~d~~~G~~~W 236 (339)
T 2be1_A 223 SLLASDLDFRIARW 236 (339)
T ss_dssp EEEEECSTTCCEEE
T ss_pred EEEEEECCCCcEEE
Confidence 88888888776543
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.44 E-value=0.35 Score=40.95 Aligned_cols=153 Identities=13% Similarity=0.151 Sum_probs=76.3
Q ss_pred ecCCCEEEEecC----CC-------eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-------CcEE
Q 012712 70 NTDGDILISGSD----DR-------RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQVR 131 (458)
Q Consensus 70 s~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-------g~i~ 131 (458)
..++.+++.|+. ++ .+.+||..+.+-...-.......-.+++.. ++..++.|+.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEE
Confidence 456778888873 11 277788876653221100111111222222 67788887754 2477
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
++|..+.+......+....... +++. .++ .+++.|+.+ ..+.+||+.+.+-...-..+ .... .
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~------~ 199 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGH-NVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--TPRS------M 199 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESC-EEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS--SCCB------S
T ss_pred EEeCCCCCEeECCCCCCccccc-EEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC--CCcc------c
Confidence 7888766543322122111111 2222 344 677777642 35889998876533221111 0010 1
Q ss_pred eEEEEECCCCCcEEEEecCC-----CeEEEEecCCCccC
Q 012712 206 LNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 239 (458)
..++.+ ++.+++.|+.+ ..+.+||+.+.+..
T Consensus 200 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 200 FGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp CEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 122222 24677777643 35778998877643
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.40 E-value=0.71 Score=44.09 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=80.5
Q ss_pred CCeEEEEEcCC----CcEEEeecccccceeee-ec----cccccceEEEEEcC-CCCeEEEEecCCC------eEEEEeC
Q 012712 117 DDRSIVTCAAD----GQVRHAQILERGGVETK-LL----GKHQGRAHKLAIEP-GSPHVFYTCGEDG------LVQHFDL 180 (458)
Q Consensus 117 ~~~~l~s~~~d----g~i~vw~~~~~~~~~~~-~~----~~~~~~v~~~~~~~-~~~~~l~s~~~dg------~i~iwd~ 180 (458)
++..++.|+.+ ..+.+||..++...... .. ......-.+++..+ ++ .+++.|+.++ .+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeC
Confidence 67777787753 45788888776544322 10 01111122333333 55 6778877543 5788888
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
.+.+-...-..+. .... .+++...+ +.+++.|+.++ .+.+||..+.+....... ....
T Consensus 476 ~t~~W~~~~~~p~--------~R~~-h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~----------g~~p 535 (695)
T 2zwa_A 476 KTREWSMIKSLSH--------TRFR-HSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPK----------DEFF 535 (695)
T ss_dssp TTTEEEECCCCSB--------CCBS-CEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCS----------SGGG
T ss_pred CCCcEEECCCCCC--------Cccc-ceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCC----------CCCC
Confidence 8764332211110 0011 22233223 57888887654 699999988765322110 0011
Q ss_pred ccccceeEEEeCCC-CcEEEEecC--------CcEEEEEccCC
Q 012712 259 DEQVGITGLAFSDQ-SELLVSYND--------EFIYLFTQDMG 292 (458)
Q Consensus 259 ~~~~~i~~~~~~~~-~~~l~~~~~--------~~i~i~~~~~~ 292 (458)
........+.+..+ +++++.|+. +.+..||+.+.
T Consensus 536 ~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 536 QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 11112233555555 667776652 24888898774
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.08 E-value=0.75 Score=41.21 Aligned_cols=106 Identities=14% Similarity=0.270 Sum_probs=60.8
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eeecc-----CCCcceeEEEEccCCC---CeEEEEEcC-----
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHS-----GHNDNVFQAKIMPFTD---DRSIVTCAA----- 126 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~-----~~~~~i~~~~~~~~~~---~~~l~s~~~----- 126 (458)
..-..|+|.|+|+++++-...+.|++++..++... ..+.. ........|+|+| + +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEEEEeccccC
Confidence 35579999999998877555457888876555432 22211 1245677999998 6 555554432
Q ss_pred --------CCcEEEeeccccc-------ceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712 127 --------DGQVRHAQILERG-------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (458)
Q Consensus 127 --------dg~i~vw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (458)
...|.-++..... .+....-.........|+|.|+| +++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 1245555543221 11110011112346889999999 5666544
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.00 E-value=0.67 Score=39.98 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=47.3
Q ss_pred CCCEEEEecCC-CeEEEEECCC--cce--eeeeccCCCcceeEEEEccCCCCeEEEEEcC-C---------CcEEEeecc
Q 012712 72 DGDILISGSDD-RRVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D---------GQVRHAQIL 136 (458)
Q Consensus 72 ~~~~l~s~~~d-~~i~iwd~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d---------g~i~vw~~~ 136 (458)
++++++.|+.+ ..+.++|..+ .+- +..+ ......-.+++.. ++.+++.|+. + ..+.+||..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~-p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAF-PGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCC-TTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCC-CCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 56666777643 4688889864 221 1111 1011111222222 6778888776 2 468888887
Q ss_pred cccceeeeeccccccceEEEEEcCCCCeEEEEecCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 172 (458)
+.+.............-.+++. .++ .+++.|+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV-HNG-KAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE-ETT-EEEEEECCC
T ss_pred CCcEEECCCCCCcccccceEEE-ECC-EEEEEeCcC
Confidence 7654432222201111122222 345 677888754
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.28 Score=41.69 Aligned_cols=117 Identities=11% Similarity=0.118 Sum_probs=69.2
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC-CCCeEEEEE-cCCCcEEEeecccccceeeeecccc--
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTC-AADGQVRHAQILERGGVETKLLGKH-- 149 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~-- 149 (458)
.+++.++.||.|.-.|.++|+...++......++....-... .++..++.. ..||.|..++..++..........-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 467888899999999999998888774331122222110000 033444443 5789998888877644332222111
Q ss_pred ccceEE---EEE-cC----CCCeEEEEecCCCeEEEEeCCCCCccceeee
Q 012712 150 QGRAHK---LAI-EP----GSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 150 ~~~v~~---~~~-~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 191 (458)
..++.. ... .+ .+ ..+++++.+|.+...|+++|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 111111 000 00 23 5689999999999999999998877754
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.84 E-value=0.68 Score=38.80 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=71.8
Q ss_pred ecCCCEEEEec--CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC--------------CcEEEe
Q 012712 70 NTDGDILISGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------------GQVRHA 133 (458)
Q Consensus 70 s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--------------g~i~vw 133 (458)
+++|.+|.-.. .++.|...+.+... ...+ .. .. +--+++ ++.+|+.+... ..|+..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l-~~--~~--~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKL-SN--DT--AMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEE-EE--EE--EEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEc-cC--Cc--eeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 45666666543 34666666755433 3333 11 12 334567 88888877543 345666
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEe---cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC---GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
++...+... +.. . ....+++++..+.++- .....|...++...... .+.. + .+ .+
T Consensus 94 ~~dg~~~~~---l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~----------~--~~--~~ 151 (302)
T 3s25_A 94 KRNGHGSTV---LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN----------H--YL--FT 151 (302)
T ss_dssp ETTSCCCEE---EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEES----------S--CC--CC
T ss_pred eCCCCcceE---eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeC----------C--Cc--eE
Confidence 665544322 211 1 1236677775555554 33456666677644432 2221 1 11 34
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
++|+++.+..+......|...++....
