Query 012713
Match_columns 458
No_of_seqs 518 out of 2830
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.7E-35 5.7E-40 260.7 17.5 152 1-152 3-157 (159)
2 3rt3_B Ubiquitin-like protein 100.0 1.1E-34 3.9E-39 255.3 19.0 153 305-457 3-158 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 7.9E-35 2.7E-39 259.5 15.9 152 1-152 21-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 8.3E-34 2.8E-38 252.9 17.8 155 302-456 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 7.6E-33 2.6E-37 241.9 17.9 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 3.5E-32 1.2E-36 237.7 19.4 152 305-456 1-152 (152)
7 3plu_A Ubiquitin-like modifier 99.8 1.5E-19 5.2E-24 139.8 10.4 79 373-451 14-92 (93)
8 3plu_A Ubiquitin-like modifier 99.8 4.9E-20 1.7E-24 142.5 7.4 70 1-70 22-91 (93)
9 3phx_B Ubiquitin-like protein 99.8 9.4E-19 3.2E-23 134.6 11.0 78 378-455 2-79 (79)
10 4eew_A Large proline-rich prot 99.8 5.7E-19 2E-23 138.7 9.9 88 364-452 1-88 (88)
11 2kdi_A Ubiquitin, vacuolar pro 99.8 8.2E-20 2.8E-24 150.3 3.0 104 150-253 7-113 (114)
12 3phx_B Ubiquitin-like protein 99.8 7.7E-19 2.6E-23 135.1 7.9 75 1-75 5-79 (79)
13 4fbj_B NEDD8; effector-HOST ta 99.8 1.4E-18 4.7E-23 136.4 9.2 77 381-457 1-77 (88)
14 2uyz_B Small ubiquitin-related 99.8 2.2E-18 7.5E-23 132.5 9.1 77 380-456 3-79 (79)
15 2lxa_A Ubiquitin-like protein 99.7 9.7E-19 3.3E-23 135.9 6.3 73 1-73 2-78 (87)
16 4fbj_B NEDD8; effector-HOST ta 99.7 1.6E-18 5.5E-23 136.0 7.6 77 1-77 1-77 (88)
17 1uh6_A Ubiquitin-like 5; beta- 99.7 8E-19 2.7E-23 138.7 5.7 70 1-70 29-98 (100)
18 2kdi_A Ubiquitin, vacuolar pro 99.7 2.4E-19 8.2E-24 147.5 2.7 104 74-177 7-113 (114)
19 3dbh_I NEDD8; cell cycle, acti 99.7 3.9E-18 1.3E-22 133.9 9.2 79 378-456 10-88 (88)
20 1wyw_B Ubiquitin-like protein 99.7 4.3E-18 1.5E-22 136.0 9.5 79 378-456 19-97 (97)
21 4hcn_B Polyubiquitin, ubiquiti 99.7 5.2E-18 1.8E-22 135.9 9.5 79 378-456 20-98 (98)
22 2kk8_A Uncharacterized protein 99.7 2.2E-18 7.4E-23 133.7 6.8 73 1-73 11-84 (84)
23 1ndd_A NEDD8, protein (ubiquit 99.7 9.6E-18 3.3E-22 127.8 10.3 76 381-456 1-76 (76)
24 4eew_A Large proline-rich prot 99.7 6.4E-18 2.2E-22 132.7 9.4 87 61-148 2-88 (88)
25 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.1E-17 3.7E-22 131.1 10.5 81 378-458 5-85 (87)
26 1yx5_B Ubiquitin; proteasome, 99.7 5.2E-18 1.8E-22 136.0 8.4 91 1-91 1-91 (98)
27 4dwf_A HLA-B-associated transc 99.7 1.3E-17 4.4E-22 131.5 10.2 78 378-456 3-80 (90)
28 3a9j_A Ubiquitin; protein comp 99.7 1.8E-17 6.3E-22 126.2 10.5 76 381-456 1-76 (76)
29 3n3k_B Ubiquitin; hydrolase, p 99.7 1E-17 3.5E-22 130.7 9.2 79 379-457 2-80 (85)
30 4ajy_B Transcription elongatio 99.7 4E-18 1.4E-22 137.8 7.0 75 1-75 1-83 (118)
31 2hj8_A Interferon-induced 17 k 99.7 8.8E-18 3E-22 131.8 8.6 79 379-457 3-81 (88)
32 2fnj_B Transcription elongatio 99.7 3.7E-18 1.3E-22 138.7 6.4 72 1-72 1-80 (118)
33 2uyz_B Small ubiquitin-related 99.7 4.2E-18 1.4E-22 130.9 6.2 76 1-76 4-79 (79)
34 1wy8_A NP95-like ring finger p 99.7 2.8E-17 9.6E-22 129.3 10.9 80 378-457 5-86 (89)
35 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.1E-17 7.3E-22 128.8 10.1 79 379-457 2-80 (85)
36 2kan_A Uncharacterized protein 99.7 2.1E-17 7.4E-22 131.0 10.2 80 377-457 12-92 (94)
37 1sif_A Ubiquitin; hydrophobic 99.7 1.6E-17 5.3E-22 130.3 9.3 79 379-457 8-86 (88)
38 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.4E-17 8.1E-22 131.7 10.4 78 380-457 1-78 (96)
39 4a20_A Ubiquitin-like protein 99.7 2.1E-17 7.1E-22 131.3 9.5 78 377-454 16-97 (98)
40 3v6c_B Ubiquitin; structural g 99.7 2.8E-17 9.5E-22 129.9 10.1 77 378-454 15-91 (91)
41 1wyw_B Ubiquitin-like protein 99.7 7.3E-18 2.5E-22 134.7 6.4 76 1-76 22-97 (97)
42 3vdz_A Ubiquitin-40S ribosomal 99.7 3.7E-17 1.3E-21 133.8 10.6 78 379-456 34-111 (111)
43 2kk8_A Uncharacterized protein 99.7 2.7E-17 9.1E-22 127.5 9.1 74 379-452 9-83 (84)
44 2wyq_A HHR23A, UV excision rep 99.7 5.2E-17 1.8E-21 126.6 10.8 79 378-456 3-84 (85)
45 1uh6_A Ubiquitin-like 5; beta- 99.7 1.9E-17 6.3E-22 130.9 8.2 72 380-451 28-99 (100)
46 2ojr_A Ubiquitin; lanthide-bin 99.7 2.5E-17 8.5E-22 135.0 8.9 93 364-456 11-111 (111)
47 1ndd_A NEDD8, protein (ubiquit 99.7 2.3E-17 7.9E-22 125.7 8.1 76 1-76 1-76 (76)
48 4dwf_A HLA-B-associated transc 99.7 1.7E-17 5.7E-22 130.9 7.5 75 1-76 6-80 (90)
49 2l7r_A Ubiquitin-like protein 99.7 2.6E-17 9.1E-22 130.3 8.7 78 377-456 16-93 (93)
50 2faz_A Ubiquitin-like containi 99.7 1.8E-17 6.2E-22 127.0 7.1 73 1-73 3-77 (78)
51 1wgd_A Homocysteine-responsive 99.7 3.7E-17 1.3E-21 129.7 9.0 80 378-457 5-90 (93)
52 3dbh_I NEDD8; cell cycle, acti 99.7 1.7E-17 5.7E-22 130.3 6.8 76 1-76 13-88 (88)
53 2hj8_A Interferon-induced 17 k 99.7 1.4E-17 4.9E-22 130.6 6.2 76 1-76 5-80 (88)
54 1yx5_B Ubiquitin; proteasome, 99.7 6.6E-17 2.3E-21 129.5 10.2 91 153-243 1-91 (98)
55 1se9_A Ubiquitin family; ubiqu 99.7 3.2E-17 1.1E-21 134.8 8.3 76 1-76 17-106 (126)
56 1sif_A Ubiquitin; hydrophobic 99.7 2.7E-17 9.1E-22 129.0 7.4 76 1-76 10-85 (88)
57 3v6c_B Ubiquitin; structural g 99.7 2.5E-17 8.7E-22 130.1 7.2 74 1-74 18-91 (91)
58 2lxa_A Ubiquitin-like protein 99.7 2.7E-17 9.3E-22 127.7 7.2 73 381-453 2-78 (87)
59 2faz_A Ubiquitin-like containi 99.7 9E-17 3.1E-21 123.1 10.0 75 379-453 1-77 (78)
60 4hcn_B Polyubiquitin, ubiquiti 99.7 3.2E-17 1.1E-21 131.3 7.6 76 1-76 23-98 (98)
61 3l0w_B Monoubiquitinated proli 99.7 2.8E-17 9.7E-22 144.6 7.9 100 1-100 1-103 (169)
62 1wju_A NEDD8 ultimate buster-1 99.7 9.6E-17 3.3E-21 126.8 9.9 73 383-456 18-94 (100)
63 1yqb_A Ubiquilin 3; structural 99.7 9.2E-17 3.2E-21 128.8 9.7 80 377-457 19-98 (100)
64 1wgh_A Ubiquitin-like 3, HCG-1 99.7 5.5E-17 1.9E-21 132.4 8.4 75 1-75 17-101 (116)
65 3m63_B Ubiquitin domain-contai 99.7 1.5E-17 5E-22 133.7 4.8 93 357-452 7-99 (101)
66 3n3k_B Ubiquitin; hydrolase, p 99.7 4.2E-17 1.4E-21 127.1 7.3 76 1-76 4-79 (85)
67 2kan_A Uncharacterized protein 99.7 4.3E-17 1.5E-21 129.2 7.4 75 1-76 16-91 (94)
68 4a20_A Ubiquitin-like protein 99.7 4.7E-17 1.6E-21 129.2 7.5 73 1-73 20-96 (98)
69 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 6.1E-17 2.1E-21 129.3 8.1 79 1-79 2-80 (96)
70 1uel_A HHR23B, UV excision rep 99.7 2E-16 6.7E-21 125.9 11.0 75 381-455 1-78 (95)
71 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 5.2E-17 1.8E-21 127.2 7.4 76 1-76 8-83 (87)
72 3a9j_A Ubiquitin; protein comp 99.7 8.2E-17 2.8E-21 122.6 8.2 76 1-76 1-76 (76)
73 3m62_B UV excision repair prot 99.7 7.9E-17 2.7E-21 130.7 8.3 75 381-455 2-76 (106)
74 2fnj_B Transcription elongatio 99.7 9.7E-17 3.3E-21 130.4 8.2 77 381-458 1-85 (118)
75 3q3f_A Ribonuclease/ubiquitin 99.7 2.5E-17 8.6E-22 146.3 5.0 82 1-82 106-187 (189)
76 3b1l_X E3 ubiquitin-protein li 99.5 4.3E-18 1.5E-22 129.9 0.0 75 1-75 1-75 (76)
77 3m62_B UV excision repair prot 99.7 6E-17 2.1E-21 131.4 6.7 74 1-74 2-75 (106)
78 1wy8_A NP95-like ring finger p 99.7 1.1E-16 3.6E-21 126.0 7.8 76 1-76 8-85 (89)
79 3mtn_B UBA80, ubcep1, ubiquiti 99.7 9.4E-17 3.2E-21 125.1 7.4 76 1-76 4-79 (85)
80 1v2y_A 3300001G02RIK protein; 99.7 2.2E-17 7.5E-22 132.3 3.8 76 1-76 8-99 (105)
81 3l0w_B Monoubiquitinated proli 99.7 2.2E-16 7.7E-21 138.8 10.7 77 381-457 1-77 (169)
82 2dzi_A Ubiquitin-like protein 99.7 2.1E-16 7.1E-21 122.0 9.3 76 378-453 5-80 (81)
83 1v2y_A 3300001G02RIK protein; 99.7 7.4E-17 2.5E-21 129.2 6.6 79 378-456 5-99 (105)
84 2l7r_A Ubiquitin-like protein 99.7 8.1E-17 2.8E-21 127.5 6.7 74 1-76 20-93 (93)
85 1se9_A Ubiquitin family; ubiqu 99.7 2.4E-16 8.1E-21 129.7 9.6 86 372-457 8-107 (126)
86 1uel_A HHR23B, UV excision rep 99.7 2.1E-16 7.2E-21 125.7 8.9 74 1-74 1-77 (95)
87 3vdz_A Ubiquitin-40S ribosomal 99.7 1.4E-16 4.7E-21 130.4 7.8 76 1-76 36-111 (111)
88 1we6_A Splicing factor, putati 99.7 1.6E-16 5.6E-21 130.1 8.2 81 377-457 24-108 (111)
89 2klc_A Ubiquilin-1; ubiquitin- 99.7 5.4E-16 1.8E-20 124.6 11.0 81 376-457 21-101 (101)
90 1wx8_A Riken cDNA 4931431F19; 99.7 1.3E-16 4.3E-21 127.4 7.1 79 378-457 15-93 (96)
91 4ajy_B Transcription elongatio 99.7 2.3E-16 8E-21 127.5 8.7 77 381-458 1-85 (118)
92 1ttn_A DC-UBP, dendritic cell- 99.7 2.9E-16 9.9E-21 127.5 9.2 80 378-457 21-100 (106)
93 2wyq_A HHR23A, UV excision rep 99.7 2E-16 6.8E-21 123.3 7.8 73 1-73 6-81 (85)
94 2gow_A HCG-1 protein, ubiquiti 99.7 1.5E-16 5.2E-21 131.6 7.4 75 1-75 18-102 (125)
95 2dzi_A Ubiquitin-like protein 99.6 2.6E-16 8.8E-21 121.4 8.2 73 1-73 8-80 (81)
96 3b1l_X E3 ubiquitin-protein li 99.5 9.9E-18 3.4E-22 127.8 0.0 75 381-455 1-75 (76)
97 3q3f_A Ribonuclease/ubiquitin 99.6 3.6E-16 1.2E-20 138.9 9.8 82 376-457 101-182 (189)
98 1wgh_A Ubiquitin-like 3, HCG-1 99.6 7.4E-16 2.5E-20 125.7 10.7 80 377-456 13-102 (116)
99 1wgd_A Homocysteine-responsive 99.6 2.2E-16 7.5E-21 125.2 7.0 76 1-76 8-89 (93)
100 1wju_A NEDD8 ultimate buster-1 99.6 2.3E-16 7.9E-21 124.6 7.0 65 10-75 29-93 (100)
101 1wx7_A Ubiquilin 3; ubiquitin- 99.6 6.6E-16 2.3E-20 125.4 9.8 79 378-457 15-93 (106)
102 4dbg_A Ranbp-type and C3HC4-ty 99.6 2.8E-16 9.5E-21 125.1 7.3 73 1-73 25-100 (105)
103 1v5o_A 1700011N24RIK protein; 99.6 4.4E-16 1.5E-20 125.5 8.4 79 379-457 6-89 (102)
104 1j8c_A Ubiquitin-like protein 99.6 8.9E-16 3.1E-20 128.0 10.5 78 379-457 31-108 (125)
105 2bwf_A Ubiquitin-like protein 99.6 1.1E-15 3.9E-20 116.6 10.2 72 380-452 4-75 (77)
106 2gow_A HCG-1 protein, ubiquiti 99.6 8.6E-16 2.9E-20 127.1 9.5 79 378-456 15-103 (125)
107 1ttn_A DC-UBP, dendritic cell- 99.6 3.9E-16 1.3E-20 126.8 6.8 74 1-74 24-97 (106)
108 2bwf_A Ubiquitin-like protein 99.6 5.8E-16 2E-20 118.2 7.4 71 1-72 5-75 (77)
109 1we7_A SF3A1 protein; structur 99.6 1.2E-15 4.2E-20 125.7 9.5 80 378-457 23-112 (115)
110 3u5e_m 60S ribosomal protein L 99.6 4E-17 1.4E-21 137.3 0.3 78 381-458 1-78 (128)
111 2kdb_A Homocysteine-responsive 99.6 3.7E-16 1.3E-20 124.4 5.6 70 1-70 24-99 (99)
112 3m63_B Ubiquitin domain-contai 99.6 4.1E-16 1.4E-20 125.2 5.4 93 129-224 7-99 (101)
113 2ojr_A Ubiquitin; lanthide-bin 99.6 1.9E-15 6.6E-20 123.7 9.0 78 151-228 34-111 (111)
114 3u5e_m 60S ribosomal protein L 99.6 6E-17 2.1E-21 136.2 0.0 76 1-76 1-76 (128)
115 1yqb_A Ubiquilin 3; structural 99.6 8.5E-16 2.9E-20 123.2 6.7 74 1-75 23-96 (100)
116 2kdb_A Homocysteine-responsive 99.6 1.2E-15 4.2E-20 121.4 7.4 73 378-450 21-99 (99)
117 1we6_A Splicing factor, putati 99.6 7.9E-16 2.7E-20 126.0 6.3 76 1-76 28-107 (111)
118 1wx8_A Riken cDNA 4931431F19; 99.6 6.3E-16 2.2E-20 123.3 5.6 75 1-76 18-92 (96)
119 3u5c_f 40S ribosomal protein S 99.6 7.8E-17 2.7E-21 138.5 0.0 76 1-76 1-76 (152)
120 4dbg_A Ranbp-type and C3HC4-ty 99.6 4.9E-15 1.7E-19 117.9 10.2 74 380-453 24-100 (105)
121 3u5c_f 40S ribosomal protein S 99.6 1.2E-16 4.2E-21 137.2 0.0 77 381-457 1-77 (152)
122 2daf_A FLJ35834 protein; hypot 99.6 7.7E-15 2.6E-19 117.7 10.2 74 381-454 16-90 (118)
123 1j8c_A Ubiquitin-like protein 99.6 2.6E-15 9E-20 125.2 7.8 75 1-76 33-107 (125)
124 2klc_A Ubiquilin-1; ubiquitin- 99.6 3.1E-15 1E-19 120.2 7.8 73 1-74 26-98 (101)
125 2xzm_9 RPS31E; ribosome, trans 99.6 1.7E-16 6E-21 139.7 0.0 71 1-76 1-71 (189)
126 1wia_A Hypothetical ubiquitin- 99.6 6E-15 2.1E-19 117.3 8.7 74 379-455 6-80 (95)
127 1v5o_A 1700011N24RIK protein; 99.6 2.8E-15 9.7E-20 120.7 5.9 76 1-76 8-88 (102)
128 1wx7_A Ubiquilin 3; ubiquitin- 99.6 4.5E-15 1.5E-19 120.5 7.0 74 1-75 18-91 (106)
129 1x1m_A Ubiquitin-like protein 99.6 1.2E-14 4.3E-19 118.0 9.3 78 379-456 11-103 (107)
130 2io1_B Small ubiquitin-related 99.5 1.9E-14 6.5E-19 113.4 9.6 80 378-457 5-84 (94)
131 2dzj_A Synaptic glycoprotein S 99.5 4E-15 1.4E-19 116.1 5.0 69 1-69 11-85 (88)
132 1v5t_A 8430435I17RIK protein; 99.5 1.5E-14 5.1E-19 113.7 8.0 75 378-453 5-83 (90)
133 1wia_A Hypothetical ubiquitin- 99.5 1.4E-14 4.9E-19 115.1 7.3 72 1-75 8-80 (95)
134 2kd0_A LRR repeats and ubiquit 99.5 2.6E-14 8.8E-19 111.0 8.5 70 383-452 14-83 (85)
135 1we7_A SF3A1 protein; structur 99.5 3E-14 1E-18 117.4 9.3 79 74-152 23-111 (115)
136 2dzm_A FAS-associated factor 1 99.5 6.6E-15 2.3E-19 117.0 5.1 72 1-73 9-82 (100)
137 1wxv_A BAG-family molecular ch 99.5 4.2E-14 1.4E-18 111.7 9.2 76 378-454 5-86 (92)
138 2kd0_A LRR repeats and ubiquit 99.5 1.9E-14 6.5E-19 111.7 7.0 70 3-72 14-83 (85)
139 2io0_B Small ubiquitin-related 99.5 8.7E-14 3E-18 108.8 10.4 81 378-458 3-83 (91)
140 1v5t_A 8430435I17RIK protein; 99.5 1.6E-14 5.3E-19 113.6 5.9 72 1-73 8-83 (90)
141 4b6w_A Tubulin-specific chaper 99.5 2.5E-14 8.5E-19 110.9 6.9 65 8-72 12-83 (86)
142 1wgg_A Ubiquitin carboxyl-term 99.5 2.9E-14 1E-18 113.2 7.2 73 379-453 6-79 (96)
143 2kjr_A CG11242; UBL, ubiquitin 99.5 3.5E-14 1.2E-18 112.1 7.2 71 1-71 16-94 (95)
144 1wgg_A Ubiquitin carboxyl-term 99.5 2.5E-14 8.6E-19 113.6 6.1 71 1-73 8-79 (96)
145 1x1m_A Ubiquitin-like protein 99.5 3.2E-14 1.1E-18 115.5 6.7 73 1-73 13-100 (107)
146 2daf_A FLJ35834 protein; hypot 99.5 9.4E-14 3.2E-18 111.4 8.6 77 76-152 15-92 (118)
147 2dzj_A Synaptic glycoprotein S 99.5 5.1E-14 1.7E-18 109.8 6.4 70 380-449 10-85 (88)
148 1v86_A DNA segment, CHR 7, way 99.5 4.3E-14 1.5E-18 112.1 5.7 74 379-454 16-89 (95)
149 2dzm_A FAS-associated factor 1 99.5 8.5E-14 2.9E-18 110.6 7.2 73 76-149 8-82 (100)
150 2xzm_9 RPS31E; ribosome, trans 99.5 6.1E-15 2.1E-19 129.9 0.0 72 381-457 1-72 (189)
151 4b6w_A Tubulin-specific chaper 99.5 2E-13 6.8E-18 105.8 8.5 66 388-453 12-84 (86)
152 2kjr_A CG11242; UBL, ubiquitin 99.5 2.6E-13 8.8E-18 107.1 9.3 73 378-450 13-93 (95)
153 3ai5_A Yeast enhanced green fl 99.4 2.6E-13 8.8E-18 129.2 10.0 78 377-454 230-307 (307)
154 2d07_B Ubiquitin-like protein 99.4 5.5E-13 1.9E-17 104.9 9.9 79 378-456 15-93 (93)
155 1wxv_A BAG-family molecular ch 99.4 1.6E-13 5.5E-18 108.3 6.7 72 1-73 8-85 (92)
156 3ai5_A Yeast enhanced green fl 99.4 1.3E-13 4.4E-18 131.2 7.1 73 1-73 234-306 (307)
157 2kj6_A Tubulin folding cofacto 99.4 1.6E-13 5.5E-18 108.6 6.2 70 2-71 16-94 (97)
158 1oqy_A HHR23A, UV excision rep 99.4 1.9E-13 6.4E-18 133.9 7.9 78 379-456 6-87 (368)
159 1v86_A DNA segment, CHR 7, way 99.4 2.8E-13 9.5E-18 107.4 6.8 72 75-148 16-87 (95)
160 1wz0_A Ubiquitin-like protein 99.4 4.8E-13 1.6E-17 107.1 8.2 81 378-458 22-102 (104)
161 2kj6_A Tubulin folding cofacto 99.4 8.3E-13 2.8E-17 104.5 8.7 72 380-451 14-94 (97)
162 2io1_B Small ubiquitin-related 99.4 4.5E-13 1.5E-17 105.5 6.8 76 1-76 8-83 (94)
163 1oqy_A HHR23A, UV excision rep 99.4 3.4E-13 1.2E-17 132.1 7.3 75 1-75 8-86 (368)
164 2eke_C Ubiquitin-like protein 99.4 2E-12 6.7E-17 103.6 9.2 78 378-456 29-106 (106)
165 1wf9_A NPL4 family protein; be 99.4 4.4E-13 1.5E-17 108.7 4.7 71 1-72 8-94 (107)
166 1wm3_A Ubiquitin-like protein 99.3 3.5E-12 1.2E-16 95.5 9.0 70 381-450 2-71 (72)
167 2k8h_A Small ubiquitin protein 99.3 1.5E-12 5.1E-17 105.0 6.7 79 378-456 24-102 (110)
168 1wf9_A NPL4 family protein; be 99.3 1.7E-12 5.8E-17 105.2 6.7 72 380-452 7-94 (107)
169 3a4r_A Nfatc2-interacting prot 99.3 8.4E-12 2.9E-16 95.1 10.0 74 377-450 4-78 (79)
170 1v6e_A Cytoskeleton-associated 99.3 1.9E-12 6.4E-17 102.7 6.5 70 2-71 9-86 (95)
171 1v6e_A Cytoskeleton-associated 99.3 5E-12 1.7E-16 100.2 7.9 71 381-451 8-86 (95)
172 2io0_B Small ubiquitin-related 99.3 6.7E-12 2.3E-16 98.0 7.8 76 1-76 6-81 (91)
173 1t0y_A Tubulin folding cofacto 99.3 1.5E-11 5.3E-16 102.0 9.8 74 379-452 5-86 (122)
174 1t0y_A Tubulin folding cofacto 99.3 6.8E-12 2.3E-16 104.1 7.5 72 1-72 7-86 (122)
175 1wm3_A Ubiquitin-like protein 99.2 1.3E-11 4.5E-16 92.3 6.8 70 1-70 2-71 (72)
176 2d07_B Ubiquitin-like protein 99.2 2.2E-11 7.5E-16 95.7 7.3 75 1-75 18-92 (93)
177 2kzr_A Ubiquitin thioesterase 99.2 1.5E-11 5.2E-16 95.5 5.9 70 381-451 1-76 (86)
178 2kzr_A Ubiquitin thioesterase 99.2 1.4E-11 4.9E-16 95.7 4.8 71 1-72 1-77 (86)
179 1wz0_A Ubiquitin-like protein 99.2 2.9E-11 1E-15 96.7 6.1 76 1-76 25-100 (104)
180 2k8h_A Small ubiquitin protein 99.1 2.6E-11 8.9E-16 97.8 4.7 77 1-77 27-103 (110)
181 3shq_A UBLCP1; phosphatase, hy 99.1 5.1E-11 1.7E-15 115.1 7.3 73 379-452 4-79 (320)
182 3a4r_A Nfatc2-interacting prot 99.1 2.9E-10 1E-14 86.5 9.9 72 75-146 6-78 (79)
183 2eke_C Ubiquitin-like protein 99.1 1.9E-10 6.6E-15 91.9 8.6 77 151-228 30-106 (106)
184 3shq_A UBLCP1; phosphatase, hy 99.1 5.9E-11 2E-15 114.6 6.6 76 75-151 4-82 (320)
185 3kyd_D Small ubiquitin-related 99.1 7.6E-10 2.6E-14 89.3 10.2 78 378-455 38-115 (115)
186 3tix_A Ubiquitin-like protein 99.0 1E-09 3.5E-14 95.1 7.2 99 358-457 33-133 (207)
187 1wjn_A Tubulin-folding protein 98.9 3.2E-09 1.1E-13 84.3 9.1 74 379-452 8-92 (97)
188 3pge_A SUMO-modified prolifera 98.9 4E-09 1.4E-13 93.8 9.9 79 378-457 27-105 (200)
189 2ylm_A Ubiquitin carboxyl-term 98.9 8E-07 2.7E-11 91.8 27.4 332 11-343 36-479 (530)
190 1wjn_A Tubulin-folding protein 98.8 9.4E-09 3.2E-13 81.5 8.4 72 153-224 10-92 (97)
191 2ylm_A Ubiquitin carboxyl-term 98.8 1.1E-05 3.7E-10 83.3 33.0 347 89-436 38-503 (530)
192 3v7o_A Minor nucleoprotein VP3 98.8 6.8E-10 2.3E-14 97.5 0.4 81 377-458 18-98 (227)
193 3kyd_D Small ubiquitin-related 98.7 4.9E-08 1.7E-12 78.7 9.6 76 151-226 39-114 (115)
194 3goe_A DNA repair protein RAD6 98.6 2E-07 6.9E-12 68.1 9.4 71 381-451 10-81 (82)
195 3pge_A SUMO-modified prolifera 98.6 1.7E-07 5.7E-12 83.3 9.2 78 150-228 27-104 (200)
196 3tix_A Ubiquitin-like protein 98.5 1.5E-07 5.2E-12 81.6 7.0 79 150-229 55-133 (207)
197 2jxx_A Nfatc2-interacting prot 98.5 5.9E-07 2E-11 70.4 9.3 74 377-450 22-96 (97)
198 3uf8_A Ubiquitin-like protein 98.4 6.9E-07 2.4E-11 80.9 8.9 82 376-458 17-98 (209)
199 2pjh_A Protein NPL4, nuclear p 98.4 1.8E-07 6.2E-12 71.0 4.1 70 379-449 3-77 (80)
200 2l76_A Nfatc2-interacting prot 98.4 2.4E-06 8.4E-11 65.6 9.5 73 379-452 20-92 (95)
201 3v7o_A Minor nucleoprotein VP3 98.3 6.5E-08 2.2E-12 85.1 0.2 82 148-230 17-98 (227)
202 3goe_A DNA repair protein RAD6 98.3 4.5E-06 1.5E-10 61.0 9.1 70 154-223 11-81 (82)
203 3ix6_A TS, tsase, thymidylate 98.2 1.4E-07 4.7E-12 91.1 0.0 80 377-457 18-97 (360)
204 2pjh_A Protein NPL4, nuclear p 98.2 1.4E-06 4.7E-11 66.1 4.6 70 152-222 4-78 (80)
205 4efo_A Serine/threonine-protei 98.1 4.9E-06 1.7E-10 64.3 7.0 54 7-60 20-75 (94)
206 3ivf_A Talin-1; FERM domain, c 98.1 0.00018 6E-09 71.1 19.2 134 162-298 12-165 (371)
207 4efo_A Serine/threonine-protei 98.0 1.5E-05 5.3E-10 61.5 7.3 55 83-137 20-76 (94)
208 3ivf_A Talin-1; FERM domain, c 98.0 0.00023 7.7E-09 70.4 17.6 136 314-452 12-167 (371)
209 2jxx_A Nfatc2-interacting prot 98.0 2.4E-05 8.3E-10 61.1 8.3 72 151-222 24-96 (97)
210 2al3_A TUG long isoform; TUG U 98.0 1.9E-05 6.7E-10 60.0 7.0 75 227-301 8-82 (90)
211 4da1_A Protein phosphatase 1K, 97.9 1.7E-06 5.7E-11 86.3 0.0 78 379-457 29-106 (389)
212 3uf8_A Ubiquitin-like protein 97.8 7.2E-05 2.5E-09 67.6 10.1 150 148-336 17-168 (209)
213 3ix6_A TS, tsase, thymidylate 97.8 3E-06 1E-10 81.8 0.0 82 148-230 17-98 (360)
214 2al3_A TUG long isoform; TUG U 97.8 9.2E-05 3.1E-09 56.3 8.1 76 150-225 7-82 (90)
215 2l76_A Nfatc2-interacting prot 97.7 0.00022 7.5E-09 54.7 8.8 71 153-224 22-92 (95)
216 2kc2_A Talin-1, F1; FERM, adhe 97.5 9.4E-05 3.2E-09 60.6 5.3 70 154-223 13-121 (128)
217 2bps_A YUKD protein; ubiquitin 97.5 0.00029 9.9E-09 52.8 6.7 69 381-449 5-80 (81)
218 2kc2_A Talin-1, F1; FERM, adhe 97.4 0.00015 5.1E-09 59.4 5.3 72 306-377 13-123 (128)
219 4da1_A Protein phosphatase 1K, 97.3 4.1E-05 1.4E-09 76.2 0.0 82 151-233 29-110 (389)
220 3qx1_A FAS-associated factor 1 96.9 0.0039 1.3E-07 47.3 8.5 70 379-449 6-80 (84)
221 2bps_A YUKD protein; ubiquitin 96.9 0.0032 1.1E-07 47.1 7.0 68 154-221 6-80 (81)
222 3qx1_A FAS-associated factor 1 96.8 0.0055 1.9E-07 46.5 7.9 70 152-222 7-81 (84)
223 4e71_A Plexin-B2, MM1; transme 96.3 0.011 3.7E-07 46.8 7.1 63 314-376 23-110 (111)
224 2dzk_A UBX domain-containing p 96.2 0.026 8.8E-07 45.0 9.1 73 379-451 12-89 (109)
225 1wj4_A KIAA0794 protein; UBX d 96.0 0.017 5.7E-07 47.2 7.1 71 378-449 41-116 (124)
226 2dzk_A UBX domain-containing p 96.0 0.029 1E-06 44.7 8.3 73 152-224 13-90 (109)
227 2r2o_A Plexin-B1; effector dom 95.9 0.018 6.3E-07 47.1 6.8 66 314-379 40-131 (138)
228 3h6n_A Plexin-D1; structural g 95.9 0.046 1.6E-06 44.1 8.8 66 312-377 14-105 (127)
229 2daj_A KIAA0977 protein, COBL- 95.8 0.038 1.3E-06 40.9 7.4 72 381-455 11-85 (91)
230 3jyu_A Ubiquitin carboxyl-term 95.7 0.028 9.6E-07 51.3 8.0 67 392-458 153-226 (231)
231 1wj4_A KIAA0794 protein; UBX d 95.6 0.085 2.9E-06 43.0 9.6 72 74-146 41-117 (124)
232 4e74_A Plexin-A4; RBD, structu 95.3 0.034 1.2E-06 44.4 6.1 64 314-377 26-115 (117)
233 4e71_A Plexin-B2, MM1; transme 95.2 0.12 4.2E-06 40.8 9.1 62 86-147 23-109 (111)
234 4a3p_A Ubiquitin carboxyl-term 95.2 0.053 1.8E-06 48.9 8.0 67 392-458 141-214 (217)
235 2cr5_A Reproduction 8; UBX dom 94.9 0.11 3.6E-06 41.4 8.1 70 380-450 23-96 (109)
236 1s3s_G P47 protein; AAA ATPase 94.8 0.089 3E-06 43.1 7.6 69 379-447 51-123 (127)
237 2cr5_A Reproduction 8; UBX dom 94.6 0.11 3.8E-06 41.3 7.6 71 152-223 23-97 (109)
238 2daj_A KIAA0977 protein, COBL- 94.5 0.077 2.6E-06 39.3 5.7 64 152-215 10-76 (91)
239 3kuz_A Plexin-C1; structural g 94.0 0.16 5.6E-06 40.7 7.2 61 315-375 39-125 (126)
240 1s3s_G P47 protein; AAA ATPase 93.5 0.17 5.7E-06 41.4 6.6 67 152-218 52-122 (127)
241 1ryj_A Unknown; beta/alpha pro 93.5 0.6 2E-05 33.6 8.9 67 380-456 4-70 (70)
242 2juo_A GA-binding protein alph 93.2 0.42 1.5E-05 35.2 7.6 58 241-298 5-62 (89)
243 3h6n_A Plexin-D1; structural g 92.7 0.94 3.2E-05 36.5 9.6 63 389-451 15-103 (127)
244 2r2o_A Plexin-B1; effector dom 92.5 0.63 2.2E-05 38.1 8.6 63 391-453 41-129 (138)
245 4e74_A Plexin-A4; RBD, structu 92.5 0.54 1.8E-05 37.5 8.0 64 390-453 26-115 (117)
