Query 012716
Match_columns 458
No_of_seqs 221 out of 1358
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 6E-123 1E-127 950.9 38.5 417 38-458 31-452 (524)
2 PLN02814 beta-glucosidase 100.0 3E-114 7E-119 910.8 41.0 422 6-458 2-426 (504)
3 PLN02849 beta-glucosidase 100.0 8E-114 2E-118 907.5 41.8 402 39-458 25-426 (503)
4 PLN02998 beta-glucosidase 100.0 3E-113 6E-118 902.1 41.0 402 39-458 26-431 (497)
5 COG2723 BglB Beta-glucosidase/ 100.0 5E-111 1E-115 857.8 37.3 390 42-458 2-397 (460)
6 PRK09593 arb 6-phospho-beta-gl 100.0 1E-108 2E-113 866.3 39.6 388 42-457 4-410 (478)
7 PRK13511 6-phospho-beta-galact 100.0 1E-108 3E-113 865.4 38.7 392 42-458 3-411 (469)
8 TIGR01233 lacG 6-phospho-beta- 100.0 3E-108 6E-113 861.5 40.1 388 43-458 3-409 (467)
9 PRK09589 celA 6-phospho-beta-g 100.0 6E-108 1E-112 860.3 39.8 387 43-457 3-409 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 4E-109 1E-113 869.4 30.7 392 42-458 3-397 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 4E-107 1E-111 853.1 40.5 389 40-457 2-410 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1E-106 3E-111 848.1 39.6 388 43-458 3-408 (474)
13 TIGR03356 BGL beta-galactosida 100.0 9E-105 2E-109 828.5 39.2 379 44-458 1-379 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.2 5.2E-11 1.1E-15 122.9 8.5 109 97-210 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.2 8.3E-11 1.8E-15 115.4 9.6 109 98-210 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 99.2 3.5E-09 7.6E-14 103.7 20.2 83 118-209 1-85 (254)
17 PF07745 Glyco_hydro_53: Glyco 98.7 1.1E-06 2.3E-11 89.0 19.8 207 100-426 27-242 (332)
18 COG1874 LacA Beta-galactosidas 98.2 2.9E-06 6.3E-11 92.5 7.7 118 98-220 31-175 (673)
19 PRK10150 beta-D-glucuronidase; 98.0 0.00055 1.2E-08 75.3 20.6 93 97-207 313-418 (604)
20 COG3867 Arabinogalactan endo-1 97.9 0.002 4.2E-08 63.3 19.2 139 40-208 31-182 (403)
21 COG2730 BglC Endoglucanase [Ca 97.9 4.8E-05 1E-09 79.6 8.7 110 100-209 76-193 (407)
22 PF01229 Glyco_hydro_39: Glyco 97.7 0.00011 2.4E-09 78.6 9.4 106 99-210 41-168 (486)
23 PF00331 Glyco_hydro_10: Glyco 97.4 0.0008 1.7E-08 68.2 9.3 124 44-209 6-136 (320)
24 PF01301 Glyco_hydro_35: Glyco 97.1 0.00052 1.1E-08 69.5 5.1 97 98-196 25-132 (319)
25 PLN03059 beta-galactosidase; P 96.9 0.0042 9E-08 69.5 10.1 95 97-194 59-165 (840)
26 PF01373 Glyco_hydro_14: Glyco 96.7 0.0016 3.4E-08 67.1 4.5 107 96-209 15-152 (402)
27 PF14587 Glyco_hydr_30_2: O-Gl 96.7 0.011 2.4E-07 60.7 10.5 101 107-209 57-185 (384)
28 PLN02803 beta-amylase 96.5 0.0089 1.9E-07 63.2 8.5 107 97-209 107-252 (548)
29 PLN00197 beta-amylase; Provisi 96.5 0.0098 2.1E-07 63.1 8.7 106 98-209 128-272 (573)
30 PLN02161 beta-amylase 96.4 0.013 2.9E-07 61.7 9.0 111 93-209 113-262 (531)
31 PLN02801 beta-amylase 96.4 0.018 3.9E-07 60.7 9.6 98 97-198 37-173 (517)
32 PF02836 Glyco_hydro_2_C: Glyc 96.2 0.026 5.6E-07 56.4 9.2 92 96-207 35-132 (298)
33 PLN02905 beta-amylase 96.0 0.034 7.4E-07 59.8 9.8 112 93-209 282-432 (702)
34 PF13204 DUF4038: Protein of u 96.0 0.062 1.3E-06 53.7 11.0 103 100-207 33-156 (289)
35 PLN02705 beta-amylase 95.9 0.029 6.3E-07 60.2 8.6 110 95-209 266-414 (681)
36 COG3693 XynA Beta-1,4-xylanase 95.6 0.035 7.5E-07 55.5 7.1 86 117-209 66-153 (345)
37 PF14488 DUF4434: Domain of un 94.1 0.36 7.8E-06 44.3 9.3 102 97-207 20-130 (166)
38 KOG0496 Beta-galactosidase [Ca 93.5 0.33 7.1E-06 52.9 8.8 94 98-194 50-155 (649)
39 PRK09525 lacZ beta-D-galactosi 92.8 0.45 9.8E-06 55.7 9.4 94 95-208 369-464 (1027)
40 PF11790 Glyco_hydro_cc: Glyco 92.0 0.36 7.8E-06 46.8 6.3 51 397-455 150-200 (239)
41 PRK10340 ebgA cryptic beta-D-g 91.3 0.87 1.9E-05 53.4 9.5 92 96-208 354-451 (1021)
42 COG3934 Endo-beta-mannanase [C 91.2 0.086 1.9E-06 55.2 1.1 108 99-209 28-150 (587)
43 COG3250 LacZ Beta-galactosidas 89.5 1.6 3.4E-05 49.7 9.3 90 93-208 317-408 (808)
44 COG3664 XynB Beta-xylosidase [ 88.3 0.95 2.1E-05 46.8 5.9 101 106-212 14-119 (428)
45 PF10566 Glyco_hydro_97: Glyco 87.8 2.8 6.1E-05 41.6 8.7 118 69-193 8-149 (273)
46 PF03198 Glyco_hydro_72: Gluca 82.9 4.2 9E-05 41.0 7.3 48 98-160 54-101 (314)
47 smart00642 Aamy Alpha-amylase 81.3 4.2 9E-05 37.2 6.2 64 95-158 17-90 (166)
48 PLN02361 alpha-amylase 77.8 5.7 0.00012 41.7 6.7 66 94-160 26-100 (401)
49 PF07488 Glyco_hydro_67M: Glyc 73.2 24 0.00052 35.5 9.2 87 96-196 56-150 (328)
50 PF12891 Glyco_hydro_44: Glyco 72.2 10 0.00022 36.8 6.3 111 138-275 24-180 (239)
51 PLN00196 alpha-amylase; Provis 70.2 8.4 0.00018 40.8 5.7 66 95-160 42-116 (428)
52 PF00128 Alpha-amylase: Alpha 69.5 9.3 0.0002 37.2 5.7 59 99-159 6-73 (316)
53 cd07948 DRE_TIM_HCS Saccharomy 68.2 25 0.00053 34.6 8.2 65 100-164 74-139 (262)
54 cd07945 DRE_TIM_CMS Leptospira 66.3 14 0.0003 36.8 6.1 83 99-192 76-158 (280)
55 PF02638 DUF187: Glycosyl hydr 64.8 22 0.00048 35.9 7.3 100 96-195 18-154 (311)
56 PRK05799 coproporphyrinogen II 64.4 15 0.00032 37.9 6.2 95 100-211 99-196 (374)
57 PLN02746 hydroxymethylglutaryl 63.8 18 0.0004 37.1 6.6 85 99-192 123-208 (347)
58 PLN02784 alpha-amylase 63.7 18 0.00038 41.5 6.8 66 94-160 518-592 (894)
59 cd03174 DRE_TIM_metallolyase D 63.3 18 0.00039 35.0 6.2 62 100-161 77-138 (265)
60 PRK12313 glycogen branching en 63.0 26 0.00057 38.9 8.2 93 96-195 169-302 (633)
61 cd07939 DRE_TIM_NifV Streptomy 61.9 9.3 0.0002 37.3 3.9 59 100-158 72-130 (259)
62 PF14871 GHL6: Hypothetical gl 61.4 32 0.0007 30.2 6.8 58 101-160 4-66 (132)
63 COG3589 Uncharacterized conser 61.4 31 0.00067 35.2 7.4 72 100-186 19-90 (360)
64 TIGR02402 trehalose_TreZ malto 61.2 33 0.00072 37.4 8.4 94 96-195 110-237 (542)
65 PRK05402 glycogen branching en 61.1 42 0.00091 38.1 9.4 93 96-195 264-397 (726)
66 KOG2233 Alpha-N-acetylglucosam 61.0 45 0.00098 35.6 8.7 112 96-207 77-248 (666)
67 PRK05692 hydroxymethylglutaryl 60.6 22 0.00047 35.5 6.3 85 99-192 81-166 (287)
68 cd06592 GH31_glucosidase_KIAA1 60.3 43 0.00093 33.6 8.4 106 99-208 32-167 (303)
69 cd06543 GH18_PF-ChiA-like PF-C 60.1 35 0.00076 34.2 7.7 79 104-196 19-105 (294)
70 PRK09441 cytoplasmic alpha-amy 59.1 17 0.00037 38.9 5.7 68 94-161 19-106 (479)
71 cd06593 GH31_xylosidase_YicI Y 57.9 64 0.0014 32.2 9.3 106 99-207 26-160 (308)
72 PF12876 Cellulase-like: Sugar 54.1 7.7 0.00017 31.3 1.5 19 190-208 1-22 (88)
73 TIGR02403 trehalose_treC alpha 53.8 18 0.0004 39.4 4.9 63 96-158 26-95 (543)
74 TIGR02090 LEU1_arch isopropylm 53.5 16 0.00036 37.6 4.2 61 99-159 73-133 (363)
75 PRK14040 oxaloacetate decarbox 53.3 40 0.00086 37.3 7.3 51 96-160 91-146 (593)
76 COG1523 PulA Type II secretory 53.0 26 0.00057 39.4 5.9 56 103-158 206-285 (697)
77 cd07938 DRE_TIM_HMGL 3-hydroxy 52.4 41 0.00088 33.3 6.7 84 100-192 76-160 (274)
78 PRK14706 glycogen branching en 52.3 44 0.00096 37.3 7.6 90 104-195 175-299 (639)
79 TIGR02660 nifV_homocitr homoci 51.8 36 0.00078 35.1 6.4 59 100-158 75-133 (365)
80 PRK10933 trehalose-6-phosphate 51.7 22 0.00047 39.0 5.0 61 96-158 32-101 (551)
81 PRK14041 oxaloacetate decarbox 50.4 47 0.001 35.6 7.1 55 96-164 89-148 (467)
82 TIGR01210 conserved hypothetic 50.2 1E+02 0.0022 31.1 9.2 109 100-222 117-229 (313)
83 TIGR01515 branching_enzym alph 50.0 93 0.002 34.6 9.7 100 96-195 155-288 (613)
84 PRK14705 glycogen branching en 49.2 74 0.0016 38.2 9.1 87 103-195 772-897 (1224)
85 PRK09505 malS alpha-amylase; R 49.0 31 0.00066 38.8 5.7 64 99-162 232-318 (683)
86 PRK11858 aksA trans-homoaconit 49.0 47 0.001 34.5 6.8 59 100-158 78-136 (378)
87 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.3 89 0.0019 30.8 8.4 68 99-192 93-160 (275)
88 PF03659 Glyco_hydro_71: Glyco 48.1 72 0.0016 33.3 8.0 50 98-158 18-67 (386)
89 TIGR02100 glgX_debranch glycog 47.5 27 0.00057 39.4 5.0 56 103-158 190-265 (688)
90 cd06602 GH31_MGAM_SI_GAA This 47.0 79 0.0017 32.3 8.0 68 141-209 69-168 (339)
91 PLN02447 1,4-alpha-glucan-bran 46.8 36 0.00079 38.6 5.8 101 95-195 248-383 (758)
92 TIGR02456 treS_nterm trehalose 46.2 27 0.00058 38.0 4.7 58 97-158 28-96 (539)
93 TIGR03217 4OH_2_O_val_ald 4-hy 45.9 1E+02 0.0022 31.4 8.6 54 100-167 90-145 (333)
94 cd06598 GH31_transferase_CtsZ 45.9 1.4E+02 0.0029 30.2 9.4 109 100-210 27-168 (317)
95 COG0821 gcpE 1-hydroxy-2-methy 45.5 1.5E+02 0.0033 30.3 9.3 85 91-190 78-162 (361)
96 cd06601 GH31_lyase_GLase GLase 45.1 86 0.0019 32.0 7.9 71 141-213 67-140 (332)
97 TIGR00433 bioB biotin syntheta 44.2 55 0.0012 32.2 6.2 54 100-157 123-177 (296)
98 PRK12399 tagatose 1,6-diphosph 44.1 1.1E+02 0.0024 31.1 8.2 58 103-164 111-168 (324)
99 COG1501 Alpha-glucosidases, fa 43.7 74 0.0016 36.4 7.7 101 109-213 294-422 (772)
100 PRK14511 maltooligosyl trehalo 43.7 42 0.00092 38.7 5.8 59 96-161 19-94 (879)
101 PRK12581 oxaloacetate decarbox 43.4 38 0.00083 36.3 5.1 55 96-164 99-158 (468)
102 PRK04161 tagatose 1,6-diphosph 43.4 1.1E+02 0.0025 31.1 8.2 59 102-164 112-170 (329)
103 PRK12858 tagatose 1,6-diphosph 42.3 95 0.0021 31.9 7.6 52 103-158 112-163 (340)
104 TIGR00539 hemN_rel putative ox 41.7 58 0.0013 33.4 6.1 60 100-164 100-162 (360)
105 PF04646 DUF604: Protein of un 41.7 14 0.00031 36.0 1.5 72 147-221 77-148 (255)
106 PRK12331 oxaloacetate decarbox 41.6 91 0.002 33.2 7.6 52 99-164 98-149 (448)
107 PRK03705 glycogen debranching 41.6 54 0.0012 36.8 6.2 54 103-158 185-262 (658)
108 TIGR03234 OH-pyruv-isom hydrox 41.5 75 0.0016 30.5 6.6 68 94-164 81-150 (254)
109 PRK10785 maltodextrin glucosid 41.4 43 0.00094 37.0 5.4 57 98-158 180-246 (598)
110 PRK12568 glycogen branching en 41.2 37 0.0008 38.4 4.8 95 96-195 268-401 (730)
111 KOG1065 Maltase glucoamylase a 41.2 99 0.0021 35.2 8.0 106 100-212 314-454 (805)
112 cd06599 GH31_glycosidase_Aec37 40.9 1.9E+02 0.0042 29.0 9.7 69 140-209 75-171 (317)
113 cd06600 GH31_MGAM-like This fa 40.9 1.5E+02 0.0033 29.8 8.9 70 140-210 66-164 (317)
114 TIGR01589 A_thal_3526 uncharac 40.6 39 0.00085 25.3 3.3 36 141-187 19-55 (57)
115 TIGR03581 EF_0839 conserved hy 40.4 96 0.0021 29.8 6.7 76 95-183 133-230 (236)
116 PF09713 A_thal_3526: Plant pr 39.8 30 0.00066 25.6 2.6 36 141-187 16-52 (54)
117 PRK09058 coproporphyrinogen II 39.6 1E+02 0.0022 32.8 7.7 106 100-221 163-270 (449)
118 cd02874 GH18_CFLE_spore_hydrol 37.9 1E+02 0.0022 30.8 7.1 83 103-195 16-103 (313)
119 cd07943 DRE_TIM_HOA 4-hydroxy- 37.6 1.8E+02 0.004 28.2 8.7 46 100-159 88-133 (263)
120 cd06603 GH31_GANC_GANAB_alpha 37.6 1.6E+02 0.0035 29.9 8.6 71 141-211 67-167 (339)
121 TIGR02401 trehalose_TreY malto 37.4 59 0.0013 37.3 5.7 66 96-161 15-90 (825)
122 PRK13398 3-deoxy-7-phosphohept 37.2 1.3E+02 0.0028 29.7 7.5 72 92-167 36-107 (266)
123 COG3623 SgaU Putative L-xylulo 37.2 76 0.0016 30.9 5.5 22 98-119 19-40 (287)
124 PF02065 Melibiase: Melibiase; 36.7 1.5E+02 0.0033 31.0 8.3 96 98-199 59-188 (394)
125 PRK14510 putative bifunctional 36.7 39 0.00084 40.7 4.3 63 96-158 184-267 (1221)
126 cd07947 DRE_TIM_Re_CS Clostrid 36.3 99 0.0022 30.7 6.6 60 99-158 76-135 (279)
127 cd06542 GH18_EndoS-like Endo-b 36.1 1.1E+02 0.0024 29.5 6.8 56 136-195 49-104 (255)
128 cd07944 DRE_TIM_HOA_like 4-hyd 35.2 76 0.0016 31.2 5.5 65 100-192 85-149 (266)
129 cd06565 GH20_GcnA-like Glycosy 35.2 1.3E+02 0.0028 30.2 7.2 62 99-167 19-86 (301)
130 cd07941 DRE_TIM_LeuA3 Desulfob 34.0 58 0.0013 32.1 4.5 61 101-161 82-142 (273)
131 PRK12677 xylose isomerase; Pro 33.8 3.1E+02 0.0068 28.5 10.0 90 99-196 33-128 (384)
132 PLN02960 alpha-amylase 33.0 77 0.0017 36.6 5.7 94 95-195 414-549 (897)
133 PLN03153 hypothetical protein; 32.9 47 0.001 35.9 3.7 68 147-223 327-401 (537)
134 PF01261 AP_endonuc_2: Xylose 32.9 43 0.00094 30.4 3.2 62 95-156 69-130 (213)
135 cd06545 GH18_3CO4_chitinase Th 32.7 95 0.0021 30.0 5.7 74 116-195 26-99 (253)
136 smart00729 Elp3 Elongator prot 32.1 2.2E+02 0.0047 25.4 7.8 58 98-158 98-157 (216)
137 cd02742 GH20_hexosaminidase Be 31.8 1E+02 0.0022 30.9 5.9 63 99-167 18-98 (303)
138 PF03511 Fanconi_A: Fanconi an 31.7 37 0.00081 25.8 2.0 39 121-162 19-57 (64)
139 TIGR01108 oadA oxaloacetate de 31.3 1.6E+02 0.0034 32.6 7.7 93 99-209 93-205 (582)
140 TIGR03471 HpnJ hopanoid biosyn 31.3 1.5E+02 0.0032 31.6 7.4 76 100-189 287-364 (472)
141 PRK09856 fructoselysine 3-epim 29.8 80 0.0017 30.6 4.7 61 94-156 87-147 (275)
142 cd06604 GH31_glucosidase_II_Ma 29.7 2.7E+02 0.0058 28.2 8.7 68 141-210 67-163 (339)
143 TIGR02635 RhaI_grampos L-rhamn 29.3 2.4E+02 0.0051 29.4 8.2 82 100-197 43-131 (378)
144 PF04914 DltD_C: DltD C-termin 28.8 1.6E+02 0.0035 25.8 5.9 54 138-198 36-92 (130)
145 cd07940 DRE_TIM_IPMS 2-isoprop 28.5 1.5E+02 0.0033 29.0 6.4 59 100-158 72-134 (268)
146 COG0366 AmyA Glycosidases [Car 28.2 64 0.0014 34.1 3.9 59 101-160 33-101 (505)
147 PLN02389 biotin synthase 28.1 1.5E+02 0.0033 30.8 6.6 57 98-158 176-233 (379)
148 TIGR01232 lacD tagatose 1,6-di 28.1 2.8E+02 0.0062 28.2 8.2 59 102-164 111-169 (325)
149 TIGR01212 radical SAM protein, 28.0 1.6E+02 0.0034 29.5 6.5 73 137-222 162-234 (302)
150 PF01055 Glyco_hydro_31: Glyco 28.0 1.9E+02 0.0041 30.3 7.4 109 98-210 44-184 (441)
151 cd02803 OYE_like_FMN_family Ol 27.9 5.5E+02 0.012 25.5 10.5 39 122-161 62-100 (327)
152 TIGR02631 xylA_Arthro xylose i 27.6 3.6E+02 0.0079 28.0 9.3 92 98-197 33-130 (382)
153 PRK08599 coproporphyrinogen II 27.0 2.5E+02 0.0054 28.8 8.0 96 99-211 99-197 (377)
154 cd06591 GH31_xylosidase_XylS X 26.5 3.7E+02 0.008 27.0 8.9 72 139-211 67-164 (319)
155 KOG0470 1,4-alpha-glucan branc 26.4 79 0.0017 35.5 4.2 65 96-160 253-333 (757)
156 cd06525 GH25_Lyc-like Lyc mura 26.3 4.7E+02 0.01 23.8 9.0 50 102-164 13-62 (184)
157 TIGR02104 pulA_typeI pullulana 25.9 1.3E+02 0.0028 33.3 6.0 22 137-158 228-249 (605)
158 PRK07379 coproporphyrinogen II 25.8 2.5E+02 0.0055 29.2 7.8 103 100-219 115-220 (400)
159 TIGR02629 L_rham_iso_rhiz L-rh 25.8 8E+02 0.017 25.9 11.2 84 99-197 72-165 (412)
160 PRK13209 L-xylulose 5-phosphat 25.6 5.9E+02 0.013 24.5 10.1 54 98-156 22-75 (283)
161 cd06570 GH20_chitobiase-like_1 25.6 2.2E+02 0.0048 28.7 7.1 62 99-166 20-93 (311)
162 PRK08195 4-hyroxy-2-oxovalerat 25.4 79 0.0017 32.3 3.8 68 100-196 91-158 (337)
163 PRK11572 copper homeostasis pr 24.9 1.8E+02 0.0039 28.5 6.0 43 95-147 71-113 (248)
164 cd06595 GH31_xylosidase_XylS-l 24.7 2.1E+02 0.0045 28.4 6.7 110 100-210 28-163 (292)
165 PRK05628 coproporphyrinogen II 24.7 3.6E+02 0.0077 27.7 8.6 94 100-211 108-205 (375)
166 PRK01060 endonuclease IV; Prov 24.7 3.5E+02 0.0075 26.2 8.2 51 99-155 14-64 (281)
167 TIGR00542 hxl6Piso_put hexulos 24.6 1.3E+02 0.0029 29.2 5.2 62 95-158 92-153 (279)
168 PF05089 NAGLU: Alpha-N-acetyl 24.4 1.7E+02 0.0036 30.0 5.8 110 96-207 18-184 (333)
169 TIGR01531 glyc_debranch glycog 24.4 3.1E+02 0.0067 33.6 8.7 71 94-169 129-219 (1464)
170 TIGR00419 tim triosephosphate 24.3 1.7E+02 0.0036 27.8 5.5 43 104-158 75-117 (205)
171 smart00812 Alpha_L_fucos Alpha 24.3 2.3E+02 0.0049 29.6 7.0 53 103-156 87-146 (384)
172 TIGR02159 PA_CoA_Oxy4 phenylac 23.7 1.3E+02 0.0028 27.0 4.4 55 91-155 36-91 (146)
173 PRK06294 coproporphyrinogen II 23.7 2E+02 0.0043 29.7 6.5 95 100-211 103-200 (370)
174 PRK07094 biotin synthase; Prov 23.7 96 0.0021 31.1 4.1 57 98-158 127-185 (323)
175 PTZ00445 p36-lilke protein; Pr 23.5 1.3E+02 0.0029 28.8 4.6 56 103-159 35-99 (219)
176 PRK08446 coproporphyrinogen II 23.1 3.4E+02 0.0074 27.6 8.1 92 100-208 98-192 (350)
177 cd06568 GH20_SpHex_like A subg 23.1 2.2E+02 0.0049 28.9 6.6 72 90-167 9-101 (329)
178 PRK14507 putative bifunctional 23.1 1.3E+02 0.0029 37.4 5.6 67 96-162 757-833 (1693)
179 TIGR00612 ispG_gcpE 1-hydroxy- 23.0 2.4E+02 0.0052 28.9 6.6 87 89-190 74-160 (346)
180 PF13812 PPR_3: Pentatricopept 22.8 65 0.0014 19.9 1.8 15 140-154 20-34 (34)
181 PF00331 Glyco_hydro_10: Glyco 22.8 1E+02 0.0023 31.1 4.1 53 397-455 219-271 (320)
182 PF06777 DUF1227: Protein of u 22.6 1.6E+02 0.0035 26.4 4.8 68 138-206 16-85 (146)
183 PRK10426 alpha-glucosidase; Pr 22.0 6.3E+02 0.014 28.2 10.4 106 99-207 223-364 (635)
184 PTZ00445 p36-lilke protein; Pr 21.8 1.2E+02 0.0026 29.0 4.0 49 139-191 30-88 (219)
185 COG5309 Exo-beta-1,3-glucanase 21.7 2.4E+02 0.0053 28.0 6.1 55 88-159 54-108 (305)
186 PRK00366 ispG 4-hydroxy-3-meth 21.4 2.7E+02 0.0058 28.8 6.6 53 138-190 117-169 (360)
187 PF04055 Radical_SAM: Radical 21.3 1.3E+02 0.0029 25.6 4.1 54 100-156 90-145 (166)
188 PRK09282 pyruvate carboxylase 20.9 3.1E+02 0.0067 30.4 7.6 48 99-160 98-145 (592)
189 TIGR00538 hemN oxygen-independ 20.9 1.5E+02 0.0033 31.4 5.1 59 100-164 151-213 (455)
190 cd00019 AP2Ec AP endonuclease 20.8 4.4E+02 0.0096 25.5 8.1 54 97-156 10-64 (279)
191 PRK09389 (R)-citramalate synth 20.7 1.3E+02 0.0028 32.5 4.5 62 99-160 75-136 (488)
192 TIGR00676 fadh2 5,10-methylene 20.3 3E+02 0.0065 27.0 6.7 77 131-210 166-264 (272)
193 cd00927 Cyt_c_Oxidase_VIc Cyto 20.2 57 0.0012 25.5 1.2 19 93-111 46-66 (70)
194 TIGR00587 nfo apurinic endonuc 20.1 3E+02 0.0065 26.9 6.7 56 99-160 13-68 (274)
195 PLN02925 4-hydroxy-3-methylbut 20.0 2.8E+02 0.0061 31.3 6.9 52 139-191 211-262 (733)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-123 Score=950.93 Aligned_cols=417 Identities=51% Similarity=0.921 Sum_probs=385.5
Q ss_pred ccccCCCCCCCeeccccccccccCCcCCCCCcCccccccccC-CCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEe
Q 012716 38 DVKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHI-PGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRF 116 (458)
Q Consensus 38 ~~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~-~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~ 116 (458)
.+.+..||++|+||+||||||+|||+++||||+|+||.|+|. |+++.+++++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 567889999999999999999999999999999999999985 5577888899999999999999999999999999999
Q ss_pred ccCCCccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhC
Q 012716 117 SISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 117 si~W~ri~p~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~g 195 (458)
||+||||+|.|. .+.+|++||+||+++|++|+++||+|+|||+|||+||+|+++||||+|++++++|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999996 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEe
Q 012716 196 DRVKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVL 275 (458)
Q Consensus 196 d~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~ 275 (458)
|+||+|+|||||++++..||..|..|||+|+....+|..|++++++|.|.||||+|||+||++||+.++..|+|+|||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999998888999999999999999999999999999999999888999999999
Q ss_pred cCceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhccCCCCCHhhHhhhcCCCceEeeccccceeeee
Q 012716 276 HSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKD 355 (458)
Q Consensus 276 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~lp~ft~~d~~~ikg~~DFiGiNyYts~~v~~ 355 (458)
+..|++|.+.+++|++||+|+.+|..+||++|++.|+||+.|++.+++|||.||++|+++|||+.||+||||||+.+++.
