Query 012714
Match_columns 458
No_of_seqs 575 out of 2808
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 3.2E-20 6.8E-25 150.0 11.6 95 362-456 9-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 4E-20 8.7E-25 149.4 10.4 99 53-151 4-102 (103)
3 KOG0003 Ubiquitin/60s ribosoma 99.8 1.2E-21 2.5E-26 151.0 1.0 76 1-76 1-76 (128)
4 KOG0004 Ubiquitin/40S ribosoma 99.8 1E-19 2.2E-24 151.8 3.9 77 1-77 1-77 (156)
5 cd01807 GDX_N ubiquitin-like d 99.8 6.7E-19 1.5E-23 134.5 6.9 73 1-73 1-73 (74)
6 cd01793 Fubi Fubi ubiquitin-li 99.8 1E-18 2.2E-23 133.4 7.4 73 1-75 1-73 (74)
7 cd01793 Fubi Fubi ubiquitin-li 99.7 6.7E-18 1.5E-22 128.9 9.2 74 381-456 1-74 (74)
8 PTZ00044 ubiquitin; Provisiona 99.7 3.4E-18 7.4E-23 131.5 7.4 75 1-75 1-75 (76)
9 cd01797 NIRF_N amino-terminal 99.7 2.8E-18 6.1E-23 131.7 6.9 74 1-74 1-76 (78)
10 cd01807 GDX_N ubiquitin-like d 99.7 1.1E-17 2.3E-22 127.9 8.9 73 381-453 1-73 (74)
11 PTZ00044 ubiquitin; Provisiona 99.7 1.6E-17 3.4E-22 127.8 9.4 76 381-456 1-76 (76)
12 cd01797 NIRF_N amino-terminal 99.7 1.8E-17 3.9E-22 127.3 8.9 75 381-455 1-77 (78)
13 cd01810 ISG15_repeat2 ISG15 ub 99.7 3.2E-17 7E-22 125.2 8.9 74 383-456 1-74 (74)
14 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.3E-17 2.9E-22 127.3 6.7 73 3-75 1-73 (74)
15 KOG0005 Ubiquitin-like protein 99.7 4.4E-18 9.5E-23 116.7 3.5 70 1-70 1-70 (70)
16 cd01804 midnolin_N Ubiquitin-l 99.7 5.7E-17 1.2E-21 124.8 9.2 76 380-456 1-76 (78)
17 cd01806 Nedd8 Nebb8-like ubiq 99.7 7.3E-17 1.6E-21 124.1 9.7 76 381-456 1-76 (76)
18 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 6.5E-17 1.4E-21 122.2 8.9 72 380-451 1-72 (73)
19 cd01803 Ubiquitin Ubiquitin. U 99.7 1.1E-16 2.4E-21 123.1 9.4 76 381-456 1-76 (76)
20 cd01806 Nedd8 Nebb8-like ubiq 99.7 1E-16 2.2E-21 123.3 7.8 75 1-75 1-75 (76)
21 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.6E-16 3.5E-21 120.0 8.4 71 77-147 2-72 (73)
22 cd01803 Ubiquitin Ubiquitin. U 99.7 1E-16 2.2E-21 123.3 7.5 75 1-75 1-75 (76)
23 cd01805 RAD23_N Ubiquitin-like 99.7 2.6E-16 5.6E-21 121.3 9.6 74 381-454 1-76 (77)
24 cd01794 DC_UbP_C dendritic cel 99.7 1.8E-16 3.8E-21 119.1 7.9 69 384-452 2-70 (70)
25 cd01798 parkin_N amino-termina 99.7 9.2E-17 2E-21 121.3 6.0 70 3-72 1-70 (70)
26 cd01798 parkin_N amino-termina 99.7 2.3E-16 5E-21 119.1 8.0 70 383-452 1-70 (70)
27 cd01804 midnolin_N Ubiquitin-l 99.7 3.5E-16 7.5E-21 120.5 8.6 76 76-152 1-76 (78)
28 cd01794 DC_UbP_C dendritic cel 99.7 1.9E-16 4.1E-21 118.9 6.9 69 79-147 1-69 (70)
29 cd01790 Herp_N Homocysteine-re 99.6 5E-16 1.1E-20 117.8 7.9 72 380-451 1-78 (79)
30 KOG0003 Ubiquitin/60s ribosoma 99.6 2E-17 4.4E-22 127.6 0.1 76 229-304 1-76 (128)
31 KOG0005 Ubiquitin-like protein 99.6 1.8E-16 3.9E-21 108.8 4.4 70 381-450 1-70 (70)
32 cd01805 RAD23_N Ubiquitin-like 99.6 6.3E-16 1.4E-20 119.2 7.7 72 1-72 1-74 (77)
33 cd01792 ISG15_repeat1 ISG15 ub 99.6 8.3E-16 1.8E-20 119.1 8.2 74 381-454 3-78 (80)
34 PF00240 ubiquitin: Ubiquitin 99.6 1.1E-15 2.4E-20 115.2 8.2 69 386-454 1-69 (69)
35 cd01809 Scythe_N Ubiquitin-lik 99.6 7.4E-16 1.6E-20 117.2 6.9 72 1-72 1-72 (72)
36 cd01809 Scythe_N Ubiquitin-lik 99.6 1.9E-15 4.1E-20 114.9 8.8 72 381-452 1-72 (72)
37 cd01808 hPLIC_N Ubiquitin-like 99.6 1.9E-15 4.1E-20 114.4 8.5 71 381-452 1-71 (71)
38 KOG0004 Ubiquitin/40S ribosoma 99.6 6.1E-16 1.3E-20 129.2 4.5 77 229-305 1-77 (156)
39 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.4E-15 3E-20 117.9 5.7 72 1-72 3-76 (80)
40 cd01808 hPLIC_N Ubiquitin-like 99.6 2.2E-15 4.8E-20 114.1 6.6 71 1-72 1-71 (71)
41 cd01790 Herp_N Homocysteine-re 99.6 3.7E-15 8E-20 113.0 7.3 72 76-147 1-78 (79)
42 cd01763 Sumo Small ubiquitin-r 99.6 1.2E-14 2.6E-19 114.3 10.4 79 378-456 9-87 (87)
43 cd01800 SF3a120_C Ubiquitin-li 99.6 5.3E-15 1.2E-19 113.4 8.2 70 388-457 5-74 (76)
44 cd01796 DDI1_N DNA damage indu 99.6 5.7E-15 1.2E-19 111.6 7.6 67 383-449 1-69 (71)
45 PF00240 ubiquitin: Ubiquitin 99.6 9.3E-15 2E-19 110.1 7.6 68 82-149 1-68 (69)
46 cd01796 DDI1_N DNA damage indu 99.6 4.2E-15 9E-20 112.3 5.5 68 3-70 1-70 (71)
47 cd01800 SF3a120_C Ubiquitin-li 99.5 1.3E-14 2.8E-19 111.3 5.9 68 8-75 5-72 (76)
48 cd01812 BAG1_N Ubiquitin-like 99.5 4.4E-14 9.6E-19 107.0 7.8 70 381-451 1-70 (71)
49 cd01763 Sumo Small ubiquitin-r 99.5 4.7E-14 1E-18 111.0 7.8 76 1-76 12-87 (87)
50 cd01813 UBP_N UBP ubiquitin pr 99.5 5.1E-14 1.1E-18 106.9 7.4 69 77-146 1-72 (74)
51 cd01812 BAG1_N Ubiquitin-like 99.5 1.4E-13 3E-18 104.3 7.4 70 77-147 1-70 (71)
52 cd01813 UBP_N UBP ubiquitin pr 99.5 2.6E-13 5.6E-18 103.1 7.9 69 381-450 1-72 (74)
53 TIGR00601 rad23 UV excision re 99.4 3.3E-13 7.1E-18 133.4 8.9 74 381-454 1-77 (378)
54 cd01799 Hoil1_N Ubiquitin-like 99.4 3.8E-13 8.2E-18 102.2 6.3 70 1-71 1-74 (75)
55 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 6.1E-13 1.3E-17 99.4 5.5 55 397-451 16-74 (75)
56 smart00213 UBQ Ubiquitin homol 99.4 1.5E-12 3.2E-17 96.4 7.3 64 381-445 1-64 (64)
57 cd01799 Hoil1_N Ubiquitin-like 99.4 2.2E-12 4.8E-17 98.0 8.0 65 386-451 8-74 (75)
58 cd01811 OASL_repeat1 2'-5' oli 99.3 2.4E-12 5.2E-17 93.3 6.7 74 305-379 1-79 (80)
59 smart00213 UBQ Ubiquitin homol 99.3 1.7E-12 3.7E-17 96.0 6.2 64 1-65 1-64 (64)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.1E-12 2.3E-17 98.1 4.7 54 94-147 18-74 (75)
61 cd01814 NTGP5 Ubiquitin-like N 99.3 1.6E-12 3.5E-17 103.7 4.9 76 75-150 3-92 (113)
62 KOG0010 Ubiquitin-like protein 99.3 2.7E-12 5.8E-17 126.7 7.5 74 380-454 15-88 (493)
63 KOG0011 Nucleotide excision re 99.3 3.6E-12 7.9E-17 119.4 7.4 75 381-455 1-77 (340)
64 TIGR00601 rad23 UV excision re 99.3 3.6E-12 7.8E-17 126.0 7.0 73 1-73 1-76 (378)
65 cd01814 NTGP5 Ubiquitin-like N 99.3 2.4E-12 5.3E-17 102.6 4.5 73 2-74 6-92 (113)
66 cd01769 UBL Ubiquitin-like dom 99.2 4.7E-11 1E-15 89.6 7.8 67 385-451 2-68 (69)
67 PF11976 Rad60-SLD: Ubiquitin- 99.2 5.8E-11 1.3E-15 90.1 8.0 71 381-451 1-72 (72)
68 cd01795 USP48_C USP ubiquitin- 99.1 8.4E-11 1.8E-15 90.8 6.2 62 164-225 16-78 (107)
69 cd01769 UBL Ubiquitin-like dom 99.1 2.3E-10 4.9E-15 85.9 7.3 67 81-147 2-68 (69)
70 KOG0010 Ubiquitin-like protein 99.1 8.9E-11 1.9E-15 116.1 6.4 74 75-149 14-87 (493)
71 cd01795 USP48_C USP ubiquitin- 99.1 1.1E-10 2.4E-15 90.1 5.5 61 316-376 16-77 (107)
72 KOG0011 Nucleotide excision re 99.1 1.4E-10 3.1E-15 108.9 6.6 74 77-150 1-76 (340)
73 KOG0001 Ubiquitin and ubiquiti 99.1 5.6E-10 1.2E-14 84.5 7.7 73 2-74 1-73 (75)
74 PF11976 Rad60-SLD: Ubiquitin- 99.0 9.9E-10 2.2E-14 83.3 8.1 71 77-147 1-72 (72)
75 cd01789 Alp11_N Ubiquitin-like 98.9 1.5E-08 3.2E-13 79.0 8.7 70 382-451 3-80 (84)
76 KOG0001 Ubiquitin and ubiquiti 98.8 3.1E-08 6.7E-13 74.8 9.7 73 383-455 2-74 (75)
77 cd01789 Alp11_N Ubiquitin-like 98.8 2.4E-08 5.3E-13 77.8 7.9 70 78-147 3-80 (84)
78 cd01788 ElonginB Ubiquitin-lik 98.8 2.5E-08 5.5E-13 79.3 7.7 75 383-458 5-86 (119)
79 PF13881 Rad60-SLD_2: Ubiquiti 98.7 9.9E-08 2.1E-12 77.9 10.1 75 380-454 2-90 (111)
80 cd01788 ElonginB Ubiquitin-lik 98.7 6.3E-08 1.4E-12 77.0 7.2 73 154-226 2-82 (119)
81 PF14560 Ubiquitin_2: Ubiquiti 98.6 1.5E-07 3.2E-12 74.1 8.3 69 382-450 3-81 (87)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.6 1.6E-07 3.4E-12 76.7 8.3 75 76-150 2-90 (111)
83 PLN02560 enoyl-CoA reductase 98.6 1.2E-07 2.5E-12 91.9 8.2 69 381-449 1-80 (308)
84 PLN02560 enoyl-CoA reductase 98.6 8.9E-08 1.9E-12 92.7 6.5 69 1-69 1-80 (308)
85 KOG4248 Ubiquitin-like protein 98.6 8.3E-08 1.8E-12 102.2 6.6 73 382-455 4-76 (1143)
86 cd01811 OASL_repeat1 2'-5' oli 98.6 3E-07 6.5E-12 67.1 7.4 71 77-148 1-76 (80)
87 KOG4248 Ubiquitin-like protein 98.6 6.2E-08 1.4E-12 103.2 5.6 72 78-150 4-75 (1143)
88 PF14560 Ubiquitin_2: Ubiquiti 98.6 3.3E-07 7.2E-12 72.1 8.4 71 77-147 2-82 (87)
89 cd01801 Tsc13_N Ubiquitin-like 98.4 5.8E-07 1.3E-11 68.9 6.7 52 398-449 20-74 (77)
90 PF11543 UN_NPL4: Nuclear pore 98.4 5.7E-07 1.2E-11 69.1 5.4 71 378-449 2-77 (80)
91 cd01801 Tsc13_N Ubiquitin-like 98.2 2.7E-06 5.8E-11 65.2 6.2 52 94-145 20-74 (77)
92 PF11543 UN_NPL4: Nuclear pore 98.2 2E-06 4.3E-11 66.1 5.3 71 151-222 3-78 (80)
93 KOG1769 Ubiquitin-like protein 98.2 1.5E-05 3.2E-10 62.3 9.6 80 378-457 18-97 (99)
94 cd00196 UBQ Ubiquitin-like pro 98.2 7.7E-06 1.7E-10 59.0 7.8 66 386-451 3-68 (69)
95 cd00196 UBQ Ubiquitin-like pro 98.0 2.9E-05 6.3E-10 55.9 6.9 66 82-147 3-68 (69)
96 KOG3493 Ubiquitin-like protein 97.9 4.3E-06 9.4E-11 59.1 1.7 69 154-222 3-71 (73)
97 KOG3493 Ubiquitin-like protein 97.9 4.5E-06 9.8E-11 59.0 1.8 70 381-450 2-71 (73)
98 KOG1769 Ubiquitin-like protein 97.9 9.3E-05 2E-09 57.8 8.3 77 153-229 21-97 (99)
99 KOG0006 E3 ubiquitin-protein l 97.8 3.6E-05 7.8E-10 72.0 5.8 70 382-451 2-74 (446)
100 KOG0006 E3 ubiquitin-protein l 97.6 0.00011 2.4E-09 68.9 6.5 64 86-149 13-77 (446)
101 KOG1872 Ubiquitin-specific pro 97.6 8.9E-05 1.9E-09 73.7 6.0 71 77-148 4-75 (473)
102 COG5227 SMT3 Ubiquitin-like pr 97.6 8.7E-05 1.9E-09 56.3 3.8 79 379-457 23-101 (103)
103 PF11470 TUG-UBL1: GLUT4 regul 97.5 0.00029 6.3E-09 51.5 5.5 63 235-297 3-65 (65)
104 KOG4495 RNA polymerase II tran 97.4 0.00015 3.2E-09 55.8 3.8 61 1-61 1-64 (110)
105 KOG4495 RNA polymerase II tran 97.4 0.00019 4.1E-09 55.2 4.1 53 163-215 12-66 (110)
106 KOG1872 Ubiquitin-specific pro 97.1 0.0012 2.6E-08 65.8 7.2 72 382-454 5-77 (473)
107 PF11470 TUG-UBL1: GLUT4 regul 97.1 0.0022 4.7E-08 47.0 6.2 63 159-221 3-65 (65)
108 PF08817 YukD: WXG100 protein 97.0 0.002 4.3E-08 49.5 6.0 69 381-449 3-78 (79)
109 PF00789 UBX: UBX domain; Int 97.0 0.006 1.3E-07 47.1 8.5 72 378-449 4-80 (82)
110 PF10302 DUF2407: DUF2407 ubiq 97.0 0.0019 4.2E-08 51.4 5.8 57 383-439 3-64 (97)
111 PF13019 Telomere_Sde2: Telome 96.9 0.004 8.6E-08 53.9 7.5 62 1-62 1-70 (162)
112 PF10302 DUF2407: DUF2407 ubiq 96.8 0.003 6.5E-08 50.3 5.9 58 79-136 3-65 (97)
113 PF08817 YukD: WXG100 protein 96.8 0.0033 7.1E-08 48.3 5.8 68 154-221 4-78 (79)
114 PF13019 Telomere_Sde2: Telome 96.7 0.013 2.7E-07 50.8 8.8 76 381-456 1-88 (162)
115 COG5417 Uncharacterized small 96.5 0.018 3.9E-07 42.4 7.4 69 381-449 5-80 (81)
116 PF00789 UBX: UBX domain; Int 96.5 0.018 3.9E-07 44.4 8.0 71 152-222 6-81 (82)
117 cd01770 p47_UBX p47-like ubiqu 96.3 0.033 7.2E-07 42.6 8.3 69 379-447 3-75 (79)
118 smart00166 UBX Domain present 96.2 0.026 5.6E-07 43.4 7.5 70 152-221 4-78 (80)
119 smart00166 UBX Domain present 96.1 0.041 8.8E-07 42.3 8.0 71 75-145 3-78 (80)
120 KOG0013 Uncharacterized conser 95.8 0.012 2.6E-07 52.4 4.5 62 84-145 154-215 (231)
121 COG5227 SMT3 Ubiquitin-like pr 95.8 0.0083 1.8E-07 45.8 2.7 75 153-227 25-99 (103)
122 cd01767 UBX UBX (ubiquitin reg 95.7 0.097 2.1E-06 39.8 8.7 67 380-447 2-73 (77)
123 cd01774 Faf1_like2_UBX Faf1 ik 95.7 0.1 2.3E-06 40.5 8.9 71 378-449 2-82 (85)
124 cd01772 SAKS1_UBX SAKS1-like U 95.7 0.062 1.3E-06 41.2 7.4 68 153-221 5-77 (79)
125 cd01767 UBX UBX (ubiquitin reg 95.6 0.074 1.6E-06 40.5 7.6 67 153-221 3-74 (77)
126 KOG0013 Uncharacterized conser 95.4 0.023 4.9E-07 50.8 4.7 63 389-451 155-219 (231)
127 cd01770 p47_UBX p47-like ubiqu 95.4 0.1 2.3E-06 39.9 7.7 67 76-142 4-74 (79)
128 cd01772 SAKS1_UBX SAKS1-like U 95.2 0.11 2.5E-06 39.7 7.5 68 77-145 5-77 (79)
129 KOG4583 Membrane-associated ER 95.2 0.0089 1.9E-07 57.0 1.5 75 378-452 7-87 (391)
130 COG5417 Uncharacterized small 95.0 0.16 3.4E-06 37.6 7.0 67 231-297 9-80 (81)
131 PF12436 USP7_ICP0_bdg: ICP0-b 94.9 0.14 3E-06 48.5 8.9 108 318-425 88-224 (249)
132 cd01773 Faf1_like1_UBX Faf1 ik 94.9 0.17 3.7E-06 38.8 7.5 69 153-222 6-79 (82)
133 cd01774 Faf1_like2_UBX Faf1 ik 94.9 0.17 3.8E-06 39.3 7.7 69 152-221 4-82 (85)
134 cd01771 Faf1_UBX Faf1 UBX doma 94.8 0.2 4.3E-06 38.4 7.7 69 152-221 4-77 (80)
135 PF14836 Ubiquitin_3: Ubiquiti 94.5 0.26 5.7E-06 38.3 7.6 67 391-458 14-86 (88)
136 KOG1639 Steroid reductase requ 94.2 0.093 2E-06 48.2 5.4 69 381-449 1-76 (297)
137 PF11620 GABP-alpha: GA-bindin 93.6 0.49 1.1E-05 36.1 7.4 59 240-298 4-62 (88)
138 cd01773 Faf1_like1_UBX Faf1 ik 93.6 0.58 1.3E-05 36.0 8.0 69 77-146 6-79 (82)
139 PF12436 USP7_ICP0_bdg: ICP0-b 93.5 0.93 2E-05 42.9 11.2 118 3-120 71-223 (249)
140 cd01771 Faf1_UBX Faf1 UBX doma 93.5 0.68 1.5E-05 35.5 8.4 70 228-298 4-78 (80)
141 PF15044 CLU_N: Mitochondrial 93.5 0.15 3.3E-06 38.7 4.6 55 397-451 1-57 (76)
142 PF14533 USP7_C2: Ubiquitin-sp 93.4 0.48 1E-05 43.7 8.8 123 87-211 34-193 (213)
143 KOG4583 Membrane-associated ER 93.2 0.043 9.3E-07 52.5 1.6 73 76-148 9-87 (391)
144 PF14533 USP7_C2: Ubiquitin-sp 93.1 0.6 1.3E-05 43.1 9.0 104 163-268 34-162 (213)
145 PF09379 FERM_N: FERM N-termin 92.8 0.65 1.4E-05 35.3 7.4 66 385-450 1-75 (80)
146 PF09379 FERM_N: FERM N-termin 92.5 0.72 1.6E-05 35.0 7.3 62 233-294 1-69 (80)
147 KOG1639 Steroid reductase requ 91.8 0.32 6.9E-06 44.8 5.2 69 153-221 1-76 (297)
148 PRK06437 hypothetical protein; 91.8 1.4 3E-05 32.5 7.8 59 160-227 8-66 (67)
149 PF15044 CLU_N: Mitochondrial 91.8 0.27 5.9E-06 37.3 4.0 59 321-379 1-61 (76)
150 PRK06437 hypothetical protein; 90.1 2.6 5.7E-05 31.0 7.9 58 390-456 10-67 (67)
151 cd06409 PB1_MUG70 The MUG70 pr 90.1 1 2.2E-05 35.0 5.8 43 383-425 3-48 (86)
152 PRK08364 sulfur carrier protei 89.5 3.2 6.9E-05 30.8 8.1 66 381-456 5-70 (70)
153 cd01760 RBD Ubiquitin-like dom 89.4 1 2.3E-05 33.7 5.3 45 231-275 2-46 (72)
154 smart00455 RBD Raf-like Ras-bi 89.1 1.1 2.5E-05 33.3 5.3 44 232-275 3-46 (70)
155 KOG3206 Alpha-tubulin folding 89.1 1.3 2.8E-05 39.8 6.4 60 165-224 15-81 (234)
156 PF11620 GABP-alpha: GA-bindin 88.9 1.5 3.3E-05 33.5 5.8 60 165-224 5-64 (88)
157 cd01760 RBD Ubiquitin-like dom 88.4 1.6 3.5E-05 32.6 5.7 45 383-427 2-46 (72)
158 cd00754 MoaD Ubiquitin domain 88.1 2.1 4.6E-05 32.3 6.5 60 392-456 17-80 (80)
159 smart00455 RBD Raf-like Ras-bi 88.0 2.4 5.2E-05 31.5 6.4 51 383-433 2-54 (70)
160 cd06406 PB1_P67 A PB1 domain i 88.0 2.5 5.3E-05 32.2 6.5 37 392-428 12-48 (80)
161 cd00754 MoaD Ubiquitin domain 87.3 2.4 5.2E-05 32.0 6.4 60 164-228 17-80 (80)
162 cd06409 PB1_MUG70 The MUG70 pr 86.6 2 4.2E-05 33.4 5.4 43 155-197 3-48 (86)
163 PF08337 Plexin_cytopl: Plexin 86.3 1.1 2.3E-05 46.9 5.0 68 313-380 200-293 (539)
164 cd06406 PB1_P67 A PB1 domain i 86.1 2.5 5.4E-05 32.2 5.6 38 164-201 12-49 (80)
165 KOG3206 Alpha-tubulin folding 86.1 2.3 5E-05 38.2 6.3 59 393-451 15-80 (234)
166 KOG4261 Talin [Cytoskeleton] 86.1 0.43 9.4E-06 50.7 2.0 173 162-375 12-194 (1003)
167 PRK08364 sulfur carrier protei 85.0 8.1 0.00018 28.6 8.0 56 164-228 15-70 (70)
168 cd01818 TIAM1_RBD Ubiquitin do 85.0 2.4 5.1E-05 31.8 4.9 50 232-281 3-52 (77)
169 PLN02799 Molybdopterin synthas 84.9 3.6 7.9E-05 31.4 6.3 71 381-456 2-82 (82)
170 smart00295 B41 Band 4.1 homolo 84.1 6.8 0.00015 35.4 8.9 70 229-298 4-81 (207)
171 cd06407 PB1_NLP A PB1 domain i 83.8 7.9 0.00017 29.8 7.6 42 160-201 7-49 (82)
172 PF14836 Ubiquitin_3: Ubiquiti 83.6 6.9 0.00015 30.5 7.1 62 163-225 14-81 (88)
173 TIGR03028 EpsE polysaccharide 82.9 42 0.0009 31.5 21.2 207 210-449 1-234 (239)
174 PRK06488 sulfur carrier protei 82.7 7.4 0.00016 28.2 6.9 60 161-228 6-65 (65)
175 KOG0012 DNA damage inducible p 82.0 2 4.3E-05 42.0 4.4 61 389-449 11-73 (380)
176 PF14453 ThiS-like: ThiS-like 81.8 6.2 0.00013 28.0 5.7 46 394-450 9-54 (57)
177 PLN02799 Molybdopterin synthas 81.6 5.8 0.00012 30.3 6.2 61 163-228 19-82 (82)
178 PF02196 RBD: Raf-like Ras-bin 81.6 6 0.00013 29.5 6.0 57 383-439 3-61 (71)
179 smart00666 PB1 PB1 domain. Pho 81.6 5.6 0.00012 30.1 6.2 46 382-428 3-48 (81)
180 PF10790 DUF2604: Protein of U 81.2 7.3 0.00016 28.0 5.9 65 161-225 4-72 (76)
181 smart00295 B41 Band 4.1 homolo 81.0 14 0.00031 33.2 9.8 72 379-450 2-81 (207)
182 PRK06488 sulfur carrier protei 80.8 8.4 0.00018 28.0 6.6 61 388-456 5-65 (65)
183 TIGR01682 moaD molybdopterin c 79.2 12 0.00025 28.4 7.2 59 393-456 18-80 (80)
184 cd06407 PB1_NLP A PB1 domain i 78.5 5.9 0.00013 30.5 5.3 42 236-277 7-49 (82)
185 PF02196 RBD: Raf-like Ras-bin 77.4 11 0.00023 28.1 6.3 45 3-47 3-47 (71)
186 PRK07440 hypothetical protein; 77.3 17 0.00036 27.0 7.3 68 379-456 3-70 (70)
187 PF10790 DUF2604: Protein of U 76.2 11 0.00023 27.2 5.5 65 237-301 4-72 (76)
188 TIGR01682 moaD molybdopterin c 75.9 16 0.00034 27.7 7.1 59 165-228 18-80 (80)
189 PF02597 ThiS: ThiS family; I 75.8 8.5 0.00018 28.7 5.5 63 392-456 13-77 (77)
190 PRK05863 sulfur carrier protei 75.1 15 0.00033 26.7 6.5 60 389-456 6-65 (65)
191 PF14453 ThiS-like: ThiS-like 74.8 9.4 0.0002 27.1 5.0 46 1-57 1-46 (57)
192 PF12754 Blt1: Cell-cycle cont 74.0 1 2.2E-05 43.2 0.0 62 381-442 79-160 (309)
193 KOG0012 DNA damage inducible p 73.5 4.8 0.0001 39.4 4.3 65 161-225 11-77 (380)
194 TIGR01687 moaD_arch MoaD famil 73.4 22 0.00047 27.4 7.5 61 164-228 17-88 (88)
195 PF02597 ThiS: ThiS family; I 73.3 13 0.00028 27.7 6.0 63 164-228 13-77 (77)
196 smart00666 PB1 PB1 domain. Pho 72.9 20 0.00043 27.0 7.0 45 78-123 3-47 (81)
197 KOG4598 Putative ubiquitin-spe 72.5 11 0.00023 40.3 6.8 178 164-344 878-1101(1203)
198 PRK05659 sulfur carrier protei 72.3 23 0.0005 25.6 6.9 61 389-456 6-66 (66)
199 cd06408 PB1_NoxR The PB1 domai 72.0 19 0.00041 28.0 6.5 54 381-438 3-56 (86)
200 cd00565 ThiS ThiaminS ubiquiti 71.8 18 0.00038 26.2 6.2 57 167-228 9-65 (65)
201 cd00565 ThiS ThiaminS ubiquiti 71.2 19 0.00041 26.1 6.2 61 389-456 5-65 (65)
202 PF12754 Blt1: Cell-cycle cont 71.1 1.3 2.9E-05 42.5 0.0 43 172-214 103-160 (309)
203 TIGR01687 moaD_arch MoaD famil 70.3 24 0.00051 27.2 7.0 61 392-456 17-88 (88)
204 KOG4250 TANK binding protein k 70.0 8 0.00017 41.5 5.4 44 7-50 321-364 (732)
205 PRK06083 sulfur carrier protei 69.5 26 0.00056 27.0 6.9 67 380-456 18-84 (84)
206 cd01817 RGS12_RBD Ubiquitin do 69.1 20 0.00043 26.8 5.8 44 385-428 4-47 (73)
207 TIGR01683 thiS thiamine biosyn 69.0 24 0.00053 25.4 6.4 61 161-228 4-64 (64)
208 cd01817 RGS12_RBD Ubiquitin do 68.9 15 0.00033 27.5 5.1 44 233-276 4-47 (73)
209 cd06408 PB1_NoxR The PB1 domai 68.4 27 0.00059 27.1 6.7 45 77-123 3-47 (86)
210 PRK08053 sulfur carrier protei 68.0 39 0.00085 24.5 7.3 61 389-456 6-66 (66)
211 smart00144 PI3K_rbd PI3-kinase 67.9 36 0.00078 27.6 7.8 75 380-454 17-106 (108)
212 PRK11840 bifunctional sulfur c 67.8 21 0.00045 35.0 7.3 63 389-458 6-68 (326)
213 TIGR01683 thiS thiamine biosyn 67.2 28 0.00061 25.0 6.4 61 389-456 4-64 (64)
214 smart00144 PI3K_rbd PI3-kinase 66.6 28 0.00062 28.2 6.9 63 11-73 29-105 (108)
215 KOG2086 Protein tyrosine phosp 66.4 12 0.00025 37.2 5.4 67 77-143 306-376 (380)
216 cd01764 Urm1 Urm1-like ubuitin 66.2 8.9 0.00019 30.3 3.8 60 167-228 23-94 (94)
217 PF08337 Plexin_cytopl: Plexin 66.1 13 0.00027 39.2 5.9 64 390-453 201-290 (539)
218 PRK05863 sulfur carrier protei 66.0 33 0.00073 24.8 6.6 59 161-228 6-65 (65)
219 PRK06944 sulfur carrier protei 65.9 45 0.00097 23.9 7.3 60 389-456 6-65 (65)
220 KOG2086 Protein tyrosine phosp 65.4 10 0.00022 37.7 4.7 69 303-371 304-376 (380)
221 PF00564 PB1: PB1 domain; Int 64.7 29 0.00062 26.3 6.4 45 383-427 4-48 (84)
222 PF02505 MCR_D: Methyl-coenzym 63.5 61 0.0013 27.9 8.4 110 317-440 6-121 (153)
223 COG5100 NPL4 Nuclear pore prot 63.2 20 0.00044 35.6 6.3 70 381-451 1-78 (571)
224 PRK05659 sulfur carrier protei 62.4 52 0.0011 23.7 7.1 61 161-228 6-66 (66)
225 cd01777 SNX27_RA Ubiquitin dom 61.6 21 0.00046 27.6 4.9 39 230-268 3-41 (87)
226 cd06411 PB1_p51 The PB1 domain 61.5 15 0.00032 27.9 4.0 36 240-275 8-43 (78)
227 cd06411 PB1_p51 The PB1 domain 61.5 16 0.00035 27.7 4.2 36 164-199 8-43 (78)
228 PRK08053 sulfur carrier protei 61.5 60 0.0013 23.5 7.5 61 161-228 6-66 (66)
229 PRK07696 sulfur carrier protei 61.4 55 0.0012 23.9 7.0 61 389-456 6-67 (67)
230 cd05992 PB1 The PB1 domain is 61.2 23 0.00049 26.6 5.2 39 237-275 8-47 (81)
231 PRK06944 sulfur carrier protei 61.2 58 0.0013 23.3 7.5 60 161-228 6-65 (65)
232 PF10209 DUF2340: Uncharacteri 61.1 27 0.00059 28.9 5.8 60 88-147 16-107 (122)
233 TIGR02958 sec_mycoba_snm4 secr 60.9 41 0.0009 34.8 8.6 72 381-453 3-81 (452)
234 PF11069 DUF2870: Protein of u 60.6 11 0.00023 29.8 3.2 34 422-455 3-37 (98)
235 KOG2982 Uncharacterized conser 60.1 14 0.00031 35.7 4.5 54 245-298 354-415 (418)
236 KOG2982 Uncharacterized conser 58.5 11 0.00023 36.5 3.4 56 167-222 352-415 (418)
237 KOG4598 Putative ubiquitin-spe 58.4 29 0.00063 37.2 6.7 182 240-423 878-1104(1203)
238 PRK06083 sulfur carrier protei 58.3 65 0.0014 24.9 7.2 61 161-228 24-84 (84)
239 cd01611 GABARAP Ubiquitin doma 58.0 86 0.0019 25.7 8.3 60 394-453 44-107 (112)
240 PF00794 PI3K_rbd: PI3-kinase 57.6 58 0.0013 26.1 7.3 74 380-453 16-103 (106)
241 KOG4261 Talin [Cytoskeleton] 57.5 27 0.0006 37.8 6.5 108 240-350 14-131 (1003)
242 PF10209 DUF2340: Uncharacteri 56.8 25 0.00055 29.1 4.9 56 168-223 21-107 (122)
243 KOG4250 TANK binding protein k 56.3 29 0.00064 37.4 6.5 43 83-125 321-363 (732)
244 cd01777 SNX27_RA Ubiquitin dom 55.7 28 0.0006 27.0 4.7 39 2-40 3-41 (87)
245 KOG3439 Protein conjugation fa 55.7 38 0.00082 27.4 5.5 54 218-277 30-83 (116)
246 cd01768 RA RA (Ras-associating 55.5 90 0.002 23.7 8.7 47 390-436 12-66 (87)
247 cd06396 PB1_NBR1 The PB1 domai 55.4 31 0.00068 26.4 4.9 37 235-273 6-44 (81)
248 PF14732 UAE_UbL: Ubiquitin/SU 54.8 34 0.00074 26.5 5.2 55 395-449 2-66 (87)
249 cd05992 PB1 The PB1 domain is 53.9 40 0.00087 25.2 5.5 43 384-427 4-47 (81)
250 PTZ00380 microtubule-associate 53.4 17 0.00037 30.1 3.4 58 395-452 45-105 (121)
251 PF00564 PB1: PB1 domain; Int 53.2 60 0.0013 24.4 6.4 45 78-123 3-48 (84)
252 TIGR02958 sec_mycoba_snm4 secr 52.9 48 0.001 34.4 7.5 72 154-226 4-82 (452)
253 PF10407 Cytokin_check_N: Cdc1 52.6 30 0.00064 26.0 4.3 61 315-376 3-70 (73)
254 COG2104 ThiS Sulfur transfer p 52.2 94 0.002 22.9 7.6 60 390-456 9-68 (68)
255 cd01768 RA RA (Ras-associating 51.6 45 0.00098 25.5 5.5 35 238-272 12-48 (87)
256 cd01818 TIAM1_RBD Ubiquitin do 51.0 65 0.0014 24.3 5.8 41 384-424 3-43 (77)
257 PF00788 RA: Ras association ( 50.7 49 0.0011 25.3 5.7 33 240-272 18-52 (93)
258 cd06396 PB1_NBR1 The PB1 domai 49.7 51 0.0011 25.3 5.2 30 160-189 7-38 (81)
259 KOG4572 Predicted DNA-binding 49.3 20 0.00044 38.9 4.0 52 161-212 3-56 (1424)
260 PF14451 Ub-Mut7C: Mut7-C ubiq 48.9 79 0.0017 24.2 6.3 53 390-451 22-75 (81)
261 KOG2689 Predicted ubiquitin re 48.7 41 0.00089 31.9 5.5 71 151-221 209-284 (290)
262 PF02505 MCR_D: Methyl-coenzym 47.6 1E+02 0.0023 26.5 7.3 110 13-136 6-121 (153)
263 PF11069 DUF2870: Protein of u 45.9 18 0.00038 28.7 2.3 24 42-66 3-26 (98)
264 cd01766 Ufm1 Urm1-like ubiquit 45.9 1.2E+02 0.0026 22.6 6.4 61 166-226 19-80 (82)
265 PF14732 UAE_UbL: Ubiquitin/SU 45.8 99 0.0022 23.9 6.5 53 248-300 8-69 (87)
266 PF08825 E2_bind: E2 binding d 44.4 29 0.00063 26.8 3.3 55 395-450 1-69 (84)
267 PF06234 TmoB: Toluene-4-monoo 44.2 1.2E+02 0.0027 23.4 6.5 58 394-451 18-83 (85)
268 TIGR03260 met_CoM_red_D methyl 43.6 1.6E+02 0.0035 25.2 7.8 110 317-440 5-119 (150)
269 TIGR03027 pepcterm_export puta 43.4 2.2E+02 0.0048 24.7 11.3 136 287-449 1-160 (165)
270 PF14847 Ras_bdg_2: Ras-bindin 43.2 58 0.0013 26.3 5.0 36 3-38 3-38 (105)
271 cd01764 Urm1 Urm1-like ubuitin 43.1 56 0.0012 25.7 4.9 61 394-456 22-94 (94)
272 PF00794 PI3K_rbd: PI3-kinase 43.0 1.7E+02 0.0037 23.3 8.0 73 75-147 15-101 (106)
273 PF14451 Ub-Mut7C: Mut7-C ubiq 41.7 96 0.0021 23.7 5.8 54 238-300 22-76 (81)
274 cd01787 GRB7_RA RA (RAS-associ 41.6 90 0.002 24.1 5.5 56 79-134 5-67 (85)
275 smart00314 RA Ras association 41.6 86 0.0019 24.1 5.7 36 237-272 14-51 (90)
276 KOG4572 Predicted DNA-binding 41.3 43 0.00092 36.6 4.9 54 237-290 3-58 (1424)
277 cd06410 PB1_UP2 Uncharacterize 41.3 1E+02 0.0022 24.6 6.0 44 386-430 18-63 (97)
278 KOG3439 Protein conjugation fa 39.1 1.1E+02 0.0023 24.9 5.7 39 88-126 46-84 (116)
279 PRK07440 hypothetical protein; 38.9 1.6E+02 0.0034 21.7 7.5 66 153-228 5-70 (70)
280 PF02991 Atg8: Autophagy prote 38.7 1E+02 0.0022 24.9 5.7 59 394-452 36-98 (104)
281 cd01787 GRB7_RA RA (RAS-associ 38.5 1.1E+02 0.0025 23.6 5.6 43 231-273 5-47 (85)
282 cd06398 PB1_Joka2 The PB1 doma 38.4 91 0.002 24.4 5.3 40 236-275 7-52 (91)
283 PF14807 AP4E_app_platf: Adapt 38.2 85 0.0019 25.3 5.2 64 393-457 23-90 (104)
284 TIGR03028 EpsE polysaccharide 38.1 3.4E+02 0.0073 25.3 21.1 177 134-342 1-197 (239)
285 cd06410 PB1_UP2 Uncharacterize 38.0 92 0.002 24.7 5.3 39 6-45 18-56 (97)
286 PTZ00380 microtubule-associate 37.9 45 0.00097 27.7 3.6 73 74-147 25-104 (121)
287 PF10407 Cytokin_check_N: Cdc1 37.8 1.4E+02 0.0031 22.4 5.9 61 391-453 3-71 (73)
288 cd01776 Rin1_RA Ubiquitin doma 37.5 58 0.0013 24.9 3.8 43 393-435 16-63 (87)
289 KOG2689 Predicted ubiquitin re 37.2 95 0.0021 29.5 6.0 71 75-145 209-284 (290)
290 cd06398 PB1_Joka2 The PB1 doma 35.0 1.3E+02 0.0027 23.6 5.6 40 160-199 7-52 (91)
291 KOG0007 Splicing factor 3a, su 34.7 18 0.00038 36.0 0.9 50 83-132 289-339 (341)
292 PF00788 RA: Ras association ( 34.4 1.8E+02 0.0039 22.0 6.6 54 383-436 5-70 (93)
293 smart00314 RA Ras association 34.3 69 0.0015 24.6 4.1 37 2-38 6-43 (90)
294 PF00276 Ribosomal_L23: Riboso 34.0 85 0.0018 24.5 4.5 41 391-431 21-62 (91)
295 cd06397 PB1_UP1 Uncharacterize 34.0 83 0.0018 24.0 4.2 40 235-274 6-45 (82)
296 PRK11130 moaD molybdopterin sy 33.5 2.1E+02 0.0045 21.5 7.2 52 172-228 25-81 (81)
297 PF10787 YfmQ: Uncharacterised 33.1 1.4E+02 0.003 25.4 5.7 87 19-105 23-123 (149)
298 PF10787 YfmQ: Uncharacterised 32.7 1.2E+02 0.0026 25.7 5.3 91 167-257 19-123 (149)
299 PF08783 DWNN: DWNN domain; I 32.1 1.8E+02 0.0039 21.9 5.8 32 385-416 3-36 (74)
300 cd01775 CYR1_RA Ubiquitin doma 32.0 1.7E+02 0.0037 23.2 5.8 40 157-196 7-47 (97)
301 PRK05738 rplW 50S ribosomal pr 32.0 1.2E+02 0.0026 23.8 5.1 40 390-429 20-60 (92)
302 KOG4146 Ubiquitin-like protein 31.9 2.5E+02 0.0055 22.0 7.3 57 399-456 34-101 (101)
303 cd01816 Raf_RBD Ubiquitin doma 31.1 2.1E+02 0.0046 21.5 5.8 43 383-425 2-44 (74)
304 KOG0007 Splicing factor 3a, su 31.0 22 0.00048 35.3 0.9 51 159-209 289-340 (341)
305 cd01611 GABARAP Ubiquitin doma 31.0 2E+02 0.0042 23.6 6.3 57 91-147 45-105 (112)
306 PRK08453 fliD flagellar cappin 30.3 1.6E+02 0.0035 32.1 7.2 86 235-321 134-236 (673)