246 1ryj_A Unknown; beta/alpha pro 92.1 1.3 4.3E-05 31.8 9.1 67 152-228 4-70 (70)
247 2l32_A Small archaeal modifier 91.5 0.43 1.5E-05 34.9 6.0 60 381-450 1-60 (74)
248 2l32_A Small archaeal modifier 90.9 0.44 1.5E-05 34.8 5.5 66 153-228 1-66 (74)
249 1oey_A P67-PHOX, neutrophil cy 90.7 0.67 2.3E-05 34.5 6.3 48 378-427 3-50 (83)
250 2juo_A GA-binding protein alph 90.4 1.8 6.3E-05 31.9 8.2 59 166-224 6-64 (89)
251 3jyu_A Ubiquitin carboxyl-term 90.0 0.92 3.2E-05 41.1 8.1 63 165-227 154-223 (231)
252 4a3p_A Ubiquitin carboxyl-term 89.9 0.75 2.6E-05 41.2 7.3 63 164-226 141-210 (217)
253 1vjk_A Molybdopterin convertin 88.8 2.8 9.7E-05 32.1 9.0 73 379-456 8-98 (98)
254 3kuz_A Plexin-C1; structural g 88.6 2.9 9.9E-05 33.5 8.9 60 391-450 39-124 (126)
255 1oey_A P67-PHOX, neutrophil cy 88.0 1 3.6E-05 33.5 5.6 38 163-200 14-51 (83)
256 1vjk_A Molybdopterin convertin 87.9 2.9 0.0001 32.0 8.6 73 150-227 7-97 (98)
257 3hm6_X Plexin-B1; structural g 87.8 1.5 5.3E-05 44.8 8.6 65 315-379 274-364 (644)
258 3ig3_A Plxna3 protein; plexin 87.1 2 6.7E-05 44.0 8.8 66 314-379 246-337 (627)
259 1tyg_B YJBS; alpha beta barrel 86.3 2.5 8.6E-05 31.8 7.0 68 151-228 19-87 (87)
260 3rpf_C Molybdopterin convertin 85.8 2.3 8E-05 30.7 6.6 58 166-228 15-74 (74)
261 3rpf_C Molybdopterin convertin 85.2 2.7 9.4E-05 30.3 6.7 71 381-456 1-74 (74)
262 1tyg_B YJBS; alpha beta barrel 83.5 2.5 8.6E-05 31.8 5.9 68 379-456 19-87 (87)
263 1ef1_A Moesin; membrane, FERM 83.0 5.3 0.00018 37.2 9.5 73 380-453 1-79 (294)
264 1h4r_A Merlin; FERM, neurofibr 82.8 6.3 0.00022 37.1 10.0 75 378-453 20-99 (314)
265 2kvr_A Ubiquitin carboxyl-term 80.6 1.2 4.2E-05 36.3 3.5 39 11-49 56-94 (130)
266 1ef1_A Moesin; membrane, FERM 80.6 6.4 0.00022 36.6 9.1 71 229-300 2-78 (294)
267 3dwg_C 9.5 kDa culture filtrat 79.5 9.7 0.00033 28.6 8.2 61 166-228 20-93 (93)
268 3ig3_A Plxna3 protein; plexin 79.3 8.6 0.0003 39.3 9.8 64 390-453 246-335 (627)
269 1vd2_A Protein kinase C, IOTA 79.1 8 0.00027 29.1 7.3 47 231-277 7-55 (89)
270 1h4r_A Merlin; FERM, neurofibr 78.5 9.5 0.00032 35.9 9.6 71 229-300 23-98 (314)
271 2kvr_A Ubiquitin carboxyl-term 78.3 1.8 6.2E-05 35.3 3.8 34 393-426 58-91 (130)
272 3po0_A Small archaeal modifier 78.0 8.2 0.00028 28.7 7.3 61 163-228 18-89 (89)
273 1vd2_A Protein kinase C, IOTA 78.0 9 0.00031 28.8 7.3 45 156-200 8-54 (89)
274 2kl0_A Putative thiamin biosyn 77.4 2.5 8.4E-05 30.6 3.9 62 388-457 5-66 (73)
275 3hm6_X Plexin-B1; structural g 76.0 10 0.00035 38.9 9.2 62 391-452 274-361 (644)
276 1f0z_A THis protein; ubiquitin 74.9 4.4 0.00015 28.5 4.7 61 161-228 6-66 (66)
277 3dwg_C 9.5 kDa culture filtrat 74.6 16 0.00055 27.3 8.2 74 381-456 1-93 (93)
278 2i1j_A Moesin; FERM, coiled-co 74.5 13 0.00043 38.4 9.8 75 378-453 2-82 (575)
279 1f0z_A THis protein; ubiquitin 74.2 4.4 0.00015 28.5 4.5 62 388-456 5-66 (66)
280 1wgk_A Riken cDNA 2900073H19 p 73.5 15 0.00051 29.0 7.9 77 379-457 10-109 (114)
281 2i1j_A Moesin; FERM, coiled-co 73.2 13 0.00043 38.4 9.4 71 229-300 5-81 (575)
282 2kmc_A Fermitin family homolog 73.1 29 0.00098 26.5 8.9 71 381-451 20-98 (102)
283 2k5p_A THis protein, thiamine- 73.0 3 0.0001 30.6 3.5 63 388-457 5-70 (78)
284 3po0_A Small archaeal modifier 72.5 15 0.0005 27.3 7.5 61 391-456 18-89 (89)
285 2cu3_A Unknown function protei 72.5 12 0.00041 25.9 6.5 61 160-228 4-64 (64)
286 2cu3_A Unknown function protei 72.4 6 0.00021 27.5 4.8 61 388-456 4-64 (64)
287 1fm0_D Molybdopterin convertin 72.1 8.1 0.00028 28.1 5.8 59 164-228 18-81 (81)
288 1fm0_D Molybdopterin convertin 71.8 7.7 0.00026 28.2 5.6 59 392-456 18-81 (81)
289 2q5w_D Molybdopterin convertin 71.7 8.6 0.00029 27.6 5.8 60 163-228 16-77 (77)
290 2kl0_A Putative thiamin biosyn 68.5 9.1 0.00031 27.5 5.1 60 161-228 6-65 (73)
291 2k9x_A Tburm1, uncharacterized 68.1 2.3 8E-05 33.5 2.0 76 379-456 3-102 (110)
292 3qij_A Protein 4.1; cytoskelet 66.2 20 0.00068 33.4 8.5 74 378-451 15-94 (296)
293 2q5w_D Molybdopterin convertin 65.5 8.5 0.00029 27.7 4.6 59 392-456 17-77 (77)
294 2kmm_A Guanosine-3',5'-BIS(dip 65.0 15 0.00052 25.9 5.9 62 381-451 1-62 (73)
295 2k5p_A THis protein, thiamine- 64.7 6.4 0.00022 28.8 3.7 63 161-228 6-69 (78)
296 1y8x_B Ubiquitin-activating en 64.6 17 0.00059 27.8 6.3 58 393-450 7-82 (98)
297 2kmc_A Fermitin family homolog 63.5 20 0.00069 27.3 6.2 70 2-71 21-98 (102)
298 2qjl_A URM1, ubiquitin-related 63.2 46 0.0016 25.1 9.3 63 163-228 20-99 (99)
299 1wgk_A Riken cDNA 2900073H19 p 61.2 32 0.0011 27.0 7.5 74 153-228 12-108 (114)
300 4eut_A Serine/threonine-protei 60.7 26 0.00089 33.7 8.5 42 8-49 319-360 (396)
301 3qij_A Protein 4.1; cytoskelet 60.6 21 0.00071 33.3 7.5 70 228-297 17-92 (296)
302 3ge3_C Toluene-4-monooxygenase 58.1 44 0.0015 24.5 7.0 58 394-451 18-82 (84)
303 2g1e_A Hypothetical protein TA 57.2 32 0.0011 25.2 6.7 61 167-228 19-90 (90)
304 1rws_A Hypothetical protein PF 56.9 3.5 0.00012 30.0 1.1 53 166-227 24-76 (77)
305 2k9x_A Tburm1, uncharacterized 55.8 8 0.00027 30.4 3.1 66 162-229 20-103 (110)
306 1ip9_A BEM1 protein; ubiquitin 54.7 48 0.0016 24.5 6.8 37 75-112 11-47 (85)
307 2inc_C TOUB protein; DIIRON, 4 53.7 63 0.0022 23.7 7.8 58 394-451 16-81 (83)
308 1wgr_A Growth factor receptor- 53.1 30 0.001 26.6 5.8 61 379-439 8-75 (100)
309 2l52_A Methanosarcina acetivor 53.0 48 0.0016 25.1 7.2 73 381-456 4-99 (99)
310 4eut_A Serine/threonine-protei 52.7 43 0.0015 32.1 8.6 50 390-439 321-372 (396)
311 2g1e_A Hypothetical protein TA 52.2 42 0.0014 24.6 6.6 62 394-456 18-90 (90)
312 3onh_A Ubiquitin-activating en 51.8 30 0.001 27.7 5.8 57 394-450 9-77 (127)
313 4eby_A Chitin elicitor recepto 51.5 32 0.0011 30.3 6.7 146 165-332 10-159 (212)
314 1wgy_A RAP guanine nucleotide 51.1 82 0.0028 24.3 8.2 69 156-224 13-86 (104)
315 1q1o_A Cell division control p 50.5 28 0.00096 26.6 5.2 40 74-113 3-49 (98)
316 1wgr_A Growth factor receptor- 49.7 37 0.0012 26.1 5.8 41 74-114 7-47 (100)
317 1y8x_B Ubiquitin-activating en 49.5 32 0.0011 26.3 5.4 59 164-222 6-82 (98)
318 1wgy_A RAP guanine nucleotide 49.3 46 0.0016 25.7 6.3 69 79-147 12-85 (104)
319 1q1o_A Cell division control p 47.6 24 0.00081 27.0 4.4 38 380-417 5-49 (98)
320 2qjl_A URM1, ubiquitin-related 46.7 90 0.0031 23.4 9.0 63 391-456 20-99 (99)
321 3hvz_A Uncharacterized protein 45.3 41 0.0014 24.4 5.3 61 382-451 7-67 (78)
322 1j0g_A Hypothetical protein 18 45.1 58 0.002 23.7 5.8 64 165-228 26-90 (92)
323 3onh_A Ubiquitin-activating en 44.2 59 0.002 26.0 6.4 51 172-223 19-78 (127)
324 1ip9_A BEM1 protein; ubiquitin 43.2 83 0.0028 23.2 6.5 47 380-428 12-58 (85)
325 1rws_A Hypothetical protein PF 43.2 5.5 0.00019 28.9 0.2 53 394-455 24-76 (77)
326 1c1y_B Proto-onkogene serine/t 43.1 67 0.0023 23.3 5.9 42 383-424 4-45 (77)
327 2l52_A Methanosarcina acetivor 42.3 90 0.0031 23.5 7.2 56 172-228 27-99 (99)
328 2zjd_A Microtubule-associated 42.1 77 0.0026 25.5 6.9 76 73-148 32-119 (130)
329 3qa8_A MGC80376 protein; kinas 41.1 30 0.001 36.3 5.6 53 236-288 319-372 (676)
330 1wxm_A A-RAF proto-oncogene se 40.9 70 0.0024 23.7 5.9 43 382-424 9-51 (86)
331 2c7h_A RBBP6, retinoblastoma-b 40.0 89 0.003 23.2 6.4 45 382-426 8-55 (86)
332 3qa8_A MGC80376 protein; kinas 39.2 33 0.0011 36.0 5.5 51 389-439 320-371 (676)
333 1v8c_A MOAD related protein; r 38.0 44 0.0015 28.2 5.1 63 394-458 17-89 (168)
334 2v1y_A Phosphatidylinositol-4, 37.9 62 0.0021 25.2 5.5 35 75-109 18-52 (108)
335 2l05_A Serine/threonine-protei 35.6 99 0.0034 23.3 6.0 45 380-424 17-61 (95)
336 2r2q_A Gamma-aminobutyric acid 34.9 68 0.0023 24.9 5.4 73 74-146 25-107 (110)
337 2kmm_A Guanosine-3',5'-BIS(dip 34.3 47 0.0016 23.2 4.1 30 1-32 1-30 (73)
338 3au4_A Myosin-X; protein-prote 33.5 95 0.0033 31.5 7.9 59 380-438 216-280 (555)
339 3r8s_T 50S ribosomal protein L 33.2 97 0.0033 23.3 5.8 42 390-431 27-69 (93)
340 2zjd_A Microtubule-associated 31.4 96 0.0033 24.9 5.9 59 394-452 56-119 (130)
341 1j0g_A Hypothetical protein 18 31.4 1.5E+02 0.0051 21.5 7.4 65 393-457 26-91 (92)
342 2inc_C TOUB protein; DIIRON, 4 31.0 1.6E+02 0.0053 21.6 8.1 60 165-224 15-82 (83)
343 2lgx_A Fermitin family homolog 30.6 19 0.00065 27.9 1.4 69 2-71 28-101 (112)
344 3m95_A Autophagy related prote 30.2 91 0.0031 24.9 5.5 76 73-148 33-118 (125)
345 2lgx_A Fermitin family homolog 29.5 31 0.0011 26.7 2.4 69 381-450 27-100 (112)
346 3rui_B Autophagy-related prote 29.1 1.6E+02 0.0053 23.2 6.6 75 74-148 28-112 (118)
347 3hk0_A Growth factor receptor- 29.0 1.2E+02 0.0041 27.4 6.8 59 381-439 9-74 (256)
348 3au4_A Myosin-X; protein-prote 29.0 97 0.0033 31.4 7.0 45 229-273 217-263 (555)
349 1c1y_B Proto-onkogene serine/t 28.5 1.6E+02 0.0053 21.3 5.9 42 231-272 4-45 (77)
350 4gdk_A Ubiquitin-like protein 28.1 1.3E+02 0.0046 22.4 5.8 59 394-452 23-85 (91)
351 3ge3_C Toluene-4-monooxygenase 27.9 1.8E+02 0.0061 21.3 6.9 59 165-223 17-82 (84)
352 1pqs_A Cell division control p 27.7 36 0.0012 24.7 2.5 26 316-341 3-28 (77)
353 2hj1_A Hypothetical protein; s 26.8 1.1E+02 0.0038 23.1 5.2 55 391-450 26-83 (97)
354 3pvl_A Myosin VIIA isoform 1; 26.7 1.3E+02 0.0045 31.3 7.6 47 379-425 262-309 (655)
355 3h9d_A ATG8, microtubule-assoc 25.9 1.3E+02 0.0044 23.8 5.6 75 74-148 29-113 (119)
356 2c7h_A RBBP6, retinoblastoma-b 25.7 1.1E+02 0.0038 22.6 4.8 32 242-273 21-53 (86)
357 3ny5_A Serine/threonine-protei 24.9 1.8E+02 0.0063 21.9 5.9 43 382-424 15-57 (96)
358 1wxm_A A-RAF proto-oncogene se 24.9 1.6E+02 0.0053 21.8 5.4 44 230-273 9-52 (86)
359 1rrb_A RAF-1 RBD, RAF proto-on 24.7 1.9E+02 0.0066 22.2 6.1 43 382-424 20-62 (107)
360 3rui_B Autophagy-related prote 24.2 1.7E+02 0.0058 23.0 6.0 59 394-452 50-112 (118)
361 3h9d_A ATG8, microtubule-assoc 23.8 1.3E+02 0.0045 23.7 5.3 59 394-452 51-113 (119)
362 1eo6_A GATE-16, golgi-associat 23.7 2.6E+02 0.0089 21.8 7.8 75 74-148 26-110 (117)
363 3tve_T 50S ribosomal protein L 23.5 1.4E+02 0.0048 22.3 5.2 41 390-430 21-62 (92)
364 2dhz_A RAP guanine nucleotide 23.2 2.3E+02 0.0078 22.4 6.5 49 77-125 10-67 (120)
365 1pqs_A Cell division control p 23.1 64 0.0022 23.4 3.1 27 11-37 2-28 (77)
366 2k5l_A FEOA; structure, NESG, 23.0 85 0.0029 22.6 3.8 37 206-243 26-62 (81)
367 2l05_A Serine/threonine-protei 22.3 1.9E+02 0.0064 21.8 5.5 43 230-272 19-61 (95)
368 3ddc_B RAS association domain- 22.2 2.3E+02 0.0079 23.6 6.6 33 85-117 85-117 (163)
369 2j58_A WZA, outer membrane lip 21.8 5.1E+02 0.017 24.4 16.0 174 247-449 117-322 (359)
370 2lte_A Specialized acyl carrie 27.0 20 0.00067 27.6 0.0 72 174-261 27-98 (103)
371 3lxf_A Ferredoxin; iron, iron- 21.2 95 0.0032 23.6 4.0 32 2-37 2-33 (104)
372 2k4y_A FEOA-like protein; GFT 20.3 98 0.0033 22.6 3.7 36 207-243 30-65 (86)
373 2v1y_A Phosphatidylinositol-4, 20.2 1.9E+02 0.0066 22.3 5.4 65 378-442 17-95 (108)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.7e-35 Score=260.66 Aligned_cols=152 Identities=34% Similarity=0.508 Sum_probs=147.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEE-E-eceeccCCCCccccccccccccceeEe-ecCCe
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~-~-~g~~L~d~~tl~~y~i~~~sti~l~~~-~~~~~ 77 (458)
|+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred EEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEeecc
Q 012713 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (458)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (458)
+|+|++.+|+.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++++
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.1e-34 Score=255.34 Aligned_cols=153 Identities=34% Similarity=0.503 Sum_probs=147.3
Q ss_pred eeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEE-e-cCeecCCCCCcccccccCCCeEEEEEe-ecCce
Q 012713 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 381 (458)
Q Consensus 305 ~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~-~-~g~~L~~~~~l~~y~I~~~~~l~l~~~-~~~~~ 381 (458)
|+|+||+.+|++++++|.+++||+++|++|+...|+|+.+|+|. | .|+.|+|+.+|++|||.+++++|++.+ .+++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999999 59999
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+||.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999983
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=7.9e-35 Score=259.51 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCeEEE
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++++..++|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEeecc
Q 012713 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (458)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (458)
|++.+|+.++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||+++++++
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987653
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=8.3e-34 Score=252.91 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=147.0
Q ss_pred cCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeEEEEEeecCce
Q 012713 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381 (458)
Q Consensus 302 ~~~~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l~l~~~~~~~~ 381 (458)
...|+|+|++++|++++++|.+++||.+||++|+...|+|++.|+|.|+|+.|+|+.+|++|||.++++|+++.+.++.|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=7.6e-33 Score=241.88 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCeEEE
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.+..++|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEeecc
Q 012713 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (458)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (458)
|++.+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++||++.+++++
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987653
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=3.5e-32 Score=237.67 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.4
Q ss_pred eeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeEEEEEeecCceeEE
Q 012713 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (458)
Q Consensus 305 ~~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~ 384 (458)
|+|+|++.+|++++++|.+++||+++|++|+...|+|++.|+|.|.|+.|+|+.+|++|||.+++++|++.+.++.|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 385 vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.5e-19 Score=139.77 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.3
Q ss_pred EEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 373 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 373 l~~~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|+...++.|+|+||++.|+++.++|+|++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 6777889999999999999999999999999999999999999999999999999999999999999999999999853
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=4.9e-20 Score=142.50 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccccccccccee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~ 70 (458)
|+|||++++|+++++++.|+|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|++++++||.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=134.59 Aligned_cols=78 Identities=35% Similarity=0.561 Sum_probs=75.1
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
+++|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999876
No 10
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.78 E-value=5.7e-19 Score=138.75 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=72.2
Q ss_pred cccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCC
Q 012713 364 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443 (458)
Q Consensus 364 ~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~ 443 (458)
|+.+++++++..+.+..|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 466788999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEE
Q 012713 444 ESTLHLVLR 452 (458)
Q Consensus 444 ~~~i~~~~~ 452 (458)
|++||++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999875
No 11
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.2e-20 Score=150.28 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=98.6
Q ss_pred ecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCCe
Q 012713 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (458)
Q Consensus 150 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~ 229 (458)
.+.++|+|+..+|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|..++++|.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEE---ccCCceEEEEeeccchHHH
Q 012713 230 QIFVK---TLTGKTITLEVESSDTIDN 253 (458)
Q Consensus 230 ~i~v~---~~~g~~i~~~v~~~dtV~~ 253 (458)
+++++ +..|++++++|++++||.+
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99988 5679999999999999864
No 12
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=7.7e-19 Score=135.08 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998754
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=1.4e-18 Score=136.39 Aligned_cols=77 Identities=56% Similarity=0.936 Sum_probs=73.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|.+||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999984
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.76 E-value=2.2e-18 Score=132.50 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.7
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++||++++.+||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=9.7e-19 Score=135.91 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.7
Q ss_pred CeEEEEcCCCcEEEEEec--CCccHHHHHHHh-hcccCCCCCceEEEEeceeccCCCCcccccc-ccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~--~~dtv~~~K~~i-~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i-~~~sti~l~~~~ 73 (458)
|+|||++++|++++++|+ ++|||.++|++| ++++|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999999866 999999999999 9999999999999999999999999999999 799999998764
No 16
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=1.6e-18 Score=135.99 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=73.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCe
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~ 77 (458)
|+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988875
No 17
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=8e-19 Score=138.71 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccccccccccee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~ 70 (458)
|+|||+++.|++++++|.++|||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|+|.+++++||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 18
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.4e-19 Score=147.49 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=97.8
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEeecce
Q 012713 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (458)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~m 153 (458)
.+..+|+|++++|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+.++++++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEE---eccCcEEEeeccCCCcHHH
Q 012713 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (458)
Q Consensus 154 ~i~v~---~~~g~~~~~~v~~~~tV~~ 177 (458)
.++++ ...|+++++++.+++||.+
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99988 5578999999999988863
No 19
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=3.9e-18 Score=133.95 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=76.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
..+|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999998
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=4.3e-18 Score=136.01 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=76.8
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+..|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|.|++||++|+|++|++||++++.+||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.2e-18 Score=135.90 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=75.7
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
...|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.+||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4469999999999999999999999999999999999999999999999999999999999999999999999999998
No 22
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=2.2e-18 Score=133.72 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEecee-ccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~-L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|||++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+. |+|+++|++|+|.+++++++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998753
No 23
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=9.6e-18 Score=127.80 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.8
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 24
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=132.73 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.8
Q ss_pred cccccccceeEeecCCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccc
Q 012713 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140 (458)
Q Consensus 61 i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~ 140 (458)
+.+++++++..+.+..|+|+||+.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 45678899998888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred cceeEEEE
Q 012713 141 STLHLVLR 148 (458)
Q Consensus 141 s~i~l~~~ 148 (458)
++|||+.|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999864
No 25
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.1e-17 Score=131.13 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=77.9
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+..|+|+|++.+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+++|++|+|++|++||++++.+||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 012713 458 F 458 (458)
Q Consensus 458 ~ 458 (458)
.
