Query 012713
Match_columns 458
No_of_seqs 518 out of 2830
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 3.4E-20 7.4E-25 149.6 11.5 95 362-456 9-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 6.1E-20 1.3E-24 148.2 10.7 99 53-151 4-102 (103)
3 KOG0003 Ubiquitin/60s ribosoma 99.8 1.7E-21 3.7E-26 149.9 1.0 76 1-76 1-76 (128)
4 KOG0004 Ubiquitin/40S ribosoma 99.8 1.4E-19 3E-24 150.8 3.9 76 1-76 1-76 (156)
5 cd01807 GDX_N ubiquitin-like d 99.8 6.2E-19 1.3E-23 134.6 6.9 73 1-73 1-73 (74)
6 cd01793 Fubi Fubi ubiquitin-li 99.8 1E-18 2.2E-23 133.4 7.3 74 1-76 1-74 (74)
7 PTZ00044 ubiquitin; Provisiona 99.7 3.2E-18 6.8E-23 131.6 7.3 75 1-75 1-75 (76)
8 cd01797 NIRF_N amino-terminal 99.7 2.7E-18 5.8E-23 131.7 6.8 74 1-74 1-76 (78)
9 cd01793 Fubi Fubi ubiquitin-li 99.7 8E-18 1.7E-22 128.4 9.2 74 381-456 1-74 (74)
10 cd01807 GDX_N ubiquitin-like d 99.7 1.3E-17 2.8E-22 127.3 8.8 73 381-453 1-73 (74)
11 PTZ00044 ubiquitin; Provisiona 99.7 1.7E-17 3.8E-22 127.5 9.3 76 381-456 1-76 (76)
12 cd01797 NIRF_N amino-terminal 99.7 2.6E-17 5.6E-22 126.3 8.9 75 381-455 1-77 (78)
13 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.2E-17 2.5E-22 127.5 6.7 73 3-75 1-73 (74)
14 cd01810 ISG15_repeat2 ISG15 ub 99.7 3.6E-17 7.7E-22 124.8 9.0 74 383-456 1-74 (74)
15 KOG0005 Ubiquitin-like protein 99.7 5.9E-18 1.3E-22 115.9 3.6 70 1-70 1-70 (70)
16 cd01804 midnolin_N Ubiquitin-l 99.7 6E-17 1.3E-21 124.6 9.2 76 380-456 1-76 (78)
17 cd01806 Nedd8 Nebb8-like ubiq 99.7 7.4E-17 1.6E-21 124.0 9.6 76 381-456 1-76 (76)
18 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 7.5E-17 1.6E-21 121.8 8.8 71 381-451 2-72 (73)
19 cd01803 Ubiquitin Ubiquitin. U 99.7 1.2E-16 2.5E-21 122.9 9.3 76 381-456 1-76 (76)
20 cd01806 Nedd8 Nebb8-like ubiq 99.7 9.8E-17 2.1E-21 123.3 7.8 75 1-75 1-75 (76)
21 cd01803 Ubiquitin Ubiquitin. U 99.7 9.8E-17 2.1E-21 123.3 7.4 76 1-76 1-76 (76)
22 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 8E-17 1.7E-21 121.6 6.3 70 1-70 2-71 (73)
23 cd01805 RAD23_N Ubiquitin-like 99.7 3.2E-16 6.8E-21 120.8 9.4 74 381-454 1-76 (77)
24 cd01794 DC_UbP_C dendritic cel 99.7 2.1E-16 4.5E-21 118.6 8.0 69 384-452 2-70 (70)
25 cd01798 parkin_N amino-termina 99.7 9E-17 2E-21 121.3 5.9 70 3-72 1-70 (70)
26 cd01798 parkin_N amino-termina 99.7 3E-16 6.5E-21 118.4 8.1 70 383-452 1-70 (70)
27 cd01794 DC_UbP_C dendritic cel 99.7 1.6E-16 3.6E-21 119.1 5.9 67 5-71 3-69 (70)
28 cd01790 Herp_N Homocysteine-re 99.7 3.9E-16 8.4E-21 118.2 7.9 72 380-451 1-78 (79)
29 cd01804 midnolin_N Ubiquitin-l 99.6 2.8E-16 6E-21 120.9 6.6 75 1-76 2-76 (78)
30 KOG0003 Ubiquitin/60s ribosoma 99.6 2.1E-17 4.5E-22 127.5 0.1 76 229-304 1-76 (128)
31 cd01805 RAD23_N Ubiquitin-like 99.6 5.5E-16 1.2E-20 119.4 7.7 73 1-73 1-75 (77)
32 KOG0005 Ubiquitin-like protein 99.6 1.8E-16 4E-21 108.6 4.3 70 381-450 1-70 (70)
33 cd01792 ISG15_repeat1 ISG15 ub 99.6 9.5E-16 2.1E-20 118.7 8.2 74 380-453 2-77 (80)
34 PF00240 ubiquitin: Ubiquitin 99.6 1.3E-15 2.7E-20 114.8 8.1 69 386-454 1-69 (69)
35 cd01809 Scythe_N Ubiquitin-lik 99.6 8E-16 1.7E-20 116.9 6.8 71 1-71 1-71 (72)
36 cd01809 Scythe_N Ubiquitin-lik 99.6 2.1E-15 4.6E-20 114.6 8.7 72 381-452 1-72 (72)
37 KOG0004 Ubiquitin/40S ribosoma 99.6 2.9E-16 6.2E-21 131.1 3.8 76 77-152 1-76 (156)
38 cd01808 hPLIC_N Ubiquitin-like 99.6 2.3E-15 4.9E-20 113.9 8.4 71 381-452 1-71 (71)
39 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.3E-15 2.8E-20 118.0 5.8 72 1-72 3-76 (80)
40 cd01808 hPLIC_N Ubiquitin-like 99.6 2.1E-15 4.5E-20 114.1 6.5 71 1-72 1-71 (71)
41 cd01763 Sumo Small ubiquitin-r 99.6 1.1E-14 2.4E-19 114.4 10.4 79 378-456 9-87 (87)
42 cd01800 SF3a120_C Ubiquitin-li 99.6 5.6E-15 1.2E-19 113.2 8.0 70 388-457 5-74 (76)
43 cd01796 DDI1_N DNA damage indu 99.6 6.3E-15 1.4E-19 111.2 7.6 67 383-449 1-69 (71)
44 cd01796 DDI1_N DNA damage indu 99.6 4.3E-15 9.3E-20 112.1 5.4 68 3-70 1-70 (71)
45 PF00240 ubiquitin: Ubiquitin 99.5 2.1E-14 4.6E-19 108.1 7.8 69 82-150 1-69 (69)
46 cd01790 Herp_N Homocysteine-re 99.5 1.1E-14 2.3E-19 110.4 5.8 71 1-71 2-78 (79)
47 cd01800 SF3a120_C Ubiquitin-li 99.5 1.1E-14 2.5E-19 111.5 5.9 69 8-76 5-73 (76)
48 cd01763 Sumo Small ubiquitin-r 99.5 4.4E-14 9.6E-19 111.0 7.8 76 1-76 12-87 (87)
49 cd01812 BAG1_N Ubiquitin-like 99.5 5.3E-14 1.2E-18 106.5 7.7 70 381-451 1-70 (71)
50 cd01813 UBP_N UBP ubiquitin pr 99.4 3.2E-13 6.8E-18 102.5 7.9 69 381-450 1-72 (74)
51 cd01812 BAG1_N Ubiquitin-like 99.4 3.2E-13 6.8E-18 102.3 7.5 70 77-147 1-70 (71)
52 cd01813 UBP_N UBP ubiquitin pr 99.4 3.4E-13 7.4E-18 102.3 7.4 70 77-147 1-73 (74)
53 TIGR00601 rad23 UV excision re 99.4 3.3E-13 7.1E-18 133.3 8.8 74 381-454 1-77 (378)
54 cd01799 Hoil1_N Ubiquitin-like 99.4 3.2E-13 6.9E-18 102.5 6.3 70 1-71 1-74 (75)
55 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 7.8E-13 1.7E-17 98.7 5.5 55 397-451 16-74 (75)
56 smart00213 UBQ Ubiquitin homol 99.4 1.7E-12 3.7E-17 96.0 7.2 64 381-445 1-64 (64)
57 cd01799 Hoil1_N Ubiquitin-like 99.4 2.5E-12 5.3E-17 97.7 8.0 65 386-451 8-74 (75)
58 smart00213 UBQ Ubiquitin homol 99.3 1.8E-12 3.9E-17 95.8 6.2 64 1-65 1-64 (64)
59 cd01811 OASL_repeat1 2'-5' oli 99.3 2.9E-12 6.3E-17 92.8 6.8 74 305-379 1-79 (80)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 7.2E-13 1.6E-17 98.9 3.5 52 20-71 20-74 (75)
61 KOG0010 Ubiquitin-like protein 99.3 2.1E-12 4.7E-17 127.3 7.4 74 380-454 15-88 (493)
62 cd01814 NTGP5 Ubiquitin-like N 99.3 2E-12 4.4E-17 103.0 5.0 76 75-150 3-92 (113)
63 KOG0011 Nucleotide excision re 99.3 3.5E-12 7.5E-17 119.5 7.3 74 381-454 1-76 (340)
64 TIGR00601 rad23 UV excision re 99.3 3.1E-12 6.7E-17 126.4 7.0 73 1-73 1-76 (378)
65 cd01814 NTGP5 Ubiquitin-like N 99.3 2.1E-12 4.7E-17 102.9 4.2 73 2-74 6-92 (113)
66 cd01769 UBL Ubiquitin-like dom 99.2 5.8E-11 1.3E-15 89.1 7.8 67 385-451 2-68 (69)
67 PF11976 Rad60-SLD: Ubiquitin- 99.2 6.5E-11 1.4E-15 89.7 7.9 71 381-451 1-72 (72)
68 cd01795 USP48_C USP ubiquitin- 99.1 7.8E-11 1.7E-15 90.9 6.2 62 164-225 16-78 (107)
69 cd01795 USP48_C USP ubiquitin- 99.1 1.3E-10 2.7E-15 89.7 5.5 61 316-376 16-77 (107)
70 KOG0011 Nucleotide excision re 99.1 1.8E-10 3.9E-15 108.1 6.1 74 1-74 1-76 (340)
71 cd01769 UBL Ubiquitin-like dom 99.1 5.2E-10 1.1E-14 83.8 7.3 67 81-147 2-68 (69)
72 KOG0001 Ubiquitin and ubiquiti 99.1 6E-10 1.3E-14 84.3 7.7 73 2-74 1-73 (75)
73 KOG0010 Ubiquitin-like protein 99.0 3.1E-10 6.6E-15 112.2 6.5 74 75-149 14-87 (493)
74 PF11976 Rad60-SLD: Ubiquitin- 99.0 1.7E-09 3.7E-14 81.9 8.3 71 77-147 1-72 (72)
75 cd01789 Alp11_N Ubiquitin-like 98.8 1.5E-08 3.2E-13 78.9 8.5 70 382-451 3-80 (84)
76 KOG0001 Ubiquitin and ubiquiti 98.8 4.2E-08 9E-13 74.0 9.6 73 383-455 2-74 (75)
77 cd01789 Alp11_N Ubiquitin-like 98.7 5.5E-08 1.2E-12 75.8 8.3 70 154-223 3-80 (84)
78 cd01788 ElonginB Ubiquitin-lik 98.7 4.4E-08 9.4E-13 77.8 7.4 68 391-458 12-86 (119)
79 cd01788 ElonginB Ubiquitin-lik 98.7 4.3E-08 9.2E-13 77.9 7.3 74 153-226 1-82 (119)
80 PF13881 Rad60-SLD_2: Ubiquiti 98.7 9.5E-08 2.1E-12 78.0 9.6 74 380-453 2-89 (111)
81 PF14560 Ubiquitin_2: Ubiquiti 98.6 1.6E-07 3.4E-12 73.8 8.3 69 382-450 3-81 (87)
82 PLN02560 enoyl-CoA reductase 98.6 1.2E-07 2.5E-12 91.9 8.2 69 381-449 1-80 (308)
83 KOG4248 Ubiquitin-like protein 98.6 6.3E-08 1.4E-12 103.1 6.6 72 382-454 4-75 (1143)
84 PLN02560 enoyl-CoA reductase 98.6 8.8E-08 1.9E-12 92.7 6.6 70 1-70 1-81 (308)
85 PF14560 Ubiquitin_2: Ubiquiti 98.5 4.2E-07 9.2E-12 71.4 7.9 70 154-223 3-82 (87)
86 PF13881 Rad60-SLD_2: Ubiquiti 98.5 5.5E-07 1.2E-11 73.5 8.6 75 76-150 2-90 (111)
87 cd01811 OASL_repeat1 2'-5' oli 98.5 6E-07 1.3E-11 65.4 7.4 71 77-148 1-76 (80)
88 KOG4248 Ubiquitin-like protein 98.5 1.4E-07 3.1E-12 100.5 5.2 72 2-74 4-75 (1143)
89 cd01801 Tsc13_N Ubiquitin-like 98.4 5.5E-07 1.2E-11 69.0 6.3 55 395-449 16-74 (77)
90 PF11543 UN_NPL4: Nuclear pore 98.4 4.5E-07 9.8E-12 69.6 5.4 71 378-449 2-77 (80)
91 KOG1769 Ubiquitin-like protein 98.3 5.3E-06 1.2E-10 64.6 9.6 80 378-457 18-97 (99)
92 PF11543 UN_NPL4: Nuclear pore 98.2 2.1E-06 4.6E-11 65.9 5.5 71 151-222 3-78 (80)
93 cd01801 Tsc13_N Ubiquitin-like 98.2 4.1E-06 8.9E-11 64.1 6.5 52 170-221 20-74 (77)
94 cd00196 UBQ Ubiquitin-like pro 98.2 9.5E-06 2.1E-10 58.5 7.8 66 386-451 3-68 (69)
95 KOG3493 Ubiquitin-like protein 98.1 1.3E-06 2.9E-11 61.5 1.4 70 381-450 2-71 (73)
96 cd00196 UBQ Ubiquitin-like pro 98.0 3.4E-05 7.5E-10 55.5 7.1 64 160-223 5-68 (69)
97 KOG1769 Ubiquitin-like protein 97.9 9E-05 1.9E-09 57.9 8.5 78 152-229 20-97 (99)
98 KOG0006 E3 ubiquitin-protein l 97.8 4.4E-05 9.5E-10 71.4 5.8 70 382-451 2-74 (446)
99 KOG0006 E3 ubiquitin-protein l 97.8 4.2E-05 9E-10 71.6 5.6 72 78-149 2-77 (446)
100 KOG3493 Ubiquitin-like protein 97.7 1.9E-05 4.2E-10 55.8 1.8 69 154-222 3-71 (73)
101 COG5227 SMT3 Ubiquitin-like pr 97.7 4.3E-05 9.4E-10 57.9 3.7 80 378-457 22-101 (103)
102 KOG4495 RNA polymerase II tran 97.5 0.00012 2.6E-09 56.2 4.0 61 1-61 1-64 (110)
103 PF11470 TUG-UBL1: GLUT4 regul 97.5 0.00031 6.7E-09 51.4 5.5 63 235-297 3-65 (65)
104 KOG4495 RNA polymerase II tran 97.4 0.00018 3.9E-09 55.3 4.1 54 162-215 11-66 (110)
105 PF11470 TUG-UBL1: GLUT4 regul 97.1 0.002 4.4E-08 47.1 6.5 63 159-221 3-65 (65)
106 KOG1872 Ubiquitin-specific pro 97.1 0.00089 1.9E-08 66.7 6.1 71 78-149 5-76 (473)
107 KOG1872 Ubiquitin-specific pro 97.1 0.0014 3.1E-08 65.3 7.2 71 382-453 5-76 (473)
108 PF10302 DUF2407: DUF2407 ubiq 97.0 0.0017 3.7E-08 51.7 5.8 57 383-439 3-64 (97)
109 PF13019 Telomere_Sde2: Telome 97.0 0.0033 7.1E-08 54.4 7.5 75 1-75 1-87 (162)
110 PF08817 YukD: WXG100 protein 96.9 0.0024 5.1E-08 49.0 5.9 69 381-449 3-78 (79)
111 PF00789 UBX: UBX domain; Int 96.9 0.0066 1.4E-07 46.9 8.5 72 378-449 4-80 (82)
112 PF08817 YukD: WXG100 protein 96.8 0.0038 8.2E-08 47.9 6.1 68 154-221 4-78 (79)
113 PF13019 Telomere_Sde2: Telome 96.6 0.014 2.9E-07 50.6 8.8 76 381-456 1-88 (162)
114 COG5417 Uncharacterized small 96.6 0.014 3E-07 42.9 7.4 69 381-449 5-80 (81)
115 PF10302 DUF2407: DUF2407 ubiq 96.6 0.0056 1.2E-07 48.7 5.9 57 79-135 3-64 (97)
116 PF00789 UBX: UBX domain; Int 96.5 0.018 3.9E-07 44.4 8.2 71 152-222 6-81 (82)
117 cd01770 p47_UBX p47-like ubiqu 96.4 0.028 6E-07 43.1 8.2 69 379-447 3-75 (79)
118 smart00166 UBX Domain present 96.3 0.024 5.2E-07 43.5 7.6 70 152-221 4-78 (80)
119 smart00166 UBX Domain present 96.2 0.048 1E-06 41.8 8.9 71 379-449 3-78 (80)
120 COG5227 SMT3 Ubiquitin-like pr 96.0 0.0063 1.4E-07 46.4 2.9 74 152-225 24-97 (103)
121 KOG0013 Uncharacterized conser 96.0 0.01 2.3E-07 52.8 4.6 63 84-146 154-216 (231)
122 cd01767 UBX UBX (ubiquitin reg 95.8 0.086 1.9E-06 40.1 8.7 67 380-447 2-73 (77)
123 cd01774 Faf1_like2_UBX Faf1 ik 95.7 0.11 2.3E-06 40.5 8.9 71 378-449 2-82 (85)
124 KOG0013 Uncharacterized conser 95.7 0.016 3.6E-07 51.6 4.7 64 389-452 155-220 (231)
125 cd01772 SAKS1_UBX SAKS1-like U 95.6 0.07 1.5E-06 40.8 7.5 68 153-221 5-77 (79)
126 KOG4583 Membrane-associated ER 95.5 0.0061 1.3E-07 58.0 1.6 75 378-452 7-87 (391)
127 cd01767 UBX UBX (ubiquitin reg 95.5 0.095 2E-06 39.8 7.8 67 153-221 3-74 (77)
128 PF12436 USP7_ICP0_bdg: ICP0-b 95.5 0.087 1.9E-06 49.9 9.2 108 318-425 88-224 (249)
129 cd01772 SAKS1_UBX SAKS1-like U 95.3 0.18 3.9E-06 38.6 8.9 69 380-449 4-77 (79)
130 cd01770 p47_UBX p47-like ubiqu 95.0 0.13 2.8E-06 39.4 7.2 65 153-217 5-73 (79)
131 cd01773 Faf1_like1_UBX Faf1 ik 95.0 0.17 3.6E-06 38.9 7.7 69 153-222 6-79 (82)
132 cd01774 Faf1_like2_UBX Faf1 ik 94.8 0.2 4.4E-06 38.8 7.8 69 152-221 4-82 (85)
133 cd01771 Faf1_UBX Faf1 UBX doma 94.6 0.25 5.3E-06 37.9 7.8 69 152-221 4-77 (80)
134 COG5417 Uncharacterized small 94.5 0.24 5.2E-06 36.6 7.0 67 231-297 9-80 (81)
135 KOG1639 Steroid reductase requ 94.0 0.11 2.3E-06 47.8 5.4 69 381-449 1-76 (297)
136 PF11620 GABP-alpha: GA-bindin 93.9 0.43 9.4E-06 36.4 7.6 59 240-298 4-62 (88)
137 PF12436 USP7_ICP0_bdg: ICP0-b 93.8 0.51 1.1E-05 44.7 10.0 122 75-196 67-223 (249)
138 cd01773 Faf1_like1_UBX Faf1 ik 93.7 0.57 1.2E-05 36.0 8.1 70 229-299 6-80 (82)
139 PF14836 Ubiquitin_3: Ubiquiti 93.6 0.49 1.1E-05 36.7 7.7 67 391-458 14-86 (88)
140 PF15044 CLU_N: Mitochondrial 93.4 0.16 3.5E-06 38.5 4.7 55 397-451 1-57 (76)
141 PF14533 USP7_C2: Ubiquitin-sp 93.3 0.6 1.3E-05 43.1 9.2 104 163-268 34-162 (213)
142 cd01771 Faf1_UBX Faf1 UBX doma 93.2 0.83 1.8E-05 35.0 8.4 70 228-298 4-78 (80)
143 PF14533 USP7_C2: Ubiquitin-sp 93.1 0.68 1.5E-05 42.7 9.4 102 87-190 34-160 (213)
144 PF09379 FERM_N: FERM N-termin 92.4 0.77 1.7E-05 34.8 7.4 67 385-451 1-76 (80)
145 PF09379 FERM_N: FERM N-termin 92.3 0.87 1.9E-05 34.5 7.6 62 233-294 1-69 (80)
146 PRK06437 hypothetical protein; 92.1 1.3 2.7E-05 32.7 7.8 59 160-227 8-66 (67)
147 KOG1639 Steroid reductase requ 91.9 0.3 6.5E-06 44.9 5.2 69 153-221 1-76 (297)
148 PF15044 CLU_N: Mitochondrial 91.8 0.29 6.3E-06 37.1 4.2 59 321-379 1-61 (76)
149 KOG4583 Membrane-associated ER 91.4 0.098 2.1E-06 50.1 1.6 73 76-148 9-87 (391)
150 cd06409 PB1_MUG70 The MUG70 pr 91.1 0.73 1.6E-05 35.7 5.8 43 383-425 3-48 (86)
151 PRK08364 sulfur carrier protei 90.3 2.5 5.5E-05 31.3 8.0 66 381-456 5-70 (70)
152 PRK06437 hypothetical protein; 90.2 2.5 5.5E-05 31.1 7.9 58 390-456 10-67 (67)
153 cd01760 RBD Ubiquitin-like dom 89.4 1 2.2E-05 33.7 5.3 45 231-275 2-46 (72)
154 smart00455 RBD Raf-like Ras-bi 89.3 1.1 2.3E-05 33.4 5.3 44 232-275 3-46 (70)
155 KOG3206 Alpha-tubulin folding 89.2 1.1 2.4E-05 40.1 6.1 60 165-224 15-81 (234)
156 PF11620 GABP-alpha: GA-bindin 88.6 1.6 3.5E-05 33.3 5.7 60 165-224 5-64 (88)
157 smart00455 RBD Raf-like Ras-bi 88.4 1.7 3.7E-05 32.3 5.8 50 383-432 2-53 (70)
158 cd01760 RBD Ubiquitin-like dom 88.3 1.7 3.6E-05 32.6 5.7 45 383-427 2-46 (72)
159 cd00754 MoaD Ubiquitin domain 88.1 2.1 4.6E-05 32.4 6.5 60 392-456 17-80 (80)
160 cd00754 MoaD Ubiquitin domain 87.7 2.4 5.1E-05 32.1 6.5 60 164-228 17-80 (80)
161 PF08337 Plexin_cytopl: Plexin 86.8 0.97 2.1E-05 47.2 5.0 68 313-380 200-293 (539)
162 cd06406 PB1_P67 A PB1 domain i 86.7 3.3 7.1E-05 31.6 6.5 37 392-428 12-48 (80)
163 KOG3206 Alpha-tubulin folding 86.4 2.3 5E-05 38.2 6.4 70 382-451 3-80 (234)
164 cd06406 PB1_P67 A PB1 domain i 86.2 2.6 5.6E-05 32.1 5.7 38 164-201 12-49 (80)
165 cd06409 PB1_MUG70 The MUG70 pr 86.1 2.2 4.9E-05 33.0 5.5 43 155-197 3-48 (86)
166 PRK08364 sulfur carrier protei 85.5 7.4 0.00016 28.8 8.0 56 164-228 15-70 (70)
167 cd01818 TIAM1_RBD Ubiquitin do 85.0 2.3 5E-05 31.8 4.8 50 232-281 3-52 (77)
168 PF14836 Ubiquitin_3: Ubiquiti 84.9 5.8 0.00013 30.8 7.2 63 163-226 14-82 (88)
169 PLN02799 Molybdopterin synthas 84.6 3.7 8.1E-05 31.3 6.3 71 381-456 2-82 (82)
170 PRK06488 sulfur carrier protei 83.9 6.2 0.00013 28.6 6.9 60 161-228 6-65 (65)
171 PRK06488 sulfur carrier protei 83.9 5.3 0.00011 29.0 6.5 61 388-456 5-65 (65)
172 PLN02799 Molybdopterin synthas 83.7 4.6 9.9E-05 30.8 6.4 61 163-228 19-82 (82)
173 smart00295 B41 Band 4.1 homolo 83.7 7.3 0.00016 35.2 8.9 70 229-298 4-81 (207)
174 TIGR03028 EpsE polysaccharide 83.6 39 0.00084 31.7 21.3 207 210-449 1-234 (239)
175 KOG4261 Talin [Cytoskeleton] 83.2 0.77 1.7E-05 48.9 2.4 173 162-375 12-194 (1003)
176 cd06407 PB1_NLP A PB1 domain i 81.8 5.8 0.00013 30.5 6.2 41 160-200 7-48 (82)
177 PF02196 RBD: Raf-like Ras-bin 81.0 6.5 0.00014 29.3 6.0 57 383-439 3-61 (71)
178 smart00666 PB1 PB1 domain. Pho 80.8 6.3 0.00014 29.9 6.2 45 382-427 3-47 (81)
179 KOG0012 DNA damage inducible p 80.6 2 4.4E-05 41.9 4.0 61 389-449 11-73 (380)
180 smart00295 B41 Band 4.1 homolo 80.5 15 0.00032 33.1 9.7 73 379-451 2-82 (207)
181 PF14453 ThiS-like: ThiS-like 79.4 8.3 0.00018 27.3 5.7 48 389-449 6-53 (57)
182 PF02196 RBD: Raf-like Ras-bin 78.4 9.5 0.00021 28.4 6.2 45 3-47 3-47 (71)
183 TIGR01682 moaD molybdopterin c 78.2 14 0.00031 27.9 7.4 59 393-456 18-80 (80)
184 PRK07440 hypothetical protein; 78.1 15 0.00033 27.2 7.2 68 379-456 3-70 (70)
185 TIGR01683 thiS thiamine biosyn 77.8 11 0.00024 27.2 6.4 62 388-456 3-64 (64)
186 cd06407 PB1_NLP A PB1 domain i 77.8 6.3 0.00014 30.3 5.3 42 236-277 7-49 (82)
187 TIGR01682 moaD molybdopterin c 77.4 14 0.0003 28.0 7.1 60 164-228 17-80 (80)
188 PF02597 ThiS: ThiS family; I 77.0 7.3 0.00016 29.0 5.5 63 392-456 13-77 (77)
189 PF10790 DUF2604: Protein of U 76.6 12 0.00027 26.9 5.9 65 161-225 4-72 (76)
190 cd00565 ThiS ThiaminS ubiquiti 76.3 12 0.00025 27.1 6.2 61 389-456 5-65 (65)
191 PF14453 ThiS-like: ThiS-like 76.2 8.3 0.00018 27.3 5.0 46 1-57 1-46 (57)
192 PF10790 DUF2604: Protein of U 76.0 11 0.00024 27.1 5.5 65 237-301 4-72 (76)
193 PRK05863 sulfur carrier protei 75.8 16 0.00035 26.5 6.8 61 388-456 5-65 (65)
194 KOG4598 Putative ubiquitin-spe 75.0 8.6 0.00019 40.9 6.8 178 164-344 878-1101(1203)
195 TIGR01687 moaD_arch MoaD famil 74.6 20 0.00044 27.6 7.5 61 164-228 17-88 (88)
196 PF02597 ThiS: ThiS family; I 74.6 12 0.00026 27.8 6.1 63 164-228 13-77 (77)
197 PF12754 Blt1: Cell-cycle cont 74.3 1 2.2E-05 43.3 0.0 63 380-442 78-160 (309)
198 cd00565 ThiS ThiaminS ubiquiti 73.8 15 0.00032 26.6 6.2 58 166-228 8-65 (65)
199 KOG0012 DNA damage inducible p 73.4 4.8 0.0001 39.4 4.3 65 161-225 11-77 (380)
200 smart00666 PB1 PB1 domain. Pho 73.3 15 0.00032 27.7 6.4 39 161-199 9-47 (81)
201 TIGR01687 moaD_arch MoaD famil 71.0 22 0.00047 27.4 7.0 61 392-456 17-88 (88)
202 PF12754 Blt1: Cell-cycle cont 70.6 1.4 3E-05 42.3 0.0 43 172-214 103-160 (309)
203 PRK11840 bifunctional sulfur c 70.4 17 0.00036 35.6 7.3 64 388-458 5-68 (326)
204 TIGR01683 thiS thiamine biosyn 70.4 22 0.00048 25.6 6.4 61 161-228 4-64 (64)
205 PRK05659 sulfur carrier protei 69.9 28 0.0006 25.1 6.9 62 388-456 5-66 (66)
206 cd06408 PB1_NoxR The PB1 domai 69.8 23 0.00049 27.5 6.5 54 381-438 3-56 (86)
207 cd01817 RGS12_RBD Ubiquitin do 69.8 14 0.00031 27.6 5.2 44 233-276 4-47 (73)
208 KOG2086 Protein tyrosine phosp 68.8 9.3 0.0002 37.9 5.2 69 379-447 304-376 (380)
209 PRK08053 sulfur carrier protei 68.6 37 0.00079 24.6 7.3 61 389-456 6-66 (66)
210 PF02505 MCR_D: Methyl-coenzym 68.5 43 0.00092 28.8 8.4 110 317-440 6-121 (153)
211 smart00144 PI3K_rbd PI3-kinase 68.5 26 0.00056 28.4 7.1 63 11-73 29-105 (108)
212 KOG4250 TANK binding protein k 68.3 9.5 0.00021 40.9 5.5 44 8-51 322-365 (732)
213 cd01817 RGS12_RBD Ubiquitin do 68.1 22 0.00047 26.6 5.8 44 385-428 4-47 (73)
214 cd06408 PB1_NoxR The PB1 domai 68.1 27 0.00059 27.0 6.6 40 160-200 9-48 (86)
215 PRK05863 sulfur carrier protei 68.0 29 0.00063 25.1 6.6 59 161-228 6-65 (65)
216 PRK08053 sulfur carrier protei 67.7 42 0.0009 24.3 7.4 61 161-228 6-66 (66)
217 PF08337 Plexin_cytopl: Plexin 67.1 11 0.00024 39.5 5.7 64 390-453 201-290 (539)
218 COG2104 ThiS Sulfur transfer p 67.0 49 0.0011 24.4 7.6 60 390-456 9-68 (68)
219 KOG2086 Protein tyrosine phosp 66.8 9.1 0.0002 37.9 4.7 69 303-371 304-376 (380)
220 PRK06944 sulfur carrier protei 66.7 42 0.0009 24.0 7.3 60 389-456 6-65 (65)
221 KOG4598 Putative ubiquitin-spe 66.6 18 0.00039 38.7 6.9 183 88-273 878-1106(1203)
222 PRK06944 sulfur carrier protei 66.5 45 0.00097 23.9 7.4 60 161-228 6-65 (65)
223 cd06411 PB1_p51 The PB1 domain 65.9 13 0.00028 28.2 4.3 36 164-199 8-43 (78)
224 PRK05659 sulfur carrier protei 65.4 42 0.00091 24.1 7.1 61 161-228 6-66 (66)
225 smart00144 PI3K_rbd PI3-kinase 64.8 44 0.00095 27.1 7.7 75 380-454 17-106 (108)
226 PF00564 PB1: PB1 domain; Int 64.6 28 0.00061 26.3 6.4 45 383-427 4-48 (84)
227 cd05992 PB1 The PB1 domain is 63.6 21 0.00046 26.8 5.4 39 237-275 8-47 (81)
228 cd01777 SNX27_RA Ubiquitin dom 63.4 18 0.00038 28.1 4.7 39 230-268 3-41 (87)
229 PRK06083 sulfur carrier protei 63.3 30 0.00065 26.7 6.1 67 380-456 18-84 (84)
230 cd01764 Urm1 Urm1-like ubuitin 62.9 11 0.00024 29.7 3.8 60 167-228 23-94 (94)
231 PRK07696 sulfur carrier protei 62.9 49 0.0011 24.2 7.0 62 388-456 5-67 (67)
232 PF00564 PB1: PB1 domain; Int 62.8 29 0.00062 26.2 6.1 39 161-199 9-48 (84)
233 PRK06083 sulfur carrier protei 62.5 48 0.001 25.6 7.1 61 161-228 24-84 (84)
234 cd06411 PB1_p51 The PB1 domain 61.4 17 0.00036 27.6 4.2 36 240-275 8-43 (78)
235 KOG4261 Talin [Cytoskeleton] 61.1 22 0.00047 38.5 6.4 107 241-350 15-131 (1003)
236 PTZ00380 microtubule-associate 60.0 23 0.0005 29.3 5.2 58 395-452 45-105 (121)
237 KOG2982 Uncharacterized conser 59.9 14 0.0003 35.8 4.4 54 244-297 353-414 (418)
238 PF14732 UAE_UbL: Ubiquitin/SU 59.6 25 0.00054 27.3 5.1 55 395-449 2-66 (87)
239 KOG2982 Uncharacterized conser 59.5 10 0.00023 36.6 3.5 55 167-221 352-414 (418)
240 cd05992 PB1 The PB1 domain is 58.5 32 0.00069 25.8 5.6 38 161-198 8-46 (81)
241 PF11069 DUF2870: Protein of u 56.6 14 0.0003 29.2 3.2 34 422-455 3-37 (98)
242 TIGR02958 sec_mycoba_snm4 secr 56.4 56 0.0012 33.9 8.6 71 381-452 3-80 (452)
243 COG5100 NPL4 Nuclear pore prot 56.4 36 0.00077 34.0 6.6 70 381-451 1-78 (571)
244 cd01777 SNX27_RA Ubiquitin dom 55.9 26 0.00055 27.2 4.5 39 2-40 3-41 (87)
245 PF10209 DUF2340: Uncharacteri 55.9 23 0.00049 29.3 4.5 55 169-223 22-107 (122)
246 cd06396 PB1_NBR1 The PB1 domai 55.4 32 0.00069 26.3 4.9 37 235-273 6-44 (81)
247 PF00794 PI3K_rbd: PI3-kinase 54.1 72 0.0016 25.5 7.3 74 380-453 16-103 (106)
248 cd01818 TIAM1_RBD Ubiquitin do 53.7 42 0.0009 25.3 5.1 41 156-196 3-43 (77)
249 cd01611 GABARAP Ubiquitin doma 53.2 99 0.0021 25.3 7.9 60 394-453 44-107 (112)
250 cd06396 PB1_NBR1 The PB1 domai 52.8 46 0.00099 25.5 5.4 30 160-189 7-38 (81)
251 PF00788 RA: Ras association ( 52.6 48 0.001 25.4 5.9 33 240-272 18-52 (93)
252 cd01768 RA RA (Ras-associating 52.6 1E+02 0.0022 23.4 8.7 47 390-436 12-66 (87)
253 KOG3439 Protein conjugation fa 52.4 47 0.001 26.9 5.5 54 218-277 30-83 (116)
254 cd01768 RA RA (Ras-associating 52.3 44 0.00096 25.5 5.6 35 238-272 12-48 (87)
255 PF10407 Cytokin_check_N: Cdc1 51.9 33 0.00071 25.7 4.4 60 315-375 3-69 (73)
256 TIGR03260 met_CoM_red_D methyl 51.7 1E+02 0.0022 26.4 7.8 110 317-440 5-119 (150)
257 TIGR02958 sec_mycoba_snm4 secr 50.7 62 0.0013 33.5 7.9 72 154-226 4-82 (452)
258 KOG2689 Predicted ubiquitin re 50.2 38 0.00083 32.0 5.5 71 151-221 209-284 (290)
259 PF14732 UAE_UbL: Ubiquitin/SU 49.8 80 0.0017 24.4 6.6 54 248-301 8-70 (87)
260 PF10209 DUF2340: Uncharacteri 49.7 30 0.00065 28.6 4.2 54 245-298 22-106 (122)
261 PF08825 E2_bind: E2 binding d 49.2 22 0.00047 27.5 3.2 55 395-450 1-69 (84)
262 KOG4250 TANK binding protein k 49.2 36 0.00078 36.7 5.8 44 159-202 321-364 (732)
263 PF10787 YfmQ: Uncharacterised 47.9 57 0.0012 27.6 5.6 88 18-105 22-123 (149)
264 cd01764 Urm1 Urm1-like ubuitin 47.1 25 0.00054 27.7 3.4 60 395-456 23-94 (94)
265 PRK07440 hypothetical protein; 46.7 1.2E+02 0.0025 22.4 7.4 66 153-228 5-70 (70)
266 PF00794 PI3K_rbd: PI3-kinase 45.9 1.4E+02 0.0031 23.7 7.9 73 75-147 15-101 (106)
267 TIGR03028 EpsE polysaccharide 45.6 2.6E+02 0.0056 26.1 21.2 176 134-342 1-197 (239)
268 KOG4572 Predicted DNA-binding 45.2 27 0.00059 38.0 4.2 52 161-212 3-56 (1424)
269 KOG3439 Protein conjugation fa 44.8 68 0.0015 26.0 5.4 39 164-202 46-84 (116)
270 PF08783 DWNN: DWNN domain; I 43.9 76 0.0016 23.8 5.3 42 385-426 3-48 (74)
271 PF14451 Ub-Mut7C: Mut7-C ubiq 43.9 1E+02 0.0023 23.5 6.2 52 390-450 22-74 (81)
272 smart00314 RA Ras association 43.1 80 0.0017 24.2 5.8 36 237-272 14-51 (90)
273 KOG4572 Predicted DNA-binding 42.4 42 0.00091 36.6 5.0 54 237-290 3-58 (1424)
274 cd06398 PB1_Joka2 The PB1 doma 41.8 91 0.002 24.4 5.8 40 160-199 7-52 (91)
275 cd01766 Ufm1 Urm1-like ubiquit 41.3 95 0.0021 23.1 5.3 61 166-226 19-80 (82)
276 PF14847 Ras_bdg_2: Ras-bindin 41.1 68 0.0015 25.9 5.1 36 3-38 3-38 (105)
277 TIGR03027 pepcterm_export puta 41.0 2.4E+02 0.0053 24.5 11.3 50 287-338 1-57 (165)
278 PF02505 MCR_D: Methyl-coenzym 40.5 2.4E+02 0.0052 24.4 8.4 108 171-292 12-124 (153)
279 PRK06347 autolysin; Reviewed 40.1 1.8E+02 0.0038 31.4 9.4 211 89-342 331-569 (592)
280 PTZ00380 microtubule-associate 39.7 35 0.00076 28.3 3.2 44 167-210 45-88 (121)
281 PF14807 AP4E_app_platf: Adapt 39.5 80 0.0017 25.5 5.2 64 393-457 23-90 (104)
282 cd06398 PB1_Joka2 The PB1 doma 39.4 89 0.0019 24.5 5.4 41 236-276 7-53 (91)
283 cd06410 PB1_UP2 Uncharacterize 39.1 88 0.0019 24.9 5.4 39 6-45 18-56 (97)
284 PF00788 RA: Ras association ( 38.8 1.2E+02 0.0027 23.0 6.3 33 164-196 18-52 (93)
285 PF06234 TmoB: Toluene-4-monoo 38.7 1.7E+02 0.0036 22.7 6.5 58 394-451 18-83 (85)
286 PRK11130 moaD molybdopterin sy 38.7 1.6E+02 0.0034 22.2 6.7 52 172-228 25-81 (81)
287 cd01787 GRB7_RA RA (RAS-associ 38.5 1.1E+02 0.0024 23.7 5.5 38 79-116 5-42 (85)
288 cd01611 GABARAP Ubiquitin doma 38.4 1.2E+02 0.0027 24.7 6.3 75 73-147 21-105 (112)
289 PF02991 Atg8: Autophagy prote 37.9 1.1E+02 0.0024 24.6 5.9 59 394-452 36-98 (104)
290 PRK07696 sulfur carrier protei 37.6 1.6E+02 0.0035 21.4 7.2 61 161-228 6-67 (67)
291 cd06397 PB1_UP1 Uncharacterize 37.3 1.2E+02 0.0025 23.2 5.4 39 160-198 7-45 (82)
292 cd01775 CYR1_RA Ubiquitin doma 37.2 1.3E+02 0.0028 23.9 5.9 37 160-196 10-47 (97)
293 PF14451 Ub-Mut7C: Mut7-C ubiq 37.1 1.2E+02 0.0026 23.2 5.7 53 238-299 22-75 (81)
294 PF11069 DUF2870: Protein of u 37.0 33 0.00072 27.1 2.6 18 118-135 3-20 (98)
295 smart00314 RA Ras association 36.4 63 0.0014 24.8 4.2 37 2-38 6-43 (90)
296 cd01787 GRB7_RA RA (RAS-associ 35.6 1.4E+02 0.003 23.1 5.7 43 231-273 5-47 (85)
297 cd06397 PB1_UP1 Uncharacterize 35.4 77 0.0017 24.2 4.2 40 235-274 6-45 (82)
298 PF00276 Ribosomal_L23: Riboso 34.7 80 0.0017 24.7 4.5 42 391-432 21-63 (91)
299 KOG4146 Ubiquitin-like protein 34.5 2.3E+02 0.0049 22.3 7.3 57 399-456 34-101 (101)
300 PRK05738 rplW 50S ribosomal pr 33.1 1.1E+02 0.0024 24.0 5.1 41 390-430 20-61 (92)
301 KOG0007 Splicing factor 3a, su 32.9 19 0.00041 35.8 0.8 50 83-132 289-339 (341)
302 TIGR03260 met_CoM_red_D methyl 32.7 3.2E+02 0.007 23.5 8.2 104 171-287 11-118 (150)
303 PRK15078 polysaccharide export 32.5 5.4E+02 0.012 26.0 18.8 209 208-449 82-344 (379)
304 PRK08453 fliD flagellar cappin 31.9 1.4E+02 0.0031 32.5 7.2 86 235-321 134-236 (673)
305 KOG2689 Predicted ubiquitin re 31.7 1.2E+02 0.0026 28.9 5.7 70 229-298 211-285 (290)
306 cd01816 Raf_RBD Ubiquitin doma 31.4 2.1E+02 0.0045 21.5 5.8 42 383-424 2-43 (74)
307 cd06410 PB1_UP2 Uncharacterize 31.3 1.8E+02 0.004 23.0 6.0 40 81-121 17-56 (97)
308 cd01776 Rin1_RA Ubiquitin doma 31.1 85 0.0018 24.0 3.8 43 393-435 16-63 (87)