307 PRK11130 moaD molybdopterin sy 30.2 2.4E+02 0.0052 21.2 7.3 57 395-456 19-81 (81)
308 COG0299 PurN Folate-dependent 29.9 89 0.0019 28.3 4.4 46 286-337 126-172 (200)
309 cd01776 Rin1_RA Ubiquitin doma 29.5 88 0.0019 24.0 3.6 42 316-357 15-61 (87)
310 TIGR00038 efp translation elon 28.6 94 0.002 27.9 4.5 81 8-95 44-126 (184)
311 PF14847 Ras_bdg_2: Ras-bindin 28.5 1.4E+02 0.003 24.2 5.0 45 383-427 3-50 (105)
312 PF03671 Ufm1: Ubiquitin fold 28.5 2E+02 0.0043 21.5 5.2 58 165-222 18-76 (76)
313 cd06397 PB1_UP1 Uncharacterize 28.5 1.3E+02 0.0029 22.9 4.4 39 160-198 7-45 (82)
314 PF14085 DUF4265: Domain of un 28.4 2.3E+02 0.0051 23.2 6.5 55 280-336 17-76 (117)
315 PF02991 Atg8: Autophagy prote 28.2 2.5E+02 0.0054 22.6 6.4 58 91-148 37-98 (104)
316 cd01612 APG12_C Ubiquitin-like 27.7 2.7E+02 0.0059 21.5 6.3 59 394-452 19-81 (87)
317 PF08825 E2_bind: E2 binding d 27.4 1.1E+02 0.0023 23.7 3.9 56 167-223 1-70 (84)
318 PRK11840 bifunctional sulfur c 27.3 2.5E+02 0.0054 27.7 7.3 61 161-228 6-66 (326)
319 KOG2507 Ubiquitin regulatory p 26.6 1.4E+02 0.003 30.4 5.4 78 151-228 313-395 (506)
320 cd01775 CYR1_RA Ubiquitin doma 26.0 2.3E+02 0.005 22.5 5.6 41 232-272 6-47 (97)
321 PF02192 PI3K_p85B: PI3-kinase 25.6 96 0.0021 23.6 3.4 22 89-110 2-23 (78)
322 PF09469 Cobl: Cordon-bleu ubi 25.2 52 0.0011 24.9 1.8 35 181-215 2-39 (79)
323 PRK15078 polysaccharide export 25.2 7.2E+02 0.016 25.1 18.8 212 209-449 83-344 (379)
324 PF11816 DUF3337: Domain of un 25.1 2E+02 0.0043 28.4 6.5 63 393-455 250-330 (331)
325 KOG2561 Adaptor protein NUB1, 24.9 67 0.0015 32.7 3.0 55 168-222 55-109 (568)
326 TIGR03260 met_CoM_red_D methyl 24.8 4.5E+02 0.0098 22.6 8.5 105 170-287 10-118 (150)
327 PF03671 Ufm1: Ubiquitin fold 24.7 3E+02 0.0065 20.5 6.2 58 393-450 18-76 (76)
328 PRK12426 elongation factor P; 24.7 68 0.0015 28.8 2.8 81 8-95 45-127 (185)
329 cd06404 PB1_aPKC PB1 domain is 23.7 1.7E+02 0.0036 22.6 4.3 63 236-298 7-79 (83)
330 PF04023 FeoA: FeoA domain; I 23.6 1.4E+02 0.0029 21.8 3.9 38 206-244 26-63 (74)
331 PRK06347 autolysin; Reviewed 23.4 5E+02 0.011 28.0 9.4 211 89-342 331-569 (592)
332 cd01766 Ufm1 Urm1-like ubiquit 23.3 3.2E+02 0.007 20.4 6.7 63 394-456 19-82 (82)
333 PF02017 CIDE-N: CIDE-N domain 22.7 2.4E+02 0.0053 21.4 5.0 45 401-447 21-67 (78)
334 KOG4147 Uncharacterized conser 22.5 64 0.0014 25.9 1.9 47 328-374 41-111 (127)
335 KOG3483 Uncharacterized conser 22.5 3.3E+02 0.0072 20.4 5.5 60 167-226 31-91 (94)
336 TIGR03636 L23_arch archaeal ri 22.5 2.1E+02 0.0045 21.7 4.6 33 391-423 15-47 (77)
337 PRK00529 elongation factor P; 22.2 1.7E+02 0.0036 26.3 4.8 82 8-96 45-128 (186)
338 COG5100 NPL4 Nuclear pore prot 21.8 2.9E+02 0.0063 27.8 6.6 68 155-223 3-78 (571)
339 PF13180 PDZ_2: PDZ domain; PD 21.0 1.4E+02 0.003 22.3 3.6 57 391-455 15-73 (82)
340 KOG3076 5'-phosphoribosylglyci 20.7 1.4E+02 0.0029 27.0 3.8 43 289-337 138-180 (206)
341 PF11834 DUF3354: Domain of un 20.4 1.1E+02 0.0025 22.6 2.8 42 401-449 26-68 (69)
342 KOG2561 Adaptor protein NUB1, 20.3 81 0.0018 32.2 2.6 52 395-446 54-105 (568)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=3.2e-20 Score=149.98 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=92.3
Q ss_pred cccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC
Q 012714 362 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 441 (458)
Q Consensus 362 ~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i 441 (458)
.+++.+-+++|++.++++.|+|+|++..|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC
Q 012714 442 QKESTLHLVLRLRGG 456 (458)
Q Consensus 442 ~~~~~i~~~~~~~~g 456 (458)
++|++||++++.+||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999887
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=4e-20 Score=149.37 Aligned_cols=99 Identities=41% Similarity=0.597 Sum_probs=93.8
Q ss_pred CCCccccccccccccceeEeecCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcch
Q 012714 53 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (458)
Q Consensus 53 ~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL 132 (458)
.+....+++.+.+++|+++++++.|+|+||+++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (103)
T cd01802 4 KKEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCL 83 (103)
T ss_pred ccCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeEEEEeec
Q 012714 133 ADYNIQKESTLHLVLRLRG 151 (458)
Q Consensus 133 ~~~~i~~~s~i~l~~~~~~ 151 (458)
++|+|.++++||++++.++
T Consensus 84 ~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 84 NDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred HHcCCCCCCEEEEEEecCC
Confidence 9999999999999988655
No 3
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.2e-21 Score=151.00 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.6
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|++|++++.|+|++++|+|||||+++|.+|++++|||+++|+|+|+|++|+|++|+++|+|+..||+|++++++++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998876
No 4
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1e-19 Score=151.76 Aligned_cols=77 Identities=95% Similarity=1.308 Sum_probs=75.0
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCe
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~ 77 (458)
|+|||+++.|++++++++++|||+++|.|||+++|||+++|+|+|.|++|+|+++++||+|+..||+||+++++++.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988763
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.77 E-value=6.7e-19 Score=134.52 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.4
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|++.+|++++++|++++||.+||++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999874
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.76 E-value=1e-18 Score=133.45 Aligned_cols=73 Identities=40% Similarity=0.596 Sum_probs=70.3
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|||||++. ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++++|+++++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 89999999999999999999999999999999999999999999999999999999999998765
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.75 E-value=6.7e-18 Score=128.94 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+||+. +.+.++|+|++||+++|++|+++.|+|+++|+|+|+|+.|+|++||++|+|+++++||++++.+||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 678999999999999999999999999999999999999999999999999999999999999987
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=3.4e-18 Score=131.53 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=72.8
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|||++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988654
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=2.8e-18 Score=131.72 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcE-EEEE-eecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
|+|||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999998764
No 10
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.74 E-value=1.1e-17 Score=127.89 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~ 453 (458)
|+|+||+.+|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|.|+.+|++|+|++|++||++.+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999874
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.73 E-value=1.6e-17 Score=127.80 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+||+.+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887
No 12
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=1.8e-17 Score=127.26 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=71.5
Q ss_pred eeEEEEcCCCcE-EEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714 381 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 381 ~~i~vk~~~g~~-~~~~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~ 455 (458)
|+|+||+.+|+. +.++ +++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|..+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 799999999997 6895 89999999999999999999999999999999999999999999999999999998764
No 13
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=3.2e-17 Score=125.15 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.0
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
|+||++.|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|.|+++|++|+|+++++++++.+..||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998886
No 14
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=1.3e-17 Score=127.30 Aligned_cols=73 Identities=32% Similarity=0.597 Sum_probs=70.5
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|||+++.|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|.+++++++.+++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999987654
No 15
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.4e-18 Score=116.69 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.2
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccccccee
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~ 70 (458)
|.|-|+|++|+.+.++|+|.|+|+.+|++|++++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999984
No 16
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=5.7e-17 Score=124.81 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=73.7
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+|+|++..|+.+.++|++++||++||++|+++.|+++++|+|+|+|+.|+|+ +|++||+++|++||++...++|
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999998887
No 17
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.70 E-value=7.3e-17 Score=124.14 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+|++.+|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|.|+.+|++|++++|++||++.+.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887
No 18
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.70 E-value=6.5e-17 Score=122.19 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=69.2
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
.|.|+|++..|+.+.++|+|++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++||+..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 378999999999999999999999999999999999999999999999999999999999999999999864
No 19
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.69 E-value=1.1e-16 Score=123.09 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|+|++.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.68 E-value=1e-16 Score=123.31 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=72.7
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++++|+++.++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988654
No 21
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.68 E-value=1.6e-16 Score=120.05 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.7
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~ 147 (458)
|.|+|++..|+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|||.+|++|||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999864
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.68 E-value=1e-16 Score=123.31 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
|+|+|++++|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 23
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.68 E-value=2.6e-16 Score=121.35 Aligned_cols=74 Identities=38% Similarity=0.692 Sum_probs=71.6
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~ 454 (458)
|+|+|++.+|+.+.++|++++||.+||++|++..|+ |+++|+|+|+|+.|+|+.+|++|++++|++|+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999999 99999999999999999999999999999999998865
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.67 E-value=1.8e-16 Score=119.07 Aligned_cols=69 Identities=36% Similarity=0.575 Sum_probs=66.6
Q ss_pred EEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 384 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~ 452 (458)
.||..+|+.+.++|+|++||+++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~ 70 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN 70 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999874
No 25
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.67 E-value=9.2e-17 Score=121.31 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.8
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|||++++|+++++++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999753
No 26
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.66 E-value=2.3e-16 Score=119.11 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~ 452 (458)
|+||+..|+.+.++|++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|+|++|+++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999999999999999998764
No 27
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.66 E-value=3.5e-16 Score=120.45 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=72.3
Q ss_pred CeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecc
Q 012714 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (458)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~ 152 (458)
+|+|+||+..|+.+++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++||+.+|++|+++....++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999877654
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.66 E-value=1.9e-16 Score=118.92 Aligned_cols=69 Identities=36% Similarity=0.587 Sum_probs=66.4
Q ss_pred EEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~ 147 (458)
+.||+++|+++++++++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 367899999999999999999999999999999999999999999999999999999999999999975
No 29
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.65 E-value=5e-16 Score=117.76 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=64.8
Q ss_pred ceeEEEEcCCCcEEEE--EecCCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCccccC--CCCCCEEEEEE
Q 012714 380 GMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 451 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~~--~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tL~~~~--i~~~~~i~~~~ 451 (458)
++.++||+++++.+.+ ++++++||++||++|++..+ .++++|||||+||+|+|++||++|. +++|.+||+++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 4789999999999554 45899999999999999875 5689999999999999999999996 99999999986
No 30
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2e-17 Score=127.64 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=73.2
Q ss_pred eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEEEeecCc
Q 012714 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (458)
Q Consensus 229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~ 304 (458)
+.+++++..|+|+++++++++||.+||++|++.+|||+++|+|+|+|+.|+|++|+++|||+..+|||+.+++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999998876
No 31
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-16 Score=108.79 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.9
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~ 450 (458)
|.|.|++++|+.+.++++|+++|+.+|+.++++.|+||.+|||+|.|+.+.|+.|-++|++..|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999974
No 32
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.64 E-value=6.3e-16 Score=119.20 Aligned_cols=72 Identities=39% Similarity=0.725 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCC--CCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gi--p~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|+|+|++.+|+++++++.+++||.++|++|++..|+ |+++|+|+|+|+.|+|+.+|++|++.+++++++.++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999 999999999999999999999999999999998765
No 33
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.63 E-value=8.3e-16 Score=119.13 Aligned_cols=74 Identities=31% Similarity=0.415 Sum_probs=71.5
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE--EEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~L--i~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~ 454 (458)
|+|+|++.+|+.+.+++++++||.+||++|++..|+|+++|+| +|+|+.|.|+.+|++||+++|++||+++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 8999999999999999999999999999999999999999999 9999999999999999999999999999863
No 34
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.63 E-value=1.1e-15 Score=115.20 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.3
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 386 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~ 454 (458)
|+++|+.+.++|++++||.+||++|+++.|+|++.|+|+|+|++|+|+.+|++|+|++|++|++++|+|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999999999999999999999999999999999999999999999988764
No 35
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=7.4e-16 Score=117.18 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.7
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|+|+|++++|+++++++++++||.++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998753
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.9e-15 Score=114.93 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.5
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~ 452 (458)
|+|+||+.+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++||+++|++||++.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999998764
No 37
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.62 E-value=1.9e-15 Score=114.39 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~ 452 (458)
++|+||+.+|+ ..+++++++||++||++|+++.|+++++|+|+|+|+.|.|+++|++||+++|++||++.|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 47899999997 489999999999999999999999999999999999999999999999999999999864
No 38
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.1e-16 Score=129.22 Aligned_cols=77 Identities=95% Similarity=1.308 Sum_probs=74.1
Q ss_pred eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEEEeecCce
Q 012714 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (458)
Q Consensus 229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~~ 305 (458)
|.|+|++..|+++.+++.+++||..+|++|++.+|||+++|+|+|.|+.|+|+++|+||+|+..+|+|++.+++++-
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999988774
No 39
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=1.4e-15 Score=117.89 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=69.9
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEE--EEeeeeccCCCCccccccccccccceeEe
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l--~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|+|+|++.+|+++++++++++||.+||++|++..|+|+++|+| +|+|+.|+|+.+|++|++.++++++++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 7899999999999999999999999999999999999999999 89999999999999999999999999876
No 40
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.59 E-value=2.2e-15 Score=114.06 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.7
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~ 72 (458)
|.|+|++.+|+ .++++++++||.+||++|+++.|+|+.+|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 499999999999999999999999999999999999999999999999999999999864
No 41
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.59 E-value=3.7e-15 Score=113.02 Aligned_cols=72 Identities=25% Similarity=0.271 Sum_probs=64.4
Q ss_pred CeEEEEEecCCcE--EEEEEeCCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcc--cccccceeEEE
Q 012714 76 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 147 (458)
Q Consensus 76 ~~~i~vk~~~g~~--~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~--i~~~s~i~l~~ 147 (458)
++.++||+++|+. |++++++++||.+||++|++..+ .|+++|+|||+||.|+|+.+|++|. +.++.+|||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 4789999999998 55555899999999999999874 5689999999999999999999996 99999999985
No 42
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.58 E-value=1.2e-14 Score=114.34 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=76.5
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+..|.|.|++.+|+...+.|.+++++..||++++++.|+|+++|+|+|+|+.|.++.|+++|++++||+|+++.+.+||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999997
No 43
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=5.3e-15 Score=113.40 Aligned_cols=70 Identities=33% Similarity=0.669 Sum_probs=67.2
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 388 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~ 457 (458)
++|+.+.++|++++||.+||++|+...|+|++.|+|+|+|+.|+|+.+|++|++++|++||++.+.+||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999998874
No 44
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.58 E-value=5.7e-15 Score=111.56 Aligned_cols=67 Identities=36% Similarity=0.561 Sum_probs=64.0
Q ss_pred EEEEcC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEE
Q 012714 383 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHL 449 (458)
Q Consensus 383 i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tL~~~~i~~~~~i~~ 449 (458)
|+|++. .|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|.|+ .+|++|++++|++||+
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 578999 899999999999999999999999999999999999999999987 6899999999999986
No 45
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.56 E-value=9.3e-15 Score=110.11 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.6
Q ss_pred EecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEe
Q 012714 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (458)
Q Consensus 82 k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~ 149 (458)
|+++|+.+++++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+|++|+++.++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999998765
No 46
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.56 E-value=4.2e-15 Score=112.30 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.6
Q ss_pred EEEEcC-CCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCC-CCcccccccccccccee
Q 012714 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (458)
Q Consensus 3 i~~~~~-~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~ 70 (458)
|+|++. +|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .++++|+|.+++++||.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999887 68999999999999874
No 47
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.53 E-value=1.3e-14 Score=111.30 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=65.4
Q ss_pred CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~ 75 (458)
++|++++++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+++|++|++.+++++|+.+++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999988755
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.51 E-value=4.4e-14 Score=107.02 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.7
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
|+|+||+. |+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++|++++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899997 99999999999999999999999999999999999999999999999999999999998863
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.51 E-value=4.7e-14 Score=110.98 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~ 76 (458)
|+|+|++.+|++++++|.+++|+..||++++++.|+|+++|+|+|+|+.|.++.|+.+|++.++++|++++++.++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999887653
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.50 E-value=5.1e-14 Score=106.94 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=65.4
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEe---cCcccCCCcchhhcccccccceeEE
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 146 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d~~tL~~~~i~~~s~i~l~ 146 (458)
|.|.|| ++|+.+++++++++||++||++|++.+|+|+++|+|+| .|+.|+|+.+|++|++++|+.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 468888 79999999999999999999999999999999999996 8999999999999999999999886
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.47 E-value=1.4e-13 Score=104.27 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.2
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~ 147 (458)
|+|+||+. |+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899976 99999999999999999999999999999999999999999999999999999999998863
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.45 E-value=2.6e-13 Score=103.07 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.1
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE---cCeecCCCCCccccCCCCCCEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~---~G~~L~d~~tL~~~~i~~~~~i~~~ 450 (458)
|.|+|+. .|+.|.++|++++||++||++|++..|+|+++|+|+| .|+.|.|+.+|++|++++|+.|+++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4577777 5788999999999999999999999999999999996 9999999999999999999999876
No 53
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=3.3e-13 Score=133.39 Aligned_cols=74 Identities=30% Similarity=0.588 Sum_probs=71.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC---CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~ 454 (458)
|+|+||+.+|+.|.++|++++||.+||++|+...| +++++|+|+|+||+|+|+++|++|+|+++++|+++++++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 78999999999999999999999999999999998 999999999999999999999999999999999998764
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.41 E-value=3.8e-13 Score=102.21 Aligned_cols=70 Identities=29% Similarity=0.380 Sum_probs=62.6
Q ss_pred CeEEEEc--CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeecc-CCCCccccccc-cccccceeE
Q 012714 1 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (458)
Q Consensus 1 ~~i~~~~--~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~-d~~tl~~y~i~-~~sti~l~~ 71 (458)
+.++|+. ..|.+++++|.+++||.+||++|+++.|+|+++|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 1 ~~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 1 LNVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred CEEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3567775 578999999999999999999999999999999999 9999985 67999999998 779999864
No 55
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.38 E-value=6.1e-13 Score=99.39 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=49.4