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCC
Confidence 566654555554446778887776543
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.71 E-value=1.5 Score=41.85 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=83.3
Q ss_pred CCCEEEEecCC------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--cEEEeecccccceee
Q 012712 72 DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVET 143 (458)
Q Consensus 72 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~~~~~~ 143 (458)
++++++.||.+ ..+.+||..+.+-...-.......-.+++... ++..++.|+.++ .+.+||..+......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 67777777753 35788898875432211001111112333334 778888887654 688999887654332
Q ss_pred ee---ccccccceEEEEEcCCCCeEEEEecC--C-----CeEEEEeCCCCCc-----cceeeecccCCCCcceeecceEE
Q 012712 144 KL---LGKHQGRAHKLAIEPGSPHVFYTCGE--D-----GLVQHFDLRTGAA-----TELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 144 ~~---~~~~~~~v~~~~~~~~~~~~l~s~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
.. .........++.+..+...+++.|+. + ..+..||+.+... -..+...+..... ...+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~------~~~~ 602 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY------GSQI 602 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB------SCEE
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc------cceE
Confidence 21 11111222335556552377888876 2 4588999988772 1111111111111 1122
Q ss_pred EEECCCCCcEEEEecCC--------CeEEEEecCCCcc
Q 012712 209 IAIDPRNANLFAVAGSD--------EYTRLYDIRKYKW 238 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~ 238 (458)
+.+. + +.+++.|+.+ ..+.+||+.+.+.
T Consensus 603 ~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 603 KYIT-P-RKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEE-T-TEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEeC-C-CEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 3332 2 4677777743 4588888887764
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.22 E-value=1.6 Score=39.08 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 181 (458)
.....|+|.|++...++.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3557899999984234555678999999754
No 348
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.63 E-value=2 Score=37.14 Aligned_cols=193 Identities=11% Similarity=0.121 Sum_probs=99.4
Q ss_pred eEEEEeCCCC--CccceeeecccCCCCcceeecceEEEEEC---CC---CCcEEEEe-cCCCeEEEEecCCCccCCCccC
Q 012712 174 LVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAID---PR---NANLFAVA-GSDEYTRLYDIRKYKWDGSTDF 244 (458)
Q Consensus 174 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~---~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~ 244 (458)
.|.+||+.+. +.++.+..+..... ....+..+.+. |. +..+++.+ ...+.|.++|+.+++.-....-
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~----~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE----KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC----CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc----cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC
Confidence 4678888888 77777766433222 22356777777 22 12344433 3467899999998764222100
Q ss_pred -CCCCCCcCCCcccccc----ccceeEEEeCCC----CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712 245 -GQPADYFCPPNLIGDE----QVGITGLAFSDQ----SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (458)
Q Consensus 245 -~~~~~~~~~~~~~~~~----~~~i~~~~~~~~----~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (458)
-.+... ......+. ...+..|+++|+ ++.|....-.+-++|.+.+......-
T Consensus 200 ~~~pd~~--~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~----------------- 260 (381)
T 3q6k_A 200 TFKAERP--TKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG----------------- 260 (381)
T ss_dssp GGSCCSC--EEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT-----------------
T ss_pred CCccccC--cceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc-----------------
Confidence 000000 00001111 247889999998 67777666554455555432111000
Q ss_pred CccccCCCCCCcccccCceeecCccc-eeeeeEEEEec-CCCcEEEEecCCCeEEEEEecC-C---eEEEEeec--CCce
Q 012712 316 HTSAASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFG-PKCEYVVSGSDCGRIFIWKKKG-G---ELIRVIEA--DRHV 387 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~--~~~~ 387 (458)
....++.+ +... ......+++ + .+|.++++--..+.|..|+..+ . +....+.. .-..
T Consensus 261 -------------~~~~v~~~-G~kg~~s~~~~~~~-D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~ 325 (381)
T 3q6k_A 261 -------------GKLNPELL-GNRGKYNDAIALAY-DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF 325 (381)
T ss_dssp -------------CCCCCEEE-EECCTTCCEEEEEE-CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred -------------hhhceEEe-eecCCCCCcceEEE-eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence 00111111 1111 011234455 6 6787777777889999999864 1 12233321 1224
Q ss_pred eeEEEecCCCCeEEEee
Q 012712 388 VNCIEPHPHSTVLASSG 404 (458)
Q Consensus 388 v~~~~~s~~~~~l~s~~ 404 (458)
+..+.+.++|.+.+..+
T Consensus 326 pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 326 GTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEEECTTSCEEEEEC
T ss_pred cCeEEECCCCeEEEEEC
Confidence 67777777776555543
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.06 E-value=7.4 Score=33.97 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=67.6
Q ss_pred CEEEEecCCCeEEEEECCC-cceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCC--cEEEeecccc-cceeeee---
Q 012712 74 DILISGSDDRRVILWDWKT-ERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILER-GGVETKL--- 145 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~-~~~~~~~--- 145 (458)
..|..|...| +.+++... +..-... .......|.+|++.|. +...|..+...| .-.||....+ +.-....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~-~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPR-EPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSS-STTCEEEEEEC--CCEEEEEESSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCC-CCCeEEEEecCCCCCccEEEeCCCCCCceECCccc
Confidence 3566677666 55555332 2211111 0122457999999873 234444444444 0123333222 2111110
Q ss_pred -ccc--------cccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCC---------Ccceeecce
Q 012712 146 -LGK--------HQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR---------RNYMTVVNL 206 (458)
Q Consensus 146 -~~~--------~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~v 206 (458)
+.. ....|.++++.|.+ +..++.++..+.|...+- .++.-..+........ .+......+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 110 11257788998732 344666666665554432 2222111110000000 000012357
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEE
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
.+|.++|.+...++.+..++.|...