T Consensus 85 ~ 85 (87)
T 1wh3_A 85 S 85 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 26
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.73 E-value=5.2e-18 Score=136.03 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=75.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCeEEE
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (458)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+..++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEE
Q 012713 81 VKTLTGKTITL 91 (458)
Q Consensus 81 vk~~~g~~~~l 91 (458)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99988765443
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.73 E-value=1.3e-17 Score=131.54 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=74.1
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+..|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|++||++++.+++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 89999999997765
No 28
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=1.8e-17 Score=126.22 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.5
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 29
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1e-17 Score=130.66 Aligned_cols=79 Identities=77% Similarity=1.115 Sum_probs=73.1
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
..|+|+|++.+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+++|++|+|+++++||+++|.+||.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999998884
No 30
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.73 E-value=4e-18 Score=137.78 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=71.8
Q ss_pred CeEEEEcCCCc-EEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccccc-------ccccceeEe
Q 012713 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~-------~sti~l~~~ 72 (458)
|.||++...++ |++++++++|||.+||.+|+.++|+|+++|+|+|+|++|+|++||++|+|.+ ++++||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999998887 8999999999999999999999999999999999999999999999999999 999999998
Q ss_pred ecC
Q 012713 73 LRG 75 (458)
Q Consensus 73 ~~~ 75 (458)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=131.80 Aligned_cols=79 Identities=35% Similarity=0.571 Sum_probs=72.4
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.+|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.+.+||.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999884
No 32
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.72 E-value=3.7e-18 Score=138.74 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=69.6
Q ss_pred CeEEEEcCCCc-EEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccc-------cccccceeEe
Q 012713 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~-------~~sti~l~~~ 72 (458)
|+|||+...|+ +++++|+++|||.+||++|++++|||+++|+|+|+|++|+|++||++|+|. ++|++||+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999987 699999999999999999999999999999999999999999999999999 7999999988
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=4.2e-18 Score=130.94 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|++|+++|+|.+++++|++++.+++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987653
No 34
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.8e-17 Score=129.34 Aligned_cols=80 Identities=36% Similarity=0.622 Sum_probs=76.3
Q ss_pred cCceeEEEEcCCC-cEEEE-EecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 378 RGGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 378 ~~~~~i~vk~~~g-~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
+..|+|+|++.+| +.+.+ +|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++||++++.+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 4579999999999 69999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 012713 456 GE 457 (458)
Q Consensus 456 g~ 457 (458)
|+
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 35
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.1e-17 Score=128.79 Aligned_cols=79 Identities=89% Similarity=1.199 Sum_probs=75.5
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.+|+|+|++.+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++||+++|.+||.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999884
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=2.1e-17 Score=130.95 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=76.1
Q ss_pred ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEEEEEecC
Q 012713 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
.+..|+|+||+.+| .+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+ .+|++|+|++|++|+++++.+|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 45679999999988 899999999999999999999999999999999999999999 9999999999999999999998
Q ss_pred CC
Q 012713 456 GE 457 (458)
Q Consensus 456 g~ 457 (458)
|.
T Consensus 91 g~ 92 (94)
T 2kan_A 91 RA 92 (94)
T ss_dssp SC
T ss_pred CC
Confidence 84
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.6e-17 Score=130.33 Aligned_cols=79 Identities=85% Similarity=1.243 Sum_probs=70.4
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
..|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++.+||.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999985
No 38
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=2.4e-17 Score=131.68 Aligned_cols=78 Identities=94% Similarity=1.271 Sum_probs=73.9
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.+||.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999884
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.72 E-value=2.1e-17 Score=131.30 Aligned_cols=78 Identities=19% Similarity=0.386 Sum_probs=71.2
Q ss_pred ecCceeEEEEcCCCcEEEE--EecCCCcHHHHHHHH-HhhcCCCCCceEEEEcCeecCCCCCccccCC-CCCCEEEEEEE
Q 012713 377 LRGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 452 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i--~v~~~~tV~~lK~~i-~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i-~~~~~i~~~~~ 452 (458)
.+..|+|+||+++|+.|.+ +|++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 3567999999999998777 566999999999999 8888999999999999999999999999999 99999999998
Q ss_pred ec
Q 012713 453 LR 454 (458)
Q Consensus 453 ~~ 454 (458)
++
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 40
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.71 E-value=2.8e-17 Score=129.86 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=73.8
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
+..|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999998864
No 41
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.71 E-value=7.3e-18 Score=134.66 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|++|+|++||++|+|.++++||++++++++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987764
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.71 E-value=3.7e-17 Score=133.84 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.2
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
..|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.+||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 359999999999999999999999999999999999999999999999999999999999999999999999999998
No 43
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=2.7e-17 Score=127.55 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=71.4
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCee-cCCCCCccccCCCCCCEEEEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~-L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
..|+|+|++.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+. |+|+.+|++|+|++|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 469999999999999999999999999999999999999999999999999 99999999999999999999875
No 44
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.71 E-value=5.2e-17 Score=126.63 Aligned_cols=79 Identities=28% Similarity=0.479 Sum_probs=72.0
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhh---cCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~---~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
+..|+|+|++.+|+.+.++|++++||.+||++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.+..
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 578999999999999999999999999999999998 78999999999999999999999999999999999998876
Q ss_pred CC
Q 012713 455 GG 456 (458)
Q Consensus 455 ~g 456 (458)
..
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 44
No 45
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.9e-17 Score=130.87 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=69.6
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
.|+|+||++.|+.+.++|+|++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|||..
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 399999999999999999999999999999999999999999999999999999999999999999999864
No 46
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=134.99 Aligned_cols=93 Identities=80% Similarity=1.042 Sum_probs=83.4
Q ss_pred cccCCCeEEEEEee--------cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCC
Q 012713 364 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 435 (458)
Q Consensus 364 ~I~~~~~l~l~~~~--------~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~t 435 (458)
++.+++++++.... ...|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t 90 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 90 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence 35566666666542 2469999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEEEecCC
Q 012713 436 LADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 436 l~~~~i~~~~~i~~~~~~~~g 456 (458)
|++|++++|++||+++|.+||
T Consensus 91 L~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 91 LSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTTCCTTCEEEEEECCCC-
T ss_pred HHHcCCCCCCEEEEEEeCCCC
Confidence 999999999999999999997
No 47
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=2.3e-17 Score=125.66 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|+++++++.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+.++.+++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887653
No 48
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.70 E-value=1.7e-17 Score=130.91 Aligned_cols=75 Identities=33% Similarity=0.573 Sum_probs=71.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+| +++++||+++.+.+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 89999999976543
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=130.33 Aligned_cols=78 Identities=37% Similarity=0.629 Sum_probs=72.6
Q ss_pred ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+..|+|+|++ |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|.+||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 35579999998 8999999999999999999999999999999999999999999999999999999999999999998
No 50
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=1.8e-17 Score=127.03 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEE-EEE-ecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~-~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++++|+++ +++ |.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999996 999 999999999999999999999999999999999999999999999999999998875
No 51
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.7e-17 Score=129.65 Aligned_cols=80 Identities=29% Similarity=0.484 Sum_probs=74.5
Q ss_pred cCceeEEEEcCCCc--EEEEEecCCCcHHHHHHHHHhhc--CCCCCceEEEEcCeecCCCCCcccc--CCCCCCEEEEEE
Q 012713 378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVL 451 (458)
Q Consensus 378 ~~~~~i~vk~~~g~--~~~i~v~~~~tV~~lK~~i~~~~--~~~~~~q~Li~~G~~L~d~~tl~~~--~i~~~~~i~~~~ 451 (458)
+..|+|+||+.+++ .+.++|++++||.+||++|++.. ++|+++|+|+|+|+.|+|+++|++| +|+++++||+++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 34699999999998 67777889999999999999998 9999999999999999999999999 999999999999
Q ss_pred EecCCC
Q 012713 452 RLRGGE 457 (458)
Q Consensus 452 ~~~~g~ 457 (458)
+.+||+
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 999884
No 52
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.70 E-value=1.7e-17 Score=130.34 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=73.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|+|+.+|.+|+|.+++++|++++++++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987764
No 53
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=130.57 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999877654
No 54
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.70 E-value=6.6e-17 Score=129.55 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.6
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCCeEEE
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 232 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~~i~ 232 (458)
|+|+|+..+|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++..+..+|.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCceEEE
Q 012713 233 VKTLTGKTITL 243 (458)
Q Consensus 233 v~~~~g~~i~~ 243 (458)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99887765444
No 55
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=3.2e-17 Score=134.79 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEE-EEEecCCccHHHHHHHh-----hcccCCCC--CceEEEEeceeccCCCCccccccccc------cc
Q 012713 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (458)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i-----~~~~gip~--~~q~l~~~g~~L~d~~tl~~y~i~~~------st 66 (458)
|+|+|++.+|+.+ +++++++|||.+||++| ++++|+|+ ++|+|+|+|++|+|++||++|+|+.+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 7899999999999 79999999999999999 77889997 79999999999999999999999988 78
Q ss_pred cceeEeecCC
Q 012713 67 LHLVLRLRGG 76 (458)
Q Consensus 67 i~l~~~~~~~ 76 (458)
+||+++++++
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 9999987754
No 56
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=2.7e-17 Score=128.99 Aligned_cols=76 Identities=87% Similarity=1.271 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887764
No 57
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.69 E-value=2.5e-17 Score=130.07 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998753
No 58
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.7e-17 Score=127.72 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.1
Q ss_pred eeEEEEcCCCcEEEEEec--CCCcHHHHHHHH-HhhcCCCCCceEEEEcCeecCCCCCccccCC-CCCCEEEEEEEe
Q 012713 381 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 453 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~--~~~tV~~lK~~i-~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i-~~~~~i~~~~~~ 453 (458)
|+|+||+++|++|+++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++.+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988866 999999999999 9999999999999999999999999999999 799999998864
No 59
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=9e-17 Score=123.09 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.2
Q ss_pred CceeEEEEcCCCcEE-EEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 379 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~-~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
+.|+|+|++.+|+.+ .++ |++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 369999999999985 999 999999999999999999999999999999999999999999999999999999875
No 60
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.2e-17 Score=131.30 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=73.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++++++++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 61
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.69 E-value=2.8e-17 Score=144.60 Aligned_cols=100 Identities=76% Similarity=1.034 Sum_probs=86.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCeEEE
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|.+|+|.+++++||+++++++.+-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred EEecC-Cc--EEEEEEcCCCCHH
Q 012713 81 VKTLT-GK--TITLEVESSDTID 100 (458)
Q Consensus 81 vk~~~-g~--~~~l~v~~~~tV~ 100 (458)
|+... |. .-.+.+.++.++.
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~ 103 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDME 103 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSS
T ss_pred ccccccCcccceeEEEecCCCCC
Confidence 77552 33 3456666665553
No 62
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=9.6e-17 Score=126.78 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=65.6
Q ss_pred EEEEcCC----CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 383 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 383 i~vk~~~----g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|.|+.++ ++.+.++|++++||.+||++|++++|+|+++|+|||+||.|+|++||++|+|++|++| ++++.+|.
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 4444555 7789999999999999999999999999999999999999999999999999999999 66776665
No 63
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=9.2e-17 Score=128.82 Aligned_cols=80 Identities=33% Similarity=0.413 Sum_probs=76.0
Q ss_pred ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+..|+|+|++.+|+ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++.++|
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 456799999999986 7999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C
Q 012713 457 E 457 (458)
Q Consensus 457 ~ 457 (458)
|
T Consensus 98 p 98 (100)
T 1yqb_A 98 A 98 (100)
T ss_dssp C
T ss_pred C
Confidence 6
No 64
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=5.5e-17 Score=132.36 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhc------ccCC--CCCceEEEEeceeccCCCCccccccccc--ccccee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~------~~gi--p~~~q~l~~~g~~L~d~~tl~~y~i~~~--sti~l~ 70 (458)
|+|+|+++.|++++++|++++||.+||++|++ ++|+ |+++|+|+|+|++|+|++||++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 6785 6999999999999999999999999755 689999
Q ss_pred EeecC
Q 012713 71 LRLRG 75 (458)
Q Consensus 71 ~~~~~ 75 (458)
+++..
T Consensus 97 lr~~~ 101 (116)
T 1wgh_A 97 ARETL 101 (116)
T ss_dssp ECSSC
T ss_pred ccCCC
Confidence 87653
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.5e-17 Score=133.68 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=68.3
Q ss_pred CCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCc
Q 012713 357 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436 (458)
Q Consensus 357 ~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl 436 (458)
..+.++|.| ++|.++..+.+..|+|+|++ +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 456788988 56666666666778999998 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEE
Q 012713 437 ADYNIQKESTLHLVLR 452 (458)
Q Consensus 437 ~~~~i~~~~~i~~~~~ 452 (458)
++|+|++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998765
No 66
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=4.2e-17 Score=127.14 Aligned_cols=76 Identities=80% Similarity=1.167 Sum_probs=72.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987754
No 67
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=4.3e-17 Score=129.22 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=72.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCC-CCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|||++++| +++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++++|+++++++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999988 999999999999999999999999999999999999999999 99999999999999999987765
No 68
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.68 E-value=4.7e-17 Score=129.21 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.3
Q ss_pred CeEEEEcCCCcEEEE--EecCCccHHHHHHHh-hcccCCCCCceEEEEeceeccCCCCcccccc-ccccccceeEee
Q 012713 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~--~v~~~dtv~~~K~~i-~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i-~~~sti~l~~~~ 73 (458)
|+|+|++++|++|++ +|.+++||.+||++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++++|+++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 799999999998887 555999999999999 9999999999999999999999999999999 999999998753
No 69
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.68 E-value=6.1e-17 Score=129.31 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=73.9
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCeEE
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i 79 (458)
|+|+|++++|++++++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|.+|+|.+++++|++++++++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998888654
No 70
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=2e-16 Score=125.91 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.6
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhh---cCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~---~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
|+|+||+.+|+.+.++|++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 789999999999999999999999999999999999987643
No 71
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=5.2e-17 Score=127.22 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988765
No 72
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.68 E-value=8.2e-17 Score=122.58 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|+++++++.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.++++++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887654
No 73
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.9e-17 Score=130.72 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=70.5
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987543
No 74
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.67 E-value=9.7e-17 Score=130.39 Aligned_cols=77 Identities=29% Similarity=0.449 Sum_probs=69.5
Q ss_pred eeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCC-------CCCEEEEEEE
Q 012713 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 452 (458)
Q Consensus 381 ~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~-------~~~~i~~~~~ 452 (458)
|.++++...++ ++.++|++++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++|||+ ++++||+.+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 44555555565 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCCC
Q 012713 453 LRGGEF 458 (458)
Q Consensus 453 ~~~g~~ 458 (458)
.||.|
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 88876
No 75
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.67 E-value=2.5e-17 Score=146.30 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=79.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCeEEE
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (458)
|+|||++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred EE
Q 012713 81 VK 82 (458)
Q Consensus 81 vk 82 (458)
||
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 75
No 76
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.49 E-value=4.3e-18 Score=129.85 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.8
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++++|++++++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988764
No 77
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6e-17 Score=131.43 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.++++++|+++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998643
No 78
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=126.00 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=72.8
Q ss_pred CeEEEEcCCC-cEEEE-EecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++| +++++ +|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 7999999999 79999 5999999999999999999999999999999999999999999999999999999987765
No 79
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=9.4e-17 Score=125.10 Aligned_cols=76 Identities=92% Similarity=1.254 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|.+|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 80
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2.2e-17 Score=132.26 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCC---------------CceEEEEeceecc-CCCCccccccccc
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQKE 64 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~---------------~~q~l~~~g~~L~-d~~tl~~y~i~~~ 64 (458)
|+|+|++++|++++++|++++||.+||++|++++|+|+ ++|+|+|+|+.|. |++||.+|+|.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999988 4679999999996 6699999999999
Q ss_pred cccceeEeecCC
Q 012713 65 STLHLVLRLRGG 76 (458)
Q Consensus 65 sti~l~~~~~~~ 76 (458)
+++||++++++.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999987654
No 81
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.67 E-value=2.2e-16 Score=138.84 Aligned_cols=77 Identities=96% Similarity=1.312 Sum_probs=74.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.+||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999984
No 82
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=121.95 Aligned_cols=76 Identities=39% Similarity=0.693 Sum_probs=72.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
+..|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999998774
No 83
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=7.4e-17 Score=129.18 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=72.2
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---------------CceEEEEcCeecC-CCCCccccCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNI 441 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~---------------~~q~Li~~G~~L~-d~~tl~~~~i 441 (458)
...|+|+|++++|++|.++|++++||.+||++|+++.++|+ .+|+|+|+|+.|. |++||++|+|
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 34699999999999999999999999999999999999877 3679999999996 6799999999
Q ss_pred CCCCEEEEEEEecCC
Q 012713 442 QKESTLHLVLRLRGG 456 (458)
Q Consensus 442 ~~~~~i~~~~~~~~g 456 (458)
++|++||++.+.+|.
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999987764
No 84
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=8.1e-17 Score=127.52 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.3
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++ |++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999987764
No 85
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=2.4e-16 Score=129.66 Aligned_cols=86 Identities=27% Similarity=0.441 Sum_probs=74.5
Q ss_pred EEEEeecCceeEEEEcCCCcEE-EEEecCCCcHHHHHHHHH-----hhcCCCC--CceEEEEcCeecCCCCCccccCCCC
Q 012713 372 HLVLRLRGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQK 443 (458)
Q Consensus 372 ~l~~~~~~~~~i~vk~~~g~~~-~i~v~~~~tV~~lK~~i~-----~~~~~~~--~~q~Li~~G~~L~d~~tl~~~~i~~ 443 (458)
||-....+.|+|+||+.+|+.+ .++++|++||.+||++|+ ++.|+|+ ++|||||+||.|+|+.||++|+|++
T Consensus 8 ~~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~ 87 (126)
T 1se9_A 8 HLEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPV 87 (126)
T ss_dssp --CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCT
T ss_pred hhhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCc
Confidence 3444456789999999999988 699999999999999994 5567876 8999999999999999999999999
Q ss_pred C------CEEEEEEEecCCC
Q 012713 444 E------STLHLVLRLRGGE 457 (458)
Q Consensus 444 ~------~~i~~~~~~~~g~ 457 (458)
| +++|++++.++|.
T Consensus 88 ~~~~~~v~tmhlVlrl~g~~ 107 (126)
T 1se9_A 88 SNLAGAVTTMHVIIQAPVTE 107 (126)
T ss_dssp TSCTTCCEEEEEEECCCSSC
T ss_pred CCccCCcEEEEEEeccCCcc
Confidence 8 6799999988763
No 86
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.1e-16 Score=125.74 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcc---cCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~---~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|+|+|++++|++++++|.+++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999998 89999999999999999999999999999999999988543
No 87
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.66 E-value=1.4e-16 Score=130.42 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++++++++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987763
No 88
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=1.6e-16 Score=130.14 Aligned_cols=81 Identities=32% Similarity=0.446 Sum_probs=77.3
Q ss_pred ecCceeEEEEcC---CCcEEEEEecC-CCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 377 LRGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 377 ~~~~~~i~vk~~---~g~~~~i~v~~-~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
.+.+|+|+|+++ +|+.+.++|++ ++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 467899999999 89999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 012713 453 LRGGE 457 (458)
Q Consensus 453 ~~~g~ 457 (458)
.+||.
T Consensus 104 ~~GGk 108 (111)
T 1we6_A 104 ERSGP 108 (111)
T ss_dssp SCCSS
T ss_pred cCCCC
Confidence 99984
No 89
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=124.65 Aligned_cols=81 Identities=30% Similarity=0.363 Sum_probs=75.2
Q ss_pred eecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 376 ~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
..+..|+|+|++. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+.++
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 4466799999999 899999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 012713 456 GE 457 (458)
Q Consensus 456 g~ 457 (458)
.|
T Consensus 100 ~~ 101 (101)
T 2klc_A 100 RP 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 90
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=1.3e-16 Score=127.40 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=75.3
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+..|+|+|++. |+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+++|++|+|++|++||++++.++|+
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 35699999999 99999999999999999999999999999999999999999999999999999999999999998874
No 91
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.65 E-value=2.3e-16 Score=127.46 Aligned_cols=77 Identities=30% Similarity=0.458 Sum_probs=69.9
Q ss_pred eeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCC-------CCEEEEEEE
Q 012713 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 452 (458)
Q Consensus 381 ~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~-------~~~i~~~~~ 452 (458)
|.++++...++ ++.++|++++||.+||++|+.+.|+|+++|||||+|+.|+|++||++|||++ +++||+++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 45666666666 6889999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 012713 453 LRGGEF 458 (458)
Q Consensus 453 ~~~g~~ 458 (458)
. +|.|
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 6766
No 92
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.9e-16 Score=127.49 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=75.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+..|+|+||+.+|+.+.++|++++||.+||++|++..|+++++|+|+|+|+.|+|+++|++|+|++|++||++.+.+.++
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999877653
No 93
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.65 E-value=2e-16 Score=123.30 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcc---cCCCCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~---~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++++|++++++|.+++||.+||++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 799999999999999999999999999999997 8999999999999999999999999999999999998754
No 94
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=131.65 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=68.9
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhc------ccCCC--CCceEEEEeceeccCCCCcccccccccc--cccee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~------~~gip--~~~q~l~~~g~~L~d~~tl~~y~i~~~s--ti~l~ 70 (458)
|+|+|++++|++++++|++++||.+||++|++ ++|+| +++|+|+|+|+.|+|++||++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 78985 8999999999999999999999999665 78998
Q ss_pred EeecC
Q 012713 71 LRLRG 75 (458)
Q Consensus 71 ~~~~~ 75 (458)
+++..
T Consensus 98 ~r~~~ 102 (125)
T 2gow_A 98 ARETL 102 (125)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 87654
No 95
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=121.43 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 96
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.46 E-value=9.9e-18 Score=127.81 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.1
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999886
No 97
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.65 E-value=3.6e-16 Score=138.86 Aligned_cols=82 Identities=89% Similarity=1.187 Sum_probs=77.8
Q ss_pred eecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 376 ~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
.-.-.|+|+||+++|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.+|
T Consensus 101 ~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 101 TDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence 33446999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 012713 456 GE 457 (458)
Q Consensus 456 g~ 457 (458)
|.
T Consensus 181 G~ 182 (189)
T 3q3f_A 181 GG 182 (189)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 98
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=7.4e-16 Score=125.68 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=70.5
Q ss_pred ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHh------hcCC--CCCceEEEEcCeecCCCCCccccCCCCC--CE
Q 012713 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--ST 446 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~------~~~~--~~~~q~Li~~G~~L~d~~tl~~~~i~~~--~~ 446 (458)
.++.|.|+||+.+|++++++|++++||.+||++|++ +.++ ++++|||||+|+.|+|+.||++|+|+.+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 356699999999999999999999999999999999 5564 6999999999999999999999999876 56
Q ss_pred EEEEEEecCC
Q 012713 447 LHLVLRLRGG 456 (458)
Q Consensus 447 i~~~~~~~~g 456 (458)
||+++|..++
T Consensus 93 lhLvlr~~~~ 102 (116)
T 1wgh_A 93 MHLVARETLP 102 (116)
T ss_dssp EEEEECSSCS
T ss_pred EEEEccCCCC
Confidence 8888775543
No 99
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=2.2e-16 Score=125.18 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=71.5
Q ss_pred CeEEEEcCCCc--EEEEEecCCccHHHHHHHhhccc--CCCCCceEEEEeceeccCCCCcccc--ccccccccceeEeec
Q 012713 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~~K~~i~~~~--gip~~~q~l~~~g~~L~d~~tl~~y--~i~~~sti~l~~~~~ 74 (458)
|+|+|++++|+ ++++++.+++||.+||++|+++. |+|+++|+|+|+|+.|+|+.+|++| +|.+++++||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999998 78888889999999999999998 9999999999999999999999999 999999999998876
Q ss_pred CC
Q 012713 75 GG 76 (458)
Q Consensus 75 ~~ 76 (458)
++
T Consensus 88 gg 89 (93)
T 1wgd_A 88 SG 89 (93)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 100
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=2.3e-16 Score=124.61 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=61.1
Q ss_pred CcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 10 g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|++++++|++++||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.+++++ +++++++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 7899999999999999999999999999999999999999999999999999999999 5555543
No 101
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.6e-16 Score=125.44 Aligned_cols=79 Identities=33% Similarity=0.427 Sum_probs=74.5
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+..|+|+|++.+|+ +.++|++++||.+||++|++..|+++++|+|+|+|+.|+|+++|++|+|++|++||++++.++|+
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 34599999999886 79999999999999999999999999999999999999999999999999999999999988874
No 102
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.64 E-value=2.8e-16 Score=125.13 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=68.7
Q ss_pred CeEEEEcCCC--cEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccc-ccccccceeEee
Q 012713 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i-~~~sti~l~~~~ 73 (458)
|+|+|++..| .+++++|.|++||.+||++|++++|||+++||++|+|+.|+|++||.+|+| ++++++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 799999999999999999999999999999999999999999999999999 699999998743
No 103
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=4.4e-16 Score=125.49 Aligned_cols=79 Identities=20% Similarity=0.380 Sum_probs=73.9
Q ss_pred CceeEEEEcCCC----cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEEEEEe
Q 012713 379 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 379 ~~~~i~vk~~~g----~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tl~~~~i~~~~~i~~~~~~ 453 (458)
..|+|+|++.++ +.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+ ++|++|+|++|++||++.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 459999999755 7899999999999999999999999999999999999999988 69999999999999999999
Q ss_pred cCCC
Q 012713 454 RGGE 457 (458)
Q Consensus 454 ~~g~ 457 (458)
++|+
T Consensus 86 ~gg~ 89 (102)
T 1v5o_A 86 NVGL 89 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9885
No 104
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=8.9e-16 Score=128.00 Aligned_cols=78 Identities=29% Similarity=0.363 Sum_probs=70.9
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
..|+|+|++. |+.+.++|++++||.+||++|++..|+++++|+|+|+|+.|+|+++|++|+|++|++|+++.+.++|+
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 4699999999 99999999999999999999999999999999999999999999999999999999999999988873
No 105
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.63 E-value=1.1e-15 Score=116.55 Aligned_cols=72 Identities=33% Similarity=0.568 Sum_probs=68.8
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
+|+|+|++ +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.+
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 38999999 9999999999999999999999999999999999999999999999999999999999998764
No 106
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=8.6e-16 Score=127.14 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=71.1
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHh------hcCC--CCCceEEEEcCeecCCCCCccccCCCCCC--EE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TL 447 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~------~~~~--~~~~q~Li~~G~~L~d~~tl~~~~i~~~~--~i 447 (458)
+..|.|+||+++|++++++|+|++||.+||++|++ +.|+ ++++|+|||+||.|+|++||++|+|++|+ ++
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34589999999999999999999999999999999 6677 58999999999999999999999999777 68
Q ss_pred EEEEEecCC
Q 012713 448 HLVLRLRGG 456 (458)
Q Consensus 448 ~~~~~~~~g 456 (458)
|+++|.+++
T Consensus 95 hlv~r~~~~ 103 (125)
T 2gow_A 95 HLVARETLP 103 (125)
T ss_dssp EEEECSCCS
T ss_pred EEEecCCCC
Confidence 888887654
No 107
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=3.9e-16 Score=126.76 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++||+++.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988654
No 108
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.62 E-value=5.8e-16 Score=118.18 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEe
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|+|+|++ +|+++++++.+++||.+||.+|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7899999 9999999999999999999999999999999999999999999999999999999999999765
No 109
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.62 E-value=1.2e-15 Score=125.69 Aligned_cols=80 Identities=29% Similarity=0.578 Sum_probs=73.3
Q ss_pred cCceeEEEEcC----------CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEE
Q 012713 378 RGGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447 (458)
Q Consensus 378 ~~~~~i~vk~~----------~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i 447 (458)
+.++.|.|+.+ +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 45566677665 47889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 012713 448 HLVLRLRGGE 457 (458)
Q Consensus 448 ~~~~~~~~g~ 457 (458)
|++++.+||.