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999988999999999999999999999889999999999999999999999999999999999999999999988
Q ss_pred cCCccc--ccCCCcccccceeecccCCC-cccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCC
Q 012716 356 CIHSVC--VLGSNHAIRGFVYTTGERDG-IMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQR 432 (458)
Q Consensus 356 ~~~~~~--~~~~~~~~d~~~~~~~~~~g-~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~ 432 (458)
.+.+++ .++ +..|.++.. . .++ .+.++.+...|..++|+|||++|++++++|++|||||||||+++.+....+
T Consensus 351 ~~~~~~~~~~~--~~~d~~~~~-~-~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~ 426 (524)
T KOG0626|consen 351 LKPPPDPSQPG--WSTDSGVDW-T-LEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKS 426 (524)
T ss_pred cCCCCCCCCcc--cccccceee-e-ecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccc
Confidence 654322 122 444555544 1 222 355666778899999999999999999999999999999999998654445
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHhhC
Q 012716 433 SQDLVDDVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 433 ~~g~i~D~~Ri~yl~~hL~~l~~AI~ 458 (458)
....++|..||+|++.||++|++||+
T Consensus 427 ~~~~l~D~~Ri~Y~~~~L~~~~kAi~ 452 (524)
T KOG0626|consen 427 LEVALKDTKRIEYLQNHLQAVLKAIK 452 (524)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999999983
No 2
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3.1e-114 Score=910.83 Aligned_cols=422 Identities=43% Similarity=0.755 Sum_probs=364.4
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcccCCCCcccccccCCCCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccC
Q 012716 6 HHFSAFLFFLVLLQLWPVLSLAKSTCNENEQVDVKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIEN 85 (458)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~ 85 (458)
.||+++.+++++..+.+..+ .+++.+||++|+||+|||||||||++++||||+|+||.+++. .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~ 65 (504)
T PLN02814 2 KHFSLLSIFLVIVLATSYID------------AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YN 65 (504)
T ss_pred CceEeehhHHHHHhhhhhhc------------ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cC
Confidence 58887766565553333331 134568999999999999999999999999999999999873 23
Q ss_pred CCCCCcCcchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCch
Q 012716 86 NDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ 165 (458)
Q Consensus 86 ~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 165 (458)
+.++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++||+|+++||+|||||+|||+|+
T Consensus 66 ~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G-~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 66 GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNG-RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCC-CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 568999999999999999999999999999999999999998 6899999999999999999999999999999999999
Q ss_pred hHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccccccccccccCCCCCCCCC-CCCCCCCCCChHHHH
Q 012716 166 QLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYPPTHCSAPF-GNCSAGNSDTEPLIV 244 (458)
Q Consensus 166 ~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~-~~~~~~~~~~~~~~~ 244 (458)
||+++||||+|++++++|++||+.|+++|||+||+|+|||||++++..||..|.. ||.++... ..|..++..++.+++
T Consensus 145 ~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a 223 (504)
T PLN02814 145 SLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIA 223 (504)
T ss_pred HHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999885 88654211 145445555678999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhcc
Q 012716 245 LHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ 324 (458)
Q Consensus 245 ~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~ 324 (458)
+||+++|||+||++||+.++..++++||++++..+++|.+++|+|++||++++++.++||+||+++|+||+.|++.++++
T Consensus 224 ~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~ 303 (504)
T PLN02814 224 GHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSR 303 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcC
Confidence 99999999999999999876678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhhHhhhcCCCceEeeccccceeeeecCCcccccC--CCcccccceeecccCCCcccCCCCCCCCcccChHhHHH
Q 012716 325 LPRFSKEETKYVKGSLDFIGINHYSTLYAKDCIHSVCVLG--SNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEK 402 (458)
Q Consensus 325 lp~ft~~d~~~ikg~~DFiGiNyYts~~v~~~~~~~~~~~--~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~ 402 (458)
+|.|+++|+++|++++||||||||+|.+|+..+.+...+. ..+..+... ...+..+.+++||+ |+|+||+.
T Consensus 304 lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gWe-i~P~Gl~~ 376 (504)
T PLN02814 304 LPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGA------YIISAGNSSFFEFD-ATPWGLEG 376 (504)
T ss_pred CCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCccccccc------ccCCCCCcCCCCCe-ECcHHHHH
Confidence 9999999999999999999999999999975321100000 001000000 00123357889996 99999999
Q ss_pred HHHHHHHHcCCCcEEEeecCCCCCCCCCCCCCCCcCChhhHHHHHHHHHHHHHhhC
Q 012716 403 IVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQDLVDDVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 403 ~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~AI~ 458 (458)
+|+++++||++|||||||||++..+ +|+|+|++||+||++||++|++||+
T Consensus 377 ~L~~~~~rY~~ppI~ITENG~~~~~------~g~i~D~~Ri~Yl~~hl~~l~~Ai~ 426 (504)
T PLN02814 377 ILEHIKQSYNNPPIYILENGMPMKH------DSTLQDTPRVEFIQAYIGAVLNAIK 426 (504)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCC------CCcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988999999999763 4789999999999999999999984
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=8.2e-114 Score=907.48 Aligned_cols=402 Identities=45% Similarity=0.844 Sum_probs=355.8
Q ss_pred cccCCCCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEecc
Q 012716 39 VKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSI 118 (458)
Q Consensus 39 ~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si 118 (458)
+++.+||++|+||+|||||||||++++||||+|+||.|++.+ ++.++++||||||||+|||+|||+||+++|||||
T Consensus 25 ~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSI 100 (503)
T PLN02849 25 YSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSI 100 (503)
T ss_pred CccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEec
Confidence 566789999999999999999999999999999999998754 3468899999999999999999999999999999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCc
Q 012716 119 SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRV 198 (458)
Q Consensus 119 ~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v 198 (458)
+||||+|+| .|.+|++||+||+++||+|+++||+|||||+|||+|+||+++||||+|++++++|++||+.|+++|||+|
T Consensus 101 sWsRI~P~G-~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrV 179 (503)
T PLN02849 101 SWSRLIPNG-RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHV 179 (503)
T ss_pred cHHhcCcCC-CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 999999998 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecCc
Q 012716 199 KYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSM 278 (458)
Q Consensus 199 ~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~ 278 (458)
|+|+|||||++++..||..|.+|||.+......|..+++.++.++++||+++|||+||+++|+.++..++++||++++..
T Consensus 180 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~ 259 (503)
T PLN02849 180 KFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFAL 259 (503)
T ss_pred CEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECc
Confidence 99999999999999999999999997542112355445556789999999999999999999975445789999999999
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhccCCCCCHhhHhhhcCCCceEeeccccceeeeecCC
Q 012716 279 MYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKDCIH 358 (458)
Q Consensus 279 ~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~lp~ft~~d~~~ikg~~DFiGiNyYts~~v~~~~~ 358 (458)
+++|.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||+|.+|+....
T Consensus 260 ~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~ 339 (503)
T PLN02849 260 GFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKI 339 (503)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999975321
Q ss_pred cccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCCCCcC
Q 012716 359 SVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQDLVD 438 (458)
Q Consensus 359 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~ 438 (458)
.+.... ...+. . ..+.+....+++||+ |+|+||+.+|+++++||++|||||||||++..|+ .+++++
T Consensus 340 ~~~~~~-----~~~~~--~-~~~~~~~~~~~~gw~-i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~----~~~~v~ 406 (503)
T PLN02849 340 KPSLSG-----NPDFY--S-DMGVSLGKFSAFEYA-VAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD----LQLQQK 406 (503)
T ss_pred CCCCCC-----CCccc--c-ccCCCCCccCCCCCe-EChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC----CCCccc
Confidence 100000 00000 0 011122345689996 9999999999999999999889999999998764 457899
Q ss_pred ChhhHHHHHHHHHHHHHhhC
Q 012716 439 DVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 439 D~~Ri~yl~~hL~~l~~AI~ 458 (458)
|++||+||++||++|++||+
T Consensus 407 D~~Ri~Yl~~hL~~l~~Ai~ 426 (503)
T PLN02849 407 DTPRIEYLHAYIGAVLKAVR 426 (503)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=2.9e-113 Score=902.08 Aligned_cols=402 Identities=45% Similarity=0.847 Sum_probs=353.3
Q ss_pred cccCCCCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEecc
Q 012716 39 VKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSI 118 (458)
Q Consensus 39 ~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si 118 (458)
+.+.+||++|+||+|||||||||++++||||+|+||.|++ ++ ..+..++++||||||||+|||+|||+||+++|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~-~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AG-HSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cC-cCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 5667899999999999999999999999999999999998 44 222258899999999999999999999999999999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCc
Q 012716 119 SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRV 198 (458)
Q Consensus 119 ~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v 198 (458)
+||||+|+| .|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++|+++|||+|
T Consensus 104 sWsRI~P~G-~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 104 SWSRLLPSG-RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred cHHhcCcCC-CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 999999998 5889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCcccccccccccccCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecC
Q 012716 199 KYWATLNEPNLLTDMAYIRGTYPPTHCSAPF-GNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHS 277 (458)
Q Consensus 199 ~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~-~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~ 277 (458)
++|+|||||++++..||..|.+|||.+.... ..|..+++.++.++++||+++|||+||++||+.++..++++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 9999999999999999999999999754211 136655556778999999999999999999997655688999999999
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhccCCCCCHhhHhhhcCCCceEeeccccceeeeecC
Q 012716 278 MMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKDCI 357 (458)
Q Consensus 278 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~lp~ft~~d~~~ikg~~DFiGiNyYts~~v~~~~ 357 (458)
.+++|.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||+|||||+|.+|+...
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~ 342 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNS 342 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred Ccccc--cCCCcccccceeecccCCCcccCCCC-CCCCcccChHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCC
Q 012716 358 HSVCV--LGSNHAIRGFVYTTGERDGIMIGEPT-GNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQ 434 (458)
Q Consensus 358 ~~~~~--~~~~~~~d~~~~~~~~~~g~~~~~~t-~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~ 434 (458)
.+... .. +..+..... .+.++.+ .++|+ |+|+||+.+|+++++||++|||||||||+++.+ +
T Consensus 343 ~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~w~-i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~------~ 407 (497)
T PLN02998 343 SSLKPNLQD--FNTDIAVEM------TLVGNTSIENEYA-NTPWSLQQILLYVKETYGNPPVYILENGQMTPH------S 407 (497)
T ss_pred CcCCCCccc--ccccccccc------ccCCCcCCCCCCE-EChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC------C
Confidence 21000 00 101100000 0111233 47885 999999999999999999988999999999753 4
Q ss_pred CCcCChhhHHHHHHHHHHHHHhhC
Q 012716 435 DLVDDVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 435 g~i~D~~Ri~yl~~hL~~l~~AI~ 458 (458)
|+|+|++||+||++||++|++||+
T Consensus 408 g~v~D~~Ri~Yl~~hl~~~~kAi~ 431 (497)
T PLN02998 408 SSLVDTTRVKYLSSYIKAVLHSLR 431 (497)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999984
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-111 Score=857.83 Aligned_cols=390 Identities=39% Similarity=0.673 Sum_probs=348.7
Q ss_pred CCCCCCCeeccccccccccCCcCCCCCcCcccccccc--CCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEeccC
Q 012716 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSH--IPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSIS 119 (458)
Q Consensus 42 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~--~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~ 119 (458)
.+||++|+||+||||+|+|||+++||||+|+||.|++ .++++..+.++++||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 46777778899999999999999999999999999999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcc
Q 012716 120 WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVK 199 (458)
Q Consensus 120 W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~ 199 (458)
||||+|+|..+.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999444899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecCce
Q 012716 200 YWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMM 279 (458)
Q Consensus 200 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~ 279 (458)
+|+||||||+++..||..|.+||+..+ .+..+||+||+++|||+||+++|+.. ++.+|||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 999999999999999999999999765 37889999999999999999999863 4449999999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhcc--CCCCCHhhHhhhc-CCCceEeecccc-ceeeee
Q 012716 280 YEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYVK-GSLDFIGINHYS-TLYAKD 355 (458)
Q Consensus 280 ~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~--lp~ft~~d~~~ik-g~~DFiGiNyYt-s~~v~~ 355 (458)
.||.+++|+|+.||+.++.+.+.+|+||.++|.||..+.+.+.+. +|.++++|+++|| +++||||+|||+ +.+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999764 7999999999997 679999999999 455544
Q ss_pred cCCcccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCCC
Q 012716 356 CIHSVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQD 435 (458)
Q Consensus 356 ~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g 435 (458)
.+.... . +..+. + ....-+|..+.++|||+ |||+|||.+|+++++||+ +||||||||++..|+. ..++
T Consensus 308 ~~~~~~--~--~~~~~-~---~~~~~~p~~~~sdwGWe-I~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~--~~~~ 375 (460)
T COG2723 308 EPRYVS--G--YGPGG-F---FTSVPNPGLEVSDWGWE-IYPKGLYDILEKLYERYG-IPLFITENGLGVKDEV--DFDG 375 (460)
T ss_pred cCCcCC--c--ccccc-c---ccccCCCCCcccCCCce-eChHHHHHHHHHHHHHhC-CCeEEecCCCCccccc--ccCC
Confidence 332100 0 11110 1 00111355678899997 999999999999999999 5699999999998873 2333
Q ss_pred CcCChhhHHHHHHHHHHHHHhhC
Q 012716 436 LVDDVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 436 ~i~D~~Ri~yl~~hL~~l~~AI~ 458 (458)
|+|++||+||++||++|++||+
T Consensus 376 -i~DdyRI~Yl~~Hl~~v~~AI~ 397 (460)
T COG2723 376 -INDDYRIDYLKEHLKAVKKAIE 397 (460)
T ss_pred -cCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999994
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.1e-108 Score=866.31 Aligned_cols=388 Identities=28% Similarity=0.453 Sum_probs=338.7
Q ss_pred CCCCCCCeeccccccccccCCcCCCCCcCccccccccCCCccc--C----------C--CCCCcCcchhhchHHHHHHHH
Q 012716 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIE--N----------N--DNGDVADDHYHRFLEDIGIMH 107 (458)
Q Consensus 42 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~--~----------~--~~~~~a~d~y~ry~eDi~l~k 107 (458)
.+||++|+||+||||||||||+++||||+|+||+|++.++++. . + .++++||||||||+|||+|||
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 4799999999999999999999999999999999988655441 1 1 268899999999999999999
Q ss_pred hcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHH
Q 012716 108 SLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLA 187 (458)
Q Consensus 108 ~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya 187 (458)
+||+++|||||+||||+|+|..|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA 163 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLC 163 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHH
Confidence 99999999999999999998546799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccEEEeccCCccccccccc-ccc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012716 188 KTCFENFGDRVKYWATLNEPNLLTDMAYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQE 265 (458)
Q Consensus 188 ~~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~ 265 (458)
+.||++|||+|++|+|||||++++..||. .|. +|||... .++.++++||+++|||+||++||+.
T Consensus 164 ~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~--- 229 (478)
T PRK09593 164 RTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEV--- 229 (478)
T ss_pred HHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999888876 454 3676421 2568999999999999999999985
Q ss_pred CCCCeEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhc--cCCCCCHhhHhhhc-CCCce
Q 012716 266 KQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGS--QLPRFSKEETKYVK-GSLDF 342 (458)
Q Consensus 266 ~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~--~lp~ft~~d~~~ik-g~~DF 342 (458)
.|+++||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.+++ .+|.||++|+++|+ +++||
T Consensus 230 ~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 230 DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 47899999999999999999999999999987 4578999999999999999999975 46889999999996 99999
Q ss_pred EeeccccceeeeecCCcccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecC
Q 012716 343 IGINHYSTLYAKDCIHSVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENG 422 (458)
Q Consensus 343 iGiNyYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG 422 (458)
||||||||.+|+..+.... . . ...... ... .|..+.+++||+ |+|+||+.+|+++++||++| |||||||
T Consensus 309 lGiNyYt~~~v~~~~~~~~--~--~-~~~~~~--~~~--~p~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~P-i~ItENG 377 (478)
T PRK09593 309 ISFSYYSSRVASGDPKVNE--K--T-AGNIFA--SLK--NPYLKASEWGWQ-IDPLGLRITLNTIWDRYQKP-MFIVENG 377 (478)
T ss_pred EEEecccCcccccCCCCCC--C--C-CCCccc--ccc--CCCcccCCCCCE-ECHHHHHHHHHHHHHHcCCC-EEEEcCC
Confidence 9999999999975321100 0 0 000000 001 144567889996 99999999999999999985 9999999
Q ss_pred CCCCCCCCCCCCCCcCChhhHHHHHHHHHHHHHhh
Q 012716 423 YSPPKQKNQRSQDLVDDVKRIEYHSGYLSALARAI 457 (458)
Q Consensus 423 ~~~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~AI 457 (458)
++..++ .+.+|+|+|++||+||++||++|++||
T Consensus 378 ~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai 410 (478)
T PRK09593 378 LGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAI 410 (478)
T ss_pred CCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 998765 346789999999999999999999998
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.5e-108 Score=865.41 Aligned_cols=392 Identities=32% Similarity=0.530 Sum_probs=339.8
Q ss_pred CCCCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEeccCCC
Q 012716 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWP 121 (458)
Q Consensus 42 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ 121 (458)
.+||++|+||+|||||||||++++||||+|+||+|++.+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW----FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC----CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 36999999999999999999999999999999999986654 37899999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEE
Q 012716 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYW 201 (458)
Q Consensus 122 ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w 201 (458)
||+|+| +|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.||++||| ||+|
T Consensus 79 RI~P~G-~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W 155 (469)
T PRK13511 79 RIFPDG-YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYW 155 (469)
T ss_pred hcCcCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 999998 589999999999999999999999999999999999999987 9999999999999999999999999 9999
Q ss_pred EeccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecCceee
Q 012716 202 ATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYE 281 (458)
Q Consensus 202 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~ 281 (458)
+|||||++++..||..|.+|||++.. .+..++++||+++|||+||++||+. .++++||++++..+++
T Consensus 156 ~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~---~~~g~IGi~~~~~~~~ 222 (469)
T PRK13511 156 TTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDK---GYKGEIGVVHALPTKY 222 (469)
T ss_pred EEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceEe
Confidence 99999999999999999999996431 1468999999999999999999985 4789999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhc------cCCCCCHhhHhhhc---CCCceEeeccccce
Q 012716 282 PLR-DEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGS------QLPRFSKEETKYVK---GSLDFIGINHYSTL 351 (458)
Q Consensus 282 P~~-~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~------~lp~ft~~d~~~ik---g~~DFiGiNyYts~ 351 (458)
|.+ ++++|++||++++++.++||+||+++|+||+.|++.++. ..|.||++|+++|+ +++||||||||+|.