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEE
Confidence 8899998544555556555545443
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.32 E-value=6.8 Score=32.32 Aligned_cols=248 Identities=13% Similarity=0.022 Sum_probs=131.5
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (458)
...|..++... ...++. . ||.+..|-......+.. .......|..++..... .++. . ||.|..|-....
T Consensus 23 ~~~i~~ia~G~---~h~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~ 91 (282)
T 3qhy_B 23 QSGVDAIAGGY---FHGLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNED 91 (282)
T ss_dssp SSSCCEEEECS---SEEEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTT
T ss_pred cCCCcEEEeCC---CeEEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCC
Confidence 34677887753 334444 4 89999998765443321 11123467778776653 3444 4 899999976543
Q ss_pred CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
..... +.. ....|..++.... ..+.-. +|.|+.|-........ ........
T Consensus 92 Gqlg~---P~~-------~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg---------------~~~~~~~~ 142 (282)
T 3qhy_B 92 GQTTV---PAE-------ARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTT---------------VPAEAQSG 142 (282)
T ss_dssp STTCC---CGG-------GSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTS---------------CCGGGGSS
T ss_pred CCCCC---Ccc-------cCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCC---------------CCccCCCC
Confidence 22211 000 1125777777653 333334 9999999776533211 01112345
Q ss_pred eeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712 264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (458)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
|..++...+..++++ ++.++.|-......... .... ..
T Consensus 143 i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~-----------------------------------p~~~-----~~ 180 (282)
T 3qhy_B 143 VTALDGGVYTALAVK--NGGVIAWGDNYFGQTTV-----------------------------------PAEA-----QS 180 (282)
T ss_dssp EEEEEECSSEEEEEE--TTEEEEEECCTTSTTSC-----------------------------------CGGG-----GS
T ss_pred eEEEEcccCEEEEEE--CCEEEEecCCCCCCCCC-----------------------------------ceec-----CC
Confidence 777766554433333 68899997654211100 0000 01
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP 423 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 423 (458)
.|..++. ..+ ..++. .||.|+.|-......+..-......|..++-..... ++.. ||.|..|-........+
T Consensus 181 ~v~~i~~-G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~gq~~v- 252 (282)
T 3qhy_B 181 GVDDVAG-GIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRTAPSSV- 252 (282)
T ss_dssp SEEEEEE-CSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCCCCGGG-
T ss_pred CeEEEEe-cCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCCccccC-
Confidence 2666665 332 33444 599999997654322211111123466676544333 3333 89999997665544433
Q ss_pred cccccEEEEEEecCCcEEEe
Q 012712 424 TNIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 424 ~~~~~v~~~~~s~d~~~l~s 443 (458)
...|.+++-...-...++
T Consensus 253 --~~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 253 --QSGVSSIEAGPNAAYALK 270 (282)
T ss_dssp --SSCEEEEEECSSCEEEEE
T ss_pred --CCCcEEEEECcCeEEEEe
Confidence 235777776665555444
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.19 E-value=11 Score=34.46 Aligned_cols=114 Identities=6% Similarity=-0.037 Sum_probs=64.9
Q ss_pred cceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 262 VGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
.....+..+|||++++.++ +.++.+++...-.....-. ..+.. .........-
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k------------------------~~~~~-~~~~ae~e~G 377 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK------------------------LADPR-DVIVGEPELG 377 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC------------------------CSCGG-GGEEECCBCC
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc------------------------ccCcc-cceEeeccCC
Confidence 3456788999999999888 4589999987421000000 00000 0001111111
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----------eEEEEeecCCceeeEE-----EecCCCCeEEEee
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----------ELIRVIEADRHVVNCI-----EPHPHSTVLASSG 404 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~s~~~~~l~s~~ 404 (458)
.+ ....+| +++|.-..+---|..|.-|++... ..+..+.-|-.+---. .-.|||++|++..
T Consensus 378 lG---PlHt~F-d~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 378 LG---PLHTTF-DGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SC---EEEEEE-CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred Cc---ccEEEE-CCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 12 456777 999966666678999999999653 4555565554322111 2257788887763
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.05 E-value=16 Score=34.86 Aligned_cols=205 Identities=9% Similarity=-0.024 Sum_probs=100.3
Q ss_pred eEEEE-EecCCCEEEEe----cCC-CeEEEEECCCcceeeeeccC-CCc------ceeEEEEccCCCCeEEEEE------
Q 012712 64 VNTVS-FNTDGDILISG----SDD-RRVILWDWKTERVKLSFHSG-HND------NVFQAKIMPFTDDRSIVTC------ 124 (458)
Q Consensus 64 v~~~~-~s~~~~~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~-~~~------~i~~~~~~~~~~~~~l~s~------ 124 (458)
...+. ++|++++++.+ +.| ..++++|+.+++.+..-... -+. ....++|.. +...+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d--~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN--KDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE--TTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC--CCEEEEEeCCCCCC
Confidence 34455 88999887753 333 58999999998876432110 000 123458875 55555532
Q ss_pred ----cCCCcEEEeecccccceeeeeccccccce-EEEEEcCCCCe----EEEEecC---CCeEEEEeCCCCCc-cceeee
Q 012712 125 ----AADGQVRHAQILERGGVETKLLGKHQGRA-HKLAIEPGSPH----VFYTCGE---DGLVQHFDLRTGAA-TELFTC 191 (458)
Q Consensus 125 ----~~dg~i~vw~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~l~s~~~---dg~i~iwd~~~~~~-~~~~~~ 191 (458)
+....|+.|.+-+........+.+....+ .....++++.. .+++.+. ...+.+.+...... ...+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 12256888887665432222233322222 33455666642 3554432 24566666553221 111111
Q ss_pred cccCCCCcceeecceEEEEECCCCCcEEEEe----------cCCCeEEEEecCCCccCCCccCCCCCCCcCCCc-ccccc
Q 012712 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVA----------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGDE 260 (458)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 260 (458)
+ . .. .+..+++ +.+++.. ...+.|...|+.+...... ....... +....