T Consensus 103 ~lv~rl~GGk 112 (115)
T 1we7_A 103 HLALKERSGP 112 (115)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999999983
No 110
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.62 E-value=4e-17 Score=137.28 Aligned_cols=78 Identities=95% Similarity=1.292 Sum_probs=1.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
|+|+|++.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.+||.+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~ 78 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII 78 (128)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999963
No 111
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-16 Score=124.41 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=65.1
Q ss_pred CeEEEEcCCCc--EEEEEecCCccHHHHHHHhhcc-cCCC-CCceEEEEeceeccCCCCcccc--cccccccccee
Q 012713 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~~K~~i~~~-~gip-~~~q~l~~~g~~L~d~~tl~~y--~i~~~sti~l~ 70 (458)
|+|+|++++|+ +++++|++++||.+||++|+++ .|+| +++|+|+|+|+.|+|+++|++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 7899999999999999999985 6766 5999999999999999999999 99999999984
No 112
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.1e-16 Score=125.22 Aligned_cols=93 Identities=31% Similarity=0.519 Sum_probs=67.4
Q ss_pred CcchhhcccccccceeEEEEeecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccc
Q 012713 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (458)
Q Consensus 129 ~~tl~~y~i~~~s~i~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL 208 (458)
...+++|.|. ++.++..+....|.|+|+. +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 4678899885 5666666666667888886 889999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCEEEEEEE
Q 012713 209 ADYNIQKESTLHLVLR 224 (458)
Q Consensus 209 ~~~~i~~~s~i~l~~~ 224 (458)
++|||++|++|+|+.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998754
No 113
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=123.70 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=74.4
Q ss_pred cceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
..|+|+|+..+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 114
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=6e-17 Score=136.16 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++||++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887765
No 115
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=8.5e-16 Score=123.18 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++.+|+ ++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++.++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 116
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=121.38 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=65.3
Q ss_pred cCceeEEEEcCCCc--EEEEEecCCCcHHHHHHHHHhhc-CCC-CCceEEEEcCeecCCCCCcccc--CCCCCCEEEEE
Q 012713 378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 450 (458)
Q Consensus 378 ~~~~~i~vk~~~g~--~~~i~v~~~~tV~~lK~~i~~~~-~~~-~~~q~Li~~G~~L~d~~tl~~~--~i~~~~~i~~~ 450 (458)
+.+|+|+||+++|+ .+.++|++++||.+||++|+++. |.| +++|||||+|+.|+|+++|++| +|++|++||++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 45699999999998 67899999999999999999964 554 6999999999999999999999 99999999974
No 117
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=7.9e-16 Score=126.04 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=72.9
Q ss_pred CeEEEEcC---CCcEEEEEecC-CccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~---~g~~~~~~v~~-~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|+++ +|++++++|.+ ++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 89999999998 999999999999999999999999999999999999999999999999999987765
No 118
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=6.3e-16 Score=123.30 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=71.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|.+|+|.+++++|++++.+++
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999876653
No 119
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.59 E-value=7.8e-17 Score=138.48 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++++|++++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+|.+++++||++++.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988765
No 120
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.59 E-value=4.9e-15 Score=117.93 Aligned_cols=74 Identities=23% Similarity=0.232 Sum_probs=69.1
Q ss_pred ceeEEEEcCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC-CCCCEEEEEEEe
Q 012713 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 453 (458)
Q Consensus 380 ~~~i~vk~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i-~~~~~i~~~~~~ 453 (458)
.|+|+|++..+ ..++++|+|++||.+||++|++++|+|++.|||+|+|+.++|+.||++||| ++|+++|+++-.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 48999999875 689999999999999999999999999999999999999999999999999 699999998753
No 121
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.58 E-value=1.2e-16 Score=137.22 Aligned_cols=77 Identities=96% Similarity=1.312 Sum_probs=0.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
|+|+|++++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.+||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998883
No 122
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.7e-15 Score=117.71 Aligned_cols=74 Identities=16% Similarity=0.300 Sum_probs=69.1
Q ss_pred eeEEEE-cCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 381 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 381 ~~i~vk-~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
+.|.|+ .+.++.++++++++.||++||+.++++.++|++.|+|+|+||.|+|+.||++|||++|.+|||+++..
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 667776 66788999999999999999999999999999999999999999999999999999999999998753
No 123
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=2.6e-15 Score=125.16 Aligned_cols=75 Identities=31% Similarity=0.401 Sum_probs=69.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++. |++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.++++++|+.+..++
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999876654
No 124
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=120.21 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=70.1
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeec
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|+|+|++. |++++++|.+++||.+||.+|++..|+|++.|+|+|+|+.|+|+.+|.+|+|.++++++++.+.+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999 89999999999999999999999999999999999999999999999999999999999988654
No 125
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.57 E-value=1.7e-16 Score=139.70 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|||++++|++++|+|+++|||.+||++|++.+|||+++|+|+|+|++|+|+++|+ ++|+|||+++++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 99999999988776
No 126
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=6e-15 Score=117.33 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=69.8
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEEEEEecC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
..|+|+||+.+|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ ++|++|+|++|++||++.+.++
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 469999999999999999999999999999999987 8999999999999999 9999999999999999988654
No 127
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=2.8e-15 Score=120.72 Aligned_cols=76 Identities=20% Similarity=0.376 Sum_probs=70.3
Q ss_pred CeEEEEcCCC----cEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCC-CCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++.+| ++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ ++|.+|+|.+++++|+..+.++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899999754 7999999999999999999999999999999999999999987 6999999999999999887654
Q ss_pred C
Q 012713 76 G 76 (458)
Q Consensus 76 ~ 76 (458)
+
T Consensus 88 g 88 (102)
T 1v5o_A 88 G 88 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 128
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=4.5e-15 Score=120.52 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++.+|+ ++++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|+|+++|.+|+|.+++++|++.+..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 129
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=1.2e-14 Score=117.96 Aligned_cols=78 Identities=28% Similarity=0.406 Sum_probs=71.0
Q ss_pred CceeEEEEcCCC---cEEEEEe--------cC-CCcHHHHHHHHHhhc--CCCCCc-eEEEEcCeecCCCCCccccCCCC
Q 012713 379 GGMQIFVKTLTG---KTITLEV--------ES-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 443 (458)
Q Consensus 379 ~~~~i~vk~~~g---~~~~i~v--------~~-~~tV~~lK~~i~~~~--~~~~~~-q~Li~~G~~L~d~~tl~~~~i~~ 443 (458)
..|+|+||+.++ +.+.+++ ++ ++||.+||++|++.. |+|+++ |+|+|+|+.|+|+++|++|+|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458999999999 8899994 45 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEEecCC
Q 012713 444 ESTLHLVLRLRGG 456 (458)
Q Consensus 444 ~~~i~~~~~~~~g 456 (458)
|++||++.+....
T Consensus 91 g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 91 GSTVHVLRKSWSG 103 (107)
T ss_dssp TCEEEEEESSCCS
T ss_pred CCEEEEEeCCCCC
Confidence 9999999876543
No 130
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.9e-14 Score=113.41 Aligned_cols=80 Identities=16% Similarity=0.371 Sum_probs=76.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
++.|+|.|++.+|+.+.++|.+++++..|++.++++.|+++++++|+|+|+.|.+++|+++|++++||+|+++.+++||.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999985
No 131
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4e-15 Score=116.06 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=64.5
Q ss_pred CeEEEEcCCCcEE--EE-EecCCccHHHHHHHhhc-ccCCCCCceEEEEe--ceeccCCCCccccccccccccce
Q 012713 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (458)
Q Consensus 1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~~K~~i~~-~~gip~~~q~l~~~--g~~L~d~~tl~~y~i~~~sti~l 69 (458)
|+|+|+++.|+.+ ++ +|+|++||.+||++|++ +.|+|+++|+|+|. |+.|+|++||++|+|.+++++++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999998775 58 99999999999999999 58999999999987 99999999999999999999876
No 132
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.53 E-value=1.5e-14 Score=113.68 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=69.9
Q ss_pred cCceeEEEEcCCCcEEEE-EecCCCcHHHHHHHHHhhcCCCCCceEEE---EcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 378 RGGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~Li---~~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
+..|+|+||. .|+.+.+ +|++++||.+||++|++..|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+++...
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 3469999996 7899999 99999999999999999999999999999 99999999999999999999999987653
No 133
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=1.4e-14 Score=115.11 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=68.0
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCC-CCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++.+|++++++|.+++||.+||++|+++. +++|+|+|+|+.|+|+ ++|.+|+|.+++++||+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 7899999999999999999999999999999988 8999999999999999 9999999999999999886543
No 134
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=2.6e-14 Score=110.98 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.1
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
+.+++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3456678999999999999999999999999999999999999999999999999999999999988653
No 135
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.52 E-value=3e-14 Score=117.36 Aligned_cols=79 Identities=29% Similarity=0.588 Sum_probs=72.7
Q ss_pred cCCeEEEEEec----------CCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccce
Q 012713 74 RGGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143 (458)
Q Consensus 74 ~~~~~i~vk~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i 143 (458)
++.++|.|+.+ +|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 46778888875 47899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecc
Q 012713 144 HLVLRLRGG 152 (458)
Q Consensus 144 ~l~~~~~~~ 152 (458)
||+++.+++
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987765
No 136
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.6e-15 Score=116.96 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=67.6
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEE--eceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~--~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|++|+.+.+|++++++|++++||.+||++|+++.|||+++|+|+| .|+ |+|+.+|++|+|.+++++|+++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 788999999999999999999999999999999999999999987 566 999999999999999999998854
No 137
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=4.2e-14 Score=111.73 Aligned_cols=76 Identities=24% Similarity=0.442 Sum_probs=69.1
Q ss_pred cCceeEEEEcCCCcEEEEEecCC-----CcHHHHHHHHHhhcCCCCCceEEEEcCeecCC-CCCccccCCCCCCEEEEEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~-----~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d-~~tl~~~~i~~~~~i~~~~ 451 (458)
+..|+|+|++ .|+.+.++|+++ +||.+||++|++..|+|+++|+|+|+|+.|+| +.+|++|+|++|++||++.
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 3468999999 488899999995 99999999999999999999999999999998 5689999999999999987
Q ss_pred Eec
Q 012713 452 RLR 454 (458)
Q Consensus 452 ~~~ 454 (458)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 138
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=1.9e-14 Score=111.73 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=66.7
Q ss_pred EEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEe
Q 012713 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
+++++.+|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 5788899999999999999999999999999999999999999999999999999999999999998754
No 139
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=8.7e-14 Score=108.77 Aligned_cols=81 Identities=16% Similarity=0.387 Sum_probs=77.1
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
++.|+|.|++.+|+.+.+.|.+++++..|++.++++.|+++++++|+|+|+.|.+++|+++|++++||+|+++.+++||+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 012713 458 F 458 (458)
Q Consensus 458 ~ 458 (458)
+
T Consensus 83 ~ 83 (91)
T 2io0_B 83 Y 83 (91)
T ss_dssp C
T ss_pred c
Confidence 3
No 140
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.50 E-value=1.6e-14 Score=113.56 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.5
Q ss_pred CeEEEEcCCCcEEEE-EecCCccHHHHHHHhhcccCCCCCceEEE---EeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~-~v~~~dtv~~~K~~i~~~~gip~~~q~l~---~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|+. +|+++++ +|.+++||.+||++|+++.|+|+++|+|+ |+|+.|+|+.+|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899996 8999999 99999999999999999999999999999 99999999999999999999999997643
No 141
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.50 E-value=2.5e-14 Score=110.87 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=60.5
Q ss_pred CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEE-------eceeccCCCCccccccccccccceeEe
Q 012713 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~-------~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
.+++.+.+++++++||.+||+||+.++|||+++|+|+| .|++|+|+++|.+|+|++++++|++-.
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 55677889999999999999999999999999999996 589999999999999999999999864
No 142
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=2.9e-14 Score=113.22 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=67.8
Q ss_pred CceeEEEEcCCCcEE-EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 379 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~-~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
..|+|+||. .|+.+ .++|++++||.+||++|++..|+|+++|+|+|.|+.|+|+ +|++|+|++|++|+++...
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 468999996 68899 6999999999999999999999999999999999999999 9999999999999987653
No 143
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.49 E-value=3.5e-14 Score=112.15 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=63.3
Q ss_pred CeEEEEcCCC--cEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEec--e---ec-cCCCCccccccccccccceeE
Q 012713 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--K---QL-EDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g--~---~L-~d~~tl~~y~i~~~sti~l~~ 71 (458)
+.|+|+..++ +++++++++++||.+||+||+.+.|+|+++|+|+|.| + +| +|+++|++|+|++++++|++-
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 3678887666 4899999999999999999999999999999999984 4 45 899999999999999999863
No 144
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=2.5e-14 Score=113.62 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.9
Q ss_pred CeEEEEcCCCcEE-EEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|+. +|+++ .++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 7899995 78999 5999999999999999999999999999999999999999 9999999999999997654
No 145
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=3.2e-14 Score=115.52 Aligned_cols=73 Identities=29% Similarity=0.403 Sum_probs=68.3
Q ss_pred CeEEEEcCCC---cEEEEEec--------C-CccHHHHHHHhhccc--CCCCCc-eEEEEeceeccCCCCcccccccccc
Q 012713 1 MQIFVKTLTG---KTITLEVE--------S-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (458)
Q Consensus 1 ~~i~~~~~~g---~~~~~~v~--------~-~dtv~~~K~~i~~~~--gip~~~-q~l~~~g~~L~d~~tl~~y~i~~~s 65 (458)
|+|+|++.+| +++++++. + ++||.+||++|+++. |+|+++ |+|+|+|+.|+|+++|.+|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 89999954 4 499999999999999 999999 9999999999999999999999999
Q ss_pred ccceeEee
Q 012713 66 TLHLVLRL 73 (458)
Q Consensus 66 ti~l~~~~ 73 (458)
++||+.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998864
No 146
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.4e-14 Score=111.44 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=70.6
Q ss_pred CeEEEEE-ecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEEeecc
Q 012713 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (458)
Q Consensus 76 ~~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (458)
.++|+|+ ...|..++++++++.||.+||++++...++|+++|+|+|+|+.|.|+.||.+|+|++|.+|||+.+....
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 4667777 5678899999999999999999999999999999999999999999999999999999999999976544
No 147
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=109.75 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=64.5
Q ss_pred ceeEEEEcCCCcEE--EE-EecCCCcHHHHHHHHHhh-cCCCCCceEEEEc--CeecCCCCCccccCCCCCCEEEE
Q 012713 380 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 380 ~~~i~vk~~~g~~~--~i-~v~~~~tV~~lK~~i~~~-~~~~~~~q~Li~~--G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
.|+|+|+++.|+.+ .+ +|+|++||.+||++|++. .|+|+++|+|+|. |+.|+|+.||++|+|++|++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 48999999998775 58 999999999999999994 7999999999987 99999999999999999999875
No 148
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=4.3e-14 Score=112.13 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=67.0
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
..|+|+|+. .|+.+.++|++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|+|++|++||++.+..
T Consensus 16 ~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 16 ELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSSC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEeccc
Confidence 458899984 6889999999999999999999999999999999999999995 5599999999999999876543
No 149
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=8.5e-14 Score=110.55 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=67.5
Q ss_pred CeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEe--cCeecCCCcchhhcccccccceeEEEEe
Q 012713 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (458)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~--~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (458)
.|.++++.++|+.++++|++++||.+||++|++++|||+++|+|+| .|+ |+|+.+|++|+|++|+++||++..
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 5788888899999999999999999999999999999999999996 566 999999999999999999998753
No 150
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.45 E-value=6.1e-15 Score=129.87 Aligned_cols=72 Identities=29% Similarity=0.415 Sum_probs=0.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
|+|+|++++|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.||+ ++++|||++|.+||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 899999999999873
No 151
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.45 E-value=2e-13 Score=105.78 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=60.4
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-------cCeecCCCCCccccCCCCCCEEEEEEEe
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-------~G~~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
...+.++.++++++||++||++|+..+|+|+++|+|+| .|+.|+|+++|++|+|++|++||++-+.
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 34567789999999999999999999999999999997 5899999999999999999999997653
No 152
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.45 E-value=2.6e-13 Score=107.13 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=64.3
Q ss_pred cCceeEEEEcCCCc--EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc--Ce---e-cCCCCCccccCCCCCCEEEE
Q 012713 378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---Q-LEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 378 ~~~~~i~vk~~~g~--~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~--G~---~-L~d~~tl~~~~i~~~~~i~~ 449 (458)
++.++|+|+..+++ .+++++++++||.+||++|+..+|+|+++|+|+|. |+ . ++|+++|++|+|++|++||+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 34577888877664 78999999999999999999999999999999998 45 3 48999999999999999987
Q ss_pred E
Q 012713 450 V 450 (458)
Q Consensus 450 ~ 450 (458)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 5
No 153
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.44 E-value=2.6e-13 Score=129.16 Aligned_cols=78 Identities=92% Similarity=1.273 Sum_probs=72.8
Q ss_pred ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012713 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~ 454 (458)
.+..|+|+||+++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998864
No 154
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.43 E-value=5.5e-13 Score=104.94 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=73.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+..|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.+++|+++|++++||+|+++.+++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999997
No 155
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.6e-13 Score=108.34 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.8
Q ss_pred CeEEEEcCCCcEEEEEecCC-----ccHHHHHHHhhcccCCCCCceEEEEeceeccC-CCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~-----dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d-~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++ .|+++++++.++ +||.+||++|+++.|+|+++|+|+|.|+.|.| +.+|.+|+|.+++++||+.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899999 589999999995 99999999999999999999999999999998 568999999999999998754
No 156
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.43 E-value=1.3e-13 Score=131.22 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998875
No 157
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=1.6e-13 Score=108.59 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred eEEEEcCCC--cEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEece---e----ccCCCCccccccccccccceeE
Q 012713 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~---~----L~d~~tl~~y~i~~~sti~l~~ 71 (458)
.++|...+. ++++++|++++||.+||+||+.++|||+++|+|+|.|+ . ++|+++|.+|+|++++++|++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 467775444 58999999999999999999999999999999999984 3 4889999999999999999875
No 158
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.42 E-value=1.9e-13 Score=133.94 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=71.5
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHh---hcCCCCCceEEEEcCeecCCCCCccccCCCCCCEE-EEEEEec
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 454 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~---~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i-~~~~~~~ 454 (458)
..|+|+||+.+|+.|.++|++++||.+||++|++ +.|+++++|+|+|+||.|+|+++|++|+|++|++| |++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4699999999999999999999999999999999 56799999999999999999999999999999998 5555665
Q ss_pred CC
Q 012713 455 GG 456 (458)
Q Consensus 455 ~g 456 (458)
+|
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 159
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=2.8e-13 Score=107.43 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=66.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEEEE
Q 012713 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~ 148 (458)
..|+|+|+ .+|+.+.+++++++||.+||++|++.+|+|+++|+|+|.|+.|+| .+|++|+|.++++|+|+.+
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 45889998 678999999999999999999999999999999999999999954 5999999999999998764
No 160
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=4.8e-13 Score=107.11 Aligned_cols=81 Identities=15% Similarity=0.335 Sum_probs=77.4
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+..|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.+++|+++|++++||+|+++.+++||+
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 012713 458 F 458 (458)
Q Consensus 458 ~ 458 (458)
.
T Consensus 102 ~ 102 (104)
T 1wz0_A 102 S 102 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 161
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=8.3e-13 Score=104.48 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=62.4
Q ss_pred ceeEEEEcCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe---e----cCCCCCccccCCCCCCEEEEE
Q 012713 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 380 ~~~i~vk~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~---~----L~d~~tl~~~~i~~~~~i~~~ 450 (458)
.+.+.|+..+. ..++++|++++||++||++|+..+|+|+++|+|+|.|+ . ++|+++|++|+|++|++||++
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 35666665544 47899999999999999999999999999999999983 3 589999999999999999875
Q ss_pred E
Q 012713 451 L 451 (458)
Q Consensus 451 ~ 451 (458)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 162
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=4.5e-13 Score=105.53 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|.|++.+|+.+.+.|.+++++..||++++++.|+|+++|+|+|+|++|.++.|+++|+++++++|++++++.++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987665
No 163
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.39 E-value=3.4e-13 Score=132.08 Aligned_cols=75 Identities=31% Similarity=0.561 Sum_probs=70.1
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhc---ccCCCCCceEEEEeceeccCCCCcccccccccccc-ceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~---~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti-~l~~~~~~ 75 (458)
|+|+|++++|++++++|.+++||.+||.+|++ +.|+|+++|+|+|.|+.|+|+++|.+|+|.++++| |++.+.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999999999999999999999999999999 68899999999999999999999999999999998 66666543
No 164
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.37 E-value=2e-12 Score=103.55 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=72.3
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+..|+|.|++ +|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.+++|+++|++++||+|+++.+++||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3558999999 99999999999999999999999999999999999999999999999999999999999999999997
No 165
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.35 E-value=4.4e-13 Score=108.69 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=66.1
Q ss_pred CeEEEEcCCCcEEEEEec-CCccHHHHHHHhhcccCCCCCceEEEEece-----------e----ccCCCCccccccccc
Q 012713 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~-~~dtv~~~K~~i~~~~gip~~~q~l~~~g~-----------~----L~d~~tl~~y~i~~~ 64 (458)
|+|+|++.+|+. +++|+ +++||.+||++|+++.|+|+++|+|+|.|+ . ++|+++|.+|++.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 89999 999999999999999999999999999998 4 588999999999999
Q ss_pred cccceeEe
Q 012713 65 STLHLVLR 72 (458)
Q Consensus 65 sti~l~~~ 72 (458)
+++||...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99999764
No 166
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.34 E-value=3.5e-12 Score=95.46 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=68.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
|+|.|++.+|+.+.+.|.++++++.|++..+++.|++++.++|+|+|+.|.+++|+++|++++||+|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 167
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.33 E-value=1.5e-12 Score=105.04 Aligned_cols=79 Identities=15% Similarity=0.388 Sum_probs=76.2
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
+..|+|.|++.+|+.+.+.|.+++++..|++.++++.|+++++++|+|.|+.|.+++|+++|++++||+|+++..++||
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 168
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.32 E-value=1.7e-12 Score=105.22 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=66.6
Q ss_pred ceeEEEEcCCCcEEEEEec-CCCcHHHHHHHHHhhcCCCCCceEEEEcCe-----------e----cCCCCCccccCCCC
Q 012713 380 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 443 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~-----------~----L~d~~tl~~~~i~~ 443 (458)
.|.|+||+.+|+. .++|+ +++||.+||++|++++++|+++|+|+|.|+ . ++|+++|++|+|++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999999976 79999 999999999999999999999999999988 4 58999999999999
Q ss_pred CCEEEEEEE
Q 012713 444 ESTLHLVLR 452 (458)
Q Consensus 444 ~~~i~~~~~ 452 (458)
|++||+...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999998654
No 169
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=8.4e-12 Score=95.08 Aligned_cols=74 Identities=9% Similarity=0.231 Sum_probs=70.3
Q ss_pred ecCceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 377 LRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
.++.|+|.|++.+|+ .+.+.|.+++++..|++.++++.|+++++++|+|+|+.|.+++|+++|++++||+|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 356799999999996 89999999999999999999999999999999999999999999999999999999985
No 170
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=1.9e-12 Score=102.69 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.7
Q ss_pred eEEEEcCCCc-EEEEEecCCccHHHHHHHhhcccCCCCCceEEEEec---ee----ccCCCCccccccccccccceeE
Q 012713 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g---~~----L~d~~tl~~y~i~~~sti~l~~ 71 (458)
.|+|+..++. .+++++.+++||.+||++|+.+.|+|+++|+|+|.| +. ++|+++|.+|+|.+++++|++.
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 4667765443 799999999999999999999999999999999987 43 5899999999999999999875
No 171
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=5e-12 Score=100.18 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=62.5
Q ss_pred eeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC---ee----cCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G---~~----L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
+.|+|+..... .++++|++++||.+||++|+..+|+|+++|+|+|.| +. ++|+++|++|+|++|++||++-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 67777776553 689999999999999999999999999999999987 43 5899999999999999998753
No 172
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=6.7e-12 Score=98.02 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|+.|.++.|+++|++.++++|+++++..++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999887654
No 173
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.27 E-value=1.5e-11 Score=101.97 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=64.7
Q ss_pred CceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC---ee----cCCCCCccccCCCCCCEEEEE
Q 012713 379 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 379 ~~~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G---~~----L~d~~tl~~~~i~~~~~i~~~ 450 (458)
..+.|+|+...+. .+++++++++||.+||++|+..+|+|+++|||+|.| +. ++|+++|++|+|++|++||++
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4577888876553 688999999999999999999999999999999987 42 589999999999999999987
Q ss_pred EE
Q 012713 451 LR 452 (458)
Q Consensus 451 ~~ 452 (458)
-.
T Consensus 85 d~ 86 (122)
T 1t0y_A 85 DV 86 (122)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 174
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.27 E-value=6.8e-12 Score=104.13 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=63.1
Q ss_pred CeEEEEcCCCc-EEEEEecCCccHHHHHHHhhcccCCCCCceEEEEec---e---e-ccCCCCccccccccccccceeEe
Q 012713 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g---~---~-L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|.|+|+..++. .+++++.+++||.+||.+|+.+.|+|+++|+|+|.| + + ++|+++|.+|+|.++++||++..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35677776553 789999999999999999999999999999999988 4 3 47899999999999999999863
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.24 E-value=1.3e-11 Score=92.31 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCcccccccccccccee
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~ 70 (458)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|+.|.++.|+++|++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999975
No 176
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.21 E-value=2.2e-11 Score=95.73 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|.|++.+|+.+.+.|.+++++..|+.+.+++.|+|+++++|+|+|+.|.++.|+++|++.++++|+++++..+
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999987665
No 177
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.20 E-value=1.5e-11 Score=95.52 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=63.1
Q ss_pred eeEEEEcCCCcEEEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEc--CeecC---CCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~--G~~L~---d~~tl~~~~i~~~~~i~~~~ 451 (458)
|+|+||+.+|+. .+. +++++||.+||+.|+++.|+++++|+|+|+ ++.|. |+++|++|||++|++||+.-
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 789999999975 588 999999999999999999999999999997 48874 78899999999999998753
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.18 E-value=1.4e-11 Score=95.65 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=63.9
Q ss_pred CeEEEEcCCCcEEEEE-ecCCccHHHHHHHhhcccCCCCCceEEEEe--ceecc---CCCCccccccccccccceeEe
Q 012713 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~--g~~L~---d~~tl~~y~i~~~sti~l~~~ 72 (458)
|+|.|++.+|+.. ++ +.+++||.+||++|+++.|+|+++|+|.|. ++.|+ ++.+|++|++.+++++|+...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 8999999999764 77 999999999999999999999999999997 47774 688999999999999998653
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.17 E-value=2.9e-11 Score=96.68 Aligned_cols=76 Identities=16% Similarity=0.376 Sum_probs=72.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCC
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|.|++.+|+.+.+.|.+++++..|+.+.+++.|+|+++++|+|+|+.|.++.|+.+|++.++++|++++++.++
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999877654
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.14 E-value=2.6e-11 Score=97.78 Aligned_cols=77 Identities=16% Similarity=0.428 Sum_probs=73.4
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceeccCCCCccccccccccccceeEeecCCe
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~ 77 (458)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+.+|++.++++|++++.+.++.
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887764
No 181
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.13 E-value=5.1e-11 Score=115.07 Aligned_cols=73 Identities=22% Similarity=0.436 Sum_probs=66.4
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE---EcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li---~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
..|+|+||. +|+.+.++|++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+++..
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 458899996 799999999999999999999999999999999999 8999999999999999999999988754
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.13 E-value=2.9e-10 Score=86.47 Aligned_cols=72 Identities=10% Similarity=0.258 Sum_probs=68.6
Q ss_pred CCeEEEEEecCCc-EEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeecCCCcchhhcccccccceeEE
Q 012713 75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (458)
Q Consensus 75 ~~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (458)
..|+|.|++.+|+ .+.+.|.+++++..|+++++++.|+|+++++|+|.|+.|.++.|+++|++.+|++|++.