309 KOG0007 Splicing factor 3a, su 30.6 23 0.0005 35.2 1.0 51 159-209 289-340 (341)
310 PF10787 YfmQ: Uncharacterised 30.3 1.7E+02 0.0037 24.9 5.8 90 168-257 20-123 (149)
311 PF03671 Ufm1: Ubiquitin fold 30.2 1.9E+02 0.0041 21.6 5.3 58 165-222 18-76 (76)
312 PRK11840 bifunctional sulfur c 29.9 2.1E+02 0.0045 28.2 7.3 61 161-228 6-66 (326)
313 cd01776 Rin1_RA Ubiquitin doma 29.6 88 0.0019 24.0 3.6 42 316-357 15-61 (87)
314 COG0299 PurN Folate-dependent 29.4 91 0.002 28.2 4.4 46 286-337 126-172 (200)
315 PF14085 DUF4265: Domain of un 29.1 2.2E+02 0.0049 23.3 6.5 55 280-336 17-76 (117)
316 PRK11130 moaD molybdopterin sy 28.9 2.5E+02 0.0055 21.1 7.2 57 395-456 19-81 (81)
317 PF10407 Cytokin_check_N: Cdc1 28.8 2.4E+02 0.0053 21.1 5.9 60 391-453 3-71 (73)
318 PF03671 Ufm1: Ubiquitin fold 28.3 2.1E+02 0.0046 21.3 5.3 57 394-450 19-76 (76)
319 KOG2507 Ubiquitin regulatory p 28.3 1.2E+02 0.0026 30.7 5.4 78 151-228 313-395 (506)
320 PF02192 PI3K_p85B: PI3-kinase 27.9 79 0.0017 24.0 3.3 22 89-110 2-23 (78)
321 cd06404 PB1_aPKC PB1 domain is 27.5 1.3E+02 0.0028 23.2 4.3 63 236-298 7-79 (83)
322 COG0299 PurN Folate-dependent 27.3 1.1E+02 0.0024 27.7 4.5 48 58-111 126-174 (200)
323 cd01612 APG12_C Ubiquitin-like 27.1 2.9E+02 0.0062 21.4 6.4 59 394-452 19-81 (87)
324 TIGR00038 efp translation elon 26.1 1E+02 0.0022 27.6 4.3 81 8-95 44-126 (184)
325 PF11816 DUF3337: Domain of un 25.9 1.9E+02 0.0041 28.6 6.5 63 393-455 250-330 (331)
326 cd01775 CYR1_RA Ubiquitin doma 25.6 2.4E+02 0.0052 22.4 5.6 40 233-272 7-47 (97)
327 KOG2561 Adaptor protein NUB1, 25.5 61 0.0013 33.0 2.8 56 167-222 54-109 (568)
328 PF02824 TGS: TGS domain; Int 25.2 2.3E+02 0.005 20.0 5.2 59 383-450 1-59 (60)
329 PF14847 Ras_bdg_2: Ras-bindin 25.2 1.7E+02 0.0037 23.6 4.9 45 383-427 3-50 (105)
330 cd01766 Ufm1 Urm1-like ubiquit 25.1 3E+02 0.0064 20.6 6.7 63 394-456 19-82 (82)
331 PRK12426 elongation factor P; 24.6 68 0.0015 28.8 2.8 81 8-95 45-127 (185)
332 PF02017 CIDE-N: CIDE-N domain 24.6 2.7E+02 0.0058 21.2 5.5 49 173-224 21-71 (78)
333 PF08825 E2_bind: E2 binding d 24.0 1.5E+02 0.0033 22.8 4.3 56 167-223 1-70 (84)
334 PF04023 FeoA: FeoA domain; I 22.8 1.4E+02 0.0031 21.7 3.9 38 206-244 26-63 (74)
335 PF02991 Atg8: Autophagy prote 22.8 2.8E+02 0.0061 22.3 5.8 75 74-148 14-98 (104)
336 TIGR03636 L23_arch archaeal ri 22.5 2.1E+02 0.0045 21.7 4.6 33 391-423 15-47 (77)
337 KOG3076 5'-phosphoribosylglyci 22.4 1.3E+02 0.0029 27.0 4.0 43 63-111 140-182 (206)
338 smart00143 PI3K_p85B PI3-kinas 21.5 1.1E+02 0.0023 23.3 2.9 22 89-110 2-23 (78)
339 KOG3483 Uncharacterized conser 21.1 3.6E+02 0.0079 20.2 5.6 60 167-226 31-91 (94)
340 PF00276 Ribosomal_L23: Riboso 21.0 1.9E+02 0.004 22.6 4.3 39 163-201 21-60 (91)
341 COG5100 NPL4 Nuclear pore prot 21.0 3.2E+02 0.0069 27.6 6.7 69 154-223 2-78 (571)
342 PF09469 Cobl: Cordon-bleu ubi 20.8 72 0.0016 24.1 1.8 35 181-215 2-39 (79)
343 PF13180 PDZ_2: PDZ domain; PD 20.8 1.4E+02 0.003 22.3 3.6 57 391-455 15-73 (82)
344 PRK00529 elongation factor P; 20.7 1.8E+02 0.0038 26.2 4.7 81 8-95 45-127 (186)
345 COG0089 RplW Ribosomal protein 20.4 2E+02 0.0044 22.7 4.3 40 389-428 20-60 (94)
346 cd01782 AF6_RA_repeat1 Ubiquit 20.2 2.1E+02 0.0045 23.2 4.4 36 1-36 24-61 (112)
347 KOG4147 Uncharacterized conser 20.0 78 0.0017 25.5 1.9 22 353-374 89-111 (127)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=3.4e-20 Score=149.65 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=92.4
Q ss_pred cccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC
Q 012713 362 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 441 (458)
Q Consensus 362 ~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i 441 (458)
.+++.+-+++|++.++++.|+|+||+.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC
Q 012713 442 QKESTLHLVLRLRGG 456 (458)
Q Consensus 442 ~~~~~i~~~~~~~~g 456 (458)
++|++||++++.+||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999987
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=6.1e-20 Score=148.17 Aligned_cols=99 Identities=41% Similarity=0.597 Sum_probs=93.9
Q ss_pred CCCccccccccccccceeEeecCCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcch
Q 012713 53 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (458)
Q Consensus 53 ~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl 132 (458)
.+....+++.+-+++|+.+++.+.|+|+|++++|+.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (103)
T cd01802 4 KKEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCL 83 (103)
T ss_pred ccCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeEEEEeec
Q 012713 133 ADYNIQKESTLHLVLRLRG 151 (458)
Q Consensus 133 ~~y~i~~~s~i~l~~~~~~ 151 (458)
++|+|.++++||++++.++
T Consensus 84 ~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 84 NDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred HHcCCCCCCEEEEEEecCC
Confidence 9999999999999988765
No 3
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.7e-21 Score=149.93 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|++|++++.|+|++++++|||||+++|.+|++++|||+++|+|+|+|++|+|++|+++|+|+..+|+|+++++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998877
No 4
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.4e-19 Score=150.75 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=74.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|||+++.|++++++++++|||+++|.|||+++|||+++|+|+|.|++|+|+++++||+|+..+|+||+++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998876
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.77 E-value=6.2e-19 Score=134.61 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.76 E-value=1e-18 Score=133.40 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|||||++. ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++++|+++++.++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 899999999999999999999999999999999999999999999999999999999999987653
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=3.2e-18 Score=131.62 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|||++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988765
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=2.7e-18 Score=131.74 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcE-EEEE-ecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|+|||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999998864
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.74 E-value=8e-18 Score=128.42 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+||+. ++++++|+|++||+++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|+++++||++++.+||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 688999999999999999999999999999999999999999999999999999999999999987
No 10
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.73 E-value=1.3e-17 Score=127.28 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=70.9
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
|+|+||+.+|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998874
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.73 E-value=1.7e-17 Score=127.47 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+||+.+|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887
No 12
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.72 E-value=2.6e-17 Score=126.29 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=71.4
Q ss_pred eeEEEEcCCCcE-EEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 381 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 381 ~~i~vk~~~g~~-~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
|+|+||+.+|+. +.++ +++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|..+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 789999999997 6895 89999999999999999999999999999999999999999999999999999998754
No 13
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=1.2e-17 Score=127.48 Aligned_cols=73 Identities=32% Similarity=0.597 Sum_probs=70.6
Q ss_pred EEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|||+++.|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|.+++++++.+++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988654
No 14
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=3.6e-17 Score=124.82 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.1
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+||+++|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|.|+++|++|+|+++++++++.+..||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887
No 15
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.9e-18 Score=115.92 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccccccccccee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~ 70 (458)
|.|-|++++|+.+.++++|.|+|+.+|++|++++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999984
No 16
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=6e-17 Score=124.57 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=73.7
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+|+|++..|+.+.++|++++||++||++|+++.++++++|+|+|+|+.|+|+ +|++||+++|++||++...++|
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999998887
No 17
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.70 E-value=7.4e-17 Score=124.03 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+|++.+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+++|++|++++|++||++.+.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 18
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.70 E-value=7.5e-17 Score=121.75 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.8
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|.|+|++..|+.+.++|+|++||++||++|++..|+|+++|||+|+|+.|+|+.+|++|+|++|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999864
No 19
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.69 E-value=1.2e-16 Score=122.90 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+|++.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.68 E-value=9.8e-17 Score=123.34 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=72.8
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++++|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|++.+++++|+.++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988665
No 21
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.68 E-value=9.8e-17 Score=123.35 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.3
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 22
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=8e-17 Score=121.59 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.3
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccccccccccee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~ 70 (458)
|.|+|+++.|+++.+++++++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|++.+++++||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 23
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.67 E-value=3.2e-16 Score=120.79 Aligned_cols=74 Identities=38% Similarity=0.692 Sum_probs=71.6
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
|+|+|++.+|+.+.++|++++||.+||++|++..|+ |+++|+|+|+|+.|+|+.+|++|++++|++|+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999999 99999999999999999999999999999999998865
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.67 E-value=2.1e-16 Score=118.61 Aligned_cols=69 Identities=36% Similarity=0.575 Sum_probs=66.6
Q ss_pred EEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 384 ~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
.||..+|+.+.++|++++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~ 70 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN 70 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999873
No 25
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.67 E-value=9e-17 Score=121.27 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.8
Q ss_pred EEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEe
Q 012713 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|||++++|+++++++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999753
No 26
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.66 E-value=3e-16 Score=118.40 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
|+||+.+|+.+.++|++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999999999999999998764
No 27
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.65 E-value=1.6e-16 Score=119.14 Aligned_cols=67 Identities=37% Similarity=0.606 Sum_probs=65.1
Q ss_pred EEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeE
Q 012713 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~ 71 (458)
|++++|++++++|++++||.++|++|++++|+|+.+|+|+|+|+.|+|+.++.+|+|.+++++|+.+
T Consensus 3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred EEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 6889999999999999999999999999999999999999999999999999999999999999875
No 28
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.65 E-value=3.9e-16 Score=118.25 Aligned_cols=72 Identities=25% Similarity=0.267 Sum_probs=64.9
Q ss_pred ceeEEEEcCCCcEE--EEEecCCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCccccC--CCCCCEEEEEE
Q 012713 380 GMQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 451 (458)
Q Consensus 380 ~~~i~vk~~~g~~~--~i~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tl~~~~--i~~~~~i~~~~ 451 (458)
++.++||+++++.+ .+++++++||++||++|++..+ .++++|+|||+||+|+|++||++|. +++|.+||+++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 47899999999985 4555899999999999999875 5689999999999999999999996 99999999986
No 29
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.64 E-value=2.8e-16 Score=120.88 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=72.1
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++..|+++++++++++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|++.++++++++..++++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999 9999999999999999887654
No 30
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.1e-17 Score=127.48 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=72.9
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEEEEeecCc
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~~~~ 304 (458)
+.+++++..|+|+++++++++||.+||++|++.+|||+++|+|+|+|+.|+|++|+++||++..||+|+..++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999988776
No 31
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.64 E-value=5.5e-16 Score=119.44 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCC--CCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gi--p~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++.+|+++++++.+++||.++|++|++..|+ |+++|+|+|+|+.|+|+.+|++|++.+++++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999988753
No 32
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-16 Score=108.64 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.9
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
|.|.|++++|+.+.++++|+++|+.+|+.++++.|+||.+|||+|.|+.+.|+.|-++|++..|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999974
No 33
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.63 E-value=9.5e-16 Score=118.70 Aligned_cols=74 Identities=32% Similarity=0.455 Sum_probs=71.4
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE--EEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L--i~~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
+|+|+|++.+|+.+.+++++++||.+||++|++..|+|+++|+| +|+|+.|+|+.+|++||+++|++|++++++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 38999999999999999999999999999999999999999999 999999999999999999999999999985
No 34
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.62 E-value=1.3e-15 Score=114.77 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.4
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 386 k~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
|+++|+.|.++|++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|+|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 678999999999999999999999999999999999999999999999999999999999999988764
No 35
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=8e-16 Score=116.90 Aligned_cols=71 Identities=44% Similarity=0.692 Sum_probs=69.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeE
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~ 71 (458)
|+|+|++++|+++++++++++||.++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999875
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=2.1e-15 Score=114.58 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
|+|+||+++|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++||++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999998764
No 37
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.9e-16 Score=131.06 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=73.5
Q ss_pred eEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEeecc
Q 012713 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (458)
|+|+|+++.|+++++++++++||..+|.+|++.+|||+++|+|+|+|++|+|+++|+||+|+..+++||+++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999987765
No 38
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.61 E-value=2.3e-15 Score=113.88 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
++|+||+.+|+ ..+++++++||.+||++|++..|+++++|+|+|+|+.|+|+++|++||+++|++||++.|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 47899999997 589999999999999999999999999999999999999999999999999999999864
No 39
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.60 E-value=1.3e-15 Score=117.99 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEE--EEeceeccCCCCccccccccccccceeEe
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l--~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|+|+|++.+|+++++++++++||.+||++|++..|+|+++|+| +|+|+.|+|+.+|++|++.++++++++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 7899999999999999999999999999999999999999999 89999999999999999999999999886
No 40
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.59 E-value=2.1e-15 Score=114.11 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEe
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|.|+|++.+|+ .++++++++||.+||++|+++.|+|+.+|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 499999999999999999999999999999999999999999999999999999999864
No 41
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.59 E-value=1.1e-14 Score=114.42 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=76.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+..|.|.|++.+|+.+.++|.+++++..||++++++.|+|+++|+|+|+|+.|.++.|+++|++++||+|+++++.+||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999998
No 42
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=5.6e-15 Score=113.17 Aligned_cols=70 Identities=33% Similarity=0.669 Sum_probs=67.2
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
++|+.+.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++||++.+.+||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999998873
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.57 E-value=6.3e-15 Score=111.21 Aligned_cols=67 Identities=36% Similarity=0.561 Sum_probs=64.0
Q ss_pred EEEEcC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEE
Q 012713 383 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHL 449 (458)
Q Consensus 383 i~vk~~-~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tl~~~~i~~~~~i~~ 449 (458)
|+||+. +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+ .+|++|++++|++||+
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 578999 899999999999999999999999999999999999999999987 6899999999999986
No 44
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.56 E-value=4.3e-15 Score=112.12 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.6
Q ss_pred EEEEcC-CCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCC-CCcccccccccccccee
Q 012713 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (458)
Q Consensus 3 i~~~~~-~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~ 70 (458)
|+|++. +|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .++++|++.+++++||.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999874
No 45
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.54 E-value=2.1e-14 Score=108.08 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.0
Q ss_pred EecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEee
Q 012713 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (458)
Q Consensus 82 k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (458)
|+++|+.++++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.++++|++..+++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999999999999999999999999999999999999999999999988653
No 46
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.53 E-value=1.1e-14 Score=110.41 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.8
Q ss_pred CeEEEEcCCCcE--EEEEecCCccHHHHHHHhhcccC--CCCCceEEEEeceeccCCCCccccc--cccccccceeE
Q 012713 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (458)
Q Consensus 1 ~~i~~~~~~g~~--~~~~v~~~dtv~~~K~~i~~~~g--ip~~~q~l~~~g~~L~d~~tl~~y~--i~~~sti~l~~ 71 (458)
|.++|++++|++ |++++++++||.++|++|.+..+ .|+++|+|+|.|+.|+|+.||++|. +.++.++||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 578999999999 55666899999999999998874 5589999999999999999999995 99999999974
No 47
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.53 E-value=1.1e-14 Score=111.47 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=65.9
Q ss_pred CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
++|+++++++++++||.+||++|+...|+|+++|+|+|+|+.|+|+++|++|++.+++++|++++.+++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999887653
No 48
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.51 E-value=4.4e-14 Score=111.05 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++.+|++++++|.+++|+..||++++++.|+|+++|+|+|+|+.|.++.|+.+|++.++++|++++++.++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999887653
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.51 E-value=5.3e-14 Score=106.52 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.7
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|+|+||+. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|.|+.+|++|++++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899997 99999999999999999999999999999999999999999999999999999999998863
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.45 E-value=3.2e-13 Score=102.50 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE---cCeecCCCCCccccCCCCCCEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~---~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
|.|+||. .|+.|.++|++++||++||++|++..|+|+++|+|+| .|+.|+|+.+|++|++++|+.|+++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4677776 5788999999999999999999999999999999997 9999999999999999999999876
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.44 E-value=3.2e-13 Score=102.25 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.2
Q ss_pred eEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEE
Q 012713 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (458)
|+|+||+. |+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899986 99999999999999999999999999999999999999999999999999999999998863
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.43 E-value=3.4e-13 Score=102.31 Aligned_cols=70 Identities=23% Similarity=0.413 Sum_probs=65.1
Q ss_pred eEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEe---cCeecCCCcchhhcccccccceeEEE
Q 012713 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~---~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (458)
|.|.|| ++|+.++++|++++||++||++|++.+|+|+++|+|+| .|+.|.|+.+|++|++.+|+.|+|+-
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 467787 78999999999999999999999999999999999996 89999999999999999999998863
No 53
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=3.3e-13 Score=133.27 Aligned_cols=74 Identities=30% Similarity=0.588 Sum_probs=71.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC---CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~---~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
|+|+||+++|++|.++|++++||.+||++|++..| +++++|+|||+||+|+|+++|++|+|+++++|+++++++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 78999999999999999999999999999999998 999999999999999999999999999999999998764
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.42 E-value=3.2e-13 Score=102.53 Aligned_cols=70 Identities=29% Similarity=0.380 Sum_probs=62.8
Q ss_pred CeEEEEc--CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceecc-CCCCccccccc-cccccceeE
Q 012713 1 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (458)
Q Consensus 1 ~~i~~~~--~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~-d~~tl~~y~i~-~~sti~l~~ 71 (458)
+.++|+. ..|.+++++|.+++||.+||++|+++.|+|+++|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 1 ~~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 1 LNVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred CEEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3567776 578999999999999999999999999999999999 9999985 66999999998 779999864
No 55
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.37 E-value=7.8e-13 Score=98.73 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=49.6
Q ss_pred ecC-CCcHHHHHHHHHhhc--CC-CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 397 VES-SDTIDNVKAKIQDKE--GI-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 397 v~~-~~tV~~lK~~i~~~~--~~-~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|+| ++||.+||++|+++. |+ ++++|+|||+|+.|+|++||++|+|++|++||++.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 444 679999999999996 46 59999999999999999999999999999999865
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.37 E-value=1.7e-12 Score=95.95 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~ 445 (458)
|+|+|++.+ +.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|.|+.+|++|++++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999998 7889999999999999999999999999999999999999999999999999885
No 57
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.36 E-value=2.5e-12 Score=97.67 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=59.4
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecC-CCCCccccCCC-CCCEEEEEE