T Consensus 289 ~---------~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 348 (711)
T 4hvt_A 289 P---------S--DA-TLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTES-------DKTSLKILFTPTA 348 (711)
T ss_dssp C---------T--TC-EEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGG-------GCTTCEEEECCCT
T ss_pred C---------C--cc-eEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCccccccc-------ccccceEEECCCC
Confidence 1 0 01 1122233 3444422 2466788888876421000 0000011 22333
Q ss_pred ccceeEEEeCCCCcEEEEec-CC--cEEEEEccC
Q 012712 261 QVGITGLAFSDQSELLVSYN-DE--FIYLFTQDM 291 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~-~~--~i~i~~~~~ 291 (458)
...+..+.+..+. ++++.. ++ .+.++++.+
T Consensus 349 ~~~l~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~ 381 (711)
T 4hvt_A 349 NEVFNFISTTKDR-VFLATYDNVVAKVVTFTLEN 381 (711)
T ss_dssp TEEEEEEEECSSC-EEEEEEETTEEEEEEECEET
T ss_pred CCeEEEEEEECCE-EEEEEEECCEEEEEEEECCC
Confidence 5567888998774 454444 44 477887654
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.18 E-value=14 Score=33.08 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=57.7
Q ss_pred ceEEEEEecCCC-EEEEecCCCeEEEEECCCcc---eeeeec----c----CCCcceeEEEEccCCC----CeEEEEEcC
Q 012712 63 CVNTVSFNTDGD-ILISGSDDRRVILWDWKTER---VKLSFH----S----GHNDNVFQAKIMPFTD----DRSIVTCAA 126 (458)
Q Consensus 63 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~---~~~~~~----~----~~~~~i~~~~~~~~~~----~~~l~s~~~ 126 (458)
.-+.|+|.|||. .|+.+...|.|++++..... .+..+. . ........|+|+| + +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P--~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP--NYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT--THHHHCEEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC--CCcCCCEEEEEEeC
Confidence 456899999995 44445678999999754321 112211 1 1145678999998 6 444443322
Q ss_pred --C----------CcEEEeecccc----------cceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712 127 --D----------GQVRHAQILER----------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (458)
Q Consensus 127 --d----------g~i~vw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 171 (458)
+ ..|.-|.+... +.+..............|+|.||+ +++++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCC
Confidence 1 13444555321 111111111222346789999999 56666554
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.52 E-value=9.9 Score=37.83 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (458)
..|.+++..++..++++-+.|+++|+|++.+++++...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35778888888899999999999999999999887654
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.05 E-value=15 Score=32.05 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=37.6
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc-CCCC--cceeecceEEEEECCCCCcEEEEecCCCe
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (458)
..+.+|.++|..+..++.+..++.|...+ ..++.-..+..... .... .......+.++.++|.++..++++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 35788999985433445554445444432 22222111110000 0000 0000124788999987556777776544
Q ss_pred EEEEe
Q 012712 228 TRLYD 232 (458)
Q Consensus 228 i~i~d 232 (458)
|...+
T Consensus 255 l~~s~ 259 (394)
T 3b7f_A 255 IYRMD 259 (394)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 54443
No 356
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.97 E-value=0.91 Score=41.11 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=53.3
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc---------cceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
.....+..+|+|.++++++-.+.++.++|++.... ......... -.......+|.++ ++-..+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-------~GlGPlHt~Fd~~-G~aYTt 394 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-------LGLGPLHTTFDGR-GNAYTT 394 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-------CCSCEEEEEECSS-SEEEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-------CCCcccEEEECCC-CceEee
Confidence 34567889999987777788889999999874211 111111111 1224577899998 566677
Q ss_pred ecCCCeEEEEecCCC
Q 012712 222 AGSDEYTRLYDIRKY 236 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~ 236 (458)
.--|..|.-|++...
T Consensus 395 lfidSqvvkWni~~a 409 (638)
T 3sbq_A 395 LFIDSQVVKWNMEEA 409 (638)
T ss_dssp ETTTTEEEEEEHHHH
T ss_pred eeecceEEEEeccHH
Confidence 779999999999753
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.16 E-value=29 Score=34.58 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=32.3
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 381 (458)
.+.+++. .++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~-~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEE-ETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEee-cCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3667776 788899999999999999999999998875
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.80 E-value=19 Score=29.66 Aligned_cols=183 Identities=14% Similarity=0.084 Sum_probs=97.9
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
.|..++.... ..++. . ||.|..|-......+- +.......|..++... ...++. . ||.|..|-......+.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~---~hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGN---YHSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECS---SEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCC---CEEEEE-E-CCEEEEeeCCCCCCCC
Confidence 4666665432 22333 4 7888888754332211 1112234677777753 334444 4 8999999866543322
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
. ...-...|..++..... . ++ -. ||.|+.|-........... . ....|..++.... ..++.
T Consensus 96 ~--P~~~~~~v~~ia~G~~h-s-~a-l~-~G~v~~wG~n~~gqlg~~~-~---------~~~~i~~i~~G~~--~~~~l- 156 (282)
T 3qhy_B 96 V--PAEARSGVDAIAAGAWA-S-YA-LK-DGKVIAWGDDSDGQTTVPA-E---------AQSGVTALDGGVY--TALAV- 156 (282)
T ss_dssp C--CGGGSSSEEEEEEETTE-E-EE-EE-TTEEEEEECCTTSTTSCCG-G---------GGSSEEEEEECSS--EEEEE-
T ss_pred C--CcccCCCeEEEECcCCE-E-EE-Ee-CCeEEEecCCCCCcCCCCc-c---------CCCCeEEEEcccC--EEEEE-
Confidence 1 11112467777776654 2 33 33 8999999765432221100 0 2234777776543 33333
Q ss_pred cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
. ||.|+.|-......... | ......|..++...+..+++ .++.++.|-...