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4689999999996 89999999999999999999999999999999999999999999999999999999874
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.11 E-value=1.9e-10 Score=91.93 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=71.2
Q ss_pred cceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
..|.|.|+. +|+.+.+.|.+++++..|++..+++.|+++++++|+|+|+.|.++.|.++|++.+|++|+++.++.||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 458899999 99999999999999999999999999999999999999999999999999999999999999988765
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.11 E-value=5.9e-11 Score=114.60 Aligned_cols=76 Identities=21% Similarity=0.429 Sum_probs=68.1
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEE---ecCeecCCCcchhhcccccccceeEEEEeec
Q 012713 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~---~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (458)
..|.|+|| .+|+.++++|++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+.++..
T Consensus 4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 35788998 5899999999999999999999999999999999999 8999999999999999999999999876544
No 185
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=7.6e-10 Score=89.29 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=73.2
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
.+.++|.|++.+|..+.|.|.+++++..|++..+++.|++++.++++|.|+.|.+++|.+++++++||+|+++..+.|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 456889999999999999999999999999999999999999999999999999999999999999999999987754
No 186
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1e-09 Score=95.11 Aligned_cols=99 Identities=12% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCcccccccCCCeEEEEEe--ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCC
Q 012713 358 RTLADYNIQKESTLHLVLR--LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 435 (458)
Q Consensus 358 ~~l~~y~I~~~~~l~l~~~--~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~t 435 (458)
.+|++-....+..--.-+. ..+.|+|.|+. +|..+.+.|.+++++..|++..+++.|+++..++++|+|+.|.+++|
T Consensus 33 ~~~~~~~~~~~~~~d~KP~~dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddT 111 (207)
T 3tix_A 33 GSLQDSEVNQEAKPEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQT 111 (207)
T ss_dssp ----------------------CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCC
T ss_pred ccccccccCCCCCCCCCCCCCCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCC
Confidence 3445444443333333222 24458888874 89999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEEEecCCC
Q 012713 436 LADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 436 l~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.+++++++||+|+++..+.||.
T Consensus 112 PeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 112 PEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp TTTTTCCTTEEEEECCCCCTTG
T ss_pred HHHcCCCCCCEEEEEEeccCCC
Confidence 9999999999999999999995
No 187
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.94 E-value=3.2e-09 Score=84.25 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=62.8
Q ss_pred CceeEEEEc---CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC-------eec-CCCCCccccCCCCCCEE
Q 012713 379 GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTL 447 (458)
Q Consensus 379 ~~~~i~vk~---~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G-------~~L-~d~~tl~~~~i~~~~~i 447 (458)
+.++|+|+. .+|+.+...+.+++||.+||.+|+..+|+|+..|+|.|.+ ..| +|..+|++|++.+|++|
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 345666764 4678889999999999999999999999999999999973 124 68889999999999999
Q ss_pred EEEEE
Q 012713 448 HLVLR 452 (458)
Q Consensus 448 ~~~~~ 452 (458)
|+...
T Consensus 88 ~V~d~ 92 (97)
T 1wjn_A 88 LVRWS 92 (97)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 98654
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=4e-09 Score=93.81 Aligned_cols=79 Identities=13% Similarity=0.310 Sum_probs=74.2
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.+.++|.|+. +|+...+.|.+++++..|++..+++.|+++.++|++|+|+.|.+++|.+++++++||+|+++..+.||.
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 4457888875 899999999999999999999999999999999999999999999999999999999999999998884
No 189
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.89 E-value=8e-07 Score=91.78 Aligned_cols=332 Identities=14% Similarity=0.173 Sum_probs=216.9
Q ss_pred cEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEecee--------ccC-----CCCccccccccccccceeEee----
Q 012713 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLRL---- 73 (458)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~--------L~d-----~~tl~~y~i~~~sti~l~~~~---- 73 (458)
...+++|..+.|+.++|+.|.+..|+|+++|||+..... +.+ +.++.++.- +...+.+.+..
T Consensus 36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~ 114 (530)
T 2ylm_A 36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPE 114 (530)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHH
T ss_pred CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccc
Confidence 334689999999999999999999999999999986433 111 112222211 22223333311
Q ss_pred -------------cCCeEEEEEecC--CcEE----EEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEec------CeecC-
Q 012713 74 -------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE- 127 (458)
Q Consensus 74 -------------~~~~~i~vk~~~--g~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~------g~~L~- 127 (458)
.+.+-|++|..+ .+.+ .+.|+..++|.++-..|.++.|+|++.-..+|. ...|+
T Consensus 115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~ 194 (530)
T 2ylm_A 115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD 194 (530)
T ss_dssp HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence 123788888764 3343 256899999999999999999999988777775 34466
Q ss_pred CCcchhhc--ccccccceeEEEEee------------------cceeeEEEe---ccCcEEEeeccCCCcHHHHHHHHHH
Q 012713 128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQD 184 (458)
Q Consensus 128 d~~tl~~y--~i~~~s~i~l~~~~~------------------~~m~i~v~~---~~g~~~~~~v~~~~tV~~LK~~I~~ 184 (458)
.+.|+.+. .+.+|+.|....... ..+.|.++. .+...+.++++...|-.+|-++|++
T Consensus 195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~ 274 (530)
T 2ylm_A 195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ 274 (530)
T ss_dssp SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 57899999 999999987776432 124455553 2356799999999999999999999
Q ss_pred HhCCCccCeEEEe----cCe---ec--ccCcccccccc----CCCCEEEEEE-Ee-------cCCeEEEEEccCCc--eE
Q 012713 185 KEGIPPDQQRLIF----AGK---QL--EDGRTLADYNI----QKESTLHLVL-RL-------RGGMQIFVKTLTGK--TI 241 (458)
Q Consensus 185 ~~gip~~~q~L~~----~g~---~L--~d~~tL~~~~i----~~~s~i~l~~-~~-------~~~~~i~v~~~~g~--~i 241 (458)
+.+++|+..||+- .|+ .+ ..+.+|.+.=- ..-+.+..-+ .. ...+.++......+ .+
T Consensus 275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~ 354 (530)
T 2ylm_A 275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEI 354 (530)
T ss_dssp HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEE
T ss_pred HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEE
Confidence 9999999988862 222 11 22344443211 1112232221 10 12344543333322 55
Q ss_pred EEEeeccchHHHHHHHHhhhhCCCC---CceEEE--eCCc---ccCCCCcccccccCCCCeEEEEEeec--------Cce
Q 012713 242 TLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGM 305 (458)
Q Consensus 242 ~~~v~~~dtV~~LK~~i~~~~gip~---~~q~L~--~~g~---~l~d~~tL~~~~i~~~~ti~l~~~~~--------~~~ 305 (458)
.+.+..+.||++|-+.+..+.+++. ...|+. ++++ .+.++.++...+=....++++.-... +.+
T Consensus 355 ~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~ 434 (530)
T 2ylm_A 355 TLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEM 434 (530)
T ss_dssp EECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEE
T ss_pred EEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcE
Confidence 6667779999999999999999974 446664 5555 35566666544332244554432211 111
Q ss_pred eEEE----E---ccCCceEEEeecCCCcHHHHHHhhhcccCCCCC
Q 012713 306 QIFV----K---TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (458)
Q Consensus 306 ~i~v----~---~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~ 343 (458)
-|.| | ..-|..+.+.|.++.|..++|++|+.++|++..
T Consensus 435 li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 435 LVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred EEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 1222 1 124678889999999999999999999998853
No 190
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.84 E-value=9.4e-09 Score=81.53 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=61.0
Q ss_pred eeeEEEe---ccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecC-------eec-ccCccccccccCCCCEEEE
Q 012713 153 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 153 m~i~v~~---~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g-------~~L-~d~~tL~~~~i~~~s~i~l 221 (458)
+.|+|.. .+|..+...++++.||++||.+|+..+|+|+..|+|.|.+ ..| +|..+|++|++.+|++|++
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4555553 4677888999999999999999999999999999999873 224 7889999999999999998
Q ss_pred EEE
Q 012713 222 VLR 224 (458)
Q Consensus 222 ~~~ 224 (458)
...
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 763
No 191
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.82 E-value=1.1e-05 Score=83.31 Aligned_cols=347 Identities=12% Similarity=0.168 Sum_probs=224.8
Q ss_pred EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEE-ecCee-------cC-----CCcchhhcccccccceeEEEEe------
Q 012713 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ-------LE-----DGRTLADYNIQKESTLHLVLRL------ 149 (458)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~-~~g~~-------L~-----d~~tl~~y~i~~~s~i~l~~~~------ 149 (458)
.++.|...+|+.+||+.+++..|+|+++|||- +..++ +. ...++.++.- .++.+.+.+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 45789999999999999999999999999984 32221 11 1223333311 23344444421
Q ss_pred -----------ecceeeEEEecc--CcEE----EeeccCCCcHHHHHHHHHHHhCCCccCeEEEec------Ceecc-cC
Q 012713 150 -----------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 205 (458)
Q Consensus 150 -----------~~~m~i~v~~~~--g~~~----~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~------g~~L~-d~ 205 (458)
...+-||+|..+ .++. .+.++.+++|++|-..|.++.|+|++.-...|. ...|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 013668888664 3343 367889999999999999999999987666653 34466 68
Q ss_pred cccccc--ccCCCCEEEEEEEecCC------------------eEEEEEc---cCCceEEEEeeccchHHHHHHHHhhhh
Q 012713 206 RTLADY--NIQKESTLHLVLRLRGG------------------MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 262 (458)
Q Consensus 206 ~tL~~~--~i~~~s~i~l~~~~~~~------------------~~i~v~~---~~g~~i~~~v~~~dtV~~LK~~i~~~~ 262 (458)
.|+.+. ++.+|+.|-.-...... +.|..+. .+...+.+++....|-.+|.+.+.++.
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 99999988555432211 2232332 335679999999999999999999999
Q ss_pred CCCCCceEEEeC----Ccc-----cCCCCcccccc----cCCCCeEEEEEee--------cCceeEEEEccCC--ceEEE
Q 012713 263 GIPPDQQRLIFA----GKQ-----LEDGRTLADYN----IQKESTLHLVLRL--------RGGMQIFVKTLTG--KTITL 319 (458)
Q Consensus 263 gip~~~q~L~~~----g~~-----l~d~~tL~~~~----i~~~~ti~l~~~~--------~~~~~i~v~~~~g--~~~~l 319 (458)
+++|+.-||.-. +.+ ...+.+|.+.= -..-+.++..... ...+.|+.-.... ..+.+
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l 356 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL 356 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence 999999888632 221 22234443321 1112455544311 1224454322221 26788
Q ss_pred eecCCCcHHHHHHhhhcccCCCC---CCeeEE--ecC---eecCCCCCcccccccCCCeEEEEEeecC--------ceeE
Q 012713 320 EVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLRG--------GMQI 383 (458)
Q Consensus 320 ~v~~~~ti~~vK~~I~~~~~i~~---~~q~L~--~~g---~~L~~~~~l~~y~I~~~~~l~l~~~~~~--------~~~i 383 (458)
.|.++.||+||-..++.+.+++. ...+|. +++ ++++++.+|...+=....++++-....+ .+-|
T Consensus 357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li 436 (530)
T 2ylm_A 357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV 436 (530)
T ss_dssp CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence 88999999999999999999873 334432 344 6788888887654333555555443222 2334
Q ss_pred EEE----cC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCC---ceE--EEEcCe--ecCCCCCc
Q 012713 384 FVK----TL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQR--LIFAGK--QLEDGRTL 436 (458)
Q Consensus 384 ~vk----~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~---~q~--Li~~G~--~L~d~~tl 436 (458)
.|- .. -|..|.+.|.++.|+.++|+.|.++.|++.+ ..+ ++-.++ -|+|+..+
T Consensus 437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~~ 503 (530)
T 2ylm_A 437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYE 503 (530)
T ss_dssp EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTCC
T ss_pred EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccce
Confidence 441 11 2667899999999999999999999998754 333 343444 46665433
No 192
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.79 E-value=6.8e-10 Score=97.54 Aligned_cols=81 Identities=12% Similarity=0.265 Sum_probs=2.0
Q ss_pred ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.++.|+|.| ..+|+...|.|.+++++..|++..+++.|++++.+|++|+|+.+.+++|.+++++++||+|+++..+.||
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 355688899 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 012713 457 EF 458 (458)
Q Consensus 457 ~~ 458 (458)
.+
T Consensus 97 ~~ 98 (227)
T 3v7o_A 97 LT 98 (227)
T ss_dssp CC
T ss_pred ch
Confidence 64
No 193
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=4.9e-08 Score=78.68 Aligned_cols=76 Identities=16% Similarity=0.361 Sum_probs=70.7
Q ss_pred cceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEec
Q 012713 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~ 226 (458)
..+.|.|+..+|..+.+.|.+++++..|+...+++.|++++.++|+|+|+.|.++.|.+++++.+|++|+++....
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 3577888888899999999999999999999999999999999999999999999999999999999999987643
No 194
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.64 E-value=2e-07 Score=68.07 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=64.6
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCC-ceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
+.+..++.....+.+.|.++.+|.+|.+..+++.|++++ ..+|.|.|..|...+++++|.+.+||.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 345556666677899999999999999999999999998 99999999999999999999999999999875
No 195
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.7e-07 Score=83.34 Aligned_cols=78 Identities=13% Similarity=0.300 Sum_probs=72.5
Q ss_pred ecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 150 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
...+.|.|+ .+|..+.+.+.+++++..|+...+++.|+|++++||+|+|+.|.++.|.+++++.+|++|+++....+|
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 445778886 488999999999999999999999999999999999999999999999999999999999999998776
No 196
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.5e-07 Score=81.58 Aligned_cols=79 Identities=11% Similarity=0.288 Sum_probs=73.2
Q ss_pred ecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCCe
Q 012713 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (458)
Q Consensus 150 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~ 229 (458)
...+.|.|+ .+|..+.+.|.+++++..|++..+++.|+|+..++|+|+|+.|+++.|.+++++.+|++|+++....||.
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 345677776 4889999999999999999999999999999999999999999999999999999999999999998884
No 197
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.50 E-value=5.9e-07 Score=70.35 Aligned_cols=74 Identities=12% Similarity=0.264 Sum_probs=68.5
Q ss_pred ecCceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 377 LRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
.++.++|.|+..+|. .+.+.|.+++++..|....+++.|++++..+++|.|..|..++|.+++++++||+|.++
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 345688899999995 78999999999999999999999999999999999999999999999999999999874
No 198
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.41 E-value=6.9e-07 Score=80.94 Aligned_cols=82 Identities=12% Similarity=0.295 Sum_probs=75.3
Q ss_pred eecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 376 ~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
...+.++|.|+. +|+...+.|.+++++..|++..+++.|+++++++++|.|+.+.+++|..++.++++|+|.++.++.|
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 345668888887 7888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 012713 456 GEF 458 (458)
Q Consensus 456 g~~ 458 (458)
|++
T Consensus 96 g~t 98 (209)
T 3uf8_A 96 GST 98 (209)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 199
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.40 E-value=1.8e-07 Score=70.97 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=60.7
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCee-----cCCCCCccccCCCCCCEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-----LEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~-----L~d~~tl~~~~i~~~~~i~~ 449 (458)
.+|.|.|++.+|. +.+++++++|+.+|+++|++.++++++.|.+.++-.. +.++.+|+++|++.||.|++
T Consensus 3 ~~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 3 ESIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC
T ss_pred CcEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEE
Confidence 4689999999985 5789999999999999999999999888887766554 34788999999999999975
No 200
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.36 E-value=2.4e-06 Score=65.56 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=67.9
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
..++|.|+. .|....|.+..++..+.|++..+++.|++++..|++|.|..+.+++|.+++++++||+|.+++-
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 347888885 6888899999999999999999999999999999999999999999999999999999998764
No 201
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.33 E-value=6.5e-08 Score=85.08 Aligned_cols=82 Identities=12% Similarity=0.304 Sum_probs=1.8
Q ss_pred EeecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecC
Q 012713 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 148 ~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~ 227 (458)
.+...|.|.| ..+|..+.+.|.+++++..|++..+++.|+|++++||+|+|+.+.++.|.+++++.+|++|+++....|
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 3455688888 678999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeE
Q 012713 228 GMQ 230 (458)
Q Consensus 228 ~~~ 230 (458)
|..
T Consensus 96 G~~ 98 (227)
T 3v7o_A 96 GLT 98 (227)
T ss_dssp CCC
T ss_pred Cch
Confidence 853
No 202
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.30 E-value=4.5e-06 Score=60.99 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=62.7
Q ss_pred eeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCcc-CeEEEecCeecccCccccccccCCCCEEEEEE
Q 012713 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~ 223 (458)
.+..+......+.+.++++.+|.+|-+.-+.+.|||++ ..+|.|.|..|+.+.++++|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 44455555567889999999999999999999999999 99999999999999999999999999998764
No 203
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.24 E-value=1.4e-07 Score=91.12 Aligned_cols=80 Identities=13% Similarity=0.292 Sum_probs=0.4
Q ss_pred ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 377 ~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
..+.++|.|++ +|+...+.|.+++++..|++..+++.|++++.++++|+|+.|.+++|.+++++++||+|+++..+.||
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 34567888887 67888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 012713 457 E 457 (458)
Q Consensus 457 ~ 457 (458)
-
T Consensus 97 ~ 97 (360)
T 3ix6_A 97 M 97 (360)
T ss_dssp C
T ss_pred H
Confidence 3
No 204
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.19 E-value=1.4e-06 Score=66.08 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=58.4
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCee---c--ccCccccccccCCCCEEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~---L--~d~~tL~~~~i~~~s~i~l~ 222 (458)
.|.|.|+..+| ++.+++++++|+.+|+++|++.+++|++.|.+.+.... | .++.+|+++|+..|+.|++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47788888776 67788999999999999999999999998887754333 3 47889999999999999765
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.15 E-value=4.9e-06 Score=64.28 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=45.2
Q ss_pred cCCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEeceecc--CCCCccccc
Q 012713 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYN 60 (458)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~--d~~tl~~y~ 60 (458)
...+..+++.|.+.+||..+|++|+++.|||+.+|+|+|.|+.|. .++.-..|.
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 346789999999999999999999999999999999999998864 333344443
No 206
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.10 E-value=0.00018 Score=71.15 Aligned_cols=134 Identities=24% Similarity=0.353 Sum_probs=107.3
Q ss_pred CcEEEeeccCCCcHHHHHHHHHHHhC----CCccCeEEEe------cCeecccCccccccccCCCCEEEEEEEecCCeEE
Q 012713 162 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 231 (458)
Q Consensus 162 g~~~~~~v~~~~tV~~LK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~~i 231 (458)
+-+.++.+++++||.+.-..|.++.. .+.++.-|+. .|.-|++.++|..|++++|+.+....+. +.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence 66788999999999999999988764 3677888886 4566999999999999999988776544 578
Q ss_pred EEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeCC---------cccCCCCcccccccCCCCeEEEE
Q 012713 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---------KQLEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 232 ~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~g---------~~l~d~~tL~~~~i~~~~ti~l~ 298 (458)
.|..++|....+.++++.|+.++-..++++.|+.... +-|.+.. .-++..+++...+.....++++.
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 8889999999999999999999999999999987665 5565532 12455677777776665666554
No 207
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.00 E-value=1.5e-05 Score=61.49 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=46.2
Q ss_pred ecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeec--CCCcchhhccc
Q 012713 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI 137 (458)
Q Consensus 83 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L--~d~~tl~~y~i 137 (458)
..++..+.+.+.+++||..+|++|++++|||+++|+|+|.|+.| +.+..-..|.-
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 34677889999999999999999999999999999999999775 45555555543
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.99 E-value=0.00023 Score=70.35 Aligned_cols=136 Identities=24% Similarity=0.353 Sum_probs=107.5
Q ss_pred CceEEEeecCCCcHHHHHHhhhcccC----CCCCCeeEEe------cCeecCCCCCcccccccCCCeEEEEEeecCceeE
Q 012713 314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 383 (458)
Q Consensus 314 g~~~~l~v~~~~ti~~vK~~I~~~~~----i~~~~q~L~~------~g~~L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i 383 (458)
+-+-++...|+.||.++..+|.++.. -+++..-|.. .|+=|.++++|..|++++++.++.-. .++.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence 56779999999999999999988764 3466667776 25668899999999999999998874 47899
Q ss_pred EEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCC-CCceEEEEcC---------eecCCCCCccccCCCCCCEEEEEEE
Q 012713 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 384 ~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~-~~~q~Li~~G---------~~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
.|..++|....+.|++..|+.++-+.++.+.|+. .+..-|.+.. .-|+-.+++.+.+......+++.+|
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 9999999999999999999999999999999974 4455565532 2345556777766666666665444
No 209
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.99 E-value=2.4e-05 Score=61.11 Aligned_cols=72 Identities=13% Similarity=0.278 Sum_probs=65.7
Q ss_pred cceeeEEEeccCc-EEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEE
Q 012713 151 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 151 ~~m~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~ 222 (458)
..+.|.|+..+|. .+.+.+.++++...|....+++.|++++..+|.|+|..|..+.|.+++++.+|++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3466777777884 78999999999999999999999999999999999999999999999999999999875
No 210
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.96 E-value=1.9e-05 Score=60.00 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCeEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEEEEee
Q 012713 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (458)
Q Consensus 227 ~~~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~ 301 (458)
+||.+.|-..+++..++.|.++.++.++-+..|+++|+.++++.|.|+++.++-..+++.-|+.+|+.+.|+...
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 578888999999999999999999999999999999999999999999999999999999999999999998643
No 211
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.89 E-value=1.7e-06 Score=86.32 Aligned_cols=78 Identities=13% Similarity=0.323 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+.+.|.|++ +|....+.|.++++...|++..+++.|+++.+++++|+|+.|.+++|.+++++++||+|+++..+.||.
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 346777877 777888999999999999999999999999999999999999999999999999999999999999884
No 212
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.84 E-value=7.2e-05 Score=67.58 Aligned_cols=150 Identities=13% Similarity=0.195 Sum_probs=104.7
Q ss_pred EeecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecC
Q 012713 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 148 ~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~ 227 (458)
.+...+.|.|+. +|..+.+.+.++++...|++..+++.|+|+++++|+|+|+.+.++.|..+..+.++++|.+.....+
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 344556777776 7778899999999999999999999999999999999999999999999999999999999998887
Q ss_pred CeEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEEEEeec-Ccee
Q 012713 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR-GGMQ 306 (458)
Q Consensus 228 ~~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~~-~~~~ 306 (458)
|..+ +.+.+|-.+... ..|.-. .++.|+.+.+..... ..-.
T Consensus 96 g~t~-~~~~sGl~~~vl----------------------------~~G~G~---------~~~~gd~V~v~Y~g~l~dG~ 137 (209)
T 3uf8_A 96 GSTV-VTTESGLKYEDL----------------------------TEGSGA---------EARAGQTVSVHYTGWLTDGQ 137 (209)
T ss_dssp CCCC-EECTTSCEEEEE----------------------------ECCCSC---------BCCTTCEEEEEEEEEETTSC
T ss_pred cccc-cCCCCceEEEEE----------------------------EcCCCC---------cCCCCCEEEEEEEEEECCCC
Confidence 7643 344444322221 122111 134555544443321 1123
Q ss_pred EEEEcc-CCceEEEeecCCCcHHHHHHhhhc
Q 012713 307 IFVKTL-TGKTITLEVESSDTIDNVKAKIQD 336 (458)
Q Consensus 307 i~v~~~-~g~~~~l~v~~~~ti~~vK~~I~~ 336 (458)
++-.+. .++.+++.+-.+..|.-+-+.+..
T Consensus 138 ~fdss~~~~~P~~f~lG~g~vi~G~eeaL~g 168 (209)
T 3uf8_A 138 KFDSSKDRNDPFAFVLGGGMVIKGWDEGVQG 168 (209)
T ss_dssp EEEESGGGTCCEEEETTSSSSCHHHHHHHTT
T ss_pred EEEEccccCCCEEEEeCCCccchhHHHHHhC
Confidence 333333 256677777777777777666654
No 213
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.79 E-value=3e-06 Score=81.78 Aligned_cols=82 Identities=13% Similarity=0.327 Sum_probs=1.3
Q ss_pred EeecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecC
Q 012713 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 148 ~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~ 227 (458)
.+...+.|.|+. +|..+.+.+.++++...|++..+++.|++++.++|.|+|+.+.++.|.+++++++|++|+++....|
T Consensus 17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 345567777876 6788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeE
Q 012713 228 GMQ 230 (458)
Q Consensus 228 ~~~ 230 (458)
|+.
T Consensus 96 ~~~ 98 (360)
T 3ix6_A 96 GMR 98 (360)
T ss_dssp -CH
T ss_pred hHH
Confidence 865
No 214
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.79 E-value=9.2e-05 Score=56.29 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=69.1
Q ss_pred ecceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEe
Q 012713 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 150 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~ 225 (458)
.++|.|.|-..+++...+.|.|++++.++-+.-.+++|+.+++..|.|+++.|+-..++.-.|+.+|+.+.|+...
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999987543
No 215
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.68 E-value=0.00022 Score=54.74 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=65.4
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEE
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~ 224 (458)
+.|.|+ .+|....+.+..++....|....+++.|++++..++.|.|..+.++.|.++.++.+|++|.+++.
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 566677 46888999999999999999999999999999999999999999999999999999999998764
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.54 E-value=9.4e-05 Score=60.58 Aligned_cols=70 Identities=26% Similarity=0.373 Sum_probs=57.8
Q ss_pred eeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCcc-CeEEEe-----------------------------------
Q 012713 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----------------------------------- 197 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~~----------------------------------- 197 (458)
.+.|++++|...++.|+.+.+|.+++..|+.+.||+.. ...|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47899999999999999999999999999999999854 222221
Q ss_pred ---cCeecccCccccccccCCCCEEEEEE
Q 012713 198 ---AGKQLEDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 198 ---~g~~L~d~~tL~~~~i~~~s~i~l~~ 223 (458)
.+..|++++||.++||.+++++.|-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 12567889999999999999986654
No 217
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.46 E-value=0.00029 Score=52.84 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=58.8
Q ss_pred eeEEEEc--CCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-----CceEEEEcCeecCCCCCccccCCCCCCEEEE
Q 012713 381 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~vk~--~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~-----~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~ 449 (458)
++|++.. ..++.|.++++...||+.|++.+.+.++++. ...+..-.|..|.+++.|+||+|.+||.+.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 5677775 5789999999999999999999999998643 3455666788999999999999999999965
No 218
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.44 E-value=0.00015 Score=59.40 Aligned_cols=72 Identities=26% Similarity=0.396 Sum_probs=59.6
Q ss_pred eEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCC-------------------------------------CeeEE
Q 012713 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 348 (458)
Q Consensus 306 ~i~v~~~~g~~~~l~v~~~~ti~~vK~~I~~~~~i~~~-------------------------------------~q~L~ 348 (458)
.+.|+..+|...++.|..+.||.+++..|+.+.||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47788999999999999999999999999999999854 22232
Q ss_pred ec--CeecCCCCCcccccccCCCeEEEEEee
Q 012713 349 FA--GKQLEDGRTLADYNIQKESTLHLVLRL 377 (458)
Q Consensus 349 ~~--g~~L~~~~~l~~y~I~~~~~l~l~~~~ 377 (458)
.. +.-|+++.+|.++||.++++|.|..++
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrKf 123 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRKF 123 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEESS
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEEE
Confidence 21 267777999999999999998887653
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.26 E-value=4.1e-05 Score=76.22 Aligned_cols=82 Identities=11% Similarity=0.320 Sum_probs=0.0
Q ss_pred cceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCCeE
Q 012713 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 230 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~~ 230 (458)
..+.|.|+. +|..+.+.+.++++...|++..+++.|+++.+++|.|+|+.+.++.|.+++++.+|++|++.....+|..
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 345666665 6778889999999999999999999999999999999999999999999999999999999998887755
Q ss_pred EEE
Q 012713 231 IFV 233 (458)
Q Consensus 231 i~v 233 (458)
.+.