Q ss_pred ecC-CCcHHHHHHHHHhhc--CC-CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714 397 VES-SDTIDNVKAKIQDKE--GI-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 397 v~~-~~tV~~lK~~i~~~~--~~-~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
|+| ++||.+||++|+++. |+ ++++|+|||+|+.|+|++||++|+|++|++||++.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 444 679999999999996 46 59999999999999999999999999999999865
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.37 E-value=1.5e-12 Score=96.38 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCC
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~ 445 (458)
|+|+|++.+ +.+.++|++++||++||++|+..+|+|++.|+|+|+|+.|.|+.+|++|++++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999998 7889999999999999999999999999999999999999999999999999885
No 57
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.37 E-value=2.2e-12 Score=98.01 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=59.3
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecC-CCCCccccCCC-CCCEEEEEE
Q 012714 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 451 (458)
Q Consensus 386 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~-d~~tL~~~~i~-~~~~i~~~~ 451 (458)
+...|.++.++|+|++||++||++|++++|+|++.|+| |+|+.|. |+.+|++|+++ +|+++|+.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 44568889999999999999999999999999999999 9999985 77999999998 889999864
No 58
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.35 E-value=2.4e-12 Score=93.27 Aligned_cols=74 Identities=27% Similarity=0.382 Sum_probs=68.9
Q ss_pred eeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEec---C--eecCCCCCcccccccCCCeEEEEEeecC
Q 012714 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLRG 379 (458)
Q Consensus 305 ~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~---g--~~L~~~~~l~~y~I~~~~~l~l~~~~~~ 379 (458)
++|.|+.+.+..+++.|+|+.+|+.+|++|...+|++- .|+|.|+ | +.|++.++||+|||+++..|.|+.+.|+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p~ 79 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFPP 79 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCCC
Confidence 47899999999999999999999999999999999988 9999998 2 7888899999999999999999988775
No 59
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.35 E-value=1.7e-12 Score=96.03 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.6
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccc
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~s 65 (458)
|+|+|++.+ +++.++|++++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999999 7999999999999999999999999999999999999999999999999998875
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.34 E-value=1.1e-12 Score=98.12 Aligned_cols=54 Identities=31% Similarity=0.533 Sum_probs=49.5
Q ss_pred eCCCCHHHHHHHHhHHh--CCC-CCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714 94 ESSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 94 ~~~~tV~~lK~~i~~~~--gip-~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~ 147 (458)
+.++||.+||++|+++. |+| +++|||+|+|++|+|+.||++|+|.+|++|||+.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 35889999999999995 575 9999999999999999999999999999999974
No 61
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.32 E-value=1.6e-12 Score=103.65 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=65.5
Q ss_pred CCeEEEEEecCCcEE-EEEEeCCCCHHHHHHHHhHH-----hCCC--CCCeEEEecCcccCCCcchhhcc------cccc
Q 012714 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~~~------i~~~ 140 (458)
+.+.|.++..+|..+ +..+++++||++||++|++. +++| +++|+|||+|++|+|+.||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 457788888899765 67789999999999999944 4566 99999999999999999999999 6667
Q ss_pred cceeEEEEee
Q 012714 141 STLHLVLRLR 150 (458)
Q Consensus 141 s~i~l~~~~~ 150 (458)
.++|++++++
T Consensus 83 ~TmHvvlr~~ 92 (113)
T cd01814 83 ITMHVVVQPP 92 (113)
T ss_pred eEEEEEecCC
Confidence 8999998864
No 62
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.32 E-value=2.7e-12 Score=126.68 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=70.7
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~ 454 (458)
.++|+||+.++ ++.+.|..+.||.+||++|+..+++++++++|||.||+|+|++||..|||++|.+||++++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47999999998 789999999999999999999999999999999999999999999999999999999998854
No 63
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.31 E-value=3.6e-12 Score=119.45 Aligned_cols=75 Identities=37% Similarity=0.643 Sum_probs=72.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~ 455 (458)
|+|+||++.+++|++++.|++||.++|++|+...| +|++.|+|||+|++|+|+.|+.+|+++++++|.+|+.++.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 78999999999999999999999999999999999 8999999999999999999999999999999999998763
No 64
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=3.6e-12 Score=126.04 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.1
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccC---CCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~g---ip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~ 73 (458)
|+|+|+++.|++++|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|.+++++++.+.-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999987743
No 65
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.29 E-value=2.4e-12 Score=102.65 Aligned_cols=73 Identities=29% Similarity=0.414 Sum_probs=63.6
Q ss_pred eEEEEcCCCcEE-EEEeecCccHHHHHHHhh-----cccCCC--CCceEEEEeeeeccCCCCccccc------ccccccc
Q 012714 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (458)
Q Consensus 2 ~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i~-----~~~gip--~~~q~l~~~g~~L~d~~tl~~y~------i~~~sti 67 (458)
.|-|+..+|.-+ +..+.++|||.+||++|+ +++|+| +++|+|+|+|+.|+|++||++|+ +...+|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 456777788544 478889999999999999 666777 99999999999999999999999 8889999
Q ss_pred ceeEeec
Q 012714 68 HLVLRLR 74 (458)
Q Consensus 68 ~l~~~~~ 74 (458)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999765
No 66
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.21 E-value=4.7e-11 Score=89.62 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.8
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 385 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
|+..+|+.+.++++++.||++||++|+...|+|++.|+|+|+|+.|+|+.+|++|++.+|+.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998864
No 67
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.21 E-value=5.8e-11 Score=90.10 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
|+|+|++.+|+.+.+.|.+++++..|++.++++.|+++ +.++|+|+|+.|++++|++++++++||+|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999999864
No 68
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.14 E-value=8.4e-11 Score=90.81 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=57.0
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeec-cCCccccccccCCCCEEEEEEEe
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L-~d~~tL~~y~i~~~s~i~l~~~~ 225 (458)
...++|++++||.+||.+|++++++|+++|+|+++|+.| +|.+||++||+.++|.|.|..+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 467889999999999999999999999999999999999 46789999999999999988753
No 69
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.11 E-value=2.3e-10 Score=85.86 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.4
Q ss_pred EEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~ 147 (458)
|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998764
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.11 E-value=8.9e-11 Score=116.05 Aligned_cols=74 Identities=36% Similarity=0.560 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEe
Q 012714 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~ 149 (458)
..++|+||+.+. .+.+.|..+.||.+||+.|...+++|+++++|||+||+|+|+.||..|||.+|.||||+.+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 358899999988 88999999999999999999999999999999999999999999999999999999999864
No 71
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.11 E-value=1.1e-10 Score=90.15 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=57.6
Q ss_pred eEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCC-CCCcccccccCCCeEEEEEe
Q 012714 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 376 (458)
Q Consensus 316 ~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~-~~~l~~y~I~~~~~l~l~~~ 376 (458)
..++.|++++||.+||..|++++++++..|+|.+.|+.|.| .+||.+|||.++++|+|..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 46788999999999999999999999999999999999998 88999999999999999865
No 72
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.09 E-value=1.4e-10 Score=108.90 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.3
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcccccccceeEEEEee
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~ 150 (458)
|+|+||++.|..|++++.|++||.++|.+|+...| .|+++|+|||+|++|.|+.++.+|++.+++.|.++++-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 78999999999999999999999999999999998 999999999999999999999999999999998887543
No 73
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.06 E-value=5.6e-10 Score=84.53 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.2
Q ss_pred eEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (458)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~ 74 (458)
++++.+..|+++++++.++++|..+|.+|..+.|+|+++|++.+.|+.|.|+.++.+|+|..++++++..++.
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999987654
No 74
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.04 E-value=9.9e-10 Score=83.27 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.7
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCC-CCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~ 147 (458)
|+|+|+..+|+.+.+.|.+++++..|++.++++.|+|+ +..+|+|.|+.|+++.|+++|++.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999998863
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.86 E-value=1.5e-08 Score=79.04 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=57.7
Q ss_pred eEEEEcCC-CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE-EEcCe-----ec-CCCCCccccCCCCCCEEEEEE
Q 012714 382 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK-----QL-EDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 382 ~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~L-i~~G~-----~L-~d~~tL~~~~i~~~~~i~~~~ 451 (458)
.|.|.... ....+.++++++||.+||++++..+|++++.|+| +|.|+ .| +|.++|++|++++|+.||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 44554433 3445666999999999999999999999999999 58888 45 688899999999999999853
No 76
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.83 E-value=3.1e-08 Score=74.79 Aligned_cols=73 Identities=84% Similarity=1.145 Sum_probs=68.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~ 455 (458)
+++++..|+.+.+++.+..+|..+|.+|+...|+++++|++.+.|+.|.|+.++.+|+|..++.+++..+.++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 5677889999999999999999999999999999999999999999999999999999999999999887654
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.79 E-value=2.4e-08 Score=77.81 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.9
Q ss_pred EEEEEecC-CcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE-ecCc-----cc-CCCcchhhcccccccceeEEE
Q 012714 78 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 78 ~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~-----~L-~d~~tL~~~~i~~~s~i~l~~ 147 (458)
.|.|+... .......++++.||.+||++++..+|+|++.|+|. |.|+ .| +|+.+|++|++.+|.+||++-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45565433 33455569999999999999999999999999995 8887 45 688999999999999999874
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.78 E-value=2.5e-08 Score=79.26 Aligned_cols=75 Identities=28% Similarity=0.444 Sum_probs=65.1
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC-------CCCCEEEEEEEecC
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRG 455 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i-------~~~~~i~~~~~~~~ 455 (458)
+.||.. ..++-+++.++.||.+||++|+.-...||++|+|+-.+.+|+|++||+|||+ +..+++-+..|+..
T Consensus 5 lmIrR~-KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d 83 (119)
T cd01788 5 LMIRRH-KTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSD 83 (119)
T ss_pred EEEEec-ceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCC
Confidence 444443 3445688999999999999999999999999999988889999999999999 77999999999887
Q ss_pred CCC
Q 012714 456 GEF 458 (458)
Q Consensus 456 g~~ 458 (458)
|.|
T Consensus 84 ~~f 86 (119)
T cd01788 84 DTF 86 (119)
T ss_pred CCc
Confidence 876
No 79
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.73 E-value=9.9e-08 Score=77.94 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=58.4
Q ss_pred ceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcC-------CCCCceEEEEcCeecCCCCCccccCCCCCC------
Q 012714 380 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 445 (458)
Q Consensus 380 ~~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~-------~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~------ 445 (458)
.+.+.++..+|+ .-.+..++++||.+||+.|-.+.. ..++..||||.||.|+|+.||+++.+..|+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 466778888999 778999999999999999998753 245899999999999999999999987766
Q ss_pred EEEEEEEec
Q 012714 446 TLHLVLRLR 454 (458)
Q Consensus 446 ~i~~~~~~~ 454 (458)
++|++++..
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 688888743
No 80
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.68 E-value=6.3e-08 Score=77.02 Aligned_cols=73 Identities=30% Similarity=0.438 Sum_probs=61.5
Q ss_pred eeEEEeccCc-eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCcccccccc-------CCCCEEEEEEEe
Q 012714 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRL 225 (458)
Q Consensus 154 ~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i-------~~~s~i~l~~~~ 225 (458)
.+|+.....+ ++.+++.+++||.+||++|+.....|+++|+|+..+..|+|++||++||+ +.-.++-|.++.
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 3444444433 57789999999999999999999999999999988889999999999999 667888888774
Q ss_pred c
Q 012714 226 R 226 (458)
Q Consensus 226 ~ 226 (458)
.
T Consensus 82 ~ 82 (119)
T cd01788 82 S 82 (119)
T ss_pred C
Confidence 3
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.64 E-value=1.5e-07 Score=74.08 Aligned_cols=69 Identities=28% Similarity=0.565 Sum_probs=56.3
Q ss_pred eEEEEcCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc----Ce---ec-CCCCCccccCCCCCCEEEEE
Q 012714 382 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 382 ~i~vk~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~----G~---~L-~d~~tL~~~~i~~~~~i~~~ 450 (458)
+|+|..... ...+..++++.||.+||.+++..+|+|++.|+|.+. |. .+ +|.++|.+|++++|+.||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 566655544 578899999999999999999999999999999986 22 23 57889999999999999875
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.62 E-value=1.6e-07 Score=76.73 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.7
Q ss_pred CeEEEEEecCCc-EEEEEEeCCCCHHHHHHHHhHHhC-------CCCCCeEEEecCcccCCCcchhhccccccc------
Q 012714 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (458)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~G~~L~d~~tL~~~~i~~~s------ 141 (458)
.+.|.++..+|. .-++.+++++||.+||+.|...+. ..++..||||.||.|+|+.+|++|.+..++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 466778888999 788999999999999999997642 134668999999999999999999988766
Q ss_pred ceeEEEEee
Q 012714 142 TLHLVLRLR 150 (458)
Q Consensus 142 ~i~l~~~~~ 150 (458)
++||++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 677777653
No 83
>PLN02560 enoyl-CoA reductase
Probab=98.60 E-value=1.2e-07 Score=91.94 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=61.8
Q ss_pred eeEEEEcCCCcEE---EEEecCCCcHHHHHHHHHhhcCC-CCCceEEEEc---C----eecCCCCCccccCCCCCCEEEE
Q 012714 381 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~vk~~~g~~~---~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~~---G----~~L~d~~tL~~~~i~~~~~i~~ 449 (458)
|+|+|+..+|+.+ +++++++.||++||++|+++.+. ++++|||.+. | ..|+|+++|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6789998888886 79999999999999999999986 8999999983 4 4889999999999999999864
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.58 E-value=8.9e-08 Score=92.73 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.6
Q ss_pred CeEEEEcCCCcEE---EEEeecCccHHHHHHHhhcccCC-CCCceEEEEe---e----eeccCCCCccccccccccccce
Q 012714 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (458)
Q Consensus 1 ~~i~~~~~~g~~~---~~~v~~~dtv~~~K~~i~~~~gi-p~~~q~l~~~---g----~~L~d~~tl~~y~i~~~sti~l 69 (458)
|+|.|++.+|+++ +++++++.||++||.+|+++.++ ++++|+|.+. | ..|+|+++|.+|++.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999998 79999999999999999999986 8999999983 4 3789999999999999998665
No 85
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.3e-08 Score=102.24 Aligned_cols=73 Identities=34% Similarity=0.592 Sum_probs=69.3
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (458)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~ 455 (458)
.++||+++.++.+|.+...+||.+||..|.++.+++.+.|||||+|++|.|++++.+|+| +|-+|||+-|-.+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 589999999999999999999999999999999999999999999999999999999999 9999999877443
No 86
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.57 E-value=3e-07 Score=67.07 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=63.3
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEec---C--cccCCCcchhhcccccccceeEEEE
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 148 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---G--~~L~d~~tL~~~~i~~~s~i~l~~~ 148 (458)
++|+||...+.++++.|+|..+|.++|++|....|++- .|||.|. | +.|.+..+|++|||-.+..|.|+..
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 47899999999999999999999999999999999987 9999986 2 4578999999999998888877654
No 87
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.2e-08 Score=103.17 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=69.3
Q ss_pred EEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEee
Q 012714 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (458)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~ 150 (458)
.|+|||++.++.++.+...+||.++|+.|+++.+|+.+.||+||.|++|.|++++.+|++ +|-+|||+.+++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 489999999999999999999999999999999999999999999999999999999999 999999998864
No 88
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.56 E-value=3.3e-07 Score=72.06 Aligned_cols=71 Identities=27% Similarity=0.543 Sum_probs=56.6
Q ss_pred eEEEEEecCC--cEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEec----C---ccc-CCCcchhhcccccccceeEE
Q 012714 77 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLV 146 (458)
Q Consensus 77 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----G---~~L-~d~~tL~~~~i~~~s~i~l~ 146 (458)
+.|+|..... ......++++.||.+||.+++..+|+|++.|+|.+. + ..+ +|..+|.+|++.+|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 3466655544 478889999999999999999999999999999876 1 123 57899999999999999876
Q ss_pred E
Q 012714 147 L 147 (458)
Q Consensus 147 ~ 147 (458)
-
T Consensus 82 D 82 (87)
T PF14560_consen 82 D 82 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 89
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.44 E-value=5.8e-07 Score=68.92 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=47.2
Q ss_pred cCCCcHHHHHHHHHhhcC-CCCCceEEE--EcCeecCCCCCccccCCCCCCEEEE
Q 012714 398 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 398 ~~~~tV~~lK~~i~~~~~-~~~~~q~Li--~~G~~L~d~~tL~~~~i~~~~~i~~ 449 (458)
+++.||.+||+.|++..+ +++++|+|. +.|+.|.|+.+|++||+++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999999976 589999985 7899999999999999999999875
No 90
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.39 E-value=5.7e-07 Score=69.07 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=45.0
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc---Ceec--CCCCCccccCCCCCCEEEE
Q 012714 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~---G~~L--~d~~tL~~~~i~~~~~i~~ 449 (458)
.+.|-|.|++.+|.. .++++|++|+.+|+++|++..+++.+.|.|..+ ...| .+.+||+++|++.||.|++
T Consensus 2 ~~~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 2 ASSMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ----EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred CccEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 357889999999875 689999999999999999999999998887543 2345 4688999999999999976
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.24 E-value=2.7e-06 Score=65.20 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.5
Q ss_pred eCCCCHHHHHHHHhHHhC-CCCCCeEEE--ecCcccCCCcchhhcccccccceeE
Q 012714 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (458)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~G~~L~d~~tL~~~~i~~~s~i~l 145 (458)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|++||+.+|+++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578999999999999875 689999995 8899999999999999999998765
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.23 E-value=2e-06 Score=66.09 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=43.2
Q ss_pred cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEec---Ceec--cCCccccccccCCCCEEEEE
Q 012714 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~---g~~L--~d~~tL~~y~i~~~s~i~l~ 222 (458)
..|-|.|+..+| ...+++++++|+.+|+++|++..++|.+.|.|..+ ...+ .++.+|+++|++.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 456677777765 57789999999999999999999999999988732 2344 57899999999999999764
No 93
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.5e-05 Score=62.28 Aligned_cols=80 Identities=16% Similarity=0.399 Sum_probs=73.1
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~ 457 (458)
+..+++.|+.-++....|.|..+.+...|++.-+++.|++....|++|+|+.+.+.+|.++++.++||.|.++.-+-||.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 34567788887788889999999999999999999999999999999999999999999999999999999988877773
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.20 E-value=7.7e-06 Score=59.02 Aligned_cols=66 Identities=45% Similarity=0.659 Sum_probs=60.3
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 386 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
+..+++...+.+.++.|++++|+.++++.|.+++.+.|.++|..+.+...+.++++.+++.|++..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 334788889999999999999999999999999999999999999999999999999999998753
No 95
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.97 E-value=2.9e-05 Score=55.87 Aligned_cols=66 Identities=45% Similarity=0.659 Sum_probs=59.7
Q ss_pred EecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (458)
Q Consensus 82 k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~ 147 (458)
+..+|....+.+.+..|+.++|+++.++.|.+++.+.|+++|..+.+...+.+|++.+++.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 334788889999999999999999999999999999999999999998888899999999998763
No 96
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.3e-06 Score=59.07 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=62.2
Q ss_pred eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEE
Q 012714 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~ 222 (458)
++.+...-|+...+.+.+++||+++|..|+.++|-.++...|--.+...+|.-+|++|.|.+|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 445566678999999999999999999999999999999999988889999999999999999888765
No 97
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.5e-06 Score=58.97 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=62.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~ 450 (458)
+++.+.+.-|+...+.+.+++||+++|+.|+++.|-.++..+|---+..++|.-+|++|.|.+|-.+.+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 4567778889999999999999999999999999999998888766778999999999999999877553
No 98
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=9.3e-05 Score=57.85 Aligned_cols=77 Identities=17% Similarity=0.449 Sum_probs=70.7
Q ss_pred eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCe
Q 012714 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (458)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~ 229 (458)
+.+.|+..++....+.|..+++...|+..-+++.|++.+..|+.|+|+.+.+..|-++.++.+|+.|.++....+|.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 45667777788889999999999999999999999999999999999999999999999999999999998877764
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=3.6e-05 Score=72.02 Aligned_cols=70 Identities=30% Similarity=0.598 Sum_probs=61.4
Q ss_pred eEEEEcC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714 382 QIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 382 ~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
.+.|++. ....+.++|+.+.+|.+||+.++.+.|+|+++.++||.||+|.|+.|+..+.+..-+.+|++.
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 3445444 345688999999999999999999999999999999999999999999999998889998873
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00011 Score=68.90 Aligned_cols=64 Identities=33% Similarity=0.643 Sum_probs=58.3
Q ss_pred CcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEE-EEe
Q 012714 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (458)
Q Consensus 86 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~-~~~ 149 (458)
...++++|+.+..|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-+.+|++ ++|
T Consensus 13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 13 SHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred cCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 3568899999999999999999999999999999999999999999999999888988877 343
No 101
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.9e-05 Score=73.68 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=65.7
Q ss_pred eEEEEEecCCcEEEEE-EeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEE
Q 012714 77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~ 148 (458)
..|.|| +.|+.++++ ++.++|+..+|+++...+|+||++|++.+.|+.+.|+-.+....|++|.+++++-.