Q 012713 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 451 (458)
Q Consensus 386 k~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~-d~~tl~~~~i~-~~~~i~~~~ 451 (458)
+...|.++.++|+|++||++||++|++++|+|++.|+| |+|+.|. |+.+|++|+++ +|+++|+.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 44568899999999999999999999999999999999 9999985 77999999998 889999864
No 58
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.34 E-value=1.8e-12 Score=95.82 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccccccc
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~s 65 (458)
|+|+|++.+ +++.++|++++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999999 7999999999999999999999999999999999999999999999999998875
No 59
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.34 E-value=2.9e-12 Score=92.75 Aligned_cols=74 Identities=27% Similarity=0.382 Sum_probs=68.8
Q ss_pred eeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEec---C--eecCCCCCcccccccCCCeEEEEEeecC
Q 012713 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLRG 379 (458)
Q Consensus 305 ~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~---g--~~L~~~~~l~~y~I~~~~~l~l~~~~~~ 379 (458)
++|.|+.+.+..+++.|+|+.+|+.+|++|...+|++- .|+|.|+ | +.|.+.++||+|||+++-.|.|+.+.|+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p~ 79 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFPP 79 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCCC
Confidence 47899999999999999999999999999999999988 9999997 2 7888899999999999999999988765
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.34 E-value=7.2e-13 Score=98.92 Aligned_cols=52 Identities=33% Similarity=0.590 Sum_probs=48.8
Q ss_pred CccHHHHHHHhhcc--cCCC-CCceEEEEeceeccCCCCccccccccccccceeE
Q 012713 20 SDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 20 ~dtv~~~K~~i~~~--~gip-~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~ 71 (458)
++||.++|++|+++ +|+| +++|+|+|.|++|+|++||++|+|.+++++||+.
T Consensus 20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 79999999999999 5675 9999999999999999999999999999999974
No 61
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.33 E-value=2.1e-12 Score=127.26 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=70.8
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
.++|+||+.++ ++.+.|..+.||.+||++|+..++.++++++|||.||+|+|++||..|||+||.+||+++|..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47999999999 689999999999999999999999999999999999999999999999999999999999854
No 62
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.31 E-value=2e-12 Score=102.99 Aligned_cols=76 Identities=28% Similarity=0.401 Sum_probs=66.1
Q ss_pred CCeEEEEEecCCcEE-EEEEcCCCCHHHHHHHHh-----HHhCCC--CCCeEEEecCeecCCCcchhhcc------cccc
Q 012713 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~-----~~~gip--~~~Q~L~~~g~~L~d~~tl~~y~------i~~~ 140 (458)
+.+.|.++..+|..+ +..+++++||.+||++|+ +++|+| +++|+|||+|++|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 456788888899775 678899999999999999 555666 99999999999999999999999 7777
Q ss_pred cceeEEEEee
Q 012713 141 STLHLVLRLR 150 (458)
Q Consensus 141 s~i~l~~~~~ 150 (458)
.|+|+++++.
T Consensus 83 ~TmHvvlr~~ 92 (113)
T cd01814 83 ITMHVVVQPP 92 (113)
T ss_pred eEEEEEecCC
Confidence 8999999864
No 63
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.31 E-value=3.5e-12 Score=119.51 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=72.1
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
|+|+||++.+++|++++.|++||.++|++|+...| +|++.|+|||+|++|+|+.++.+|+++++++|.+|+.++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 78999999999999999999999999999999999 899999999999999999999999999999999999876
No 64
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=3.1e-12 Score=126.40 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccC---CCCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~g---ip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+||++.|++++|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|.+|+|.+++++++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999988753
No 65
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.29 E-value=2.1e-12 Score=102.87 Aligned_cols=73 Identities=29% Similarity=0.414 Sum_probs=63.5
Q ss_pred eEEEEcCCCcEE-EEEecCCccHHHHHHHhh-----cccCCC--CCceEEEEeceeccCCCCccccc------ccccccc
Q 012713 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (458)
Q Consensus 2 ~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i~-----~~~gip--~~~q~l~~~g~~L~d~~tl~~y~------i~~~sti 67 (458)
.|-|+..+|.-+ +..+.++|||.+||++|+ +++|+| +++|+|+|+|+.|+|++||++|+ +...+|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 456777788544 478889999999999999 566677 99999999999999999999999 8889999
Q ss_pred ceeEeec
Q 012713 68 HLVLRLR 74 (458)
Q Consensus 68 ~l~~~~~ 74 (458)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999765
No 66
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.20 E-value=5.8e-11 Score=89.05 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.8
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 385 vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|+..+|+.+.++++++.||++||++|++..|+|++.|+|+|+|+.|+|..+|++|++.+|+.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998864
No 67
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.20 E-value=6.5e-11 Score=89.73 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|+|+|++.+|+.+.+.|.+++++..|++.++++.|+++ +.++|+|+|+.|++++|++++++++||+|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999999864
No 68
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.15 E-value=7.8e-11 Score=90.88 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=57.0
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeec-ccCccccccccCCCCEEEEEEEe
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L-~d~~tL~~~~i~~~s~i~l~~~~ 225 (458)
...++|++++||.+||.+|.+++++||++|+|+++|+.| +|.+||++||+.++|+|.|..+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 467889999999999999999999999999999999999 56789999999999999988753
No 69
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.10 E-value=1.3e-10 Score=89.74 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=57.5
Q ss_pred eEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCC-CCCcccccccCCCeEEEEEe
Q 012713 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 376 (458)
Q Consensus 316 ~~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~g~~L~~-~~~l~~y~I~~~~~l~l~~~ 376 (458)
..++.|++++||.++|..|++++++++..|+|.+.|+.|.| ..||.+|||.++++|+|..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 46788999999999999999999999999999999999998 88999999999999999864
No 70
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.07 E-value=1.8e-10 Score=108.11 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccC--CCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~g--ip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|.|+|||+.|.+|++++.|++||.++|.+|+...| .|+.+|+|+|+|+.|.|+.++.+|++..++-+-+.+.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999988877543
No 71
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.06 E-value=5.2e-10 Score=83.83 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.2
Q ss_pred EEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEE
Q 012713 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (458)
|+..+|+.+.+++++++||++||++|+...|+|++.|+|+|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6677899999999999999999999999999999999999999999999999999999999998764
No 72
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.06 E-value=6e-10 Score=84.29 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.2
Q ss_pred eEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
++++++..|+++++++.++++|..+|.+|..+.|+|+++|++.+.|+.|.|+.++.+|+|..++++++..+..
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999987654
No 73
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.03 E-value=3.1e-10 Score=112.22 Aligned_cols=74 Identities=36% Similarity=0.560 Sum_probs=70.1
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEe
Q 012713 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (458)
..++|+||+.+. .+.+.|..+.||.+||+.|...+++|+++++|||+||+|.|+.||..|+|.+|.||||+.+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 358899999988 88999999999999999999999999999999999999999999999999999999999864
No 74
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.01 E-value=1.7e-09 Score=81.94 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCC-CCeEEEecCeecCCCcchhhcccccccceeEEE
Q 012713 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (458)
|+|+|+..+|+.+.+.|.+++++..|+++++++.|+|+ +..+|+|.|+.|+++.|+++|++.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999999863
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.85 E-value=1.5e-08 Score=78.94 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=57.7
Q ss_pred eEEEEcCC-CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE-EEcCe-----ec-CCCCCccccCCCCCCEEEEEE
Q 012713 382 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK-----QL-EDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 382 ~i~vk~~~-g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L-i~~G~-----~L-~d~~tl~~~~i~~~~~i~~~~ 451 (458)
+|.|.... ....+.++++++||.+||++++..+|++++.|+| +|.|+ .| +|.++|++|++++|+.||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 44554433 3345666999999999999999999999999999 58888 45 688899999999999999853
No 76
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.81 E-value=4.2e-08 Score=74.02 Aligned_cols=73 Identities=84% Similarity=1.145 Sum_probs=68.6
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
+++++..|+.+.+++.+..+|..+|.+|+...|+++.+|++.+.|+.|.|+.++.+|+|..++.+++..+.++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 5677889999999999999999999999999999999999999999999999999999999999999887654
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.73 E-value=5.5e-08 Score=75.76 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.0
Q ss_pred eeEEEecc-CcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE-ecCe-----ec-ccCccccccccCCCCEEEEEE
Q 012713 154 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 154 ~i~v~~~~-g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~-----~L-~d~~tL~~~~i~~~s~i~l~~ 223 (458)
.|+|.... .......++++.||++||++++..+|+|+..|+|. |.|+ .| +|+.+|++||+++|.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 34454332 33445569999999999999999999999999995 7887 45 788899999999999999864
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.72 E-value=4.4e-08 Score=77.84 Aligned_cols=68 Identities=31% Similarity=0.455 Sum_probs=62.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC-------CCCCEEEEEEEecCCCC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGEF 458 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i-------~~~~~i~~~~~~~~g~~ 458 (458)
.++-+++.++.||.+||++|+.-...|+++|+|+-.+.+|+|++||+|||+ +..+++-+.+|...|.|
T Consensus 12 TTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 12 TTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred eEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 456688999999999999999999999999999988899999999999999 77999999999877876
No 79
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.72 E-value=4.3e-08 Score=77.90 Aligned_cols=74 Identities=30% Similarity=0.437 Sum_probs=62.4
Q ss_pred eeeEEEeccC-cEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCcccccccc-------CCCCEEEEEEE
Q 012713 153 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 224 (458)
Q Consensus 153 m~i~v~~~~g-~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i-------~~~s~i~l~~~ 224 (458)
|.+|+..... .++.+++.++.||.+||++|+.....|+++|+|+..+..|+|++||++||+ +...++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 3455554443 458899999999999999999999999999999988889999999999999 66788888877
Q ss_pred ec
Q 012713 225 LR 226 (458)
Q Consensus 225 ~~ 226 (458)
..
T Consensus 81 ~~ 82 (119)
T cd01788 81 SS 82 (119)
T ss_pred cC
Confidence 53
No 80
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.72 E-value=9.5e-08 Score=77.97 Aligned_cols=74 Identities=30% Similarity=0.498 Sum_probs=57.9
Q ss_pred ceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcC-------CCCCceEEEEcCeecCCCCCccccCCCCCC------
Q 012713 380 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 445 (458)
Q Consensus 380 ~~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~-------~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~------ 445 (458)
.+.+.++..+|+ .-.+..++++||.+||+.|..+.. ..++..||||.||.|+|+.||+++.+..|+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 467788888999 778999999999999999998753 246889999999999999999999987766
Q ss_pred EEEEEEEe
Q 012713 446 TLHLVLRL 453 (458)
Q Consensus 446 ~i~~~~~~ 453 (458)
++|++++.
T Consensus 82 vmHlvvrp 89 (111)
T PF13881_consen 82 VMHLVVRP 89 (111)
T ss_dssp EEEEEE-S
T ss_pred EEEEEecC
Confidence 68888864
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.63 E-value=1.6e-07 Score=73.85 Aligned_cols=69 Identities=26% Similarity=0.511 Sum_probs=56.3
Q ss_pred eEEEEcCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc----Ce----ecCCCCCccccCCCCCCEEEEE
Q 012713 382 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK----QLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 382 ~i~vk~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~----G~----~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
+|+|..... ...+.++++++||.+||.+++..+|+|++.|+|.+. |. ..+|.++|.+|++++|+.||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 556655544 478899999999999999999999999999999987 11 2357899999999999999875
No 82
>PLN02560 enoyl-CoA reductase
Probab=98.61 E-value=1.2e-07 Score=91.90 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=61.9
Q ss_pred eeEEEEcCCCcEE---EEEecCCCcHHHHHHHHHhhcCC-CCCceEEEEc---C----eecCCCCCccccCCCCCCEEEE
Q 012713 381 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~vk~~~g~~~---~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~~---G----~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
|+|+|+..+|+.+ +++++++.||++||++|+++.+. ++++|||++. | ..|+|+++|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6789998889886 79999999999999999999986 8999999983 4 4899999999999999999864
No 83
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.3e-08 Score=103.09 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=68.8
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
+++||+++.++.+|.|...+||.+||..|.++.+|+.+.|||||+|++|.|++++.+|+| +|-+|||+-|-.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 589999999999999999999999999999999999999999999999999999999999 999999987743
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.58 E-value=8.8e-08 Score=92.70 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=63.0
Q ss_pred CeEEEEcCCCcEE---EEEecCCccHHHHHHHhhcccCC-CCCceEEEEe---c----eeccCCCCccccccccccccce
Q 012713 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (458)
Q Consensus 1 ~~i~~~~~~g~~~---~~~v~~~dtv~~~K~~i~~~~gi-p~~~q~l~~~---g----~~L~d~~tl~~y~i~~~sti~l 69 (458)
|+|.|+..+|+.+ ++++++++||++||.+|+++.++ ++++|+|.+. | ..|.|+++|.+|++.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999998 89999999999999999999986 8999999983 4 3789999999999999998665
Q ss_pred e
Q 012713 70 V 70 (458)
Q Consensus 70 ~ 70 (458)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 85
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.52 E-value=4.2e-07 Score=71.42 Aligned_cols=70 Identities=27% Similarity=0.544 Sum_probs=55.3
Q ss_pred eeEEEeccC--cEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEec----C---eec-ccCccccccccCCCCEEEEEE
Q 012713 154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 154 ~i~v~~~~g--~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~----g---~~L-~d~~tL~~~~i~~~s~i~l~~ 223 (458)
.|+|..... ......++++.||++||.+++..+|+|++.|+|.+. + ..+ +|..+|.+||+.+|.+|++.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 455554433 477889999999999999999999999999999975 1 123 678999999999999998764
No 86
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.51 E-value=5.5e-07 Score=73.50 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.1
Q ss_pred CeEEEEEecCCc-EEEEEEcCCCCHHHHHHHHhHHhC-------CCCCCeEEEecCeecCCCcchhhccccccc------
Q 012713 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (458)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s------ 141 (458)
.+.|.++..+|+ ..++.+++++||.+||+.|...+. ..++..+|||.|+.|+|+.||++|.+..++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 456777778999 678999999999999999997541 124678999999999999999999987665
Q ss_pred ceeEEEEee
Q 012713 142 TLHLVLRLR 150 (458)
Q Consensus 142 ~i~l~~~~~ 150 (458)
++|+++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 577777653
No 87
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.50 E-value=6e-07 Score=65.44 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=62.9
Q ss_pred eEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEec---C--eecCCCcchhhcccccccceeEEEE
Q 012713 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 148 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~---g--~~L~d~~tl~~y~i~~~s~i~l~~~ 148 (458)
++|+|+...+.++++.|+|..+|.++|++|....|++- .|+|.|. | +.|.+..+|++|+|-.+-.|.|+.+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 47899999999999999999999999999999999987 9999986 2 4578999999999988777777654
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.4e-07 Score=100.49 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=69.4
Q ss_pred eEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
+|.|||++.++-++.|+..+||.++|+.|.++.+|+..+||++|+|+.|.|++++.+|+| +|.++||+-+++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 578999999999999999999999999999999999999999999999999999999999 999999998765
No 89
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.43 E-value=5.5e-07 Score=68.99 Aligned_cols=55 Identities=31% Similarity=0.410 Sum_probs=48.4
Q ss_pred EEe-cCCCcHHHHHHHHHhhcC-CCCCceEEE--EcCeecCCCCCccccCCCCCCEEEE
Q 012713 395 LEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 395 i~v-~~~~tV~~lK~~i~~~~~-~~~~~q~Li--~~G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
+++ +++.||.+||+.|++..+ +++++|+|. +.|+.|.|+.+|++||+++|++||+
T Consensus 16 ~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 16 LKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred cccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 444 488999999999999976 589999985 7899999999999999999999875
No 90
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.41 E-value=4.5e-07 Score=69.58 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=44.9
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc---Ceec--CCCCCccccCCCCCCEEEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~---G~~L--~d~~tl~~~~i~~~~~i~~ 449 (458)
.+.|-|.|++.+|.. .++++|++|+.+|+++|++..+++...|.|..+ ...| .++++|+++|++.||.|++
T Consensus 2 ~~~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 2 ASSMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ----EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred CccEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 357889999999874 799999999999999999999999998887543 2345 4778999999999999976
No 91
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.3e-06 Score=64.63 Aligned_cols=80 Identities=16% Similarity=0.399 Sum_probs=73.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+..+++.|+.-++....|.|..+.+...|++..+++.|++....|++|+|+.+++.+|.+++++++||.|.++..+.||.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 45577888887788889999999999999999999999999999999999999999999999999999999988887773
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.24 E-value=2.1e-06 Score=65.86 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=43.3
Q ss_pred cceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEec---Ceec--ccCccccccccCCCCEEEEE
Q 012713 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~---g~~L--~d~~tL~~~~i~~~s~i~l~ 222 (458)
..|-|.|++.+| ...+++++++|+.+|+++|++..++|.+.|.|..+ ...+ .++.+|+++|++.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 456777887765 67789999999999999999999999999988732 2344 57899999999999999764
No 93
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.21 E-value=4.1e-06 Score=64.12 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.9
Q ss_pred cCCCcHHHHHHHHHHHhC-CCccCeEEE--ecCeecccCccccccccCCCCEEEE
Q 012713 170 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 170 ~~~~tV~~LK~~I~~~~g-ip~~~q~L~--~~g~~L~d~~tL~~~~i~~~s~i~l 221 (458)
+++.||++||..|+...+ +++++|+|. +.|+.|.|+.+|++||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578999999999999876 589999996 8999999999999999999998865
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.17 E-value=9.5e-06 Score=58.51 Aligned_cols=66 Identities=45% Similarity=0.659 Sum_probs=60.2
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 386 k~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
+..++....+.+.++.|+.++|++++++.|.+++.+.|.++|..+.+...+.++++.+++.|++..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 334688889999999999999999999999999999999999999999999999999999998753
No 95
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.3e-06 Score=61.54 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=62.8
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
+++.+.+.-|+...+.+.+++||+++|+.|+++.|-.++...|--.+..++|.-+|++|.|.+|.-+.+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 3566777889999999999999999999999999999999888877889999999999999999877653
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.96 E-value=3.4e-05 Score=55.47 Aligned_cols=64 Identities=45% Similarity=0.670 Sum_probs=59.0
Q ss_pred ccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEE
Q 012713 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~ 223 (458)
.++....+.+.+..|+.++++.+..+.|++++.+.|.++|..+++...+.+|++.+++++++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3677888999999999999999999999999999999999999999988899999999998764
No 97
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=9e-05 Score=57.87 Aligned_cols=78 Identities=17% Similarity=0.437 Sum_probs=71.4
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCCe
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~ 229 (458)
-+.+.|+..++....+.|..++....|+..-+++.|++.+..|+.|+|+.+.+..|-++.++.+|+.|.++....+|.
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 356677777788889999999999999999999999999999999999999999999999999999999998877764
No 98
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4.4e-05 Score=71.41 Aligned_cols=70 Identities=30% Similarity=0.598 Sum_probs=61.3
Q ss_pred eEEEEcC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 382 QIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 382 ~i~vk~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
.+.|++. ....+.++|+.+.+|.+||+.++...|+|+++.++||.||+|.|+.|+..+.+..-+++|++.
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 3445443 334688999999999999999999999999999999999999999999999998889999873
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4.2e-05 Score=71.56 Aligned_cols=72 Identities=31% Similarity=0.592 Sum_probs=62.0
Q ss_pred EEEEEec---CCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEE-EEe
Q 012713 78 QIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (458)
Q Consensus 78 ~i~vk~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~-~~~ 149 (458)
.+.|+.. ....++++|+.+..|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-|.+|++ +||
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 3445433 33468899999999999999999999999999999999999999999999999988998887 454
No 100
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.9e-05 Score=55.79 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=61.3
Q ss_pred eeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEE
Q 012713 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~ 222 (458)
++.+...-|+...+.+.+++||+++|+.|+.+.|-.++...|--.+....|.-+|++|.|.+|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 344555668899999999999999999999999999999999888889999999999999999888764
No 101
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=4.3e-05 Score=57.88 Aligned_cols=80 Identities=16% Similarity=0.355 Sum_probs=72.0
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
...+.+.|-..+|.++.+.|..+.+...|.+..+++.|-..+..|++|+|+.++-++|..|+++++++.|.++..+-||+
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 33466777777889999999999999999999999999999999999999999999999999999999998877777775
No 102
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.51 E-value=0.00012 Score=56.21 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=52.4
Q ss_pred CeEEEEcCCC-cEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEec--eeccCCCCcccccc
Q 012713 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNI 61 (458)
Q Consensus 1 ~~i~~~~~~g-~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g--~~L~d~~tl~~y~i 61 (458)
|.+|++...- .++.+..+++.||.++|+++..-..=|++.|+|+-.. ..|+|++||.|++.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 6788887544 4777999999999999999998888899999999843 45899999999964
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.46 E-value=0.00031 Score=51.36 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.4
Q ss_pred ccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEE
Q 012713 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (458)
Q Consensus 235 ~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l 297 (458)
..++++..+.+.++.++.++-++.|.++|++++.+.|.|+++.++-+-+++..|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467899999999999999999999999999999999999999999999999999999998865
No 104
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.43 E-value=0.00018 Score=55.25 Aligned_cols=54 Identities=30% Similarity=0.394 Sum_probs=47.3
Q ss_pred CcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEe-cC-eecccCccccccccCC
Q 012713 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK 215 (458)
Q Consensus 162 g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~-~g-~~L~d~~tL~~~~i~~ 215 (458)
..++.+..+++.||.+||.+++....-|+++|+|.. .. ..|+|.++|+++|...