T Consensus 108 ~~~ 110 (389)
T 4da1_A 108 LYF 110 (389)
T ss_dssp ---
T ss_pred cce
Confidence 443
No 220
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.95 E-value=0.0039 Score=47.32 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=59.2
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE--EcCeec---CCCCCccccCCCCCCEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li--~~G~~L---~d~~tl~~~~i~~~~~i~~ 449 (458)
+..+|.||.++|+.+.-....++||.+|..-|.. .+.++....|+ |-.+.| +.++||.++|+.++++|.+
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 4468899999999988889999999999999988 56777888888 447888 3568999999999998865
No 221
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.85 E-value=0.0032 Score=47.11 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=56.7
Q ss_pred eeEEEe--ccCcEEEeeccCCCcHHHHHHHHHHHhCCCc-----cCeEEEecCeecccCccccccccCCCCEEEE
Q 012713 154 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 154 ~i~v~~--~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-----~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l 221 (458)
.|++.. ..++.+.+.++...||..|.+.+.+..+++. ...++...|..|.++..|++|+|.+|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 344443 4789999999999999999999999998764 2345557899999999999999999999865
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.76 E-value=0.0055 Score=46.48 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=59.3
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeec---ccCccccccccCCCCEEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~~~i~~~s~i~l~ 222 (458)
...|.|+..+|..+.-....++||.+|...|.. .+.+...+.|. |-.+.+ +.+.||.+.|+.+.++|.+-
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 356778889999888889999999999999988 67788888888 667888 45789999999998888764
No 223
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.30 E-value=0.011 Score=46.79 Aligned_cols=63 Identities=35% Similarity=0.418 Sum_probs=46.0
Q ss_pred CceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----CeecCCCC-------------CcccccccCC
Q 012713 314 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----GKQLEDGR-------------TLADYNIQKE 368 (458)
Q Consensus 314 g~~~~l~v~~~~ti~~vK~~I~~~--~~i~~~------~q~L~~~----g~~L~~~~-------------~l~~y~I~~~ 368 (458)
+..+.+.|...|||..+|++|.+. .|.|.. ...|-+. |+.|.|.. ||++|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 456899999999999999999873 455543 3446553 56777722 8899999999
Q ss_pred CeEEEEEe
Q 012713 369 STLHLVLR 376 (458)
Q Consensus 369 ~~l~l~~~ 376 (458)
+++-|+++
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99999865
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.22 E-value=0.026 Score=45.02 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=60.9
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecC---CCCCccccCCCCCCEEEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~---d~~tl~~~~i~~~~~i~~~~ 451 (458)
+..+|.||.++|+.+.-....++||.+|.+-|....+.+.....|+- -.+.+. .++||.+.++.+.+++++.-
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 35789999999999999999999999999999998777666677764 577786 36899999999988886543
No 225
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.00 E-value=0.017 Score=47.25 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=59.6
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE--EcCeec--C-CCCCccccCCCCCCEEEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHL 449 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li--~~G~~L--~-d~~tl~~~~i~~~~~i~~ 449 (458)
.+...|.||.++|+.+.-...+++||.+|..-|... +.+.....|+ |-.+.| . .++||.++++.+..+|++
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv 116 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 116 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEE
Confidence 445789999999999999999999999999999887 7777777777 448888 3 478999999999888854
No 226
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.98 E-value=0.029 Score=44.68 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=61.7
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeecc---cCccccccccCCCCEEEEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~s~i~l~~~ 224 (458)
...|.|+.++|..+.-....++||.+|.+.|....+.+...+.|. |-.+.+. .+.||.+.|+.+..+|.+...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 356788889999999999999999999999999888877778887 6677775 478999999999888876654
No 227
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.92 E-value=0.018 Score=47.12 Aligned_cols=66 Identities=29% Similarity=0.465 Sum_probs=48.0
Q ss_pred CceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----Ce-ecCCCC-------------CcccccccC
Q 012713 314 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----GK-QLEDGR-------------TLADYNIQK 367 (458)
Q Consensus 314 g~~~~l~v~~~~ti~~vK~~I~~~--~~i~~~------~q~L~~~----g~-~L~~~~-------------~l~~y~I~~ 367 (458)
...+++.|..+|||..+|++|.+. .|+|.. ..-|-++ |+ .|.|.. ||++|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 367999999999999999999974 456542 2234442 44 466632 899999999
Q ss_pred CCeEEEEEeecC
Q 012713 368 ESTLHLVLRLRG 379 (458)
Q Consensus 368 ~~~l~l~~~~~~ 379 (458)
|+++-|+++.+.
T Consensus 120 ga~l~l~~~~~~ 131 (138)
T 2r2o_A 120 GATVALVPCLTK 131 (138)
T ss_dssp TCEEEEEEC---
T ss_pred CCEEEEEECCCc
Confidence 999999987553
No 228
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.87 E-value=0.046 Score=44.13 Aligned_cols=66 Identities=26% Similarity=0.356 Sum_probs=49.2
Q ss_pred cCCceEEEeecCCCcHHHHHHhhhcc--cCCCC------CCeeEEec----Ce-ecCCCC-------------Ccccccc
Q 012713 312 LTGKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GK-QLEDGR-------------TLADYNI 365 (458)
Q Consensus 312 ~~g~~~~l~v~~~~ti~~vK~~I~~~--~~i~~------~~q~L~~~----g~-~L~~~~-------------~l~~y~I 365 (458)
.++..+++.|..+|||..+|++|.+. .|.|. ....|-+. |+ .|.|.. ||++|+|
T Consensus 14 ~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 14 CGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp SCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 34567999999999999999999873 34444 33446653 34 366622 8999999
Q ss_pred cCCCeEEEEEee
Q 012713 366 QKESTLHLVLRL 377 (458)
Q Consensus 366 ~~~~~l~l~~~~ 377 (458)
.+|+++-|+++.
T Consensus 94 ~dgatv~l~~~~ 105 (127)
T 3h6n_A 94 PEGASLAMSLID 105 (127)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEEcc
Confidence 999999998764
No 229
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.79 E-value=0.038 Score=40.92 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=59.9
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc---CeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~---G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
.++.|.....+.+.+.|+|..+..++--.|+++..+.++.-.|.-. +..|+-+++|.||||++ ++++-.++.
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~e 85 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNRE 85 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCCC
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheeccccc
Confidence 4566677777888999999999999999999999999998888764 67899999999999987 555544443
No 230
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.68 E-value=0.028 Score=51.28 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=56.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCC-ceEEEE-c----CeecCC-CCCccccCCCCCCEEEEEEEecCCCC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~Li~-~----G~~L~d-~~tl~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
.+++.++..+||.+|++.+...++++++ +.||-. . ...|.| +.||.++++.+|..|.+=+|..+|.|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 3567889999999999999999999887 688764 2 346665 58999999999999988899899987
No 231
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.56 E-value=0.085 Score=42.98 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=60.3
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCeec--C-CCcchhhcccccccceeEE
Q 012713 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLV 146 (458)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~--~~g~~L--~-d~~tl~~y~i~~~s~i~l~ 146 (458)
.....|.|+.++|..+.-....++||.+|..-|... +.+.....|+ |-.+.| + .+.||.+.++.+.+++.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 345788999999999999999999999999999876 7777777777 668888 3 4799999999988887765
No 232
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.29 E-value=0.034 Score=44.40 Aligned_cols=64 Identities=30% Similarity=0.469 Sum_probs=47.5
Q ss_pred CceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----Ce-ecCCCC-------------CcccccccC
Q 012713 314 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----GK-QLEDGR-------------TLADYNIQK 367 (458)
Q Consensus 314 g~~~~l~v~~~~ti~~vK~~I~~~--~~i~~~------~q~L~~~----g~-~L~~~~-------------~l~~y~I~~ 367 (458)
...+.+.|..+|||..+|++|.+. .|.|.. ...|.+. |+ .|.|.. ||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 456889999999999999999873 455543 3345553 23 466622 889999999
Q ss_pred CCeEEEEEee
Q 012713 368 ESTLHLVLRL 377 (458)
Q Consensus 368 ~~~l~l~~~~ 377 (458)
|+++-|+++.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999999764
No 233
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.24 E-value=0.12 Score=40.75 Aligned_cols=62 Identities=37% Similarity=0.461 Sum_probs=44.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhHH--hCCCC------CCeEEEec----CeecCCC-------------cchhhcccccc
Q 012713 86 GKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GKQLEDG-------------RTLADYNIQKE 140 (458)
Q Consensus 86 g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~Q~L~~~----g~~L~d~-------------~tl~~y~i~~~ 140 (458)
+..+++.|-..|||.++|+||.+. .|.|- +...|-|. |+.|.|. .||++|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 456888899999999999999874 35553 34445552 4556541 79999999999
Q ss_pred cceeEEE
Q 012713 141 STLHLVL 147 (458)
Q Consensus 141 s~i~l~~ 147 (458)
+++.|..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 234
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.20 E-value=0.053 Score=48.94 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=55.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCC-ceEEEE---c--CeecCC-CCCccccCCCCCCEEEEEEEecCCCC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---A--GKQLED-GRTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~Li~---~--G~~L~d-~~tl~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
.+++.++..+||.+|++.+.+.++++++ +.||-. + ...|.| ++||.++++.+|..|.+=+|..+|.|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W 214 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW 214 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 4678899999999999999999999986 677642 2 335666 57999999999999988899899987
No 235
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.91 E-value=0.11 Score=41.38 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=57.0
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecC--CCCCccccCCCCCCEEEEE
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--DGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~--d~~tl~~~~i~~~~~i~~~ 450 (458)
..+|.||.++|+.+.-....++||.+|..-|... +..+....|+- -.+.|. .++||.++++.+..++.+-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 4688899999999888899999999999999865 45556677764 477786 4689999999999888553
No 236
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.80 E-value=0.089 Score=43.09 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=56.3
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhc-CCCCCceEEEE--cCeecCC-CCCccccCCCCCCEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQLED-GRTLADYNIQKESTL 447 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~~~~~~q~Li~--~G~~L~d-~~tl~~~~i~~~~~i 447 (458)
+..+|.||.++|..+.-....++||.+|..-|.... +.+.....|+- -.+.|.| ++||.++++.+..+|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 347899999999999999999999999999999864 34556677764 4788875 689999999986555
No 237
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.63 E-value=0.11 Score=41.26 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=57.8
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE--ecCeecc--cCccccccccCCCCEEEEEE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~--d~~tL~~~~i~~~s~i~l~~ 223 (458)
..+|-|+..+|+.+.-.+..++||.+|...|... +..+..+.|. |-.+.|. .+.||.+.|+.+..+|.|..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 3567788899998888889999999999999965 5556677777 6677785 57899999999988886643
No 238
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.51 E-value=0.077 Score=39.33 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=55.3
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEe---cCeecccCccccccccCC
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~---~g~~L~d~~tL~~~~i~~ 215 (458)
.+++.|.-...+...+.|+|..+.++|--.|.++..+.++...|.. .+..|+-+++|.+|||++
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3455666666677889999999999999999999999999999984 567899999999999987
No 239
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.00 E-value=0.16 Score=40.74 Aligned_cols=61 Identities=31% Similarity=0.408 Sum_probs=44.6
Q ss_pred ceEEEeecCCCcHHHHHHhhhcc----cCCCCCC----eeEEec----CeecCCC--------------CCcccccccCC
Q 012713 315 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIFA----GKQLEDG--------------RTLADYNIQKE 368 (458)
Q Consensus 315 ~~~~l~v~~~~ti~~vK~~I~~~----~~i~~~~----q~L~~~----g~~L~~~--------------~~l~~y~I~~~ 368 (458)
..+++.|..+|||..+|++|.+. .|.|..+ ..|-++ |..|.|. .||++|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56899999999999999999863 4776542 334442 2344441 27899999999
Q ss_pred CeEEEEE
Q 012713 369 STLHLVL 375 (458)
Q Consensus 369 ~~l~l~~ 375 (458)
+++-++.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998875
No 240
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.47 E-value=0.17 Score=41.43 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=54.1
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHh-CCCccCeEEE--ecCeeccc-CccccccccCCCCE
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 218 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~~~i~~~s~ 218 (458)
...|.|+..+|..+.-.+..++||.+|.+.|.... +.+...+.|+ |-.+.++| +.||.+.|+.+...
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 35677888999999999999999999999998863 3555667777 67888864 68999999998543
No 241
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.45 E-value=0.6 Score=33.62 Aligned_cols=67 Identities=25% Similarity=0.363 Sum_probs=50.2
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.|+|+|....++. .+++....||.+|.+.+ ++++.......+|..+..+. -+++||.|.++--..||
T Consensus 4 ~m~i~vNg~~~~~-~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDGKK-ILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTEEE-EEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccCce-eEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 4888887665443 67888889999998866 56677777889999988665 67899999775545554
No 242
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.24 E-value=0.42 Score=35.24 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=50.7
Q ss_pred EEEEeeccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEEE
Q 012713 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 241 i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~ 298 (458)
+.-.++-..++..||..++.+.|++.+.+.+...+..|+++++|.+..++-...+.++
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3444556778899999999999999999999888888999999999999999998876
No 243
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=92.70 E-value=0.94 Score=36.50 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=48.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEEc----Ce-ecCCC-------------CCccccCCC
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIFA----GK-QLEDG-------------RTLADYNIQ 442 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~~----G~-~L~d~-------------~tl~~~~i~ 442 (458)
.+..+.+.|-..|||.++|++|-... + ..+++..|-|. |+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45568888999999999999998764 2 23578888883 33 37653 589999999
Q ss_pred CCCEEEEEE
Q 012713 443 KESTLHLVL 451 (458)
Q Consensus 443 ~~~~i~~~~ 451 (458)
+|+++-+.-
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999997653
No 244
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.53 E-value=0.63 Score=38.05 Aligned_cols=63 Identities=30% Similarity=0.440 Sum_probs=47.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcC--C------CCCceEEEE----cCe-ecCCC-------------CCccccCCCCC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEG--I------PPDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 444 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~--~------~~~~q~Li~----~G~-~L~d~-------------~tl~~~~i~~~ 444 (458)
..+.+.|-..|||.++|++|-+..- . .+++.-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 5688999999999999999998653 2 456667766 244 47664 38999999999
Q ss_pred CEEEEEEEe
Q 012713 445 STLHLVLRL 453 (458)
Q Consensus 445 ~~i~~~~~~ 453 (458)
+++.++-+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999775543
No 245
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.51 E-value=0.54 Score=37.48 Aligned_cols=64 Identities=30% Similarity=0.425 Sum_probs=47.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEEc-C---e-ecCCC-------------CCccccCCCC
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIFA-G---K-QLEDG-------------RTLADYNIQK 443 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~~-G---~-~L~d~-------------~tl~~~~i~~ 443 (458)
...+.+.|-..|||.++|++|-... | ..+++..|-|. | + .|.|. .||+.|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457888999999999999998754 2 23567777772 3 3 36552 4899999999
Q ss_pred CCEEEEEEEe
Q 012713 444 ESTLHLVLRL 453 (458)
Q Consensus 444 ~~~i~~~~~~ 453 (458)
|+++-++-|+
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999776553
No 246
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.11 E-value=1.3 Score=31.83 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=48.9
Q ss_pred ceeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 152 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
.|+|+|.... ....++++...||.+|.+.+ ++++....+..+|.....+. -+++|+.+.++....||
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 4777776443 23456777889999998876 56777777889999886554 68889999887655443
No 247
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=91.54 E-value=0.43 Score=34.86 Aligned_cols=60 Identities=12% Similarity=0.308 Sum_probs=46.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
|+|+|+-.....-.++++++.||.+|- ++.|++++......+|+.+..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 778888775455568999999998875 56789888888888999887665 2358988653
No 248
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.94 E-value=0.44 Score=34.81 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=49.4
Q ss_pred eeeEEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 153 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
|+|.|+..+.....++++++.||++|-+ ..|+|++.-...-||+....+. +.+|+.+.++--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 6788887755556689999999999764 5799999887888999886555 2358888776544444
No 249
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.67 E-value=0.67 Score=34.55 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=41.8
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G 427 (458)
+.+|+|.|... -++.++|.++.+..+|..+|+++.+++++...|-|.-
T Consensus 3 ~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 3 HMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 34577888776 5788999999999999999999999999988999974
No 250
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=90.44 E-value=1.8 Score=31.90 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=50.9
Q ss_pred EeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEE
Q 012713 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 166 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~ 224 (458)
.-.++-..++..||..++.+.|++-+...+...+..|+++++|.+.+++-...+.+.+.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 33456677889999999999999999999999999999999999999998887776653
No 251
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.00 E-value=0.92 Score=41.07 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=51.4
Q ss_pred EEeeccCCCcHHHHHHHHHHHhCCCcc-CeEEEe-c----Ceeccc-CccccccccCCCCEEEEEEEecC
Q 012713 165 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~~-~----g~~L~d-~~tL~~~~i~~~s~i~l~~~~~~ 227 (458)
++..++..+|+.+|++.+...+++|++ +.||.. . ...|+| +.+|.++++.++..|.+-.+...
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~d 223 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNED 223 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 557779999999999999999999997 688883 2 345655 68999999999999987776443
No 252
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=89.89 E-value=0.75 Score=41.23 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=51.1
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCcc-CeEEE--ec---Ceeccc-CccccccccCCCCEEEEEEEec
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA---GKQLED-GRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~--~~---g~~L~d-~~tL~~~~i~~~s~i~l~~~~~ 226 (458)
..++.++..+|+.+|++.+...+++|++ +.||. +. ...|+| +.||.++++.++..|.+-++..
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 3567789999999999999999999997 68877 22 234555 5799999999999998777644
No 253
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.78 E-value=2.8 Score=32.14 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=49.8
Q ss_pred CceeEEEEcCC------C-cEEEEEecCCCcHHHHHHHHHhhcC-C----------CCCceEEEEcCeecCCCCCccccC
Q 012713 379 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 440 (458)
Q Consensus 379 ~~~~i~vk~~~------g-~~~~i~v~~~~tV~~lK~~i~~~~~-~----------~~~~q~Li~~G~~L~d~~tl~~~~ 440 (458)
.+|+|+|+... | ....+++....||.+|.+.+...+. + ......+..+|+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 56888888762 3 3567888888999999999988752 1 1234567778887753 567
Q ss_pred CCCCCEEEEEEEecCC
Q 012713 441 IQKESTLHLVLRLRGG 456 (458)
Q Consensus 441 i~~~~~i~~~~~~~~g 456 (458)
+++||.|.++--..||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8999999765444444
No 254
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.64 E-value=2.9 Score=33.53 Aligned_cols=60 Identities=30% Similarity=0.391 Sum_probs=43.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhc----CC----CCCceEEEEc----CeecCCC--------------CCccccCCCCC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKE----GI----PPDQQRLIFA----GKQLEDG--------------RTLADYNIQKE 444 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~----~~----~~~~q~Li~~----G~~L~d~--------------~tl~~~~i~~~ 444 (458)
..+.+.|-..|||.++|++|-... |. .+++..|-|. |..|.|. .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 467888999999999999987642 43 2566666662 2344331 47889999999
Q ss_pred CEEEEE
Q 012713 445 STLHLV 450 (458)
Q Consensus 445 ~~i~~~ 450 (458)
+++-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999654
No 255
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.96 E-value=1 Score=33.51 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=35.2
Q ss_pred cEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCe
Q 012713 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~ 200 (458)
-++.+.|+++.+..+|+++|.++.++|++...|.|...
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 68999999999999999999999999999999998653
No 256
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=87.89 E-value=2.9 Score=32.05 Aligned_cols=73 Identities=12% Similarity=0.294 Sum_probs=48.5
Q ss_pred ecceeeEEEecc------C-cEEEeeccCCCcHHHHHHHHHHHhC-C----------CccCeEEEecCeecccCcccccc
Q 012713 150 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY 211 (458)
Q Consensus 150 ~~~m~i~v~~~~------g-~~~~~~v~~~~tV~~LK~~I~~~~g-i----------p~~~q~L~~~g~~L~d~~tL~~~ 211 (458)
.+.|.|.|+.+. | ....++++...||.+|.+.+..... + ......+.-||+.... +.
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 356778887643 3 4567888888999999999977641 1 1233556677777652 66
Q ss_pred ccCCCCEEEEEEEecC
Q 012713 212 NIQKESTLHLVLRLRG 227 (458)
Q Consensus 212 ~i~~~s~i~l~~~~~~ 227 (458)
-+++|+.|.++....|
T Consensus 82 ~L~dGDeV~i~ppv~G 97 (98)
T 1vjk_A 82 ELKDGDVVGVFPPVSG 97 (98)
T ss_dssp BCCTTCEEEEESCC--
T ss_pred CCCCCCEEEEECCCCC
Confidence 7899999987755444
No 257
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=87.81 E-value=1.5 Score=44.79 Aligned_cols=65 Identities=29% Similarity=0.451 Sum_probs=47.1
Q ss_pred ceEEEeecCCCcHHHHHHhhhc--ccCCCCC------CeeEEec----Ce-ecCCCC-------------CcccccccCC
Q 012713 315 KTITLEVESSDTIDNVKAKIQD--KEGIPPD------QQRLIFA----GK-QLEDGR-------------TLADYNIQKE 368 (458)
Q Consensus 315 ~~~~l~v~~~~ti~~vK~~I~~--~~~i~~~------~q~L~~~----g~-~L~~~~-------------~l~~y~I~~~ 368 (458)
..+.+.|..+|||..+|++|.+ ..|.|.. ...|-+. |+ .|.|.. ||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 5689999999999999999986 2455543 2335542 33 466622 8999999999
Q ss_pred CeEEEEEeecC
Q 012713 369 STLHLVLRLRG 379 (458)
Q Consensus 369 ~~l~l~~~~~~ 379 (458)
+++-|+++...
T Consensus 354 a~v~L~p~~~~ 364 (644)
T 3hm6_X 354 ATVALVPCLTK 364 (644)
T ss_dssp CEEEEEEC---
T ss_pred cEEEEEecccc
Confidence 99999987544
No 258
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.12 E-value=2 Score=43.97 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=46.8
Q ss_pred CceEEEeecCCCcHHHHHHhhhcc--cCCCC------CCeeEEec----Ce-ecCCC-------------CCcccccccC
Q 012713 314 GKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GK-QLEDG-------------RTLADYNIQK 367 (458)
Q Consensus 314 g~~~~l~v~~~~ti~~vK~~I~~~--~~i~~------~~q~L~~~----g~-~L~~~-------------~~l~~y~I~~ 367 (458)
...+.+.|..+|||..+|++|.+. .|.|. ....|.+. |+ .|.|. -||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 467899999999999999999873 44543 23445542 32 45552 2899999999
Q ss_pred CCeEEEEEeecC
Q 012713 368 ESTLHLVLRLRG 379 (458)
Q Consensus 368 ~~~l~l~~~~~~ 379 (458)
|+++-|+++...
T Consensus 326 ga~v~L~p~~~~ 337 (627)
T 3ig3_A 326 GSLVALVPKQVS 337 (627)
T ss_dssp TCEEEEEEC---
T ss_pred CceEEEEecccc
Confidence 999999987643
No 259
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=86.28 E-value=2.5 Score=31.80 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=45.1
Q ss_pred cceeeEEEeccCcEEEeeccCC-CcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 151 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 151 ~~m~i~v~~~~g~~~~~~v~~~-~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
..|+|+|. |+. ++++.. .||.+|.+.+ ++++....+..||+.+..+ ...+.-+++|+.|.++....||
T Consensus 19 ~~M~I~vN---Ge~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQLN---GKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEET---TEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEEC---CEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 45666554 554 455666 8999998876 5777777778888887532 3345678999999988765543
No 260
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=85.77 E-value=2.3 Score=30.69 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=39.5
Q ss_pred EeeccCCCcHHHHHHHHHHHhCCCc--cCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 166 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 166 ~~~v~~~~tV~~LK~~I~~~~gip~--~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
.+++ ...||++|.+.+..+.++.. ..-.+.-||+...+ .+.-+++|+.+.++.+..||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3556 67899999999986543322 34556667776432 35668899999888766554
No 261
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=85.25 E-value=2.7 Score=30.31 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=44.9
Q ss_pred eeEEEEcCCC-cEEEEEecCCCcHHHHHHHHHhhcCCCC--CceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 381 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g-~~~~i~v~~~~tV~~lK~~i~~~~~~~~--~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
|.|+|+.... +.-.+++ ...||.+|.+.+....++.. ....+..+|+...+ .+.-+++||.|.++--..||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 4455554421 1023566 67899999999987644322 45566678887543 34568999999876555555
No 262
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=83.49 E-value=2.5 Score=31.80 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=45.7
Q ss_pred CceeEEEEcCCCcEEEEEecCC-CcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 379 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~-~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
..|+|+| +|+. ++++.. .||.+|.+.+ ++++....+..+|+.+... ...+.-+++||.|.++--..||
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 4566654 5664 566776 8999998766 5667777788899988643 3345578999999776555554
No 263
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=83.05 E-value=5.3 Score=37.20 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=54.3
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEE---cCe--ecCCCCCccccCCCCCCEEEEEEEe
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~---~G~--~L~d~~tl~~~~i~~~~~i~~~~~~ 453 (458)
+|.+.|..++| ++.+.+++.+|+.++-+.++++.|+.. +..-|.| +|. -|+..+.+.+.+++.+....+..|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 46788899998 678999999999999999999999854 3345555 233 3677778888766555555555554
No 264
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.80 E-value=6.3 Score=37.11 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=56.5
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEE--cCe--ecCCCCCccccCCCCCCEEEEEEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~--~G~--~L~d~~tl~~~~i~~~~~i~~~~~ 452 (458)
+.++.+.|..++| ++.+.+++.+|+.+|-+.|+.+.|+.. +..-|.| +|. -|+.++.+.+...+.+....+..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5678899999999 788999999999999999999999854 4444555 343 377788888876655555555555
Q ss_pred e
Q 012713 453 L 453 (458)
Q Consensus 453 ~ 453 (458)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 265
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.64 E-value=1.2 Score=36.33 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=34.3
Q ss_pred cEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEecee
Q 012713 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (458)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~ 49 (458)
+..++.|..+.|+.++|+.|.+..|+|+++|+|+.....
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecC
Confidence 345789999999999999999999999999999986443
No 266
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.64 E-value=6.4 Score=36.62 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=53.8
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeC---Cc--ccCCCCcccccccCCCCeEEEEEe
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLVLR 300 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~---g~--~l~d~~tL~~~~i~~~~ti~l~~~ 300 (458)
+.+.|..++| ++.+.++++.|+.+|-..++++.|+.... +-|.+. |. -|+.++++.+.+++.+....+.++
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4556677777 78899999999999999999999988766 456552 32 267788888887777766665554
No 267
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=79.48 E-value=9.7 Score=28.59 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=40.2
Q ss_pred EeeccCCCcHHHHHHHHHHHhC-C-----C-------ccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 166 TLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 166 ~~~v~~~~tV~~LK~~I~~~~g-i-----p-------~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
.++. ...||++|.+.+..+.. + . .....+.-||+....... .+.-+++|+.|.++.+..||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 4553 56899999999987652 0 0 113456677776654222 24568999999888776654
No 268
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=79.35 E-value=8.6 Score=39.32 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=47.4
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEEc----Ce-ecCCC-------------CCccccCCCC
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIFA----GK-QLEDG-------------RTLADYNIQK 443 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~~----G~-~L~d~-------------~tl~~~~i~~ 443 (458)
...+.+.|-..|||.++|++|-... | ..+++..|-|. |+ .|.|. .||+.|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4567889999999999999998754 2 24577777762 33 45553 4899999999
Q ss_pred CCEEEEEEEe
Q 012713 444 ESTLHLVLRL 453 (458)
Q Consensus 444 ~~~i~~~~~~ 453 (458)
|+++-++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999776554
No 269
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=79.08 E-value=8 Score=29.13 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=38.4
Q ss_pred EEEEc-cCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeCCcc
Q 012713 231 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ 277 (458)
Q Consensus 231 i~v~~-~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~g~~ 277 (458)
+.||. .+|..+.+.+.++-+.++|.+++.++.+++..+ +.+.|...+
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 45554 567888999999999999999999999998766 777786653
No 270
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=78.48 E-value=9.5 Score=35.85 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=54.7
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEe--CCc--ccCCCCcccccccCCCCeEEEEEe
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 300 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~--~g~--~l~d~~tL~~~~i~~~~ti~l~~~ 300 (458)
+.+.|..++| ++.++++++.|+.+|-..|+++.||.... +-|.| .|. -|+.++++.+..+..+....+.++
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5566777888 88999999999999999999999988765 45655 232 277788898887777666655544
No 271
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=78.27 E-value=1.8 Score=35.30 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.8
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc
Q 012713 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (458)
Q Consensus 393 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~ 426 (458)
..+.|..+.|+.+|++.+++.+|+|++.|||-.-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 3579999999999999999999999999998654
No 272
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=78.05 E-value=8.2 Score=28.72 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.6
Q ss_pred cEEEeeccCCCcHHHHHHHHHHHhC-C-----C-----ccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~g-i-----p-----~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
....++++...||.+|.+.+..... + . .....+.-||+.... ++-+++|+.|.++.+..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5677888888999999999987652 1 0 012466677777654 5668889999888766554
No 273
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=78.01 E-value=9 Score=28.83 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=36.0
Q ss_pred EEEe-ccCcEEEeeccCCCcHHHHHHHHHHHhCCCccC-eEEEecCe
Q 012713 156 FVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 200 (458)
Q Consensus 156 ~v~~-~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~~~g~ 200 (458)
.||. .+|..+.+.++++.+..+|.+++++.++++.++ ..+.|...