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence 357777 889999998 99999999999999999999999999999999999998888999999999999864
No 102
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=8.7e-05 Score=56.32 Aligned_cols=79 Identities=16% Similarity=0.360 Sum_probs=70.7
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~ 457 (458)
..+.+.|-..+|..+-+.+..+.+...|.+..+.+.|-..+..|++|+|+.++-++|..|++.++++.|.++..+-||+
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 3456677777889999999999999999999999999999999999999999999999999999999997766666664
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.47 E-value=0.00029 Score=51.52 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.5
Q ss_pred ccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEE
Q 012714 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (458)
Q Consensus 235 ~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l 297 (458)
..++++..+.+.++.++.++-+..|.++|++++.+.|.|+++.++-+.+++..|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 567899999999999999999999999999999999999999999999999999999998865
No 104
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.44 E-value=0.00015 Score=55.75 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=52.4
Q ss_pred CeEEEEcCCC-cEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEee--eeccCCCCcccccc
Q 012714 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNI 61 (458)
Q Consensus 1 ~~i~~~~~~g-~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g--~~L~d~~tl~~y~i 61 (458)
|++|++...- .++.+..+++.||.++|+++..-..=|++.|+|+-.. ..|+|++||.|++.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 6788888554 4777999999999999999988888899999999843 45799999999964
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.42 E-value=0.00019 Score=55.16 Aligned_cols=53 Identities=30% Similarity=0.409 Sum_probs=46.8
Q ss_pred ceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEe-cC-eeccCCccccccccCC
Q 012714 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK 215 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~-~g-~~L~d~~tL~~y~i~~ 215 (458)
.++.+..+++.||.+||.++.....-|+++|+|.. .. +.|+|.+||+++|...
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 45778999999999999999999999999999996 33 6789999999998765
No 106
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0012 Score=65.78 Aligned_cols=72 Identities=24% Similarity=0.408 Sum_probs=63.7
Q ss_pred eEEEEcCCCcEEEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714 382 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (458)
Q Consensus 382 ~i~vk~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~ 454 (458)
.|.||. .|+.|.++ ++.++|+..||+++.+.+|++|++|++.+.|..+.|+--+...+|++|.+++++-...
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 455555 47788888 9999999999999999999999999999999999999899999999999998875543
No 107
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.05 E-value=0.0022 Score=46.98 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.0
Q ss_pred eccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEE
Q 012714 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 159 ~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l 221 (458)
..+++...+.+.|++++.++-+....++|++++...|.|+++.++-+.++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 356788999999999999999999999999999999999999999999999999999998875
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.00 E-value=0.002 Score=49.52 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=50.3
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---C---ceEEE-EcCeecCCCCCccccCCCCCCEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~---~---~q~Li-~~G~~L~d~~tL~~~~i~~~~~i~~ 449 (458)
++|+|...+|+.+.+.+..+-+|.+|...+.+..+.+. . .-.|. -+|..|++++||++++|.+|+.+++
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 46788887778999999999999999999999888533 2 23444 4699999999999999999999976
No 109
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.97 E-value=0.006 Score=47.12 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=60.5
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCc-eEEE--EcCeecCCC--CCccccCCCCCCEEEE
Q 012714 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL 449 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~-q~Li--~~G~~L~d~--~tL~~~~i~~~~~i~~ 449 (458)
++...|.||.++|+.+.-...+++||.+|..-|......+... ..|+ |-.+.+.+. +||++.++.++++|++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 3557899999999999999999999999999999988776664 6675 456788754 5999999999999865
No 110
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.96 E-value=0.0019 Score=51.43 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=44.1
Q ss_pred EEEEcCCC-cEEEEEec--CCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCcccc
Q 012714 383 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 439 (458)
Q Consensus 383 i~vk~~~g-~~~~~~v~--~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tL~~~ 439 (458)
|+|++.++ ....+++. .+.||..||++|.+..+ ..-..+||||+|+.|.|...|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 44555442 33567766 88999999999999984 456789999999999999877654
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.89 E-value=0.004 Score=53.89 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=49.5
Q ss_pred CeEEEEcCCC----cEEEEEeecCccHHHHHHHhhcccCCCCCce-EEEEe-eeecc--CCCCccccccc
Q 012714 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQ 62 (458)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q-~l~~~-g~~L~--d~~tl~~y~i~ 62 (458)
|+|||.+++| .++.+.+.++.||.+|+..|....++|...| .|++. ++.|. ++..+..+.-.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~ 70 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSS 70 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccC
Confidence 7999999999 6999999999999999999999999998884 56664 55663 34445555443
No 112
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.84 E-value=0.003 Score=50.32 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=44.9
Q ss_pred EEEEecC-CcEEEEEEe--CCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcc
Q 012714 79 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 136 (458)
Q Consensus 79 i~vk~~~-g~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~ 136 (458)
|+|+..+ -.+++++++ ...||..||..|.+..+ ..-.++||||+|+.|.|+..|+..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 4455444 345777777 78999999999999873 4456789999999999988887653
No 113
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.81 E-value=0.0033 Score=48.28 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=48.5
Q ss_pred eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCC------eEEE-ecCeeccCCccccccccCCCCEEEE
Q 012714 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~------q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l 221 (458)
+|+|...+|+.+.+.++.+.+|++|...+.+..+.+... ..|. -+|..|+++.||+++||.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 456665456889999999999999999999988864322 3455 6789999999999999999999876
No 114
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.66 E-value=0.013 Score=50.83 Aligned_cols=76 Identities=30% Similarity=0.533 Sum_probs=59.2
Q ss_pred eeEEEEcCCC----cEEEEEecCCCcHHHHHHHHHhhcCCCCCce-EEEE-cCeec--CCCCCccccCCCCCC----EEE
Q 012714 381 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKES----TLH 448 (458)
Q Consensus 381 ~~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q-~Li~-~G~~L--~d~~tL~~~~i~~~~----~i~ 448 (458)
|+|+|.+.+| .++.+.++++.||.+|+..|.+..+.+...| .|.+ .|+.| .++..++++.-.+.+ .++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5789999999 6889999999999999999999999988874 4555 35555 456667776544443 677
Q ss_pred EEEEecCC
Q 012714 449 LVLRLRGG 456 (458)
Q Consensus 449 ~~~~~~~g 456 (458)
+..+..||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 88888887
No 115
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.51 E-value=0.018 Score=42.39 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=56.9
Q ss_pred eeEEE--EcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-----CCCceEEEEcCeecCCCCCccccCCCCCCEEEE
Q 012714 381 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGI-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~v--k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-----~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~ 449 (458)
|+|+| +..+|.+|.+.++.-.++..|-..+.+...+ +-+..+..-.++.|.+++.|.+|+|.+||.+.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 45555 5567999999999999999998887776653 235677888899999999999999999999854
No 116
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.48 E-value=0.018 Score=44.40 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=59.4
Q ss_pred ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCC-eEEE--ecCeeccCC--ccccccccCCCCEEEEE
Q 012714 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (458)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~y~i~~~s~i~l~ 222 (458)
...|.|+.++|+.+.-...+++||.+|.+.|......+... ..|. |..+.+.++ .||++.|+.+.++|.+.
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 45678888999999999999999999999999888777665 7776 677777543 69999999999988763
No 117
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.27 E-value=0.033 Score=42.65 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=55.2
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEE--EcCeecCC-CCCccccCCCCCCEE
Q 012714 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 447 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li--~~G~~L~d-~~tL~~~~i~~~~~i 447 (458)
+..+|.||.++|+.+.-....++||++|.+-+..+.+- ......|. |-.+.|.| +.||.|.|+.+..++
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 34689999999999999999999999999999987643 33556665 55787764 789999999865444
No 118
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.22 E-value=0.026 Score=43.38 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=57.9
Q ss_pred ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeeccC---CccccccccCCCCEEEE
Q 012714 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (458)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~s~i~l 221 (458)
...|.|+.++|+.+.-....++|+++|.+.+....+.+.....|. |..+.+.+ +.||.+.|+.+.+++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 356788899999999999999999999999977677766777877 66777753 57999999998888765
No 119
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.09 E-value=0.041 Score=42.27 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=56.9
Q ss_pred CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccCC---CcchhhcccccccceeE
Q 012714 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~~~i~~~s~i~l 145 (458)
+...|.||.++|+.+.-...+++|+.++.+-+....+.+...-.|+ |-.+.+.+ +.||.+.++.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3457889999999999999999999999999976666655566666 55677753 47999999988887754
No 120
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.012 Score=52.43 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=56.6
Q ss_pred cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeE
Q 012714 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (458)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l 145 (458)
.+++.+.+.+...+||.++|.++++..|+.+..|+++|+|+.|-|...|..|+|..|+...+
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 36788999999999999999999999999999999999999999999999999999965443
No 121
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0083 Score=45.78 Aligned_cols=75 Identities=16% Similarity=0.361 Sum_probs=65.3
Q ss_pred eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecC
Q 012714 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~ 227 (458)
+.+.|...+|.++.+.+..+++...|....+.+.|=..+..|+.|+|+.++-++|.+++++.+++.|..+....|
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvG 99 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVG 99 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhc
Confidence 455666677888999999999999999999999999999999999999999999999999999988765544333
No 122
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.73 E-value=0.097 Score=39.81 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=52.6
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecCC---CCCccccCCCCCCEE
Q 012714 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLADYNIQKESTL 447 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d---~~tL~~~~i~~~~~i 447 (458)
..+|.||.++|+.++-...+++||.+|.+-|.....- .....|+. -.+.+.+ +.||.+.|+.++.++
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 3578999999999999999999999999999876543 45566654 4677754 789999999954444
No 123
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.73 E-value=0.1 Score=40.49 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=58.0
Q ss_pred cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC--eecC--------CCCCccccCCCCCCEE
Q 012714 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTL 447 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G--~~L~--------d~~tL~~~~i~~~~~i 447 (458)
++..+|.||.++|+...-....++||++|..-+.. .+..++...|+.+= +.+. .+.||.+.|+.+..++
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 45678999999999998899999999999999964 45566788888764 7775 3679999999988777
Q ss_pred EE
Q 012714 448 HL 449 (458)
Q Consensus 448 ~~ 449 (458)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 43
No 124
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.66 E-value=0.062 Score=41.16 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=55.3
Q ss_pred eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeeccC---CccccccccCCCCEEEE
Q 012714 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (458)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~s~i~l 221 (458)
..|.|+.++|+.+.-..+.++|+++|.+.|....+-+ ....|+ |-.+.+.+ +.||.+.|+.+..+|.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4677888999999999999999999999998765543 556666 77788853 58999999999888765
No 125
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.61 E-value=0.074 Score=40.47 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=52.5
Q ss_pred eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc---CCccccccccCCCCEEEE
Q 012714 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (458)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~i~~~s~i~l 221 (458)
..|.|+.++|+.+.-....++|+++|.+.|.....- ...+.|. |-.+.+. .+.||.+.|+.+ +.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 457788899999999999999999999999876543 4556666 6677774 488999999994 54433
No 126
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.023 Score=50.77 Aligned_cols=63 Identities=29% Similarity=0.488 Sum_probs=56.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCC--CEEEEEE
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLVL 451 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~--~~i~~~~ 451 (458)
+++.|.+.+..-+|+.++|..+.+..|+++-.|+++|+|..|-|...|..|+++.| -++.+.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviV 219 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIV 219 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEe
Confidence 57778999999999999999999999999999999999999999999999999999 4554444
No 127
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.38 E-value=0.1 Score=39.90 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=52.4
Q ss_pred CeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCC-CCCeEEE--ecCcccC-CCcchhhcccccccc
Q 012714 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLE-DGRTLADYNIQKEST 142 (458)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~G~~L~-d~~tL~~~~i~~~s~ 142 (458)
.-+|.|+..+|+.+...++.++||.+|.+-+....+-+ ...-.|. |-.+.|. ++.||.+.|+.+.+.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 35688999999999999999999999999999875432 2345565 6678775 478999999986443
No 128
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.22 E-value=0.11 Score=39.69 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=54.4
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccCC---CcchhhcccccccceeE
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~~~i~~~s~i~l 145 (458)
..|.||.++|+.+.-..+.++|+.++.+.+....+-+ ..-.|+ |-.+.+.+ +.||.+.|+.+.+++.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4688999999999999999999999999998765433 345565 56777753 58999999998887765
No 129
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.0089 Score=56.99 Aligned_cols=75 Identities=24% Similarity=0.326 Sum_probs=55.6
Q ss_pred cCceeEEEEcCCCcE--EEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCCC--CCCEEEEEE
Q 012714 378 RGGMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVL 451 (458)
Q Consensus 378 ~~~~~i~vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tL~~~~i~--~~~~i~~~~ 451 (458)
+-+..+.||..+.+. ..|..+..+||++||..++.-+.- -+.+|||+|+||.|.|.++|.|.=.+ ...+.|+++
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 345667778877653 466677899999999999988753 34799999999999999999987432 234445444
Q ss_pred E
Q 012714 452 R 452 (458)
Q Consensus 452 ~ 452 (458)
.
T Consensus 87 n 87 (391)
T KOG4583|consen 87 N 87 (391)
T ss_pred C
Confidence 3
No 130
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.96 E-value=0.16 Score=37.56 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=54.7
Q ss_pred EEEEccCCceEEEeecccchHHHHHHHHhhhcCCC--C---CceEEEecCcccCCCCcccccccCCCCeEEE
Q 012714 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--P---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (458)
Q Consensus 231 I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip--~---~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l 297 (458)
+...+.+|.++.+.+....++..|-..+.+.+.+. + .+.+.+-+++.+.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 44567889999999999999999998888766432 2 3356777899999999999999999998764
No 131
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.94 E-value=0.14 Score=48.53 Aligned_cols=108 Identities=17% Similarity=0.342 Sum_probs=76.9
Q ss_pred EEeecCCCcHHHHHHhhhcccCCCCCCeeEEec----C--eecCCCCCcccccccCCCeEEEEEeecC------------
Q 012714 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTLHLVLRLRG------------ 379 (458)
Q Consensus 318 ~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~----g--~~L~~~~~l~~y~I~~~~~l~l~~~~~~------------ 379 (458)
.+.|...++|.++-..|.+..|+|++..-+.|. + ..++.+.+++...+.+|++|.+....+.
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 377899999999999999999999987777776 3 5677799999999999999999985542
Q ss_pred --------ceeEEEEcC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE
Q 012714 380 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (458)
Q Consensus 380 --------~~~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~ 425 (458)
.+.|.++.. ++..|++.++...|-.+|-++|+++.+++|...||.-
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 156666553 3458999999999999999999999999999888753
No 132
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.88 E-value=0.17 Score=38.84 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=58.3
Q ss_pred eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeec---cCCccccccccCCCCEEEEE
Q 012714 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~y~i~~~s~i~l~ 222 (458)
-+|.|+.++|+...-....++++++|...+.. .|.+++.+.|+ |--+.+ +.+.||.+.|+.+..+|.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46788999999999999999999999999998 57788989888 666666 33589999999999888664
No 133
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.86 E-value=0.17 Score=39.26 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=55.4
Q ss_pred ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc--------CCccccccccCCCCEEEE
Q 012714 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL 221 (458)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~--------d~~tL~~y~i~~~s~i~l 221 (458)
..+|.|+.++|+.+.-....++|+++|...|... +-.++.+.|. |--+.+. .+.||.+.|+.+..+|.+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 4577888999999988899999999999999654 4456778888 4447774 367999999998887755
No 134
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.77 E-value=0.2 Score=38.45 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=57.6
Q ss_pred ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc---CCccccccccCCCCEEEE
Q 012714 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (458)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~i~~~s~i~l 221 (458)
..+|.|+.++|....-....++++++|...+... |.++..++|. |--+.+. .+.||.+.|+.+..+|.+
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 3567888999999999999999999999999875 7777888887 6677663 357999999999888765
No 135
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.47 E-value=0.26 Score=38.25 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=46.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE----cCe-ecCC-CCCccccCCCCCCEEEEEEEecCCCC
Q 012714 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGK-QLED-GRTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 391 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~----~G~-~L~d-~~tL~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
...+-..+..+||..+.+.+.+.+.+ .++-||-- ++. .|.+ ..|+.|.++.+|-+|.+-.|..+|.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence 45678899999999999999999999 66677743 222 4654 46999999999999988889999988
No 136
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.20 E-value=0.093 Score=48.17 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=50.0
Q ss_pred eeEEEEcCCCc-EEE-EEecCCCcHHHHHHHHHhhc-CCCCCceEEEE----cCeecCCCCCccccCCCCCCEEEE
Q 012714 381 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 381 ~~i~vk~~~g~-~~~-~~v~~~~tV~~lK~~i~~~~-~~~~~~q~Li~----~G~~L~d~~tL~~~~i~~~~~i~~ 449 (458)
|.|++.+.++. ..+ ...+...|+.|+++.+.++. .+.+..+|+-+ .|+.|.|+.+|++|+...|++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 56777666542 233 55677889999997777754 46664444433 699999999999999999988853
No 137
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.62 E-value=0.49 Score=36.13 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=42.1
Q ss_pred eEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEE
Q 012714 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 240 ~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~ 298 (458)
.+...++-...+..||..++.+.+++.+.+.+...+..|+++++|.+.+++-..++.++
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 34555666788999999999999999999999888877999999999999999998876
No 138
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.61 E-value=0.58 Score=35.96 Aligned_cols=69 Identities=16% Similarity=0.326 Sum_probs=57.2
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccC---CCcchhhcccccccceeEE
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~---d~~tL~~~~i~~~s~i~l~ 146 (458)
-+|.||.++|+...-....++++.+|-..+.. .|.+++...|+ |--+.+. .+.||.+.|+.+.+++.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46889999999999999999999999999988 57788888887 5556653 3589999999988887653
No 139
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=93.54 E-value=0.93 Score=42.93 Aligned_cols=118 Identities=18% Similarity=0.366 Sum_probs=80.4
Q ss_pred EEEEc--CCCcEEE----EEeecCccHHHHHHHhhcccCCCCCceEEEEee------eeccCCCCcccccccccccccee
Q 012714 3 IFVKT--LTGKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLV 70 (458)
Q Consensus 3 i~~~~--~~g~~~~----~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g------~~L~d~~tl~~y~i~~~sti~l~ 70 (458)
||+|- ...+++. +-|..+++|.++=..|.+..|+|++...++|.- ..++.+.|+....+++|+.|-+-
T Consensus 71 lFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ 150 (249)
T PF12436_consen 71 LFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQ 150 (249)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEE
T ss_pred EEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEE
Confidence 56664 2333443 678999999999999999999999998888864 23677899999999999988776
Q ss_pred Eeec--------------------CCeEEEEEec---CCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE
Q 012714 71 LRLR--------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (458)
Q Consensus 71 ~~~~--------------------~~~~i~vk~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (458)
.... ..+.|.++.. ++..|+++++...|-.+|-++|+++.|+.|...||.
T Consensus 151 ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 151 RAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp E--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 6432 1256666653 345799999999999999999999999999888876
No 140
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.51 E-value=0.68 Score=35.51 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=56.8
Q ss_pred CeEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEE--ecCccc---CCCCcccccccCCCCeEEEE
Q 012714 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 228 ~~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~--~~g~~l---~d~~tL~~y~I~~~~ti~l~ 298 (458)
...|.++.++|.++.-....++++++|..-+... |.++..+.|+ |--+.+ +.+.||.+-|+.+..+|.+.
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 4567788889999999999999999999999874 7778889887 444444 34679999999999888764
No 141
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.46 E-value=0.15 Score=38.68 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=47.1
Q ss_pred ecCCCcHHHHHHHHHhhcC-CCCCceEEEEcCeecCCCCCcccc-CCCCCCEEEEEE
Q 012714 397 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVL 451 (458)
Q Consensus 397 v~~~~tV~~lK~~i~~~~~-~~~~~q~Li~~G~~L~d~~tL~~~-~i~~~~~i~~~~ 451 (458)
|.++++|.++++.+..... ..-....|.++|+.|+|...|+++ ++++|+.+.++-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 6789999999999998865 455677899999999999999998 588999998753
No 142
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.38 E-value=0.48 Score=43.72 Aligned_cols=123 Identities=21% Similarity=0.297 Sum_probs=62.7
Q ss_pred cEEEEEEeCCCCHHHHHHHHhHHhCCCCC---CeEEE--ecCcc---cCCCcchhhcccccccceeEEEEe------e--
Q 012714 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRL------R-- 150 (458)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~q~L~--~~G~~---L~d~~tL~~~~i~~~s~i~l~~~~------~-- 150 (458)
+.+.+-|+.+.||.+|.++++++.+++.+ ..|+. ++++. +..+.++.+. .+...+.+-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35788899999999999999999998765 33433 55543 6667777765 222222221111 1
Q ss_pred --cceeeEEEec-------cCceEeeecCCCCcHHHHHHHHHHHhCCCC---CCeEEE--ecC-----eeccCCc--ccc
Q 012714 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAG-----KQLEDGR--TLA 209 (458)
Q Consensus 151 --~~~~i~v~~~-------~g~~~~~~v~~~~tV~~LK~~I~~~~gip~---~~q~L~--~~g-----~~L~d~~--tL~ 209 (458)
+.+.|.|-.+ .|-.+.+.|.++.|..++|++|+++.|+|- +..++. -.+ ..++|+. .|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~ 191 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILF 191 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhh
Confidence 2233444433 256788899999999999999999999984 344444 233 4566654 444
Q ss_pred cc
Q 012714 210 DY 211 (458)
Q Consensus 210 ~y 211 (458)
+-
T Consensus 192 ~~ 193 (213)
T PF14533_consen 192 DE 193 (213)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 143
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.043 Score=52.46 Aligned_cols=73 Identities=26% Similarity=0.376 Sum_probs=55.8
Q ss_pred CeEEEEEecCC--cEEEEEEeCCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcccc--cccceeEEEE
Q 012714 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLR 148 (458)
Q Consensus 76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~i~--~~s~i~l~~~ 148 (458)
+..+.||..+. +..++..+..+||++||..++...- --..+|||+|.||.|.|...+.+.-++ ...++||+..
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn 87 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN 87 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 45677887765 4677888889999999999987653 234679999999999999999987654 3345666553
No 144
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.10 E-value=0.6 Score=43.08 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=59.5
Q ss_pred ceEeeecCCCCcHHHHHHHHHHHhCCCCC---CeEEE--ecCee---ccCCccccccccCCCCEEEEEEEe------c--
Q 012714 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRL------R-- 226 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~---~q~L~--~~g~~---L~d~~tL~~y~i~~~s~i~l~~~~------~-- 226 (458)
+.+.+-++.+.||++|.+.++.+.+++.+ ..++. ++++. +..+.++... .+...+.+-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999999765 44544 56654 4667777765 333344333111 1
Q ss_pred --CCeEEEEEc-------cCCceEEEeecccchHHHHHHHHhhhcCCCCCc
Q 012714 227 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (458)
Q Consensus 227 --~~~~I~V~~-------~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~ 268 (458)
+..-|.|.- ..|-.+.+.|.+++|++++|..|++++|+|-..
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 112233322 236788899999999999999999999998765
No 145
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.77 E-value=0.65 Score=35.29 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=51.2
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEE----cC--eecCCCCCccccCCC--CCCEEEEE
Q 012714 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLV 450 (458)
Q Consensus 385 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~----~G--~~L~d~~tL~~~~i~--~~~~i~~~ 450 (458)
|+.++|+..+++|+++.|+.+|=++|+.+.|+ +.+-.-|.| +| .-|+.+++|.++... ...++++.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 57889999999999999999999999999997 556677888 22 246788899998776 34444443
No 146
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.45 E-value=0.72 Score=35.04 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=48.2
Q ss_pred EEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEe----cCc--ccCCCCcccccccCCCCe
Q 012714 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AGK--QLEDGRTLADYNIQKEST 294 (458)
Q Consensus 233 V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~----~g~--~l~d~~tL~~y~I~~~~t 294 (458)
|..++|...+++++++.|+++|-++|+++.||.... +-|.+ +|. -|+.++++..+....+..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP 69 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence 456788999999999999999999999999988766 55777 111 267888999998773443
No 147
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.82 E-value=0.32 Score=44.80 Aligned_cols=69 Identities=28% Similarity=0.371 Sum_probs=48.7
Q ss_pred eeeEEEeccC-ceEe-eecCCCCcHHHHHHHHHH-HhCCCCCCeEEE----ecCeeccCCccccccccCCCCEEEE
Q 012714 153 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQD-KEGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 153 ~~i~v~~~~g-~~~~-~~v~~~~tV~~LK~~I~~-~~gip~~~q~L~----~~g~~L~d~~tL~~y~i~~~s~i~l 221 (458)
|.|++...++ ..+. ...+...|+.|+++.+.. ...+-+..+|+. -+|+.|-|+.+|++|+..+|.++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4556655543 2344 556678899999976654 456666544444 5799999999999999999977654
No 148
>PRK06437 hypothetical protein; Provisional
Probab=91.75 E-value=1.4 Score=32.46 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=46.2
Q ss_pred ccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecC
Q 012714 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~ 227 (458)
.+++.-.++++...||++|-+. .|+++....+..+|+.+. .++-+++|+.+.++....|
T Consensus 8 ~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 8 KGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred cCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccC
Confidence 3556677888888999988654 488888888889999986 6678889999988765443
No 149
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=91.75 E-value=0.27 Score=37.27 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=47.3
Q ss_pred ecCCCcHHHHHHhhhcccC-CCCCCeeEEecCeecCCCCCcccc-cccCCCeEEEEEeecC
Q 012714 321 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRG 379 (458)
Q Consensus 321 v~~~~ti~~lK~~I~~~~~-i~~~~q~L~~~g~~L~~~~~l~~y-~I~~~~~l~l~~~~~~ 379 (458)
|.|.++|.+++.-+..... ..-....|.++|..|++...|++. |+..++++.++.....
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence 5788999999999887643 333457799999999999999888 6888999999876543
No 150
>PRK06437 hypothetical protein; Provisional
Probab=90.12 E-value=2.6 Score=31.02 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=44.2
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 390 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
++.-.++++.+.||.+|-+ +.|++++...+..+|+.+. .++-+++||.|-++--..||
T Consensus 10 ~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 3445678888899988764 3588889999999999997 66678899999765444443
No 151
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=90.09 E-value=1 Score=34.95 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=38.1
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---CceEEEE
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 425 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~---~~q~Li~ 425 (458)
+.++++.|+...+.+.|++.+.+|++.|+++.|.+. +...|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 567889999999999999999999999999999876 4667777
No 152
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.54 E-value=3.2 Score=30.80 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=46.4
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
|+|++... +....++++++.||.+|-+.+ +++++...+..+|+.+.. +.-+++||.|-++--..||
T Consensus 5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 45555332 134678889999999887655 677777888889999853 5568899999765444444
No 153
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=89.37 E-value=1 Score=33.69 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.6
Q ss_pred EEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecC
Q 012714 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 231 I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g 275 (458)
+.|..++|+...+.++++.|+.++=++++++.|+.+..+.+...|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 346678999999999999999999999999999999999888754
No 154
>smart00455 RBD Raf-like Ras-binding domain.
Probab=89.10 E-value=1.1 Score=33.27 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=40.1
Q ss_pred EEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecC
Q 012714 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 232 ~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g 275 (458)
.|..++|+...+.++++.|+.++=+.++++.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 46678899999999999999999999999999999999988854
No 155
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=1.3 Score=39.76 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=49.6
Q ss_pred EeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE-ecC-----eec-cCCccccccccCCCCEEEEEEE
Q 012714 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g-----~~L-~d~~tL~~y~i~~~s~i~l~~~ 224 (458)
.....+++.|++++|.+++-.+|.+++.+.|. |.| ..| +++..|..|+..+|-.||++-.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 44567789999999999999999999999987 554 234 5678999999999998887743
No 156
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=88.93 E-value=1.5 Score=33.53 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=42.4
Q ss_pred EeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEE
Q 012714 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~ 224 (458)
+...++-..++..||..++.+.+++-+...+...+..|+++++|.+-+++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 445566678899999999999999999999999998899999999999998887776653
No 157
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=88.40 E-value=1.6 Score=32.65 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G 427 (458)
+.|-.++|+.-.+.|.|+.|+.++=+++.++.|+.++...+.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 467789999999999999999999999999999988887777654
No 158
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.11 E-value=2.1 Score=32.35 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=45.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCC----CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 392 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~~~v~~~~tV~~lK~~i~~~~~~----~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
...++++.+.||.+|.+.+..+++- ......+..+|+... .+.-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3567888889999999999988642 334566777888887 45578999999887655555
No 159
>smart00455 RBD Raf-like Ras-binding domain.