T Consensus 11 kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 11 KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred ceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 346788999999999999999999999999999996 33 6789999999998765
No 105
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.11 E-value=0.002 Score=47.07 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.1
Q ss_pred eccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEE
Q 012713 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 159 ~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l 221 (458)
..+++...+.+.|++++.++-+...+++|+++++..|.|+++.|+-+-++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 356788999999999999999999999999999999999999999999999999999998865
No 106
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00089 Score=66.68 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=64.5
Q ss_pred EEEEEecCCcEEEEE-EcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEe
Q 012713 78 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (458)
Q Consensus 78 ~i~vk~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (458)
.|.|| ..|+.++++ ++.++|+..+|.++...+|+||++|++.+.|..+.|+-.+....|+++.+++++...
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 46665 788999888 999999999999999999999999999999999999988888999999999998753
No 107
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0014 Score=65.30 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=63.3
Q ss_pred eEEEEcCCCcEEEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 382 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
.|.||. .|+.|.++ ++.++|+..||+++.+.+|++|++|++.+.|..+.|+-.+....|++|.+++++-..
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 455555 47788888 999999999999999999999999999999999999988999999999999887554
No 108
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.00 E-value=0.0017 Score=51.70 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=44.4
Q ss_pred EEEEcCCC-cEEEEEec--CCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCcccc
Q 012713 383 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 439 (458)
Q Consensus 383 i~vk~~~g-~~~~i~v~--~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tl~~~ 439 (458)
|+|++.++ ....+++. .+.||..||++|.+..+ ..-..+||||+|+.|.|...|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 44555542 33567777 78999999999999984 456789999999999999877654
No 109
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.96 E-value=0.0033 Score=54.35 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=54.9
Q ss_pred CeEEEEcCCC----cEEEEEecCCccHHHHHHHhhcccCCCCCce-EEEEe-ceecc--CCCCcccccccccc----ccc
Q 012713 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQKES----TLH 68 (458)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q-~l~~~-g~~L~--d~~tl~~y~i~~~s----ti~ 68 (458)
|+|||.++.| .++.+.+.++.||.+|+..|....++|...| .|++. ++.|. ++..+..+.-...+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 7999999999 6999999999999999999999999998884 56664 55663 34445555443332 344
Q ss_pred eeEeecC
Q 012713 69 LVLRLRG 75 (458)
Q Consensus 69 l~~~~~~ 75 (458)
+..++.|
T Consensus 81 l~~rl~G 87 (162)
T PF13019_consen 81 LSLRLRG 87 (162)
T ss_pred EEEeccC
Confidence 4444443
No 110
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.93 E-value=0.0024 Score=49.03 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=50.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---C---ceEEE-EcCeecCCCCCccccCCCCCCEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~---~---~q~Li-~~G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
++|+|...+|+.+.+.+..+-+|.+|...+.+..+.+. . .-.|. -+|..|++++||++++|.+|+.+++
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 56788887778899999999999999999999888533 2 23444 4699999999999999999999976
No 111
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.93 E-value=0.0066 Score=46.86 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=60.4
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCc-eEEE--EcCeecCCC--CCccccCCCCCCEEEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL 449 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~-q~Li--~~G~~L~d~--~tl~~~~i~~~~~i~~ 449 (458)
++...|.||.++|+.+.-...+++||.+|..-+......+... ..|+ |-.+.+.+. +||++.++.++++|++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 3457899999999999999999999999999999988776664 6675 457788755 5999999999999865
No 112
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.80 E-value=0.0038 Score=47.90 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=48.6
Q ss_pred eeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCcc------CeEEE-ecCeecccCccccccccCCCCEEEE
Q 012713 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~------~q~L~-~~g~~L~d~~tL~~~~i~~~s~i~l 221 (458)
.|+|...+|..+.+.++.+.+|++|...+.+..+.+.. ...|. -+|..|+++.+|+++||.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45666545688999999999999999999998876432 24555 6799999999999999999999876
No 113
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.63 E-value=0.014 Score=50.60 Aligned_cols=76 Identities=30% Similarity=0.533 Sum_probs=59.0
Q ss_pred eeEEEEcCCC----cEEEEEecCCCcHHHHHHHHHhhcCCCCCce-EEEE-cCeec--CCCCCccccCCCCCC----EEE
Q 012713 381 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKES----TLH 448 (458)
Q Consensus 381 ~~i~vk~~~g----~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q-~Li~-~G~~L--~d~~tl~~~~i~~~~----~i~ 448 (458)
|+|.|.+.+| .++.+.++++.||.+|+..|.+..+++...| .|.+ .|+.| .++..++++.-.+.+ .++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5789999999 5889999999999999999999999988874 4555 35555 455667776544443 677
Q ss_pred EEEEecCC
Q 012713 449 LVLRLRGG 456 (458)
Q Consensus 449 ~~~~~~~g 456 (458)
+..+..||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 78888887
No 114
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.61 E-value=0.014 Score=42.91 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=57.1
Q ss_pred eeEEE--EcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-----CCCceEEEEcCeecCCCCCccccCCCCCCEEEE
Q 012713 381 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGI-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~v--k~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~-----~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
|+|+| +..+|.+|.+.++.-.+++.|-..+.+...+ +-...+..-.++.|.+++.|.+|+|.+||.+.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 45555 6667999999999999999999888777663 225677888899999999999999999999865
No 115
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.59 E-value=0.0056 Score=48.72 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=44.7
Q ss_pred EEEEecC-CcEEEEEEc--CCCCHHHHHHHHhHHhC--CCCCCeEEEecCeecCCCcchhhc
Q 012713 79 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 135 (458)
Q Consensus 79 i~vk~~~-g~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~Q~L~~~g~~L~d~~tl~~y 135 (458)
|+|++.+ -.+++++++ ...||..||..|.+..+ ..-..++|+|+|+.|.|...|+.-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4555554 355778877 78999999999999873 445678899999999998777754
No 116
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.52 E-value=0.018 Score=44.41 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=59.4
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccC-eEEE--ecCeecccC--ccccccccCCCCEEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~~~i~~~s~i~l~ 222 (458)
...|.|+.++|+.+.-...+++||.+|...|......+... ..|. |-.+.+.++ .||++.|+.+.++|.+-
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 45678888999999999999999999999999888777665 7776 677787544 69999999999988763
No 117
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.36 E-value=0.028 Score=43.06 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=55.1
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEE--EcCeecCC-CCCccccCCCCCCEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 447 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li--~~G~~L~d-~~tl~~~~i~~~~~i 447 (458)
+..+|.||.++|+.+.-..+.++||++|.+-+....+- ......|. |-.+.|.| +.||.|.|+.+..++
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 35689999999999999999999999999999987643 33556665 55787764 679999999865444
No 118
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.28 E-value=0.024 Score=43.52 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=57.8
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeeccc---CccccccccCCCCEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~i~~~s~i~l 221 (458)
...|.|+.++|+.+.-....++|+.+|.+.|....+.+.....|. |-.+.+.+ +.||.+.|+.+.+++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 456788999999999999999999999999977667666677776 66777753 47999999998887765
No 119
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.19 E-value=0.048 Score=41.84 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=57.3
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE--EcCeecCC---CCCccccCCCCCCEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 449 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li--~~G~~L~d---~~tl~~~~i~~~~~i~~ 449 (458)
+..+|.||.++|+.+.-...+++|+.++.+-+....+.......|+ |-.+.+.+ ++||.+.++.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4568999999999999999999999999999966666655566665 44677764 47999999988888743
No 120
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0063 Score=46.37 Aligned_cols=74 Identities=15% Similarity=0.339 Sum_probs=65.1
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEe
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~ 225 (458)
.+.+.|...+|.++.+.+..+++...|....+.+.|=..+..|+.|+|+.++-++|.+++++.+++.|..+...
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQ 97 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQ 97 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHH
Confidence 35566666788899999999999999999999999999999999999999999999999999999887655433
No 121
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.01 Score=52.81 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=57.3
Q ss_pred cCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEE
Q 012713 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (458)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (458)
.+++.+.+.+...+|+.++|.+++..+|+.+..|+++|+|+.|-|...|.+|+|..++...+.
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 367888999999999999999999999999999999999999999999999999998665443
No 122
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.81 E-value=0.086 Score=40.07 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=52.6
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecCC---CCCccccCCCCCCEE
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLADYNIQKESTL 447 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d---~~tl~~~~i~~~~~i 447 (458)
..+|.||.++|+.+.-...+++||.+|.+-+.....- .....|+. -.+.+.| +.||.+.|+.++.++
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 3578999999999999999999999999999876543 45556654 4677754 789999999954443
No 123
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.73 E-value=0.11 Score=40.45 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=57.9
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC--eecC--------CCCCccccCCCCCCEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTL 447 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G--~~L~--------d~~tl~~~~i~~~~~i 447 (458)
++..+|.||.++|+.+.-....++||++|..-+.. .+..++...|+.+= +.+. .+.||.+.|+.+..++
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 45678999999999998999999999999999964 45566778888764 7775 3679999999988777
Q ss_pred EE
Q 012713 448 HL 449 (458)
Q Consensus 448 ~~ 449 (458)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 43
No 124
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.016 Score=51.58 Aligned_cols=64 Identities=28% Similarity=0.469 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCC--CEEEEEEE
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLVLR 452 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~--~~i~~~~~ 452 (458)
+++.|.+.+..-+|+.++|..+.+..|+++-.|+++|+|+.|-|...|..|+++.| -++.+.+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVl 220 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVL 220 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEec
Confidence 57778999999999999999999999999999999999999999999999999999 55544443
No 125
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.61 E-value=0.07 Score=40.82 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=55.1
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeeccc---CccccccccCCCCEEEE
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~i~~~s~i~l 221 (458)
..|.|+.++|+.+.-..+.++|+++|.+.|....+-+ ....|+ |-.+.+.+ +.||.+.|+.+..+|.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4677888999999999999999999999998765443 456666 77788853 58999999999888765
No 126
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0061 Score=58.00 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=56.4
Q ss_pred cCceeEEEEcCCCcE--EEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCC--CCCCEEEEEE
Q 012713 378 RGGMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNI--QKESTLHLVL 451 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~--~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tl~~~~i--~~~~~i~~~~ 451 (458)
.-+..+.||..+.+. ..|..+..+||++||..++..+.- -+.+|||+|+||.|.|..+|+|.=. +...+.||++
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 345667778887653 567777899999999999998763 3579999999999999999998743 2344555554
Q ss_pred E
Q 012713 452 R 452 (458)
Q Consensus 452 ~ 452 (458)
.
T Consensus 87 n 87 (391)
T KOG4583|consen 87 N 87 (391)
T ss_pred C
Confidence 3
No 127
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.47 E-value=0.095 Score=39.84 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=52.4
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeecc---cCccccccccCCCCEEEE
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~s~i~l 221 (458)
..|.|+.++|+.+.-....++|+.+|.+.|.....- .....|+ |-.+.+. .+.||.+.|+.+ +.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 357788899999999999999999999999876543 4556666 6677774 488999999994 44433
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.46 E-value=0.087 Score=49.88 Aligned_cols=108 Identities=17% Similarity=0.342 Sum_probs=77.1
Q ss_pred EEeecCCCcHHHHHHhhhcccCCCCCCeeEEec----C--eecCCCCCcccccccCCCeEEEEEeecC------------
Q 012713 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTLHLVLRLRG------------ 379 (458)
Q Consensus 318 ~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~----g--~~L~~~~~l~~y~I~~~~~l~l~~~~~~------------ 379 (458)
.+.|...++|.++-..|.+..|+|++..-+.|. + ..++.+.+++...+.+|++|.+....+.
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 377899999999999999999999988777776 3 5677799999999999999999985542
Q ss_pred --------ceeEEEEcC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE
Q 012713 380 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (458)
Q Consensus 380 --------~~~i~vk~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~ 425 (458)
.+.|.++.. ++..|++.++..+|-.+|-++|+++.+++|...||.-
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 156666553 3458999999999999999999999999999988753
No 129
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.34 E-value=0.18 Score=38.57 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=55.2
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE--EcCeecCC---CCCccccCCCCCCEEEE
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 449 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li--~~G~~L~d---~~tl~~~~i~~~~~i~~ 449 (458)
..+|.||.++|+.+.-..+.++|+.++.+-++...+-. ....|+ |-.|.+.+ ++||.+.|+.+.+++.+
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 45789999999999999999999999999998765432 445555 44777864 47999999999888854
No 130
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.00 E-value=0.13 Score=39.37 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=52.2
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCC-ccCeEEE--ecCeecc-cCccccccccCCCC
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLE-DGRTLADYNIQKES 217 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip-~~~q~L~--~~g~~L~-d~~tL~~~~i~~~s 217 (458)
..|-|+..+|+.+.-.+..++||++|.+.|....+-+ .....|. |-.+.|. ++.||.+.|+.+..
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 4678899999999999999999999999999876432 3456665 7778774 47899999998644
No 131
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.99 E-value=0.17 Score=38.90 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=58.5
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeec---ccCccccccccCCCCEEEEE
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~~~i~~~s~i~l~ 222 (458)
-+|.|+.++|+...-....++++++|...+.. .|.+++.+.|+ |--+.+ +.+.||.+.|+.+..+|.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46788999999999999999999999999998 67888989988 666666 34589999999999888664
No 132
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.77 E-value=0.2 Score=38.85 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=55.5
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeecc--------cCccccccccCCCCEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL 221 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~--------d~~tL~~~~i~~~s~i~l 221 (458)
..+|.|+.++|..+.-....++||++|...|.. .+-.++.+.|+ |--+.+. .+.||.+.|+.+..+|.+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 457788999999998889999999999999965 44556788888 4447775 367999999998887754
No 133
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.61 E-value=0.25 Score=37.90 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=57.6
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeecc---cCccccccccCCCCEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~s~i~l 221 (458)
..+|.|+.++|....-....++++++|...+... |.++..++|+ |--+.+. .+.||.+.|+.+..+|.+
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 3567888999999999999999999999999875 7777888888 6677763 357999999998888765
No 134
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.48 E-value=0.24 Score=36.59 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=54.5
Q ss_pred EEEEccCCceEEEEeeccchHHHHHHHHhhhhCCC--C---CceEEEeCCcccCCCCcccccccCCCCeEEE
Q 012713 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--P---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (458)
Q Consensus 231 i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip--~---~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l 297 (458)
+...+.+|.++-+.+....++..|-..+.+.+.+. + .+.+.+-+++.+.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 34567889999999999999999988887765432 2 3456777899999999999999999998764
No 135
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.01 E-value=0.11 Score=47.80 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=49.9
Q ss_pred eeEEEEcCCCc-EEE-EEecCCCcHHHHHHHHHhhc-CCCCCceEEEE----cCeecCCCCCccccCCCCCCEEEE
Q 012713 381 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~vk~~~g~-~~~-i~v~~~~tV~~lK~~i~~~~-~~~~~~q~Li~----~G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
|.|++...++. ..+ ...+...|+.|+++.+.++. .+.+..+|+-+ .|+.|.|+.+|++|+...|++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 56777666552 333 55677889999997777654 46664444443 599999999999999999988753
No 136
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.91 E-value=0.43 Score=36.36 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=42.2
Q ss_pred eEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEEE
Q 012713 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 240 ~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~ 298 (458)
.+...++-...+..||..++.+.++..+.+.+...+..|+++++|.+.+++-..++.++
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 34555666788999999999999999999999888877999999999999999998876
No 137
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=93.84 E-value=0.51 Score=44.66 Aligned_cols=122 Identities=17% Similarity=0.367 Sum_probs=83.2
Q ss_pred CCeEEEEEecCC--cEE----EEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecC------eecCCCcchhhcccccccc
Q 012713 75 GGMQIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKEST 142 (458)
Q Consensus 75 ~~~~i~vk~~~g--~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g------~~L~d~~tl~~y~i~~~s~ 142 (458)
+.+-|++|..+- +++ .+.|+.+++|.++-..|.++.|+|++...++|.- ..++...++....+.+|+.
T Consensus 67 ~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdI 146 (249)
T PF12436_consen 67 DDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDI 146 (249)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEE
T ss_pred CcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCE
Confidence 346677776532 232 3568999999999999999999999888888753 3468889999999999999
Q ss_pred eeEEEEee--------------------cceeeEEEec---cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE
Q 012713 143 LHLVLRLR--------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (458)
Q Consensus 143 i~l~~~~~--------------------~~m~i~v~~~---~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~ 196 (458)
|....... ..+.|.++.. .+..+.+.++...|-.+|-++|+++.+++|+..+|+
T Consensus 147 i~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 147 ICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 98876432 2355666542 345799999999999999999999999999999888
No 138
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.67 E-value=0.57 Score=35.99 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=57.7
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEe--CCccc---CCCCcccccccCCCCeEEEEE
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL---EDGRTLADYNIQKESTLHLVL 299 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~--~g~~l---~d~~tL~~~~i~~~~ti~l~~ 299 (458)
-.|.|+.++|.++.-.-..++++++|..-+.. .|.+++.+.|+. --+.+ +-+.||.+.|+.+..+|.+.-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 35778899999999999999999999999988 578889999984 33333 345899999999999988754
No 139
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=93.62 E-value=0.49 Score=36.72 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=45.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc----Ce-ecCCC-CCccccCCCCCCEEEEEEEecCCCC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK-QLEDG-RTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~----G~-~L~d~-~tl~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
...+-..+..|||..+.+.+.+.+.+ .++-||--. +. .|.+. .|+.+.++.+|-+|.+=.|..+|.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence 35678899999999999999999999 666776431 22 46554 6999999999999988888999987
No 140
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.39 E-value=0.16 Score=38.50 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=47.0
Q ss_pred ecCCCcHHHHHHHHHhhcC-CCCCceEEEEcCeecCCCCCcccc-CCCCCCEEEEEE
Q 012713 397 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVL 451 (458)
Q Consensus 397 v~~~~tV~~lK~~i~~~~~-~~~~~q~Li~~G~~L~d~~tl~~~-~i~~~~~i~~~~ 451 (458)
|.++++|.++++-+..... ..-....|.++|+.|+|...|+++ ++++|+.+.++-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 6789999999999998765 455677899999999999999999 689999998753
No 141
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.26 E-value=0.6 Score=43.09 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=59.4
Q ss_pred cEEEeeccCCCcHHHHHHHHHHHhCCCcc---CeEEE--ecCee---cccCccccccccCCCCEEEEEEEe------c--
Q 012713 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRL------R-- 226 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~---~q~L~--~~g~~---L~d~~tL~~~~i~~~s~i~l~~~~------~-- 226 (458)
+.+.+-|+.+.||++|.+.++.+.+++.+ ..|+. ++++. +..+.++.+. .+...+.+-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999999765 44554 56654 5667777765 333344332111 1
Q ss_pred --CCeEEEEEc-------cCCceEEEEeeccchHHHHHHHHhhhhCCCCCc
Q 012713 227 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (458)
Q Consensus 227 --~~~~i~v~~-------~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~ 268 (458)
+..-|.|.- ..|-.+.+.|.++.|++++|..|++++|+|-..
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 112233322 226788899999999999999999999998765
No 142
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.19 E-value=0.83 Score=34.97 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=56.5
Q ss_pred CeEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEE--eCCccc---CCCCcccccccCCCCeEEEE
Q 012713 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 228 ~~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~--~~g~~l---~d~~tL~~~~i~~~~ti~l~ 298 (458)
...|.++.++|.++.-.-..++++++|..-+... |.++..|.|+ |--+.+ +.+.||.+.|+.+..+|.+.
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3567788889999999999999999999999874 7788889987 344444 34679999999999888764
No 143
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.13 E-value=0.68 Score=42.70 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=56.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhHHhCCCCC---CeEEE--ecCee---cCCCcchhhcccccccceeEEEEee--------
Q 012713 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRLR-------- 150 (458)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~Q~L~--~~g~~---L~d~~tl~~y~i~~~s~i~l~~~~~-------- 150 (458)
+.+.+.|+.+.||.+|-++++.+.+++.+ .-++. ++++. +..+.++.+. .+...+.+-.-+.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35788899999999999999999998765 33332 55654 5667777665 2222222221111
Q ss_pred --cceeeEEEec-------cCcEEEeeccCCCcHHHHHHHHHHHhCCCc
Q 012713 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (458)
Q Consensus 151 --~~m~i~v~~~-------~g~~~~~~v~~~~tV~~LK~~I~~~~gip~ 190 (458)
+.+-|.|..+ -|-.+.+.|.++.|..++|++|+++.|+|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233444332 256678899999999999999999999984
No 144
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.36 E-value=0.77 Score=34.84 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=51.2
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEE----cC--eecCCCCCccccCCC--CCCEEEEEE
Q 012713 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVL 451 (458)
Q Consensus 385 vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~----~G--~~L~d~~tl~~~~i~--~~~~i~~~~ 451 (458)
|+.++|...+++|+++.|+.+|-++|+++.++ +.+-.-|.| +| .-|+.+++|.++... ....+++.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 57789999999999999999999999999997 455667888 22 246788899998776 344444433
No 145
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.27 E-value=0.87 Score=34.54 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=48.0
Q ss_pred EEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEe--C--Cc--ccCCCCcccccccCCCCe
Q 012713 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--A--GK--QLEDGRTLADYNIQKEST 294 (458)
Q Consensus 233 v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~--~--g~--~l~d~~tL~~~~i~~~~t 294 (458)
|..++|...+++++++.|+++|-++|+++.||.... +-|.+ . |. =|+.++++..+....+..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP 69 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence 456788899999999999999999999999988766 55777 1 11 267888999987773333
No 146
>PRK06437 hypothetical protein; Provisional
Probab=92.07 E-value=1.3 Score=32.70 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=46.4
Q ss_pred ccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecC
Q 012713 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~ 227 (458)
.+++...++++...||++|-+. .|+++....+..+|+.+. .++-+++|+.+.++....|
T Consensus 8 ~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 8 KGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred cCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccC
Confidence 3556677888889999998755 488888888889999987 6677889999988765444
No 147
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.94 E-value=0.3 Score=44.91 Aligned_cols=69 Identities=28% Similarity=0.371 Sum_probs=49.3
Q ss_pred eeeEEEeccC-cEEE-eeccCCCcHHHHHHHHHH-HhCCCccCeEEE----ecCeecccCccccccccCCCCEEEE
Q 012713 153 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQD-KEGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 153 m~i~v~~~~g-~~~~-~~v~~~~tV~~LK~~I~~-~~gip~~~q~L~----~~g~~L~d~~tL~~~~i~~~s~i~l 221 (458)
|.|++...++ .... ...+...|+.|+++.+.. ...+-+..+|+. -+|+.|-|+.+|++|+..+|.++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4566665544 3344 556778899999977654 456666555444 5799999999999999999977654
No 148
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=91.75 E-value=0.29 Score=37.10 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=47.3
Q ss_pred ecCCCcHHHHHHhhhcccC-CCCCCeeEEecCeecCCCCCcccc-cccCCCeEEEEEeecC
Q 012713 321 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRG 379 (458)
Q Consensus 321 v~~~~ti~~vK~~I~~~~~-i~~~~q~L~~~g~~L~~~~~l~~y-~I~~~~~l~l~~~~~~ 379 (458)
|.+.++|.+++.-+..... ..-....|.++|..|++...|++. |+.+++++.++..+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence 5788999999999887643 333457799999999999999888 6888999999876543
No 149
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.098 Score=50.07 Aligned_cols=73 Identities=26% Similarity=0.376 Sum_probs=55.6
Q ss_pred CeEEEEEecCC--cEEEEEEcCCCCHHHHHHHHhHHhC--CCCCCeEEEecCeecCCCcchhhcccc--cccceeEEEE
Q 012713 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLR 148 (458)
Q Consensus 76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~Q~L~~~g~~L~d~~tl~~y~i~--~~s~i~l~~~ 148 (458)
+..++||..+. +..++..+...||++||......+- -...+|||+|.||.|.|...+++.-++ ...++||+..
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn 87 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN 87 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 45677777765 4678888889999999999987653 234679999999999999999987553 4445666553
No 150
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.10 E-value=0.73 Score=35.70 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=37.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---CceEEEE
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 425 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~---~~q~Li~ 425 (458)
+.+++++|+...+.+.|++.+.+|++.|.++.|.+. +...|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 567889999999999999999999999999999876 4666777
No 151
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=90.28 E-value=2.5 Score=31.33 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=46.5
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|++... .....++++++.||.+|-+.+ +++++...+..+|+.+.. +.-+++||.|.++--..||
T Consensus 5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 45555322 124678889999999888655 667777788889999853 5568899999775545554
No 152
>PRK06437 hypothetical protein; Provisional
Probab=90.17 E-value=2.5 Score=31.05 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=44.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
++.-.++++...||.+|-+. .+++++...+..+|+.+. .++-+++||.|.++--..||
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 34456788888999887644 578888899999999997 66678899999775545544
No 153
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=89.43 E-value=1 Score=33.69 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.5
Q ss_pred EEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCC
Q 012713 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 231 i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g 275 (458)
+.|..++|+...+.++++.|+.++=++++++.|+.+..+.+...|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 346678899999999999999999999999999999999888754
No 154
>smart00455 RBD Raf-like Ras-binding domain.
Probab=89.34 E-value=1.1 Score=33.42 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=40.0
Q ss_pred EEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCC
Q 012713 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 232 ~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g 275 (458)
.|..++|+...+.++++.|+.++=+.++++.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45678899999999999999999999999999999999988854
No 155
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=1.1 Score=40.11 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=49.5
Q ss_pred EEeeccCCCcHHHHHHHHHHHhCCCccCeEEE-ecC-----eec-ccCccccccccCCCCEEEEEEE
Q 012713 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g-----~~L-~d~~tL~~~~i~~~s~i~l~~~ 224 (458)
.....+++.||+++|.+++-..|.+++.+.|. |.| ..| +++..|..|+..+|-.||++-.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 34567789999999999999999999999987 554 334 5678899999999998887743
No 156
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=88.56 E-value=1.6 Score=33.33 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=42.5
Q ss_pred EEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEE
Q 012713 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~ 224 (458)
+...++-...+..||..++.+.+++-+...+......|+++++|.+.+++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 445566778899999999999999999999999898899999999999998887776643
No 157
>smart00455 RBD Raf-like Ras-binding domain.
Probab=88.37 E-value=1.7 Score=32.30 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=42.8
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC--eecCC
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLED 432 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G--~~L~d 432 (458)
..|-.++|+...+.+.|+.|+.++=+.+.++.|+.++...+...| +.|+-
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl 53 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDL 53 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceec
Confidence 356688999999999999999999999999999999998888855 44543
No 158
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=88.33 E-value=1.7 Score=32.57 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.8
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G 427 (458)
+.|-.++|+.-.+.|.|+.|+.++=+++.++.|+.++...+...|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 467789999999999999999999999999999988887776654
No 159
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.14 E-value=2.1 Score=32.36 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=45.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCC----CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~----~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
...++++.+.||.+|.+.+.+.++- ......+..+|+... .+.-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3567888889999999999988642 234566777888887 45578999999887666665
No 160
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=87.66 E-value=2.4 Score=32.07 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=45.0
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCC----CccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
...++++.+.||.+|.+.+....+- ......+.-||+... .+.-+.+|+.|.++.+..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4667888899999999999887542 234556777888876 45678899999888766554
No 161
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=86.84 E-value=0.97 Score=47.16 Aligned_cols=68 Identities=34% Similarity=0.468 Sum_probs=44.8
Q ss_pred CCceEEEeecCCCcHHHHHHhhhcc--cCCCC------CCeeEEec----C-eecCCCC-------------Cccccccc
Q 012713 313 TGKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----G-KQLEDGR-------------TLADYNIQ 366 (458)
Q Consensus 313 ~g~~~~l~v~~~~ti~~vK~~I~~~--~~i~~------~~q~L~~~----g-~~L~~~~-------------~l~~y~I~ 366 (458)
....+.+.|...|||..+|++|.+. .+.|. ..-.|... | ..|.|.. ||++|+|.