T Consensus 8 kvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 8 RVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 4443 467889999999999999999999999988655 66667654
No 274
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=77.40 E-value=2.5 Score=30.65 Aligned_cols=62 Identities=11% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.+|+.+ ++ ...||.+|-+ ..++++...-...+|..+.-+ ..++.-+++||.|-++--..||+
T Consensus 5 vNG~~~--e~-~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 5 INGEQR--EV-QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp ETTEEE--CC-CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCC
T ss_pred ECCEEE--Ec-CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCc
Confidence 356654 45 6689998865 457778888888999988643 34456789999998876677774
No 275
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.02 E-value=10 Score=38.86 Aligned_cols=62 Identities=29% Similarity=0.436 Sum_probs=46.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEEc----Ce-ecCCC-------------CCccccCCCCC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 444 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~~----G~-~L~d~-------------~tl~~~~i~~~ 444 (458)
..+.+.|-..|||.++|++|-... | ..+++..|-|. |+ .|.|. .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457888999999999999998643 2 23567777772 33 46653 48999999999
Q ss_pred CEEEEEEE
Q 012713 445 STLHLVLR 452 (458)
Q Consensus 445 ~~i~~~~~ 452 (458)
+++-++-+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99976544
No 276
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=74.91 E-value=4.4 Score=28.46 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=41.8
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+ +++...||.+|.+.+ ++++....+..+|+..... ...+.-+++|+.+.++....||
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 45544 556778999998876 5667777777888877432 1234568889999887655443
No 277
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=74.58 E-value=16 Score=27.33 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=46.3
Q ss_pred eeEEEEcC------CCcEEEEEecCCCcHHHHHHHHHhhcCC------C---C----CceEEEEcCeecCCCCCccccCC
Q 012713 381 MQIFVKTL------TGKTITLEVESSDTIDNVKAKIQDKEGI------P---P----DQQRLIFAGKQLEDGRTLADYNI 441 (458)
Q Consensus 381 ~~i~vk~~------~g~~~~i~v~~~~tV~~lK~~i~~~~~~------~---~----~~q~Li~~G~~L~d~~tl~~~~i 441 (458)
|+|+|+.. .|..-.+++ +..||.+|.+.+.+++.- . . ....+..+|+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 45556543 232224664 567999999999988631 1 1 135666788877643222 4568
Q ss_pred CCCCEEEEEEEecCC
Q 012713 442 QKESTLHLVLRLRGG 456 (458)
Q Consensus 442 ~~~~~i~~~~~~~~g 456 (458)
++||.|.++--..||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 999999877666665
No 278
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.53 E-value=13 Score=38.41 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=56.1
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEc---C--eecCCCCCccccCCCCCCEEEEEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~---G--~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
+.++.+.|..++| ++.+.|++.+|+.+|-..|+...|+.. ...-|.|. | .-|+..+++.+.+++.+....+..
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 3468889999998 678999999999999999999999844 44556653 2 246667788887666666655555
Q ss_pred Ee
Q 012713 452 RL 453 (458)
Q Consensus 452 ~~ 453 (458)
|.
T Consensus 81 Rv 82 (575)
T 2i1j_A 81 RA 82 (575)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 279
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=74.18 E-value=4.4 Score=28.46 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+. +++....||.+|.+.+ ++++....+..+|+.+... ...+.-+++||.|.++--..||
T Consensus 5 vNg~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 5 FNDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp ESSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred ECCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 35664 5667888999998876 4566777788888887632 2224467899999776545554
No 280
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=73.51 E-value=15 Score=28.99 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=46.2
Q ss_pred CceeEEEEcCC------C--cEEEEEecC---CCcHHHHHHHHHhhcCCCCCceEEEEc-Ce------ecCCCCC---c-
Q 012713 379 GGMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRT---L- 436 (458)
Q Consensus 379 ~~~~i~vk~~~------g--~~~~i~v~~---~~tV~~lK~~i~~~~~~~~~~q~Li~~-G~------~L~d~~t---l- 436 (458)
+.|+|+|+.+. | +..+++++. ..||.+|.+.+++++. ....+|+.. |+ +|-|+.- +
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL--KERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC--CSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc--chhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 44788887763 3 355688873 3699999999998862 111111111 11 1222221 1
Q ss_pred -cccCCCCCCEEEEEEEecCCC
Q 012713 437 -ADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 437 -~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.++-+++||.|.++-...||+
T Consensus 88 gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCCC
Confidence 346789999998876677763
No 281
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=73.17 E-value=13 Score=38.42 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=54.2
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeCC---c--ccCCCCcccccccCCCCeEEEEEe
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---K--QLEDGRTLADYNIQKESTLHLVLR 300 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~g---~--~l~d~~tL~~~~i~~~~ti~l~~~ 300 (458)
+.+.|..++| ++.+.++++.|+.+|-..|+.+.||+-.. +-|.|.. . -|+.++++.+.++..+....|.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 4566777887 78899999999999999999999987665 5566632 1 366778888887777776666554
No 282
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=73.06 E-value=29 Score=26.45 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=55.0
Q ss_pred eeEEEEcCCC---cEEEEEecCCCcHHHHHHHHHhhcCCCC--CceEEEEcC---eecCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g---~~~~i~v~~~~tV~~lK~~i~~~~~~~~--~~q~Li~~G---~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
++|+|...+. ...+++|..+..|+-+.-++-++.+++. .+--|-+.- ..|+-..||..|||+.++.+++.-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 5788888654 5688999999999999999998877543 344444432 367888999999999999997653
No 283
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=72.98 E-value=3 Score=30.59 Aligned_cols=63 Identities=14% Similarity=0.333 Sum_probs=45.9
Q ss_pred CCCcEEEEEec--CCCcHHHHHHHHHhhcCCC-CCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 388 LTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 388 ~~g~~~~i~v~--~~~tV~~lK~~i~~~~~~~-~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
.+|+. .+++ ...||.+|-+.+ +++ +...-.-.+|..+.-+ ..++.-+++||.|.++--..||+
T Consensus 5 vNGe~--~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 5 VNGKP--STVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp ETTEE--EECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred ECCEE--EEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 35665 4566 678999987644 666 7777788999998744 45566789999998776677774
No 284
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=72.54 E-value=15 Score=27.25 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=43.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcC-C-----CC-----CceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~~-~-----~~-----~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
....+++....||.+|.+.+...+. + .. ....+..+|+.... +.-+++||.|.++=-..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567888888999999999988763 1 10 12567778888764 4568899999776555554
No 285
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=72.49 E-value=12 Score=25.92 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=41.9
Q ss_pred ccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
.+|+.+. + ...||.+|.+.+ ++++....+..+|+....+ ...+.-+++|+.+.++....||
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 3566554 4 568999998876 5667777777888877532 2344568899999888765543
No 286
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=72.38 E-value=6 Score=27.53 Aligned_cols=61 Identities=15% Similarity=0.328 Sum_probs=41.9
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+.+ ++ ...||.+|.+.+ ++++.......+|+.+..+ .-.+.-+++||.|.++--..||
T Consensus 4 vNg~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 4 LNGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ETTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred ECCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 467654 45 678999998876 4556777788888887643 2234468999999776555554
No 287
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=72.09 E-value=8.1 Score=28.07 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.3
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhC-----CCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
...++ ....||.+|.+.+..... ++.....+..||+.... +.-+++|+.|.++....||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45566 667899999999875431 23334567788877642 5578899999887655544
No 288
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=71.82 E-value=7.7 Score=28.20 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcC-----CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~-----~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
...++ ....||.+|.+.+..... ++.....+..+|+.... +.-+++||.|.++--..||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44555 567899999999986642 23344567788887753 4478899999876545554
No 289
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.67 E-value=8.6 Score=27.64 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=41.7
Q ss_pred cEEEeeccCCCcHHHHHHHHHHHhCCCccCe--EEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q--~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
....++++...||.+|.+.+..... ..... .+..||+.... +.-+++|+.|.++....||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECCCCCC
Confidence 3567777788899999999877641 01223 67788887764 3578899999887655443
No 290
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=68.49 E-value=9.1 Score=27.55 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=43.1
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+... + ...||++|-+. .++++...-+..||..+.. ...++.-+++|+.|.++....||
T Consensus 6 NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCC
Confidence 465544 4 56899998764 5788888888899988742 23445678899999988766555
No 291
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=68.13 E-value=2.3 Score=33.53 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=46.1
Q ss_pred CceeEEEEcCC------CcEEEEEecC----CCcHHHHHHHHHhhcCCCCCceEEE-EcC--e------ecCCCCCc---
Q 012713 379 GGMQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL--- 436 (458)
Q Consensus 379 ~~~~i~vk~~~------g~~~~i~v~~----~~tV~~lK~~i~~~~~~~~~~q~Li-~~G--~------~L~d~~tl--- 436 (458)
..|+|+|+... |+...++++. ..||++|-+.+++++.- ..-+|+ -+| . +|-|+...
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~--~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVK--ERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCC--SCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccc--cchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 45777887753 3545677773 25999999999988631 122222 123 1 23344433
Q ss_pred --cccCCCCCCEEEEEEEecCC
Q 012713 437 --ADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 437 --~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|-+++||.|.++-...||
T Consensus 81 ~gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCCC
T ss_pred CCcccCCCCcCEEEEeCCCccc
Confidence 34679999999776656655
No 292
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=66.23 E-value=20 Score=33.40 Aligned_cols=74 Identities=9% Similarity=-0.011 Sum_probs=52.7
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEc---C--eecCCCCCccccCCCCCCEEEEEE
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~---G--~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
...+.+.|..++|....+.|++..|+.+|-..++++.|+.. +..-|.|. | .-|+..+.+.+........+++.+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 34689999999999999999999999999999999999754 33555553 2 246777777776433344454433
No 293
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=65.49 E-value=8.5 Score=27.66 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=41.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCce--EEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q--~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
...+++....||.+|.+.+...+. ..... .+..+|+....+ .-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 456677778899999999887742 11233 677889888753 468899999765444444
No 294
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=65.04 E-value=15 Score=25.86 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=41.1
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
|.+.|..++|+. .+++.+.|+.++-+.+....+ ....-...+|+..+-+ +-+++|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 677888888886 667788999999887754321 1222234578766653 4556788886653
No 295
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=64.74 E-value=6.4 Score=28.80 Aligned_cols=63 Identities=14% Similarity=0.307 Sum_probs=43.1
Q ss_pred cCcEEEeeccCCCcHHHHHHHHHHHhCCC-ccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 161 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip-~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
+|+...+..+...||++|-+.+ +++ +...-+..||..+.-+ ..+++-+++|+.|.++....||
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 4665443321678999987654 677 7777788899887432 3455678899999888666555
No 296
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=64.57 E-value=17 Score=27.79 Aligned_cols=58 Identities=12% Similarity=0.253 Sum_probs=40.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCC-----------ceEEEEcC-eecC------CCCCccccCCCCCCEEEEE
Q 012713 393 ITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLE------DGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 393 ~~i~v~~~~tV~~lK~~i~~~~~~~~~-----------~q~Li~~G-~~L~------d~~tl~~~~i~~~~~i~~~ 450 (458)
..++|++++|..+|.+.+.+.-.+... ...|+..+ ..|+ -+++|.+.++.+|+.|++.
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 468999999999999999995443221 23333333 1232 2377999999999999763
No 297
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=63.52 E-value=20 Score=27.27 Aligned_cols=70 Identities=26% Similarity=0.296 Sum_probs=54.8
Q ss_pred eEEEEcCCC---cEEEEEecCCccHHHHHHHhhcccCCCCCc--eEEEEece---eccCCCCccccccccccccceeE
Q 012713 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAGK---QLEDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 2 ~i~~~~~~g---~~~~~~v~~~dtv~~~K~~i~~~~gip~~~--q~l~~~g~---~L~d~~tl~~y~i~~~sti~l~~ 71 (458)
.|+|..++. ...+++|...--|..+..|+.++..++-+- --|..-.+ .|.-..||..|+|+..+.+++..
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 589999764 678899998899999999999888876543 34444333 36667899999999999988753
No 298
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=63.15 E-value=46 Score=25.12 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=38.2
Q ss_pred cEEEeecc--CCCcHHHHHHHHHHHhCCC-cc------------CeEEEecCeecccCccc--cccccCCCCEEEEEEEe
Q 012713 163 KTITLEVE--SSDTIDNVKAKIQDKEGIP-PD------------QQRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRL 225 (458)
Q Consensus 163 ~~~~~~v~--~~~tV~~LK~~I~~~~gip-~~------------~q~L~~~g~~L~d~~tL--~~~~i~~~s~i~l~~~~ 225 (458)
+...++++ ...||++|.+.+.++..-. +. ...+.-||+..+ -+ .++-+++|+++.++.+.
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEGEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGTGGGCBCCTTCEEEEEECT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccCCCCcCcCCCCEEEEECCC
Confidence 45667776 6789999999998876311 10 011223443211 11 35679999999887665
Q ss_pred cCC
Q 012713 226 RGG 228 (458)
Q Consensus 226 ~~~ 228 (458)
.||
T Consensus 97 ~GG 99 (99)
T 2qjl_A 97 HGG 99 (99)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 299
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=61.23 E-value=32 Score=27.02 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=43.5
Q ss_pred eeeEEEecc------C--cEEEeeccC---CCcHHHHHHHHHHHhCCCccCeEEEec-Ce------ec-cc-Cc-cc--c
Q 012713 153 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QL-ED-GR-TL--A 209 (458)
Q Consensus 153 m~i~v~~~~------g--~~~~~~v~~---~~tV~~LK~~I~~~~gip~~~q~L~~~-g~------~L-~d-~~-tL--~ 209 (458)
|.|.|+.+. | +.+.++++. ..||.+|.+.+.+++ |....+|+.. |+ .+ ++ ++ -| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 556665432 3 356788883 369999999998775 1112222211 11 11 11 11 22 3
Q ss_pred ccccCCCCEEEEEEEecCC
Q 012713 210 DYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 210 ~~~i~~~s~i~l~~~~~~~ 228 (458)
++-+++|+.|.++....||
T Consensus 90 dt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TCBCCSSEEEEEEECSCCC
T ss_pred CcCCCCCCEEEEeCCCCCC
Confidence 5789999999888777777
No 300
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=60.68 E-value=26 Score=33.72 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCcEEEEEecCCccHHHHHHHhhcccCCCCCceEEEEecee
Q 012713 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~ 49 (458)
..-....+.+.+..|+.++++++++..++++..|.|++.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 345667789999999999999999999999999999999844
No 301
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=60.61 E-value=21 Score=33.26 Aligned_cols=70 Identities=9% Similarity=0.031 Sum_probs=50.7
Q ss_pred CeEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCc-eEEEeCC---c--ccCCCCcccccccCCCCeEEE
Q 012713 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---K--QLEDGRTLADYNIQKESTLHL 297 (458)
Q Consensus 228 ~~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~-q~L~~~g---~--~l~d~~tL~~~~i~~~~ti~l 297 (458)
.+.+.|..++|....+++++..|+.+|-..++++.||.... +-|.+.. . -|+.++++.+.......++++
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 46677888999999999999999999999999999988766 5566532 1 266677777664333334443
No 302
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=58.14 E-value=44 Score=24.55 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=48.6
Q ss_pred EEEecCCCcHHHHHHHHHhhc-C----CCCCceEEEEcCee--cCCCCCccccCCCCCCEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKE-G----IPPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~-~----~~~~~q~Li~~G~~--L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
-+.|+..+|+.++-++++... | -.+.-.+..++|.. |.++.|+++-|+++-+.|.+..
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 477999999999999988864 4 23347788899998 9999999999999999998754
No 303
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=57.25 E-value=32 Score=25.24 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=39.2
Q ss_pred eeccCCCcHHHHHHHHHHHhC------C-----CccCeEEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 167 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~g------i-----p~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
++++...||.+|.+.+..+.. + ......+..||+..... .-.+.-+++|+.|.++....||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 345556899999999977641 1 11345677788766422 1234568999999887655443
No 304
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=56.92 E-value=3.5 Score=30.04 Aligned_cols=53 Identities=9% Similarity=0.224 Sum_probs=38.0
Q ss_pred EeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecC
Q 012713 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 166 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~ 227 (458)
.++++...||.+|.+.+ +++.....+..||+....+ .-+++|+.|.++....|
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~G 76 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSG 76 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEccccc
Confidence 45667788999998765 4666666777888887654 56788888876654443
No 305
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=55.85 E-value=8 Score=30.40 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=38.3
Q ss_pred CcEEEeeccC----CCcHHHHHHHHHHHhCCCccCeEEE-ecC--e------ecccCcc---c--cccccCCCCEEEEEE
Q 012713 162 GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L--ADYNIQKESTLHLVL 223 (458)
Q Consensus 162 g~~~~~~v~~----~~tV~~LK~~I~~~~gip~~~q~L~-~~g--~------~L~d~~t---L--~~~~i~~~s~i~l~~ 223 (458)
|+...++++. ..||.+|-..+.+.. |..+-.|+ -+| . .|-+++. + .+|-+++|+.|.++.
T Consensus 20 g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 20 AKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp TSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred CCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 3445677773 249999998888765 22222222 112 1 1222222 2 357899999998887
Q ss_pred EecCCe
Q 012713 224 RLRGGM 229 (458)
Q Consensus 224 ~~~~~~ 229 (458)
+..||.
T Consensus 98 tlhg~~ 103 (110)
T 2k9x_A 98 TLHGGL 103 (110)
T ss_dssp CCCCC-
T ss_pred CCcccc
Confidence 777765
No 306
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=54.70 E-value=48 Score=24.51 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=30.8
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCC
Q 012713 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 112 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi 112 (458)
+.|.|.+ ..++..|.+.|+++.+..+|+.+|.++..+
T Consensus 11 ~~~KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455555 356778999999999999999999999888
No 307
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=53.70 E-value=63 Score=23.69 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=47.7
Q ss_pred EEEecCCCcHHHHHHHHHhhc-C--C---CCCceEEEEcC--eecCCCCCccccCCCCCCEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~-~--~---~~~~q~Li~~G--~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
-+.|+..+|+.++-++++... | + |..-.+..++| +.|..+.|+++-+|++-+.|.+..
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 367999999999999998754 3 2 22356777999 999999999999999999988764
No 308
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.09 E-value=30 Score=26.56 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=44.7
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-------cCeecCCCCCcccc
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADY 439 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-------~G~~L~d~~tl~~~ 439 (458)
.+..|.|-..+|..-.+.|++++|+.++-+.+..+.+.....---++ .-+.++|...+-+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 44567777889999999999999999999999999886433221112 24668888765554
No 309
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=53.03 E-value=48 Score=25.08 Aligned_cols=73 Identities=14% Similarity=0.294 Sum_probs=44.2
Q ss_pred eeEEEEcCC------CcEEEEEecCCCcHHHHHHHHHhhcC-CCC-----C----ce-------EEEEcCeecCCCCCcc
Q 012713 381 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-IPP-----D----QQ-------RLIFAGKQLEDGRTLA 437 (458)
Q Consensus 381 ~~i~vk~~~------g~~~~i~v~~~~tV~~lK~~i~~~~~-~~~-----~----~q-------~Li~~G~~L~d~~tl~ 437 (458)
|+|+|+... |.. .++++ ..||.+|.+.+..++. +.. . .. .+..+|+....... .
T Consensus 4 m~v~V~~fa~lr~~~g~~-~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~-~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTP-ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG-L 80 (99)
T ss_dssp CEEEEEECTHHHHHHSSS-EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-T
T ss_pred eEEEEEEeHHHHHHhCCC-eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-C
Confidence 667777652 321 23444 6899999999988752 111 1 12 56778876642221 2
Q ss_pred ccCCCCCCEEEEEEEecCC
Q 012713 438 DYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 438 ~~~i~~~~~i~~~~~~~~g 456 (458)
+.-+++||.|.++--..||
T Consensus 81 ~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 81 ETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCEEEEECCCCCC
Confidence 3468999999776545554
No 310
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=52.73 E-value=43 Score=32.09 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=39.6
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC-eecCCCC-Ccccc
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGR-TLADY 439 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G-~~L~d~~-tl~~~ 439 (458)
-....+.+.+..|+.++++.+++..+++++.|.|++.+ ...-+.. .-+.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~ 372 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 372 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSS
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccC
Confidence 34557889999999999999999999999999999998 4443443 34444
No 311
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.23 E-value=42 Score=24.58 Aligned_cols=62 Identities=13% Similarity=0.276 Sum_probs=40.8
Q ss_pred EEEecCCCcHHHHHHHHHhhcC------C--C---CCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012713 394 TLEVESSDTIDNVKAKIQDKEG------I--P---PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~------~--~---~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g 456 (458)
.++++...||.+|.+.+..+.. + + .....+..+|+......- .+.-+++||.|.++--..||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999988752 1 0 134567778887753211 34468999999776545554
No 312
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=51.83 E-value=30 Score=27.67 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=38.0
Q ss_pred EEEecC----CCcHHHHHHHHHhhcCCCC-------CceEEEEcCe-ecCCCCCccccCCCCCCEEEEE
Q 012713 394 TLEVES----SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGK-QLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 394 ~i~v~~----~~tV~~lK~~i~~~~~~~~-------~~q~Li~~G~-~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
.+.|++ ..|..+|-+.+..++|+.. .+++|+|.=- .=.-+++|++.|+++|+++.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 466664 4589998888888888753 2344444311 1112379999999999999653
No 313
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=51.45 E-value=32 Score=30.33 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=78.3
Q ss_pred EEeeccCCCcHHHHHHHHHHHhCCCccCeEEEecCeecccCc-ccc-ccccCCCCEEEEEEEecCCeEEEEEccCCceEE
Q 012713 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLA-DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 242 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~-tL~-~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~i~ 242 (458)
....|.+++|+.. |+.++|+++.+.. --+-..|.... .|. ...|..|..|.+...... .. ....+....
T Consensus 10 ~~Y~V~~GDTL~~----IA~~~~vsv~~~~-~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~---~~-~~~~~~~~~ 80 (212)
T 4eby_A 10 ASYYLENGTTLSV----INQNLNSSIAPYD-QINFDPILRYNSNIKDKDRIQMGSRVLVPFPCEC---QP-GDFLGHNFS 80 (212)
T ss_dssp EEEECCTTCCHHH----HHHHTCCSSSCCC-SSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEE---ET-TTEEEEEEE
T ss_pred EEEEeCCCCCHHH----HHHHHCCCchhcc-ccCHHHHHHhccCCCCcCccCCCCEEEEeccccc---cC-CccccCceE
Confidence 3567888999885 6778888872100 00001121112 342 346888888876543210 00 001124577
Q ss_pred EEeeccchHHHHHHHHhhhhC--CCCCceEEEeCCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEccCCceEEEe
Q 012713 243 LEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 320 (458)
Q Consensus 243 ~~v~~~dtV~~LK~~i~~~~g--ip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~ 320 (458)
+.|+++||...+-. .+++ +++.. | +.-+. +....|..|.+|.+-.....+-. .+....+...+..
T Consensus 81 Y~V~~GDTL~~IA~---~~y~~lvt~~~--L------~~~N~-~~~~~l~~Gq~L~IP~~~~~~~~-~~~~~~~~~~~Y~ 147 (212)
T 4eby_A 81 YSVRQEDTYERVAI---SNYANLTTMES--L------QARNP-FPATNIPLSATLNVLVNCSCGDE-SVSKDFGLFVTYP 147 (212)
T ss_dssp EECCTTCCHHHHHH---TTTTTSSCHHH--H------HHHCC-SCTTCCCTTCEEEEEEECCCCCT-TTCSSCCCEEEEE
T ss_pred EEecCCCcHHHHHH---HhcCCCCCHHH--H------HHhcC-CCcccCCCCCEEEEcCCCcCCCc-ccccCCCCeEEEE
Confidence 89999999887531 3444 44331 1 11111 44457899998887654321100 0001123457899
Q ss_pred ecCCCcHHHHHH
Q 012713 321 VESSDTIDNVKA 332 (458)
Q Consensus 321 v~~~~ti~~vK~ 332 (458)
|.++||...|-+
T Consensus 148 V~~GDTL~~IA~ 159 (212)
T 4eby_A 148 LRPEDSLSSIAR 159 (212)
T ss_dssp CCTTCCHHHHHH
T ss_pred ECCCCcHHHHHH
Confidence 999999998843
No 314
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=51.13 E-value=82 Score=24.26 Aligned_cols=69 Identities=9% Similarity=0.198 Sum_probs=46.9
Q ss_pred EEEeccCcEEEeeccCCCcHHHHHHHHHHHhCCCccCeEEE---ecCeec--ccCccccccccCCCCEEEEEEE
Q 012713 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQL--EDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 156 ~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~---~~g~~L--~d~~tL~~~~i~~~s~i~l~~~ 224 (458)
.|-..+....++.++.+.|+.+++..+.++.+...+.+.|. ++|... +++..--.-.+.....|++..+
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 34445666788889999999999999999999887788877 677654 3333222223444455555544
No 315
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=50.51 E-value=28 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=31.8
Q ss_pred cCCeEEEEEecC-------CcEEEEEEcCCCCHHHHHHHHhHHhCCC
Q 012713 74 RGGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (458)
Q Consensus 74 ~~~~~i~vk~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (458)
.+.+.|.|...+ +..+++-|+++.+-.+|..+|.++.+.+
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 345667676442 5578999999999999999999998765
No 316
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.71 E-value=37 Score=26.07 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=34.3
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCC
Q 012713 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (458)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 114 (458)
.+..-|.|-..+|..-++.|++.+|++++-+.+..+.+...
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 34456677778999999999999999999999999887653
No 317
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=49.54 E-value=32 Score=26.30 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=41.0
Q ss_pred EEEeeccCCCcHHHHHHHHHHHhCCCcc-----------CeEEEecC-eeccc------CccccccccCCCCEEEEE
Q 012713 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 222 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~-----------~q~L~~~g-~~L~d------~~tL~~~~i~~~s~i~l~ 222 (458)
...++++++.|..++-+.+.+.-..... ...|+..+ ..|+. +++|.+.|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 5678999999999999999884332222 33344332 23332 577999999999998775
No 318
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.32 E-value=46 Score=25.66 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=46.3
Q ss_pred EEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEE---ecCee--cCCCcchhhcccccccceeEEE
Q 012713 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~---~~g~~--L~d~~tl~~y~i~~~s~i~l~~ 147 (458)
..|-..+..-+++.+....|+.+++..+.++.+...+.+.|. ++|.. |+++..--.-.+.-++.|++..
T Consensus 12 ~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 12 CHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp EEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred EEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 344445667788889999999999999999999877778876 77754 3443222222333444555443
No 319
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=47.65 E-value=24 Score=27.01 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=30.9
Q ss_pred ceeEEEEcCC-------CcEEEEEecCCCcHHHHHHHHHhhcCCC
Q 012713 380 GMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 417 (458)
Q Consensus 380 ~~~i~vk~~~-------g~~~~i~v~~~~tV~~lK~~i~~~~~~~ 417 (458)
.++|.|...+ +..+.+-|+++.+..+|..+|.++++++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4666666543 4578999999999999999999999864
No 320
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=46.72 E-value=90 Score=23.44 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=37.7
Q ss_pred cEEEEEec--CCCcHHHHHHHHHhhcCCC-CCc------------eEEEEcCeecCCCCCc--cccCCCCCCEEEEEEEe
Q 012713 391 KTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQ------------QRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRL 453 (458)
Q Consensus 391 ~~~~i~v~--~~~tV~~lK~~i~~~~~~~-~~~------------q~Li~~G~~L~d~~tl--~~~~i~~~~~i~~~~~~ 453 (458)
+..++++. +..||.+|.+.+.++..-. +.- ..+..+|+-.. .+ .++-+++||.|.++=-.
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEGEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGTGGGCBCCTTCEEEEEECT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccCCCCcCcCCCCEEEEECCC
Confidence 35567776 6789999999999886311 110 11233333211 11 34578999999776555
Q ss_pred cCC
Q 012713 454 RGG 456 (458)
Q Consensus 454 ~~g 456 (458)
.||
T Consensus 97 ~GG 99 (99)
T 2qjl_A 97 HGG 99 (99)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 321
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=45.35 E-value=41 Score=24.39 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=42.6
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~ 451 (458)
.|+|-+++|.. ++++.+.|+.++=..|....+-. -.--..+|+...-+ +-+++|+.|.++.