Probab=88.02 E-value=2.4 Score=31.55 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=43.4
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC--eecCCC
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDG 433 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G--~~L~d~ 433 (458)
+.|-.++|+...+.+.|+.|+.++=+.+.++.|+.++...+...| +.|+-+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~ 54 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLN 54 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecC
Confidence 356788999999999999999999999999999999999888855 455433
No 160
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=88.01 E-value=2.5 Score=32.25 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012714 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (458)
Q Consensus 392 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~ 428 (458)
++.++|.++.+..+|.++|.++.++|++...|-|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 7889999999999999999999999999999999644
No 161
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=87.31 E-value=2.4 Score=32.04 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=44.8
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCC----CCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
...++++.+.||.+|.+.+...++- ......+.-+|+... .++-+++|+.|.++....||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4667888889999999999887642 334556677888776 45678999999888766554
No 162
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=86.61 E-value=2 Score=33.37 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=36.4
Q ss_pred eEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCC---CeEEEe
Q 012714 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLIF 197 (458)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~---~q~L~~ 197 (458)
..++.+.|+.+.+.+.++..+.+|++.|.++.|+... ...|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 3567789999999999999999999999999999864 555555
No 163
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=86.35 E-value=1.1 Score=46.87 Aligned_cols=68 Identities=32% Similarity=0.448 Sum_probs=44.8
Q ss_pred CCceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----C-eecCCCC-------------Cccccccc
Q 012714 313 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----G-KQLEDGR-------------TLADYNIQ 366 (458)
Q Consensus 313 ~g~~~~l~v~~~~ti~~lK~~I~~~--~~i~~~------~q~L~~~----g-~~L~~~~-------------~l~~y~I~ 366 (458)
....+.+.|..+|||..+|++|.+. .+.|.. .-.|... | ..|.|.+ ||+.|||.
T Consensus 200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 3456899999999999999999873 333331 2224332 2 3677732 88999999
Q ss_pred CCCeEEEEEeecCc
Q 012714 367 KESTLHLVLRLRGG 380 (458)
Q Consensus 367 ~~~~l~l~~~~~~~ 380 (458)
+|+++-|+++..+.
T Consensus 280 dga~vaLv~k~~~~ 293 (539)
T PF08337_consen 280 DGATVALVPKQHSS 293 (539)
T ss_dssp TTEEEEEEES----
T ss_pred CCceEEEeeccccc
Confidence 99999999886433
No 164
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=86.15 E-value=2.5 Score=32.22 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.1
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCee
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~ 201 (458)
++.+.+++..+.++|.++|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88999999999999999999999999999999987654
No 165
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=2.3 Score=38.18 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=48.4
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCceEEE-EcC-----eecC-CCCCccccCCCCCCEEEEEE
Q 012714 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 393 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li-~~G-----~~L~-d~~tL~~~~i~~~~~i~~~~ 451 (458)
++-+.+++.||.+||.+++...|.+++.+.|. |.| -.|. ++..|..|...+|-.||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 45667899999999999999999999988875 443 2344 56799999999999999863
No 166
>KOG4261 consensus Talin [Cytoskeleton]
Probab=86.06 E-value=0.43 Score=50.72 Aligned_cols=173 Identities=24% Similarity=0.305 Sum_probs=116.5
Q ss_pred CceEeeecCCCCcHHHHHHHHHHHhCC---CCCCeEEE------ecCeeccCCccccccccCCCCEEEEEEEecCCeEEE
Q 012714 162 GKTITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 232 (458)
Q Consensus 162 g~~~~~~v~~~~tV~~LK~~I~~~~gi---p~~~q~L~------~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~~I~ 232 (458)
+-.-++.+.|+++|.+-=..|.+++.- -+..+.|+ -.|-.|+.+++|.+|-+.+++++...-+. -+..
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccce
Confidence 334567888999999988888877632 14444444 24677899999999999999998655433 3456
Q ss_pred EEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEecCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEc
Q 012714 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 311 (458)
Q Consensus 233 V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~~~i~v~~ 311 (458)
|...+|..-++.|..+.+|.+|---||.+-||.-.. |.|.-...+++++.- +.|+.+...
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre~~~~~~~~~--------tgtl~~~~~----------- 149 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVREDIEEQNEEG--------TGTLNLKRK----------- 149 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhhHHHHHHhcCCC--------CceEEeehh-----------
Confidence 778888888889999999999999999999976544 666655544443311 134333211
Q ss_pred cCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeEEEEE
Q 012714 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (458)
Q Consensus 312 ~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l~l~~ 375 (458)
+|+=+ --.+.||++...-...+| |+..+++++-||..+-++++.-
T Consensus 150 ------~m~~~--~kme~Lkkkl~td~el~w-----------ld~~rtlreqgide~et~llRr 194 (1003)
T KOG4261|consen 150 ------LMRKE--RKMEKLRKKLHTDDELNW-----------LDHSRTLREQGIDEEETLLLRR 194 (1003)
T ss_pred ------HHHhh--hhhHHHHhhcccchhhhh-----------HHHhHHHHhcCccHHHHHHHHH
Confidence 11111 155666666655444555 5667788888887777777654
No 167
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.98 E-value=8.1 Score=28.60 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=42.4
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
...++++.+.||++|-+.+ ++++..-.+..+|+... .+.-+++|+.+.++....||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccccCC
Confidence 4567888889999988666 67777777778998884 36668899999887655443
No 168
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=84.98 E-value=2.4 Score=31.77 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=41.7
Q ss_pred EEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCC
Q 012714 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 281 (458)
Q Consensus 232 ~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~ 281 (458)
.|..++|+..++.+++++|+.++=+..|.+.++.|..+.|--+...|+|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 46778999999999999999999999999999999998776544434443
No 169
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=84.92 E-value=3.6 Score=31.42 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=46.5
Q ss_pred eeEEEEcC------CC-cEEEEEecCCCcHHHHHHHHHhhcC-CCC--CceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714 381 MQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 381 ~~i~vk~~------~g-~~~~~~v~~~~tV~~lK~~i~~~~~-~~~--~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~ 450 (458)
|+|+|+.. .| ...+++++.+.||.+|.+.+..+.. +.. ....+..+|+... .+.-+++||.|.++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 56666654 24 4567888889999999999987752 111 1234566777764 34467889999775
Q ss_pred EEecCC
Q 012714 451 LRLRGG 456 (458)
Q Consensus 451 ~~~~~g 456 (458)
--..||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 444443
No 170
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.10 E-value=6.8 Score=35.40 Aligned_cols=70 Identities=29% Similarity=0.359 Sum_probs=50.1
Q ss_pred eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEecC------cccCCCCcccccccCC-CCeEEEE
Q 012714 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG------KQLEDGRTLADYNIQK-ESTLHLV 298 (458)
Q Consensus 229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~g------~~l~d~~tL~~y~I~~-~~ti~l~ 298 (458)
..+.|..++|.+..+.+++++|++++...++.+.||+... +.|.+.. .-++..+++.+..... ...+++.
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4566788899999999999999999999999999997655 4455422 1245566777666552 3344443
No 171
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=83.82 E-value=7.9 Score=29.78 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=34.8
Q ss_pred ccCceEeeecCCCCcHHHHHHHHHHHhCCCC-CCeEEEecCee
Q 012714 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 201 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~~~g~~ 201 (458)
.+|..+.+.++++.+..+|++.|++++++.. ....|.|....
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 4677899999999999999999999999865 56777775443
No 172
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=83.58 E-value=6.9 Score=30.47 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=42.1
Q ss_pred ceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEe----cC-eec-cCCccccccccCCCCEEEEEEEe
Q 012714 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AG-KQL-EDGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~----~g-~~L-~d~~tL~~y~i~~~s~i~l~~~~ 225 (458)
..++..+...+||+.+...+.+.+.| ...-||-- ++ ..| +.+.|+.+.|+.+|..|.+-.+.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 35667788999999999999999999 56678763 22 234 45679999999999988766554
No 173
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.85 E-value=42 Score=31.45 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=110.6
Q ss_pred ccccCCCCEEEEEEEecCCeEEEEEccCCceEEEe----ec-ccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcc
Q 012714 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (458)
Q Consensus 210 ~y~i~~~s~i~l~~~~~~~~~I~V~~~~g~~i~~~----v~-~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL 284 (458)
+|-+.+|+.|.+.+--.......+......++.+- ++ ..-|++++.+.|..++.- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~--------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------G--------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------c---------
Confidence 47788999998876543333222233222233332 33 477999999999876410 0
Q ss_pred cccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCee---EE--ecCee------
Q 012714 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---LI--FAGKQ------ 353 (458)
Q Consensus 285 ~~y~I~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~---L~--~~g~~------ 353 (458)
.|-.. ..+.+.+....+..|+|-..-.+.-.+.+.++.|+.+. |..-.|+.+.... +. -+|+.
T Consensus 62 -~~~~~--p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~a---i~~AGG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 -GFVKQ--PQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDV---LALAGGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred -CcccC--CEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHH---HHHcCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 01111 22333333334456777555555556777777887765 4444555543211 11 12332
Q ss_pred ----cCCCCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCC----CCceEEEE
Q 012714 354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP----PDQQRLIF 425 (458)
Q Consensus 354 ----L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~----~~~q~Li~ 425 (458)
+.++..-.++-++++++|++-.. -.++|--.-++.-.+++.++.|+.+ .|+.--|+. +....++.
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~---al~~aGG~~~~a~~~~v~i~R 208 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQ---ALAQGGGLTPRGTERGIRVMR 208 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHH---HHHhcCCCCcccCcceEEEEE
Confidence 33444556788999999998532 2455533334444677778887755 455555542 22333332
Q ss_pred ---cCeecCCCCCccccCCCCCCEEEE
Q 012714 426 ---AGKQLEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 426 ---~G~~L~d~~tL~~~~i~~~~~i~~ 449 (458)
+|+.-.-...+.+ .+++||+|++
T Consensus 209 ~~~~g~~~~~~~~~~~-~l~~gDii~V 234 (239)
T TIGR03028 209 RDDKGAVEEVSGELGD-LVQPDDVIYV 234 (239)
T ss_pred ECCCCcEEEEecCCCc-ccCCCCEEEE
Confidence 2432111112222 4899999975
No 174
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=82.75 E-value=7.4 Score=28.23 Aligned_cols=60 Identities=15% Similarity=0.317 Sum_probs=41.2
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+.+ + ..|+.+|.+.+ ++++....+..+++... ....++.-+++|+.|.++....||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 4666665 3 45899888755 66666566778888775 233456778999999988765554
No 175
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=81.96 E-value=2 Score=42.02 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=55.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC--CCccccCCCCCCEEEE
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHL 449 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~--~tL~~~~i~~~~~i~~ 449 (458)
..+.+.++|..+-....|+..+....|++....-|+|+++++.++ +++.+|+++.++.+.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 567788999999999999999999999999999999999999865 7899999999999854
No 176
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=81.84 E-value=6.2 Score=28.01 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=34.9
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 394 ~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~ 450 (458)
.+++..+.|..+||+++... .=.+|++|-...++. -+++||.|.++
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~-----~L~e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD------ADIVILNGFPTKEDI-----ELKEGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCcc-----ccCCCCEEEEE
Confidence 48889999999999876654 227899998887655 56778999543
No 177
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=81.59 E-value=5.8 Score=30.29 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=40.5
Q ss_pred ceEeeecCCCCcHHHHHHHHHHHh-CCCC--CCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 163 KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~I~~~~-gip~--~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
....++++...||++|.+.+.... ++.. ..-.+..+|+... .++-+++|++|.++.+..||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 446678888999999999997665 1111 1123556777654 44567889999887655543
No 178
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=81.59 E-value=6 Score=29.49 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=41.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecCCCCCcccc
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 439 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d~~tL~~~ 439 (458)
+.|..++|+...+.+.|+.||.++-..+.++.|+.++...+.. ..+.|..++..+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeee
Confidence 5677899999999999999999999999999999888766654 34566655555443
No 179
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=81.55 E-value=5.6 Score=30.14 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=37.4
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012714 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (458)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~ 428 (458)
.+.++. .|....+.++++.|..+|+.+|+.+++.+.....|-|...
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 344544 5677789999999999999999999998877888888643
No 180
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=81.17 E-value=7.3 Score=28.04 Aligned_cols=65 Identities=23% Similarity=0.463 Sum_probs=48.9
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHH---hCCCCCCeEEE-ecCeeccCCccccccccCCCCEEEEEEEe
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~---~gip~~~q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l~~~~ 225 (458)
+|+...++.+++...--+.++--+. .|-|++.-.|. -+|..|+-++.+.|||+.+|-++.|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 5677778877777655555544333 35688877776 57889999999999999999999888764
No 181
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=81.01 E-value=14 Score=33.24 Aligned_cols=72 Identities=28% Similarity=0.332 Sum_probs=52.1
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEc---C---eecCCCCCccccCCC-CCCEEEEE
Q 012714 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLV 450 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~---G---~~L~d~~tL~~~~i~-~~~~i~~~ 450 (458)
.++.+.|..++|+...+.+++.+|+.++-+.++.+.|++. ...-|.+. + .-|+...++.+...+ ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4678899999999999999999999999999999999844 33334432 1 346666777776654 23444443
No 182
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=80.77 E-value=8.4 Score=27.96 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=41.6
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 388 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
.+|+.+.+ + ..|+.+|.+.+ +++++....-.+|+.+. ...-++.-+++||.|-++-=..||
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 35666555 3 45898888654 56666677788998887 334456678999999765545554
No 183
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=79.23 E-value=12 Score=28.42 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=43.8
Q ss_pred EEEEecCC-CcHHHHHHHHHhhcC-C--CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 393 ITLEVESS-DTIDNVKAKIQDKEG-I--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 393 ~~~~v~~~-~tV~~lK~~i~~~~~-~--~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
..+++.++ .||.+|.+.+.++++ + ......+..+|+...+ +.-+++||.|.++--..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 47888877 899999999999875 1 1234567778888774 4578999999877655554
No 184
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=78.48 E-value=5.9 Score=30.47 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=35.2
Q ss_pred cCCceEEEeecccchHHHHHHHHhhhcCCCC-CceEEEecCcc
Q 012714 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 277 (458)
Q Consensus 236 ~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~-~~q~L~~~g~~ 277 (458)
.+|..+.+.+.++.+..+|++.|.+++++.. ..+.|-|...+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 5678999999999999999999999999875 56778775543
No 185
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=77.37 E-value=11 Score=28.10 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.7
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEee
Q 012714 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g 47 (458)
+.|-.++|++..+.|.|+.||.++=+++-++.|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 445668999999999999999999999999999999885555544
No 186
>PRK07440 hypothetical protein; Provisional
Probab=77.34 E-value=17 Score=26.99 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=47.8
Q ss_pred CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+.|+|++ +|+. .++....||.+|-+ ..+++++...+-++|+.+.-+ .-.++-+++||.|-++.-..||
T Consensus 3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 3 NPITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 4566654 4554 66778889987764 557788888899999988732 3345568999999776555554
No 187
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=76.25 E-value=11 Score=27.18 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=48.5
Q ss_pred CCceEEEeecccchHHHHHHHHhhhc---CCCCCceEEEe-cCcccCCCCcccccccCCCCeEEEEEee
Q 012714 237 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 301 (458)
Q Consensus 237 ~g~~i~~~v~~~dtV~~lK~~i~~~~---gip~~~q~L~~-~g~~l~d~~tL~~y~I~~~~ti~l~~~~ 301 (458)
+|+...++.+.+....-+.++-.+.. |-|+..--|-- +|..++-++...|||+.+|-++.|+++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 56777788777776666655554443 57777666654 6778888999999999999999998764
No 188
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=75.90 E-value=16 Score=27.71 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=42.1
Q ss_pred EeeecCCC-CcHHHHHHHHHHHhC-C-C-CCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 165 ITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 165 ~~~~v~~~-~tV~~LK~~I~~~~g-i-p-~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
..++++.+ .||.+|.+.+.++.. + . .....+..+++...+ +.-+++|+++.++.+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 56778866 899999999988864 1 1 123456677777664 5678889999888765554
No 189
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=75.82 E-value=8.5 Score=28.68 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=49.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~~~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
...+.+....||.+|.+.+..+++- ......+..+|+...+ .-.+.-+++||.|.++--..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5678899999999999999988641 3367888899999988 3556678999999876555554
No 190
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=75.09 E-value=15 Score=26.69 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=42.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. .++.++.|+.+|-+ ..+++++...+.++|..+.-.+- +.+ +++||.|-++--..||
T Consensus 6 NG~~--~~~~~~~tl~~ll~----~l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQ--VEVDEQTTVAALLD----SLGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEE--EEcCCCCcHHHHHH----HcCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeeccCC
Confidence 5654 45567788877654 35788999999999998874432 245 8999999776555554
No 191
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=74.80 E-value=9.4 Score=27.09 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=34.0
Q ss_pred CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcc
Q 012714 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57 (458)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~ 57 (458)
|+|+| +|+ .+++..+.|..++|+++.... =.++++|-...++..|.
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~~L~ 46 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDIELK 46 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCccccC
Confidence 77777 343 457888889999999987632 27899999987755554
No 192
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=74.01 E-value=1 Score=43.21 Aligned_cols=62 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred eeEEEEcCCCcEEEEEec---C--CCcHHHHHHHHHh----------hcCCCCCceE-----EEEcCeecCCCCCccccC
Q 012714 381 MQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN 440 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~---~--~~tV~~lK~~i~~----------~~~~~~~~q~-----Li~~G~~L~d~~tL~~~~ 440 (458)
+.|++|...+..+.+.+. | +.+|.++|..++. +.++|.+..+ |+|+-+.+.|.+||.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 566666666655544422 3 5899999999999 8889888888 999999999999999875
Q ss_pred CC
Q 012714 441 IQ 442 (458)
Q Consensus 441 i~ 442 (458)
-.
T Consensus 159 ~~ 160 (309)
T PF12754_consen 159 AD 160 (309)
T ss_dssp --
T ss_pred hc
Confidence 33
No 193
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=73.51 E-value=4.8 Score=39.43 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=56.1
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCC--ccccccccCCCCEEEEEEEe
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~--~tL~~y~i~~~s~i~l~~~~ 225 (458)
..+.+++++...-....++..+....|++.+..-++|+++.+.++ .+|..||+..++.+.+.-+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 456678888888899999999999999999999999999999654 78999999999988766543
No 194
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=73.37 E-value=22 Score=27.40 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=42.0
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCC-----------CCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gi-----------p~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
...++++ ..||.+|.+.+.+++.- ......+..+|+....+.. .-+++|++|.++.+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4567776 89999999999877531 1123556677877654422 568899999888766554
No 195
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=73.29 E-value=13 Score=27.67 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=48.6
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCC--CCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
...+.+....||.+|.+.+..+..- ......+..+|+...+ .-.+.-+++|+++.++....||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5667788999999999999876631 3366778889998887 3667788999999887765554
No 196
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=72.89 E-value=20 Score=27.01 Aligned_cols=45 Identities=16% Similarity=0.348 Sum_probs=36.3
Q ss_pred EEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecC
Q 012714 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (458)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 123 (458)
.+.++ .+|....+.++++.|-.+|+.+|.++.+.+.....|-|..
T Consensus 3 ~vK~~-~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLR-YGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 45554 3677889999999999999999999999877666776763
No 197
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=72.52 E-value=11 Score=40.30 Aligned_cols=178 Identities=19% Similarity=0.240 Sum_probs=101.3
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--e--cCeec--cCCccccccccCCCCEEEEEE--EecC---CeEEE
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVL--RLRG---GMQIF 232 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~--~g~~L--~d~~tL~~y~i~~~s~i~l~~--~~~~---~~~I~ 232 (458)
.+.+.|+...+++.+|+.|++..++|.+++++. + +|..+ .++.||+. ..++.+|.+-+ .+.. .+.|+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 567889999999999999999999999999988 2 33333 46677765 45666665544 2211 13332
Q ss_pred EE-ccCCc------eEEEeecccchHHHHHHHHhhhc--------CCCCCceEEEecCcccCCCCcccccccCCCCeEE-
Q 012714 233 VK-TLTGK------TITLEVESSDTIDNVKAKIQDKE--------GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH- 296 (458)
Q Consensus 233 V~-~~~g~------~i~~~v~~~dtV~~lK~~i~~~~--------gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~- 296 (458)
.- ..... .+...++.+.||++.|..+-.++ .+....+|+..+++. ..++-+.||++-..+.-+
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~-~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGV-GPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCc-CCceEecCcchhhhhhhhh
Confidence 21 11111 23444678999998887655443 255555555544332 122222232222211110
Q ss_pred -------------EEE-eecCceeEEEEccCCc-----eEEEeecCCCcHHHHHHhhhcccCCCCCC
Q 012714 297 -------------LVL-RLRGGMQIFVKTLTGK-----TITLEVESSDTIDNVKAKIQDKEGIPPDQ 344 (458)
Q Consensus 297 -------------l~~-~~~~~~~i~v~~~~g~-----~~~l~v~~~~ti~~lK~~I~~~~~i~~~~ 344 (458)
+.. ..-....|+++.|--. .+.-.+...+.+.++++.+-+--|||.+.
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~ 1101 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDR 1101 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhh
Confidence 000 1112235566555221 22233455778899999999889999863
No 198
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=72.32 E-value=23 Score=25.59 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=43.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. +++..+.|+.++-+ ..+++++...+.++|..+.-.. -.+.-+++||.|-++.-..||
T Consensus 6 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEP--RELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 5654 56777889887764 3578888888889998887443 233357999999776555554
No 199
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=72.03 E-value=19 Score=27.96 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=40.7
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccc
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~ 438 (458)
|+|.|.. .|....+.|+++.+..+|.++|.+++++. ....+-|... .|.-|+++
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 3444443 56788899999999999999999999985 5667777665 55555554
No 200
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=71.76 E-value=18 Score=26.23 Aligned_cols=57 Identities=21% Similarity=0.396 Sum_probs=40.8
Q ss_pred eecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
++++...||.+|.+.+ +++.+...+..+|+....+ ...++-+++|+.+.++....||
T Consensus 9 ~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 9 REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4556778999988765 4777778888899877432 2334568999999888766554
No 201
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=71.23 E-value=19 Score=26.07 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. ++++...||.+|.+.+ +++++...+..+|+.+..+ .-+++-+++||.|.++--..||
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4554 6667788999888665 4677888888999988644 2233468999999776555554
No 202
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=71.09 E-value=1.3 Score=42.49 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHH----------HhCCCCCCeE-----EEecCeeccCCccccccccC
Q 012714 172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ 214 (458)
Q Consensus 172 ~~tV~~LK~~I~~----------~~gip~~~q~-----L~~~g~~L~d~~tL~~y~i~ 214 (458)
+.+|.++|..+++ ..++|.+..+ |.|+-+.+.|.+||.+..-.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 6899999999999 8999999998 99999999999999987644
No 203
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=70.33 E-value=24 Score=27.20 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=43.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCC------C-----CCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 392 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 392 ~~~~~v~~~~tV~~lK~~i~~~~~~------~-----~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
...++++ +.||.+|.+.+.++++- . -....+..+|+....+.. .-+++||.|.++--..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4567776 89999999999988641 1 123566778887765432 568999999877555554
No 204
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=70.05 E-value=8 Score=41.46 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=39.7
Q ss_pred cCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeec
Q 012714 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (458)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L 50 (458)
..++..+.+-+.++.|+..++++|.+..|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 34577888999999999999999999999999999999998764
No 205
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=69.46 E-value=26 Score=27.05 Aligned_cols=67 Identities=12% Similarity=0.232 Sum_probs=47.5
Q ss_pred ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
.|+|+| +|+. .+++.+.||.+|-+. .++++....+-.+|..+. ...-+++-+++||.|.++--..||
T Consensus 18 ~m~I~V---NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISI---NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEE---CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 355544 4554 566778888877653 478888888889999985 334566679999999876555554
No 206
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=69.12 E-value=20 Score=26.82 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.0
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012714 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (458)
Q Consensus 385 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~ 428 (458)
|-.++|+.-.+.+.|+.||.++=.++.++.|+.++..-++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44688999899999999999999999999999888777766654
No 207
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=69.02 E-value=24 Score=25.38 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=41.4
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+ +++.+.|+.+|.+.+ +++++...+..+|+....+ ...++-+++|+.+.++....||
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 44444 445677899888754 5677777777888877322 2344679999999888765554
No 208
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=68.92 E-value=15 Score=27.48 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.5
Q ss_pred EEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCc
Q 012714 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276 (458)
Q Consensus 233 V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~ 276 (458)
|..++|.+-.+.+.++.||.++=.+++++-|++++.+-++..|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 45678899999999999999999999999999999887777554
No 209
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=68.43 E-value=27 Score=27.07 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=33.8
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecC
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 123 (458)
++|.|. .+|....+.++++.+..+|.++|.+++++. ..-.+-|..