T Consensus 200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 3456899999999999999999873 33333 22234332 2 3677732 89999999
Q ss_pred CCCeEEEEEeecCc
Q 012713 367 KESTLHLVLRLRGG 380 (458)
Q Consensus 367 ~~~~l~l~~~~~~~ 380 (458)
+|+++-|+++..+.
T Consensus 280 dga~vaLv~k~~~~ 293 (539)
T PF08337_consen 280 DGATVALVPKQHSS 293 (539)
T ss_dssp TTEEEEEEES----
T ss_pred CCceEEEeeccccc
Confidence 99999999986533
No 162
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=86.67 E-value=3.3 Score=31.56 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~ 428 (458)
++.++|.++.+..+|.++|.++.++|++...|-|.-.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 7889999999999999999999999999999999744
No 163
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=2.3 Score=38.17 Aligned_cols=70 Identities=16% Similarity=0.306 Sum_probs=52.3
Q ss_pred eEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE-EcC-----eec-CCCCCccccCCCCCCEEEEEE
Q 012713 382 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 382 ~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li-~~G-----~~L-~d~~tl~~~~i~~~~~i~~~~ 451 (458)
++.|.+.... .+.-+.+++.||.+||.+++...|.+++.+.|. |.| -.| +++..|..|...+|..||++=
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 3444443332 245667899999999999999999999988875 443 134 466799999999999999753
No 164
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=86.20 E-value=2.6 Score=32.09 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.1
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCee
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~ 201 (458)
++.+.++++.+..+|.++|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 89999999999999999999999999999999987544
No 165
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=86.08 E-value=2.2 Score=33.01 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=36.2
Q ss_pred eEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCcc---CeEEEe
Q 012713 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLIF 197 (458)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~---~q~L~~ 197 (458)
..++.+.|+++.+.+.++..+.+|++.|.++.|+... ...|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 3567789999999999999999999999999998864 455555
No 166
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=85.50 E-value=7.4 Score=28.78 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=42.7
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
...++++.+.||++|-+.+ ++++..-.+..+|+... .+.-+++|+.+.++....||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccccCC
Confidence 4677888889999988665 67777777778998884 36668889999887655443
No 167
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=85.02 E-value=2.3 Score=31.82 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=41.4
Q ss_pred EEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCC
Q 012713 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 281 (458)
Q Consensus 232 ~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~ 281 (458)
.|-.++|+..++.+++++|+.++=+..|.+.++.|....|--+...|+|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 46678899999999999999999999999999999997775544434443
No 168
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=84.89 E-value=5.8 Score=30.83 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=42.8
Q ss_pred cEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEec----C-eec-ccCccccccccCCCCEEEEEEEec
Q 012713 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQL-EDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~----g-~~L-~d~~tL~~~~i~~~s~i~l~~~~~ 226 (458)
..++..++..+||+.+...+.+.+.| ...-||--. + ..| +.+.|+.+.|+.+|..|.+-.+..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 35667788999999999999999999 566787732 2 235 456799999999999887665543
No 169
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=84.64 E-value=3.7 Score=31.34 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=46.5
Q ss_pred eeEEEEcC------CC-cEEEEEecCCCcHHHHHHHHHhhcC-CCC--CceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 381 MQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~------~g-~~~~i~v~~~~tV~~lK~~i~~~~~-~~~--~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
|+|+|+.. .| ....++++.+.||.+|.+.+..... +.. ....+..+|+... .+.-+++||.|.++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 55666654 24 3457888889999999999987752 111 1234566777764 34467889999776
Q ss_pred EEecCC
Q 012713 451 LRLRGG 456 (458)
Q Consensus 451 ~~~~~g 456 (458)
--..||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 545554
No 170
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=83.93 E-value=6.2 Score=28.63 Aligned_cols=60 Identities=15% Similarity=0.317 Sum_probs=41.5
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+.+ + ..|+.+|.+.+ ++++....+..+++.+. ....++.-+++|+.|.++....||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 4666665 3 45899888765 66665556678888775 333456778999999888766554
No 171
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=83.90 E-value=5.3 Score=29.02 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+.+.+ + ..|+.+|.+.+ +++++....-.+|+.++ ...-++.-+++||.|.++--..||
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 35776655 3 35898888654 56666667788898887 334456678999999776555555
No 172
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=83.69 E-value=4.6 Score=30.82 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=40.8
Q ss_pred cEEEeeccCCCcHHHHHHHHHHHh-CCCc--cCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 163 KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~-gip~--~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
....++++...||++|.+.+..+. ++.. ..-.+..||+... .++-+++|++|.++.+..||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 456788888999999999997664 1111 1123556777654 34567889999887665544
No 173
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=83.68 E-value=7.3 Score=35.17 Aligned_cols=70 Identities=29% Similarity=0.359 Sum_probs=50.1
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeCC------cccCCCCcccccccCC-CCeEEEE
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG------KQLEDGRTLADYNIQK-ESTLHLV 298 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~g------~~l~d~~tL~~~~i~~-~~ti~l~ 298 (458)
..+.|...+|.+..+.+++++||+++...++.+.||+... +.|.+.. .-++..+++.+..... ...+++.
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4566778889999999999999999999999999997655 4455422 1245566777666552 3344443
No 174
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.63 E-value=39 Score=31.65 Aligned_cols=207 Identities=15% Similarity=0.226 Sum_probs=110.5
Q ss_pred ccccCCCCEEEEEEEecCCeEEEEEccCCceEEEE----ee-ccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcc
Q 012713 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (458)
Q Consensus 210 ~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~i~~~----v~-~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL 284 (458)
+|-+.+|+.|.+.+--.......+......++.+- ++ .+-|++++.+.|..++.- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~--------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------G--------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------c---------
Confidence 47788999988876543333222333322333322 33 577999999999876410 0
Q ss_pred cccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCee---EE--ecCee------
Q 012713 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---LI--FAGKQ------ 353 (458)
Q Consensus 285 ~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~---L~--~~g~~------ 353 (458)
.|- ....+.+......+..|+|-..-.+.-.+.+.+..|+.+. |..-.|+.+.... +. -+|+.
T Consensus 62 -~~~--~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~a---i~~AGG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 -GFV--KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDV---LALAGGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred -Ccc--cCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHH---HHHcCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 011 1122333333334556777555555556777777888775 4444555543211 11 12332
Q ss_pred ----cCCCCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCC----CCceEEEE
Q 012713 354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP----PDQQRLIF 425 (458)
Q Consensus 354 ----L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~----~~~q~Li~ 425 (458)
+.++..-.++-++++++|++-.. -.++|--.-++.-.+++.++.|+.+ .|+..-|+. +....++-
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~---al~~aGG~~~~a~~~~v~i~R 208 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQ---ALAQGGGLTPRGTERGIRVMR 208 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHH---HHHhcCCCCcccCcceEEEEE
Confidence 33444556788999999998532 1455533333334567778887755 455555542 22233332
Q ss_pred ---cCeecCCCCCccccCCCCCCEEEE
Q 012713 426 ---AGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 426 ---~G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
+|+.-.-...+.+ .+++||+|++
T Consensus 209 ~~~~g~~~~~~~~~~~-~l~~gDii~V 234 (239)
T TIGR03028 209 RDDKGAVEEVSGELGD-LVQPDDVIYV 234 (239)
T ss_pred ECCCCcEEEEecCCCc-ccCCCCEEEE
Confidence 2332111111222 4899999976
No 175
>KOG4261 consensus Talin [Cytoskeleton]
Probab=83.24 E-value=0.77 Score=48.87 Aligned_cols=173 Identities=24% Similarity=0.305 Sum_probs=115.7
Q ss_pred CcEEEeeccCCCcHHHHHHHHHHHhCC---CccCeEEE------ecCeecccCccccccccCCCCEEEEEEEecCCeEEE
Q 012713 162 GKTITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 232 (458)
Q Consensus 162 g~~~~~~v~~~~tV~~LK~~I~~~~gi---p~~~q~L~------~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~~i~ 232 (458)
+-.-++.+.|+++|.+-=..|.+++.- -+..+.|+ -.|-.|+.+++|.+|-+.+++++...-+. -+..
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccce
Confidence 344667888999999988888877632 14445444 24677899999999999999988654332 3455
Q ss_pred EEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeCCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEc
Q 012713 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 311 (458)
Q Consensus 233 v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~~~~~~i~v~~ 311 (458)
|...+|..-++.|..+.+|.+|---||.+-||--.. |.|.-...+++++.. ++|+.+...
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre~~~~~~~~~--------tgtl~~~~~----------- 149 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVREDIEEQNEEG--------TGTLNLKRK----------- 149 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhhHHHHHHhcCCC--------CceEEeehh-----------
Confidence 778888888888999999999999999999975544 666655544443321 134433211
Q ss_pred cCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeEEEEE
Q 012713 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (458)
Q Consensus 312 ~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l~l~~ 375 (458)
+|+=+ --.+.||++...-...+| |+..+++++-||..+-++++..
T Consensus 150 ------~m~~~--~kme~Lkkkl~td~el~w-----------ld~~rtlreqgide~et~llRr 194 (1003)
T KOG4261|consen 150 ------LMRKE--RKMEKLRKKLHTDDELNW-----------LDHSRTLREQGIDEEETLLLRR 194 (1003)
T ss_pred ------HHHhh--hhhHHHHhhcccchhhhh-----------HHHhHHHHhcCccHHHHHHHHH
Confidence 11111 155666666655444555 5667778888877777776654
No 176
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=81.85 E-value=5.8 Score=30.47 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=33.9
Q ss_pred ccCcEEEeeccCCCcHHHHHHHHHHHhCCCc-cCeEEEecCe
Q 012713 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 200 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~~~g~ 200 (458)
.+|..+.+.++++.+..+|++.|++++++.. ....|.|...
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 4778899999999999999999999999865 5566666543
No 177
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=80.97 E-value=6.5 Score=29.28 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=41.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecCCCCCcccc
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 439 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d~~tl~~~ 439 (458)
+.|..++|+...+.|.|+.||.++-..+.++.|+.++...+.. ..+.|..++..+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeee
Confidence 4677889999999999999999999999999999888766543 35566665555443
No 178
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=80.75 E-value=6.3 Score=29.85 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=36.9
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G 427 (458)
++.++. .|....+.++++.|..+|+.+|+.+++.+.....|-|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 344544 567788999999999999999999999887778888864
No 179
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=80.65 E-value=2 Score=41.90 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=55.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC--CCccccCCCCCCEEEE
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHL 449 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~--~tl~~~~i~~~~~i~~ 449 (458)
..+.+.++|..+-....|+..+....|++....-|+|+++++.+. +++.+|+++.++.+.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 567789999999999999999999999999999999999999865 7899999999999854
No 180
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=80.52 E-value=15 Score=33.08 Aligned_cols=73 Identities=27% Similarity=0.336 Sum_probs=52.3
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEc---C---eecCCCCCccccCCC-CCCEEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLV 450 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~---G---~~L~d~~tl~~~~i~-~~~~i~~~ 450 (458)
.++.+.|..++|....+.+++.+|++++-+.++.+.|++. ..--|.+. + .-|+...++.+.... ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4678899999999999999999999999999999999844 23334432 1 346666677776554 33444443
Q ss_pred E
Q 012713 451 L 451 (458)
Q Consensus 451 ~ 451 (458)
.
T Consensus 82 ~ 82 (207)
T smart00295 82 V 82 (207)
T ss_pred E
Confidence 3
No 181
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=79.44 E-value=8.3 Score=27.33 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEE
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
+|+ .++++.+.|..+||+++.... =.+||+|-..+++. -+++||.|.+
T Consensus 6 N~k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~-----~L~e~D~v~~ 53 (57)
T PF14453_consen 6 NEK--EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDI-----ELKEGDEVFL 53 (57)
T ss_pred CCE--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCcc-----ccCCCCEEEE
Confidence 454 488899999999998766542 26899999887665 5567898854
No 182
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=78.39 E-value=9.5 Score=28.38 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.9
Q ss_pred EEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEec
Q 012713 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g 47 (458)
+.|-.++|++..+.|.|+.||.++=+++-++.|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678999999999999999999999999999999885555544
No 183
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=78.20 E-value=14 Score=27.89 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=43.7
Q ss_pred EEEEecCC-CcHHHHHHHHHhhcC-C--CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 393 ITLEVESS-DTIDNVKAKIQDKEG-I--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 393 ~~i~v~~~-~tV~~lK~~i~~~~~-~--~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
..+++.++ .||.+|.+.+.++++ . ......+..+|+...+ +.-+++||.|.++=-..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 47888876 899999999999875 1 1134566778888774 4578899999877555555
No 184
>PRK07440 hypothetical protein; Provisional
Probab=78.13 E-value=15 Score=27.19 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=48.7
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+.|+|++ +|+. .++....||.+|-+ ..+++++..-+-++|..+.-+ .-.++-+++||.|.++--..||
T Consensus 3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 3 NPITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 4566654 4664 66778889987764 557788888899999998733 3455568999999876655555
No 185
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=77.81 E-value=11 Score=27.23 Aligned_cols=62 Identities=19% Similarity=0.394 Sum_probs=43.8
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+. +++..+.|+.+|.+.+ +++++...+..+|+.+..+ .-.++-+++||.|.++--..||
T Consensus 3 iNg~~--~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 3 VNGEP--VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred ECCeE--EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 35665 5567778999888654 5667778888899988533 2344578999999876656655
No 186
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=77.81 E-value=6.3 Score=30.28 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=35.4
Q ss_pred cCCceEEEEeeccchHHHHHHHHhhhhCCCC-CceEEEeCCcc
Q 012713 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 277 (458)
Q Consensus 236 ~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~-~~q~L~~~g~~ 277 (458)
.+|..+.+.+.++-+..+|++.|.+++++.. ..+.|-|...+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 5678899999999999999999999999875 56888885543
No 187
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=77.41 E-value=14 Score=28.01 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=42.9
Q ss_pred EEEeeccCC-CcHHHHHHHHHHHhC-CC--ccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 164 TITLEVESS-DTIDNVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~-~tV~~LK~~I~~~~g-ip--~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
...++++.+ .||.+|.+.+.++.. +- .....+..+|+...+ +.-+++|+.+.++.+..||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356788876 899999999988763 11 123456677777664 5678889999888766554
No 188
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=76.99 E-value=7.3 Score=29.01 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=49.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
...+.+....||.+|.+.+..+++- ......+..+|+...+ .-.+.-+++||.|.++--..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5578899999999999999998641 3367788889999988 3556678899999876656655
No 189
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=76.63 E-value=12 Score=26.86 Aligned_cols=65 Identities=23% Similarity=0.459 Sum_probs=48.8
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHH---HhCCCccCeEEE-ecCeecccCccccccccCCCCEEEEEEEe
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~---~~gip~~~q~L~-~~g~~L~d~~tL~~~~i~~~s~i~l~~~~ 225 (458)
+|+...++..++...--+.++--+ ..|-|+++-.|- -+|..|+-++.+.|||+.+|-++.|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 567777887777765555544333 245688877776 57899999999999999999999888764
No 190
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=76.34 E-value=12 Score=27.14 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=44.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. ++++...||.+|.+.+ +++++...+..+|+.+..+ .-++.-+++||.|.++--..||
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4554 6667788999888665 4667788888999988754 2333468999999876656665
No 191
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=76.20 E-value=8.3 Score=27.35 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=34.1
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcc
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~ 57 (458)
|+|+| +|+ .+++..+.|..++|+++.... =.++++|....++..|.
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~~L~ 46 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDIELK 46 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCccccC
Confidence 77777 343 457888889999999987632 27899999987765554
No 192
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=76.00 E-value=11 Score=27.08 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=48.7
Q ss_pred CCceEEEEeeccchHHHHHHHHhhhh---CCCCCceEEEe-CCcccCCCCcccccccCCCCeEEEEEee
Q 012713 237 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 301 (458)
Q Consensus 237 ~g~~i~~~v~~~dtV~~LK~~i~~~~---gip~~~q~L~~-~g~~l~d~~tL~~~~i~~~~ti~l~~~~ 301 (458)
+|+...++.+.+....-+.++-.+.. |-|++.--|-- +|..++-++...|||+.+|-+++|+++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 56777778777776666655554443 57777766654 6778888999999999999999998764
No 193
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=75.84 E-value=16 Score=26.48 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+. .++.++.|+.+|-+ ..+++++...+.++|..++-.+- +.+ +++||.|.++--..||
T Consensus 5 vNG~~--~~~~~~~tl~~ll~----~l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 5 VNEEQ--VEVDEQTTVAALLD----SLGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred ECCEE--EEcCCCCcHHHHHH----HcCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeeccCC
Confidence 35665 45567788877654 35788899999999998874433 345 8999999876655555
No 194
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=74.97 E-value=8.6 Score=40.92 Aligned_cols=178 Identities=19% Similarity=0.240 Sum_probs=100.7
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--e--cCeec--ccCccccccccCCCCEEEEEE--EecC---CeEEE
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVL--RLRG---GMQIF 232 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~--~g~~L--~d~~tL~~~~i~~~s~i~l~~--~~~~---~~~i~ 232 (458)
.+.+.|+...+++.+|+.|++..++|.+..++. + +|..+ .++.||+. ..++.+|.+-+ .+.. .+.|+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 467889999999999999999999999999888 2 34444 56677765 44566665543 2211 13333
Q ss_pred EE-ccCCc------eEEEEeeccchHHHHHHHHhhhh--------CCCCCceEEEeCCcccCCCCcccccccCCCCeEE-
Q 012713 233 VK-TLTGK------TITLEVESSDTIDNVKAKIQDKE--------GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH- 296 (458)
Q Consensus 233 v~-~~~g~------~i~~~v~~~dtV~~LK~~i~~~~--------gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~- 296 (458)
.- ....+ .+...+..+.||++.|..+-.+. .+....+|+..+++. ..++-+.||++-..+.-+
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~-~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGV-GPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCc-CCceEecCcchhhhhhhhh
Confidence 21 11111 23445678999999887655443 245555555544332 112222222222211110
Q ss_pred -------------EEE-eecCceeEEEEccCCc-----eEEEeecCCCcHHHHHHhhhcccCCCCCC
Q 012713 297 -------------LVL-RLRGGMQIFVKTLTGK-----TITLEVESSDTIDNVKAKIQDKEGIPPDQ 344 (458)
Q Consensus 297 -------------l~~-~~~~~~~i~v~~~~g~-----~~~l~v~~~~ti~~vK~~I~~~~~i~~~~ 344 (458)
+.. ..-....|+++.|--. .+.-.+...+.+.++++.+-+--|||.+.
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~ 1101 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDR 1101 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhh
Confidence 000 1112235666555221 12233345778899999999889999863
No 195
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=74.62 E-value=20 Score=27.57 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=42.3
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCC-----------CccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gi-----------p~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
...++++ ..||.+|.+.+.++..- ......+..+|+....+.. .-+++|+.|.++.+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4567776 89999999999877531 0123556677877654432 568899999888766654
No 196
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=74.56 E-value=12 Score=27.83 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=48.8
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCC--CccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
...+.+....||.+|.+.+..+..- ......+..||+...+ .-.+.-+++|+++.++....||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5667888999999999999876521 2366778889998888 3667778999999888766554
No 197
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=74.31 E-value=1 Score=43.26 Aligned_cols=63 Identities=19% Similarity=0.472 Sum_probs=0.0
Q ss_pred ceeEEEEcCCCcEEEEEec---C--CCcHHHHHHHHHh----------hcCCCCCceE-----EEEcCeecCCCCCcccc
Q 012713 380 GMQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADY 439 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~---~--~~tV~~lK~~i~~----------~~~~~~~~q~-----Li~~G~~L~d~~tl~~~ 439 (458)
.+.|++|.+.+..+.+.+. | +.||.++|..++. +.++|.+..+ |+|+-+.+.|.+||.+.
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHH
Confidence 3666677776655544422 3 5899999999999 8888888888 99999999999999987
Q ss_pred CCC
Q 012713 440 NIQ 442 (458)
Q Consensus 440 ~i~ 442 (458)
.-.
T Consensus 158 l~~ 160 (309)
T PF12754_consen 158 LAD 160 (309)
T ss_dssp ---
T ss_pred Hhc
Confidence 533
No 198
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=73.82 E-value=15 Score=26.60 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=41.5
Q ss_pred EeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 166 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
.++++...||.+|.+.+ +++++...+..+|+....+ ...++-+++|+.+.++....||
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 34556778999988765 5777778888899877432 2334568999999888766554
No 199
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=73.39 E-value=4.8 Score=39.41 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=56.2
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccC--ccccccccCCCCEEEEEEEe
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~--~tL~~~~i~~~s~i~l~~~~ 225 (458)
..+.+++++...-....++..+....|++.+..-++|+++.+.++ .+|.+||+..++.+.+-.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 456788889989999999999999999999999999999999654 67999999999988765443
No 200
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=73.31 E-value=15 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=33.9
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g 199 (458)
++..+.+.++++.|-.+|+.+|+++++.+.....|.|..
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 677889999999999999999999999887777777764
No 201
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=71.03 E-value=22 Score=27.37 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=43.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCC------C-----CCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~------~-----~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
...++++ +.||.+|.+.+.++++- . -....+..+|+....+.. .-+++||.|.++--..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4567776 89999999999988741 1 023566678887765432 568899999877655555
No 202
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=70.59 E-value=1.4 Score=42.34 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHH----------HhCCCccCeE-----EEecCeecccCccccccccC
Q 012713 172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ 214 (458)
Q Consensus 172 ~~tV~~LK~~I~~----------~~gip~~~q~-----L~~~g~~L~d~~tL~~~~i~ 214 (458)
+.+|.++|..+++ ..++|.+..+ |.|+-+.+.|.++|.+..-.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 5899999999999 8999999998 99999999999999987644
No 203
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=70.42 E-value=17 Score=35.59 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=49.7
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
.||+. +++..+.||.+|-+ ..+++++...+.++|+.+.-+ .-.++-+++||.|.++--..||+|
T Consensus 5 VNGk~--~el~e~~TL~dLL~----~L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 5 LNGEP--RQVPAGLTIAALLA----ELGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred ECCEE--EecCCCCcHHHHHH----HcCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCCCC
Confidence 35664 66677888887764 457888999999999999633 345667899999998888899986
No 204
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=70.36 E-value=22 Score=25.59 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=41.6
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+ +++.+.|+.+|.+.+ +++++...+..+|+....+ ...++-+++|+.+.++....||
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45444 445678899988754 5677777777888877322 2344678999999888766554
No 205
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=69.93 E-value=28 Score=25.13 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=43.9
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+. +++..+.|+.++-+ ..+++++...+.++|..+.-.. -.+.-+++||.|.++--..||
T Consensus 5 vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 5 LNGEP--RELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred ECCeE--EEcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 35664 56777889887764 3578888888889998887432 333457899999876656555
No 206
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=69.83 E-value=23 Score=27.48 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=40.5
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccc
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~ 438 (458)
|+|.|.. .|....+.|+++.+..+|.++|.+++++. ....+-|... .|.-|+++
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 3444443 57788999999999999999999999995 5666777655 55555544
No 207
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=69.75 E-value=14 Score=27.57 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.4
Q ss_pred EEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCc
Q 012713 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276 (458)
Q Consensus 233 v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~ 276 (458)
|..++|.+..+.+.++.||.++=.+++++-|++++.+-++..|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44678899999999999999999999999999999887776553
No 208
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=68.78 E-value=9.3 Score=37.89 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=54.6
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEEc--CeecC-CCCCccccCCCCCCEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA--GKQLE-DGRTLADYNIQKESTL 447 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~~--G~~L~-d~~tl~~~~i~~~~~i 447 (458)
+.-.|.|+..+|+.....++...||.+++..|.....- +...+.|+.. -|.|. |++||++.++.+-.++
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34588999999999999999999999999999998764 4445666543 67776 5679999999866544
No 209
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=68.63 E-value=37 Score=24.64 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. +++....|+.+|-+. .+++.....+-.+|+.+.-+ .-++.-+++||.|.++--..||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQP--MQCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 5665 556777899988765 35555667778889988632 2344468999999876656655
No 210
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=68.54 E-value=43 Score=28.80 Aligned_cols=110 Identities=23% Similarity=0.362 Sum_probs=73.5
Q ss_pred EEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCC----eEEEEE-eecCceeEEEEcCCCc
Q 012713 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVL-RLRGGMQIFVKTLTGK 391 (458)
Q Consensus 317 ~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~----~l~l~~-~~~~~~~i~vk~~~g~ 391 (458)
++-+...-+|.+.+=.+|.+-.|| .+.+.+|..|+.... ||=..|. .-.-.. --...+.+.|+. |+
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~Vp---yGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--Gr 76 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTVP---YGPARGTPVNHPDRKVINVGGEEVELTVKV--GR 76 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCCC---CCCCCCCcCCCCcceEEEECCEEEEEEEEE--eE
Confidence 556667778999999999887665 578888888886432 3333222 111111 124456777765 44
Q ss_pred EEEEEecC-CCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccC
Q 012713 392 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440 (458)
Q Consensus 392 ~~~i~v~~-~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~ 440 (458)
+-++++. .+.+..+++..++.+.++-+ +..|+-++...|++||-
T Consensus 77 -i~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 77 -IILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred -EEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 5688888 78888888777776543322 35699999999999983
No 211
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=68.47 E-value=26 Score=28.42 Aligned_cols=63 Identities=29% Similarity=0.322 Sum_probs=46.7
Q ss_pred cEEEEEecCCccHHHHHHHhhcc------cCCCCC-ceEEEEecee--ccCCCCcccccc-----ccccccceeEee
Q 012713 11 KTITLEVESSDTIDNVKAKIQDK------EGIPPD-QQRLIFAGKQ--LEDGRTLADYNI-----QKESTLHLVLRL 73 (458)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~------~gip~~-~q~l~~~g~~--L~d~~tl~~y~i-----~~~sti~l~~~~ 73 (458)
.++++.+.+++|++++.+.+-.+ ..-+++ .-.|...|+. |..+..|.+|.. ..+..+||++..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 57999999999999999877665 223333 5678888886 778888888863 456678877643
No 212
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=68.35 E-value=9.5 Score=40.88 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=39.7
Q ss_pred CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceecc
Q 012713 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~ 51 (458)
-++.++.+-+.++.|+..++++|....|+|...|.|+|.|....
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 45678889999999999999999999999999999999987643
No 213
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=68.13 E-value=22 Score=26.59 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=37.9
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012713 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (458)
Q Consensus 385 vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~ 428 (458)
|-.++|+.-.+.+.|+.||.++=.++.++.|+.++..-++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44678998899999999999999999999999888777766554
No 214
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=68.13 E-value=27 Score=27.03 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=31.9
Q ss_pred ccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCe
Q 012713 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~ 200 (458)
.+|..+.+.++++.+..+|.++|.+++++. ....+-|...