T Consensus 223 P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~ 302 (469)
T PRK13511 223 PIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSD 302 (469)
T ss_pred eCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcc
Confidence 998 899999999999999999999999999999999998742 12479999999996 46899999999999
Q ss_pred eeeecCCcc-cccCCCccccccee---ec--ccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCC-CcEEEeecCCC
Q 012716 352 YAKDCIHSV-CVLGSNHAIRGFVY---TT--GERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKN-IPMYVTENGYS 424 (458)
Q Consensus 352 ~v~~~~~~~-~~~~~~~~~d~~~~---~~--~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~-ppI~ITENG~~ 424 (458)
+|+..+... +... ...+.... .. ......+..+.+++||+ |+|+||+.+|++++++|++ |||||||||++
T Consensus 303 ~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~ 379 (469)
T PRK13511 303 WMRAYDGETEIIHN--GTGEKGSSKYQLKGVGERVKPPDVPTTDWDWI-IYPQGLYDQLMRIKKDYPNYKKIYITENGLG 379 (469)
T ss_pred eeecCCCccccccC--CCCccccccccccCccccccCCCCCcCCCCCe-ECcHHHHHHHHHHHHHcCCCCCEEEecCCcC
Confidence 997532110 0000 00000000 00 00001122356789996 9999999999999999997 67999999999
Q ss_pred CCCCCCCCCCCCcCChhhHHHHHHHHHHHHHhhC
Q 012716 425 PPKQKNQRSQDLVDDVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 425 ~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~AI~ 458 (458)
..|+ .+.+++++|++||+||++||++|++||+
T Consensus 380 ~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~ 411 (469)
T PRK13511 380 YKDE--FVDGKTVDDDKRIDYVKQHLEVISDAIS 411 (469)
T ss_pred CCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 8764 2456789999999999999999999984
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.9e-108 Score=861.47 Aligned_cols=388 Identities=32% Similarity=0.504 Sum_probs=338.7
Q ss_pred CCCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEeccCCCc
Q 012716 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPR 122 (458)
Q Consensus 43 ~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~r 122 (458)
+||++|+||+|||||||||+++++|||+|+||.+++.+++ .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 6999999999999999999999999999999999875543 367899999999999999999999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEEE
Q 012716 123 ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWA 202 (458)
Q Consensus 123 i~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~ 202 (458)
|+|+| .|.+|++||+||+++|++|+++||+|||||+|||+|+||+++ |||+|++++++|++||+.||++||+ |++|+
T Consensus 79 I~P~g-~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTG-YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 99998 589999999999999999999999999999999999999987 9999999999999999999999998 99999
Q ss_pred eccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecCceeec
Q 012716 203 TLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEP 282 (458)
Q Consensus 203 t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~P 282 (458)
|||||++++..||..|.+|||.+.. .++.++++||+++|||+||++||+. .++++||++++..++||
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~P 222 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYP 222 (467)
T ss_pred EecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceeEE
Confidence 9999999999999999999996321 1468999999999999999999986 57899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhcc------CCCCCHhhHhhh---cCCCceEeecccccee
Q 012716 283 LR-DEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ------LPRFSKEETKYV---KGSLDFIGINHYSTLY 352 (458)
Q Consensus 283 ~~-~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~------lp~ft~~d~~~i---kg~~DFiGiNyYts~~ 352 (458)
.+ ++|+|++||++++++.++||+||+++|+||+.|++.++.+ +|.||++|+++| ++++||||||||+|.+
T Consensus 223 ~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~ 302 (467)
T TIGR01233 223 YDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDW 302 (467)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEcccccee
Confidence 97 8999999999999999999999999999999999988632 378999999999 5899999999999999
Q ss_pred eeecCCccc----cc---CCCcccccceeecccCCCcc-cCCCCCCCCcccChHhHHHHHHHHHHHcCC-CcEEEeecCC
Q 012716 353 AKDCIHSVC----VL---GSNHAIRGFVYTTGERDGIM-IGEPTGNPRFFVVPEGMEKIVDYVKDRYKN-IPMYVTENGY 423 (458)
Q Consensus 353 v~~~~~~~~----~~---~~~~~~d~~~~~~~~~~g~~-~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~-ppI~ITENG~ 423 (458)
|+....... .. ..+......+. ....+ ..+.++|||+ |+|+||+.+|+++++||++ |||||||||+
T Consensus 303 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw~-i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~ 377 (467)
T TIGR01233 303 MQAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDWI-IYPEGLYDQIMRVKNDYPNYKKIYITENGL 377 (467)
T ss_pred eccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCCe-eChHHHHHHHHHHHHHcCCCCCEEEeCCCC
Confidence 975311100 00 00000000000 00011 1246789996 9999999999999999997 7799999999
Q ss_pred CCCCCCCCCCCCCcCChhhHHHHHHHHHHHHHhhC
Q 012716 424 SPPKQKNQRSQDLVDDVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 424 ~~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~AI~ 458 (458)
+..++. .+|.|+|++||+||++||++|++||+
T Consensus 378 ~~~d~~---~~g~i~D~~Ri~Yl~~hl~~~~~Ai~ 409 (467)
T TIGR01233 378 GYKDEF---VDNTVYDDGRIDYVKQHLEVLSDAIA 409 (467)
T ss_pred CCCCCC---CCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 987652 26889999999999999999999984
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=5.8e-108 Score=860.27 Aligned_cols=387 Identities=28% Similarity=0.496 Sum_probs=333.9
Q ss_pred CCCCCCeeccccccccccCCcCCCCCcCccccccc---c-CCCccc----CCC--CCCcCcchhhchHHHHHHHHhcCCC
Q 012716 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFS---H-IPGNIE----NND--NGDVADDHYHRFLEDIGIMHSLGVN 112 (458)
Q Consensus 43 ~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~---~-~~~~i~----~~~--~~~~a~d~y~ry~eDi~l~k~lG~~ 112 (458)
+||++|+||+||||||||||+++||||+|+||.|+ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999998 3 244442 222 5789999999999999999999999
Q ss_pred eEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHH
Q 012716 113 SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFE 192 (458)
Q Consensus 113 ~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~ 192 (458)
+|||||+||||+|+|..|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999854569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEeccCCcccccc-----ccc-ccc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012716 193 NFGDRVKYWATLNEPNLLTDM-----AYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQE 265 (458)
Q Consensus 193 ~~gd~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~ 265 (458)
+|||+||+|+|||||++++.. ||. .|. +|||... .+..++++||+++|||+||+++|+.
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~--- 228 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEI--- 228 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999999999999998766 443 343 3555321 2457999999999999999999986
Q ss_pred CCCCeEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhcc--CCCCCHhhHhhh-cCCCce
Q 012716 266 KQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYV-KGSLDF 342 (458)
Q Consensus 266 ~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~--lp~ft~~d~~~i-kg~~DF 342 (458)
.++++||++++..+++|.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++||
T Consensus 229 ~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 229 NPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred CCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 4788999999999999999999999999998855 579999999999999999999863 489999999988 699999
Q ss_pred EeeccccceeeeecCCcccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecC
Q 012716 343 IGINHYSTLYAKDCIHSVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENG 422 (458)
Q Consensus 343 iGiNyYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG 422 (458)
||||||+|.+|+.....+.. . +..+ .. ... .|..+.+++||+ |+|+||+.+|+++++||++| |||||||
T Consensus 308 lGiNyYts~~v~~~~~~~~~-~--~~~~--~~--~~~--~~~~~~~~~gw~-i~P~Gl~~~L~~~~~~Y~~P-i~ItENG 376 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNPQL-D--YVET--RD--LVS--NPYVKASEWGWQ-IDPAGLRYSLNWFWDHYQLP-LFIVENG 376 (476)
T ss_pred EEEecccCcccccCCCCCCC-C--cccc--cc--ccc--CCCcccCCCCCc-cCcHHHHHHHHHHHHhcCCC-EEEEeCC
Confidence 99999999999753211000 0 0000 00 001 144467889996 99999999999999999975 9999999
Q ss_pred CCCCCCCCCCCCCCcCChhhHHHHHHHHHHHHHhh
Q 012716 423 YSPPKQKNQRSQDLVDDVKRIEYHSGYLSALARAI 457 (458)
Q Consensus 423 ~~~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~AI 457 (458)
++..|+ .+.+|+|+|++||+||++||++|++||
T Consensus 377 ~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai 409 (476)
T PRK09589 377 FGAIDQ--READGTVNDHYRIDYLAAHIREMKKAV 409 (476)
T ss_pred cccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHH
Confidence 998775 346788999999999999999999998
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=4.4e-109 Score=869.43 Aligned_cols=392 Identities=46% Similarity=0.814 Sum_probs=342.9
Q ss_pred CCCCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEeccCCC
Q 012716 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWP 121 (458)
Q Consensus 42 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ 121 (458)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEE
Q 012716 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYW 201 (458)
Q Consensus 122 ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w 201 (458)
||+|+|..|.+|++|++||+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999997569999999999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred EeccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecCceee
Q 012716 202 ATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYE 281 (458)
Q Consensus 202 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~ 281 (458)
+|||||++++..||..|.+|||..+ .++.++++||+++||++||++||+.+ ++++||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 9999999999999999999999654 37889999999999999999999975 799999999999999
Q ss_pred cCCCCHHHH-HHHHHHHHHhhcccccccccCCCChHHHHHhhcc--CCCCCHhhHhhhcCCCceEeeccccceeeeecCC
Q 012716 282 PLRDEDSDR-QAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYVKGSLDFIGINHYSTLYAKDCIH 358 (458)
Q Consensus 282 P~~~~~~D~-~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~--lp~ft~~d~~~ikg~~DFiGiNyYts~~v~~~~~ 358 (458)
|.+++++|. +||++.+++.++||+||+++|+||..|+..++++ +|.||++|+++|++++||+|||||++.+|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999887776 8999999999999999999999999999999987 9999999999999999999999999999998764
Q ss_pred cccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCCCCcC
Q 012716 359 SVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQDLVD 438 (458)
Q Consensus 359 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~ 438 (458)
+...+. ......... ...+.++.+++||+ ++|+|||.+|++++++|++|||||||||++..++.. +++|+
T Consensus 308 ~~~~~~--~~~~~~~~~----~~~~~~~~t~~gw~-i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~---~~~v~ 377 (455)
T PF00232_consen 308 PSSPPS--YDSDAPFGQ----PYNPGGPTTDWGWE-IYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVD---DGKVD 377 (455)
T ss_dssp STSSTT--HEEEESEEE----ECETSSEBCTTSTB-BETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCT---TSHBS
T ss_pred cccccc--ccCCccccc----cccccccccccCcc-cccchHhhhhhhhccccCCCcEEEeccccccccccc---ccCcC
Confidence 322111 100000100 00234567899997 999999999999999999889999999999887632 38999
Q ss_pred ChhhHHHHHHHHHHHHHhhC
Q 012716 439 DVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 439 D~~Ri~yl~~hL~~l~~AI~ 458 (458)
|++||+||++||++|++||+
T Consensus 378 D~~Ri~yl~~hl~~v~~Ai~ 397 (455)
T PF00232_consen 378 DDYRIDYLQDHLNQVLKAIE 397 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999983
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=4.4e-107 Score=853.06 Aligned_cols=389 Identities=26% Similarity=0.429 Sum_probs=335.7
Q ss_pred ccCCCCCCCeeccccccccccCCcCCCCCcCccccccc---c-CCCccc----CC--CCCCcCcchhhchHHHHHHHHhc
Q 012716 40 KRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFS---H-IPGNIE----NN--DNGDVADDHYHRFLEDIGIMHSL 109 (458)
Q Consensus 40 ~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~---~-~~~~i~----~~--~~~~~a~d~y~ry~eDi~l~k~l 109 (458)
++.+||++|+||+||||||||||+++||||+|+||.|+ + .++++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 4 244431 22 26789999999999999999999
Q ss_pred CCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHH
Q 012716 110 GVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKT 189 (458)
Q Consensus 110 G~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~ 189 (458)
|+++|||||+||||+|+|..|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 99999999999999999854679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccEEEeccCCccc-----ccccccc-ccc-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 012716 190 CFENFGDRVKYWATLNEPNLL-----TDMAYIR-GTY-PPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKH 262 (458)
Q Consensus 190 ~~~~~gd~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~ 262 (458)
||++|||+|++|+|||||+++ +..||.. |.+ ||+.. ..+..++++||+++|||+||+++|+.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6678874 665 44321 12468999999999999999999986
Q ss_pred hhcCCCCeEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhccC--CCCCHhhHhhh-cCC
Q 012716 263 FQEKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQL--PRFSKEETKYV-KGS 339 (458)
Q Consensus 263 ~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~l--p~ft~~d~~~i-kg~ 339 (458)
.++++||++++..+++|.+++|+|++||++++. +..||+||+++|+||+.|++.++++. |.++++|+++| +++
T Consensus 231 ---~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 ---NPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred ---CCCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 468999999999999999999999999998773 22359999999999999999998764 78999999999 599
Q ss_pred CceEeeccccceeeeecCCcccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEe
Q 012716 340 LDFIGINHYSTLYAKDCIHSVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVT 419 (458)
Q Consensus 340 ~DFiGiNyYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~IT 419 (458)
+||||||||||.+|+..+... . . ..... .... .|..+.+++||+ |+|+||+.+|+++++||++| ||||
T Consensus 307 ~DFlGiNyYt~~~v~~~~~~~---~--~--~~~~~-~~~~--~~~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~P-i~It 374 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAEGGTG---D--A--ISGFE-GSVP--NPYVKASDWGWQ-IDPVGLRYALCELYERYQKP-LFIV 374 (477)
T ss_pred CCEEEEcceeCeeeccCCCCC---C--C--ccccc-cccC--CCCcccCCCCCc-cCcHHHHHHHHHHHHhcCCC-EEEe
Confidence 999999999999997532100 0 0 00000 0001 133456789996 99999999999999999985 9999
Q ss_pred ecCCCCCCCCCCCCCCCcCChhhHHHHHHHHHHHHHhh
Q 012716 420 ENGYSPPKQKNQRSQDLVDDVKRIEYHSGYLSALARAI 457 (458)
Q Consensus 420 ENG~~~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~AI 457 (458)
|||++..++ .+.+|+|+|++||+||++||++|++||
T Consensus 375 ENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai 410 (477)
T PRK15014 375 ENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAV 410 (477)
T ss_pred CCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 999998765 346789999999999999999999998
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.3e-106 Score=848.06 Aligned_cols=388 Identities=28% Similarity=0.461 Sum_probs=341.0
Q ss_pred CCCCCCeeccccccccccCCcCCCCCcCccccccccCCCccc------------CCC--CCCcCcchhhchHHHHHHHHh
Q 012716 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIE------------NND--NGDVADDHYHRFLEDIGIMHS 108 (458)
Q Consensus 43 ~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~------------~~~--~~~~a~d~y~ry~eDi~l~k~ 108 (458)
+||++|+||+||||||||||+++||||+|+||.+++.++++. ++. ++++||||||||+|||+|||+
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 699999999999999999999999999999999998666542 222 678999999999999999999
Q ss_pred cCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHH
Q 012716 109 LGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAK 188 (458)
Q Consensus 109 lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~ 188 (458)
||+++|||||+|+||+|+|..+.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999985456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccEEEeccCCccccccccc-ccc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 012716 189 TCFENFGDRVKYWATLNEPNLLTDMAYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEK 266 (458)
Q Consensus 189 ~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~ 266 (458)
.|+++|||+|++|+|||||++++..||. .|. +|||... .+..++++||+++|||+||+++|+. .
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~---~ 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEV---N 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 9999999999999999999999999996 665 5887422 2457999999999999999999986 3
Q ss_pred CCCeEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhcc--CCCCCHhhHhhhcCCCceEe
Q 012716 267 QGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYVKGSLDFIG 344 (458)
Q Consensus 267 ~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~--lp~ft~~d~~~ikg~~DFiG 344 (458)
++++||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999999877 55789999999999999999999864 79999999999999999999
Q ss_pred eccccceeeeecCCcccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecCCC
Q 012716 345 INHYSTLYAKDCIHSVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENGYS 424 (458)
Q Consensus 345 iNyYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~ 424 (458)
||||+|.+|+....... . . ....+.. .. .|..+.+++||+ |+|+||+.+|+++++||++| |||||||++
T Consensus 308 iNyYt~~~v~~~~~~~~--~--~-~~~~~~~--~~--~p~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~ 376 (474)
T PRK09852 308 FSYYASRCASAEMNANN--S--S-AANVVKS--LR--NPYLQVSDWGWG-IDPLGLRITMNMMYDRYQKP-LFLVENGLG 376 (474)
T ss_pred EccccCeecccCCCCCC--C--C-cCCceec--cc--CCCcccCCCCCe-eChHHHHHHHHHHHHhcCCC-EEEeCCCCC
Confidence 99999999975321100 0 0 0000000 01 244567889996 99999999999999999986 999999999
Q ss_pred CCCCCCCCCCCCcCChhhHHHHHHHHHHHHHhhC
Q 012716 425 PPKQKNQRSQDLVDDVKRIEYHSGYLSALARAIR 458 (458)
Q Consensus 425 ~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~AI~ 458 (458)
..|+ .+.+|+|+|++||+||++||++|++||+
T Consensus 377 ~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~ 408 (474)
T PRK09852 377 AKDE--IAANGEINDDYRISYLREHIRAMGEAIA 408 (474)
T ss_pred CCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 8775 3467899999999999999999999984
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=8.7e-105 Score=828.50 Aligned_cols=379 Identities=42% Similarity=0.697 Sum_probs=345.2
Q ss_pred CCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEeccCCCcc
Q 012716 44 FPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRI 123 (458)
Q Consensus 44 fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri 123 (458)
||++|+||+|||||||||+++++|||+|+||.+++.++++.++.++++||||||||+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998777766677899999999999999999999999999999999999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEEEe
Q 012716 124 LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWAT 203 (458)
Q Consensus 124 ~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t 203 (458)
+|+| .|.+|+++++||+++|++|+++||+|||||+|||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+|
T Consensus 81 ~p~g-~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEG-TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCC-CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 9997 589999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEecCceeecC
Q 012716 204 LNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEPL 283 (458)
Q Consensus 204 ~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~P~ 283 (458)
||||++++..||..|.+||+.++. +..++++||+++|||+||+++|+.. |+++||++++..+++|.
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPA 224 (427)
T ss_pred ecCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeC
Confidence 999999999999999999985431 4578999999999999999999864 68999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhccCCCCCHhhHhhhcCCCceEeeccccceeeeecCCccccc
Q 012716 284 RDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKDCIHSVCVL 363 (458)
Q Consensus 284 ~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~lp~ft~~d~~~ikg~~DFiGiNyYts~~v~~~~~~~~~~ 363 (458)
+++|+|++||++++++.++||+||+++|+||+.|++.++ .+|.||++|++++++++||||||||++.+|+......
T Consensus 225 ~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~--- 300 (427)
T TIGR03356 225 SDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG--- 300 (427)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---
Confidence 999999999999999999999999999999999999997 4799999999999999999999999999997532110
Q ss_pred CCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCCCCcCChhhH
Q 012716 364 GSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQDLVDDVKRI 443 (458)
Q Consensus 364 ~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri 443 (458)
. .. . . . .+..+.+++||+ |+|+||+.+|+++++||++|||||||||++..++ .+ +|+++|++||
T Consensus 301 ~----~~--~---~-~--~~~~~~~~~gw~-i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~--~~-~g~~~D~~Ri 364 (427)
T TIGR03356 301 A----GF--V---E-V--PEGVPKTAMGWE-VYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDE--VT-DGEVHDPERI 364 (427)
T ss_pred C----Cc--c---c-c--CCCCCcCCCCCe-echHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCC--Cc-CCCcCCHHHH
Confidence 0 00 0 0 0 122356789995 9999999999999999999889999999998765 23 7889999999
Q ss_pred HHHHHHHHHHHHhhC
Q 012716 444 EYHSGYLSALARAIR 458 (458)
Q Consensus 444 ~yl~~hL~~l~~AI~ 458 (458)
+||++||++|++||+
T Consensus 365 ~yl~~hl~~~~~Ai~ 379 (427)
T TIGR03356 365 AYLRDHLAALARAIE 379 (427)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999984
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.17 E-value=5.2e-11 Score=122.93 Aligned_cols=109 Identities=27% Similarity=0.438 Sum_probs=87.2
Q ss_pred hchHHHHHHHHhcCCCeEEe-ccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhh----
Q 012716 97 HRFLEDIGIMHSLGVNSYRF-SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY---- 171 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~-si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---- 171 (458)
.++++|+++||++|+|++|+ .++|++++|++ |.+|. ..+|++|+.+.++||++++.+.....|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e--G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE--GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT--TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC--Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 46899999999999999996 67999999997 99998 4588999999999999999999999999998654
Q ss_pred -----------CC-----CCChHhHHHHHHHHHHHHHHhCCC--ccEEEeccCCccc
Q 012716 172 -----------GS-----WLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNLL 210 (458)
Q Consensus 172 -----------gg-----w~~~~~~~~F~~ya~~~~~~~gd~--v~~w~t~NEp~~~ 210 (458)
|+ ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 124567888888899999999985 7899999999764
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.17 E-value=8.3e-11 Score=115.37 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=90.9
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccc-cCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCC-C
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRIL-PKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW-L 175 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~-p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw-~ 175 (458)
..++|++.||++|+|++|+.|.|..++ |.+ .+.++...++.++++|+.+.++||.++++||+. |.|.... +++ .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~-~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP-GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST-TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC-CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 578999999999999999999998888 455 457999999999999999999999999999974 6664322 233 3
Q ss_pred ChHhHHHHHHHHHHHHHHhCC--CccEEEeccCCccc
Q 012716 176 SPQMQKEFVHLAKTCFENFGD--RVKYWATLNEPNLL 210 (458)
Q Consensus 176 ~~~~~~~F~~ya~~~~~~~gd--~v~~w~t~NEp~~~ 210 (458)
.....+.|.++++.++++|++ .|..|.++|||...