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykD 47 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKD 47 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 344443 478899999999999999999999999984 333444543
No 210
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=67.99 E-value=39 Score=24.51 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. +++..+.|+.+|-+. .+.+.....+-.+|+.+.-+ .-+++-+++||.|-++-=..||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQP--MQCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 4554 566778899988764 45555667788899988622 2344468999999776555554
No 211
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=67.91 E-value=36 Score=27.60 Aligned_cols=75 Identities=27% Similarity=0.275 Sum_probs=50.5
Q ss_pred ceeEEEEcCC-CcEEEEEecCCCcHHHHHHHHHhh----cC--CCCC-ceEEEEcCe--ecCCCCCcccc-----CCCCC
Q 012714 380 GMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGK--QLEDGRTLADY-----NIQKE 444 (458)
Q Consensus 380 ~~~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~----~~--~~~~-~q~Li~~G~--~L~d~~tL~~~-----~i~~~ 444 (458)
.+.|.|...+ ...+++.+++++++.++.+.+-.+ .+ -+++ +-.|--.|+ -|..+..|.+| +++.|
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~ 96 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNG 96 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcC
Confidence 3444554443 456899999999999999887776 11 2233 566666666 35556666666 46788
Q ss_pred CEEEEEEEec
Q 012714 445 STLHLVLRLR 454 (458)
Q Consensus 445 ~~i~~~~~~~ 454 (458)
..+|+++..+
T Consensus 97 ~~~~L~L~~~ 106 (108)
T smart00144 97 REPHLVLMTL 106 (108)
T ss_pred CCceEEEEec
Confidence 8899887654
No 212
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=67.84 E-value=21 Score=35.00 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=48.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCCC
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~~ 458 (458)
+|+. +++..+.||.+|-+ ..+++++...+.+||+.+.-+ .-.++-+++||.|-++-=..||+|
T Consensus 6 NGk~--~el~e~~TL~dLL~----~L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLA----ELGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CCEE--EecCCCCcHHHHHH----HcCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCCCC
Confidence 4554 66677888887764 457889999999999999632 345667899999988877888886
No 213
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=67.19 E-value=28 Score=25.05 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=42.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. +++..+.|+.+|.+.+ +++++...+..+|+.+..+ .-.++-+++||.|-++-=..||
T Consensus 4 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEP--VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeE--EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 5654 5567778999888654 5667778888899988533 2344568999999776555554
No 214
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=66.60 E-value=28 Score=28.20 Aligned_cols=63 Identities=29% Similarity=0.322 Sum_probs=46.5
Q ss_pred cEEEEEeecCccHHHHHHHhhcc------cCCCCC-ceEEEEeeee--ccCCCCcccccc-----ccccccceeEee
Q 012714 11 KTITLEVESSDTIDNVKAKIQDK------EGIPPD-QQRLIFAGKQ--LEDGRTLADYNI-----QKESTLHLVLRL 73 (458)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~------~gip~~-~q~l~~~g~~--L~d~~tl~~y~i-----~~~sti~l~~~~ 73 (458)
.++++.+.+++|++++.+.+-.+ ..-+++ .-.|...|+. |..+..|.+|.. ..+..+||++..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 57999999999999999877665 223333 5678888886 778888888863 356677877643
No 215
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=66.43 E-value=12 Score=37.23 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=53.2
Q ss_pred eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhC-CCCCCeEEE--ecCcccC-CCcchhhcccccccce
Q 012714 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLE-DGRTLADYNIQKESTL 143 (458)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~G~~L~-d~~tL~~~~i~~~s~i 143 (458)
-.|.|+..+|......++.+.||.+++..|..... -+...+.|+ |--+.|. |..||.+-|+.+...+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 35888889999999999999999999999998653 445566666 5578885 5689999998765443
No 216
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=66.17 E-value=8.9 Score=30.31 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=36.8
Q ss_pred eecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCe-------ecc---CCccc--cccccCCCCEEEEEEEecCC
Q 012714 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLE---DGRTL--ADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~-------~L~---d~~tL--~~y~i~~~s~i~l~~~~~~~ 228 (458)
++.+...||.+|-+.+.+.+ |....+++..+. .|- |-+.+ .++-+++|+.|.++.+..||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 44446779999999998776 333333433221 121 22233 36789999999888766554
No 217
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=66.12 E-value=13 Score=39.16 Aligned_cols=64 Identities=34% Similarity=0.471 Sum_probs=44.2
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEEc----Ce-ecCCC-------------CCccccCCCC
Q 012714 390 GKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIFA----GK-QLEDG-------------RTLADYNIQK 443 (458)
Q Consensus 390 g~~~~~~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~~----G~-~L~d~-------------~tL~~~~i~~ 443 (458)
...+.+.|-..|||.++|++|-+.. + ..+++.-|-+. |+ .|+|. .||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3457899999999999999998763 2 23466666552 33 66654 4799999999
Q ss_pred CCEEEEEEEe
Q 012714 444 ESTLHLVLRL 453 (458)
Q Consensus 444 ~~~i~~~~~~ 453 (458)
|+++-++-++
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999776664
No 218
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=66.04 E-value=33 Score=24.83 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=40.9
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeecc-CCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~-d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+. ++++.|+.+|-+. .++|.....+..++..+. +++. .+ +++|+.|.++-...||
T Consensus 6 NG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~--~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA--TK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh--hh-cCCCCEEEEEeeccCC
Confidence 455444 4467788876553 588888888999998773 3333 35 9999999988655443
No 219
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=65.89 E-value=45 Score=23.90 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=39.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. +++.++.|+.++-+.+. ++ ....+..+|....... -.+.-+++||.|.++-=..||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 4554 66778889998887653 33 3456778888875332 233348899999776555554
No 220
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=65.36 E-value=10 Score=37.66 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=53.3
Q ss_pred CceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCC-CeeEEec--CeecCC-CCCcccccccCCCeE
Q 012714 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA--GKQLED-GRTLADYNIQKESTL 371 (458)
Q Consensus 303 ~~~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~-~q~L~~~--g~~L~~-~~~l~~y~I~~~~~l 371 (458)
+.-.|.|+-.+|..+.+.++-++||.+|+.-|+..-.-.+. .+.|+.. -++|.| ..||.+=|+.+...+
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 44568888899999999999999999999999986543333 4555544 378888 889999998776544
No 221
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=64.67 E-value=29 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=34.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G 427 (458)
|.+....+....+.+.++.+..+|+.+|++.++.+.....|.|..
T Consensus 4 vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344444333334899999999999999999999998888998853
No 222
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=63.51 E-value=61 Score=27.89 Aligned_cols=110 Identities=23% Similarity=0.362 Sum_probs=72.8
Q ss_pred EEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCe----EEEEE-eecCceeEEEEcCCCc
Q 012714 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST----LHLVL-RLRGGMQIFVKTLTGK 391 (458)
Q Consensus 317 ~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~----l~l~~-~~~~~~~i~vk~~~g~ 391 (458)
++-+...-+|.+.+=.+|.+-.|| .|.+.+|..|+.... ||=..|.. -.-.. --...+.+.|+. |.
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~Vp---yGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--Gr 76 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTVP---YGPARGTPVNHPDRKVINVGGEEVELTVKV--GR 76 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCCC---CCCCCCCcCCCCcceEEEECCEEEEEEEEE--eE
Confidence 566677789999999999887665 678888888886432 33332221 11111 123456666665 33
Q ss_pred EEEEEecC-CCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccC
Q 012714 392 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440 (458)
Q Consensus 392 ~~~~~v~~-~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~ 440 (458)
+-++++. .+.+..+++..++.+.++-+ +..|+-+....|++||-
T Consensus 77 -i~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 77 -IILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred -EEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 4688888 78888888777776543322 34699999999999993
No 223
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=63.18 E-value=20 Score=35.61 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=53.1
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC--CCCCceEEEEc----Cee--cCCCCCccccCCCCCCEEEEEE
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~----G~~--L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
|-+.+|...|+. .++++++++.+.|-.++-..+. ..|++.-+.-+ |.. +-.++|+.|.|++.|+.+++-.
T Consensus 1 Mi~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 557788888886 6999999999999888887654 45555544432 332 3457899999999999998866
No 224
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=62.39 E-value=52 Score=23.68 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=41.3
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+. ++++...|+.++-.. .+++.....+..+|..+.-. .-.+.-+++|+.+.++....||
T Consensus 6 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 3554 456677888887653 57888888888888766422 2334558899999888655443
No 225
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=61.59 E-value=21 Score=27.63 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.8
Q ss_pred EEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc
Q 012714 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (458)
Q Consensus 230 ~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~ 268 (458)
.+-|..++|.++.+.+..+++.+++=+.++.+.|+|.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 345667789999999999999999999999999999887
No 226
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=61.55 E-value=15 Score=27.89 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.3
Q ss_pred eEEEeecccchHHHHHHHHhhhcCCCCCceEEEecC
Q 012714 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 240 ~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g 275 (458)
|+.+.+.+....++|..+|.+++++|++.-.|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 566778889999999999999999999999999954
No 227
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=61.54 E-value=16 Score=27.67 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.6
Q ss_pred eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecC
Q 012714 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (458)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g 199 (458)
++.+.+++..+..+|..+|+++...|++.-.|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567888999999999999999999999999999854
No 228
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=61.47 E-value=60 Score=23.53 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=39.7
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+ ++....|+.+|.+. .+.+.....+..+++.+.- ..-+.+-+++|+.|.++....||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 35554 44567789988765 3555556677788888741 12344568899999888665554
No 229
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=61.35 E-value=55 Score=23.91 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=42.4
Q ss_pred CCcEEEEEecCC-CcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 389 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 389 ~g~~~~~~v~~~-~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+|+. .+++.+ .||.+|-+ ..+++++...+-++|+.+.-+ .-+++-+++||.|-++.-..||
T Consensus 6 NG~~--~~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQ--IEVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEE--EEcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 5665 455555 57877654 467888888899999998743 3455568999999776555554
No 230
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=61.25 E-value=23 Score=26.63 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCceEEEeec-ccchHHHHHHHHhhhcCCCCCceEEEecC
Q 012714 237 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (458)
Q Consensus 237 ~g~~i~~~v~-~~dtV~~lK~~i~~~~gip~~~q~L~~~g 275 (458)
+|....+.+. .+.|.++|+++|+++++++.....+.|..
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3567777877 88899999999999999876556666644
No 231
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=61.17 E-value=58 Score=23.29 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=37.8
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+. +++++..|+++|.+.+ +++ ....+..+|+..... .-.+.-+++|+++.++....||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 3444 4556778999988765 333 234566788776422 1234458889999988766554
No 232
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=61.11 E-value=27 Score=28.85 Aligned_cols=60 Identities=20% Similarity=0.474 Sum_probs=41.4
Q ss_pred EEEEE-EeC-CCCHHHHHHHHhHH----hCCCCCC------eEEEec-----------------Cccc---CCCcchhhc
Q 012714 88 TITLE-VES-SDTIDNVKAKIQDK----EGIPPDQ------QRLIFA-----------------GKQL---EDGRTLADY 135 (458)
Q Consensus 88 ~~~l~-v~~-~~tV~~lK~~i~~~----~gip~~~------q~L~~~-----------------G~~L---~d~~tL~~~ 135 (458)
.+.+. |+. +.||.+|++.+.+. .|+||-+ .++++. ...| +++.+|.++
T Consensus 16 ~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~ 95 (122)
T PF10209_consen 16 NLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL 95 (122)
T ss_pred eeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc
Confidence 34444 777 89999999988765 3566533 233321 1457 778999999
Q ss_pred ccccccceeEEE
Q 012714 136 NIQKESTLHLVL 147 (458)
Q Consensus 136 ~i~~~s~i~l~~ 147 (458)
||.++..|.+..
T Consensus 96 gv~nETEiSfF~ 107 (122)
T PF10209_consen 96 GVENETEISFFN 107 (122)
T ss_pred CCCccceeeeeC
Confidence 999998887653
No 233
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=60.94 E-value=41 Score=34.83 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=55.0
Q ss_pred eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC----CCCceEEE---EcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~----~~~~q~Li---~~G~~L~d~~tL~~~~i~~~~~i~~~~~~ 453 (458)
.+++|...+. ...+-++.+..|.++-..+-+..+- +.....+. -+|..|+.++||.+.++.||+++++.-+.
T Consensus 3 ~RVtV~~~~~-~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAGRR-AVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeCCe-eeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 4677777654 4688899999999999999888764 22222333 26889999999999999999999886543
No 234
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=60.56 E-value=11 Score=29.83 Aligned_cols=34 Identities=35% Similarity=0.706 Sum_probs=23.3
Q ss_pred EEEEcCeecCCCCCcccc-CCCCCCEEEEEEEecC
Q 012714 422 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRG 455 (458)
Q Consensus 422 ~Li~~G~~L~d~~tL~~~-~i~~~~~i~~~~~~~~ 455 (458)
.|-|.|+.|..+++|++| |-.+-..|.+-+.++|
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g 37 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRG 37 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCC
Confidence 367999999999999999 3333444444444444
No 235
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.11 E-value=14 Score=35.69 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=43.7
Q ss_pred ecccchHHHHHHHHhhhcCCCCCceEEEe---cCc-----ccCCCCcccccccCCCCeEEEE
Q 012714 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 245 v~~~dtV~~lK~~i~~~~gip~~~q~L~~---~g~-----~l~d~~tL~~y~I~~~~ti~l~ 298 (458)
+.-.-||.+++.++..+.|+.+...+|++ .|+ .++-+.+|-.|+|+.|+.+.+.
T Consensus 354 I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 354 ICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 33456999999999999999999999987 333 3666788999999999987543
No 236
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.52 E-value=11 Score=36.53 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=44.4
Q ss_pred eecCCCCcHHHHHHHHHHHhCCCCCCeEEEe---cCe-----eccCCccccccccCCCCEEEEE
Q 012714 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~---~g~-----~L~d~~tL~~y~i~~~s~i~l~ 222 (458)
..+.-.-||.+++..+..+.|+.+.+++|++ .|+ .++-+..|..|.|++|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3455577999999999999999999999996 333 3455678888999999987553
No 237
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=58.35 E-value=29 Score=37.22 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=100.6
Q ss_pred eEEEeecccchHHHHHHHHhhhcCCCCCceEEEe----cCcc--cCCCCcccccccCCCCeEEEEE--eecCc---eeEE
Q 012714 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQ--LEDGRTLADYNIQKESTLHLVL--RLRGG---MQIF 308 (458)
Q Consensus 240 ~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~----~g~~--l~d~~tL~~y~I~~~~ti~l~~--~~~~~---~~i~ 308 (458)
...+.|....++..+|.-|++..++|.+.+.+.. +|.. ..++.||... -++++|.+.+ .+.++ +.|+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 6778899999999999999999999999988874 2332 2456677644 4555555443 22222 3333
Q ss_pred EE------ccCCc-eEEEeecCCCcHHHHHHhhhcccC------CCCCCeeEEec-------CeecCC-CCCcccccccC
Q 012714 309 VK------TLTGK-TITLEVESSDTIDNVKAKIQDKEG------IPPDQQRLIFA-------GKQLED-GRTLADYNIQK 367 (458)
Q Consensus 309 v~------~~~g~-~~~l~v~~~~ti~~lK~~I~~~~~------i~~~~q~L~~~-------g~~L~~-~~~l~~y~I~~ 367 (458)
.- +.+.+ .+...+..+.||+..|..+-.++. +.-.-|++... |+.+.| +.++.|-+-..
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 31 11122 234677899999999987554322 11122222222 344444 44443332111
Q ss_pred CCeEEEEE--------eecCceeEEEEcCCCcE-----EEEEecCCCcHHHHHHHHHhhcCCCCCceEE
Q 012714 368 ESTLHLVL--------RLRGGMQIFVKTLTGKT-----ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (458)
Q Consensus 368 ~~~l~l~~--------~~~~~~~i~vk~~~g~~-----~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~L 423 (458)
.+-+++.. ...+.+.|+||...-.+ |+=-+-..+++.++++.+++-.|+|.++..+
T Consensus 1036 ~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~ 1104 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAI 1104 (1203)
T ss_pred HHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhh
Confidence 11111100 11223455555443222 2211223556889999999999999887643
No 238
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=58.26 E-value=65 Score=24.86 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=42.5
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+.+ +++...||.+|-+. .++++....+..+|..+. ....+.+-+++|+.|.++-...||
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45544 44567788887654 478887778889998883 333556679999999888655443
No 239
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=57.97 E-value=86 Score=25.65 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=42.3
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCcccc--CCC-CCCEEEEEEEe
Q 012714 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY--NIQ-KESTLHLVLRL 453 (458)
Q Consensus 394 ~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tL~~~--~i~-~~~~i~~~~~~ 453 (458)
.+-|+.+.||.++...|..+..+.+++-..+| ++.....+.++++. +-+ ++..+++....
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys~ 107 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSS 107 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEec
Confidence 45699999999999999999998877755455 55444566777665 223 35577666543
No 240
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=57.63 E-value=58 Score=26.10 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=48.7
Q ss_pred ceeEEEEcC-CCcEEEEEecCCCcHHHHHHHHHhhc--CCC---C-CceEEEEcCe--ecCCCCCcccc-----CCCCCC
Q 012714 380 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIP---P-DQQRLIFAGK--QLEDGRTLADY-----NIQKES 445 (458)
Q Consensus 380 ~~~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~--~~~---~-~~q~Li~~G~--~L~d~~tL~~~-----~i~~~~ 445 (458)
.+.|.|... .+..+++.++++.|+.++.+.+-.+. +.. . ++-.|--.|+ -|..+.+|.+| +++.+-
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 456666666 56788999999999999998887772 221 2 2567777776 35677888888 456677
Q ss_pred EEEEEEEe
Q 012714 446 TLHLVLRL 453 (458)
Q Consensus 446 ~i~~~~~~ 453 (458)
.+++++-.
T Consensus 96 ~~~L~Lv~ 103 (106)
T PF00794_consen 96 DPHLVLVH 103 (106)
T ss_dssp -EEEEEEE
T ss_pred CcEEEEEe
Confidence 77777643
No 241
>KOG4261 consensus Talin [Cytoskeleton]
Probab=57.47 E-value=27 Score=37.79 Aligned_cols=108 Identities=26% Similarity=0.346 Sum_probs=79.0
Q ss_pred eEEEeecccchHHHHHHHHhhhcC---CCCCceEEEe------cCcccCCCCcccccccCCCCeEEEEEeecCceeEEEE
Q 012714 240 TITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 310 (458)
Q Consensus 240 ~i~~~v~~~dtV~~lK~~i~~~~g---ip~~~q~L~~------~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~~~i~v~ 310 (458)
+-++...|+.+|-+-...|.+++. .-+..|-|.. +|--|+.+++|.+|-+.+++++....+.+ ..-|+
T Consensus 14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lkvr 90 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLKVR 90 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cceee
Confidence 344555688889888878877653 1144444432 34458999999999999999998765443 24467
Q ss_pred ccCCceEEEeecCCCcHHHHHHhhhcccCCCCC-CeeEEec
Q 012714 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA 350 (458)
Q Consensus 311 ~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~-~q~L~~~ 350 (458)
..+|..-|+-|..+.++.++...|+.+.||... .+.|+-.
T Consensus 91 mldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre 131 (1003)
T KOG4261|consen 91 MLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVRE 131 (1003)
T ss_pred ecccccceeeecccccHHHHHHHHHhccCccchhhhhhhHH
Confidence 788888889999999999999999999998653 2444443
No 242
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=56.83 E-value=25 Score=29.06 Aligned_cols=56 Identities=21% Similarity=0.494 Sum_probs=38.6
Q ss_pred ecCC-CCcHHHHHHHHHHHh----CCCC------CCeEEEec----------------C-eec---cCCccccccccCCC
Q 012714 168 EVES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA----------------G-KQL---EDGRTLADYNIQKE 216 (458)
Q Consensus 168 ~v~~-~~tV~~LK~~I~~~~----gip~------~~q~L~~~----------------g-~~L---~d~~tL~~y~i~~~ 216 (458)
.|+. +.||.+|++.+.+.. |+|| +..++.+. . -.| +++.+|.++||.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3665 889999998887653 5554 33333321 1 245 67889999999999
Q ss_pred CEEEEEE
Q 012714 217 STLHLVL 223 (458)
Q Consensus 217 s~i~l~~ 223 (458)
..|.++-
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 9887663
No 243
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=56.32 E-value=29 Score=37.36 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=38.5
Q ss_pred ecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcc
Q 012714 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (458)
Q Consensus 83 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~ 125 (458)
+.++..+.+.++++.|...+++.|...+|+|...|.|+|.|..
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 3466778888999999999999999999999999999999754
No 244
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=55.75 E-value=28 Score=27.02 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.4
Q ss_pred eEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCc
Q 012714 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (458)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~ 40 (458)
++=|-.++|.++++++..+|+.+.+=+.+..+.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 344556899999999999999999999999999999765
No 245
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=55.69 E-value=38 Score=27.40 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=41.3
Q ss_pred EEEEEEEecCCeEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcc
Q 012714 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 277 (458)
Q Consensus 218 ~i~l~~~~~~~~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~ 277 (458)
.+.+.++.-|+.+|. +.-...|++++|++.+-..+...+++++..+-++|-+..
T Consensus 30 kV~i~l~aiG~~Pil------K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPIL------KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred eEEEEEeccCCCcce------ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 345555555555541 345678899999999999999999999999999985553
No 246
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=55.49 E-value=90 Score=23.73 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=34.8
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCC--CCceEEEE------cCeecCCCCCc
Q 012714 390 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIF------AGKQLEDGRTL 436 (458)
Q Consensus 390 g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~q~Li~------~G~~L~d~~tL 436 (458)
+...++.|++++|..++-+.+.++++++ ++.-.|+- ..+.|.|+...
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCCh
Confidence 6667899999999999999999999986 44444442 23466665543
No 247
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=55.36 E-value=31 Score=26.40 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.2
Q ss_pred ccCCceEEEeecc--cchHHHHHHHHhhhcCCCCCceEEEe
Q 012714 235 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 273 (458)
Q Consensus 235 ~~~g~~i~~~v~~--~dtV~~lK~~i~~~~gip~~~q~L~~ 273 (458)
+.+|.++.+.+.+ +-+.++|++++..+++++ .+.|-|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3678899999988 669999999999999998 555655
No 248
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=54.79 E-value=34 Score=26.54 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=30.0
Q ss_pred EEecC-CCcHHHHHHHHHh-hcCCCCC----ceEEEEcCee----cCCCCCccccCCCCCCEEEE
Q 012714 395 LEVES-SDTIDNVKAKIQD-KEGIPPD----QQRLIFAGKQ----LEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 395 ~~v~~-~~tV~~lK~~i~~-~~~~~~~----~q~Li~~G~~----L~d~~tL~~~~i~~~~~i~~ 449 (458)
+.++. .+|+++|-+.+-+ +.|+... .-.++|.... -..+++|+++||.+|+.+.+
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence 34443 4589999988654 6675332 3345554332 23457999999999999865
No 249
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=53.87 E-value=40 Score=25.21 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=33.2
Q ss_pred EEEcCCCcEEEEEec-CCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012714 384 FVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (458)
Q Consensus 384 ~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~~~~~~q~Li~~G 427 (458)
.++.. |....+.+. ++.|..+|+.+|+.+++.+.....+-|..
T Consensus 4 K~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 4 KVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 33343 456678888 99999999999999999876666777754
No 250
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=53.37 E-value=17 Score=30.12 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=43.3
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCcccc---CCCCCCEEEEEEE
Q 012714 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY---NIQKESTLHLVLR 452 (458)
Q Consensus 395 ~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~---~i~~~~~i~~~~~ 452 (458)
+-|+.+.||+++...|..+.++++++.-|..++..+..+.++++. .-.++-.+++...
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 379999999999999999999999886555566666677787765 2234556666543
No 251
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=53.23 E-value=60 Score=24.43 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=34.7
Q ss_pred EEEEEecCCcEEE-EEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecC
Q 012714 78 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (458)
Q Consensus 78 ~i~vk~~~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 123 (458)
.+.+. .+|.... +.+.++.|..+|+.+|+++.+.+...-.|.|..
T Consensus 3 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 34443 3444444 889999999999999999999997777887764
No 252
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=52.92 E-value=48 Score=34.35 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=55.1
Q ss_pred eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCC------CCCCeEEE-ecCeeccCCccccccccCCCCEEEEEEEec
Q 012714 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gi------p~~~q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~ 226 (458)
+++|...+ +...+-++.+..|++|-..+-+..+= +.....|. -+|..|+.+.||.+.|+.||+.+++.....
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 45666443 45778889999999999998887653 12334444 578899999999999999999999887543
No 253
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=52.55 E-value=30 Score=25.97 Aligned_cols=61 Identities=16% Similarity=0.355 Sum_probs=38.0
Q ss_pred ceEEEeecCCCcHHHHHHhhhcccC-CCCCCeeEEec------CeecCCCCCcccccccCCCeEEEEEe
Q 012714 315 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLR 376 (458)
Q Consensus 315 ~~~~l~v~~~~ti~~lK~~I~~~~~-i~~~~q~L~~~------g~~L~~~~~l~~y~I~~~~~l~l~~~ 376 (458)
+.+-.-..|+.|+.+++..|..++. +.|+...+... |.-|+.+..+.+- ..+++++.++.+
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 4456678899999999999999866 44444343321 4455555555544 335666665543
No 254
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=52.16 E-value=94 Score=22.92 Aligned_cols=60 Identities=20% Similarity=0.416 Sum_probs=43.6
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 390 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
|+ .++++...|+.+|- ++.|++++.....++|..+..++ -++.-+++||.|-++-=..||
T Consensus 9 g~--~~e~~~~~tv~dLL----~~l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 9 GK--EVEIAEGTTVADLL----AQLGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred CE--EEEcCCCCcHHHHH----HHhCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEEeecCC
Confidence 55 47777779998876 45678889999999999988543 345567889999765444444
No 255
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=51.59 E-value=45 Score=25.45 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.4
Q ss_pred CceEEEeecccchHHHHHHHHhhhcCCC--CCceEEE
Q 012714 238 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 272 (458)
Q Consensus 238 g~~i~~~v~~~dtV~~lK~~i~~~~gip--~~~q~L~ 272 (458)
+...++.|..++|..++-..+.++++++ +..+.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678999999999999999999999987 5557666
No 256
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=50.97 E-value=65 Score=24.28 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=35.0
Q ss_pred EEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE
Q 012714 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (458)
Q Consensus 384 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li 424 (458)
.|-.++|+...+.|.|++|+.++-+.+.+..++.|.+--|-
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 46678999999999999999999999999999987655443
No 257
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=50.68 E-value=49 Score=25.34 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.6
Q ss_pred eEEEeecccchHHHHHHHHhhhcCC--CCCceEEE
Q 012714 240 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 272 (458)
Q Consensus 240 ~i~~~v~~~dtV~~lK~~i~~~~gi--p~~~q~L~ 272 (458)
..++.|..++|+.++-.++.+++++ .+..+.|.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7889999999999999999999998 45557774
No 258
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=49.68 E-value=51 Score=25.27 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.9
Q ss_pred ccCceEeeecCC--CCcHHHHHHHHHHHhCCC
Q 012714 160 LTGKTITLEVES--SDTIDNVKAKIQDKEGIP 189 (458)
Q Consensus 160 ~~g~~~~~~v~~--~~tV~~LK~~I~~~~gip 189 (458)
.+|.+..+.+++ +.+..+|++.|+..++++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 567888899988 779999999999999998
No 259
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=49.33 E-value=20 Score=38.89 Aligned_cols=52 Identities=21% Similarity=0.430 Sum_probs=44.3
Q ss_pred cCceEeeecCC-CCcHHHHHHHHHHHhCCCCCCeEEE-ecCeeccCCccccccc
Q 012714 161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYN 212 (458)
Q Consensus 161 ~g~~~~~~v~~-~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~y~ 212 (458)
.|...+++... ..|+++||.+|+.+.|+...++.|. -+|..+..++.|..|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 56777777774 6699999999999999999999887 5677889999999886
No 260
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=48.91 E-value=79 Score=24.20 Aligned_cols=53 Identities=21% Similarity=0.443 Sum_probs=40.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCccccCCCCCCEEEEEE
Q 012714 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 390 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
+..+...+++..||+++- +..|+|..+..+++ +|+.-.= +|-+++||.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 456788999999998875 46799888887665 7876653 36788999997653
No 261
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.74 E-value=41 Score=31.88 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=56.6
Q ss_pred cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeec---cCCccccccccCCCCEEEE
Q 012714 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 221 (458)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~y~i~~~s~i~l 221 (458)
....+.|+..+|++...++++..|...++.-|.-..|...+-+.|. |--..+ +-.++|...++-+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3467889999999999999999999999999999998877666665 444444 2357899999888877654
No 262
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=47.60 E-value=1e+02 Score=26.52 Aligned_cols=110 Identities=22% Similarity=0.379 Sum_probs=71.5
Q ss_pred EEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccc----eeEeec-CCeEEEEEecCCc
Q 012714 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH----LVLRLR-GGMQIFVKTLTGK 87 (458)
Q Consensus 13 ~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~----l~~~~~-~~~~i~vk~~~g~ 87 (458)
|+-+.-.-+|.+.+=.++.+-.|| .|.+.+|..|+.. -.|+-..+..+. -.+... ..+.+.|+. -
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~---VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v---G 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKT---VPYGPARGTPVNHPDRKVINVGGEEVELTVKV---G 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCC---CCCCCCCCCcCCCCcceEEEECCEEEEEEEEE---e
Confidence 444556678999999999998886 6899999998642 234444443222 222222 345666653 3
Q ss_pred EEEEEEeC-CCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcc
Q 012714 88 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (458)
Q Consensus 88 ~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~ 136 (458)
.+-++++. .+.+..+++...+.+.++-+ +..|+-+....|++||-
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 56677777 67777777766665533322 34588899999999983
No 263
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=45.91 E-value=18 Score=28.65 Aligned_cols=24 Identities=46% Similarity=0.847 Sum_probs=20.0
Q ss_pred EEEEeeeeccCCCCccccccccccc
Q 012714 42 RLIFAGKQLEDGRTLADYNIQKEST 66 (458)
Q Consensus 42 ~l~~~g~~L~d~~tl~~y~i~~~st 66 (458)
.|+|.|++|.++.+|.|| +-.|..