T Consensus 9 ~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 9 AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 378899999999999999999999999984 3444445443
No 215
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=68.04 E-value=29 Score=25.13 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=41.3
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecc-cCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+. ++.+.|+.+|-+. .++++..-.+..++..+. +++. .+ +++|+.+.++....||
T Consensus 6 NG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~--~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA--TK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh--hh-cCCCCEEEEEeeccCC
Confidence 455544 4467788877654 588888888889998773 3333 35 8999999988665443
No 216
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=67.72 E-value=42 Score=24.34 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=40.0
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+. ++...|+.+|.+. .+.+.....+..+++.+.- ...+.+-+++|+.|.++....||
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPMQ--CAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEEE--cCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 355544 4567889988765 3555555677788888742 22344568899999888765554
No 217
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=67.15 E-value=11 Score=39.51 Aligned_cols=64 Identities=34% Similarity=0.471 Sum_probs=43.8
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEEc----Ce-ecCCC-------------CCccccCCCC
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIFA----GK-QLEDG-------------RTLADYNIQK 443 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~~----G~-~L~d~-------------~tl~~~~i~~ 443 (458)
...+.+.|-..|||.++|++|-... + ..+++.-|-+. |+ .|+|. .||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3457899999999999999998753 1 23456665553 33 56655 4799999999
Q ss_pred CCEEEEEEEe
Q 012713 444 ESTLHLVLRL 453 (458)
Q Consensus 444 ~~~i~~~~~~ 453 (458)
|+++-++-++
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999776664
No 218
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=66.98 E-value=49 Score=24.41 Aligned_cols=60 Identities=22% Similarity=0.431 Sum_probs=44.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+ .++++...|+.+|-+ +.+++++..-..++|..+..++ -++.-+++||.|.++--..||
T Consensus 9 g~--~~e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 9 GK--EVEIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred CE--EEEcCCCCcHHHHHH----HhCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEEeecCC
Confidence 55 477777799988764 5678888899999999998543 345577889999776545554
No 219
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=66.79 E-value=9.1 Score=37.95 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=53.2
Q ss_pred CceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCC-CeeEEec--CeecCC-CCCcccccccCCCeE
Q 012713 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA--GKQLED-GRTLADYNIQKESTL 371 (458)
Q Consensus 303 ~~~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~-~q~L~~~--g~~L~~-~~~l~~y~I~~~~~l 371 (458)
+.-.|.|+-.+|..+.+.++-++||.+|+.-|+..-.-.+. .+.|+.. -++|.| +.||.+=|+.+...+
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 44568888999999999999999999999999986543333 3455544 378888 889999998776554
No 220
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=66.72 E-value=42 Score=24.05 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. +++.++.|+.+|-+.+. ++ ....+..+|....... -.+.-+++||.|.++--..||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 4664 56778889998887653 32 3356778888876332 233358899999876656655
No 221
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.57 E-value=18 Score=38.66 Aligned_cols=183 Identities=17% Similarity=0.233 Sum_probs=96.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEE--e--cCeec--CCCcchhhcccccccceeEEE--Ee-ec--ceeeE
Q 012713 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVL--RL-RG--GMQIF 156 (458)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~--~--~g~~L--~d~~tl~~y~i~~~s~i~l~~--~~-~~--~m~i~ 156 (458)
.+.+.|+...++..+|++|++..++|.+.-.+. + +|..+ .++.||+..- ++.+|.+.+ .+ .+ .|.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~--~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAF--QSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhc--ccceEEEEecCcCCCCceeeEEE
Confidence 467889999999999999999999999887776 2 23333 3556777653 344444332 22 12 23332
Q ss_pred EE-eccC---cE---EEeeccCCCcHHHHHHHHHHHh-CC-------CccCeEEEe-----cCeec-ccCccccccc--c
Q 012713 157 VK-TLTG---KT---ITLEVESSDTIDNVKAKIQDKE-GI-------PPDQQRLIF-----AGKQL-EDGRTLADYN--I 213 (458)
Q Consensus 157 v~-~~~g---~~---~~~~v~~~~tV~~LK~~I~~~~-gi-------p~~~q~L~~-----~g~~L-~d~~tL~~~~--i 213 (458)
.- .... +. +..-+..++|+++.|..+-.+. .| ...+.|+.. -|+.+ +++.++.|-. +
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 21 1111 11 2233568899999887654332 12 222223221 23443 3333333322 0
Q ss_pred CCC-------CEEEEEEEecCCeEEEEEccCC-----ceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEe
Q 012713 214 QKE-------STLHLVLRLRGGMQIFVKTLTG-----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273 (458)
Q Consensus 214 ~~~-------s~i~l~~~~~~~~~i~v~~~~g-----~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~ 273 (458)
... +.+ ...++....+|+|+-+.- ..+.-.+-+.+.+.++++.+.+--|||.+...++.
T Consensus 1036 ~~~~~~qE~~deV-~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~K 1106 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEV-MIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAITK 1106 (1203)
T ss_pred HHHHHHHHHHhhc-ccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhhh
Confidence 000 000 000111123333333221 11222233477899999999999999999766553
No 222
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=66.50 E-value=45 Score=23.87 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=38.1
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+. ++++...|++++.+.+ +++ ....+..+|+....+ .-.+.-+++|+.+.++....||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 3444 4556778999988765 333 234566788776422 1234448889999988766554
No 223
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=65.87 E-value=13 Score=28.18 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.8
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecC
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g 199 (458)
++.+.+++.....+|..+|+++...|++.-.|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 577889999999999999999999999999999854
No 224
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=65.42 E-value=42 Score=24.15 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=41.6
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+. ++++...|+.++-.. .+++...-.+..+|..+.-. .-.+.-+++|+.+.++....||
T Consensus 6 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 3554 456677898887654 57888877888888776532 2334557889999888665443
No 225
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=64.82 E-value=44 Score=27.06 Aligned_cols=75 Identities=27% Similarity=0.264 Sum_probs=49.4
Q ss_pred ceeEEEEcCC-CcEEEEEecCCCcHHHHHHHHHhhc----C--CCCC-ceEEEEcCe--ecCCCCCcccc-----CCCCC
Q 012713 380 GMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADY-----NIQKE 444 (458)
Q Consensus 380 ~~~i~vk~~~-g~~~~i~v~~~~tV~~lK~~i~~~~----~--~~~~-~q~Li~~G~--~L~d~~tl~~~-----~i~~~ 444 (458)
.+.|.|...+ ...+++.+++++++.++.+.+-.+. + -+++ +-.|--.|+ -|..+..|.+| +++.|
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~ 96 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNG 96 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcC
Confidence 3445554443 4568999999999999999887761 1 2222 555655665 24455566665 56788
Q ss_pred CEEEEEEEec
Q 012713 445 STLHLVLRLR 454 (458)
Q Consensus 445 ~~i~~~~~~~ 454 (458)
..+|+++..+
T Consensus 97 ~~~~L~L~~~ 106 (108)
T smart00144 97 REPHLVLMTL 106 (108)
T ss_pred CCceEEEEec
Confidence 8888887654
No 226
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=64.61 E-value=28 Score=26.29 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=34.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G 427 (458)
|.+....+....+.+.++.+..+|+.+|++.++.+.....|.|..
T Consensus 4 vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344443333333889999999999999999999988888888863
No 227
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=63.58 E-value=21 Score=26.78 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCceEEEEee-ccchHHHHHHHHhhhhCCCCCceEEEeCC
Q 012713 237 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 237 ~g~~i~~~v~-~~dtV~~LK~~i~~~~gip~~~q~L~~~g 275 (458)
+|....+.+. .+.|.++|+++|+++++++.....+.|..
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3567778887 88899999999999999886666666644
No 228
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=63.38 E-value=18 Score=28.07 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.8
Q ss_pred EEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc
Q 012713 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (458)
Q Consensus 230 ~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~ 268 (458)
.+-|..++|.++.+.+..+++.+++=+.++.+.|+|.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 345666789999999999999999999999999999887
No 229
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=63.34 E-value=30 Score=26.69 Aligned_cols=67 Identities=12% Similarity=0.232 Sum_probs=48.2
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.|+|+| ||+. .+++...||.+|-+. .++++....+-.+|..+. ...-+++-+++||.|.++--..||
T Consensus 18 ~m~I~V---NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISI---NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEE---CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 355543 5664 566778888877654 478888888889999996 335566678999999886666665
No 230
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=62.94 E-value=11 Score=29.73 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=36.9
Q ss_pred eeccCCCcHHHHHHHHHHHhCCCccCeEEEecCe-------ec-c--cCccc--cccccCCCCEEEEEEEecCC
Q 012713 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QL-E--DGRTL--ADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~-------~L-~--d~~tL--~~~~i~~~s~i~l~~~~~~~ 228 (458)
+++....||.+|-+.+.+.. |....+++..+. .| + |-+.+ .++-+++|+.|.++.+..||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 34446789999999998776 333334443221 12 1 22234 35789999999888766554
No 231
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=62.89 E-value=49 Score=24.16 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=43.6
Q ss_pred CCCcEEEEEecCC-CcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 388 LTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~i~v~~~-~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+.+ +++.+ .||.+|-+ ..+++++..-+-++|+.+.-+ .-+++-+++||.|.++.-..||
T Consensus 5 vNG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 5 INGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred ECCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 356654 55555 57877654 457788888888999998744 3455568999999876655555
No 232
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=62.83 E-value=29 Score=26.25 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=32.5
Q ss_pred cCcEEE-eeccCCCcHHHHHHHHHHHhCCCccCeEEEecC
Q 012713 161 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (458)
Q Consensus 161 ~g~~~~-~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g 199 (458)
.|.... +.++++.+..+|+.+|+++++.+.....+.|..
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 455555 889999999999999999999997777887753
No 233
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=62.53 E-value=48 Score=25.55 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=42.8
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+ +++.+.||.+|-+. .++++...-+..+|..+. ....+.+-+++|+.|.++-...||
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45544 44567788887664 478887777889998883 334566678999999888665544
No 234
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=61.37 E-value=17 Score=27.61 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.2
Q ss_pred eEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCC
Q 012713 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 240 ~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g 275 (458)
|+.+.+.+....++|..+|.+++++|++.-.|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 566777889999999999999999999999999954
No 235
>KOG4261 consensus Talin [Cytoskeleton]
Probab=61.07 E-value=22 Score=38.51 Aligned_cols=107 Identities=26% Similarity=0.331 Sum_probs=79.1
Q ss_pred EEEEeeccchHHHHHHHHhhhhCC---CCCceEEEe------CCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEc
Q 012713 241 ITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 311 (458)
Q Consensus 241 i~~~v~~~dtV~~LK~~i~~~~gi---p~~~q~L~~------~g~~l~d~~tL~~~~i~~~~ti~l~~~~~~~~~i~v~~ 311 (458)
-++..+|+.+|-+-...|.+++.- -+..|-|.- +|--|+.+++|.+|-+.+++++....+.+ ..-|+.
T Consensus 15 ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lkvrm 91 (1003)
T KOG4261|consen 15 KTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLKVRM 91 (1003)
T ss_pred eeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cceeee
Confidence 344556899999988888887631 144444432 34458999999999999999998765443 245677
Q ss_pred cCCceEEEeecCCCcHHHHHHhhhcccCCCCCC-eeEEec
Q 012713 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA 350 (458)
Q Consensus 312 ~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~~-q~L~~~ 350 (458)
.+|..-|+-|..+.++..+...|+.+.||.... +.|+-.
T Consensus 92 ldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre 131 (1003)
T KOG4261|consen 92 LDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVRE 131 (1003)
T ss_pred cccccceeeecccccHHHHHHHHHhccCccchhhhhhhHH
Confidence 888888999999999999999999999986532 444433
No 236
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=59.97 E-value=23 Score=29.34 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=43.8
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCcccc---CCCCCCEEEEEEE
Q 012713 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY---NIQKESTLHLVLR 452 (458)
Q Consensus 395 i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~---~i~~~~~i~~~~~ 452 (458)
+-|+.+.||+++...|..+.++++++.-|..++..+..+.++++. .-.++-.+++...
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 379999999999999999999999886555566666777787775 2244556666553
No 237
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.86 E-value=14 Score=35.76 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=43.7
Q ss_pred EeeccchHHHHHHHHhhhhCCCCCceEEEe---CCc-----ccCCCCcccccccCCCCeEEE
Q 012713 244 EVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHL 297 (458)
Q Consensus 244 ~v~~~dtV~~LK~~i~~~~gip~~~q~L~~---~g~-----~l~d~~tL~~~~i~~~~ti~l 297 (458)
.+.-.-||.+++.++..+.|+.+...+|++ .|+ .++-+..|-.|+|+.|+.+.+
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 344456999999999999999999999987 333 366678889999999988654
No 238
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=59.61 E-value=25 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=30.4
Q ss_pred EEec-CCCcHHHHHHHHHh-hcCCCCC----ceEEEEcCee----cCCCCCccccCCCCCCEEEE
Q 012713 395 LEVE-SSDTIDNVKAKIQD-KEGIPPD----QQRLIFAGKQ----LEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 395 i~v~-~~~tV~~lK~~i~~-~~~~~~~----~q~Li~~G~~----L~d~~tl~~~~i~~~~~i~~ 449 (458)
+.++ ..+|+++|-+.+-+ +.|+... .-.++|.... -..+++|+++||.+|+.+.+
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence 4455 35699999988655 6675332 3345554332 33457999999999999865
No 239
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.52 E-value=10 Score=36.58 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=43.9
Q ss_pred eeccCCCcHHHHHHHHHHHhCCCccCeEEEe---cCee-----cccCccccccccCCCCEEEE
Q 012713 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ-----LEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~---~g~~-----L~d~~tL~~~~i~~~s~i~l 221 (458)
.-+.-..||.+++..+..+.|+.+.+++|++ +|+. ++.+..|..|.|++|+.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 4455677999999999999999999999996 3332 45567888889999987754
No 240
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=58.53 E-value=32 Score=25.76 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=30.2
Q ss_pred cCcEEEeecc-CCCcHHHHHHHHHHHhCCCccCeEEEec
Q 012713 161 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 198 (458)
Q Consensus 161 ~g~~~~~~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~~ 198 (458)
+|..+.+.++ .+.+..+|+.+|.++++.+.....+.|.
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 4667888888 8999999999999999987644555554
No 241
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=56.61 E-value=14 Score=29.21 Aligned_cols=34 Identities=35% Similarity=0.706 Sum_probs=22.7
Q ss_pred EEEEcCeecCCCCCcccc-CCCCCCEEEEEEEecC
Q 012713 422 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRG 455 (458)
Q Consensus 422 ~Li~~G~~L~d~~tl~~~-~i~~~~~i~~~~~~~~ 455 (458)
.|-|.|+.|..+++|++| |-.+-..|.+-+.++|
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g 37 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRG 37 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCC
Confidence 367999999999999999 3333344444344443
No 242
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=56.40 E-value=56 Score=33.86 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=54.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC----CCCceEEE---EcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~----~~~~q~Li---~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
.+++|...+. ...+-+..+..|.++-..+-+..+- +.....+. -+|..|+.++||.+.++.||+++++.-+
T Consensus 3 ~RVtV~~~~~-~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 3 CRVTVLAGRR-AVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEEeeCCe-eeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 4677877654 4688889999999999999887763 22222233 3588999999999999999999987643
No 243
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=56.38 E-value=36 Score=33.96 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=52.5
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC--CCCCceEEEEc----Cee--cCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~----G~~--L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|.+.+|..+|+. .+++.++++.+.|-.++-..+. ..+++.-+.-+ |.. +-.++|+.|.|++.|+.+++-.
T Consensus 1 Mi~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 567788888875 7999999999999988887764 34554444332 331 3456799999999999998866
No 244
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=55.87 E-value=26 Score=27.19 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.4
Q ss_pred eEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCc
Q 012713 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (458)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~ 40 (458)
++=|-.++|.++++++..+|+.+.+=+.+..+.|+|..-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 344556899999999999999999999999999999765
No 245
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=55.85 E-value=23 Score=29.30 Aligned_cols=55 Identities=22% Similarity=0.498 Sum_probs=38.1
Q ss_pred ccC-CCcHHHHHHHHHHHh----CCCc------cCeEEEec----------------C-eec---ccCccccccccCCCC
Q 012713 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA----------------G-KQL---EDGRTLADYNIQKES 217 (458)
Q Consensus 169 v~~-~~tV~~LK~~I~~~~----gip~------~~q~L~~~----------------g-~~L---~d~~tL~~~~i~~~s 217 (458)
|+. +.||.+|++.+.+.. |+|| +..++.+. . =.| +++.+|.++||.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 899999988887653 5554 33334321 1 235 678899999999999
Q ss_pred EEEEEE
Q 012713 218 TLHLVL 223 (458)
Q Consensus 218 ~i~l~~ 223 (458)
.|.++-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 887663
No 246
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=55.37 E-value=32 Score=26.33 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.5
Q ss_pred ccCCceEEEEeec--cchHHHHHHHHhhhhCCCCCceEEEe
Q 012713 235 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 273 (458)
Q Consensus 235 ~~~g~~i~~~v~~--~dtV~~LK~~i~~~~gip~~~q~L~~ 273 (458)
+.+|.++.+.+.+ +-+.++|++++..+++++ .+.|-|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3678899999988 669999999999999998 566666
No 247
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=54.09 E-value=72 Score=25.52 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=48.0
Q ss_pred ceeEEEEcC-CCcEEEEEecCCCcHHHHHHHHHhhc--CCC---CC-ceEEEEcCe--ecCCCCCcccc-----CCCCCC
Q 012713 380 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIP---PD-QQRLIFAGK--QLEDGRTLADY-----NIQKES 445 (458)
Q Consensus 380 ~~~i~vk~~-~g~~~~i~v~~~~tV~~lK~~i~~~~--~~~---~~-~q~Li~~G~--~L~d~~tl~~~-----~i~~~~ 445 (458)
.+.|.|... .+..+++.++++.|+.+|.+++-.+. +.. .. +-.|--.|. -|..+..|.+| +++.+-
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 456667666 56678999999999999999888772 121 12 566666666 35567788887 456777
Q ss_pred EEEEEEEe
Q 012713 446 TLHLVLRL 453 (458)
Q Consensus 446 ~i~~~~~~ 453 (458)
.+++++-.
T Consensus 96 ~~~L~Lv~ 103 (106)
T PF00794_consen 96 DPHLVLVH 103 (106)
T ss_dssp -EEEEEEE
T ss_pred CcEEEEEe
Confidence 77777643
No 248
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=53.72 E-value=42 Score=25.27 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=35.6
Q ss_pred EEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE
Q 012713 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (458)
Q Consensus 156 ~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~ 196 (458)
.|-.++|....+.+.+++|+.++-+...++.++.|....|-
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 35667899999999999999999999999999988776555
No 249
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=53.23 E-value=99 Score=25.28 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=42.4
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCcccc--CCC-CCCEEEEEEEe
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY--NIQ-KESTLHLVLRL 453 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tl~~~--~i~-~~~~i~~~~~~ 453 (458)
.+-|+.+.||.++...|..+.++.+++-..+| ++.....+.++++. +-+ ++..+++....
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys~ 107 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSS 107 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEec
Confidence 45699999999999999999998777755555 45444566777665 223 35677776543
No 250
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=52.78 E-value=46 Score=25.49 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=27.3
Q ss_pred ccCcEEEeeccC--CCcHHHHHHHHHHHhCCC
Q 012713 160 LTGKTITLEVES--SDTIDNVKAKIQDKEGIP 189 (458)
Q Consensus 160 ~~g~~~~~~v~~--~~tV~~LK~~I~~~~gip 189 (458)
.+|.+..+.+++ +.+..+|++.|+..++++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 578889999998 679999999999999998
No 251
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=52.65 E-value=48 Score=25.38 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.7
Q ss_pred eEEEEeeccchHHHHHHHHhhhhCC--CCCceEEE
Q 012713 240 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 272 (458)
Q Consensus 240 ~i~~~v~~~dtV~~LK~~i~~~~gi--p~~~q~L~ 272 (458)
..++.|..++|+.++-.++.+++++ .+..|.|.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7889999999999999999999998 45557774
No 252
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=52.63 E-value=1e+02 Score=23.44 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=34.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCC--CCceEEEE------cCeecCCCCCc
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIF------AGKQLEDGRTL 436 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~--~~~q~Li~------~G~~L~d~~tl 436 (458)
+...++.|++++|..++-+.+.++++++ ++.-.|+- ..+.|.|+...
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCCh
Confidence 5667899999999999999999999986 44444431 23466666543
No 253
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=52.42 E-value=47 Score=26.89 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=41.0
Q ss_pred EEEEEEEecCCeEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcc
Q 012713 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 277 (458)
Q Consensus 218 ~i~l~~~~~~~~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~ 277 (458)
.+.+.++.-|+.+|. +.-...|++++|++.+-..+...+++++..+-++|-+.-
T Consensus 30 kV~i~l~aiG~~Pil------K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPIL------KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred eEEEEEeccCCCcce------ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 344555555555541 345678899999999999999999999999999885543
No 254
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=52.28 E-value=44 Score=25.49 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.4
Q ss_pred CceEEEEeeccchHHHHHHHHhhhhCCC--CCceEEE
Q 012713 238 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 272 (458)
Q Consensus 238 g~~i~~~v~~~dtV~~LK~~i~~~~gip--~~~q~L~ 272 (458)
+...++.|..++|..++-..+.++++++ +..|.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678899999999999999999999987 5667776
No 255
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=51.88 E-value=33 Score=25.72 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=36.6
Q ss_pred ceEEEeecCCCcHHHHHHhhhcccC-CCCCCeeEEec------CeecCCCCCcccccccCCCeEEEEE
Q 012713 315 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVL 375 (458)
Q Consensus 315 ~~~~l~v~~~~ti~~vK~~I~~~~~-i~~~~q~L~~~------g~~L~~~~~l~~y~I~~~~~l~l~~ 375 (458)
+.+-.-..|+.|+.+++..|..++. +.|+...+... |.-|+.+..+.+- ..+++++.++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~ 69 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVIL 69 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEe
Confidence 4455668899999999999999866 44444343321 3444444444443 23555555554
No 256
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=51.71 E-value=1e+02 Score=26.42 Aligned_cols=110 Identities=20% Similarity=0.351 Sum_probs=71.8
Q ss_pred EEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeE----E-EEEeecCceeEEEEcCCCc
Q 012713 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL----H-LVLRLRGGMQIFVKTLTGK 391 (458)
Q Consensus 317 ~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l----~-l~~~~~~~~~i~vk~~~g~ 391 (458)
++-++..-+|.+.+=.+|.+-.|| .+.+.+|..|+...+ ||-..|..+ . .+......+.++|+. |+
T Consensus 5 fP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~Vp---yGPa~G~pv~h~~Rk~I~V~g~~veL~V~V--Gr 75 (150)
T TIGR03260 5 FPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKVP---YGPARGLPVNHPDRKTIRVKGEDVELRVQV--GR 75 (150)
T ss_pred echhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCCC---CCcccCCCCCCCcceEEEECCEEEEEEEEE--eE
Confidence 455666778999998888766664 577888888886433 433332111 1 111124456677665 44
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~ 440 (458)
+-+++...+.+..+++...+.+.++-+ +..|+-++...|++||-
T Consensus 76 -I~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 76 -IILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred -EEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhhh
Confidence 457777888888888877777654332 45688899999999983
No 257
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=50.74 E-value=62 Score=33.53 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=55.1
Q ss_pred eeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCC------CccCeEEE-ecCeecccCccccccccCCCCEEEEEEEec
Q 012713 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gi------p~~~q~L~-~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~ 226 (458)
+++|...+ +...+-++.+..|+++-..+-+..+= ++....|. -+|..|+.+.||.+.|+.+|+.+++.....
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 45666443 45778889999999999998876653 22334455 578899999999999999999999987544
No 258
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.16 E-value=38 Score=32.03 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=56.3
Q ss_pred cceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeec---ccCccccccccCCCCEEEE
Q 012713 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~~~i~~~s~i~l 221 (458)
....+.|+..+|++...++.+..|...++.-|.-..|...+-..|. |-...+ +-.++|...++-+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3567889999999999999999999999999999998877666665 444444 3357888888888777654
No 259
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=49.79 E-value=80 Score=24.44 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=31.9
Q ss_pred cchHHHHHHHHhh-hhCCCCC----ceEEEeCCcc----cCCCCcccccccCCCCeEEEEEee
Q 012713 248 SDTIDNVKAKIQD-KEGIPPD----QQRLIFAGKQ----LEDGRTLADYNIQKESTLHLVLRL 301 (458)
Q Consensus 248 ~dtV~~LK~~i~~-~~gip~~----~q~L~~~g~~----l~d~~tL~~~~i~~~~ti~l~~~~ 301 (458)
..|+.+|-..+.. +.|+... ...++|.... -...++|+++||.+|+.+.+.-..
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence 4599999887654 6665442 2456664443 345789999999999998876543
No 260
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=49.68 E-value=30 Score=28.60 Aligned_cols=54 Identities=20% Similarity=0.503 Sum_probs=37.7
Q ss_pred eec-cchHHHHHHHHhhh----hCCCCCc------eEEEe---C--------------Cccc---CCCCcccccccCCCC
Q 012713 245 VES-SDTIDNVKAKIQDK----EGIPPDQ------QRLIF---A--------------GKQL---EDGRTLADYNIQKES 293 (458)
Q Consensus 245 v~~-~dtV~~LK~~i~~~----~gip~~~------q~L~~---~--------------g~~l---~d~~tL~~~~i~~~~ 293 (458)
|+- +.||.+|++.+.+. -|+||.. ..+++ + ++.| +++.||.++||+++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 454 77999998877664 4676654 23333 1 1346 788999999999998
Q ss_pred eEEEE
Q 012713 294 TLHLV 298 (458)
Q Consensus 294 ti~l~ 298 (458)
.|.+.
T Consensus 102 EiSfF 106 (122)
T PF10209_consen 102 EISFF 106 (122)
T ss_pred eeeee
Confidence 88764
No 261
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=49.23 E-value=22 Score=27.48 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=38.4
Q ss_pred EEecCCCcHHHHHHHHHhhcCCC-------CCceEEEEcCe-ec------CCCCCccccCCCCCCEEEEE
Q 012713 395 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGK-QL------EDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 395 i~v~~~~tV~~lK~~i~~~~~~~-------~~~q~Li~~G~-~L------~d~~tl~~~~i~~~~~i~~~ 450 (458)
++|++++|..+|-+.++++..+. .+.-.|++.+- .| +-+++|.+. +.+|+.|++.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57999999999999999985432 23444444332 12 245789998 8999988763
No 262
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=49.21 E-value=36 Score=36.70 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=38.7
Q ss_pred eccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeec
Q 012713 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 202 (458)
Q Consensus 159 ~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L 202 (458)
+.++..+.+-++++.|...+++.|...+|+|...|.|.|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 34566788999999999999999999999999999999987654
No 263
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=47.95 E-value=57 Score=27.61 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=62.8
Q ss_pred cCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCC------------ccccccccccccceeEeecCCeEEEEEecC
Q 012713 18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTLT 85 (458)
Q Consensus 18 ~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~t------------l~~y~i~~~sti~l~~~~~~~~~i~vk~~~ 85 (458)
-|+-.|+.+-+|.+-+.....+.=..-++|+.|++... |+.|.+..+..-.+.-.-.++.++.+++-.
T Consensus 22 lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKk 101 (149)
T PF10787_consen 22 LPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKK 101 (149)
T ss_pred CcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEecc
Confidence 36788999999988887777777789999999987532 456667666653333333456788899888
Q ss_pred Cc-EEEEEEcC-CCCHHHHHHH
Q 012713 86 GK-TITLEVES-SDTIDNVKAK 105 (458)
Q Consensus 86 g~-~~~l~v~~-~~tV~~lK~~ 105 (458)
|+ .+++.+.+ +|-|.-+|+.