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 345788899999999999954 68899999999874
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.16 E-value=3.5e-09 Score=103.66 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=71.8
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcc--eEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhC
Q 012716 118 ISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEP--FVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 118 i~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~g 195 (458)
..|++++|++ |.+|++. .|.+++.++++||++ -+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~--G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR--GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC--CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999997 9999855 678999999999995 4456788999998642 2 56789999999999999999
Q ss_pred CCccEEEeccCCcc
Q 012716 196 DRVKYWATLNEPNL 209 (458)
Q Consensus 196 d~v~~w~t~NEp~~ 209 (458)
++|..|.++|||..
T Consensus 72 g~i~~wdV~NE~~~ 85 (254)
T smart00633 72 GKIYAWDVVNEALH 85 (254)
T ss_pred CcceEEEEeeeccc
Confidence 99999999999985
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.73 E-value=1.1e-06 Score=88.98 Aligned_cols=207 Identities=20% Similarity=0.273 Sum_probs=121.6
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC---CCCchhHHHhhCCCCC
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH---HDFPQQLEEKYGSWLS 176 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~ggw~~ 176 (458)
++=+++||+.|+|++|+-+ | +-|.. .|.-| ++.-.++....+++||+.++++|- |.=|.--... ..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~-~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD-GGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT-TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc-cccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCC
Confidence 3457999999999999966 3 23332 25555 467788999999999999999984 3333211111 57987
Q ss_pred ---hHhHHHHHHHHHHHHHHhCC---CccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 012716 177 ---PQMQKEFVHLAKTCFENFGD---RVKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLL 250 (458)
Q Consensus 177 ---~~~~~~F~~ya~~~~~~~gd---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~ll 250 (458)
.+..+.-.+|.+.+++.+++ .++++++=||.+.-.. +|-|.. ..+.-.-.++.
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll~ 157 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLLN 157 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHHH
Confidence 57788888888888776654 6899999999874222 444432 22344455666
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccccccCCCChHHHHHhhccCCCCCH
Q 012716 251 SHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSK 330 (458)
Q Consensus 251 AHa~av~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~~~~~lp~ft~ 330 (458)
|=.+|| |+. .++.+|.+-+... .|... ..||.|-+.
T Consensus 158 ag~~AV---r~~---~p~~kV~lH~~~~---------~~~~~--------~~~~f~~l~--------------------- 193 (332)
T PF07745_consen 158 AGIKAV---REV---DPNIKVMLHLANG---------GDNDL--------YRWFFDNLK--------------------- 193 (332)
T ss_dssp HHHHHH---HTH---SSTSEEEEEES-T---------TSHHH--------HHHHHHHHH---------------------
T ss_pred HHHHHH---Hhc---CCCCcEEEEECCC---------CchHH--------HHHHHHHHH---------------------
Confidence 555554 443 4677876544421 12111 123333321
Q ss_pred hhHhhhcCCCceEeeccccceeeeecCCcccccCCCcccccceeecccCCCcccCCCCCCCCcccChHhHHHHHHHHHHH
Q 012716 331 EETKYVKGSLDFIGINHYSTLYAKDCIHSVCVLGSNHAIRGFVYTTGERDGIMIGEPTGNPRFFVVPEGMEKIVDYVKDR 410 (458)
Q Consensus 331 ~d~~~ikg~~DFiGiNyYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~t~~gW~~i~P~GL~~~L~~i~~r 410 (458)
.-....|.||++||.- | . -....|+..|+.+.+|
T Consensus 194 ----~~g~d~DviGlSyYP~----------------w-------------------------~-~~l~~l~~~l~~l~~r 227 (332)
T PF07745_consen 194 ----AAGVDFDVIGLSYYPF----------------W-------------------------H-GTLEDLKNNLNDLASR 227 (332)
T ss_dssp ----HTTGG-SEEEEEE-ST----------------T-------------------------S-T-HHHHHHHHHHHHHH
T ss_pred ----hcCCCcceEEEecCCC----------------C-------------------------c-chHHHHHHHHHHHHHH
Confidence 1124569999999930 1 1 1456899999999999
Q ss_pred cCCCcEEEeecCCCCC
Q 012716 411 YKNIPMYVTENGYSPP 426 (458)
Q Consensus 411 Y~~ppI~ITENG~~~~ 426 (458)
|++ ||+|+|.|++..
T Consensus 228 y~K-~V~V~Et~yp~t 242 (332)
T PF07745_consen 228 YGK-PVMVVETGYPWT 242 (332)
T ss_dssp HT--EEEEEEE---SB
T ss_pred hCC-eeEEEecccccc
Confidence 988 599999998876
No 18
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=2.9e-06 Score=92.51 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=91.2
Q ss_pred chHHHHHHHHhcCCCeEEe-ccCCCccccCCCCCCCChhHHHHHHHH-HHHHHHcCCcceEee-cCCCCchhHHHhh---
Q 012716 98 RFLEDIGIMHSLGVNSYRF-SISWPRILPKGRFGKVNPAGINFYNYL-IDNLLLRGIEPFVTI-YHHDFPQQLEEKY--- 171 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~-si~W~ri~p~~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~--- 171 (458)
-+++|+++||++|+|++|. -++|++++|+. |++|.. +.|.. ++.+.+.||..++.- .....|.|+..+|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e--G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE--GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc--cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 3789999999999999999 55999999997 999987 56666 999999999999988 7788899997764
Q ss_pred ------------CCCCChHhHH-HHHHHHHH----HHHH-hCC--CccEEEeccCCcc-ccccccccccc
Q 012716 172 ------------GSWLSPQMQK-EFVHLAKT----CFEN-FGD--RVKYWATLNEPNL-LTDMAYIRGTY 220 (458)
Q Consensus 172 ------------ggw~~~~~~~-~F~~ya~~----~~~~-~gd--~v~~w~t~NEp~~-~~~~gy~~g~~ 220 (458)
|+|.+-+... .|..|++. +.+| ||+ .|-.|.+-||=.. .|...|....|
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f 175 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAF 175 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHH
Confidence 5675544333 36777776 6677 776 4788999998665 44444444433
No 19
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.00 E-value=0.00055 Score=75.28 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=65.2
Q ss_pred hchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHH-------
Q 012716 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE------- 169 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~------- 169 (458)
..+..|+++||++|+|++|+|- .|.. .++.+.|=+.||-++.-+.-|....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~-------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS-------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC-------------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 4578999999999999999962 3432 26788889999988765532222222210
Q ss_pred hhCCCC----ChHhHHHHHHHHHHHHHHhCCC--ccEEEeccCC
Q 012716 170 KYGSWL----SPQMQKEFVHLAKTCFENFGDR--VKYWATLNEP 207 (458)
Q Consensus 170 ~~ggw~----~~~~~~~F~~ya~~~~~~~gd~--v~~w~t~NEp 207 (458)
....|. +++..+.+.+-++.+++++..+ |-.|.+-||+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~ 418 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEP 418 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCC
Confidence 001232 3567788889899999999875 7799999996
No 20
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.002 Score=63.31 Aligned_cols=139 Identities=21% Similarity=0.278 Sum_probs=80.4
Q ss_pred ccCCCCCCCeecccccc-ccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEecc
Q 012716 40 KRSDFPDGFLFGTATSS-FQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSI 118 (458)
Q Consensus 40 ~~~~fP~~FlwG~Atsa-~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si 118 (458)
.....|++|+.|+-.|. .|+|-. ++ .|..+ ++. -++-++.+|+.|+|.+|+-|
T Consensus 31 ~v~~~~~dFikGaDis~l~~lE~~---Gv-------kf~d~--------ng~--------~qD~~~iLK~~GvNyvRlRv 84 (403)
T COG3867 31 PVENSPNDFIKGADISSLIELENS---GV-------KFFDT--------NGV--------RQDALQILKNHGVNYVRLRV 84 (403)
T ss_pred eccCChHHhhccccHHHHHHHHHc---Cc-------eEEcc--------CCh--------HHHHHHHHHHcCcCeEEEEE
Confidence 33468999999987554 567641 11 11111 121 13446999999999999966
Q ss_pred CCCccccC-CC--CCCCChhHHHHHHHHHHHHHHcCCcceEeec---CCCCchhHHHhhCCCCC---hHhHHHHHHHHHH
Q 012716 119 SWPRILPK-GR--FGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---HHDFPQQLEEKYGSWLS---PQMQKEFVHLAKT 189 (458)
Q Consensus 119 ~W~ri~p~-~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~ggw~~---~~~~~~F~~ya~~ 189 (458)
|-.=... |. .|.-|. ++---++-..+++.||++++..| ||.=|..- ++-..|.+ ++...+--+|.+.
T Consensus 85 -wndP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~ 160 (403)
T COG3867 85 -WNDPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKY 160 (403)
T ss_pred -ecCCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHH
Confidence 2111111 10 122222 33345666778899999999998 46666432 22245755 3344445556666
Q ss_pred HHHHh---CCCccEEEeccCCc
Q 012716 190 CFENF---GDRVKYWATLNEPN 208 (458)
Q Consensus 190 ~~~~~---gd~v~~w~t~NEp~ 208 (458)
+++.+ |-....-++=||-+
T Consensus 161 ~l~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 161 VLTTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred HHHHHHHcCCCccceEeccccC
Confidence 65555 44566667888865
No 21
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=4.8e-05 Score=79.63 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCC-CC-CCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhh---CCC
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKG-RF-GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY---GSW 174 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~-~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---ggw 174 (458)
++|+..||+.|+|++|+.+.|-.+.+.+ .. ...+...+.+.+++|+.+++.||.+++.||+..-+.--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866655432 01 223244556899999999999999999999865222212210 122
Q ss_pred C-ChHhHHHHHHHHHHHHHHhCCC--ccEEEeccCCcc
Q 012716 175 L-SPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (458)
Q Consensus 175 ~-~~~~~~~F~~ya~~~~~~~gd~--v~~w~t~NEp~~ 209 (458)
. ..+.++++.+-.+.++.+|++. |--..++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3567899999999999999983 444679999985
No 22
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=97.73 E-value=0.00011 Score=78.59 Aligned_cols=106 Identities=25% Similarity=0.442 Sum_probs=62.8
Q ss_pred hHHHHHHHH-hcCCCeEEec--c--CCCcccc-CCCCCC--CChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHh
Q 012716 99 FLEDIGIMH-SLGVNSYRFS--I--SWPRILP-KGRFGK--VNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (458)
Q Consensus 99 y~eDi~l~k-~lG~~~~R~s--i--~W~ri~p-~~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 170 (458)
+++.+..++ ++||+.+||- + +..-... ++ +|. +|+ ...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~-~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE-DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET-TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhcccccc-CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 667776665 9999999985 2 2222222 22 232 787 66789999999999999999975 77766321
Q ss_pred ------hCCCC-ChHhHHHHHHHHHHHHHH----hCC-Ccc--EEEeccCCccc
Q 012716 171 ------YGSWL-SPQMQKEFVHLAKTCFEN----FGD-RVK--YWATLNEPNLL 210 (458)
Q Consensus 171 ------~ggw~-~~~~~~~F~~ya~~~~~~----~gd-~v~--~w~t~NEp~~~ 210 (458)
+.|+. .|+..+.+.++++.+++| ||. .|. +|.+||||++.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12222 346677777777666555 552 465 56899999974
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.37 E-value=0.0008 Score=68.21 Aligned_cols=124 Identities=20% Similarity=0.294 Sum_probs=86.7
Q ss_pred CCCCCeeccccccccccCCcCCCCCcCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEeccCCCcc
Q 012716 44 FPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRI 123 (458)
Q Consensus 44 fP~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri 123 (458)
...+|.+|+|.++.++++.. .|++-+. +.-+.=+..-..-|..+
T Consensus 6 ~~~~f~~G~av~~~~~~~~~----------------------------------~~~~~~~--~~Fn~~t~eN~~Kw~~~ 49 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP----------------------------------RYRELFA--KHFNSVTPENEMKWGSI 49 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH----------------------------------HHHHHHH--HH-SEEEESSTTSHHHH
T ss_pred HhccCCEEEEechhHcCCcH----------------------------------HHHHHHH--HhCCeeeeccccchhhh
Confidence 35678999999999888720 1111111 22222233334789999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE--eecCCCCchhHHHhhCCCCChH---hHHHHHHHHHHHHHHhCC--
Q 012716 124 LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV--TIYHHDFPQQLEEKYGSWLSPQ---MQKEFVHLAKTCFENFGD-- 196 (458)
Q Consensus 124 ~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~ggw~~~~---~~~~F~~ya~~~~~~~gd-- 196 (458)
+|.. |.+|.+. .+++++-++++||++-- .+.|--.|.|+... .-+...+ ..+...+|.+.+++||++
T Consensus 50 e~~~--g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g 123 (320)
T PF00331_consen 50 EPEP--GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKG 123 (320)
T ss_dssp ESBT--TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCC--CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcccc
Confidence 9997 9999855 78999999999999873 45576899999753 1233333 788999999999999994
Q ss_pred CccEEEeccCCcc
Q 012716 197 RVKYWATLNEPNL 209 (458)
Q Consensus 197 ~v~~w~t~NEp~~ 209 (458)
+|..|=+.|||.-
T Consensus 124 ~i~~WDVvNE~i~ 136 (320)
T PF00331_consen 124 RIYAWDVVNEAID 136 (320)
T ss_dssp TESEEEEEES-B-
T ss_pred ceEEEEEeeeccc
Confidence 8999999999964
No 24
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.14 E-value=0.00052 Score=69.55 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=64.5
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec---C--C---CCchhHHH
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---H--H---DFPQQLEE 169 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H--~---~~P~~l~~ 169 (458)
.|++-++.||++|+|++-+-|.|.-.+|.+ |++|..|..=.+.+|+.++++||.+++-.= | | .+|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT--TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC--CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 378889999999999999999999999997 999999988899999999999999776422 1 3 48999986
Q ss_pred hhCCC---CChHhHHHHHHHHHHHHHHhCC
Q 012716 170 KYGSW---LSPQMQKEFVHLAKTCFENFGD 196 (458)
Q Consensus 170 ~~ggw---~~~~~~~~F~~ya~~~~~~~gd 196 (458)
+.+.. .++...+.-.+|.+.+++...+
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 132 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKP 132 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 53332 2344555555666666555543
No 25
>PLN03059 beta-galactosidase; Provisional
Probab=96.93 E-value=0.0042 Score=69.52 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=75.7
Q ss_pred hchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee--------cCCCCchhHH
Q 012716 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI--------YHHDFPQQLE 168 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~ 168 (458)
..|++=++.||++|+|++-.=|.|.-.||.+ |++|.+|..=..++|+.+.+.||-+++-. ..-.+|.||.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~--G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP--GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC--CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 3478889999999999999999999999997 99999999999999999999998877643 2347899997
Q ss_pred HhhCCCC----ChHhHHHHHHHHHHHHHHh
Q 012716 169 EKYGSWL----SPQMQKEFVHLAKTCFENF 194 (458)
Q Consensus 169 ~~~ggw~----~~~~~~~F~~ya~~~~~~~ 194 (458)
.. .|.. ++...++-.+|.+.++...
T Consensus 137 ~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 137 YV-PGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred cC-CCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 54 4532 4455555566666666655
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.73 E-value=0.0016 Score=67.09 Aligned_cols=107 Identities=19% Similarity=0.316 Sum_probs=80.4
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec-C-----------CCC
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------HDF 163 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 163 (458)
+.-.+..++.+|.+|++.+-+.+=|-.+|..+ .+++|+++ |+++++.+++.|++..+.|. | .-+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~-p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEG-PQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS-TTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC-CCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 34788999999999999999999999999997 59999966 99999999999999888763 3 368
Q ss_pred chhHHHh-----------hCC--------CCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcc
Q 012716 164 PQQLEEK-----------YGS--------WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 164 P~~l~~~-----------~gg--------w~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~ 209 (458)
|.|+.+. .|. |....+++.+.+|-+.+.++|.+.. -|+-|..+
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~v 152 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQV 152 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEEE
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEEe
Confidence 9998643 122 4444459999999999999997764 46666543
No 27
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.72 E-value=0.011 Score=60.74 Aligned_cols=101 Identities=21% Similarity=0.374 Sum_probs=55.3
Q ss_pred HhcCCCeEEecc---C------------CCccc--cCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHH
Q 012716 107 HSLGVNSYRFSI---S------------WPRIL--PKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE 169 (458)
Q Consensus 107 k~lG~~~~R~si---~------------W~ri~--p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 169 (458)
+.||++.+|+.| + |.|.+ +.. +|.+|+.+=+-=+.++++++++|+.-++ ++=+..|.|+-.
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~-dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~ 134 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPA-DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTK 134 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-T-TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCC-CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhc
Confidence 358999999877 3 33432 122 5778876545556689999999999876 555777777643
Q ss_pred hh---CC-----CCChHhHHHHHHHHHHHHHHh---CCCccEEEeccCCcc
Q 012716 170 KY---GS-----WLSPQMQKEFVHLAKTCFENF---GDRVKYWATLNEPNL 209 (458)
Q Consensus 170 ~~---gg-----w~~~~~~~~F~~ya~~~~~~~---gd~v~~w~t~NEp~~ 209 (458)
.. |+ =+.++..+.|++|...|+++| |-.+++-.++|||+.
T Consensus 135 NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 NGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 21 11 145678999999999999998 336899999999983
No 28
>PLN02803 beta-amylase
Probab=96.54 E-value=0.0089 Score=63.25 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=83.1
Q ss_pred hchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC------------CCc
Q 012716 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH------------DFP 164 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------~~P 164 (458)
.-.+..++.+|.+|++.+-+.+=|--+|.++ .+++||.| |+++++.+++.|++..+.|.-. -+|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~-p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDG-PMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 4478899999999999999999999999987 69999966 9999999999999987776533 599
Q ss_pred hhHHHh--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcc
Q 012716 165 QQLEEK--------Y---GSW----------------LSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 165 ~~l~~~--------~---ggw----------------~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~ 209 (458)
+|+.+. | .|- ..+.-++.|.+|-+.+-++|.+... -|+.|..+
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 998652 0 121 2233457788888888888877553 46777554
No 29
>PLN00197 beta-amylase; Provisional
Probab=96.51 E-value=0.0098 Score=63.14 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=83.2
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC------------CCch
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH------------DFPQ 165 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------~~P~ 165 (458)
-.+..++.+|.+|++.+-+.+=|--+|+++ .+++||.| |+++++.+++.|++..+.|.-. -+|+
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~-p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERES-PGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 478899999999999999999999999987 69999966 9999999999999988777533 5999
Q ss_pred hHHHh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcc
Q 012716 166 QLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 166 ~l~~~--------~---ggw~----------------~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~ 209 (458)
|+.+. | .|-. .+.-++-|.+|-+.+-.+|.+..+ -|+.|..+
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 98652 0 1211 223368888888888888877554 36777554
No 30
>PLN02161 beta-amylase
Probab=96.44 E-value=0.013 Score=61.66 Aligned_cols=111 Identities=12% Similarity=0.167 Sum_probs=86.4
Q ss_pred cchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC-----------
Q 012716 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH----------- 161 (458)
Q Consensus 93 ~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~----------- 161 (458)
..+..-.+..++.+|.+|++.+-+.+=|--+|.++ .+++|+.+ |+++++.+++.|++..+.|.-.
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~-p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS-PLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 46677788999999999999999999999999987 69999966 9999999999999987776533
Q ss_pred -CCchhHHHh--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcc
Q 012716 162 -DFPQQLEEK--------Y---GSW----------------LSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 162 -~~P~~l~~~--------~---ggw----------------~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~ 209 (458)
-+|+|+.+. | .|. ..+.-++.|.+|-+.+.++|.+... -|+.|..+
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998652 0 121 2233457888888888888877553 36666554
No 31
>PLN02801 beta-amylase
Probab=96.37 E-value=0.018 Score=60.68 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=78.0
Q ss_pred hchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC------------CCCc
Q 012716 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH------------HDFP 164 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H------------~~~P 164 (458)
.-.+..++.+|.+|++.+-+.+=|--+|.++ .+++|+++ |+++++.+++.|++..+.|.- .-+|
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~-P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKG-PKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCC-CCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3478899999999999999999999999987 59999966 999999999999998776653 2599
Q ss_pred hhHHHh--------h---CC----------------CCChHhHHHHHHHHHHHHHHhCCCc
Q 012716 165 QQLEEK--------Y---GS----------------WLSPQMQKEFVHLAKTCFENFGDRV 198 (458)
Q Consensus 165 ~~l~~~--------~---gg----------------w~~~~~~~~F~~ya~~~~~~~gd~v 198 (458)
+|+.+. | .| +..+.-++.+.+|-+.+-++|.+..
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 998752 0 12 1223346888888888888887743
No 32
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.15 E-value=0.026 Score=56.43 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=62.8
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCC--
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGS-- 173 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg-- 173 (458)
...++.|+.+||+||+|++|++. .|.. .++++.|-+.||-++.-+..+..-.|-. .+-
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~-------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS-------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S-------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc-------------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 57899999999999999999943 2221 2667788899999887664321111110 010
Q ss_pred --CCChHhHHHHHHHHHHHHHHhCC--CccEEEeccCC
Q 012716 174 --WLSPQMQKEFVHLAKTCFENFGD--RVKYWATLNEP 207 (458)
Q Consensus 174 --w~~~~~~~~F~~ya~~~~~~~gd--~v~~w~t~NEp 207 (458)
-.+++..+.+.+-++.+++++.+ .|-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 13577888888888999999987 48899999998
No 33
>PLN02905 beta-amylase
Probab=96.05 E-value=0.034 Score=59.84 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=83.7
Q ss_pred cchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC-----------
Q 012716 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH----------- 161 (458)
Q Consensus 93 ~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~----------- 161 (458)
.....-.+..++.+|.+|++.+-+.+=|--+|+++ .+++||.| |+++++.+++.|++..+.|.-.
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g-P~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA-PQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 35566688999999999999999999999999987 69999966 9999999999999988777533
Q ss_pred -CCchhHHHh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcc
Q 012716 162 -DFPQQLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 162 -~~P~~l~~~--------~---ggw~----------------~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~ 209 (458)
-+|+|+.+. | .|-. .+.-++.|.+|-+.+-.+|.+...- -|+.|..+
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 432 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVEV 432 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 599998652 1 1211 2334578888888877777664210 14555443
No 34
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=95.98 E-value=0.062 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCCeEEecc--CCCcc--------cc--CCCC-----CCCChhHHHHHHHHHHHHHHcCCcceEeecCCC
Q 012716 100 LEDIGIMHSLGVNSYRFSI--SWPRI--------LP--KGRF-----GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD 162 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si--~W~ri--------~p--~~~~-----g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 162 (458)
+.=++..|+-|||.+|+.+ .|.+. .| .... ..+|++=.++.+++|+.|.+.||+|.+.+.| .