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L~-----~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPID-----YKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECTT-----CBCCTTCBEEEEE
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCCC-----cccCCCCEEEEEc
Confidence 57888999985 67889999999988887655421 12233477766643 4578888887654
No 322
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=45.12 E-value=58 Score=23.67 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=53.1
Q ss_pred EEeeccCCCcHHHHHHHHHHHhCCCccCeEEE-ecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
..+.|+.......+-+.-++++.+|+..--++ .+|--++..++-...-++.|+.+.|..|-+-|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 45788888888899889999999998776655 56777888888888889999999999876644
No 323
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=44.21 E-value=59 Score=25.99 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHhCCCccCeEEEe--cCeec-----cc--CccccccccCCCCEEEEEE
Q 012713 172 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 172 ~~tV~~LK~~I~~~~gip~~~q~L~~--~g~~L-----~d--~~tL~~~~i~~~s~i~l~~ 223 (458)
..|..+|-+.+..+.|.+. ...+.- ..+.| +| +++|++.|+.+|+.|.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4689998888988888763 444442 23444 22 5899999999999887764
No 324
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=43.18 E-value=83 Score=23.21 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=33.7
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~ 428 (458)
.|+|.+=. ++..|.+.|+++-+..+|+.+|..+..+. +...+.|.+.
T Consensus 12 ~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 12 TTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred ceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 35555433 35689999999999999999999998883 3333444443
No 325
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=43.18 E-value=5.5 Score=28.94 Aligned_cols=53 Identities=8% Similarity=0.176 Sum_probs=37.3
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~ 455 (458)
.+++.+..||.+|.+.+. ++.....+..+|+....+ .-+++||.|.++--..|
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~G 76 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSG 76 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEccccc
Confidence 356677889999987653 566666788899988754 46788888865433333
No 326
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=43.13 E-value=67 Score=23.27 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=36.6
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE
Q 012713 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (458)
Q Consensus 383 i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li 424 (458)
|.+..++++.-.++|.|+.|+.+--.++-+..++.++.....
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 567788998889999999999999999999999988877654
No 327
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=42.33 E-value=90 Score=23.48 Aligned_cols=56 Identities=11% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHhC-CCc---------cCe-------EEEecCeecccCccccccccCCCCEEEEEEEecCC
Q 012713 172 SDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 172 ~~tV~~LK~~I~~~~g-ip~---------~~q-------~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 228 (458)
..||.+|.+.+..+.. +.. ... .+..||+...... -.++-+++|+.|.++....||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 6899999999987641 111 012 5667777653221 234568899999887655443
No 328
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=42.15 E-value=77 Score=25.52 Aligned_cols=76 Identities=9% Similarity=0.207 Sum_probs=52.1
Q ss_pred ecCCeEEEEEecCCcE-------EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEE-ecCeec-CCCcchhhcc---cccc
Q 012713 73 LRGGMQIFVKTLTGKT-------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYN---IQKE 140 (458)
Q Consensus 73 ~~~~~~i~vk~~~g~~-------~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~-~~g~~L-~d~~tl~~y~---i~~~ 140 (458)
.++.+.|.|+-..+.. -.+-|+.+.||.++..-|+.+.++++++-.++ |.+..+ ..+.++++.. -.++
T Consensus 32 yP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeD 111 (130)
T 2zjd_A 32 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDED 111 (130)
T ss_dssp CTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTT
T ss_pred CCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCC
Confidence 3466777776443322 34569999999999999999999999877767 777665 4455666642 2245
Q ss_pred cceeEEEE
Q 012713 141 STLHLVLR 148 (458)
Q Consensus 141 s~i~l~~~ 148 (458)
..+++...
T Consensus 112 GfLyv~Ys 119 (130)
T 2zjd_A 112 GFLYMVYA 119 (130)
T ss_dssp SCEEEEEE
T ss_pred CEEEEEEe
Confidence 56666554
No 329
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=41.10 E-value=30 Score=36.31 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=43.2
Q ss_pred cCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEeC-CcccCCCCcccccc
Q 012713 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYN 288 (458)
Q Consensus 236 ~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~~-g~~l~d~~tL~~~~ 288 (458)
...+...+.+.+..|+.+++..|++.+|+|+..|.|++. |-.++.......|-
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 345666788999999999999999999999999999984 55566666666653
No 330
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.87 E-value=70 Score=23.66 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=37.4
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li 424 (458)
.|.+..++++.-.++|.|+.|+.+--.++-+..++.++.....
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 4677789999889999999999999999999999988877654
No 331
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=39.99 E-value=89 Score=23.16 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=30.7
Q ss_pred eEEEEcCCCcEE-EEEec-CCCcHHHHHHHHHhhcCCCCCceE-EEEc
Q 012713 382 QIFVKTLTGKTI-TLEVE-SSDTIDNVKAKIQDKEGIPPDQQR-LIFA 426 (458)
Q Consensus 382 ~i~vk~~~g~~~-~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~-Li~~ 426 (458)
.|+-|+.+.+.+ .+.++ ..-+|.+||++|.++.+.-..+.- .+|+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~n 55 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITN 55 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 456677666543 57777 566999999999998887444443 3443
No 332
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=39.17 E-value=33 Score=36.00 Aligned_cols=51 Identities=29% Similarity=0.568 Sum_probs=40.8
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe-ecCCCCCcccc
Q 012713 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADY 439 (458)
Q Consensus 389 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~-~L~d~~tl~~~ 439 (458)
..+...+.+.++.|+.+++..|++.+|++++.|.+++.+. .+......++|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3455578999999999999999999999999999999754 55555455554
No 333
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=38.00 E-value=44 Score=28.24 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=43.2
Q ss_pred EEEecCCCcHHHHHHHHHhhcC-CC---------CCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCCC
Q 012713 394 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~-~~---------~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
.++++. .||.+|.+.+...+. +. .....+..||+......- .+.-+++||.|.++--..||+|
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccccc
Confidence 455665 899999999988742 10 233467778887765322 2447899999988766777764
No 334
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=37.85 E-value=62 Score=25.16 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHH
Q 012713 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~ 109 (458)
+.+.|.+-.++|--++++++.+.|+.++|+.+.+.
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 34556666789999999999999999999999876
No 335
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=35.58 E-value=99 Score=23.29 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=39.1
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li 424 (458)
...|.+..++++.-.++|.|+.|+.+--.++-+..++.++.....
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 347788899999889999999999999999999999988877654
No 336
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=34.92 E-value=68 Score=24.92 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=47.1
Q ss_pred cCCeEEEEEecCCcE------EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeec-CCCcchhhcc---cccccce
Q 012713 74 RGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN---IQKESTL 143 (458)
Q Consensus 74 ~~~~~i~vk~~~g~~------~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L-~d~~tl~~y~---i~~~s~i 143 (458)
++.+.|.|+...+.. -.+-|+.+.||+++..-|..+.++++++-.++|.+..+ ..+.++++.. -.++..+
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfL 104 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFL 104 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEE
Confidence 355667776543321 23568889999999999999999998776666655544 4455666542 1234455
Q ss_pred eEE
Q 012713 144 HLV 146 (458)
Q Consensus 144 ~l~ 146 (458)
++.
T Consensus 105 yi~ 107 (110)
T 2r2q_A 105 YVA 107 (110)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 337
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=34.33 E-value=47 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=24.2
Q ss_pred CeEEEEcCCCcEEEEEecCCccHHHHHHHhhc
Q 012713 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~ 32 (458)
|.|.|..++|+. .++....|+.++-..+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~ 30 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHS 30 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCS
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhh
Confidence 889999989986 466678899999887743
No 338
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=33.54 E-value=95 Score=31.50 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=44.7
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC--CceEEEEcC----eecCCCCCccc
Q 012713 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG----KQLEDGRTLAD 438 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~--~~q~Li~~G----~~L~d~~tl~~ 438 (458)
++.+.|..++|....+.|++..|+.+|-+.++.+.|+.. +..-|.+.. +.|+++..+.|
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 467888899999999999999999999999999999864 344555432 12555555443
No 339
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=33.24 E-value=97 Score=23.31 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=35.1
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceE-EEEcCeecC
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLE 431 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~-Li~~G~~L~ 431 (458)
...+.|.|++..+=-++|+.+++-+++.+...+ ++..|+.=.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR 69 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKR 69 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceee
Confidence 357899999999999999999999999887665 667777543
No 340
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=31.40 E-value=96 Score=24.93 Aligned_cols=59 Identities=10% Similarity=0.191 Sum_probs=42.8
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEE-EcCeecC-CCCCcccc--CC-CCCCEEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLE-DGRTLADY--NI-QKESTLHLVLR 452 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li-~~G~~L~-d~~tl~~~--~i-~~~~~i~~~~~ 452 (458)
.+-|..+.||.++...|..+.++++++-..+ |.++.+. -+.++++. +- .++..+++...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 4679999999999999999999988776666 8766554 55667665 12 23456666554
No 341
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=31.38 E-value=1.5e+02 Score=21.51 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=54.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc-CeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012713 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 393 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~-G~~L~d~~tl~~~~i~~~~~i~~~~~~~~g~ 457 (458)
-.+.|......-.+-+-.++++.+|+..--+|-+ |--++-.+|-...-++.|+-+.++-|-|-|.
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 3578999998999888999999999888777764 6677788888888889999999988877664
No 342
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=31.04 E-value=1.6e+02 Score=21.61 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=47.7
Q ss_pred EEeeccCCCcHHHHHHHHHHHh-C--C---CccCeEEEecC--eecccCccccccccCCCCEEEEEEE
Q 012713 165 ITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~-g--i---p~~~q~L~~~g--~~L~d~~tL~~~~i~~~s~i~l~~~ 224 (458)
.-+.|+..+|+.++-++++... | + |-.-.+..++| +.+..+.|+++-||.+-..+.+.+.
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4577889999999999987532 3 3 22246777888 8899999999999999999988764
No 343
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=30.60 E-value=19 Score=27.86 Aligned_cols=69 Identities=26% Similarity=0.380 Sum_probs=52.0
Q ss_pred eEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCCCCc--eEEEEece---eccCCCCccccccccccccceeE
Q 012713 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAGK---QLEDGRTLADYNIQKESTLHLVL 71 (458)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~--q~l~~~g~---~L~d~~tl~~y~i~~~sti~l~~ 71 (458)
.|+|..++ ...+++|...--|..+..|+.++..++-+. --|.+-.+ .|.-..||..|+|+..+.+++..
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 45666665 788899998899999999999888776533 33444332 36667899999999999988753
No 344
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=30.24 E-value=91 Score=24.88 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=49.5
Q ss_pred ecCCeEEEEEecCCcE------EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeec-CCCcchhhcc---cccccc
Q 012713 73 LRGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN---IQKEST 142 (458)
Q Consensus 73 ~~~~~~i~vk~~~g~~------~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L-~d~~tl~~y~---i~~~s~ 142 (458)
.++.+.|.|.-..+.. -.+-|+.+.||+++..-|..+..+++++-.++|-+..+ ..+.++++.. -.++..
T Consensus 33 yP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGf 112 (125)
T 3m95_A 33 YPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFF 112 (125)
T ss_dssp CTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSC
T ss_pred CCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCe
Confidence 3455667776544322 23568999999999999999999998876666655444 4556666642 223445
Q ss_pred eeEEEE
Q 012713 143 LHLVLR 148 (458)
Q Consensus 143 i~l~~~ 148 (458)
+++...
T Consensus 113 LY~~Ys 118 (125)
T 3m95_A 113 LYIAFS 118 (125)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 555443
No 345
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=29.46 E-value=31 Score=26.71 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=50.7
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC--CceEEEEcC---eecCCCCCccccCCCCCCEEEEE
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~--~~q~Li~~G---~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
++|+|...+ ...+++|..+..|+-+.-++-++.+++. .+--|-+.- ..|+-..||..|||+.++.+++.
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 466666655 6678999999999999999998876533 233333322 35788899999999998887653
No 346
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=29.09 E-value=1.6e+02 Score=23.21 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=48.5
Q ss_pred cCCeEEEEEecCCcE------EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeec-CCCcchhhcc---cccccce
Q 012713 74 RGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN---IQKESTL 143 (458)
Q Consensus 74 ~~~~~i~vk~~~g~~------~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L-~d~~tl~~y~---i~~~s~i 143 (458)
++.+.|.|.-..+.. -.+-|+.+.||+++..-|..+..+++++-.++|-+..+ ..+.++++.. -.++..+
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfL 107 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFL 107 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence 455667776543322 24569999999999999999999988776666654444 4455666532 2334455
Q ss_pred eEEEE
Q 012713 144 HLVLR 148 (458)
Q Consensus 144 ~l~~~ 148 (458)
++...
T Consensus 108 yv~Ys 112 (118)
T 3rui_B 108 YVTYS 112 (118)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55543
No 347
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=28.98 E-value=1.2e+02 Score=27.43 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=38.8
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc-------CeecCCCCCcccc
Q 012713 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLADY 439 (458)
Q Consensus 381 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~-------G~~L~d~~tl~~~ 439 (458)
..|.|-..+|....+.|+++.|+++|=..+..+.+.....--.++. -+.|.|...+-+.
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 3456666778889999999999999999998887654333333333 4667777765543
No 348
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=28.96 E-value=97 Score=31.44 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.0
Q ss_pred eEEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCC--CceEEEe
Q 012713 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 273 (458)
Q Consensus 229 ~~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~--~~q~L~~ 273 (458)
+.+.|..++|....+.++++.|+++|-..++++.|+.. +.+-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45567778899999999999999999999999999974 4566765
No 349
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=28.55 E-value=1.6e+02 Score=21.33 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.4
Q ss_pred EEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEE
Q 012713 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272 (458)
Q Consensus 231 i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~ 272 (458)
+-+..++++...++|+++.|+.+--.++.++-|+.|+.+..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 345567788999999999999999999999999999876555
No 350
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=28.06 E-value=1.3e+02 Score=22.36 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=41.6
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecC-CCCCcccc--CCCCCCEEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLE-DGRTLADY--NIQKESTLHLVLR 452 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~-d~~tl~~~--~i~~~~~i~~~~~ 452 (458)
.+.|+.+.||+++..-|.++.++++++-..+| ++..+. .+.++++. +-+++..+++...
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 68899999999999999999999877655555 444444 35676654 2235566656543
No 351
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=27.86 E-value=1.8e+02 Score=21.30 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=47.9
Q ss_pred EEeeccCCCcHHHHHHHHHHH-hC--CC--ccCeEEEecCee--cccCccccccccCCCCEEEEEE
Q 012713 165 ITLEVESSDTIDNVKAKIQDK-EG--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~-~g--ip--~~~q~L~~~g~~--L~d~~tL~~~~i~~~s~i~l~~ 223 (458)
.-+.|+..+|+.++-++++.. .| ++ +.-.+..++|+. +..+.|+++-|+.+-+.|.+.+
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 457788999999999998764 23 22 235678899988 9999999999999999998875
No 352
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=27.72 E-value=36 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.3
Q ss_pred eEEEeecCCCcHHHHHHhhhcccCCC
Q 012713 316 TITLEVESSDTIDNVKAKIQDKEGIP 341 (458)
Q Consensus 316 ~~~l~v~~~~ti~~vK~~I~~~~~i~ 341 (458)
.+++.|.++-+..++..+|+++++..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57899999999999999999998864
No 353
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=26.77 E-value=1.1e+02 Score=23.10 Aligned_cols=55 Identities=5% Similarity=0.080 Sum_probs=39.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhc---CCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012713 391 KTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 391 ~~~~i~v~~~~tV~~lK~~i~~~~---~~~~~~q~Li~~G~~L~d~~tl~~~~i~~~~~i~~~ 450 (458)
..+.+++..+.||.++-+...-.. .+......+-.+|+... .+.-+++||.|-+.
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 346788999999999988775422 34444566777888887 44457889998653
No 354
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=26.69 E-value=1.3e+02 Score=31.27 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=40.2
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEE
Q 012713 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF 425 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~ 425 (458)
.+|.+.|..++|....+.|++.+|+.++-..++.+.|+ +.+..-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35778899999999999999999999999999999997 445555655
No 355
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.94 E-value=1.3e+02 Score=23.76 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=48.8
Q ss_pred cCCeEEEEEecCCcE------EEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEe-cCeecCCCcchhhcc---cccccce
Q 012713 74 RGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN---IQKESTL 143 (458)
Q Consensus 74 ~~~~~i~vk~~~g~~------~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~-~g~~L~d~~tl~~y~---i~~~s~i 143 (458)
++.+.|.|.-..+.. -.+-|+.+.||+++..-|..+..+++++-.++| ++.....+.++++.. -.++..+
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfL 108 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFL 108 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeE
Confidence 455667776544322 235689999999999999999999987766655 555445566666632 2234455
Q ss_pred eEEEE
Q 012713 144 HLVLR 148 (458)
Q Consensus 144 ~l~~~ 148 (458)
++...
T Consensus 109 yv~Ys 113 (119)
T 3h9d_A 109 YMKYS 113 (119)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
No 356
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=25.70 E-value=1.1e+02 Score=22.63 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=22.9
Q ss_pred EEEeec-cchHHHHHHHHhhhhCCCCCceEEEe
Q 012713 242 TLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF 273 (458)
Q Consensus 242 ~~~v~~-~dtV~~LK~~i~~~~gip~~~q~L~~ 273 (458)
++..+. .-+|.+||..|..+.++-...+-|..
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i 53 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREKLKAADCDLQI 53 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred eEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEE
Confidence 344433 55999999999999888766666554
No 357
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=24.92 E-value=1.8e+02 Score=21.87 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=36.9
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li 424 (458)
.|.+-.++++.-.++|.|+.|+.+--.++-+..++.++.....
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 57 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 57 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEE
Confidence 4667788998889999999999999999999999988877654
No 358
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.89 E-value=1.6e+02 Score=21.79 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=37.0
Q ss_pred EEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEEe
Q 012713 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273 (458)
Q Consensus 230 ~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~~ 273 (458)
.|-+..++++...++|.++.|+.+--.++.++-++.++.+..+.
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 52 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR 52 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEE
Confidence 34456678889999999999999999999999999988766653
No 359
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=24.70 E-value=1.9e+02 Score=22.19 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=36.9
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE
Q 012713 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (458)
Q Consensus 382 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li 424 (458)
.|.+..++++.-.++|.|+.|+.+--.++-+..++.++.....
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 3677888998889999999999999999999999988776543
No 360
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=24.23 E-value=1.7e+02 Score=23.00 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCcccc--CC-CCCCEEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY--NI-QKESTLHLVLR 452 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tl~~~--~i-~~~~~i~~~~~ 452 (458)
.+-|+.+.||.++...|..+.++++++-..+| ++....-+.++++. +- .++..+++...
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 46799999999999999999999877655555 55444456677665 12 23446666554
No 361
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=23.77 E-value=1.3e+02 Score=23.70 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=42.2
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCc-eEEEEcCeecCCCCCcccc--CC-CCCCEEEEEEE
Q 012713 394 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY--NI-QKESTLHLVLR 452 (458)
Q Consensus 394 ~i~v~~~~tV~~lK~~i~~~~~~~~~~-q~Li~~G~~L~d~~tl~~~--~i-~~~~~i~~~~~ 452 (458)
.+-|+.+.||+++...|..+.++++++ ..|..++....-+.++++. +- .++..+++...
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 468999999999999999999997776 4455577655566777765 22 23446666554
No 362
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=23.69 E-value=2.6e+02 Score=21.77 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=49.2
Q ss_pred cCCeEEEEEecCCc------EEEEEEcCCCCHHHHHHHHhHHhCCCCCCeEEEecCeec-CCCcchhhcc---cccccce
Q 012713 74 RGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN---IQKESTL 143 (458)
Q Consensus 74 ~~~~~i~vk~~~g~------~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L-~d~~tl~~y~---i~~~s~i 143 (458)
++.+.|.|+...+. .-.+-|+.+.||+++..-|..+.++++++-.++|.+..+ ..+.++.+.. -.++..+
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfL 105 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFL 105 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEE
Confidence 45566777654332 223568889999999999999999998776666665544 4455666542 2335566
Q ss_pred eEEEE
Q 012713 144 HLVLR 148 (458)
Q Consensus 144 ~l~~~ 148 (458)
++...
T Consensus 106 yi~Ys 110 (117)
T 1eo6_A 106 YVAYS 110 (117)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66554
No 363
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=23.50 E-value=1.4e+02 Score=22.33 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=34.1
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceE-EEEcCeec
Q 012713 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQL 430 (458)
Q Consensus 390 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~-Li~~G~~L 430 (458)
...+.|.|++..+=-++|+.++.-+++.+...+ ++..|+.=
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCcee
Confidence 367999999999999999999999999887665 56666543
No 364
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=23.17 E-value=2.3e+02 Score=22.36 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=36.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCCHHHHHHHHhHHhCCCCC------CeEEE---ecCee
Q 012713 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGKQ 125 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~------~Q~L~---~~g~~ 125 (458)
+-..|-..+..-+++.+....|+.+++..+.++.+...+ .+.|. ++|..
T Consensus 10 i~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk 67 (120)
T 2dhz_A 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEK 67 (120)
T ss_dssp EEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCC
T ss_pred EEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcE
Confidence 333344456667788899999999999999999987544 67765 67754
No 365
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.14 E-value=64 Score=23.37 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.4
Q ss_pred cEEEEEecCCccHHHHHHHhhcccCCC
Q 012713 11 KTITLEVESSDTIDNVKAKIQDKEGIP 37 (458)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~~gip 37 (458)
-.++|.|+++-+..+|..||.++.+.+
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 368899999999999999999999875
No 366
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=22.99 E-value=85 Score=22.58 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=25.1
Q ss_pred ccccccccCCCCEEEEEEEecCCeEEEEEccCCceEEE
Q 012713 206 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 243 (458)
Q Consensus 206 ~tL~~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~i~~ 243 (458)
+-|.+.|+.+|+.+.+.-+.+.+-++.|.. +|..+.+
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~v-~g~~iaL 62 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQINV-RGYELSL 62 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEEE-TTEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 357788999999999887765454555554 3444443
No 367
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=22.30 E-value=1.9e+02 Score=21.79 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=36.8
Q ss_pred EEEEEccCCceEEEEeeccchHHHHHHHHhhhhCCCCCceEEE
Q 012713 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272 (458)
Q Consensus 230 ~i~v~~~~g~~i~~~v~~~dtV~~LK~~i~~~~gip~~~q~L~ 272 (458)
.|-+..++++...++|+++.|+.+--.++.++-|+.++.+..+
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 4556667888999999999999999999999999998876655
No 368
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=22.16 E-value=2.3e+02 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhHHhCCCCCCe
Q 012713 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117 (458)
Q Consensus 85 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q 117 (458)
.|..-.+.|++..|+.++-+.+.+++.+..+.+
T Consensus 85 ~gs~k~v~VsS~tTt~eVI~~LL~KFkV~dnP~ 117 (163)
T 3ddc_B 85 LDAIKQMHISSTTTVSEVIQGLLDKFMVVDNPQ 117 (163)
T ss_dssp EEEEEEEEEETTCCHHHHHHHHHHHTTCCSCGG
T ss_pred CCceEEEEEccCCcHHHHHHHHHHHhcccCChh
Confidence 455567899999999999999999988765444
No 369
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=21.75 E-value=5.1e+02 Score=24.42 Aligned_cols=174 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhhhCCCCCceEEEeCCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecC-CC
Q 012713 247 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SD 325 (458)
Q Consensus 247 ~~dtV~~LK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~ 325 (458)
.+-|++++++.|.+++. ..-....+.+.+....+..|+|...-.+.-.+.+.+ ..
T Consensus 117 aG~T~~e~~~~I~~~L~------------------------~~~~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~ 172 (359)
T 2j58_A 117 AGKTVSQVRQDITSRLT------------------------TYIESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL 172 (359)
T ss_dssp TTCCHHHHHHHHHHHHT------------------------TTSSSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHHHH------------------------HhccCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCC
Q ss_pred cHHHHHHhhhcccCCCC----CCeeEEecCe--------ecCCCCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEE
Q 012713 326 TIDNVKAKIQDKEGIPP----DQQRLIFAGK--------QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI 393 (458)
Q Consensus 326 ti~~vK~~I~~~~~i~~----~~q~L~~~g~--------~L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~ 393 (458)
|+.+. |..-.|+.. ..-.|.=+|+ .+.++..-.++-+++|++|++-.+ ....++|...-++.-
T Consensus 173 tl~~a---i~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~--~~~~v~V~GeV~~pg 247 (359)
T 2j58_A 173 TVMDA---INAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSN--DDLKVFVMGEVGKQS 247 (359)
T ss_dssp BHHHH---HHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBG--GGCEEEEEESBSSCE
T ss_pred cHHHH---HHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeec--eeeeEEeeccccCcc
Q ss_pred EEEec-CCCcHHHHHHHHHhhcC-CCCCceEEEEcCe------------ecCCCCCcc-----ccCCCCCCEEEE
Q 012713 394 TLEVE-SSDTIDNVKAKIQDKEG-IPPDQQRLIFAGK------------QLEDGRTLA-----DYNIQKESTLHL 449 (458)
Q Consensus 394 ~i~v~-~~~tV~~lK~~i~~~~~-~~~~~q~Li~~G~------------~L~d~~tl~-----~~~i~~~~~i~~ 449 (458)
.++++ ++.|+.++-...---.. -.-....+++... .|+-..... +|.+++||+|++
T Consensus 248 ~~~l~~~~~tl~eal~~AGGi~~~~A~~~~I~v~R~~~~~~~~~~~~v~~ldl~~~~~~~~~~~f~Lq~gDvVyV 322 (359)
T 2j58_A 248 TLKMDRSGMTLAEALGNAEGISQEMSDATGIFVVRQLKGDRTGKIADIYQLNAQDASAMVLGTEFQLQPYDIVYV 322 (359)
T ss_dssp EEECBTTBCBHHHHHHHTTCBCTTTEEEEEEEEEEECCSCTTCCCEEEEEECCSBGGGHHHHTTCBCCTTEEEEE
T ss_pred eEeecCCCCCHHHHHHhCCCCCcccCCcceEEEEEecCCCCCccceEEEEecccCcccccccCCCccCCCCEEEE
No 370
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=27.00 E-value=20 Score=27.58 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHhCCCccCeEEEecCeecccCccccccccCCCCEEEEEEEecCCeEEEEEccCCceEEEEeeccchHHH
Q 012713 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 253 (458)
Q Consensus 174 tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~i~~~v~~~dtV~~ 253 (458)
....+++.|++..+++++ .+.++.+|.++|+..-..+.+.........|.+... ++....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~-------~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDD-------ELDLLETVDE 90 (103)
Confidence 456677788888887755 366777889999977777777766654433333221 1244568888
Q ss_pred HHHHHhhh
Q 012713 254 VKAKIQDK 261 (458)
Q Consensus 254 LK~~i~~~ 261 (458)
|.+.|..+
T Consensus 91 l~~~I~~~ 98 (103)
T 2lte_A 91 LFQLVEKH 98 (103)
Confidence 88777654
No 371
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=21.22 E-value=95 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.1
Q ss_pred eEEEEcCCCcEEEEEecCCccHHHHHHHhhcccCCC
Q 012713 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (458)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip 37 (458)
+|.|.+.+|+..++++.+..|+.+.=.+ .|++
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~----~gi~ 33 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD----AGID 33 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH----TTCT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH----cCCC
Confidence 6888999999999999999999884332 4665
No 372
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=20.27 E-value=98 Score=22.57 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=24.5
Q ss_pred cccccccCCCCEEEEEEEecCCeEEEEEccCCceEEE
Q 012713 207 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 243 (458)
Q Consensus 207 tL~~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~i~~ 243 (458)
-|.+.|+.+|+.+.+.-+.+.+-++.|.. +|..+.+
T Consensus 30 rL~~mGl~pG~~V~V~~~~p~~gpi~v~v-~g~~iaL 65 (86)
T 2k4y_A 30 KIMDMGIVRGTEIYIEGKAPMGDPIALRL-RGYSLSL 65 (86)
T ss_dssp HHHHHTCCTTCEEEEEEECTTSCSEEEEE-TTEEEEE
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 57788999999999887765444555554 3444443
No 373
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=20.20 E-value=1.9e+02 Score=22.33 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=43.4
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC--------CCCCceEEEE-c--Ce--ecCC-CCCccccCCC
Q 012713 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QLED-GRTLADYNIQ 442 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--------~~~~~q~Li~-~--G~--~L~d-~~tl~~~~i~ 442 (458)
++...|.+-.++|-.+.++++.+.|+.++|+.+-++.+ -.++.-.+.. + |. ++.| ++.|.|...-
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 34456666778898889999999999999998877743 2333333333 2 23 3644 4777777654
Done!