T Consensus 102 GK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 102 GKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred CcceeEEEEEecccHHHHHHHh
Confidence 86 47887765 4567777754
No 264
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=47.13 E-value=25 Score=27.74 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=37.1
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCCceEEEEc-C------eecCCCC---Cc--cccCCCCCCEEEEEEEecCC
Q 012713 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQLEDGR---TL--ADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 395 i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~-G------~~L~d~~---tl--~~~~i~~~~~i~~~~~~~~g 456 (458)
++++...||.+|-+.+++++. ....+++.. | .+|-++. .+ .++-+++||.|.++--..||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 445467899999999998863 333333332 2 1222332 23 35679999999887655555
No 265
>PRK07440 hypothetical protein; Provisional
Probab=46.68 E-value=1.2e+02 Score=22.41 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=44.4
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
|.|.+. |+. .++....||.+|-+ ..++++...-+..+|..+.- ....++-+++|+.|.++-...||
T Consensus 5 m~i~vN---G~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 5 ITLQVN---GET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred eEEEEC---CEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 445443 554 55567788988765 45777777778899988742 22345668899999887655443
No 266
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=45.87 E-value=1.4e+02 Score=23.74 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=45.1
Q ss_pred CCeEEEEEec-CCcEEEEEEcCCCCHHHHHHHHhHH--hCCCC----CCeEEEecCee--cCCCcchhhcc-----cccc
Q 012713 75 GGMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPP----DQQRLIFAGKQ--LEDGRTLADYN-----IQKE 140 (458)
Q Consensus 75 ~~~~i~vk~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~----~~Q~L~~~g~~--L~d~~tl~~y~-----i~~~ 140 (458)
..+.|.|... .+..+++.++.+.|+.++-+.+..+ .+..+ ++-.|--.|+. |..+.+|.+|. +..+
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~ 94 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRG 94 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcC
Confidence 3466777666 5567999999999999999888776 22222 13445566654 66778888884 4555
Q ss_pred cceeEEE
Q 012713 141 STLHLVL 147 (458)
Q Consensus 141 s~i~l~~ 147 (458)
..++|.+
T Consensus 95 ~~~~L~L 101 (106)
T PF00794_consen 95 KDPHLVL 101 (106)
T ss_dssp --EEEEE
T ss_pred CCcEEEE
Confidence 5666654
No 267
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=45.64 E-value=2.6e+02 Score=26.09 Aligned_cols=176 Identities=16% Similarity=0.237 Sum_probs=94.9
Q ss_pred hcccccccceeEEEEeecceeeEEEe-ccCcEEEe----ecc-CCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCcc
Q 012713 134 DYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITL----EVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207 (458)
Q Consensus 134 ~y~i~~~s~i~l~~~~~~~m~i~v~~-~~g~~~~~----~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~t 207 (458)
+|-+..|+.|.+.+--.......+.. .+|. +.+ ++. .+.|+.++.+.|+.+..- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~-I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~-------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGS-ITFPLIGEVKLGGETPAAAERKIASRLSK----------G-------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCe-EEeeecceEEECCCCHHHHHHHHHHHHhh----------c--------
Confidence 36677788877766432222222222 2333 222 233 578999999999876420 0
Q ss_pred ccccccCCCCEEEEEEEecCCeEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc--eEEE---eCCcc-----
Q 012713 208 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLI---FAGKQ----- 277 (458)
Q Consensus 208 L~~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~--q~L~---~~g~~----- 277 (458)
+.-....+.+.+....+..++|.-.-++.-.+.+....|+.++-+ .--|+.++. ...+ ..|+.
T Consensus 62 ----~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~---~AGG~~~~~~~~~~i~~~~~g~~~~~~i 134 (239)
T TIGR03028 62 ----GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLA---LAGGVTPDGADVITLVREREGKIFRKQI 134 (239)
T ss_pred ----CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHH---HcCCCCccCCCeEEEEEecCCeEEEEEE
Confidence 011122344444444455666654444444566667778887543 334454432 2222 23332
Q ss_pred -----cCCCCcccccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCC
Q 012713 278 -----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (458)
Q Consensus 278 -----l~d~~tL~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~ 342 (458)
+..+..-.++-+++||+|++... + .++|-..-++.-.+.+.++.|+.+. |..-.|+..
T Consensus 135 dl~~l~~~g~~~~ni~L~~GD~I~V~~~--~--~v~v~G~V~~pg~~~~~~~~tl~~a---l~~aGG~~~ 197 (239)
T TIGR03028 135 DFPALFNPGGDNENILVAGGDIIYVDRA--P--VFYIYGEVQRPGAYRLERNMTVMQA---LAQGGGLTP 197 (239)
T ss_pred EHHHHHhcCCCcCCcEEcCCCEEEEcCC--c--cEEEEeEccCCeEEEeCCCCCHHHH---HHhcCCCCc
Confidence 23444556788999999988632 1 3556444455556777888777655 454445443
No 268
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=45.22 E-value=27 Score=37.96 Aligned_cols=52 Identities=21% Similarity=0.430 Sum_probs=44.2
Q ss_pred cCcEEEeeccC-CCcHHHHHHHHHHHhCCCccCeEEE-ecCeecccCccccccc
Q 012713 161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYN 212 (458)
Q Consensus 161 ~g~~~~~~v~~-~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~ 212 (458)
.|.+.+++... .+|+++||.+|+.+.|+....+.|. -+|..+..++.|..|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 57777888774 5799999999999999999999887 5677788899999886
No 269
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=44.79 E-value=68 Score=25.97 Aligned_cols=39 Identities=5% Similarity=0.194 Sum_probs=33.6
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeec
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 202 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L 202 (458)
.-.+.|++++|++.+-..+....++++.++-+.|-+...
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 456789999999999999999999999999988755544
No 270
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=43.87 E-value=76 Score=23.84 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=24.7
Q ss_pred EEcCCCcE-EEEEec-CCCcHHHHHHHHHhhcCC-C-CCceEEEEc
Q 012713 385 VKTLTGKT-ITLEVE-SSDTIDNVKAKIQDKEGI-P-PDQQRLIFA 426 (458)
Q Consensus 385 vk~~~g~~-~~i~v~-~~~tV~~lK~~i~~~~~~-~-~~~q~Li~~ 426 (458)
-|+.+.+. ..+.++ +.-+|.+||..|.++.++ . .+-.-.+|+
T Consensus 3 YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~n 48 (74)
T PF08783_consen 3 YKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYN 48 (74)
T ss_dssp EEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEE
T ss_pred EEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEEC
Confidence 34444443 357777 466999999999887665 3 333334444
No 271
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=43.87 E-value=1e+02 Score=23.51 Aligned_cols=52 Identities=21% Similarity=0.466 Sum_probs=39.8
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCccccCCCCCCEEEEE
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
+..+...+++..||+++- +..|+|..+..+++ +|+...= +|-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEE
Confidence 456788999999998875 46799888887665 7776653 3677889999764
No 272
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=43.10 E-value=80 Score=24.21 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=30.5
Q ss_pred CCceEEEEeeccchHHHHHHHHhhhhCCCC--CceEEE
Q 012713 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 272 (458)
Q Consensus 237 ~g~~i~~~v~~~dtV~~LK~~i~~~~gip~--~~q~L~ 272 (458)
++...++.|..++|+.++-..+.++++++. ..+.|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 466889999999999999999999999875 456665
No 273
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=42.43 E-value=42 Score=36.60 Aligned_cols=54 Identities=20% Similarity=0.406 Sum_probs=44.7
Q ss_pred CCceEEEEeec-cchHHHHHHHHhhhhCCCCCceEEEe-CCcccCCCCcccccccC
Q 012713 237 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQ 290 (458)
Q Consensus 237 ~g~~i~~~v~~-~dtV~~LK~~i~~~~gip~~~q~L~~-~g~~l~d~~tL~~~~i~ 290 (458)
.|.+.+++.+. ..|+++||.+|+...|+....+.|+- +|..|..++.+..|...
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~Sta 58 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTA 58 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccc
Confidence 57788888875 66999999999999999888887775 66678889999888644
No 274
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=41.82 E-value=91 Score=24.42 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=30.5
Q ss_pred ccCcEEEeeccC-----CCcHHHHHHHHHHHhCCCc-cCeEEEecC
Q 012713 160 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 199 (458)
Q Consensus 160 ~~g~~~~~~v~~-----~~tV~~LK~~I~~~~gip~-~~q~L~~~g 199 (458)
.+|....+.++. +.+..+|+.+|++.+.+|+ ....|.|..
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 456666677764 6899999999999999988 455666643
No 275
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=41.28 E-value=95 Score=23.12 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=49.4
Q ss_pred EeeccCCCcHHHHHHHHHHHhCCCccCeEEE-ecCeecccCccccccccCCCCEEEEEEEec
Q 012713 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 166 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~ 226 (458)
.+.|+.......+-+.-++++.+|+..--.+ .+|--++..++-..+-++.|+.+.+..|-+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 4678888888888888899999987655444 778888889999999999999998887654
No 276
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=41.07 E-value=68 Score=25.90 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.4
Q ss_pred EEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCC
Q 012713 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~ 38 (458)
|+|-..+|.+-++.|.-.-+-++||+|+-+|.|.+-
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 678889999999999999999999999999999887
No 277
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=40.98 E-value=2.4e+02 Score=24.49 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred cccCCCCeEEEEEeecCcee--EEEEccCCceEEEee-----cCCCcHHHHHHhhhccc
Q 012713 287 YNIQKESTLHLVLRLRGGMQ--IFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKE 338 (458)
Q Consensus 287 ~~i~~~~ti~l~~~~~~~~~--i~v~~~~g~~~~l~v-----~~~~ti~~vK~~I~~~~ 338 (458)
|-+.+||.|.+..--.+... +.| ..+|. +++.. -.+-|.+++++.|++++
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V-~~dG~-I~lP~iG~v~v~G~T~~e~~~~I~~~l 57 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPV-RPDGK-ITTPLVGDLVASGKTPTQLARDIEEKL 57 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEE-CCCCe-EeecccCeEEECCCCHHHHHHHHHHHH
Confidence 55777887777664433322 222 33442 33322 36889999999999874
No 278
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=40.52 E-value=2.4e+02 Score=24.36 Aligned_cols=108 Identities=22% Similarity=0.393 Sum_probs=64.2
Q ss_pred CCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCC----EEEEEEEecCCeEEEEEccCCceEEEEee
Q 012713 171 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRLRGGMQIFVKTLTGKTITLEVE 246 (458)
Q Consensus 171 ~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s----~i~l~~~~~~~~~i~v~~~~g~~i~~~v~ 246 (458)
..+|.+.|-.++.+..|| .|.+-.|..|...-+ ||-..|. .-.-.... +|-.+-+....| .+.+++.
T Consensus 12 ~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~Vp---yGPa~G~pv~h~~Rk~I~V-~g~~veL~V~vG-ri~lele 82 (153)
T PF02505_consen 12 KPETTEKLLNELYSIEGI----RRVVIHGPRLPKTVP---YGPARGTPVNHPDRKVINV-GGEEVELTVKVG-RIILELE 82 (153)
T ss_pred CHHHHHHHHHHHhccCCE----EEEEEECCCCCCCCC---CCCCCCCcCCCCcceEEEE-CCEEEEEEEEEe-EEEEEec
Confidence 457889999999888776 577777777653222 2211111 11111111 222233333333 5667777
Q ss_pred c-cchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCC
Q 012713 247 S-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 292 (458)
Q Consensus 247 ~-~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~ 292 (458)
. .+.+..+++.+.+.+..+.+ + ..|.-+....|+.|| ++.|
T Consensus 83 ~~~~~ie~I~~iCee~lpf~y~---i-~~G~f~r~~~TvtDY-~KyG 124 (153)
T PF02505_consen 83 DEEDVIEKIREICEEVLPFGYD---I-KEGKFIRTKPTVTDY-AKYG 124 (153)
T ss_pred CcHHHHHHHHHHHHHhCCCceE---e-eeeEEeccCCchhhh-hhcC
Confidence 7 78899998888877643333 2 358888899999998 4544
No 279
>PRK06347 autolysin; Reviewed
Probab=40.11 E-value=1.8e+02 Score=31.36 Aligned_cols=211 Identities=11% Similarity=0.042 Sum_probs=103.5
Q ss_pred EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEeecceeeEEE----------
Q 012713 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK---------- 158 (458)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~m~i~v~---------- 158 (458)
....|...||+.. |..++|++++.. .-+|+ |..-.+..|..|.+.......-....+
T Consensus 331 ~~Y~V~sGDTL~~----IA~rygvSv~eL-~~~N~--------l~~d~L~~Gq~L~VP~~~~~~~~~t~~~~~~~~~~~~ 397 (592)
T PRK06347 331 KIYTVVKGDSLWR----IANNHKVTVANL-KAWNN--------LKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKP 397 (592)
T ss_pred eEEEeCCCCCHHH----HHHHhCCCHHHH-HHHhC--------CCccccccCcEEEEecccccccccccccccccccccc
Confidence 4567889999877 667777766321 12222 222245566655443210000000000
Q ss_pred --eccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC----eEE-
Q 012713 159 --TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG----MQI- 231 (458)
Q Consensus 159 --~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~----~~i- 231 (458)
..........|..++|+.. |..++|+++.... -++ .+..-.+..|..|.+....... .+.
T Consensus 398 ~~~~~~~~~~ytVk~GDTL~s----IA~kygVSv~~L~-~~N--------~l~s~~L~~Gq~L~IP~~~~~~~~t~~~s~ 464 (592)
T PRK06347 398 STGTSTNAKVYTVVKGDSLWR----IANNNKVTIANLK-SWN--------NLKSDFIYPGQKLKVSAGSTSNTNTSKPST 464 (592)
T ss_pred ccccccCceeEEecCCCCHHH----HHHHhCCCHHHHH-HHh--------CCCcceeccCcEEEEecCCccccccccccc
Confidence 0011234567888899886 6778888766422 111 1222246667766554221100 000
Q ss_pred ------EEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEEEEeecCce
Q 012713 232 ------FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (458)
Q Consensus 232 ------~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~~~~~ 305 (458)
...........+.|..+||+.. |..++|+.+.+.. .-+.+..-.|..|..|.+-......-
T Consensus 465 ~~~~~k~~s~~~~~~~~YtVk~GDTL~s----IAkkygVSv~~L~---------~~N~l~s~~L~~GQ~L~Ip~~~~~s~ 531 (592)
T PRK06347 465 NTNTSKPSTNTNTNAKVYTVAKGDSLWR----IANNNKVTIANLK---------SWNNLKSDFIYPGQKLKVSAGSTTNN 531 (592)
T ss_pred ccccccccccccccceeeeecCCCCHHH----HHHHHCCCHHHHH---------HhcCCCcccccCCcEEEEecCccccc
Confidence 0000112345788999999986 4556777766432 11112223577777766543211000
Q ss_pred eEEE-----EccCCceEEEeecCCCcHHHHHHhhhcccCCCC
Q 012713 306 QIFV-----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (458)
Q Consensus 306 ~i~v-----~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~ 342 (458)
.-.. ...........|.++||+..| .+++|+..
T Consensus 532 ~~t~~~s~~~~~~~~~~~Y~Vk~GDTL~sI----A~KygvSv 569 (592)
T PRK06347 532 TNTAKPSTNKPSNSTVKTYTVKKGDSLWAI----SRQYKTTV 569 (592)
T ss_pred ccccCCccCCccCccceeeecCCCCcHHHH----HHHhCCCH
Confidence 0000 001112457899999999987 45555544
No 280
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=39.75 E-value=35 Score=28.28 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=34.2
Q ss_pred eeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccc
Q 012713 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~ 210 (458)
+-|+.+.||+++...|..+.++++++.-|+-++..+..+.++++
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 36999999999999999999999998444455555565666655
No 281
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=39.54 E-value=80 Score=25.47 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=48.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCC---CCCceEEEEcCeecCCCC-CccccCCCCCCEEEEEEEecCCC
Q 012713 393 ITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQLEDGR-TLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 393 ~~i~v~~~~tV~~lK~~i~~~~~~---~~~~q~Li~~G~~L~d~~-tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
..+.-.+..|..++-+.+.++.++ ++=.+..|+.|+.+.... .|-.+++..+ .+.+-+|-..-+
T Consensus 23 ~~l~~~~~~t~~~~l~~l~~~l~lh~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~-~l~l~vrs~~~~ 90 (104)
T PF14807_consen 23 QNLPSSSQRTLPEFLQRLQQKLRLHVVEVIGNEGIFACQLLNSSPVCLLHCRVNAG-TLDLWVRSSDSP 90 (104)
T ss_pred EeccccCcCCHHHHHHHHHHhcCceEEEEeCccceeeeeccCCCCeEEEEEEecCC-eEEEEEEcCCCC
Confidence 334334667888888888888773 445568899999999888 8999998777 888888866544
No 282
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=39.44 E-value=89 Score=24.48 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=30.9
Q ss_pred cCCceEEEEeec-----cchHHHHHHHHhhhhCCCC-CceEEEeCCc
Q 012713 236 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 276 (458)
Q Consensus 236 ~~g~~i~~~v~~-----~dtV~~LK~~i~~~~gip~-~~q~L~~~g~ 276 (458)
.+|..+.+.+.. +-+..+|+.+|.+.+++|+ ..+.|.|...
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 445566666653 5799999999999999998 5577777543
No 283
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=39.13 E-value=88 Score=24.86 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.8
Q ss_pred EcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEE
Q 012713 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (458)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~ 45 (458)
+..+|.|-.+.|+.+.|-.+++.|+.+..+++.+ ..|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 4568999999999999999999999999998876 55655
No 284
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=38.76 E-value=1.2e+02 Score=22.96 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.0
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCC--CccCeEEE
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 196 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gi--p~~~q~L~ 196 (458)
..++.|++++|+.++-..+.+++++ .+.+..|.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7789999999999999999999998 34556663
No 285
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=38.75 E-value=1.7e+02 Score=22.66 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=42.2
Q ss_pred EEEecCCCcHHHHHHHHHhhc-C--CC--CC-ceEEEEcC--eecCCCCCccccCCCCCCEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~-~--~~--~~-~q~Li~~G--~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
-+.|+..+|+.++-++++... | ++ +. ..++-++| +.+..+.++++-+|++-+.|.+..
T Consensus 18 Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 18 LVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 367999999999999998864 4 22 33 56677888 999999999999999999988764
No 286
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=38.73 E-value=1.6e+02 Score=22.21 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHHhC-----CCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 172 SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 172 ~~tV~~LK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
..||.+|++.+.++.. ......+..-|++.-. .+.-+++|+.|-++.+..||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCCCCCC
Confidence 5799999999987752 1112223334443222 24468899999888766554
No 287
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=38.52 E-value=1.1e+02 Score=23.69 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=32.5
Q ss_pred EEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCC
Q 012713 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116 (458)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~ 116 (458)
|.|-..+|..-++.|+...|++++-+.+..+.+...+.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 55666789999999999999999999999998876543
No 288
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=38.37 E-value=1.2e+02 Score=24.73 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=47.3
Q ss_pred ecCCeEEEEEecCCc------EEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeec-CCCcchhhcc---cccccc
Q 012713 73 LRGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN---IQKEST 142 (458)
Q Consensus 73 ~~~~~~i~vk~~~g~------~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L-~d~~tl~~y~---i~~~s~ 142 (458)
.++.+.|.|...... .-.+-|+.+.||.++..-|+.+..+++++-.++|-|..+ ..+.++.+.. -.++..
T Consensus 21 yp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGf 100 (112)
T cd01611 21 YPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGF 100 (112)
T ss_pred CCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCE
Confidence 345566666643321 123459999999999999999999988776666655544 4556665532 123445
Q ss_pred eeEEE
Q 012713 143 LHLVL 147 (458)
Q Consensus 143 i~l~~ 147 (458)
+++..
T Consensus 101 Lyl~Y 105 (112)
T cd01611 101 LYMTY 105 (112)
T ss_pred EEEEE
Confidence 55544
No 289
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=37.94 E-value=1.1e+02 Score=24.60 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=42.2
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCc-eEEEEcCeecCCCCCcccc---CCCCCCEEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY---NIQKESTLHLVLR 452 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~-q~Li~~G~~L~d~~tl~~~---~i~~~~~i~~~~~ 452 (458)
.+-|+.+.||.++...|..+..+++++ .-|..++.....+.++++. .-.++..+++...
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 355899999999999999999986654 6666677677788888876 2245666766553
No 290
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=37.55 E-value=1.6e+02 Score=21.40 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=40.3
Q ss_pred cCcEEEeeccCC-CcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~-~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+ +++.. .||.+|-+ ..++++...-+..+|..+.-+ ..+.+-+++|+.+.++-...||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 45544 44454 57887765 357777777777999887432 2345568999999887655443
No 291
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=37.28 E-value=1.2e+02 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=33.6
Q ss_pred ccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEec
Q 012713 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~ 198 (458)
.+|.+..+.++..-|-+.|+++|...+.+|++..-+.|-
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 567778888888899999999999999999988777763
No 292
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=37.22 E-value=1.3e+02 Score=23.86 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=29.8
Q ss_pred ccCcEEEeeccCCCcHHHHHHHHHHHhCCCc-cCeEEE
Q 012713 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 196 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~ 196 (458)
.++...++.++.+.||+++-..+..++.++. .+.+|.
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 4566678999999999999999999998876 444444
No 293
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=37.05 E-value=1.2e+02 Score=23.17 Aligned_cols=53 Identities=21% Similarity=0.443 Sum_probs=40.3
Q ss_pred CceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEe-CCcccCCCCcccccccCCCCeEEEEE
Q 012713 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 299 (458)
Q Consensus 238 g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~-~g~~l~d~~tL~~~~i~~~~ti~l~~ 299 (458)
+..+.+...+..||+++- +..|+|...--++. +|+..+- +|-+++|+.+.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 567888889999999863 45799999977666 6765543 47888999988764
No 294
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=37.00 E-value=33 Score=27.11 Aligned_cols=18 Identities=50% Similarity=0.992 Sum_probs=16.5
Q ss_pred EEEecCeecCCCcchhhc
Q 012713 118 RLIFAGKQLEDGRTLADY 135 (458)
Q Consensus 118 ~L~~~g~~L~d~~tl~~y 135 (458)
.|-|+|++|..+.+|++|
T Consensus 3 ~LW~aGK~l~~~k~l~dy 20 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY 20 (98)
T ss_pred eEEeccccccCCCcHHHh
Confidence 467999999999999999
No 295
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=36.36 E-value=63 Score=24.83 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=30.7
Q ss_pred eEEEEc-CCCcEEEEEecCCccHHHHHHHhhcccCCCC
Q 012713 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (458)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~ 38 (458)
.||... .++..-++.|.+++|..+|=..+.++.++..
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~ 43 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTD 43 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 455544 4577888999999999999999999999865
No 296
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=35.62 E-value=1.4e+02 Score=23.11 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=36.1
Q ss_pred EEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEe
Q 012713 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273 (458)
Q Consensus 231 i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~ 273 (458)
|.|...+|...++.|.+..|+.++-.++.++.+...+.-+-++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv 47 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV 47 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4466688999999999999999999999999988777655444
No 297
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=35.45 E-value=77 Score=24.16 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=33.6
Q ss_pred ccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeC
Q 012713 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274 (458)
Q Consensus 235 ~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~ 274 (458)
..+|.+..+.....=|.+.|+++|+..+.+|++..-+.|-
T Consensus 6 ~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 6 SFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred EeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 3566777777777779999999999999999988888883
No 298
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=34.74 E-value=80 Score=24.67 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=35.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceE-EEEcCeecCC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLED 432 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~-Li~~G~~L~d 432 (458)
..++|.|++..|=.++|+.++.-+|+++...+ +.+.|+.-..
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~ 63 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRK 63 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEES
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEe
Confidence 56899999999999999999999999886665 6677775543
No 299
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.53 E-value=2.3e+02 Score=22.25 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCCcHHHHHHHHHhhcCCCCCceEEEEcCeecC---------CCCCc--cccCCCCCCEEEEEEEecCC
Q 012713 399 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE---------DGRTL--ADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 399 ~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~---------d~~tl--~~~~i~~~~~i~~~~~~~~g 456 (458)
.-+||++|-..|..+.--.+. +.++.+|..-. |-..| .+|.+++||.|.++....||
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~-~lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRD-SLFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTLHGG 101 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCc-ceEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEeccCC
Confidence 456899888887776533333 35666665422 22233 57899999999777666655
No 300
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=33.13 E-value=1.1e+02 Score=23.96 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=34.2
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceE-EEEcCeec
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQL 430 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~-Li~~G~~L 430 (458)
...+.|.|++..|=.++|+.++.-+++++...+ ++..|+.=
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~k 61 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTK 61 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCcee
Confidence 467999999999999999999999999887665 55666543
No 301
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=32.90 E-value=19 Score=35.77 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=42.5
Q ss_pred ecCCcEEEEEEc-CCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcch
Q 012713 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (458)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl 132 (458)
..+|....+.+. .++.+..+|+++.+..++++..|.+.+.|..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 356777777776 67789999999999999999999999999999887443
No 302
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=32.74 E-value=3.2e+02 Score=23.49 Aligned_cols=104 Identities=22% Similarity=0.402 Sum_probs=61.1
Q ss_pred CCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCC----CEEEEEEEecCCeEEEEEccCCceEEEEee
Q 012713 171 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE----STLHLVLRLRGGMQIFVKTLTGKTITLEVE 246 (458)
Q Consensus 171 ~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~----s~i~l~~~~~~~~~i~v~~~~g~~i~~~v~ 246 (458)
..+|.+.|-.++.+..|| .|++-.|..|...-+ ||--.| ..-.-.... +|-.+-++...| .+-+++.
T Consensus 11 ~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~Vp---yGPa~G~pv~h~~Rk~I~V-~g~~veL~V~VG-rI~le~~ 81 (150)
T TIGR03260 11 KAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKVP---YGPARGLPVNHPDRKTIRV-KGEDVELRVQVG-RIILELE 81 (150)
T ss_pred CHHHHHHHHHHhhccCCE----EEEEEECCCCCCCCC---CCcccCCCCCCCcceEEEE-CCEEEEEEEEEe-EEEEEec
Confidence 456888888888887776 566766766643221 221111 111111111 232333333333 4566767
Q ss_pred ccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCccccc
Q 012713 247 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287 (458)
Q Consensus 247 ~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~ 287 (458)
..+.++.+++.+.+.+..+.+ +..|+-|....|+.||
T Consensus 82 ~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 82 DEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred CHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 888999999888887764433 3356678888888888
No 303
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=32.49 E-value=5.4e+02 Score=25.97 Aligned_cols=209 Identities=16% Similarity=0.209 Sum_probs=113.8
Q ss_pred ccccccCCCCEEEEEEEecCCeEE------------EEEccCCceEEEE----e-eccchHHHHHHHHhhhhCCCCCceE
Q 012713 208 LADYNIQKESTLHLVLRLRGGMQI------------FVKTLTGKTITLE----V-ESSDTIDNVKAKIQDKEGIPPDQQR 270 (458)
Q Consensus 208 L~~~~i~~~s~i~l~~~~~~~~~i------------~v~~~~g~~i~~~----v-~~~dtV~~LK~~i~~~~gip~~~q~ 270 (458)
-.+|-|..|+.|.+.+-....... +....+| ++.+- | -.+-|++++++.|..++.