T Consensus 157 ~-~G~v~~wG~n~~gqlg~-----p----------~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 157 K-NGGVIAWGDNYFGQTTV-----P----------AEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp E-TTEEEEEECCTTSTTSC-----C----------GGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred E-CCEEEEecCCCCCCCCC-----c----------eecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence 3 79999997765432210 1 11134577777655544433 678899997654
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=82.18 E-value=36 Score=32.52 Aligned_cols=70 Identities=4% Similarity=0.045 Sum_probs=42.2
Q ss_pred eeeEEEEecCCCcEEEEecCCC--eEEEEEecCCe-EEEE-eecC-CceeeEEEecCCCCeEE-Eee---cCCcEEEecC
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGGE-LIRV-IEAD-RHVVNCIEPHPHSTVLA-SSG---IESDIKILTP 414 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~s~~~~~l~-s~~---~d~~i~iw~~ 414 (458)
.+..+.+ ..+ .++++...++ .++++++.+++ .... +... .+.+.....++++..++ +.+ .-+.+..+++
T Consensus 351 ~l~~~~~-~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 351 VFNFIST-TKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEEE-CSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred eEEEEEE-ECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 5778887 654 5667777776 46777777775 2333 3221 24566667777776443 333 2357888887
Q ss_pred C
Q 012712 415 N 415 (458)
Q Consensus 415 ~ 415 (458)
.
T Consensus 429 ~ 429 (711)
T 4hvt_A 429 T 429 (711)
T ss_dssp T
T ss_pred C
Confidence 6
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.41 E-value=12 Score=38.30 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=31.2
Q ss_pred eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 382 (458)
+.+++. .++..++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~-~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEE-ETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeec-cCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455555 6788999999999999999999999988753
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.98 E-value=5.1 Score=40.88 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=31.9
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (458)
..+.+++..++..++++-+.|+++|+|++.++.++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34566677788899999999999999999999887664
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.31 E-value=39 Score=28.53 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=83.9
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (458)
+...+++.+.+|.|+.-.+..-....+ .+. ..-.++. .+.+..+........|+..+..|.+..+
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r----------~G~----~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRS----------GGI----VAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCS----------SCE----ESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhcccc----------Cce----EEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 466788888899988877663221110 010 0112333 3445555555555667777888888888
Q ss_pred ECC--Ccce-------eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-------ceeeeeccccccc
Q 012712 89 DWK--TERV-------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-------GVETKLLGKHQGR 152 (458)
Q Consensus 89 d~~--~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~ 152 (458)
... .-.. +..+.-.....|.++...+ ++..|+..+..|.++.-.+..-. .+....+..-.+.
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~--~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC--TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred ECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC--CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 766 2111 1111112345677776665 66788888999998887764322 1222122221333
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 181 (458)
+-.+....+. ..++..+.+|.+.-++..
T Consensus 251 lv~~~~~~~~-~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIVDDD-SELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEECTT-CEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEeCCC-ccEEEEcCCCeEEEEehh
Confidence 4444333333 345556666777667654
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=74.27 E-value=14 Score=34.20 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=40.7
Q ss_pred eEEEEecCCCcEEEEecCC------------CeEEEEEecCCeEEEEeecCC-ceeeEEEecCCCCeEEEe
Q 012712 346 KGVNFFGPKCEYVVSGSDC------------GRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 346 ~~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~ 403 (458)
-.++| +|.|+++++-..+ ..+.+.+..+++..+.+.++. ..++.++|+||++.|...
T Consensus 479 DNL~f-d~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEE-CTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEE-CCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45677 9999977654322 345566666787777676654 579999999999988765
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=71.18 E-value=20 Score=32.94 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.3
Q ss_pred eeEEEEecCCCcEEEEecC------------CCeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEe
Q 012712 345 VKGVNFFGPKCEYVVSGSD------------CGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~ 403 (458)
...+.| +++|.+.++... ...+..++..+++....+.+. ...++.++|+||++.|.++
T Consensus 478 PDnL~f-d~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEE-CTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEE-CCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 466777 999987773221 226777777778776666543 3578999999999988765
No 365
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.53 E-value=81 Score=30.62 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=76.2
Q ss_pred CCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCCeEEEEEcCCCc----
Q 012712 61 RGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (458)
Q Consensus 61 ~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~dg~---- 129 (458)
.+.|.+|+++|.. ..+..+...+.|...+ +.++.-..+... ....+.++++.|. +...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~-~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPN-NPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETT-EEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCC-CCCEEEEEeCccCCCcc
Confidence 4689999999953 4555566666555544 334332222111 1246999999882 2344444432211
Q ss_pred EEEeecccccceeee-ecc----c---cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcce
Q 012712 130 VRHAQILERGGVETK-LLG----K---HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (458)
Q Consensus 130 i~vw~~~~~~~~~~~-~~~----~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (458)
-.||.-..+...... ... . ....+..++++|..+..++.+...+.|. .....++.=..+...+ ....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~--~~~~-- 166 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIP--DAFT-- 166 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSC--CCCS--
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCc--cccC--
Confidence 344443333222111 111 0 0113567888887656677766444332 1222232211111100 0000
Q ss_pred eecceEEEEECCCCCcEEEEecCC
Q 012712 202 TVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
....+..+.++|.++..++++..+
T Consensus 167 ~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 167 NGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCeEEEEECCCCCCEEEEEEcC
Confidence 113477899998656566666554
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.78 E-value=78 Score=30.11 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.2
Q ss_pred eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (458)
|.++.+ +..++++-+.|+++|+|++.+++++.+..-
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444443 578999999999999999999998877653
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=66.95 E-value=25 Score=32.61 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=39.9
Q ss_pred ceEEEEEecCCCEEEEecCC------------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE
Q 012712 63 CVNTVSFNTDGDILISGSDD------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 124 (458)
..-.|.|+|.|++++.-..+ ..+.+.+..+++...-+......+++.++|+| |++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp--Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT--TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC--CCCEEEEE
Confidence 34678999999877654322 24556666666653333233457899999999 98877664
No 368
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=65.28 E-value=1e+02 Score=29.89 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=39.1
Q ss_pred ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
...|.+|+++|..+..+++++..+.|...+= .++.=..+..... ........+.+++++|.+...++++.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~---~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIE---AQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCC---GGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCC---cccccCCceeEEEECCCCCCEEEEEe
Confidence 4589999999987677788877776655542 2221111110000 00001235889999986455555554
No 369
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=58.50 E-value=91 Score=26.97 Aligned_cols=213 Identities=13% Similarity=0.098 Sum_probs=101.5
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcc-----------eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
.+..++++......+.-..||.|..|-..... ....+.......|..++.. ....+....+|.|.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G----~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG----GAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC----SSEEEEEETTSCEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC----cCeEEEEeCCCeEE
Confidence 45556666555566666778888888543211 0111111112256666553 34445556689999
Q ss_pred Eeecccccce---------eeeeccc-cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc------cceeeecccC
Q 012712 132 HAQILERGGV---------ETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA------TELFTCRPID 195 (458)
Q Consensus 132 vw~~~~~~~~---------~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~ 195 (458)
.|-......+ ....+.. ....|..++..... ...+.-..||.|+.|-....-. ..........