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3447889999999999998 44433 11 1100 1379999999999999999999999876654 1
Q ss_pred CchhHHHhhCCCCC---hHhHHHHHHHHHHHHHHhCCC-ccEEEeccCC
Q 012716 163 FPQQLEEKYGSWLS---PQMQKEFVHLAKTCFENFGDR-VKYWATLNEP 207 (458)
Q Consensus 163 ~P~~l~~~~ggw~~---~~~~~~F~~ya~~~~~~~gd~-v~~w~t~NEp 207 (458)
.|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 121 11 44532 234677788999999999997 4678888885
No 35
>PLN02705 beta-amylase
Probab=95.92 E-value=0.029 Score=60.17 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=81.8
Q ss_pred hhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC------------C
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH------------D 162 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------~ 162 (458)
+-.-.+..++.+|.+|++.+-+.+=|-.+|.++ .+++||.| |+++++.+++.|++..+.|.-. -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~-P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWN-PQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 345588899999999999999999999999987 69999966 9999999999999977776532 5
Q ss_pred CchhHHHh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcc
Q 012716 163 FPQQLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 163 ~P~~l~~~--------~---ggw~----------------~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~ 209 (458)
+|+|+.+. | .|-. .+.-++.|.+|.+.+-.+|.+...- -|+.|..+
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 414 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVEI 414 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEEe
Confidence 99998752 0 1211 2334578888888887777664210 14555443
No 36
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=95.59 E-value=0.035 Score=55.48 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=70.7
Q ss_pred ccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE--eecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHh
Q 012716 117 SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV--TIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENF 194 (458)
Q Consensus 117 si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~ 194 (458)
-+-|.-|+|+. |.+|+++ =|.+++-++++||..-- -+.|--.|.|+.. --+..+...+...+|-..|++||
T Consensus 66 emKwe~i~p~~--G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 66 EMKWEAIEPER--GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred ccccccccCCC--CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 35688999976 9999977 57899999999997432 2346678889853 23777899999999999999999
Q ss_pred CCCccEEEeccCCcc
Q 012716 195 GDRVKYWATLNEPNL 209 (458)
Q Consensus 195 gd~v~~w~t~NEp~~ 209 (458)
.+.|.-|=+.|||.-
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999964
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.14 E-value=0.36 Score=44.27 Aligned_cols=102 Identities=16% Similarity=0.332 Sum_probs=63.6
Q ss_pred hchHHHHHHHHhcCCCeEEeccCCCcc-----ccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHh
Q 012716 97 HRFLEDIGIMHSLGVNSYRFSISWPRI-----LPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~si~W~ri-----~p~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 170 (458)
.+|+++++.||++|++++=+- |+.. .|... .+.+.....+....+++++.+.||++++.|+. -|.|.+.
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 359999999999999987433 4333 22210 01222344567899999999999999999985 3455542
Q ss_pred hCCCCChH-hHHHHHHHHHHHHHHhCCC--ccEEEeccCC
Q 012716 171 YGSWLSPQ-MQKEFVHLAKTCFENFGDR--VKYWATLNEP 207 (458)
Q Consensus 171 ~ggw~~~~-~~~~F~~ya~~~~~~~gd~--v~~w~t~NEp 207 (458)
.+.+ -++.=..-++.+.++||.+ +.-|-.-.|+
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~ 130 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEI 130 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEeccc
Confidence 1211 2222234566777788774 4445555554
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.46 E-value=0.33 Score=52.87 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=76.7
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee--------cCCCCchhHHH
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI--------YHHDFPQQLEE 169 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~ 169 (458)
.|++=|+.+|++|+|++..=+.|.-.+|.. |++|.+|.-=..++|..+.++|+-+++-+ .+-.+|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~--g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP--GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC--CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 477889999999999999999999999997 99999998777888999999998755432 35678988876
Q ss_pred hhCCC----CChHhHHHHHHHHHHHHHHh
Q 012716 170 KYGSW----LSPQMQKEFVHLAKTCFENF 194 (458)
Q Consensus 170 ~~ggw----~~~~~~~~F~~ya~~~~~~~ 194 (458)
. .|- .|+.+..++.+|.+.++...
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHHHH
Confidence 5 442 46778888888888887743
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.77 E-value=0.45 Score=55.66 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=64.3
Q ss_pred hhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCC
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW 174 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw 174 (458)
...++++||++||++|+|++|+| ..|.. .++.+.|=+.||-++--..-.....+... ...
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------------p~fydlcDe~GilV~dE~~~e~hg~~~~~--~~~ 428 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------------PLWYELCDRYGLYVVDEANIETHGMVPMN--RLS 428 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHcCCEEEEecCccccCCcccc--CCC
Confidence 35678999999999999999996 34432 24567888899987765421001100000 011
Q ss_pred CChHhHHHHHHHHHHHHHHhCCC--ccEEEeccCCc
Q 012716 175 LSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (458)
Q Consensus 175 ~~~~~~~~F~~ya~~~~~~~gd~--v~~w~t~NEp~ 208 (458)
.+++..+.+.+=++.+++|.+.+ |-.|..-||+.
T Consensus 429 ~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 429 DDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 34666777777788899999885 88999999975
No 40
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=91.98 E-value=0.36 Score=46.83 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=38.6
Q ss_pred hHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCCCCcCChhhHHHHHHHHHHHHH
Q 012716 397 PEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQDLVDDVKRIEYHSGYLSALAR 455 (458)
Q Consensus 397 P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~ 455 (458)
+.++...|..++++|++| |.|||.|+.... ..-.++.-.+|+++-+..|.+
T Consensus 150 ~~~~~~~i~~~~~~~~kP-IWITEf~~~~~~-------~~~~~~~~~~fl~~~~~~ld~ 200 (239)
T PF11790_consen 150 ADDFKDYIDDLHNRYGKP-IWITEFGCWNGG-------SQGSDEQQASFLRQALPWLDS 200 (239)
T ss_pred HHHHHHHHHHHHHHhCCC-EEEEeecccCCC-------CCCCHHHHHHHHHHHHHHHhc
Confidence 347888899999999975 999999986521 122466788899888887753
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.30 E-value=0.87 Score=53.36 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=63.7
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec---C-CCCchhHHHhh
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---H-HDFPQQLEEKY 171 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H-~~~P~~l~~~~ 171 (458)
...+++||++||++|+|++|+| ..|.. ..+.+.|=+.||-++--.. | |.....+. +
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~--~ 413 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND-------------PRFYELCDIYGLFVMAETDVESHGFANVGDIS--R 413 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHCCCEEEECCcccccCcccccccc--c
Confidence 5679999999999999999996 35553 2567788899998776431 1 21110000 0
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhCCC--ccEEEeccCCc
Q 012716 172 GSWLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (458)
Q Consensus 172 ggw~~~~~~~~F~~ya~~~~~~~gd~--v~~w~t~NEp~ 208 (458)
...+++..+.|.+=++.+++|.+.. |-.|..-||..
T Consensus 414 -~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 414 -ITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred -ccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 0123455677777788999999885 78999999973
No 42
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.23 E-value=0.086 Score=55.20 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=79.9
Q ss_pred hHHHHHHHHhcCCCeEEeccCC-CccccCCCCCCCChhH-HHHHHHHHHHHHHcCCcceEeec----C-----CCCchhH
Q 012716 99 FLEDIGIMHSLGVNSYRFSISW-PRILPKGRFGKVNPAG-INFYNYLIDNLLLRGIEPFVTIY----H-----HDFPQQL 167 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W-~ri~p~~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----H-----~~~P~~l 167 (458)
.+.|++.++.+|++..|++|-= ... -+. .|..|.+. +.+-+.+++.+...+|+.++||. | |-+| |.
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~-~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ip-wa 104 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDK-EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIP-WA 104 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhh-hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEee-cC
Confidence 4578899999999999999532 222 222 47888877 89999999999999999999986 3 2233 21
Q ss_pred HHhh--CCCCChHhHHHHHHHHHHHHHHhCCC--ccEEEeccCCcc
Q 012716 168 EEKY--GSWLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (458)
Q Consensus 168 ~~~~--ggw~~~~~~~~F~~ya~~~~~~~gd~--v~~w~t~NEp~~ 209 (458)
..+. .-...+++...|.+|++.+++.|+-. +--|+.-|||.+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 0000 11345678888999999999988875 577999999766
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=89.55 E-value=1.6 Score=49.69 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=66.3
Q ss_pred cchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhC
Q 012716 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYG 172 (458)
Q Consensus 93 ~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g 172 (458)
+-.+..+.+|+++||++|+|++|.| -.|.. ..+.+.|-+.||=++=-..+ +- ++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------------~~~ydLcDelGllV~~Ea~~-----~~---~~ 370 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-------------EEFYDLCDELGLLVIDEAMI-----ET---HG 370 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------------HHHHHHHHHhCcEEEEecch-----hh---cC
Confidence 3446679999999999999999998 55664 25566777889987764432 11 13
Q ss_pred CCCChHhHHHHHHHHHHHHHHhCC--CccEEEeccCCc
Q 012716 173 SWLSPQMQKEFVHLAKTCFENFGD--RVKYWATLNEPN 208 (458)
Q Consensus 173 gw~~~~~~~~F~~ya~~~~~~~gd--~v~~w~t~NEp~ 208 (458)
+..+++..+...+=++.+++|-.. .|-.|..=||.+
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 345566677777778888888877 488999999965
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=88.30 E-value=0.95 Score=46.81 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=72.4
Q ss_pred HHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCC-C-hHhHHHH
Q 012716 106 MHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWL-S-PQMQKEF 183 (458)
Q Consensus 106 ~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~-~-~~~~~~F 183 (458)
-+|+|++..|.---|.-++.. =-+++ .++++++|.+.+.|+.-+.+-.||+.+.-....|.+=. . ....+.+
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~---~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK---LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeecc---ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 468999999988888833332 23454 78999999999999444445667777765544333322 2 2588999
Q ss_pred HHHHHHHHHHhCCC---ccEEEeccCCccccc
Q 012716 184 VHLAKTCFENFGDR---VKYWATLNEPNLLTD 212 (458)
Q Consensus 184 ~~ya~~~~~~~gd~---v~~w~t~NEp~~~~~ 212 (458)
+++++.|+.++|-+ .=..+.+||||..+.
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 99999999999964 334569999998754
No 45
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=87.81 E-value=2.8 Score=41.55 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=72.1
Q ss_pred cCccccccccCCCcccCCCCCCcCcchhhchHHHHHHHHhcCCCeEEeccCCCccccCCC---CCCCChhHHHHHHHHHH
Q 012716 69 SLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR---FGKVNPAGINFYNYLID 145 (458)
Q Consensus 69 g~s~Wd~~~~~~~~i~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~---~g~~n~~~~~~y~~~i~ 145 (458)
|.+.|+.|....+. ..+..+.--+.++++=|+.++++|+..+=+.--|+.-..... ...... ....++++
T Consensus 8 Gk~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~ 80 (273)
T PF10566_consen 8 GKAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVD 80 (273)
T ss_dssp EEEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHH
T ss_pred ceEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc---cCHHHHHH
Confidence 34778777653221 112234446888999999999999999999999997332221 011222 33679999
Q ss_pred HHHHcCCcceEeecCCC------CchhHHH---hh---C------CC---CChHhHHHHHHHHHHHHHH
Q 012716 146 NLLLRGIEPFVTIYHHD------FPQQLEE---KY---G------SW---LSPQMQKEFVHLAKTCFEN 193 (458)
Q Consensus 146 ~l~~~gi~p~vtL~H~~------~P~~l~~---~~---g------gw---~~~~~~~~F~~ya~~~~~~ 193 (458)
..+++|+.+++-.+|-+ +=..+++ .| | +| .+.+.++.+.+-++.++++
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999998755 1111211 11 1 23 3456788888888887765
No 46
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=82.90 E-value=4.2 Score=40.96 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=34.8
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 160 (458)
-.+.||.+||+||+|++|+= -|-|+. | .++....|.++||-+++.|.-
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~-----n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK-----N------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS-------------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC-----C------HHHHHHHHHhCCCEEEEecCC
Confidence 57899999999999999973 233332 2 688999999999999999963
No 47
>smart00642 Aamy Alpha-amylase domain.
Probab=81.29 E-value=4.2 Score=37.16 Aligned_cols=64 Identities=17% Similarity=0.345 Sum_probs=44.6
Q ss_pred hhhchHHHHHHHHhcCCCeEEeccCCCcccc--C--CC----CCCCC--hhHHHHHHHHHHHHHHcCCcceEee
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILP--K--GR----FGKVN--PAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p--~--~~----~g~~n--~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.+....+-++-+++||++++-++--+..... . +. --.+| ....+-++++|++|+++||++++.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3566777788999999999998775554431 1 10 00122 1234568999999999999999976
No 48
>PLN02361 alpha-amylase
Probab=77.84 E-value=5.7 Score=41.67 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=48.8
Q ss_pred chhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCC-----CCh--hHHHHHHHHHHHHHHcCCcceEe--ecC
Q 012716 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGK-----VNP--AGINFYNYLIDNLLLRGIEPFVT--IYH 160 (458)
Q Consensus 94 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~-----~n~--~~~~~y~~~i~~l~~~gi~p~vt--L~H 160 (458)
.+|....+-++-+++||++++=++=.....-+.|- .. +|. ...+=++++|++|+++||++|+. ++|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY-~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGY-LPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCC-CcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 48999999999999999999988776554444431 11 111 12345899999999999999986 455
No 49
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=73.23 E-value=24 Score=35.47 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=61.7
Q ss_pred hhchHHHHHHHHhcCCCeEEecc---CCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhC
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSI---SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYG 172 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si---~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g 172 (458)
..||.+--++++++|+|..-+.= .-..+-| +-++-+.++-+.++..||++.+++. |..|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~---------~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP---------EYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST---------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH---------HHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 56889999999999999876432 2222222 2356677999999999999999997 7788654 4
Q ss_pred C-----CCChHhHHHHHHHHHHHHHHhCC
Q 012716 173 S-----WLSPQMQKEFVHLAKTCFENFGD 196 (458)
Q Consensus 173 g-----w~~~~~~~~F~~ya~~~~~~~gd 196 (458)
| -++++++.++.+=++.+.++.-|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 46789999999999999988766
No 50
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=72.24 E-value=10 Score=36.82 Aligned_cols=111 Identities=24% Similarity=0.319 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCcceEeecC--------------CCCchhHHH----------------hhCC----CCChH-----
Q 012716 138 NFYNYLIDNLLLRGIEPFVTIYH--------------HDFPQQLEE----------------KYGS----WLSPQ----- 178 (458)
Q Consensus 138 ~~y~~~i~~l~~~gi~p~vtL~H--------------~~~P~~l~~----------------~~gg----w~~~~----- 178 (458)
+.++.+|+.-+++|.++|+||-= ...|.|-.. +.+| ..+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 66899999999999999999852 111211000 0011 11333
Q ss_pred -hHHHHHHHHHHHHHHhCCC-----ccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 012716 179 -MQKEFVHLAKTCFENFGDR-----VKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSH 252 (458)
Q Consensus 179 -~~~~F~~ya~~~~~~~gd~-----v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAH 252 (458)
.++.| +..+..+||.. |++|..=|||.+...-- ..+||-. ..+.-+.....+.
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH--~dVHP~~----------------~t~~El~~r~i~~ 162 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTH--RDVHPEP----------------VTYDELRDRSIEY 162 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHT--TTT--S-------------------HHHHHHHHHHH
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccc--cccCCCC----------------CCHHHHHHHHHHH
Confidence 44444 66667777765 99999999999754211 1123322 2344556667777
Q ss_pred HHHHHHHHHhhhcCCCCe-EEEEe
Q 012716 253 AKAVKLYRKHFQEKQGGS-MGIVL 275 (458)
Q Consensus 253 a~av~~~r~~~~~~~~~~-IG~~~ 275 (458)
|+|+|.. .|.++ +|.+.
T Consensus 163 AkaiK~~------DP~a~v~GP~~ 180 (239)
T PF12891_consen 163 AKAIKAA------DPDAKVFGPVE 180 (239)
T ss_dssp HHHHHHH-------TTSEEEEEEE
T ss_pred HHHHHhh------CCCCeEeechh
Confidence 8876643 36776 46553
No 51
>PLN00196 alpha-amylase; Provisional
Probab=70.18 E-value=8.4 Score=40.77 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=47.0
Q ss_pred hhhchHHHHHHHHhcCCCeEEeccCCCccccCCC-C---CCCCh---hHHHHHHHHHHHHHHcCCcceEe--ecC
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR-F---GKVNP---AGINFYNYLIDNLLLRGIEPFVT--IYH 160 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~-~---g~~n~---~~~~~y~~~i~~l~~~gi~p~vt--L~H 160 (458)
+|....+.++-+++||++++=++=.....-+.|- . -.+|. ...+=++++|+++.++||++|+. ++|
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 4666789999999999999998865554433331 0 11221 12345899999999999999997 556
No 52
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=69.47 E-value=9.3 Score=37.18 Aligned_cols=59 Identities=22% Similarity=0.417 Sum_probs=41.2
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCC-------C--CChhHHHHHHHHHHHHHHcCCcceEeec
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFG-------K--VNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g-------~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 159 (458)
..+-++-+|+||++++-++=-+.. |.+..| . ......+=++++|++|.++||++|+.+-
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFES--PNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EES--SSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceeccccccc--ccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 356689999999999998864442 111011 1 1223466689999999999999999863
No 53
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=68.18 E-value=25 Score=34.64 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC-CCCc
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFP 164 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P 164 (458)
.+|++.+.+.|++.+|+.++=|...-....+.=-++.++...++|..+++.|+++.+++-. |..|
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~ 139 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD 139 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC
Confidence 6799999999999999998666543332112223567889999999999999999998854 3344
No 54
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=66.29 E-value=14 Score=36.82 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=61.1
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChH
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQ 178 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 178 (458)
-+.|++++++.|++.+++.++=|...-...-+.--.+.++-..++|+.+++.|+++.+++-+|.-|. +.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 3569999999999999999966655443211333467788899999999999999999998776653 11
Q ss_pred hHHHHHHHHHHHHH
Q 012716 179 MQKEFVHLAKTCFE 192 (458)
Q Consensus 179 ~~~~F~~ya~~~~~ 192 (458)
.++.+.+.++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 24566777776644
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=64.76 E-value=22 Score=35.90 Aligned_cols=100 Identities=22% Similarity=0.419 Sum_probs=64.8
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCC-------CccccCCC--CCCC-ChhHHHHHHHHHHHHHHcCCcceEee----c--
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISW-------PRILPKGR--FGKV-NPAGINFYNYLIDNLLLRGIEPFVTI----Y-- 159 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W-------~ri~p~~~--~g~~-n~~~~~~y~~~i~~l~~~gi~p~vtL----~-- 159 (458)
-...++-++.|+++|+|++=+.+.+ |.++|... .|.. ...|.+....+|++++++||++..-+ -
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3457788999999999987665533 33344210 1111 11245668899999999999987543 1
Q ss_pred ---C--CCCchhHHHh-------h----CC--CCC---hHhHHHHHHHHHHHHHHhC
Q 012716 160 ---H--HDFPQQLEEK-------Y----GS--WLS---PQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 160 ---H--~~~P~~l~~~-------~----gg--w~~---~~~~~~F~~ya~~~~~~~g 195 (458)
| -..|.|+..+ + ++ |.| |++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1346664311 1 21 544 6899999999999999995
No 56
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=64.37 E-value=15 Score=37.89 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCC--CCCCChhHHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHHhhCCCCC
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLS 176 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~ 176 (458)
+|.++.|+++|++ |+||.-..+-++-- -|+.. ..+-+.+.|+.+++.|+..+ +.|. +++|.
T Consensus 99 ~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg----------- 162 (374)
T PRK05799 99 EEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN----------- 162 (374)
T ss_pred HHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC-----------
Confidence 5889999999999 55554444433310 13221 24557788999999999744 4442 45552
Q ss_pred hHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccc
Q 012716 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLT 211 (458)
Q Consensus 177 ~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 211 (458)
++.+.|.+-.+.+.+.=-+.|..+...-+|+...
T Consensus 163 -qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 163 -QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 2344455555555433225565555445777543
No 57
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=63.80 E-value=18 Score=37.13 Aligned_cols=85 Identities=11% Similarity=-0.006 Sum_probs=62.3
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC-CCCchhHHHhhCCCCCh
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFPQQLEEKYGSWLSP 177 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 177 (458)
=.+|++.+.+.|++.+.+.++=|...-...-+.--++.++.+.++|+.++++|+++.+++.. |..|. .|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~-- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV-- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC--
Confidence 57999999999999999998777665543223445678899999999999999999877754 55552 2322
Q ss_pred HhHHHHHHHHHHHHH
Q 012716 178 QMQKEFVHLAKTCFE 192 (458)
Q Consensus 178 ~~~~~F~~ya~~~~~ 192 (458)
.++.+.++++.+.+
T Consensus 195 -~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 -PPSKVAYVAKELYD 208 (347)
T ss_pred -CHHHHHHHHHHHHH
Confidence 36666677776644
No 58
>PLN02784 alpha-amylase
Probab=63.65 E-value=18 Score=41.49 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=49.0
Q ss_pred chhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCC-----CCh--hHHHHHHHHHHHHHHcCCcceEe--ecC
Q 012716 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGK-----VNP--AGINFYNYLIDNLLLRGIEPFVT--IYH 160 (458)
Q Consensus 94 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~-----~n~--~~~~~y~~~i~~l~~~gi~p~vt--L~H 160 (458)
.+|....+.++-+++||++++=++=.-...-+.|. .. +|. ...+=++.+|++|.++||++|+. ++|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY-~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGY-MPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCc-CcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 57889999999999999999988776554444441 11 121 12455899999999999999997 445
No 59
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=63.34 E-value=18 Score=34.97 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 161 (458)
+++++.+++.|++.+|++++-+.+.-....+.=.+..++...+.|+.+++.|+++.+.+...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 138 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA 138 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 89999999999999999998774221110011122346678899999999999999998543
No 60
>PRK12313 glycogen branching enzyme; Provisional
Probab=63.02 E-value=26 Score=38.93 Aligned_cols=93 Identities=16% Similarity=0.338 Sum_probs=59.1
Q ss_pred hhchHHH-HHHHHhcCCCeEEeccC--------C-------CccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEe--
Q 012716 96 YHRFLED-IGIMHSLGVNSYRFSIS--------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT-- 157 (458)
Q Consensus 96 y~ry~eD-i~l~k~lG~~~~R~si~--------W-------~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-- 157 (458)
|.-..+. |+-+|+||++++=+.=- | -.|.|. -|. .+=++++|++|.++||++|+.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~--~Gt-----~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR--YGT-----PEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC--CCC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 4445567 49999999999975432 2 112222 133 345899999999999999998
Q ss_pred ecCCCCch----hHH--------H---h-hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 012716 158 IYHHDFPQ----QLE--------E---K-YGSW-------LSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 158 L~H~~~P~----~l~--------~---~-~ggw-------~~~~~~~~F~~ya~~~~~~~g 195 (458)
..|..... ++. + . +..| .++++.+.+.+-++.-+++||
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44642110 110 0 0 0123 467888888888888888876
No 61
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=61.94 E-value=9.3 Score=37.33 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.+|++.+.+.|++.+|+.++.+.+.-...-+.--+++++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 78999999999999999998887643321133345678889999999999999877655
No 62
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=61.42 E-value=32 Score=30.19 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCeEEeccC--CC-ccccCCCCCC--CChhHHHHHHHHHHHHHHcCCcceEeecC
Q 012716 101 EDIGIMHSLGVNSYRFSIS--WP-RILPKGRFGK--VNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (458)
Q Consensus 101 eDi~l~k~lG~~~~R~si~--W~-ri~p~~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 160 (458)
+=++.+|++|+|+.-+... +- --.|+.. |. +..+ -+...++|++|+++||++++=+.+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~-~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKV-GPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCC-CcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 3468999999999998433 11 1133331 21 2223 377899999999999999986643
No 63
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=61.38 E-value=31 Score=35.16 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHh
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQM 179 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 179 (458)
..-|++|.+.|++-+=.|+ +.|++ -+...++.+.++++.+.+.|+++||... |+-|.. -|| +.+.