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEK 26 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEK 26 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcc
Confidence 589999999999999999 555443
No 264
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=45.86 E-value=1.2e+02 Score=22.60 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=49.3
Q ss_pred eeecCCCCcHHHHHHHHHHHhCCCCCCeEEE-ecCeeccCCccccccccCCCCEEEEEEEec
Q 012714 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 166 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~ 226 (458)
.+.|+.......+-+.-++++.+|+..-..+ .+|--++...+-..+-++.|+.+.+..+-+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 3678888888888888899999987655444 778888888899999999999998887654
No 265
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=45.79 E-value=99 Score=23.94 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=31.1
Q ss_pred cchHHHHHHHHhh-hcCCCCC----ceEEEecCcc----cCCCCcccccccCCCCeEEEEEe
Q 012714 248 SDTIDNVKAKIQD-KEGIPPD----QQRLIFAGKQ----LEDGRTLADYNIQKESTLHLVLR 300 (458)
Q Consensus 248 ~dtV~~lK~~i~~-~~gip~~----~q~L~~~g~~----l~d~~tL~~y~I~~~~ti~l~~~ 300 (458)
..|+.+|-..+.. +.|+... ...++|.... -...++|+++||.+|+.+.+.-.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~ 69 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDF 69 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEET
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEc
Confidence 4599999887654 6665442 2456664433 34478999999999999876643
No 266
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=44.43 E-value=29 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=38.9
Q ss_pred EEecCCCcHHHHHHHHHhhcCCC-------CCceEEEEcCe-ec------CCCCCccccCCCCCCEEEEE
Q 012714 395 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGK-QL------EDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 395 ~~v~~~~tV~~lK~~i~~~~~~~-------~~~q~Li~~G~-~L------~d~~tL~~~~i~~~~~i~~~ 450 (458)
++|++++|..+|-+.++++..+. .+.-.|++.+- .| +-+++|.+. +.+|+.|++.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57999999999999999984432 24444555433 12 235789999 8999998763
No 267
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=44.21 E-value=1.2e+02 Score=23.40 Aligned_cols=58 Identities=24% Similarity=0.408 Sum_probs=42.7
Q ss_pred EEEecCCCcHHHHHHHHHhhc-C--CC--C-CceEEEEcC--eecCCCCCccccCCCCCCEEEEEE
Q 012714 394 TLEVESSDTIDNVKAKIQDKE-G--IP--P-DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 451 (458)
Q Consensus 394 ~~~v~~~~tV~~lK~~i~~~~-~--~~--~-~~q~Li~~G--~~L~d~~tL~~~~i~~~~~i~~~~ 451 (458)
-+.|+..+|+.++-++++... | ++ + ...++-++| +.+..+.++++-+|++-+.|.+..
T Consensus 18 Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 18 LVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 477999999999999998864 4 22 2 356777888 999999999999999999998765
No 268
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=43.65 E-value=1.6e+02 Score=25.25 Aligned_cols=110 Identities=20% Similarity=0.351 Sum_probs=71.0
Q ss_pred EEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeE----E-EEEeecCceeEEEEcCCCc
Q 012714 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL----H-LVLRLRGGMQIFVKTLTGK 391 (458)
Q Consensus 317 ~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l----~-l~~~~~~~~~i~vk~~~g~ 391 (458)
++-++..-+|.+.+=.+|.+-.|| .|.+.+|..|+...+ ||-..|..+ . .+......+.++|+. |.
T Consensus 5 fP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~Vp---yGPa~G~pv~h~~Rk~I~V~g~~veL~V~V--Gr 75 (150)
T TIGR03260 5 FPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKVP---YGPARGLPVNHPDRKTIRVKGEDVELRVQV--GR 75 (150)
T ss_pred echhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCCC---CCcccCCCCCCCcceEEEECCEEEEEEEEE--eE
Confidence 455666778999998888766554 578888888886432 333332111 1 111123456666665 33
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccC
Q 012714 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440 (458)
Q Consensus 392 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~ 440 (458)
+-+++...+.+.++++...+.+.++-+ +..|+-+....|++||-
T Consensus 76 -I~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 76 -IILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred -EEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhhh
Confidence 457777888888888877776554322 35688899999999993
No 269
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=43.38 E-value=2.2e+02 Score=24.75 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=68.3
Q ss_pred cccCCCCeEEEEEeecCcee--EEEEccCCceEEEee-----cCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCC
Q 012714 287 YNIQKESTLHLVLRLRGGMQ--IFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359 (458)
Q Consensus 287 y~I~~~~ti~l~~~~~~~~~--i~v~~~~g~~~~l~v-----~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~~~~ 359 (458)
|-+.+||.|.+..--.+... +.| ..+|. +++.. -.+-|.+++++.|++.+.=
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V-~~dG~-I~lP~iG~v~v~G~T~~e~~~~I~~~l~~------------------- 59 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPV-RPDGK-ITTPLVGDLVASGKTPTQLARDIEEKLAK------------------- 59 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEE-CCCCe-EeecccCeEEECCCCHHHHHHHHHHHHHH-------------------
Confidence 55777887777664433332 222 33342 33322 3688999999999987420
Q ss_pred cccccccCCCeEEEEEee-cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC----CceEEEE--cCe--e-
Q 012714 360 LADYNIQKESTLHLVLRL-RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP----DQQRLIF--AGK--Q- 429 (458)
Q Consensus 360 l~~y~I~~~~~l~l~~~~-~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~----~~q~Li~--~G~--~- 429 (458)
|=..+..++.+.... +...+|+|--.-.+.-.+.+.++.|+.++ |+..-|+.+ ....++- +|+ .
T Consensus 60 ---~~~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~a---i~~AGG~~~~a~~~~v~i~R~~~~~~~~~ 133 (165)
T TIGR03027 60 ---YVRNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDV---MIAVGGLTDFADGNRAVIVRTVDGEQKQI 133 (165)
T ss_pred ---hccCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHH---HHHcCCCCcccCCCeEEEEECCCCceEEE
Confidence 000112223332211 12234554333222224556778877665 555555532 2344443 232 1
Q ss_pred -------cCCCCCccccCCCCCCEEEE
Q 012714 430 -------LEDGRTLADYNIQKESTLHL 449 (458)
Q Consensus 430 -------L~d~~tL~~~~i~~~~~i~~ 449 (458)
+.+...-.++-+++||+|++
T Consensus 134 ~idl~~l~~~g~~~~n~~L~~gD~I~V 160 (165)
T TIGR03027 134 SVRLKDLIKDGDVTANVELKPGDVLII 160 (165)
T ss_pred EEEHHHHhhcCCccCCceeCCCCEEEE
Confidence 12222335667899999976
No 270
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=43.16 E-value=58 Score=26.31 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.4
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCC
Q 012714 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (458)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~ 38 (458)
|+|-..+|.+-++.|.-.-+=++||+|+-+|.|.+-
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 678889999999999999999999999999999987
No 271
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=43.11 E-value=56 Score=25.73 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=37.3
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc-C------eecCCCC---Cc--cccCCCCCCEEEEEEEecCC
Q 012714 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQLEDGR---TL--ADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 394 ~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~-G------~~L~d~~---tL--~~~~i~~~~~i~~~~~~~~g 456 (458)
.++++...||.+|-+.+++++. ...-+++.. | .+|-++. .+ .++-+++||.|.++--..||
T Consensus 22 ~~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 22 VLDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred eccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 3445567899999999998863 333333332 2 1222222 23 35679999999887655554
No 272
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=43.05 E-value=1.7e+02 Score=23.32 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=45.0
Q ss_pred CCeEEEEEec-CCcEEEEEEeCCCCHHHHHHHHhHH--hCCCC-C---CeEEEecCcc--cCCCcchhhcc-----cccc
Q 012714 75 GGMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPP-D---QQRLIFAGKQ--LEDGRTLADYN-----IQKE 140 (458)
Q Consensus 75 ~~~~i~vk~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~-~---~q~L~~~G~~--L~d~~tL~~~~-----i~~~ 140 (458)
..+.|.|... .+..+++.++.+.|+.++-+.+..+ .+..+ + +-.|--.|+. |..+.+|.+|. +..+
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~ 94 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRG 94 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcC
Confidence 3466677666 5667999999999999999888776 22222 1 3345455654 66778888874 4556
Q ss_pred cceeEEE
Q 012714 141 STLHLVL 147 (458)
Q Consensus 141 s~i~l~~ 147 (458)
..++|.+
T Consensus 95 ~~~~L~L 101 (106)
T PF00794_consen 95 KDPHLVL 101 (106)
T ss_dssp --EEEEE
T ss_pred CCcEEEE
Confidence 6666654
No 273
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=41.71 E-value=96 Score=23.73 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=40.9
Q ss_pred CceEEEeecccchHHHHHHHHhhhcCCCCCceEEEe-cCcccCCCCcccccccCCCCeEEEEEe
Q 012714 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLR 300 (458)
Q Consensus 238 g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~-~g~~l~d~~tL~~y~I~~~~ti~l~~~ 300 (458)
+..+.+...+..||+++- +.+|+|...--++. +|+..+- +|-+++|+.+.+...
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEec
Confidence 567888889999999853 45799999977766 6765543 478889999887643
No 274
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=41.60 E-value=90 Score=24.15 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=40.4
Q ss_pred EEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeE-EE------ecCcccCCCcchhh
Q 012714 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LI------FAGKQLEDGRTLAD 134 (458)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-L~------~~G~~L~d~~tL~~ 134 (458)
|.|-..+|..-++.|+...|++++-+.+..+.+...+.-- |+ .-.+.++|+..+.+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 5566789999999999999999999999999886554322 22 11355667654444
No 275
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=41.59 E-value=86 Score=24.07 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=30.5
Q ss_pred CCceEEEeecccchHHHHHHHHhhhcCCCC--CceEEE
Q 012714 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 272 (458)
Q Consensus 237 ~g~~i~~~v~~~dtV~~lK~~i~~~~gip~--~~q~L~ 272 (458)
++...++.|..++|+.++-..+.++++++. ..+.|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 466889999999999999999999999875 456665
No 276
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=41.31 E-value=43 Score=36.58 Aligned_cols=54 Identities=20% Similarity=0.406 Sum_probs=44.7
Q ss_pred CCceEEEeecc-cchHHHHHHHHhhhcCCCCCceEEEe-cCcccCCCCcccccccC
Q 012714 237 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQ 290 (458)
Q Consensus 237 ~g~~i~~~v~~-~dtV~~lK~~i~~~~gip~~~q~L~~-~g~~l~d~~tL~~y~I~ 290 (458)
.|.+.+++.+. ..|+++||.+|+...|+....+.|+- +|..|.-++.+..|.-.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~Sta 58 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTA 58 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccc
Confidence 57888888876 66999999999999999888887775 66678888999888743
No 277
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.26 E-value=1e+02 Score=24.56 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=34.7
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc--Ceec
Q 012714 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQL 430 (458)
Q Consensus 386 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~--G~~L 430 (458)
+...|.+..+.|+.+.|..+|+.++++..+.+.. ..|-|. |..|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edl 63 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDL 63 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCc
Confidence 3445777889999999999999999999998766 666664 5444
No 278
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=39.12 E-value=1.1e+02 Score=24.90 Aligned_cols=39 Identities=5% Similarity=0.194 Sum_probs=33.5
Q ss_pred EEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCccc
Q 012714 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (458)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L 126 (458)
.-...|++++|++.+-..+.+..++++..|-++|-+.--
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 445779999999999999999999999999988866543
No 279
>PRK07440 hypothetical protein; Provisional
Probab=38.94 E-value=1.6e+02 Score=21.71 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=44.3
Q ss_pred eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
|.|.+. |+. .++....||.+|-+ ..++++....+..+|+.+.- ....++-+++|+.|.++--..||
T Consensus 5 m~i~vN---G~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 5 ITLQVN---GET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred eEEEEC---CEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 445443 554 55567788888764 45778887888899988742 22345668899999887655443
No 280
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=38.65 E-value=1e+02 Score=24.88 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=41.9
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCc-eEEEEcCeecCCCCCcccc---CCCCCCEEEEEEE
Q 012714 394 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY---NIQKESTLHLVLR 452 (458)
Q Consensus 394 ~~~v~~~~tV~~lK~~i~~~~~~~~~~-q~Li~~G~~L~d~~tL~~~---~i~~~~~i~~~~~ 452 (458)
.+=|+.+.||.++...|..+..+++++ .-|..++.....+.|+++. .-.++-.+++...
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 355899999999999999999986654 6666677677788888875 1235556666543
No 281
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=38.48 E-value=1.1e+02 Score=23.60 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=36.3
Q ss_pred EEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEe
Q 012714 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273 (458)
Q Consensus 231 I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~ 273 (458)
|.|...+|...++.|.+..|+.++-.++.++.+...+.-+-++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv 47 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV 47 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4566788999999999999999999999999988777765554
No 282
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=38.44 E-value=91 Score=24.43 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=30.5
Q ss_pred cCCceEEEeecc-----cchHHHHHHHHhhhcCCCC-CceEEEecC
Q 012714 236 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 275 (458)
Q Consensus 236 ~~g~~i~~~v~~-----~dtV~~lK~~i~~~~gip~-~~q~L~~~g 275 (458)
.+|..+.+.+.. +-+..+|+.+|.+.+.+|+ ..+.|.|..
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 455566666653 5799999999999999998 557777744
No 283
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=38.21 E-value=85 Score=25.31 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=48.4
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCC---CCCceEEEEcCeecCCCC-CccccCCCCCCEEEEEEEecCCC
Q 012714 393 ITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQLEDGR-TLADYNIQKESTLHLVLRLRGGE 457 (458)
Q Consensus 393 ~~~~v~~~~tV~~lK~~i~~~~~~---~~~~q~Li~~G~~L~d~~-tL~~~~i~~~~~i~~~~~~~~g~ 457 (458)
..+.-.+..|..++-+.+.++.++ ++=.+..|+.|+.+.... .|-.+++..+ .+.+-+|-..-+
T Consensus 23 ~~l~~~~~~t~~~~l~~l~~~l~lh~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~-~l~l~vrs~~~~ 90 (104)
T PF14807_consen 23 QNLPSSSQRTLPEFLQRLQQKLRLHVVEVIGNEGIFACQLLNSSPVCLLHCRVNAG-TLDLWVRSSDSP 90 (104)
T ss_pred EeccccCcCCHHHHHHHHHHhcCceEEEEeCccceeeeeccCCCCeEEEEEEecCC-eEEEEEEcCCCC
Confidence 334334667888888888888773 455668999999999887 9999998777 888888865543
No 284
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=38.08 E-value=3.4e+02 Score=25.30 Aligned_cols=177 Identities=15% Similarity=0.209 Sum_probs=95.4
Q ss_pred hcccccccceeEEEEeecceeeEEEe-ccCceEee---ecC-CCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccc
Q 012714 134 DYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITL---EVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (458)
Q Consensus 134 ~~~i~~~s~i~l~~~~~~~~~i~v~~-~~g~~~~~---~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL 208 (458)
+|-+..|+.|.+.+--.......+.. .+|...-- .+. ...|+.++.+.|+.+..- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~--------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------G--------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------c---------
Confidence 46777888887766332222222222 33432111 233 577999999999876421 0
Q ss_pred cccccCCCCEEEEEEEecCCeEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc--eEEE---ecCcc------
Q 012714 209 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLI---FAGKQ------ 277 (458)
Q Consensus 209 ~~y~i~~~s~i~l~~~~~~~~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~--q~L~---~~g~~------ 277 (458)
+.-....+.+.+....+..++|.-.-.+.-.+.+....|+.++-+ .--|+.++. ...+ ..|+.
T Consensus 62 ---~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~---~AGG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 ---GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLA---LAGGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred ---CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHH---HcCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 011112344444444455666655444444566667778887543 334454432 2222 23332
Q ss_pred ----cCCCCcccccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCC
Q 012714 278 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (458)
Q Consensus 278 ----l~d~~tL~~y~I~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~ 342 (458)
+..+..-.++-+++||+|++... + .++|-..-++.-.+.+.++.|+.+. |..-.|+..
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~--~--~v~v~G~V~~pg~~~~~~~~tl~~a---l~~aGG~~~ 197 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA--P--VFYIYGEVQRPGAYRLERNMTVMQA---LAQGGGLTP 197 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC--c--cEEEEeEccCCeEEEeCCCCCHHHH---HHhcCCCCc
Confidence 23444556788999999998632 1 3556444445556777788777654 455555443
No 285
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.02 E-value=92 Score=24.74 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.7
Q ss_pred EcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEE
Q 012714 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (458)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~ 45 (458)
+..+|.|-.+.|+.+.|-.+++.|+.+..+++.+ ..|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 4568999999999999999999999999998876 55555
No 286
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=37.88 E-value=45 Score=27.69 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=46.1
Q ss_pred cCCeEEEEEecC---CcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEe-cCcccCCCcchhhcc---cccccceeEE
Q 012714 74 RGGMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN---IQKESTLHLV 146 (458)
Q Consensus 74 ~~~~~i~vk~~~---g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~~L~d~~tL~~~~---i~~~s~i~l~ 146 (458)
++.+.|.|.-.. .+.--+-|+.+.||+++..-|+.+.++++++ .++| ++..+..+.++++.. -.++..+++.
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~ 103 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADACKRDDGFLYVS 103 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHHHHHhcCCCCeEEEE
Confidence 344555554321 1222235899999999999999999999988 4444 554556666777642 2334455554
Q ss_pred E
Q 012714 147 L 147 (458)
Q Consensus 147 ~ 147 (458)
.
T Consensus 104 Y 104 (121)
T PTZ00380 104 V 104 (121)
T ss_pred E
Confidence 4
No 287
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=37.75 E-value=1.4e+02 Score=22.37 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=38.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcC--CCCCceEEEE------cCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714 391 KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRL 453 (458)
Q Consensus 391 ~~~~~~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~------~G~~L~d~~tL~~~~i~~~~~i~~~~~~ 453 (458)
+.|-.-.+|+.|+.+|+..|.+++. +|-+. .+.. .|=-|+.+-+.+|. ...|++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~-~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEP-ELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCC-CceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4566668999999999999999987 33332 2222 12233333344443 2468888777653
No 288
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=37.48 E-value=58 Score=24.95 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=33.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEE--cCe--ecCCCCC
Q 012714 393 ITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF--AGK--QLEDGRT 435 (458)
Q Consensus 393 ~~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~--~G~--~L~d~~t 435 (458)
-++.|.|..|++++=.++++++.+ .|++-.|++ +|. .|.|+..
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~ 63 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTY 63 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccc
Confidence 479999999999999999999997 667666554 444 6776643
No 289
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.17 E-value=95 Score=29.51 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccC---CCcchhhcccccccceeE
Q 012714 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 145 (458)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~---d~~tL~~~~i~~~s~i~l 145 (458)
..-.+.|+..+|+++..++++..|...+...+.-..+...+.-.|. |--+.+. -.++|...++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3456888989999999999999999999999998887665444443 2223332 237888888877776654
No 290
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=35.04 E-value=1.3e+02 Score=23.65 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=30.0
Q ss_pred ccCceEeeecC-----CCCcHHHHHHHHHHHhCCCC-CCeEEEecC
Q 012714 160 LTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 199 (458)
Q Consensus 160 ~~g~~~~~~v~-----~~~tV~~LK~~I~~~~gip~-~~q~L~~~g 199 (458)
.+|....+.++ ++.+..+|+++|++.+.+|+ ....|.|..
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 34555666666 46899999999999999987 556666643
No 291
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=34.67 E-value=18 Score=36.02 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=42.9
Q ss_pred ecCCcEEEEEEe-CCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcch
Q 012714 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (458)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL 132 (458)
..+|....+.+. .+..+..+|.++....+++++.|.+.+.|..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456777777777 67789999999999999999999999999999887444
No 292
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=34.38 E-value=1.8e+02 Score=22.02 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=38.2
Q ss_pred EEEEcCCCc----EEEEEecCCCcHHHHHHHHHhhcCC--CCCceEEE-E---c--CeecCCCCCc
Q 012714 383 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI-F---A--GKQLEDGRTL 436 (458)
Q Consensus 383 i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li-~---~--G~~L~d~~tL 436 (458)
|.|-..++. .-.+.|.+++|+.++-+++.+++++ .+++-.|. + . .+.|.++...
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~p 70 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECP 70 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBH
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCch
Confidence 334444444 6789999999999999999999998 45566663 2 1 2467766543
No 293
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=34.26 E-value=69 Score=24.60 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred eEEEEc-CCCcEEEEEeecCccHHHHHHHhhcccCCCC
Q 012714 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (458)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~ 38 (458)
.||... .++..-++.|.+++|..+|=..+.++.++..
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~ 43 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTD 43 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 455544 4567888999999999999999999999865
No 294
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=34.04 E-value=85 Score=24.55 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=34.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceE-EEEcCeecC
Q 012714 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLE 431 (458)
Q Consensus 391 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~-Li~~G~~L~ 431 (458)
..++|.|+++.|=.++|+.++.-+|+++...+ +.+.|+.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 57899999999999999999999999886665 666777544
No 295
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=33.98 E-value=83 Score=24.00 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=33.7
Q ss_pred ccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEec
Q 012714 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274 (458)
Q Consensus 235 ~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~ 274 (458)
..+|.+..+.....=|.+.|+++|+.-+.+|++..-+.|-
T Consensus 6 ~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 6 SFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred EeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 3567777777777779999999999999999988888883
No 296
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=33.50 E-value=2.1e+02 Score=21.54 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHhC-----CCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 172 SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 172 ~~tV~~LK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
..||++|++.+.++.. ......+..-+++.-. .+.-+++|+.|-++.+..||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCCCCCC
Confidence 4799999999988752 1112223333443222 24468899999887765554
No 297
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=33.09 E-value=1.4e+02 Score=25.37 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=60.3
Q ss_pred cCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCC------------ccccccccccccceeEeecCCeEEEEEecCC
Q 012714 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86 (458)
Q Consensus 19 ~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~t------------l~~y~i~~~sti~l~~~~~~~~~i~vk~~~g 86 (458)
|+-.|+.+-+|.+-+.....+.=..-++|+.|++... |..|.+.+++.-.+.-.-.++-.+.+.+-.|
T Consensus 23 Pt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKkG 102 (149)
T PF10787_consen 23 PTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKKG 102 (149)
T ss_pred cHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEeccC
Confidence 6778999999988877777777789999999987532 4566666665533322223456677887777
Q ss_pred c-EEEEEEeC-CCCHHHHHHH
Q 012714 87 K-TITLEVES-SDTIDNVKAK 105 (458)
Q Consensus 87 ~-~~~l~v~~-~~tV~~lK~~ 105 (458)
+ .+++-+.+ +|-|.-+|+.
T Consensus 103 K~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 103 KKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred cceeEEEEEecccHHHHHHHh
Confidence 5 57887766 5567777765
No 298
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=32.70 E-value=1.2e+02 Score=25.73 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=62.0
Q ss_pred eecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCc------------cccccccCCCCEEEEEEEecCCeEEEEE
Q 012714 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR------------TLADYNIQKESTLHLVLRLRGGMQIFVK 234 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~------------tL~~y~i~~~s~i~l~~~~~~~~~I~V~ 234 (458)
+..-|+..|+.|-.+.+-.-.+..+.-.+.++|+.|++.. -|..|.+.+|+.=...-+..+|-++.+.
T Consensus 19 vt~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~ 98 (149)
T PF10787_consen 19 VTSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVID 98 (149)
T ss_pred eecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEE
Confidence 3444666777776666655556667778889999998643 4667888888775444455677888888
Q ss_pred ccCCc-eEEEeecc-cchHHHHHHH
Q 012714 235 TLTGK-TITLEVES-SDTIDNVKAK 257 (458)
Q Consensus 235 ~~~g~-~i~~~v~~-~dtV~~lK~~ 257 (458)
+..|+ .+++.+-+ .|-|.-+|+.
T Consensus 99 tKkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 99 TKKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred eccCcceeEEEEEecccHHHHHHHh
Confidence 87775 66777765 4456555544
No 299
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=32.14 E-value=1.8e+02 Score=21.85 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEcCCCcE-EEEEec-CCCcHHHHHHHHHhhcCC
Q 012714 385 VKTLTGKT-ITLEVE-SSDTIDNVKAKIQDKEGI 416 (458)
Q Consensus 385 vk~~~g~~-~~~~v~-~~~tV~~lK~~i~~~~~~ 416 (458)
-|..+.+. ..+.++ +.-+|.+||..|.++.++
T Consensus 3 YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 3 YKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred EEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 34444433 356666 355999999999887665
No 300
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=31.96 E-value=1.7e+02 Score=23.23 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.7
Q ss_pred EEeccCceEeeecCCCCcHHHHHHHHHHHhCCCC-CCeEEE
Q 012714 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 196 (458)
Q Consensus 157 v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~ 196 (458)
|--.++...++.++.+.||+++-..+..++.++. .+.+|.
T Consensus 7 IFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 7 VFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 3334566678999999999999999999998876 444443
No 301
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.96 E-value=1.2e+02 Score=23.78 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=33.7
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceE-EEEcCee
Q 012714 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 429 (458)
Q Consensus 390 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~-Li~~G~~ 429 (458)
...+.|.|++..|=.++|+.++.-+|+++...+ ++..|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 467899999999999999999999999887665 5556654
No 302
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.85 E-value=2.5e+02 Score=22.01 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHhhcCCCCCceEEEEcCeec------C---CCCCc--cccCCCCCCEEEEEEEecCC
Q 012714 399 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL------E---DGRTL--ADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 399 ~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L------~---d~~tL--~~~~i~~~~~i~~~~~~~~g 456 (458)
.-+||+++-..|..+.--.+.+ .++.+|..- - |-..| .+|.+++||.|.++....||
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTLHGG 101 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEeccCC
Confidence 3458998888777765333333 566666532 1 22333 57899999999877776665
No 303
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=31.05 E-value=2.1e+02 Score=21.47 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=35.6
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~ 425 (458)
|.+..++.+.-.++|.|+.|+.+--.+.-+..|+.++.....-
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~ 44 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFR 44 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEE
Confidence 4566788787789999999999999999999999887666543
No 304
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=31.03 E-value=22 Score=35.35 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=44.1
Q ss_pred eccCceEeeecC-CCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCcccc
Q 012714 159 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209 (458)
Q Consensus 159 ~~~g~~~~~~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~ 209 (458)
..+|..+.+.+. .+..+..+|.++.+..+|++..|.+.+.|..|.|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 356777777777 788999999999999999999999999999998886554
No 305
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=30.97 E-value=2e+02 Score=23.56 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=38.5
Q ss_pred EEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcc-cCCCcchhhcc---cccccceeEEE
Q 012714 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYN---IQKESTLHLVL 147 (458)
Q Consensus 91 l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~-L~d~~tL~~~~---i~~~s~i~l~~ 147 (458)
+-|+.+.||.++...|+.+.++++++--++|-|.. ...+.++++.. -.++..+++..
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Y 105 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTY 105 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEE
Confidence 45899999999999999999988876555555543 35566666532 12244555544
No 306
>PRK08453 fliD flagellar capping protein; Validated
Probab=30.31 E-value=1.6e+02 Score=32.14 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=52.6
Q ss_pred ccCCceEEEeecccchHHHHHHHHhh-----------hcCCCCCceEEEecCcccCCCCcc------cccccCCCCeEEE
Q 012714 235 TLTGKTITLEVESSDTIDNVKAKIQD-----------KEGIPPDQQRLIFAGKQLEDGRTL------ADYNIQKESTLHL 297 (458)
Q Consensus 235 ~~~g~~i~~~v~~~dtV~~lK~~i~~-----------~~gip~~~q~L~~~g~~l~d~~tL------~~y~I~~~~ti~l 297 (458)
..+|++++++|.+..|+++|+.+|-+ +.| ...-|+|+..+...-.+..+ ..-.+..|.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 44689999999999999999999984 223 22247777766665444333 3233333321111
Q ss_pred EEeecCceeEEEEccCCceEEEee
Q 012714 298 VLRLRGGMQIFVKTLTGKTITLEV 321 (458)
Q Consensus 298 ~~~~~~~~~i~v~~~~g~~~~l~v 321 (458)
..--.+...|++|..+|+..++.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 122245567888888886665444
No 307
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=30.21 E-value=2.4e+02 Score=21.21 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=34.1
Q ss_pred EEecC-CCcHHHHHHHHHhhcC-----CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 395 LEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 395 ~~v~~-~~tV~~lK~~i~~~~~-----~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
+++++ ..||.+|++.+.+++. ......+.-.+++.-.+ +.-+++||.|-++--..||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45543 5799999999998863 12223333445543322 3358999999765433433
No 308
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.88 E-value=89 Score=28.29 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=30.8
Q ss_pred ccccC-CCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcc
Q 012714 286 DYNIQ-KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337 (458)
Q Consensus 286 ~y~I~-~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~ 337 (458)
++|.+ .|+|+|++--.-.+.+|.. ...+.|.+.||.+.+.++|+..