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 260 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence 9975432111 1111111 12346666665422 2345556789999996432111 0001110010
Q ss_pred CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (458)
.. ....|..++... ...++-..+|.|+.|-.........- .......|..+.......|..++.... ..
T Consensus 261 ~~----~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g---~~~~~~~P~~v~~l~~~~v~~ia~G~~-h~ 329 (389)
T 3kci_A 261 SL----TGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHG---SDDHVRRPRQVQGLQGKKVIAIATGSL-HC 329 (389)
T ss_dssp GG----TTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSS---SCCCEEEEEECGGGTTCCEEEEEECSS-EE
T ss_pred cc----CCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCC---CCccccCCeEeccCCCCCEEEEEeccC-eE
Confidence 00 111355666543 34445578899999976543322210 000011111111111234555554333 24
Q ss_pred EEEecCCcEEEEEccC
Q 012712 276 LVSYNDEFIYLFTQDM 291 (458)
Q Consensus 276 l~~~~~~~i~i~~~~~ 291 (458)
++...++.++.|-...
T Consensus 330 ~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 330 VCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETTCCEEEEECCT
T ss_pred EEECCCCCEEEeeCCC
Confidence 5555677899998664
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.71 E-value=63 Score=29.74 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=41.3
Q ss_pred CceEEEEEecCCCEEEEecC------------CCeEEEEECCCcceeeeeccC-CCcceeEEEEccCCCCeEEEEEc
Q 012712 62 GCVNTVSFNTDGDILISGSD------------DRRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
..-..|.|.++|.+.+.... ...+..++..+++... +... ....++.++|+| |++.|+.+-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~-fl~~P~~aEpnGiafSP--D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVGPIGCEVTGISFSP--DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE-EEECCTTCEEEEEEECT--TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE-EEeCCCCccccCCEECC--CCCEEEEEE
Confidence 34678999999987773221 1256667776776543 3333 346799999999 998887653
No 371
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=57.53 E-value=99 Score=27.09 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=59.7
Q ss_pred ceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee-----------eeeccccccceEEEEEcCCCCeEEEEecCCCe
Q 012712 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-----------TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 174 (458)
.|..++. .....+.-..||.|..|-......+- ...+. ....|..++.... ..+.-..||.
T Consensus 76 ~v~~va~----G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~---hs~al~~~G~ 147 (423)
T 3mvd_K 76 DAVDISA----GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDS---HSACLLEDGR 147 (423)
T ss_dssp SEEEEEE----CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSS---EEEEEETTSC
T ss_pred CceEEee----CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcC---eEEEEeCCCe
Confidence 4655554 44555666678999999764322110 00011 2235666666543 3345567899
Q ss_pred EEEEeC--CC-CCcc---ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 175 VQHFDL--RT-GAAT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 175 i~iwd~--~~-~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
|+.|-. .. ++.- ......+.... ....|..++... ...+.-..+|.|+.|-....
T Consensus 148 v~~wG~~~n~~GqlG~~~~~~~~~p~~~~----~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~ 208 (423)
T 3mvd_K 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDLM----EGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQ 208 (423)
T ss_dssp EEEEECEECSSSEEESBTTBCEEEEEESS----TTCCEEEEEECS---SEEEEEETTSCEEEEECCTT
T ss_pred EEEEeCCCCCCCCcCcCCCCCCceeeEec----CCCcEEEEecCC---CeEEEEecCCeEEEeeCCcC
Confidence 999975 21 2110 00000000000 122466666643 35555678899999976544
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.42 E-value=21 Score=33.76 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=28.9
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (458)
..|.++.+ +..+|++-+.|.++|+|++.++.++...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 34665554 4779999999999999999999877665
No 373
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=51.28 E-value=1.2e+02 Score=26.21 Aligned_cols=155 Identities=10% Similarity=0.111 Sum_probs=79.7
Q ss_pred cEEEeecccc--cceeeeeccc----cccceEEEEEc---CC----CCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712 129 QVRHAQILER--GGVETKLLGK----HQGRAHKLAIE---PG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 129 ~i~vw~~~~~--~~~~~~~~~~----~~~~v~~~~~~---~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
.|.+||+.++ +.+....+.. ....+..+.+. |. +....++=...+.|.++|+.+++.-+........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778888888 6665544432 23567788877 32 2233444445678999999988765544211111
Q ss_pred CC------Ccc--eeecceEEEEECCC---CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc--cc
Q 012712 196 DR------RNY--MTVVNLNAIAIDPR---NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QV 262 (458)
Q Consensus 196 ~~------~~~--~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 262 (458)
.. .+. .-...+..++++|+ +++.|+-....+ -++|.+.+.-+.... .. ......... ..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~-~~------~~v~~~G~kg~~s 275 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKG-GK------LNPELLGNRGKYN 275 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTT-CC------CCCEEEEECCTTC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcc-hh------hceEEeeecCCCC
Confidence 00 010 01246889999996 134444444333 234444432221110 00 011111111 12
Q ss_pred ceeEEEeC-CCCcEEEEec-CCcEEEEEccC
Q 012712 263 GITGLAFS-DQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 263 ~i~~~~~~-~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
.-..+++. .+|.++++-- .+.|..|+...
T Consensus 276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 33456775 5676555554 45799999764
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=43.54 E-value=1.6e+02 Score=25.40 Aligned_cols=172 Identities=9% Similarity=0.046 Sum_probs=81.8
Q ss_pred ceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce---------eeeecccc-ccceEEEEEcCCCCeEEEEecCCCeE
Q 012712 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV---------ETKLLGKH-QGRAHKLAIEPGSPHVFYTCGEDGLV 175 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~---------~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (458)
.+..++.+. .....+.-..||.|..|-......+ ....+... ...|..++.... ..++...+|.|
T Consensus 106 ~~~~v~i~~--G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~---hs~alt~~G~v 180 (389)
T 3kci_A 106 FIKKVAVNS--GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA---HSACVTAAGDL 180 (389)
T ss_dssp CEEEEEECT--TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS---EEEEEETTSCE
T ss_pred ceeEEEECc--CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC---eEEEEeCCCeE
Confidence 345556665 5566666677899999965432211 01111111 125666666543 34555678999
Q ss_pred EEEeCCCC------CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712 176 QHFDLRTG------AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (458)
Q Consensus 176 ~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (458)
+.|-.... .............. ....+..++.... ....+.-..+|.|+.|-.........- ....