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~-S~~~ 83 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNI-SLDN 83 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCC-ChHH
Confidence 3447899999998665554 34443 2335788999999999999999999995 887765 466 4455
Q ss_pred HHHHHHH
Q 012716 180 QKEFVHL 186 (458)
Q Consensus 180 ~~~F~~y 186 (458)
++.|.+.
T Consensus 84 l~~f~e~ 90 (360)
T COG3589 84 LSRFQEL 90 (360)
T ss_pred HHHHHHh
Confidence 6666655
No 64
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=61.23 E-value=33 Score=37.43 Aligned_cols=94 Identities=15% Similarity=0.362 Sum_probs=57.1
Q ss_pred hhchHHHHHHHHhcCCCeEEeccC--------CC-----ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee--cC
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSIS--------WP-----RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI--YH 160 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~--------W~-----ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H 160 (458)
|.-..+-++-+|+||++++-+.=- |- -..|++.-|. .+=++++|++|.++||++|+.+ .|
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~-----~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGG-----PDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCC-----HHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 555667789999999999876431 21 0011111133 3458999999999999999974 45
Q ss_pred CC---------CchhHHHh-hCCC------CCh---HhHHHHHHHHHHHHHHhC
Q 012716 161 HD---------FPQQLEEK-YGSW------LSP---QMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 161 ~~---------~P~~l~~~-~ggw------~~~---~~~~~F~~ya~~~~~~~g 195 (458)
.. -| |+... ..+| .++ ++.+.+.+-++.-++.||
T Consensus 185 ~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 185 FGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 42 12 22211 1233 234 666777776766666665
No 65
>PRK05402 glycogen branching enzyme; Provisional
Probab=61.10 E-value=42 Score=38.05 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=57.9
Q ss_pred hhchHHHH-HHHHhcCCCeEEeccCCC---------------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee-
Q 012716 96 YHRFLEDI-GIMHSLGVNSYRFSISWP---------------RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI- 158 (458)
Q Consensus 96 y~ry~eDi-~l~k~lG~~~~R~si~W~---------------ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL- 158 (458)
|.-..+.+ +-+|+||++++=+.=-.. .|.|. -|. .+=++++|++|.++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~--~Gt-----~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR--FGT-----PDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc--cCC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 33344453 788999999987654221 12222 133 3458999999999999999984
Q ss_pred -cCCCCc-----------hhHHH-----hhCC-------CCChHhHHHHHHHHHHHHHHhC
Q 012716 159 -YHHDFP-----------QQLEE-----KYGS-------WLSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 159 -~H~~~P-----------~~l~~-----~~gg-------w~~~~~~~~F~~ya~~~~~~~g 195 (458)
.|+... .+... .+.. +.++++.+.+.+-++.-+++||
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 465211 11110 0112 3467888888888888888776
No 66
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.02 E-value=45 Score=35.64 Aligned_cols=112 Identities=21% Similarity=0.401 Sum_probs=69.6
Q ss_pred hhchHHHHHHHHhcCCCeEEec------------------------------cCCCccccCCC-CCCCChhH----HHHH
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFS------------------------------ISWPRILPKGR-FGKVNPAG----INFY 140 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~s------------------------------i~W~ri~p~~~-~g~~n~~~----~~~y 140 (458)
|.+|+..|+.|+=.|+|..=.. +.|.|.---.. .|....+. +--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6899999999999999965322 23444421111 23333222 1123
Q ss_pred HHHHHHHHHcCCcceEeecCCCCchhHHHhh--------CCCC---------------ChHhHHHHHHHHHHHHHHhCCC
Q 012716 141 NYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY--------GSWL---------------SPQMQKEFVHLAKTCFENFGDR 197 (458)
Q Consensus 141 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw~---------------~~~~~~~F~~ya~~~~~~~gd~ 197 (458)
+++|+.+++-||+|++--+---.|..|..-+ +-|. ++-+++-=..|.+...+.||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999877666888876432 2232 2234444455666778889963
Q ss_pred ccEEE--eccCC
Q 012716 198 VKYWA--TLNEP 207 (458)
Q Consensus 198 v~~w~--t~NEp 207 (458)
-..+- ||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 22222 88884
No 67
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=60.64 E-value=22 Score=35.54 Aligned_cols=85 Identities=8% Similarity=0.065 Sum_probs=61.5
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC-CCCchhHHHhhCCCCCh
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFPQQLEEKYGSWLSP 177 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 177 (458)
-.+|+++..+.|++.+|+.++=|...-...-+.--++.++-..++|+.++++|+++.+++.. |..|. .|..+
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~- 153 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP- 153 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC-
Confidence 48999999999999999998666543222123334567888999999999999999887764 55551 34333
Q ss_pred HhHHHHHHHHHHHHH
Q 012716 178 QMQKEFVHLAKTCFE 192 (458)
Q Consensus 178 ~~~~~F~~ya~~~~~ 192 (458)
.+.+.++++.+.+
T Consensus 154 --~~~~~~~~~~~~~ 166 (287)
T PRK05692 154 --PEAVADVAERLFA 166 (287)
T ss_pred --HHHHHHHHHHHHH
Confidence 6677777777754
No 68
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=60.26 E-value=43 Score=33.57 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=71.7
Q ss_pred hHHHHHHHHhcCC--CeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCC---chhHH-----
Q 012716 99 FLEDIGIMHSLGV--NSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDF---PQQLE----- 168 (458)
Q Consensus 99 y~eDi~l~k~lG~--~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~----- 168 (458)
..+-++.+++.|+ +++=+.+.|..-. + +=.+|.+-..--.++|+.|+++|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g-~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--G-DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--C-ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 5666788888885 5777777886432 2 12345444444679999999999998887653211 11111
Q ss_pred ----HhhC----------C------CCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCc
Q 012716 169 ----EKYG----------S------WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (458)
Q Consensus 169 ----~~~g----------g------w~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~ 208 (458)
+.-| | ++||++.+.|.+..+.++...|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 68899999999999988877765 34788999996
No 69
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=60.11 E-value=35 Score=34.21 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=50.8
Q ss_pred HHHHhcCCCeEEeccC--CCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCC------
Q 012716 104 GIMHSLGVNSYRFSIS--WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWL------ 175 (458)
Q Consensus 104 ~l~k~lG~~~~R~si~--W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~------ 175 (458)
+.+++.|++++-++.- -..-.|.- .|.............|..|+++|++++|.+ |||.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w-~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~ 84 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW-GGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLAT 84 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC-CCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCcccc
Confidence 5677889998876643 22222221 121110112345678999999999999988 5554
Q ss_pred ChHhHHHHHHHHHHHHHHhCC
Q 012716 176 SPQMQKEFVHLAKTCFENFGD 196 (458)
Q Consensus 176 ~~~~~~~F~~ya~~~~~~~gd 196 (458)
+...++.|++....+.+.|+=
T Consensus 85 ~~~~~~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 85 SCTSADQLAAAYQKVIDAYGL 105 (294)
T ss_pred CcccHHHHHHHHHHHHHHhCC
Confidence 346788888888888888863
No 70
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=59.15 E-value=17 Score=38.87 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=46.2
Q ss_pred chhhchHHHHHHHHhcCCCeEEeccCCCcc--------ccCCC--------CCCCChh--HHHHHHHHHHHHHHcCCcce
Q 012716 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRI--------LPKGR--------FGKVNPA--GINFYNYLIDNLLLRGIEPF 155 (458)
Q Consensus 94 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri--------~p~~~--------~g~~n~~--~~~~y~~~i~~l~~~gi~p~ 155 (458)
|.|.-..+-++-+++||++++=++=...-. -|... .|.+|.. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 556667788999999999999887644432 11110 0122221 34558999999999999999
Q ss_pred Eee--cCC
Q 012716 156 VTI--YHH 161 (458)
Q Consensus 156 vtL--~H~ 161 (458)
+.+ .|-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 974 563
No 71
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=57.94 E-value=64 Score=32.24 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=67.7
Q ss_pred hHHHHHHHHhcC--CCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC---CCchhHHHh---
Q 012716 99 FLEDIGIMHSLG--VNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK--- 170 (458)
Q Consensus 99 y~eDi~l~k~lG--~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~--- 170 (458)
.++-++.+++.| ++++=+.+.|.+-.-.+ +=.+|++..---..+|+.|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~-~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWC-DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcce-eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 567789999999 56677888898532211 123454444446799999999999988876533 223211100
Q ss_pred ----------h--------CC---CCChHhHHHHHHHHHHHHHHhCCCccEEEeccCC
Q 012716 171 ----------Y--------GS---WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEP 207 (458)
Q Consensus 171 ----------~--------gg---w~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp 207 (458)
+ ++ +.||+..+.|.+..+.+.+ .|- --+|+=+||+
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gi-d~~~~D~~e~ 160 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGV-DCFKTDFGER 160 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCC-cEEecCCCCC
Confidence 0 11 6788999999887776554 442 1356668887
No 72
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=54.11 E-value=7.7 Score=31.31 Aligned_cols=19 Identities=42% Similarity=0.775 Sum_probs=13.8
Q ss_pred HHHHhCC--CccEEEeccC-Cc
Q 012716 190 CFENFGD--RVKYWATLNE-PN 208 (458)
Q Consensus 190 ~~~~~gd--~v~~w~t~NE-p~ 208 (458)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567775 7999999999 76
No 73
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=53.78 E-value=18 Score=39.41 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=40.7
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCCCccccC-CC--C--CCCCh--hHHHHHHHHHHHHHHcCCcceEee
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPK-GR--F--GKVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~-~~--~--g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
+.-..+-++-+++||++++=++=-...-.-. |. . -.+|+ ...+=++++|++|.++||++|+.+
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4446677899999999998775433221100 10 0 01111 134568999999999999999975
No 74
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=53.54 E-value=16 Score=37.64 Aligned_cols=61 Identities=16% Similarity=0.033 Sum_probs=47.8
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 159 (458)
.++|++.+.+.|++.+|++++-|.+.-...-+.-..+.++-..+.|..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4899999999999999999988776543211223345678889999999999999888774
No 75
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.35 E-value=40 Score=37.30 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=34.6
Q ss_pred hhchHHH-----HHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC
Q 012716 96 YHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (458)
Q Consensus 96 y~ry~eD-----i~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 160 (458)
|.+|.+| ++..++.|++.+|+..+.+.+ +-....|+.+++.|....+++.+
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 6666666 999999999999999755443 22345566666666665555543
No 76
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=52.97 E-value=26 Score=39.37 Aligned_cols=56 Identities=27% Similarity=0.410 Sum_probs=39.6
Q ss_pred HHHHHhcCCCeEE----eccCCCccccCC-CC--------------CC--CCh---hHHHHHHHHHHHHHHcCCcceEee
Q 012716 103 IGIMHSLGVNSYR----FSISWPRILPKG-RF--------------GK--VNP---AGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 103 i~l~k~lG~~~~R----~si~W~ri~p~~-~~--------------g~--~n~---~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
|+-+|+||++++. +++.+.+...+. .. |. .|. ..+.=+++||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999999999999 345555554321 00 11 122 246669999999999999999874
No 77
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.38 E-value=41 Score=33.31 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC-CCCchhHHHhhCCCCChH
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFPQQLEEKYGSWLSPQ 178 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~~ 178 (458)
++|++.+.+.|++.+++.++=|...-...-+.--++.++...+.++.++++|+++.+++.. |+.|. .|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC---
Confidence 6899999999999999998766543332112333567888999999999999999988763 55551 3322
Q ss_pred hHHHHHHHHHHHHH
Q 012716 179 MQKEFVHLAKTCFE 192 (458)
Q Consensus 179 ~~~~F~~ya~~~~~ 192 (458)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 36666777777654
No 78
>PRK14706 glycogen branching enzyme; Provisional
Probab=52.30 E-value=44 Score=37.31 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=52.2
Q ss_pred HHHHhcCCCeEEeccCCCccccCCCC-C--C-----CC--hhHHHHHHHHHHHHHHcCCcceEee--cCCC---------
Q 012716 104 GIMHSLGVNSYRFSISWPRILPKGRF-G--K-----VN--PAGINFYNYLIDNLLLRGIEPFVTI--YHHD--------- 162 (458)
Q Consensus 104 ~l~k~lG~~~~R~si~W~ri~p~~~~-g--~-----~n--~~~~~~y~~~i~~l~~~gi~p~vtL--~H~~--------- 162 (458)
+-+|+||++++-+.=-= -.|.... | . ++ ....+=++.+|++|.++||++|+.+ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~--e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVM--EHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchh--cCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 66899999998754210 0111100 0 0 11 0123448999999999999999874 3532
Q ss_pred --Cchh-HHHhhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 012716 163 --FPQQ-LEEKYGS----W-------LSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 163 --~P~~-l~~~~gg----w-------~~~~~~~~F~~ya~~~~~~~g 195 (458)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 257888888888888888886
No 79
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=51.78 E-value=36 Score=35.13 Aligned_cols=59 Identities=19% Similarity=0.085 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
++|++.+.+.|++.+|+.++-|.+.-...-+.--.+.++-..+.|+.++++|+++.+++
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 79999999999999999998776533321122234678888999999999999977654
No 80
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=51.65 E-value=22 Score=38.97 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=41.4
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCCCccccCCCCC-------CCCh--hHHHHHHHHHHHHHHcCCcceEee
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
+.-..+.++-+++||++++=++=-+.. |....| .+|+ ...+-++++|+++.++||++|+.+
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 455668899999999999987654321 111001 0111 134568999999999999999875
No 81
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=50.39 E-value=47 Score=35.64 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=40.3
Q ss_pred hhchHHH-----HHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012716 96 YHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (458)
Q Consensus 96 y~ry~eD-----i~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 164 (458)
|..|.+| ++.+++.|++.+|+..+-+.+ +-....|+.+++.|+.+..++.+-..|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 6667888 899999999999999866543 224566777788888777777653334
No 82
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=50.24 E-value=1e+02 Score=31.14 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCC-eEEecc-CCC-ccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCC
Q 012716 100 LEDIGIMHSLGVN-SYRFSI-SWP-RILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWL 175 (458)
Q Consensus 100 ~eDi~l~k~lG~~-~~R~si-~W~-ri~p~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 175 (458)
+|.+++|+++|++ .+=+++ +-+ ++.-..- .| .+ .+-+.+.++.++++||.+.+.+. +.+| +..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCC
Confidence 6889999999988 455555 211 1221100 12 22 35678999999999999766653 3444 222
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccccccccccccCC
Q 012716 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYPP 222 (458)
Q Consensus 176 ~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~P 222 (458)
..+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 34678888888887765 45888877777677765444466676654
No 83
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=49.98 E-value=93 Score=34.55 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=59.3
Q ss_pred hhchHHHH-HHHHhcCCCeEEe-ccCCCcccc-CCC--CC--CCC--hhHHHHHHHHHHHHHHcCCcceEeec--CCC--
Q 012716 96 YHRFLEDI-GIMHSLGVNSYRF-SISWPRILP-KGR--FG--KVN--PAGINFYNYLIDNLLLRGIEPFVTIY--HHD-- 162 (458)
Q Consensus 96 y~ry~eDi-~l~k~lG~~~~R~-si~W~ri~p-~~~--~g--~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~-- 162 (458)
|.-..+.+ +-+|+||++++=+ .|..+.-.. .|- .+ .++ ....+=++++|++|.++||++|+.+- |..
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 34445564 8899999999988 333221000 010 00 011 11234588999999999999999743 542
Q ss_pred ---------CchhHHH-----hhCCC-------CChHhHHHHHHHHHHHHHHhC
Q 012716 163 ---------FPQQLEE-----KYGSW-------LSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 163 ---------~P~~l~~-----~~ggw-------~~~~~~~~F~~ya~~~~~~~g 195 (458)
.|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111110 00112 457888999999998888886
No 84
>PRK14705 glycogen branching enzyme; Provisional
Probab=49.24 E-value=74 Score=38.22 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=55.4
Q ss_pred HHHHHhcCCCeEEecc--------CCCccccCC------CCCCCChhHHHHHHHHHHHHHHcCCcceEee--cCCCCchh
Q 012716 103 IGIMHSLGVNSYRFSI--------SWPRILPKG------RFGKVNPAGINFYNYLIDNLLLRGIEPFVTI--YHHDFPQQ 166 (458)
Q Consensus 103 i~l~k~lG~~~~R~si--------~W~ri~p~~------~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~~~P~~ 166 (458)
|+-+|+||++++-+.= +|- -.|.+ .-|. .+=++.+|++|.++||.+|+.+ .|+..=.|
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 6899999999987542 231 11111 0133 3448999999999999999974 35421111
Q ss_pred HHHhh----------------CC-------CCChHhHHHHHHHHHHHHHHhC
Q 012716 167 LEEKY----------------GS-------WLSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 167 l~~~~----------------gg-------w~~~~~~~~F~~ya~~~~~~~g 195 (458)
....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11010 11 3457888888888888888886
No 85
>PRK09505 malS alpha-amylase; Reviewed
Probab=49.01 E-value=31 Score=38.83 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=43.1
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccc-----------cC-CCCC-------CCCh--hHHHHHHHHHHHHHHcCCcceEe
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRIL-----------PK-GRFG-------KVNP--AGINFYNYLIDNLLLRGIEPFVT 157 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~-----------p~-~~~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vt 157 (458)
..+-++-+++||++++=++=-...+. |. +..| .+|. ...+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668999999999999875544431 10 0001 1222 24566999999999999999997
Q ss_pred e--cCCC
Q 012716 158 I--YHHD 162 (458)
Q Consensus 158 L--~H~~ 162 (458)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 4 4643
No 86
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=48.99 E-value=47 Score=34.47 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
++|++.+.+.|++.+|++++-|.+.-...-+.--++.++-..+.|+.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 78999999999999999998777643321133345678889999999999999988874
No 87
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.25 E-value=89 Score=30.84 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=48.2
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChH
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQ 178 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 178 (458)
-++|+++..+.|++.+|+++..+. ++--.+.|+.+++.|+++.+++.--+ ++ +-
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~~---~~ 146 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG---------SP---VH 146 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC---------CC---CC
Confidence 578999999999999999876554 34467889999999999887663101 12 22
Q ss_pred hHHHHHHHHHHHHH
Q 012716 179 MQKEFVHLAKTCFE 192 (458)
Q Consensus 179 ~~~~F~~ya~~~~~ 192 (458)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (275)
T cd07937 147 TLEYYVKLAKELED 160 (275)
T ss_pred CHHHHHHHHHHHHH
Confidence 35556666666544
No 88
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=48.06 E-value=72 Score=33.30 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=39.3
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.|++||++++++|++.|=+.|- -+ ...+. +....+++.+.+.|.+.++.+
T Consensus 18 dw~~di~~A~~~GIDgFaLNig----~~----d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG----SS----DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc----cC----CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 4899999999999999998885 11 22333 446788899999998888776
No 89
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=47.55 E-value=27 Score=39.39 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=35.4
Q ss_pred HHHHHhcCCCeEEeccCCCcccc-----------CCC----CCCCCh-----hHHHHHHHHHHHHHHcCCcceEee
Q 012716 103 IGIMHSLGVNSYRFSISWPRILP-----------KGR----FGKVNP-----AGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~p-----------~~~----~g~~n~-----~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
|+-+|+||++++-++=-=.-... .|- --.++. ..++=+++||++|.++||++|+.+
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 78999999999876542111100 010 001111 124558999999999999999974
No 90
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=47.02 E-value=79 Score=32.28 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCcceEeecCCCCc--------hhHHH---h----------h--------C---CCCChHhHHHHHHHHH
Q 012716 141 NYLIDNLLLRGIEPFVTIYHHDFP--------QQLEE---K----------Y--------G---SWLSPQMQKEFVHLAK 188 (458)
Q Consensus 141 ~~~i~~l~~~gi~p~vtL~H~~~P--------~~l~~---~----------~--------g---gw~~~~~~~~F~~ya~ 188 (458)
+++|+.|+++|++.++.+.-+-.+ .+-+. . | + -++|++..++|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 789999999999999887654332 22110 0 0 1 2688999999988877
Q ss_pred HHHHHhCCCccEEEeccCCcc
Q 012716 189 TCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 189 ~~~~~~gd~v~~w~t~NEp~~ 209 (458)
.++...|- .-+|+=+|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 77666554 357889999964
No 91
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=46.78 E-value=36 Score=38.64 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=57.3
Q ss_pred hhhchH-HHHHHHHhcCCCeEEeccCCCccc--cCCC--CC--CC--ChhHHHHHHHHHHHHHHcCCcceEeecC--CCC
Q 012716 95 HYHRFL-EDIGIMHSLGVNSYRFSISWPRIL--PKGR--FG--KV--NPAGINFYNYLIDNLLLRGIEPFVTIYH--HDF 163 (458)
Q Consensus 95 ~y~ry~-eDi~l~k~lG~~~~R~si~W~ri~--p~~~--~g--~~--n~~~~~~y~~~i~~l~~~gi~p~vtL~H--~~~ 163 (458)
.|.-.. +-++-+|+||++++-+.=-...-. ..|. .+ .+ .....+=++++|++|.++||++|+.+-+ ..-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 344433 348999999999998764322110 0010 00 00 0111344889999999999999998653 211
Q ss_pred -------------chhHHHhhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 012716 164 -------------PQQLEEKYGS----W-------LSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 164 -------------P~~l~~~~gg----w-------~~~~~~~~F~~ya~~~~~~~g 195 (458)
+.|+.....| | .++++...+.+=++.-+++|+
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1232211011 2 245677777777777777774
No 92
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=46.18 E-value=27 Score=38.05 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=39.4
Q ss_pred hchHHHHHHHHhcCCCeEEeccCCCccccCCC--CC-------CCCh--hHHHHHHHHHHHHHHcCCcceEee
Q 012716 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGR--FG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~--~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.-..+-++-+++||++++=++=-. +.+. .| .+|+ ...+=++++|+++.++||++|+.+
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~----~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFF----QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCc----CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 335666899999999998766322 2210 01 1222 124568999999999999999974
No 93
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.91 E-value=1e+02 Score=31.44 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec--CCCCchhH
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--HHDFPQQL 167 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~~P~~l 167 (458)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|++..+++. |...|..+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 689999999999999988754433 1246889999999999988773 44444443
No 94
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.86 E-value=1.4e+02 Score=30.17 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCC--CeEEeccCCCccccCC-CCC--CCChhHHHHHHHHHHHHHHcCCcceEeecCC---CCchhHH--H
Q 012716 100 LEDIGIMHSLGV--NSYRFSISWPRILPKG-RFG--KVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLE--E 169 (458)
Q Consensus 100 ~eDi~l~k~lG~--~~~R~si~W~ri~p~~-~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~--~ 169 (458)
.+-++.+++.|+ +++=+++.|......+ ..| .+|.+-.---+++|+.|+++|++.++.++-+ +.|..-+ +
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 444556666554 4566666674432211 011 2333333334689999999999999887644 3343211 1
Q ss_pred h-h-------------------C---CCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCccc
Q 012716 170 K-Y-------------------G---SWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (458)
Q Consensus 170 ~-~-------------------g---gw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~ 210 (458)
+ | + .++||+..+.|.+..+.+ ...|- --+|+=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gv-dg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGV-TGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCc-cEEEecCCCcccc
Confidence 0 0 1 257899999998877765 33332 2468899999754
No 95
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=45.55 E-value=1.5e+02 Score=30.34 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=61.7
Q ss_pred cCcchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHh
Q 012716 91 VADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (458)
Q Consensus 91 ~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 170 (458)
+|.=||+ |+==+ ...+.|+..+|+. + |.+-.+ +....+++.++++|+-.=+..+|-.+.+-+.++
T Consensus 78 VaDiHf~-~rla~-~~~~~g~~k~RIN---------P--GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~k 142 (361)
T COG0821 78 VADIHFD-YRLAL-EAAECGVDKVRIN---------P--GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEK 142 (361)
T ss_pred EEEeecc-HHHHH-HhhhcCcceEEEC---------C--cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHH
Confidence 4555666 54433 3446678888863 3 444322 368999999999999999999999999999999
Q ss_pred hCCCCChHhHHHHHHHHHHH
Q 012716 171 YGSWLSPQMQKEFVHLAKTC 190 (458)
Q Consensus 171 ~ggw~~~~~~~~F~~ya~~~ 190 (458)
|++-+.+..++--.++|+.+
T Consensus 143 y~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 143 YGGPTPEALVESALEHAELL 162 (361)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 98776666666666666655
No 96
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=45.10 E-value=86 Score=32.00 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCcceEeecCC-CCchhHHHh--hCCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccccc
Q 012716 141 NYLIDNLLLRGIEPFVTIYHH-DFPQQLEEK--YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDM 213 (458)
Q Consensus 141 ~~~i~~l~~~gi~p~vtL~H~-~~P~~l~~~--~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~ 213 (458)
+++++.|++.|++.++.+.-+ ..-...... +--|.|+++.+.|.+..+.+.+ .|-. -+|+=+|||.+++..