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~------Q~~Vpv~~~Dt~etl~~RV~~~ 172 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIA------QAAVPVLPGDTAETLEARVLEQ 172 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEE------EEeeeecCCCCHHHHHHHHHHH
Confidence 34444 7899998853222222222 2258899999999999999874
No 309
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=29.53 E-value=88 Score=23.99 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=31.4
Q ss_pred eEEEeecCCCcHHHHHHhhhcccCCCCCC-eeEEe--cC--eecCCC
Q 012714 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AG--KQLEDG 357 (458)
Q Consensus 316 ~~~l~v~~~~ti~~lK~~I~~~~~i~~~~-q~L~~--~g--~~L~~~ 357 (458)
.-||.|.|+.|+++|=..+..++++.-.+ ..|.+ +| +.|.++
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 34899999999999999999999876554 44443 34 567663
No 310
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=28.62 E-value=94 Score=27.89 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=49.5
Q ss_pred CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeee--ccCCCCccccccccccccceeEeecCCeEEEEEecC
Q 012714 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~--L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~ 85 (458)
.+|+.+.-..+.++.++.. .--..+.|.|+.+|.. +=|..+-++|.+....--.-..-+.++|.+.|-..+
T Consensus 44 ~tG~~~e~~f~~~~kve~~-------~~e~~~~q~ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~v~v~~~~ 116 (184)
T TIGR00038 44 LTGKVLEKTFRSGEKVEKA-------DVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEVSVTFYN 116 (184)
T ss_pred CCCCEEEEEeCCCCEEEcc-------cEEeEEEEEEEECCCEEEEeCCCCccceEcCHHHHHHHHhhcCCCCEEEEEEEC
Confidence 5788777777777743321 1122445788887743 335557777777544221222335678888888888
Q ss_pred CcEEEEEEeC
Q 012714 86 GKTITLEVES 95 (458)
Q Consensus 86 g~~~~l~v~~ 95 (458)
|+.+.++++.
T Consensus 117 ~~~i~v~lP~ 126 (184)
T TIGR00038 117 GEPIGVELPN 126 (184)
T ss_pred CEEEEEECCC
Confidence 8887777654
No 311
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=28.50 E-value=1.4e+02 Score=24.16 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=32.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---CceEEEEcC
Q 012714 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG 427 (458)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~---~~q~Li~~G 427 (458)
|+|-..+|++..+.|....+-.++|.++-.++|.+. +--..+.+|
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc
Confidence 566778899999999999999999999999999866 444555566
No 312
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=28.46 E-value=2e+02 Score=21.47 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=43.9
Q ss_pred EeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE-ecCeeccCCccccccccCCCCEEEEE
Q 012714 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l~ 222 (458)
..+.|+.+.....+-+.-++.+.+|+..-.++ ..|--.+..+|-.+--++.|+.|.|.
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 34778888888888888999999998776666 66888888888888888899988763
No 313
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=28.45 E-value=1.3e+02 Score=22.93 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=33.0
Q ss_pred ccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEec
Q 012714 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198 (458)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~ 198 (458)
.+|.+..+.++..-|-+.|+++|...+.+|++..-+.|-
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 456677777888889999999999999999988777773
No 314
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=28.45 E-value=2.3e+02 Score=23.18 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCCcccccccCCCCeEEEEEeecCceeEEEEc---cCCceEEEeecCCCc--HHHHHHhhhc
Q 012714 280 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKT---LTGKTITLEVESSDT--IDNVKAKIQD 336 (458)
Q Consensus 280 d~~tL~~y~I~~~~ti~l~~~~~~~~~i~v~~---~~g~~~~l~v~~~~t--i~~lK~~I~~ 336 (458)
++.++--||+..||.|...... +...+.+. ..+.|+-+.+.+... ++++..++..
T Consensus 17 ~n~Pf~a~glA~gDvV~~~~~~--g~~~~~~~v~~sGnsTiRv~~~~~~~~~~~~v~~~l~~ 76 (117)
T PF14085_consen 17 DNIPFFAYGLALGDVVRAEPDD--GELWFQKVVESSGNSTIRVIFDDPGPDDIEAVREELEA 76 (117)
T ss_pred EecccccCCCCCCCEEEEEeCC--CeEEEEEEEecCCCEEEEEEEcCCcchhHHHHHHHHHH
Confidence 4578899999999999988654 44455544 455677777776666 6777666663
No 315
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=28.19 E-value=2.5e+02 Score=22.61 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=37.8
Q ss_pred EEEeCCCCHHHHHHHHhHHhCCCCCCeE-EEecCcccCCCcchhhcc---cccccceeEEEE
Q 012714 91 LEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADYN---IQKESTLHLVLR 148 (458)
Q Consensus 91 l~v~~~~tV~~lK~~i~~~~gip~~~q~-L~~~G~~L~d~~tL~~~~---i~~~s~i~l~~~ 148 (458)
+=|+.+.||+++...|..+..+++++=- |+.++.....+.++++.. -.++..+++...
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 3478999999999999999999886533 345555556777887642 234456665543
No 316
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=27.75 E-value=2.7e+02 Score=21.55 Aligned_cols=59 Identities=3% Similarity=0.170 Sum_probs=41.9
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCee-cC-CCCCcccc--CCCCCCEEEEEEE
Q 012714 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LE-DGRTLADY--NIQKESTLHLVLR 452 (458)
Q Consensus 394 ~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~-L~-d~~tL~~~--~i~~~~~i~~~~~ 452 (458)
.+.|+.+.||.++..-|..+.++.+++-..+|=++. +. .+.++++. +-.++..+++...
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys 81 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYC 81 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEe
Confidence 577999999999999999999998777555555554 33 44666554 2256677766554
No 317
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=27.37 E-value=1.1e+02 Score=23.70 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=37.4
Q ss_pred eecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCee--------cc------CCccccccccCCCCEEEEEE
Q 012714 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LE------DGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~--------L~------d~~tL~~y~i~~~s~i~l~~ 223 (458)
++++++.|..++-+.++++-.+....=.+..+++. |+ =+++|.+. +.+|..|.+.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 57889999999999999874443333333333333 22 26789999 99998887753
No 318
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.25 E-value=2.5e+02 Score=27.67 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=44.5
Q ss_pred cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (458)
Q Consensus 161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~ 228 (458)
+|+. +++..+.|+.+|-+. .+++.+...+..||+.+. .....++-+++|+.|.++-...||
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCC
Confidence 3554 455667788887654 588888888889999884 223456679999999998777665
No 319
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=26.59 E-value=1.4e+02 Score=30.37 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=64.2
Q ss_pred cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeeccC---CccccccccCCCCEEEEEEEe
Q 012714 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRL 225 (458)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~s~i~l~~~~ 225 (458)
...+|.|+.++|..++-..+.++-...++..+...-++....+.|. |--++..| +++|.+..+-+...+.|+.+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4567889999999999999999999999999999888888887776 77777633 589999999998888777665
Q ss_pred cCC
Q 012714 226 RGG 228 (458)
Q Consensus 226 ~~~ 228 (458)
++.
T Consensus 393 r~t 395 (506)
T KOG2507|consen 393 RAT 395 (506)
T ss_pred Ccc
Confidence 543
No 320
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=25.98 E-value=2.3e+02 Score=22.52 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=31.1
Q ss_pred EEEccCCceEEEeecccchHHHHHHHHhhhcCCCCC-ceEEE
Q 012714 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI 272 (458)
Q Consensus 232 ~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~-~q~L~ 272 (458)
-|...++-..++.+..+.||++|-.++..+..++.. .++|.
T Consensus 6 RIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 6 RVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 344555666788888999999999999999887773 34444
No 321
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=25.61 E-value=96 Score=23.58 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.1
Q ss_pred EEEEEeCCCCHHHHHHHHhHHh
Q 012714 89 ITLEVESSDTIDNVKAKIQDKE 110 (458)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~ 110 (458)
++++++.+.|+.++|+.+.+.-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 5788999999999999987753
No 322
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=25.21 E-value=52 Score=24.85 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=22.3
Q ss_pred HHHHHhCCCCCCeEEE---ecCeeccCCccccccccCC
Q 012714 181 KIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQK 215 (458)
Q Consensus 181 ~I~~~~gip~~~q~L~---~~g~~L~d~~tL~~y~i~~ 215 (458)
.|+++..+.|+.-.|. ..+.+|+=.++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 4788889999988888 4577899999999999985
No 323
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=25.17 E-value=7.2e+02 Score=25.07 Aligned_cols=212 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred cccccCCCCEEEEEEEecCCeEE------------EEEccCCceEEEeecc----cchHHHHHHHHhhhcCCCCCceEEE
Q 012714 209 ADYNIQKESTLHLVLRLRGGMQI------------FVKTLTGKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI 272 (458)
Q Consensus 209 ~~y~i~~~s~i~l~~~~~~~~~I------------~V~~~~g~~i~~~v~~----~dtV~~lK~~i~~~~gip~~~q~L~ 272 (458)
.+|-|..|+.|.+.+-....... +....+|.-.-..+-. .-|+.++++.|..++
T Consensus 83 ~~Y~igpGDvL~I~V~~~peL~~~~~~~~~~~~~g~~V~~dG~I~~P~vG~V~vaG~T~~e~~~~I~~~L---------- 152 (379)
T PRK15078 83 YEYRVGPGDVLNVTVWDHPELTTPAGQYRSASDTGNWVHADGTIFYPYIGKVHVAGKTVTEIRSDITGRL---------- 152 (379)
T ss_pred CCcEECCCCEEEEEEecCcccccccccccccccCCCEECCCCeEeeccCceEEECCCCHHHHHHHHHHHH----------
Q ss_pred ecCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecC-CCcHHHHHHhhhcccCCCCCCee----E
Q 012714 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQR----L 347 (458)
Q Consensus 273 ~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~ti~~lK~~I~~~~~i~~~~q~----L 347 (458)
-+.-....+.+......+..|+|...-.+.-.+.+.+ ..|+.+. |..-.|+...-.. |
T Consensus 153 --------------~~~~~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tllda---Ia~AGG~~~~a~~~~V~l 215 (379)
T PRK15078 153 --------------AKYIESPQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDA---INAAGGLTDDADWRNVVL 215 (379)
T ss_pred --------------HHhccCCeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHH---HHHccCCCcccccceEEE
Q ss_pred EecC--------eecCCCCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEe-cCCCcHHHHHHHHHhhcC-CC
Q 012714 348 IFAG--------KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV-ESSDTIDNVKAKIQDKEG-IP 417 (458)
Q Consensus 348 ~~~g--------~~L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~~-~~ 417 (458)
.=+| ..+.++..-.++-++++++|++-.. ...+++|--.-++.-.+.+ .++.|+.+.-.+..--.. ..
T Consensus 216 ~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~--~~~~v~V~GeV~~Pg~~~~~~~~~TL~~Al~~AGGl~~~~a 293 (379)
T PRK15078 216 THNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRN--DDLKVFVMGEVKKQSTLKMDRSGMTLTEALGNAEGIDQTTA 293 (379)
T ss_pred EECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCC--CCcEEEEeeecccceEEecCCCCCCHHHHHHhcCCCCcccc
Q ss_pred CCceEEEEcCee----------------cCCCCCcc---ccCCCCCCEEEE
Q 012714 418 PDQQRLIFAGKQ----------------LEDGRTLA---DYNIQKESTLHL 449 (458)
Q Consensus 418 ~~~q~Li~~G~~----------------L~d~~tL~---~~~i~~~~~i~~ 449 (458)
...+.+++.+.. |.|...+. .|-++++|+|++
T Consensus 294 d~~~V~V~R~~~~~~~~~~~~~~vy~ldl~~~~~~~la~~f~Lqp~DiVyV 344 (379)
T PRK15078 294 DATGIFVIRPLKGEGGRNGKIANIYQLDASDATALVMGTEFRLQPYDIVYV 344 (379)
T ss_pred CcccEEEEECCCCccccCCCcceEEEEeCCChhhhhcccCCccCCCCEEEE
No 324
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=25.11 E-value=2e+02 Score=28.42 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=48.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhc--------------C-CCCCceEEEEcCeecCCCCCccccC---CCCCCEEEEEEEec
Q 012714 393 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRLR 454 (458)
Q Consensus 393 ~~~~v~~~~tV~~lK~~i~~~~--------------~-~~~~~q~Li~~G~~L~d~~tL~~~~---i~~~~~i~~~~~~~ 454 (458)
..+.......|..++..|.+++ . -|.+...|.++|++|..+.||+... =+.+.-|.|..|.+
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3577777788999999999988 2 3567788999999999999988764 25555666888765
Q ss_pred C
Q 012714 455 G 455 (458)
Q Consensus 455 ~ 455 (458)
+
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 4
No 325
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.90 E-value=67 Score=32.73 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=46.1
Q ss_pred ecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEE
Q 012714 168 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (458)
Q Consensus 168 ~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~ 222 (458)
+..-.-|-.+|...|.++.||+-++.+.+-+|+.|.-.+||++-|++....+.+.
T Consensus 55 k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~ 109 (568)
T KOG2561|consen 55 KCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVA 109 (568)
T ss_pred hcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHH
Confidence 3444557788999999999999999999999999999999999998876555443
No 326
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=24.76 E-value=4.5e+02 Score=22.62 Aligned_cols=105 Identities=22% Similarity=0.381 Sum_probs=61.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCC----EEEEEEEecCCeEEEEEccCCceEEEee
Q 012714 170 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRLRGGMQIFVKTLTGKTITLEV 245 (458)
Q Consensus 170 ~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s----~i~l~~~~~~~~~I~V~~~~g~~i~~~v 245 (458)
-..+|.+.|-.++++..|| .|..-.|..|-..- -||--.|. .-.-.... +|-.+-++...| .+-+++
T Consensus 10 L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V-~g~~veL~V~VG-rI~le~ 80 (150)
T TIGR03260 10 LKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRV-KGEDVELRVQVG-RIILEL 80 (150)
T ss_pred CCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCC---CCCcccCCCCCCCcceEEEE-CCEEEEEEEEEe-EEEEEe
Confidence 3456888888888887776 46666666664321 12222221 11111111 233333333333 456666
Q ss_pred cccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCccccc
Q 012714 246 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287 (458)
Q Consensus 246 ~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y 287 (458)
...+.+..+++...+.+..+.+ +..|+-|....|+.||
T Consensus 81 ~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 81 EDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred cCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 7888999999888887764443 3456678888899888
No 327
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=24.74 E-value=3e+02 Score=20.55 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=45.4
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCccccCCCCCCEEEEE
Q 012714 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLV 450 (458)
Q Consensus 393 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tL~~~~i~~~~~i~~~ 450 (458)
-.+.|..+.....+-+-.++++.+|+..-.+|- .|--....+|..+-.++-|+.+.++
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 357788888888888899999999888888777 4778888899999999999988763
No 328
>PRK12426 elongation factor P; Provisional
Probab=24.72 E-value=68 Score=28.81 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeec--cCCCCccccccccccccceeEeecCCeEEEEEecC
Q 012714 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L--~d~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~ 85 (458)
.+|+.+.-...++|+++.. .+. ..+.|.|+-+|..+ =|..|.+.+.+....-=.-..-+.++|.+.|-..+
T Consensus 45 ~tG~~~e~tf~s~ek~e~a--~ve-----~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~~~ 117 (185)
T PRK12426 45 DSDVVVERNFKAGQEVKEA--QFE-----PRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYD 117 (185)
T ss_pred CCCCeEEEEECCCCeEEEe--EEE-----eeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEEEC
Confidence 4788888888888887553 222 23458899888764 35677777777654221122235678888888889
Q ss_pred CcEEEEEEeC
Q 012714 86 GKTITLEVES 95 (458)
Q Consensus 86 g~~~~l~v~~ 95 (458)
|+.+.++++.
T Consensus 118 ~~~i~v~lP~ 127 (185)
T PRK12426 118 GTVFSVELPH 127 (185)
T ss_pred CEEEEEECCC
Confidence 9887777654
No 329
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=23.74 E-value=1.7e+02 Score=22.56 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=42.3
Q ss_pred cCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEecCcc---------cCCCCcccccccCCCCeEEEE
Q 012714 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ---------LEDGRTLADYNIQKESTLHLV 298 (458)
Q Consensus 236 ~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~g~~---------l~d~~tL~~y~I~~~~ti~l~ 298 (458)
.+|......++++.|-++|.+++.+....+.++ +.+-|...+ ++=...++=|.+...+.+.++
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ih 79 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIH 79 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEE
Confidence 457777778888999999999999999988876 666664432 111223444566665555443
No 330
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=23.59 E-value=1.4e+02 Score=21.84 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=26.5
Q ss_pred ccccccccCCCCEEEEEEEecCCeEEEEEccCCceEEEe
Q 012714 206 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 244 (458)
Q Consensus 206 ~tL~~y~i~~~s~i~l~~~~~~~~~I~V~~~~g~~i~~~ 244 (458)
+-|.+.|+.+|+.+.+.-+...+.++.+... |..+.+.
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~~-~~~i~L~ 63 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKVD-GSRIALS 63 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEET-TEEEEES
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEEC-CEEEEcC
Confidence 4578899999999999977665666666664 5555544
No 331
>PRK06347 autolysin; Reviewed
Probab=23.41 E-value=5e+02 Score=28.00 Aligned_cols=211 Identities=11% Similarity=0.043 Sum_probs=103.0
Q ss_pred EEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecceeeEEE----------
Q 012714 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK---------- 158 (458)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~~i~v~---------- 158 (458)
....|...||+.. |..++|++++.. .-+++ |..-.+..|..+.+-......-....+
T Consensus 331 ~~Y~V~sGDTL~~----IA~rygvSv~eL-~~~N~--------l~~d~L~~Gq~L~VP~~~~~~~~~t~~~~~~~~~~~~ 397 (592)
T PRK06347 331 KIYTVVKGDSLWR----IANNHKVTVANL-KAWNN--------LKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKP 397 (592)
T ss_pred eEEEeCCCCCHHH----HHHHhCCCHHHH-HHHhC--------CCccccccCcEEEEecccccccccccccccccccccc
Confidence 4466789999877 667777776421 11222 222346666665543210000000000
Q ss_pred --eccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCe----EE-
Q 012714 159 --TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM----QI- 231 (458)
Q Consensus 159 --~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~----~I- 231 (458)
..........|.+.+|+.. |..++|++++... .++ .+..-.+..|..|.+-....... +.
T Consensus 398 ~~~~~~~~~~ytVk~GDTL~s----IA~kygVSv~~L~-~~N--------~l~s~~L~~Gq~L~IP~~~~~~~~t~~~s~ 464 (592)
T PRK06347 398 STGTSTNAKVYTVVKGDSLWR----IANNNKVTIANLK-SWN--------NLKSDFIYPGQKLKVSAGSTSNTNTSKPST 464 (592)
T ss_pred ccccccCceeEEecCCCCHHH----HHHHhCCCHHHHH-HHh--------CCCcceeccCcEEEEecCCccccccccccc
Confidence 0011234567888888885 6788888766432 111 12222466677665542110000 00
Q ss_pred ------EEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEEEeecCce
Q 012714 232 ------FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (458)
Q Consensus 232 ------~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~~ 305 (458)
...........+.|...||+.. |..++|+.+.+.. .-+.+..-.|..|..|.+-......-
T Consensus 465 ~~~~~k~~s~~~~~~~~YtVk~GDTL~s----IAkkygVSv~~L~---------~~N~l~s~~L~~GQ~L~Ip~~~~~s~ 531 (592)
T PRK06347 465 NTNTSKPSTNTNTNAKVYTVAKGDSLWR----IANNNKVTIANLK---------SWNNLKSDFIYPGQKLKVSAGSTTNN 531 (592)
T ss_pred ccccccccccccccceeeeecCCCCHHH----HHHHHCCCHHHHH---------HhcCCCcccccCCcEEEEecCccccc
Confidence 0000112345688999999986 4566777766432 11112223577777766543211000
Q ss_pred eEEE-----EccCCceEEEeecCCCcHHHHHHhhhcccCCCC
Q 012714 306 QIFV-----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (458)
Q Consensus 306 ~i~v-----~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~ 342 (458)
.-.. ...........|.++||...|- +++|+..
T Consensus 532 ~~t~~~s~~~~~~~~~~~Y~Vk~GDTL~sIA----~KygvSv 569 (592)
T PRK06347 532 TNTAKPSTNKPSNSTVKTYTVKKGDSLWAIS----RQYKTTV 569 (592)
T ss_pred ccccCCccCCccCccceeeecCCCCcHHHHH----HHhCCCH
Confidence 0000 0001124578999999999873 4555444
No 332
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=23.29 E-value=3.2e+02 Score=20.42 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=50.5
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-cCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (458)
Q Consensus 394 ~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g 456 (458)
.+.|......-.+-+-.++++++|+..--+|- +|--+...+|-..+-++.|+.+.++-|-|-|
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG 82 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence 56788888888888889999999887666665 5777888899999999999999887775533
No 333
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=22.69 E-value=2.4e+02 Score=21.41 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHhhcCCCCCceEEEE--cCeecCCCCCccccCCCCCCEE
Q 012714 401 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTL 447 (458)
Q Consensus 401 ~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d~~tL~~~~i~~~~~i 447 (458)
.+..+|+.+..+.++++.+..+|.. +|-+++|+.-+. .+.++..+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~--tLp~nT~l 67 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQ--TLPDNTVL 67 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHC--CSSSSEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHh--hCCCCCEE
Confidence 5799999999999999977777766 677777664332 24444444
No 334
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=64 Score=25.94 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=29.2
Q ss_pred HHHHHhhhcccCCCC------------------CCeeEEec----C-eecCC-CCCcccccccCCCeEEEE
Q 012714 328 DNVKAKIQDKEGIPP------------------DQQRLIFA----G-KQLED-GRTLADYNIQKESTLHLV 374 (458)
Q Consensus 328 ~~lK~~I~~~~~i~~------------------~~q~L~~~----g-~~L~~-~~~l~~y~I~~~~~l~l~ 374 (458)
..++++||....+|+ ..+.|+.+ . =.|.+ .++|+.|||.+...+.+.
T Consensus 41 ~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 41 VFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETEISFF 111 (127)
T ss_pred HHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchhhhhh
Confidence 445677777666554 22334443 2 35664 779999999887766554
No 335
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=3.3e+02 Score=20.39 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=45.0
Q ss_pred eecCCCCcHHHHHHHHHHHhCCCCCCeEEE-ecCeeccCCccccccccCCCCEEEEEEEec
Q 012714 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (458)
Q Consensus 167 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~ 226 (458)
+.|+.+.....+-+.-++.+.+|+..-.++ .+|--.+...+-...-++.||.+.+..+-+
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdr 91 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 91 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccc
Confidence 456677777777777788889988765555 667777777888888889999998877654
No 336
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.50 E-value=2.1e+02 Score=21.71 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=29.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE
Q 012714 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (458)
Q Consensus 391 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~L 423 (458)
..+.|.|+++.+=.++|+.++..+++.+...+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 578999999999999999999999998876654
No 337
>PRK00529 elongation factor P; Validated
Probab=22.23 E-value=1.7e+02 Score=26.34 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=48.8
Q ss_pred CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeee--ccCCCCccccccccccccceeEeecCCeEEEEEecC
Q 012714 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85 (458)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~--L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~ 85 (458)
.+|+.+....+.++.++.. .+ -..+.|.|+.+|.. +=|..+-++|.+....--....-+.++|.+.|-..+
T Consensus 45 ~tG~~~e~~f~~~e~ve~~--~v-----e~~~~q~ly~dgd~~~fMD~etyeq~~l~~~~lg~~~~~L~eg~~v~v~~~~ 117 (186)
T PRK00529 45 LTGSVVEKTFKAGDKVERA--DV-----ERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYN 117 (186)
T ss_pred CCCCeEEEEeCCCCEEEec--cE-----EeEEEEEEEECCCEEEEecCCCceeeEcCHHHhHHHHhhccCCCEEEEEEEC
Confidence 5677777677777664332 11 12345788887743 334456777776654221112235678888888888
Q ss_pred CcEEEEEEeCC
Q 012714 86 GKTITLEVESS 96 (458)
Q Consensus 86 g~~~~l~v~~~ 96 (458)
|+.+.++++..
T Consensus 118 ~~~i~v~lP~~ 128 (186)
T PRK00529 118 GEPISVELPNF 128 (186)
T ss_pred CEEEEEECCCE
Confidence 88877776543
No 338
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=21.77 E-value=2.9e+02 Score=27.84 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=50.4
Q ss_pred eEEEeccCceEeeecCCCCcHHHHHHHHHHHh--CCCCCCeEEEec----Cee--ccCCccccccccCCCCEEEEEE
Q 012714 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 223 (458)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~--gip~~~q~L~~~----g~~--L~d~~tL~~y~i~~~s~i~l~~ 223 (458)
+.++...| ...+++.++++.+-|-.++-..+ +..+++..+.-+ |.. +..++|+.+.|+..|..++|.+
T Consensus 3 ~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 3 FRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred EEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 44554444 47799999999999988887655 345666666632 221 4578999999999999999987
No 339
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=21.00 E-value=1.4e+02 Score=22.31 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=42.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCcccc--CCCCCCEEEEEEEecC
Q 012714 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLRG 455 (458)
Q Consensus 391 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~--~i~~~~~i~~~~~~~~ 455 (458)
......|.++.. +++.|+.+.+..+-.+|+...+...+..+ ....|+.+.+.+.+.+
T Consensus 15 g~~V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 15 GVVVVSVIPGSP--------AAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp SEEEEEESTTSH--------HHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred eEEEEEeCCCCc--------HHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 445566777763 45678999999999999999776665554 5688999998887654
No 340
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=20.69 E-value=1.4e+02 Score=26.95 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=29.0
Q ss_pred cCCCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcc
Q 012714 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337 (458)
Q Consensus 289 I~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~ 337 (458)
--.|+|+|++.-.-....|.+ ...++|.++||++.+-++|+.-
T Consensus 138 ~~~GctvHfV~EevD~G~iI~------q~~v~V~~~Dt~esl~qrv~~a 180 (206)
T KOG3076|consen 138 KLSGCTVHFVIEEVDTGPIIA------QMAVPVIPGDTLESLEQRVHDA 180 (206)
T ss_pred ccccceEEEehhhccCCCceE------EEeeeecCCCCHHHHHHHHHHH
Confidence 346889998754322222222 2358899999999999998864
No 341
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=20.39 E-value=1.1e+02 Score=22.56 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccC-CCCCCEEEE
Q 012714 401 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHL 449 (458)
Q Consensus 401 ~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~-i~~~~~i~~ 449 (458)
.|+++|.+..++++|++ ..-.+.- |..-+.|.. |.+||.+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~------dgaeIdDI~~IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNE------DGAEIDDIDVIRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcC------CCCEEeEEEEEEcCCEEEE
Confidence 68999999999999996 3333333 344444443 577888765
No 342
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.35 E-value=81 Score=32.19 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=43.4
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCE
Q 012714 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 446 (458)
Q Consensus 395 ~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~ 446 (458)
++.+-+-+=.++...|++++|++.+..+.|-+||+|+-.+||.+-|++.+..
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~ 105 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQE 105 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhH
Confidence 3444455566899999999999999999999999999999999999876543
Done!