T Consensus 181 ~~wG~n~~GqLG~~~~~~~~~p~~v~~~----~~~~v~~ia~G~g-~~~t~~l~~~G~v~~wG~n~~GqLG~g---~~~~ 252 (389)
T 3kci_A 181 YTWGKGRYGRLGHSDSEDQLKPKLVEAL----QGHRVVDIACGSG-DAQTLCLTDDDTVWSWGDGDYGKLGRG---GSDG 252 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGG----TTSCEEEEEECCS-SCEEEEEETTTEEEEEECCGGGTTSSS---SCCC
T ss_pred EEeCCCCCCCcCCCCCcccccceEeccc----CCCeEEEEEEcCC-CcEEEEEccCCEEEEEeCCCCCCCCCC---CCCC
Confidence 99964321 11111111111000 1224666666432 245556678899999976543322210 0000
Q ss_pred CcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
...|..+.......|..++.... ..++...++.++.|-...
T Consensus 253 ~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 253 CKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEEEECCG
T ss_pred ccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEEEeCCC
Confidence 00111111111223555554332 234445577899997644
No 375
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=42.52 E-value=2.4e+02 Score=27.20 Aligned_cols=162 Identities=13% Similarity=0.119 Sum_probs=75.6
Q ss_pred cCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeecc-------C----CCcceeEEEEccCCCCeEEEEEcC
Q 012712 59 KHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHS-------G----HNDNVFQAKIMPFTDDRSIVTCAA 126 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~----~~~~i~~~~~~~~~~~~~l~s~~~ 126 (458)
+-.+.|.+|.++|.+ ..+..+...+.|...+ +.++.-..+.. + ....+.++++.|...+..++..+.
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 356789999999966 4555555555554433 23332222211 0 224588999988422344443331
Q ss_pred ----CCcEEEeeccccc-ceeeeecccc-----cc--ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712 127 ----DGQVRHAQILERG-GVETKLLGKH-----QG--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (458)
Q Consensus 127 ----dg~i~vw~~~~~~-~~~~~~~~~~-----~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (458)
.....||.-..+. .-........ .. ....++++|..+..++.+...+.|. .....++.=.......
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~- 174 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLP- 174 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSC-
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCc-
Confidence 1123445443332 2111111100 11 1146888887555566666544332 1222232211111000
Q ss_pred CCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (458)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (458)
. .......+..++++|.++..++++..++
T Consensus 175 -~--~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 175 -D--SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp -C--CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred -c--cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0 0001124678899987555566666554
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=34.18 E-value=3.2e+02 Score=26.19 Aligned_cols=198 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred CceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCC------cceeEEEEccCCCCeEEEEEcCCC------
Q 012712 62 GCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHN------DNVFQAKIMPFTDDRSIVTCAADG------ 128 (458)
Q Consensus 62 ~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l~s~~~dg------ 128 (458)
+.|..|+++|.. ..+..+...+.|..++ +.++.-..+..... ..|.++++.|...+..++..+...
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Q ss_pred cEEEeecccccceeeeeccccc--------cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712 129 QVRHAQILERGGVETKLLGKHQ--------GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (458)
...||.-..+............ ..+..++++|..+..++.+...|.-.......++.-.....
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~S~DgG~tW~~~~~--------- 172 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWRSTDYGVTWSKVES--------- 172 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEEESSTTSSCEECTT---------
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEEeCCCCcceecccC---------
Q ss_pred eeecc-----------------eEEEEECCCCCc------EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 201 MTVVN-----------------LNAIAIDPRNAN------LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 201 ~~~~~-----------------v~~~~~~p~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
.... +..+.++|.+.. .++++..++.-.+|--..+-..-. ....
T Consensus 173 -~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~------------~~~~ 239 (737)
T 2cn3_A 173 -FPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWK------------AVPG 239 (737)
T ss_dssp -CCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCE------------ECTT
T ss_pred -CCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceE------------ECCC
Q ss_pred cccccceeEEEeCCCCcEEEEecCC
Q 012712 258 GDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
.........+.++|++.+.++..+.
T Consensus 240 ~p~~~~~~~~~~~~~~~l~~~~~d~ 264 (737)
T 2cn3_A 240 QPKGLLPHHGVLASNGMLYITYGDT 264 (737)
T ss_dssp CCCSSEEEEEEECTTSEEEEEEESS
T ss_pred CCCcccceEEEECCCCeEEEEecCC
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=33.99 E-value=2e+02 Score=23.82 Aligned_cols=212 Identities=9% Similarity=-0.009 Sum_probs=95.3
Q ss_pred CCeEEEEEcCCCcEEEeecccccc-------eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC---CCCCcc
Q 012712 117 DDRSIVTCAADGQVRHAQILERGG-------VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL---RTGAAT 186 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~---~~~~~~ 186 (458)
+...+++.+.+|.|+--.+.+-+. .....+... +.+..+...... ..++..+..|.++-+.. ......
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~-~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTH-DHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCC-CEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 567888999999998766543221 111112222 233333333333 34555666777655543 322110
Q ss_pred c-eeeecccCCCCcceeecceEEEEE-CC-CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712 187 E-LFTCRPIDDRRNYMTVVNLNAIAI-DP-RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (458)
Q Consensus 187 ~-~~~~~~~~~~~~~~~~~~v~~~~~-~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
. -.......... ....|.++.. .. ++..+++..+.+|.++.-.+........ .. .....+. ....-
T Consensus 80 a~G~~i~~~l~l~---~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r----~G---~~~i~l~-~~d~l 148 (307)
T 1zi0_A 80 ARGRPIVNLLPLE---QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT----AG---KVAIKLV-DGDEL 148 (307)
T ss_dssp SCCEEGGGTSCCC---TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT----TC---EESSCCC-TTCCE
T ss_pred CCCeEhhhccCCC---CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc----CC---eEEEEEC-CCCEE
Confidence 0 00000000000 1223444433 21 1245788889999999887764332110 00 0001111 12222
Q ss_pred eeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712 264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (458)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.......+..+++....+.+..++...-..... ...+...-.+....