T Consensus 82 ~~~Y~igpGDvL~I~V~~~peL~~~~~~~~~~~~~g~~V~~dG-~I~~P~vG~V~vaG~T~~e~~~~I~~~L~------- 153 (379)
T PRK15078 82 NYEYRVGPGDVLNVTVWDHPELTTPAGQYRSASDTGNWVHADG-TIFYPYIGKVHVAGKTVTEIRSDITGRLA------- 153 (379)
T ss_pred CCCcEECCCCEEEEEEecCcccccccccccccccCCCEECCCC-eEeeccCceEEECCCCHHHHHHHHHHHHH-------
Confidence 356899999999887743222111 0122333 23222 1 147799999999988741
Q ss_pred EEeCCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecC-CCcHHHHHHhhhcccCCCCCC----e
Q 012713 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQ----Q 345 (458)
Q Consensus 271 L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~ti~~vK~~I~~~~~i~~~~----q 345 (458)
.|-.. ..+.+......+..|+|...-.+.-.+.+.+ ..|+.+. |..-.|+...- -
T Consensus 154 ---------------~~~~~--PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tllda---Ia~AGG~~~~a~~~~V 213 (379)
T PRK15078 154 ---------------KYIES--PQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDA---INAAGGLTDDADWRNV 213 (379)
T ss_pred ---------------HhccC--CeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHH---HHHccCCCcccccceE
Confidence 11111 2233333334455677755555555566654 4676665 44445554331 1
Q ss_pred eEEecCe--------ecCCCCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEec-CCCcHHHHHHHHHhhcCC
Q 012713 346 RLIFAGK--------QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGI 416 (458)
Q Consensus 346 ~L~~~g~--------~L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~i~v~-~~~tV~~lK~~i~~~~~~ 416 (458)
.|.=+|+ .+.++..-.++-++++++|++-.. +..+++|--.-++.-.+.+. ++.|+.+.- ...-|+
T Consensus 214 ~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~--~~~~v~V~GeV~~Pg~~~~~~~~~TL~~Al---~~AGGl 288 (379)
T PRK15078 214 VLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRN--DDLKVFVMGEVKKQSTLKMDRSGMTLTEAL---GNAEGI 288 (379)
T ss_pred EEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCC--CCcEEEEeeecccceEEecCCCCCCHHHHH---HhcCCC
Confidence 2332342 223344456666899999988542 34577776655665567774 677887664 444444
Q ss_pred CC----CceEEEEcCee----------------cCCCCC---ccccCCCCCCEEEE
Q 012713 417 PP----DQQRLIFAGKQ----------------LEDGRT---LADYNIQKESTLHL 449 (458)
Q Consensus 417 ~~----~~q~Li~~G~~----------------L~d~~t---l~~~~i~~~~~i~~ 449 (458)
.. ..+.+++.+.. |.|... =..+-++++|+|++
T Consensus 289 ~~~~ad~~~V~V~R~~~~~~~~~~~~~~vy~ldl~~~~~~~la~~f~Lqp~DiVyV 344 (379)
T PRK15078 289 DQTTADATGIFVIRPLKGEGGRNGKIANIYQLDASDATALVMGTEFRLQPYDIVYV 344 (379)
T ss_pred CccccCcccEEEEECCCCccccCCCcceEEEEeCCChhhhhcccCCccCCCCEEEE
Confidence 21 24555554321 222221 13567899999975
No 304
>PRK08453 fliD flagellar capping protein; Validated
Probab=31.89 E-value=1.4e+02 Score=32.51 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=53.2
Q ss_pred ccCCceEEEEeeccchHHHHHHHHhhh-----------hCCCCCceEEEeCCcccCCCC------cccccccCCCCeEEE
Q 012713 235 TLTGKTITLEVESSDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGR------TLADYNIQKESTLHL 297 (458)
Q Consensus 235 ~~~g~~i~~~v~~~dtV~~LK~~i~~~-----------~gip~~~q~L~~~g~~l~d~~------tL~~~~i~~~~ti~l 297 (458)
..+|++++++|.+..|+++|+.+|-+- .| ....|+|+..+.+.-.+. +|..-.+..|.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 446999999999999999999999842 24 222477777666654443 333333333331111
Q ss_pred EEeecCceeEEEEccCCceEEEee
Q 012713 298 VLRLRGGMQIFVKTLTGKTITLEV 321 (458)
Q Consensus 298 ~~~~~~~~~i~v~~~~g~~~~l~v 321 (458)
..--.+...|++|..+|+..++.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 222245567888888886665444
No 305
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.73 E-value=1.2e+02 Score=28.89 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=53.7
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEe--CCc---ccCCCCcccccccCCCCeEEEE
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGK---QLEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~--~g~---~l~d~~tL~~~~i~~~~ti~l~ 298 (458)
-.+.|+..+|.|++.+.++..|.+.++..+....|...+=|.|.- --+ .-+..++|...++-+.+++.+.
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 456788899999999999999999999999998887665555543 111 2244678888888888887654
No 306
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=31.39 E-value=2.1e+02 Score=21.51 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=35.2
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li 424 (458)
|.+..++.+.-.++|.|+.|+.+--.+.-+..|+.++.....
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~ 43 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVF 43 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEE
Confidence 456678878778999999999999999999999988766543
No 307
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=31.26 E-value=1.8e+02 Score=23.04 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=33.3
Q ss_pred EEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEe
Q 012713 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (458)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~ 121 (458)
++-.+|.+-.+.|+.+.+..+|+.++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 35578899999999999999999999999988765 44544
No 308
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=31.09 E-value=85 Score=24.04 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=33.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEE--cCe--ecCCCCC
Q 012713 393 ITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF--AGK--QLEDGRT 435 (458)
Q Consensus 393 ~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~--~G~--~L~d~~t 435 (458)
-++.|.|..|+++|=.++++++.+ .|++-.|++ +|. .|.|+..
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~ 63 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTY 63 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccc
Confidence 479999999999999999999997 666666543 443 5666643
No 309
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=30.59 E-value=23 Score=35.17 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=44.2
Q ss_pred eccCcEEEeecc-CCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCcccc
Q 012713 159 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209 (458)
Q Consensus 159 ~~~g~~~~~~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~ 209 (458)
..+|....+.+. .+..+..+|.++....+|++..|.+.+.|..|.|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 456788887777 788999999999999999999999999999998886554
No 310
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=30.27 E-value=1.7e+02 Score=24.86 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=60.6
Q ss_pred eccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCc------------cccccccCCCCEEEEEEEecCCeEEEEEc
Q 012713 168 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR------------TLADYNIQKESTLHLVLRLRGGMQIFVKT 235 (458)
Q Consensus 168 ~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~------------tL~~~~i~~~s~i~l~~~~~~~~~i~v~~ 235 (458)
..-|+..|+.|-.+.+-.--+..+.-.+.++|+.|+++. -|..|.+.+|+.=...-+..+|-++.+.+
T Consensus 20 t~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~t 99 (149)
T PF10787_consen 20 TSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDT 99 (149)
T ss_pred ecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEe
Confidence 334666777776665544455566778889999998654 36678888888754444556778888888
Q ss_pred cCCc-eEEEEeec-cchHHHHHHH
Q 012713 236 LTGK-TITLEVES-SDTIDNVKAK 257 (458)
Q Consensus 236 ~~g~-~i~~~v~~-~dtV~~LK~~ 257 (458)
..|+ .+++.+-+ .|-|.-+|+.
T Consensus 100 KkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 100 KKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred ccCcceeEEEEEecccHHHHHHHh
Confidence 7775 66777765 4456555544
No 311
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=30.17 E-value=1.9e+02 Score=21.56 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=43.9
Q ss_pred EEeeccCCCcHHHHHHHHHHHhCCCccCeEEE-ecCeecccCccccccccCCCCEEEEE
Q 012713 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~i~~~s~i~l~ 222 (458)
..+.|+.+.....+-+.-++.+.+|+..--++ .+|--.+..+|-.+.-++.|+.|.|.
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 45788888888888888899999998766666 67888888888888888888888763
No 312
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=29.90 E-value=2.1e+02 Score=28.21 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=44.9
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+. ++++.+.|+.+|-+. .+++++..-+..||+.+. .....++-+++|+.|.++-...||
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCC
Confidence 4554 455667888887654 588888888889999884 223456679999999998877666
No 313
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=29.63 E-value=88 Score=23.98 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=31.4
Q ss_pred eEEEeecCCCcHHHHHHhhhcccCCCCCC-eeEEe--cC--eecCCC
Q 012713 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AG--KQLEDG 357 (458)
Q Consensus 316 ~~~l~v~~~~ti~~vK~~I~~~~~i~~~~-q~L~~--~g--~~L~~~ 357 (458)
.-||.|.|+.|+++|=..+..++++...+ ..|.+ +| +.|.++
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 34899999999999999999999876554 34443 34 567663
No 314
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.44 E-value=91 Score=28.21 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=30.7
Q ss_pred ccccC-CCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcc
Q 012713 286 DYNIQ-KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337 (458)
Q Consensus 286 ~~~i~-~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~ 337 (458)
++|.+ .|+|+|++.---.+.+|.. ...+.|.++||.+.+.++|+..
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~------Q~~Vpv~~~Dt~etl~~RV~~~ 172 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIA------QAAVPVLPGDTAETLEARVLEQ 172 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEE------EEeeeecCCCCHHHHHHHHHHH
Confidence 34455 7899998853211112221 2258899999999999999874
No 315
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=29.05 E-value=2.2e+02 Score=23.27 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=39.1
Q ss_pred CCCcccccccCCCCeEEEEEeecCceeEEEEc---cCCceEEEeecCCCc--HHHHHHhhhc
Q 012713 280 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKT---LTGKTITLEVESSDT--IDNVKAKIQD 336 (458)
Q Consensus 280 d~~tL~~~~i~~~~ti~l~~~~~~~~~i~v~~---~~g~~~~l~v~~~~t--i~~vK~~I~~ 336 (458)
++.++--||+..||.|...... +...+.+. ..+.|+-+.+.+... ++++..++..
T Consensus 17 ~n~Pf~a~glA~gDvV~~~~~~--g~~~~~~~v~~sGnsTiRv~~~~~~~~~~~~v~~~l~~ 76 (117)
T PF14085_consen 17 DNIPFFAYGLALGDVVRAEPDD--GELWFQKVVESSGNSTIRVIFDDPGPDDIEAVREELEA 76 (117)
T ss_pred EecccccCCCCCCCEEEEEeCC--CeEEEEEEEecCCCEEEEEEEcCCcchhHHHHHHHHHH
Confidence 4568889999999999988654 44455544 555777777776666 7777766663
No 316
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=28.90 E-value=2.5e+02 Score=21.06 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=33.9
Q ss_pred EEecC-CCcHHHHHHHHHhhcC-----CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 395 LEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 395 i~v~~-~~tV~~lK~~i~~~~~-----~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+++++ ..||.+|++.+.+++. ......+.-.+++.-.+ +.-+++||.|-++=-..||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44543 5799999999998863 12233333345543322 3358899999665434443
No 317
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=28.76 E-value=2.4e+02 Score=21.10 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=36.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcC-CCCCceEEEEcCeecCCC--------CCccccCCCCCCEEEEEEEe
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDG--------RTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~-~~~~~q~Li~~G~~L~d~--------~tl~~~~i~~~~~i~~~~~~ 453 (458)
+.|-.-.+|+.|+.+|+..|.+++. .-|....+.- ..|+|. -+.+|. ...|++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4566668999999999999999987 2333223221 234443 223332 2367777776653
No 318
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=28.31 E-value=2.1e+02 Score=21.29 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=44.8
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc-CeecCCCCCccccCCCCCCEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~-G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
.+.|..+.....+-+-.++++.+|+..--+|-+ |--..-.+|..+-.++.|+.+.++
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 577888888888888999999998888887775 778888899999889999988763
No 319
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=28.26 E-value=1.2e+02 Score=30.70 Aligned_cols=78 Identities=13% Similarity=0.255 Sum_probs=64.1
Q ss_pred cceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeecc---cCccccccccCCCCEEEEEEEe
Q 012713 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~s~i~l~~~~ 225 (458)
...+|.|+.++|.+++=.++.++-...++..+.+.-++....+.|. |-.++.. -+++|.+..+-+...+.|+.+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4567889999999999999999999999999999888888777776 7777763 3589999999998888777665
Q ss_pred cCC
Q 012713 226 RGG 228 (458)
Q Consensus 226 ~~~ 228 (458)
++.
T Consensus 393 r~t 395 (506)
T KOG2507|consen 393 RAT 395 (506)
T ss_pred Ccc
Confidence 543
No 320
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=27.90 E-value=79 Score=24.01 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEEcCCCCHHHHHHHHhHHh
Q 012713 89 ITLEVESSDTIDNVKAKIQDKE 110 (458)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~ 110 (458)
++++++.+.|+.++|+.+.+.-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 5789999999999999998754
No 321
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.54 E-value=1.3e+02 Score=23.16 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=43.1
Q ss_pred cCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeCCcc---------cCCCCcccccccCCCCeEEEE
Q 012713 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ---------LEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 236 ~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~g~~---------l~d~~tL~~~~i~~~~ti~l~ 298 (458)
.+|......++++.|-++|.+++.+....+.++ +.+.|...+ ++=...++=|.+...+.+.++
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ih 79 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIH 79 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEE
Confidence 456777778888999999999999999998876 666664432 111224455666666655544
No 322
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.32 E-value=1.1e+02 Score=27.70 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=33.9
Q ss_pred cccc-ccccccceeEeecCCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhC
Q 012713 58 DYNI-QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 111 (458)
Q Consensus 58 ~y~i-~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g 111 (458)
+++. ..|+|+|++-.-.++-+|..+ -.+.+.+.||.+.|.++|++.+.
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~Q------~~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIAQ------AAVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEEE------EeeeecCCCCHHHHHHHHHHHHH
Confidence 4454 388899988754433344432 25778999999999999998664
No 323
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=27.15 E-value=2.9e+02 Score=21.40 Aligned_cols=59 Identities=3% Similarity=0.170 Sum_probs=42.0
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCee-cC-CCCCcccc--CCCCCCEEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LE-DGRTLADY--NIQKESTLHLVLR 452 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~-L~-d~~tl~~~--~i~~~~~i~~~~~ 452 (458)
.+.|+++.||.++..-|..+.++.+++-..+|=++. +. .+.++++. +-.++..+++...
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys 81 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYC 81 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEe
Confidence 567999999999999999999998777555565554 43 44566554 2256777766554
No 324
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=26.13 E-value=1e+02 Score=27.59 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=47.8
Q ss_pred CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEecee--ccCCCCccccccccccccceeEeecCCeEEEEEecC
Q 012713 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~--L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~ 85 (458)
.+|+.+.-..+.++.++.. .--..+.|.|+.+|.. +=|..+-++|.+....--....-+..+|.+.|...+
T Consensus 44 ~tG~~~e~~f~~~~kve~~-------~~e~~~~q~ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~v~v~~~~ 116 (184)
T TIGR00038 44 LTGKVLEKTFRSGEKVEKA-------DVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEVSVTFYN 116 (184)
T ss_pred CCCCEEEEEeCCCCEEEcc-------cEEeEEEEEEEECCCEEEEeCCCCccceEcCHHHHHHHHhhcCCCCEEEEEEEC
Confidence 5788777777777743331 1112345777777743 234556666666543211122234567888888888
Q ss_pred CcEEEEEEcC
Q 012713 86 GKTITLEVES 95 (458)
Q Consensus 86 g~~~~l~v~~ 95 (458)
|+.+.++++.
T Consensus 117 ~~~i~v~lP~ 126 (184)
T TIGR00038 117 GEPIGVELPN 126 (184)
T ss_pred CEEEEEECCC
Confidence 8877766653
No 325
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=25.88 E-value=1.9e+02 Score=28.59 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=48.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhc--------------C-CCCCceEEEEcCeecCCCCCccccC---CCCCCEEEEEEEec
Q 012713 393 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRLR 454 (458)
Q Consensus 393 ~~i~v~~~~tV~~lK~~i~~~~--------------~-~~~~~q~Li~~G~~L~d~~tl~~~~---i~~~~~i~~~~~~~ 454 (458)
..+.......|..++..|.+++ . -|.+...|.|+|++|..+.||+... =+.+.-|.|..|.+
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3677778888999999999988 2 3567788999999999999988764 25566666888765
Q ss_pred C
Q 012713 455 G 455 (458)
Q Consensus 455 ~ 455 (458)
+
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 4
No 326
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=25.56 E-value=2.4e+02 Score=22.41 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.8
Q ss_pred EEccCCceEEEEeeccchHHHHHHHHhhhhCCCC-CceEEE
Q 012713 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 272 (458)
Q Consensus 233 v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~-~~q~L~ 272 (458)
|...++-..++.+..+.||++|-.++..+..++. ..++|.
T Consensus 7 IFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 7 VFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 4445566678888899999999999999998877 335544
No 327
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.46 E-value=61 Score=33.02 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=46.9
Q ss_pred eeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEE
Q 012713 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~ 222 (458)
++.+-+-|-.++...|.++.||+-+..+.+-+|+.|.-.+||++-|+.....+.+.
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~ 109 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVA 109 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHH
Confidence 34445667789999999999999999999999999999999999998876655443
No 328
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=25.25 E-value=2.3e+02 Score=19.98 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=38.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
|.|.+++|+. .+++.+.|+.++=+.|....+-. --.-..+|+...-+. -+++|++|.++
T Consensus 1 I~v~lpdG~~--~~~~~g~T~~d~A~~I~~~l~~~--~~~A~Vng~~vdl~~-----~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSI--KELPEGSTVLDVAYSIHSSLAKR--AVAAKVNGQLVDLDH-----PLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCE--EEEETTBBHHHHHHHHSHHHHHC--EEEEEETTEEEETTS-----BB-SSEEEEEE
T ss_pred CEEECCCCCe--eeCCCCCCHHHHHHHHCHHHHhh--eeEEEEcCEECCCCC-----CcCCCCEEEEE
Confidence 4566788886 45889999999999999875421 122235676655444 45567777653
No 329
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=25.22 E-value=1.7e+02 Score=23.64 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---CceEEEEcC
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG 427 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~---~~q~Li~~G 427 (458)
++|-..+|++-.+.|....+-.++|+++-+++|.+. +.-..+.+|
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc
Confidence 566677899999999999999999999999999876 445555566
No 330
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=25.08 E-value=3e+02 Score=20.61 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=50.4
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+.|......-.+-+-.++++++++..--+|- .|--++-.+|-..+-++.|+.+.++=|-|-|
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG 82 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence 46788888888888889999999887666665 4777888889999889999999887676544
No 331
>PRK12426 elongation factor P; Provisional
Probab=24.59 E-value=68 Score=28.80 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=52.8
Q ss_pred CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceec--cCCCCccccccccccccceeEeecCCeEEEEEecC
Q 012713 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L--~d~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~ 85 (458)
.+|+.+.-...++|+++.. .+. ..+.|.|+-+|..+ =|..+.+.+.+....-=.-..-+.++|.+.|...+
T Consensus 45 ~tG~~~e~tf~s~ek~e~a--~ve-----~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~~~ 117 (185)
T PRK12426 45 DSDVVVERNFKAGQEVKEA--QFE-----PRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYD 117 (185)
T ss_pred CCCCeEEEEECCCCeEEEe--EEE-----eeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEEEC
Confidence 5788888888888887653 222 23458898888764 35567777777653221112224567888888888
Q ss_pred CcEEEEEEcC
Q 012713 86 GKTITLEVES 95 (458)
Q Consensus 86 g~~~~l~v~~ 95 (458)
|+.+.++++.
T Consensus 118 ~~~i~v~lP~ 127 (185)
T PRK12426 118 GTVFSVELPH 127 (185)
T ss_pred CEEEEEECCC
Confidence 8877766554
No 332
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=24.56 E-value=2.7e+02 Score=21.19 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHhCCCccCeEEE--ecCeecccCccccccccCCCCEEEEEEE
Q 012713 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 173 ~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d~~tL~~~~i~~~s~i~l~~~ 224 (458)
.+..+|+.+..++++++.+.-+|. -+|...+|+.-+.. + +..|..+++.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEEC
Confidence 689999999999999997666665 47888877654333 2 2344545544
No 333
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=23.96 E-value=1.5e+02 Score=22.80 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=37.3
Q ss_pred eeccCCCcHHHHHHHHHHHhCCCc-------cCeEEEecCe-ec------ccCccccccccCCCCEEEEEE
Q 012713 167 LEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGK-QL------EDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~-------~~q~L~~~g~-~L------~d~~tL~~~~i~~~s~i~l~~ 223 (458)
++++++.|..++-+.+.++-.+.. ..-.|++.+- .| +=+++|.+. +.+|..|.+.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 578999999999999988743332 3333443322 12 236789999 89998887753
No 334
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=22.84 E-value=1.4e+02 Score=21.70 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=26.3
Q ss_pred ccccccccCCCCEEEEEEEecCCeEEEEEccCCceEEEE
Q 012713 206 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 244 (458)
Q Consensus 206 ~tL~~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~i~~~ 244 (458)
.-|.+.|+.+|+.+.+.-+...+-++.+... |..+.+.
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~~-~~~i~L~ 63 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKVD-GSRIALS 63 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEET-TEEEEES
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEEC-CEEEEcC
Confidence 3578899999999999977665666666654 5555543
No 335
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=22.81 E-value=2.8e+02 Score=22.29 Aligned_cols=75 Identities=11% Similarity=0.171 Sum_probs=44.9
Q ss_pred cCCeEEEEEecCCcE------EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEE-ecCeecCCCcchhhcc---cccccce
Q 012713 74 RGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYN---IQKESTL 143 (458)
Q Consensus 74 ~~~~~i~vk~~~g~~------~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~-~~g~~L~d~~tl~~y~---i~~~s~i 143 (458)
++.+.|.|.-..+.. ..+-|+.+.||.++...|..+..+++++=.++ .++.....+.++++.. -.++..+
T Consensus 14 P~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFL 93 (104)
T PF02991_consen 14 PDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFL 93 (104)
T ss_dssp TTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSE
T ss_pred CCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeE
Confidence 445666665433222 23458999999999999999999988653334 4554456777887742 2345556
Q ss_pred eEEEE
Q 012713 144 HLVLR 148 (458)
Q Consensus 144 ~l~~~ 148 (458)
++...
T Consensus 94 Y~~Ys 98 (104)
T PF02991_consen 94 YMTYS 98 (104)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 65543
No 336
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.52 E-value=2.1e+02 Score=21.70 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=29.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L 423 (458)
..++|.|++..+=.++|+.++.-+++.+...+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 579999999999999999999999998876654
No 337
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=22.38 E-value=1.3e+02 Score=27.01 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=27.4
Q ss_pred cccccceeEeecCCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhC
Q 012713 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 111 (458)
Q Consensus 63 ~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g 111 (458)
-|+|+|++..-.+.-++.+ .-.+.|.+.||++.+-++++..+.
T Consensus 140 ~GctvHfV~EevD~G~iI~------q~~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 140 SGCTVHFVIEEVDTGPIIA------QMAVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred ccceEEEehhhccCCCceE------EEeeeecCCCCHHHHHHHHHHHHH
Confidence 4555666554333222222 124678999999999999987664
No 338
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=21.52 E-value=1.1e+02 Score=23.34 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEEcCCCCHHHHHHHHhHHh
Q 012713 89 ITLEVESSDTIDNVKAKIQDKE 110 (458)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~ 110 (458)
++++++.+.|+.++|..+.+.-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4688999999999999998753
No 339
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=3.6e+02 Score=20.17 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=45.3
Q ss_pred eeccCCCcHHHHHHHHHHHhCCCccCeEEE-ecCeecccCccccccccCCCCEEEEEEEec
Q 012713 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~ 226 (458)
+.|+.+.....+-+.-++.+.+|+.--.++ .+|--.+..++-...-++.||.+.+..+-+
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdr 91 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 91 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccc
Confidence 556677777777777788889988765555 667777888888888888999998877654
No 340
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.97 E-value=1.9e+02 Score=22.60 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=33.1
Q ss_pred cEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE-ecCee
Q 012713 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 201 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~ 201 (458)
..+++.|++..|=.++|+.++..+|+++..-+-. +.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 5799999999999999999999999998776544 56653
No 341
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=20.96 E-value=3.2e+02 Score=27.57 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=50.8
Q ss_pred eeEEEeccCcEEEeeccCCCcHHHHHHHHHHHh--CCCccCeEEEec----Cee--cccCccccccccCCCCEEEEEE
Q 012713 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~--gip~~~q~L~~~----g~~--L~d~~tL~~~~i~~~s~i~l~~ 223 (458)
-+.++...| ...+++.++++.+-|-.++-..+ +..+++..+.-+ |.. +..++|+.+.|+..|..++|..
T Consensus 2 i~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 344555554 57899999999999988887654 445666666632 221 4567999999999999999887
No 342
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=20.82 E-value=72 Score=24.09 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=22.0
Q ss_pred HHHHHhCCCccCeEEE---ecCeecccCccccccccCC
Q 012713 181 KIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQK 215 (458)
Q Consensus 181 ~I~~~~gip~~~q~L~---~~g~~L~d~~tL~~~~i~~ 215 (458)
.|.++..+.|..-.|. ..+.+|+-.++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 4788888888888888 4678899999999999986
No 343
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=20.81 E-value=1.4e+02 Score=22.30 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=42.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCcccc--CCCCCCEEEEEEEecC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLRG 455 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~--~i~~~~~i~~~~~~~~ 455 (458)
......|.++.. +++.|+.+.+..+-.+|+.+.+...+..+ ....|+.+.+.+.+.+
T Consensus 15 g~~V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 15 GVVVVSVIPGSP--------AAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp SEEEEEESTTSH--------HHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred eEEEEEeCCCCc--------HHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 445566777763 45678999999999999999777666554 5688999998887654
No 344
>PRK00529 elongation factor P; Validated
Probab=20.75 E-value=1.8e+02 Score=26.16 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=47.0
Q ss_pred CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEecee--ccCCCCccccccccccccceeEeecCCeEEEEEecC
Q 012713 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~--L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~ 85 (458)
.+|+.+....+.++.++.. .+ -..+.|.|+.+|.. +=|..+-++|.+....--....-+.++|.+.|...+
T Consensus 45 ~tG~~~e~~f~~~e~ve~~--~v-----e~~~~q~ly~dgd~~~fMD~etyeq~~l~~~~lg~~~~~L~eg~~v~v~~~~ 117 (186)
T PRK00529 45 LTGSVVEKTFKAGDKVERA--DV-----ERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYN 117 (186)
T ss_pred CCCCeEEEEeCCCCEEEec--cE-----EeEEEEEEEECCCEEEEecCCCceeeEcCHHHhHHHHhhccCCCEEEEEEEC
Confidence 5677777777777764332 11 12345778877743 334456666666544211111224567888888888
Q ss_pred CcEEEEEEcC
Q 012713 86 GKTITLEVES 95 (458)
Q Consensus 86 g~~~~l~v~~ 95 (458)
|+.+.++++.
T Consensus 118 ~~~i~v~lP~ 127 (186)
T PRK00529 118 GEPISVELPN 127 (186)
T ss_pred CEEEEEECCC
Confidence 8877766654
No 345
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=20.40 E-value=2e+02 Score=22.68 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceE-EEEcCe
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 428 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~-Li~~G~ 428 (458)
....++|.|++..|=.++|+.+++-+|+.+.... |+..|+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 3467899999999999999999999998776665 444443
No 346
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=20.16 E-value=2.1e+02 Score=23.21 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcEE--EEEecCCccHHHHHHHhhcccCC
Q 012713 1 MQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEGI 36 (458)
Q Consensus 1 ~~i~~~~~~g~~~--~~~v~~~dtv~~~K~~i~~~~gi 36 (458)
|..|++..++|-- .+.|.+++|+.++-+.+-+|.-+
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~ 61 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRP 61 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcc
Confidence 6789999888744 49999999999999999888774
No 347
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=78 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=16.0
Q ss_pred ecCC-CCCcccccccCCCeEEEE
Q 012713 353 QLED-GRTLADYNIQKESTLHLV 374 (458)
Q Consensus 353 ~L~~-~~~l~~y~I~~~~~l~l~ 374 (458)
.|.+ .++|+.|||.+.-.|.+.
T Consensus 89 ~L~d~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 89 LLKDEDKTLKAAGIENETEISFF 111 (127)
T ss_pred eecCccchHHHhccCcchhhhhh
Confidence 5554 778999999887766554
Done!