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~-~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLE-FVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCc-eeecCCCCcccccCC
Confidence 589999999999877765411 100000000 1237889999988776655433 3433 489999999987543
No 97
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=44.22 E-value=55 Score=32.24 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCeEEeccCCC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEe
Q 012716 100 LEDIGIMHSLGVNSYRFSISWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~-ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 157 (458)
+|.++.||++|++.+-++++-+ ++++.- .+.- ..+.+.+.++.++++||.+.++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i-~~~~---s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNI-ISTH---TYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhc-cCCC---CHHHHHHHHHHHHHcCCEEEEe
Confidence 7999999999999999999822 133331 1222 3466788999999999986544
No 98
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.10 E-value=1.1e+02 Score=31.11 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012716 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (458)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 164 (458)
.+.+|++|.++..|=+=|. |++ +-.+|..-.++.+++.++|++.||-=++-+--+|.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~-~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDE-PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCC-CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5889999999999999887 554 345899999999999999999999888877655543
No 99
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=43.72 E-value=74 Score=36.37 Aligned_cols=101 Identities=23% Similarity=0.362 Sum_probs=64.8
Q ss_pred cCCCeEEeccC-CCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC---CCCchhHH--Hh-h----------
Q 012716 109 LGVNSYRFSIS-WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH---HDFPQQLE--EK-Y---------- 171 (458)
Q Consensus 109 lG~~~~R~si~-W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~--~~-~---------- 171 (458)
+=++++++++. |.+ .-+ .=++|..-.---+.||+.|+++||+.++.+.. -|.|+.-+ ++ |
T Consensus 294 IP~d~~~lD~~~~~~--~~~-~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG-DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--ccc-ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 45779999996 886 222 12333333333459999999999999988764 23333211 11 0
Q ss_pred -----------CCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccccc
Q 012716 172 -----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDM 213 (458)
Q Consensus 172 -----------ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~ 213 (458)
--|+||+.+++|.+....-+..+|- .-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv-~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGV-DGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCc-cEEEccCCCCcccccc
Confidence 1278999999999744333444443 4689999999987544
No 100
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=43.66 E-value=42 Score=38.70 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=43.5
Q ss_pred hhchHHHHHHHHhcCCCeEEeccC---------------CCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee--
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSIS---------------WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI-- 158 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~---------------W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 158 (458)
+....+-++-+++||++++=+|=- +.+|-|.- | +.+=+++++++++++||++|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l--G-----t~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL--G-----GEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC--C-----CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 455788899999999999876543 33344432 2 34558999999999999999974
Q ss_pred cCC
Q 012716 159 YHH 161 (458)
Q Consensus 159 ~H~ 161 (458)
+|-
T Consensus 92 NH~ 94 (879)
T PRK14511 92 NHM 94 (879)
T ss_pred ccc
Confidence 453
No 101
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=43.44 E-value=38 Score=36.25 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=40.8
Q ss_pred hhchHHH-----HHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012716 96 YHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (458)
Q Consensus 96 y~ry~eD-----i~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 164 (458)
|..|.+| ++++++-|++.+|+.-.... ++--...|+.+++.|....+++.+=+.|
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 7778888 89999999999998653221 2334567778888888877777775555
No 102
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.41 E-value=1.1e+02 Score=31.05 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=49.5
Q ss_pred HHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012716 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (458)
Q Consensus 102 Di~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 164 (458)
+.+.+|++|.++..|=+=|. |++ +-.+|..-.++.+++.++|++.||-=++-+--+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~-~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDG-DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC-CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 46889999999999999887 554 346888889999999999999999988887665543
No 103
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.31 E-value=95 Score=31.87 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=43.7
Q ss_pred HHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
++.++++|.+++-+-+-|. |+. ...+|..-+++..++.++|.+.||.-++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~-~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE-DDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc-chHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999887 553 234678888999999999999999988854
No 104
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=41.73 E-value=58 Score=33.40 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCeEEecc-CCC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EeecCCCCc
Q 012716 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFP 164 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W~-ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P 164 (458)
++.++.|+++|++.+.+++ +-+ ++...- |+. ...+-+.+.|+.+++.|+.++ +.| =+.+|
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l--gR~--~~~~~~~~ai~~l~~~G~~~v~~dl-i~GlP 162 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL--GRQ--HSAKNIAPAIETALKSGIENISLDL-MYGLP 162 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh--CCC--CCHHHHHHHHHHHHHcCCCeEEEec-cCCCC
Confidence 6889999999999666655 232 222221 322 124557789999999999865 333 24555
No 105
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=41.73 E-value=14 Score=36.01 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=42.1
Q ss_pred HHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccccccccccccC
Q 012716 147 LLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYP 221 (458)
Q Consensus 147 l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~ 221 (458)
+.++.+.|+++|||||.= ..-+.+....+.++.+.+=|+.--.++-.+-.-|---....+.+.+||..-.++
T Consensus 77 ~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 77 LEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 344468999999999862 222455666677888777444433333221111222333355677899887763
No 106
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.57 E-value=91 Score=33.25 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=40.1
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 164 (458)
-++|++.+.+.|++.+|+.++-+.+. -....|+.+++.|+.+.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 36677999999999999998665541 14568889999999888877765556
No 107
>PRK03705 glycogen debranching enzyme; Provisional
Probab=41.56 E-value=54 Score=36.78 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=36.3
Q ss_pred HHHHHhcCCCeEEeccC-----------------C-------CccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 103 IGIMHSLGVNSYRFSIS-----------------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 103 i~l~k~lG~~~~R~si~-----------------W-------~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
|+-+|+||++++-++=- | -.+.|. -|.-....++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~--ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA--YASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc--cCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 89999999999876421 1 112222 122111235668999999999999999975
No 108
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=41.46 E-value=75 Score=30.46 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=43.7
Q ss_pred chhhchHHHHHHHHhcCCCeEEeccCCCccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEe-ecCCCCc
Q 012716 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVT-IYHHDFP 164 (458)
Q Consensus 94 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 164 (458)
++-.++++-|+++++||.+.+|+-..+. |... ........++..+++.+.+.+.||...+= +++++.|
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 3446677889999999999998644321 1110 01122344567788888899999987774 3445554
No 109
>PRK10785 maltodextrin glucosidase; Provisional
Probab=41.44 E-value=43 Score=37.00 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=39.2
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCC-CC-------CCCh--hHHHHHHHHHHHHHHcCCcceEee
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGR-FG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~-~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
-..+-++-+|+||++++=++=- ++.+. .| .+|+ ...+=++++|++|.++||++|+.+
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pi----f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPI----FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCc----ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3566789999999999887642 22221 00 1221 133558999999999999999975
No 110
>PRK12568 glycogen branching enzyme; Provisional
Probab=41.18 E-value=37 Score=38.45 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=57.4
Q ss_pred hhchHHH-HHHHHhcCCCeEEecc--------CCCc-----cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec--
Q 012716 96 YHRFLED-IGIMHSLGVNSYRFSI--------SWPR-----ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-- 159 (458)
Q Consensus 96 y~ry~eD-i~l~k~lG~~~~R~si--------~W~r-----i~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-- 159 (458)
|.-..+. |+-+|+||++++-+.= +|-= .-|++.-|. .+=++.+|++|.++||++|+.+-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGS-----PDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4444444 6899999999986542 3410 011111133 34589999999999999999753
Q ss_pred CCCC----------c-hhHH-H-h---hCC-------CCChHhHHHHHHHHHHHHHHhC
Q 012716 160 HHDF----------P-QQLE-E-K---YGS-------WLSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 160 H~~~----------P-~~l~-~-~---~gg-------w~~~~~~~~F~~ya~~~~~~~g 195 (458)
|+.- + .+-. + . +.. +.++++.+.+.+=+..-+++|+
T Consensus 343 H~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 343 HFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 1 0100 0 0 012 3457788888888888888876
No 111
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=41.15 E-value=99 Score=35.24 Aligned_cols=106 Identities=17% Similarity=0.283 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCC--eEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec---CCCCchh--------
Q 012716 100 LEDIGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---HHDFPQQ-------- 166 (458)
Q Consensus 100 ~eDi~l~k~lG~~--~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~-------- 166 (458)
++=++.+.++|+. ..=..|+|-.-..+ =.+|..+.....++++.|.++|++.++++. +-+...-
T Consensus 314 ~dvv~~~~~agiPld~~~~DiDyMd~ykD---FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~ 390 (805)
T KOG1065|consen 314 RDVVENYRAAGIPLDVIVIDIDYMDGYKD---FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAK 390 (805)
T ss_pred HHHHHHHHHcCCCcceeeeehhhhhcccc---eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhh
Confidence 3446777777776 55556666543333 346666666688999999999999999987 3222200
Q ss_pred -------------HHHhhCC------CCChHhHHHHHHHHHHHHHHhCCCcc---EEEeccCCccccc
Q 012716 167 -------------LEEKYGS------WLSPQMQKEFVHLAKTCFENFGDRVK---YWATLNEPNLLTD 212 (458)
Q Consensus 167 -------------l~~~~gg------w~~~~~~~~F~~ya~~~~~~~gd~v~---~w~t~NEp~~~~~ 212 (458)
+.+-..| ++|+.+++++.+ .+++|.+.|. +|+-+|||.-++.
T Consensus 391 ~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 391 DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred ceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 0000012 667766665554 5668888875 8999999976653
No 112
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.94 E-value=1.9e+02 Score=29.03 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCcceEeecCCC---CchhHH--Hh-h----------------C------CCCChHhHHHHHHHHHHHH
Q 012716 140 YNYLIDNLLLRGIEPFVTIYHHD---FPQQLE--EK-Y----------------G------SWLSPQMQKEFVHLAKTCF 191 (458)
Q Consensus 140 y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~--~~-~----------------g------gw~~~~~~~~F~~ya~~~~ 191 (458)
-++||+.|+++|++.++.++-+- .|..-+ ++ | + .++|++..+.|.+..+..+
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 46899999999999998776442 222111 00 0 0 1478899999988776555
Q ss_pred HHhCCCccEEEeccCCcc
Q 012716 192 ENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 192 ~~~gd~v~~w~t~NEp~~ 209 (458)
...|- .-+|+=+|||.+
T Consensus 155 ~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 155 LDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred hcCCC-cEEEecCCCCcc
Confidence 55544 347888999974
No 113
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=40.91 E-value=1.5e+02 Score=29.78 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCcceEeecCCC-----CchhHHHh------------------------hCCCCChHhHHHHHHHHHHH
Q 012716 140 YNYLIDNLLLRGIEPFVTIYHHD-----FPQQLEEK------------------------YGSWLSPQMQKEFVHLAKTC 190 (458)
Q Consensus 140 y~~~i~~l~~~gi~p~vtL~H~~-----~P~~l~~~------------------------~ggw~~~~~~~~F~~ya~~~ 190 (458)
-.++|+.|+++|++.++.+.-+- .|...+.. +-.|+||+..+.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 46899999999999887665331 12221110 01368999999999888877
Q ss_pred HHHhCCCccEEEeccCCccc
Q 012716 191 FENFGDRVKYWATLNEPNLL 210 (458)
Q Consensus 191 ~~~~gd~v~~w~t~NEp~~~ 210 (458)
....|-. -+|+=+|||..+
T Consensus 146 ~~~~gvd-g~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGVD-GIWLDMNEPSDF 164 (317)
T ss_pred hhcCCCc-eEEeeCCCCccH
Confidence 6555543 488899999643
No 114
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=40.57 E-value=39 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.007 Sum_probs=26.3
Q ss_pred HHHHHHHHH-cCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHH
Q 012716 141 NYLIDNLLL-RGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLA 187 (458)
Q Consensus 141 ~~~i~~l~~-~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya 187 (458)
+++++.|.+ +||+|.+|. ..|-.- .+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~L------ekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLL------EKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHH------HHHHHHHHHHHh
Confidence 577877775 799999887 466543 267788888873
No 115
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.45 E-value=96 Score=29.77 Aligned_cols=76 Identities=16% Similarity=0.326 Sum_probs=50.1
Q ss_pred hhhchHHHHHHHHhcCCCeEEe----------------------ccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRF----------------------SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGI 152 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~----------------------si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi 152 (458)
---.-+.-|+++|+||.+++.| ++ | +||.| .+|. +.+.+++.-+++.|+
T Consensus 133 ~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG---GIdl---~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 133 AIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG---GIDL---DNFEEIVQIALDAGV 203 (236)
T ss_pred ceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC---CccH---HhHHHHHHHHHHcCC
Confidence 3445678899999999999875 33 3 57775 4774 678999999999999
Q ss_pred cceEeecCCCCchhHHHhhCCCCChHhHHHH
Q 012716 153 EPFVTIYHHDFPQQLEEKYGSWLSPQMQKEF 183 (458)
Q Consensus 153 ~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F 183 (458)
+-++- |- +- ..-|+-.|=+.++-+...
T Consensus 204 ~kviP--HI-Ys-siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 204 EKVIP--HV-YS-SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred Ceecc--cc-ce-eccccccCCCCHHHHHHH
Confidence 87642 20 01 112332566666555443
No 116
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=39.82 E-value=30 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=25.6
Q ss_pred HHHHHHHH-HcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHH
Q 012716 141 NYLIDNLL-LRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLA 187 (458)
Q Consensus 141 ~~~i~~l~-~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya 187 (458)
+++++.|. .++|+|.+|.. .|-.- .+++.+.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~L------e~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQKL------EKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHHH------HHHCHHHHHHhh
Confidence 57888885 56999999884 56443 256677787773
No 117
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=39.60 E-value=1e+02 Score=32.82 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCeEEecc-CCCccccCCCCCCCChhHHHHHHHHHHHHHHcC-CcceEeecCCCCchhHHHhhCCCCCh
Q 012716 100 LEDIGIMHSLGVNSYRFSI-SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRG-IEPFVTIYHHDFPQQLEEKYGSWLSP 177 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~~~ 177 (458)
+|.+++|+++|+|-+.++| +-+.-.-.. -|+.. ..+-..+.|+.+++.| +.+.++|. +.+|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg------------ 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG------------ 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC------------
Confidence 6889999999999777777 332211111 13322 1244667899999999 55666664 45552
Q ss_pred HhHHHHHHHHHHHHHHhCCCccEEEeccCCcccccccccccccC
Q 012716 178 QMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYP 221 (458)
Q Consensus 178 ~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~ 221 (458)
++.+.|.+=.+.+.+-=-+.|..+...-||.......+..|..+
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12333444444444433367888888888886443333345443
No 118
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=37.94 E-value=1e+02 Score=30.78 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=55.2
Q ss_pred HHHHHhcCCCeEEeccCCCccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCC----chhHHHhhCCCCCh
Q 012716 103 IGIMHSLGVNSYRFSISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDF----PQQLEEKYGSWLSP 177 (458)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~p~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~~~~ggw~~~ 177 (458)
.+.+++-+-+.=-++..|-.|-|+|. .+.. ..++++.++++|+++++++..++- +.-+.. --.++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~ 85 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNP 85 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCH
Confidence 56666666666677888888888763 2322 358999999999999999976641 111111 12456
Q ss_pred HhHHHHHHHHHHHHHHhC
Q 012716 178 QMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 178 ~~~~~F~~ya~~~~~~~g 195 (458)
+..+.|++=+..+++++|
T Consensus 86 ~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 86 EARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 667777777766677664
No 119
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.63 E-value=1.8e+02 Score=28.24 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 159 (458)
.+|++.+++.|++.+|+.++.+.+. -..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~--------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD--------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH--------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6999999999999999988666431 246788999999999888873
No 120
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=37.60 E-value=1.6e+02 Score=29.88 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCcceEeecCCCC-----chhHHHh-------------h-----------CCCCChHhHHHHHHHHHHHH
Q 012716 141 NYLIDNLLLRGIEPFVTIYHHDF-----PQQLEEK-------------Y-----------GSWLSPQMQKEFVHLAKTCF 191 (458)
Q Consensus 141 ~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~-------------~-----------ggw~~~~~~~~F~~ya~~~~ 191 (458)
+.+|+.|+++|++.++.++-+-. |..-+.. | -.+.|++.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 57999999999998887764422 2221110 0 12688999999999888776
Q ss_pred HHhC-CCccEEEeccCCcccc
Q 012716 192 ENFG-DRVKYWATLNEPNLLT 211 (458)
Q Consensus 192 ~~~g-d~v~~w~t~NEp~~~~ 211 (458)
...+ +-+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 5433 2346889999998754
No 121
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=37.43 E-value=59 Score=37.30 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=43.4
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCCCcccc--CCC----CCCCCh--hHHHHHHHHHHHHHHcCCcceEee--cCC
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILP--KGR----FGKVNP--AGINFYNYLIDNLLLRGIEPFVTI--YHH 161 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W~ri~p--~~~----~g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL--~H~ 161 (458)
+....+-++-+++||++++=+|=-+.-.-. .|. -..+|+ .+.+=+++++++|+++||.+|+.+ +|.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 445788899999999999977654432100 010 001111 135568999999999999999974 564
No 122
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=37.18 E-value=1.3e+02 Score=29.74 Aligned_cols=72 Identities=14% Similarity=0.040 Sum_probs=52.5
Q ss_pred CcchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhH
Q 012716 92 ADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQL 167 (458)
Q Consensus 92 a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 167 (458)
+++......+-.+.+|++|++.+|.+..=+|--|.+..|.. + +.+..+-+.+.+.||..+.+.++-.....+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g-~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG-E---EGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcH-H---HHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 34556677788899999999999999866887776544422 4 446677777899999999888764444443
No 123
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.17 E-value=76 Score=30.87 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=18.7
Q ss_pred chHHHHHHHHhcCCCeEEeccC
Q 012716 98 RFLEDIGIMHSLGVNSYRFSIS 119 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~ 119 (458)
-|+|-+.+.|++||+.+-+||+
T Consensus 19 sW~erl~~AK~~GFDFvEmSvD 40 (287)
T COG3623 19 SWLERLALAKELGFDFVEMSVD 40 (287)
T ss_pred CHHHHHHHHHHcCCCeEEEecc
Confidence 4888999999999999988873
No 124
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=36.69 E-value=1.5e+02 Score=31.02 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=61.8
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCcc-----------ccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec-------
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRI-----------LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY------- 159 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri-----------~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~------- 159 (458)
...+-++.++++|++.+=+.=-|..- .|+. .++ +.| ...+++.+++.||++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~--~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP--KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT--TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh--hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccch
Confidence 45666799999999999999899653 2222 122 134 56899999999999755220
Q ss_pred ---CCCCchhHHHhh-----CC-------CCChHhHHHHHHHHHHHHHHhC-CCcc
Q 012716 160 ---HHDFPQQLEEKY-----GS-------WLSPQMQKEFVHLAKTCFENFG-DRVK 199 (458)
Q Consensus 160 ---H~~~P~~l~~~~-----gg-------w~~~~~~~~F~~ya~~~~~~~g-d~v~ 199 (458)
.-.+|.|+...- .| ..+|++.+...+-...+++.+| |.+|
T Consensus 133 S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK 188 (394)
T PF02065_consen 133 SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIK 188 (394)
T ss_dssp SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 124688864210 11 3578889988888888888887 4444
No 125
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=36.68 E-value=39 Score=40.69 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=39.2
Q ss_pred hhchH--HHHHHHHhcCCCeEEeccCCCccc-----cC------CC--C--CCCCh--h--HHHHHHHHHHHHHHcCCcc
Q 012716 96 YHRFL--EDIGIMHSLGVNSYRFSISWPRIL-----PK------GR--F--GKVNP--A--GINFYNYLIDNLLLRGIEP 154 (458)
Q Consensus 96 y~ry~--eDi~l~k~lG~~~~R~si~W~ri~-----p~------~~--~--g~~n~--~--~~~~y~~~i~~l~~~gi~p 154 (458)
|.... +.|+-+|+||++++=+.=-..... +. |. . -.++. . ..+=+++||++|.++||++
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~V 263 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAV 263 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEE
Confidence 44444 668899999999987653222110 00 00 0 00111 1 4556899999999999999
Q ss_pred eEee
Q 012716 155 FVTI 158 (458)
Q Consensus 155 ~vtL 158 (458)
|+.+
T Consensus 264 ILDv 267 (1221)
T PRK14510 264 ILDV 267 (1221)
T ss_pred EEEE
Confidence 9973
No 126
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=36.34 E-value=99 Score=30.72 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=48.2
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
-++|++.+.+.|++.+-+.++=|...-...-+.=-++.++.+.++|..++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 379999999999999998887666544421244456788999999999999999988888
No 127
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=36.11 E-value=1.1e+02 Score=29.48 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhC
Q 012716 136 GINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 136 ~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~g 195 (458)
..+...+.|..|+++|+++++++--+.....+ ....+++..+.|++-+..++++||
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 34567789999999999999999755543211 012455556666666666666665
No 128
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.20 E-value=76 Score=31.22 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHh
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQM 179 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 179 (458)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+-. + -.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~ 136 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YS 136 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CC
Confidence 5899999999999999987433 245578999999999999999886411 1 23
Q ss_pred HHHHHHHHHHHHH
Q 012716 180 QKEFVHLAKTCFE 192 (458)
Q Consensus 180 ~~~F~~ya~~~~~ 192 (458)
.+.+.++++.+.+
T Consensus 137 ~~~~~~~~~~~~~ 149 (266)
T cd07944 137 DEELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHHh
Confidence 5556667766644
No 129
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.16 E-value=1.3e+02 Score=30.16 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=44.9
Q ss_pred hHHHHHHHHhcCCCeEEecc----CCCccccCC-C-CCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhH
Q 012716 99 FLEDIGIMHSLGVNSYRFSI----SWPRILPKG-R-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQL 167 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si----~W~ri~p~~-~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 167 (458)
.++=|++|+.+|+|.+-+=+ .++. .|.- . .|.+.++- ++++++.++++||+++..+ |+|-.+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 77889999999999887643 3322 2221 1 36676644 7899999999999999877 567554
No 130
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=34.04 E-value=58 Score=32.11 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC
Q 012716 101 EDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (458)
Q Consensus 101 eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 161 (458)
.+++++++.|++.+|+.++=|...-...-|.--++.++...+.++.+++.|+++.++.-+|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 6899999999999999886554432211133335678889999999999999988876554
No 131
>PRK12677 xylose isomerase; Provisional
Probab=33.76 E-value=3.1e+02 Score=28.53 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=53.3
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHHhhCCCCCh
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLSP 177 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 177 (458)
..|-++.++++|++.+=+.. ..+.|-+ ....+--+..+++-+.+.+.||++. +|...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC---CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 67899999999999886632 3344443 1111111346778888889999966 56555555643 22788774
Q ss_pred --HhHHHHHHHHHHH---HHHhCC
Q 012716 178 --QMQKEFVHLAKTC---FENFGD 196 (458)
Q Consensus 178 --~~~~~F~~ya~~~---~~~~gd 196 (458)
+..+.-.++.+.+ +..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2223324444433 455654
No 132
>PLN02960 alpha-amylase
Probab=33.03 E-value=77 Score=36.61 Aligned_cols=94 Identities=12% Similarity=0.178 Sum_probs=58.5
Q ss_pred hhhchHHH-HHHHHhcCCCeEEeccC--------CC-------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 95 HYHRFLED-IGIMHSLGVNSYRFSIS--------WP-------RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 95 ~y~ry~eD-i~l~k~lG~~~~R~si~--------W~-------ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.|.-..+. |+-+|+||++++-+.=- |- .+.|. -|. .+=++.+|++|.++||++|+.+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~--yGt-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR--FGT-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc--cCC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 45556544 89999999999886521 11 11111 122 3448899999999999999986
Q ss_pred --cCCCC--ch-----------hHHH--h--hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 012716 159 --YHHDF--PQ-----------QLEE--K--YGSW-------LSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 159 --~H~~~--P~-----------~l~~--~--~ggw-------~~~~~~~~F~~ya~~~~~~~g 195 (458)
.|+.. +. ++.. . +..| .++++.+.+.+=++.-+++|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45321 11 1110 0 0112 346788888888888888876
No 133
>PLN03153 hypothetical protein; Provisional
Probab=32.88 E-value=47 Score=35.92 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=40.1
Q ss_pred HHHcC-CcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHH----HHHHHh--CCCccEEEeccCCcccccccccccc
Q 012716 147 LLLRG-IEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAK----TCFENF--GDRVKYWATLNEPNLLTDMAYIRGT 219 (458)
Q Consensus 147 l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~----~~~~~~--gd~v~~w~t~NEp~~~~~~gy~~g~ 219 (458)
+++.| ++|+|+||||+. | +--|.+-...+.++.|..=|+ .++++. +|+..-|..- +.+||..-.