T Consensus 149 v~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr-----------------------------~a~Gv~~i~L~~~d--- 196 (307)
T 1zi0_A 149 IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-----------------------------NTTGVRGIRLGEGD--- 196 (307)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT-----------------------------TCCCEECCCCCTTC---
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCC-----------------------------CCCCeEeEEeCCCC---
Confidence 3333334455566666677777777654211000 00011111122111
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
.+.++.. -+++..++..+..|.++..++..
T Consensus 197 ~Vv~~~~-~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 197 KVVSLIV-PRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CEEEEEC-CCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEEEEE-ecCCCEEEEEEcCCceEEEEHHH
Confidence 3556554 34556788888999998887743
No 378
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.87 E-value=1.1e+02 Score=20.59 Aligned_cols=46 Identities=4% Similarity=-0.086 Sum_probs=26.3
Q ss_pred eEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEe
Q 012712 389 NCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 389 ~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 443 (458)
..+.+..+|.+++... ++.+ +|...+... . ....+..-.||.+.+.
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~------~-~~~~~~L~~dGnlvly 104 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNTVGQ------E-GDYVLILQINGQAVVY 104 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSCCCS------S-SCCEEEECTTSCEEEE
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCCcCC------C-CCEEEEEcCCceEEEe
Confidence 4567788888777543 4444 787654211 0 1134556677766655
No 379
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=32.84 E-value=2.2e+02 Score=23.91 Aligned_cols=209 Identities=13% Similarity=0.090 Sum_probs=103.3
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE-
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW- 88 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw- 88 (458)
...+++-+.+|.|+--.+.+-+...+ +. .+.. -..++ ..+.+..+........|+.-+..|.+.-.
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~r-------gg-~g~~----~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~ 69 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKR-------GG-KGVQ----GAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAK 69 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------------------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEE
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhccc-------CC-CCcc----ccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 45678888889888665442111100 00 0000 00111 23345444444445555555666655443
Q ss_pred --ECCC------cceeeeecc-CCCcceeEEEEcc-CCCCeEEEEEcCCCcEEEeecccccc-----eeeeeccccccce
Q 012712 89 --DWKT------ERVKLSFHS-GHNDNVFQAKIMP-FTDDRSIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRA 153 (458)
Q Consensus 89 --d~~~------~~~~~~~~~-~~~~~i~~~~~~~-~~~~~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v 153 (458)
++.. |.++..++. .....|.++...+ +.+...+++++.+|.++--.+..-.. .....+.. .+.+
T Consensus 70 ~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~l 148 (327)
T 3uc1_A 70 AYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDEL 148 (327)
T ss_dssp GGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCE
T ss_pred HHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEE
Confidence 3332 222222211 2344565554332 22577899999999999887755322 11122333 3444
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCC--CCCccce-eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
..+...... ..++..+..|.+..+... .-..... -......... ....|.++...+. ...++..+..|.++.
T Consensus 149 v~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~---~~d~Vv~~~~~~~-~~~ll~~T~~G~~Kr 223 (327)
T 3uc1_A 149 VGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN---IDDRLLSLNVVRE-GTYLLVATSGGYAKR 223 (327)
T ss_dssp EEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC---TTCCEEEEEECCT-TCEEEEEETTSEEEE
T ss_pred EEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC---CCCEEEEEEEECC-CCEEEEEeCCCcEEE
Confidence 444444444 346667778888887766 2111000 0000000010 2234666655554 457888889999988
Q ss_pred EecCCCc
Q 012712 231 YDIRKYK 237 (458)
Q Consensus 231 ~d~~~~~ 237 (458)
-.+....
T Consensus 224 t~l~e~~ 230 (327)
T 3uc1_A 224 TAIEEYP 230 (327)
T ss_dssp EEGGGSC
T ss_pred EEHHHcc
Confidence 8776543
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=31.55 E-value=1.2e+02 Score=27.40 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=36.8
Q ss_pred EEEEecCCCeEEEEEec-CC-------eEEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEE
Q 012712 357 YVVSGSDCGRIFIWKKK-GG-------ELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKI 411 (458)
Q Consensus 357 ~l~~~~~dg~i~iwd~~-~~-------~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~i 411 (458)
.++.|+.+|.|.-.-+. .+ ..+.++.. ...+|..|.++++..+|..++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 45678899987644332 11 12333432 3568999999999999999988876665
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=29.14 E-value=1.4e+02 Score=27.32 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=38.2
Q ss_pred cEEEEecCCCeEEEEEecCC----eEEEEeec--CCceee-EEEecCCCCeEEEeecCCcEEE
Q 012712 356 EYVVSGSDCGRIFIWKKKGG----ELIRVIEA--DRHVVN-CIEPHPHSTVLASSGIESDIKI 411 (458)
Q Consensus 356 ~~l~~~~~dg~i~iwd~~~~----~~~~~~~~--~~~~v~-~~~~s~~~~~l~s~~~d~~i~i 411 (458)
..++.|+.+|.|.-..+... ..+.++.- ...+|. .|.+++++.+|..++.++.++|
T Consensus 414 tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 414 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 45668899998876655432 12333332 245785 9999999999999987766665
No 382
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.48 E-value=1.4e+02 Score=20.16 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=16.5
Q ss_pred eEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712 265 TGLAFSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
..+.+..+|.+++...++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 45677788887776554443 676543
No 383
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.12 E-value=2.2e+02 Score=26.37 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=37.2
Q ss_pred EEEEecCCCeEEEEEecC-C-----eEEEEee--cCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 357 YVVSGSDCGRIFIWKKKG-G-----ELIRVIE--ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 357 ~l~~~~~dg~i~iwd~~~-~-----~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
.++.|+.+|.|.-.-... + -.+.++. ....+|..|.++++...|..++.++.++|-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 566788899876443322 2 1223332 245678999999999999888877766663
No 384
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Streptococcus pneumoniae}
Probab=21.54 E-value=2e+02 Score=19.71 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=25.8
Q ss_pred cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 383 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
.....|..+.|.|..+.|..|. .++.|.++..++.
T Consensus 80 DGdqEikqV~iD~~NQ~m~IGD---Dvk~Y~lnGnQLt 114 (130)
T 3ge2_A 80 DGDQKVKQVTFDSANQRMIIGD---DVKIYTVNGNQIV 114 (130)
T ss_dssp TSCEEEEEEEEETTTTEEEETT---EEEEEEEETTEEE
T ss_pred CCCeeeEEEEEccCcCEEEecC---cceEEEecCCEEE
Confidence 3455789999999999988875 4667777665543
Done!