T Consensus 327 ~les~p~~P~vSlHH~~~--~-~p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~~ 397 (537)
T PLN03153 327 LLSSHPIAPFVSIHHVEA--V-DPFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQV 397 (537)
T ss_pred HhhcCCCCCceeeeeccc--c-ccccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEEE
Confidence 45666 899999999987 1 111233344567777765442 223443 5655555543 677888766
Q ss_pred cCCC
Q 012716 220 YPPT 223 (458)
Q Consensus 220 ~~Pg 223 (458)
++-+
T Consensus 398 y~~~ 401 (537)
T PLN03153 398 FPSI 401 (537)
T ss_pred ecCC
Confidence 6443
No 134
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.85 E-value=43 Score=30.41 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=41.3
Q ss_pred hhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 156 (458)
.....++-+++++.+|++.+++...+-...+......--...++.++.+.+.+.+.|+++.+
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 46678899999999999999999764111111100111123456788888888899977554
No 135
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.72 E-value=95 Score=29.99 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=45.5
Q ss_pred eccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhC
Q 012716 116 FSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (458)
Q Consensus 116 ~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~g 195 (458)
+.+.|..+.++|. ..... .......+++.++++|+++++.+..++...... --.+++..+.|++=+-..++++|
T Consensus 26 v~~~f~~i~~~G~-l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGT-LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCe-EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 3445666666552 11111 123467889999999999999997665443211 12467777777776666666664
No 136
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=32.11 E-value=2.2e+02 Score=25.44 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=38.3
Q ss_pred chHHHHHHHHhcCCCeEEeccC-CCccccCCCCCCCChhHHHHHHHHHHHHHHcC-CcceEee
Q 012716 98 RFLEDIGIMHSLGVNSYRFSIS-WPRILPKGRFGKVNPAGINFYNYLIDNLLLRG-IEPFVTI 158 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~-W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL 158 (458)
.-++.++.|+++|++.+.+|++ ++.-.-+......+ .+.+.+.|+.+++.| +.+.+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 3478899999999999999995 54321110011122 367888999999999 6554433
No 137
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=31.82 E-value=1e+02 Score=30.86 Aligned_cols=63 Identities=21% Similarity=0.369 Sum_probs=45.6
Q ss_pred hHHHHHHHHhcCCCeEEeccC----CCc---cccCC-----------CCCCCChhHHHHHHHHHHHHHHcCCcceEeecC
Q 012716 99 FLEDIGIMHSLGVNSYRFSIS----WPR---ILPKG-----------RFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~----W~r---i~p~~-----------~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 160 (458)
.++-|+.|+..++|.+.+-++ |+- .+|.- ..|.+.+ +=.+++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec--
Confidence 677799999999999887776 522 12221 0245555 347899999999999999877
Q ss_pred CCCchhH
Q 012716 161 HDFPQQL 167 (458)
Q Consensus 161 ~~~P~~l 167 (458)
|+|-..
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 677544
No 138
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=31.72 E-value=37 Score=25.77 Aligned_cols=39 Identities=15% Similarity=0.329 Sum_probs=31.7
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCC
Q 012716 121 PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD 162 (458)
Q Consensus 121 ~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 162 (458)
+++-|.. +.=-.++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~--~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE--GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc--ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 4677775 55667899999999999999999 888887643
No 139
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=31.35 E-value=1.6e+02 Score=32.60 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=58.1
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc----hhHHHh----
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP----QQLEEK---- 170 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~---- 170 (458)
.++|++++++.|++.+|+..+.+.+ +-....|+.++++|+.+.+++..-+.| ..+.+-
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 3556899999999999999766653 224567788888888888877665555 222110
Q ss_pred ------------hCCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcc
Q 012716 171 ------------YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (458)
Q Consensus 171 ------------~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~ 209 (458)
-.|...|..+ .+..+.+-++++-.+ ..-+-|-..+
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~~v---~~lv~~lk~~~~~pi-~~H~Hnt~Gl 205 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPKAA---YELVSALKKRFGLPV-HLHSHATTGM 205 (582)
T ss_pred HHcCCCEEEECCCCCCcCHHHH---HHHHHHHHHhCCCce-EEEecCCCCc
Confidence 1455665443 444445556665222 4557776664
No 140
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=31.28 E-value=1.5e+02 Score=31.61 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCeEEecc-CCCc-cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCCh
Q 012716 100 LEDIGIMHSLGVNSYRFSI-SWPR-ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSP 177 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W~r-i~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 177 (458)
+|.+++|+++|++.+-+++ +-+. +...-..| .+ ++.+.+.+..++++||.+.+++- +.+| ..++
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP---------get~ 352 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLP---------GETR 352 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC---------CCCH
Confidence 5678999999999888877 3322 11111011 22 35677899999999999887764 2444 2345
Q ss_pred HhHHHHHHHHHH
Q 012716 178 QMQKEFVHLAKT 189 (458)
Q Consensus 178 ~~~~~F~~ya~~ 189 (458)
+.+..-.+|+..
T Consensus 353 e~~~~ti~~~~~ 364 (472)
T TIGR03471 353 ETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 141
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.82 E-value=80 Score=30.58 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=41.0
Q ss_pred chhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE
Q 012716 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (458)
Q Consensus 94 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 156 (458)
....+++.-|++++.+|.+.+++........+.. ...-+..++.++++.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP--NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3566788889999999999999964322111111 111234567788889999999986654
No 142
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.67 E-value=2.7e+02 Score=28.25 Aligned_cols=68 Identities=22% Similarity=0.377 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCcceEeecCC-----CCchhHHHh-------------h--------C---CCCChHhHHHHHHHHHHHH
Q 012716 141 NYLIDNLLLRGIEPFVTIYHH-----DFPQQLEEK-------------Y--------G---SWLSPQMQKEFVHLAKTCF 191 (458)
Q Consensus 141 ~~~i~~l~~~gi~p~vtL~H~-----~~P~~l~~~-------------~--------g---gw~~~~~~~~F~~ya~~~~ 191 (458)
.++|+.|+++|++.++.+.-+ +.|..-+.. | + -|+|++..+.|.+.-+.++
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 689999999999987655422 123221110 0 1 3688999999887766654
Q ss_pred HHhCCCccEEEeccCCccc
Q 012716 192 ENFGDRVKYWATLNEPNLL 210 (458)
Q Consensus 192 ~~~gd~v~~w~t~NEp~~~ 210 (458)
..|- --+|+=+|||..+
T Consensus 147 -~~Gv-dg~w~D~~Ep~~~ 163 (339)
T cd06604 147 -DLGV-DGIWNDMNEPAVF 163 (339)
T ss_pred -hCCC-ceEeecCCCcccc
Confidence 3332 3478889999865
No 143
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=29.30 E-value=2.4e+02 Score=29.45 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=54.4
Q ss_pred HHHHHHHHhc-CCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHHhhCCCCCh
Q 012716 100 LEDIGIMHSL-GVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLSP 177 (458)
Q Consensus 100 ~eDi~l~k~l-G~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 177 (458)
.+|++.++.| ++. .++++- .|.+ ... .+.++.+.+.++||+.. ++...|..|.+ ++|.+.|+
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH----~~~d--~~~------d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~p 106 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALH----IPWD--RVE------DYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTHP 106 (378)
T ss_pred HHHHHHHHhhcCCC-Cceeec----cCCc--ccc------CHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCCC
Confidence 6788888887 555 666651 2222 112 26788888999999987 78777766654 34777765
Q ss_pred --HhHHHHHHHHHHHH---HHhCCC
Q 012716 178 --QMQKEFVHLAKTCF---ENFGDR 197 (458)
Q Consensus 178 --~~~~~F~~ya~~~~---~~~gd~ 197 (458)
++.+.-.++.+.|. +.+|..
T Consensus 107 D~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 107 DKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56667777777664 667763
No 144
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=28.79 E-value=1.6e+02 Score=25.80 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCcceEeecCCCCc---hhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCc
Q 012716 138 NFYNYLIDNLLLRGIEPFVTIYHHDFP---QQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRV 198 (458)
Q Consensus 138 ~~y~~~i~~l~~~gi~p~vtL~H~~~P---~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v 198 (458)
+=+.-+++.|++.|++|++.+ .| .|.. |-|. +++..+.|.+=.+.++++.|=+|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi----~PvNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVI----QPVNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--------HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHcCCceEEEe----cCCcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCEE
Confidence 446789999999999999988 35 3432 4564 67778888888888888887654
No 145
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=28.53 E-value=1.5e+02 Score=28.97 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=42.6
Q ss_pred HHHHHHHHhcC----CCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 100 LEDIGIMHSLG----VNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 100 ~eDi~l~k~lG----~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.+|++++.+.| ++.+|+.++.+.+.-...-+.--.+.++-..+.+..+++.|++..+++
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 78999999999 999999887665532211122223457778899999999999876544
No 146
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=28.16 E-value=64 Score=34.07 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCCeEEecc------CCCccccCCCCCCC--ChhHHHHHHHHHHHHHHcCCcceEee--cC
Q 012716 101 EDIGIMHSLGVNSYRFSI------SWPRILPKGRFGKV--NPAGINFYNYLIDNLLLRGIEPFVTI--YH 160 (458)
Q Consensus 101 eDi~l~k~lG~~~~R~si------~W~ri~p~~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtL--~H 160 (458)
+-++.+++||+++.=++= ++.+--... --.+ ....++-.+++|+++.++||+.|+.+ +|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~D-y~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSD-YTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccc-hhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 667999999999985432 111111111 0112 23456778999999999999999987 66
No 147
>PLN02389 biotin synthase
Probab=28.14 E-value=1.5e+02 Score=30.80 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=42.2
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCc-cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPR-ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~r-i~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.-+|.++.||++|++.|-.+++=++ +++.-. ..- ..+.+-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~-~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI-TTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC-CCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999886233 555431 111 24667799999999999887665
No 148
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=28.12 E-value=2.8e+02 Score=28.22 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=48.8
Q ss_pred HHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012716 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (458)
Q Consensus 102 Di~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 164 (458)
+.+.+|++|.++..|=+=|. |++ +-.+|..-.++.+++.++|.+.||-=++-+--+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~-~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD-AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC-ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 36889999999999988775 333 245888889999999999999999988888766554
No 149
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=28.00 E-value=1.6e+02 Score=29.55 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCccccccccc
Q 012716 137 INFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYI 216 (458)
Q Consensus 137 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~ 216 (458)
++-+.+.++.++++||++.+++. +.+| | +..+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlP--------g----et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLP--------G----EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCC--------C----CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 35577899999999999776654 3444 1 234666666666555444678888888888876655566
Q ss_pred ccccCC
Q 012716 217 RGTYPP 222 (458)
Q Consensus 217 ~g~~~P 222 (458)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 665544
No 150
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=27.96 E-value=1.9e+02 Score=30.34 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred chHHHHHHHHhcCCC--eEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC---CCc---hhHHH
Q 012716 98 RFLEDIGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFP---QQLEE 169 (458)
Q Consensus 98 ry~eDi~l~k~lG~~--~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P---~~l~~ 169 (458)
...+-++.+++.|+- ++=+...|..-..+ -.+|.+-..-.+++|+.|+++|++.++.++-+ +.+ ..-..
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~---f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD---FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT---T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc---cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 356677788877765 45455566653222 34555544456899999999999988766532 222 11110
Q ss_pred h---h-----CC----------------CCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCccc
Q 012716 170 K---Y-----GS----------------WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (458)
Q Consensus 170 ~---~-----gg----------------w~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~ 210 (458)
+ + .| |.+++..++|.+..+.+++.+|- --+|+=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 0 0 12 78899999998888887777654 3478899999874
No 151
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.86 E-value=5.5e+02 Score=25.54 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=32.3
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCC
Q 012716 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (458)
Q Consensus 122 ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 161 (458)
+..|.. .|-++.+-++.++++++.++++|-+.++=|.|-
T Consensus 62 ~~~~~~-~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQ-LGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCC-cCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 334443 367888999999999999999999999999983
No 152
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=27.56 E-value=3.6e+02 Score=28.02 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE-eecCCCCchhHHHhhCCCCC
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV-TIYHHDFPQQLEEKYGSWLS 176 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tL~H~~~P~~l~~~~ggw~~ 176 (458)
...+-++.++++|++.+=| ....+.|-+ -...+.. ...+++=+.|.++||++.. +..-+..|.+. .|++.+
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~--~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~las 104 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG--APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGFTS 104 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC--CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCCCC
Confidence 4688899999999998854 434556654 1111111 3367788889999999654 44323233331 267776
Q ss_pred h--HhHHHHHHHHH---HHHHHhCCC
Q 012716 177 P--QMQKEFVHLAK---TCFENFGDR 197 (458)
Q Consensus 177 ~--~~~~~F~~ya~---~~~~~~gd~ 197 (458)
+ ++.+.=.++.+ .+++.+|-+
T Consensus 105 ~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 105 NDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 23333233333 235667664
No 153
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=26.98 E-value=2.5e+02 Score=28.84 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=53.0
Q ss_pred hHHHHHHHHhcCCCeEEecc-CC-CccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHHhhCCCC
Q 012716 99 FLEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWL 175 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si-~W-~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~ 175 (458)
=++.+++|+++|++.+-+++ += +++...- ....+ .+-..+.|+.+++.|+..+ +.+ =+++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC---------C
Confidence 36889999999999666666 22 2333221 11222 3557789999999999754 333 245552 2
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccc
Q 012716 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLT 211 (458)
Q Consensus 176 ~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 211 (458)
+ .+.|.+=.+.+.+.=-+.|..+...-+|....
T Consensus 165 t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 T---IEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred C---HHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 3 33344444444332223444444445666443
No 154
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=26.50 E-value=3.7e+02 Score=27.04 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCcceEeecCC---CCchhHHHh---h--------------------CCCCChHhHHHHHHHHHHHHH
Q 012716 139 FYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK---Y--------------------GSWLSPQMQKEFVHLAKTCFE 192 (458)
Q Consensus 139 ~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~---~--------------------ggw~~~~~~~~F~~ya~~~~~ 192 (458)
--.++|+.|+++|++.++.+.-+ +.+.+-+-+ | --|+||+..+.|.+..+..+.
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 146 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYY 146 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhh
Confidence 34789999999999988866422 122211100 0 126788888888776655444
Q ss_pred HhCCCccEEEeccCCcccc
Q 012716 193 NFGDRVKYWATLNEPNLLT 211 (458)
Q Consensus 193 ~~gd~v~~w~t~NEp~~~~ 211 (458)
..|- --+|+=+|||....
T Consensus 147 ~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 147 DKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred cCCC-cEEEecCCCCCccC
Confidence 4443 35788999998653
No 155
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=26.36 E-value=79 Score=35.52 Aligned_cols=65 Identities=28% Similarity=0.497 Sum_probs=42.6
Q ss_pred hhchHHH-HHHHHhcCCCeEEecc--CC-Ccc-----------ccCCCCCCCC-hhHHHHHHHHHHHHHHcCCcceEeec
Q 012716 96 YHRFLED-IGIMHSLGVNSYRFSI--SW-PRI-----------LPKGRFGKVN-PAGINFYNYLIDNLLLRGIEPFVTIY 159 (458)
Q Consensus 96 y~ry~eD-i~l~k~lG~~~~R~si--~W-~ri-----------~p~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~vtL~ 159 (458)
|.-+.|+ +..+|+||.|++.+=- +- +.. -|....|..+ ..-+.=.+.||++|.+.||++++.+-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 9999999999887311 11 121 1111112222 11133488999999999999999876
Q ss_pred C
Q 012716 160 H 160 (458)
Q Consensus 160 H 160 (458)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 156
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.29 E-value=4.7e+02 Score=23.78 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012716 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (458)
Q Consensus 102 Di~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 164 (458)
|.+.+|+.|++..=+=+. +| .+.+|. .|..-++.++++|| .+..|||-.|
T Consensus 13 d~~~~k~~gi~fviiKat------eG-~~y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EG-TTFVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CC-CcccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 567777777664322221 33 234563 46777888888888 3578887654
No 157
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=25.93 E-value=1.3e+02 Score=33.30 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCcceEee
Q 012716 137 INFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 137 ~~~y~~~i~~l~~~gi~p~vtL 158 (458)
++=+++||++|.++||++|+.+
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDv 249 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDV 249 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 3568999999999999999974
No 158
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=25.84 E-value=2.5e+02 Score=29.24 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCC--CCCCChhHHHHHHHHHHHHHHcCCc-ceEeecCCCCchhHHHhhCCCCC
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWLS 176 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~--~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~ 176 (458)
++.++.|+++|+|.+-+++ ...-++-- -|+.- ..+-..+.++.+++.|++ +-++|. +++|.
T Consensus 115 ~e~l~~l~~~GvnrislGv--QS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGV--QAFQDELLALCGRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEc--ccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999999555555 22222210 12221 123456788999999998 445664 45662
Q ss_pred hHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccccccccccc
Q 012716 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGT 219 (458)
Q Consensus 177 ~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~ 219 (458)
++.+.+.+=++.+.+-=-+.|..+...-||.......+..|.
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~ 220 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGK 220 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCC
Confidence 223344443444433323567777777788765443444444
No 159
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=25.82 E-value=8e+02 Score=25.94 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=55.4
Q ss_pred hHHHHHHHHhcCCCeEEecc--CCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EeecCCCCchh--HHHhhCC
Q 012716 99 FLEDIGIMHSLGVNSYRFSI--SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQ--LEEKYGS 173 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si--~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~--l~~~~gg 173 (458)
-.+|++.+++|.--..|+++ .|.. +|.+.++ +.++++||+.- ++..-|..|+. -.=++|.
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd~---------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GS 136 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWDK---------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGS 136 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCc---------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccc
Confidence 36788888888766666665 7721 3554444 88999999998 77766776732 1112366
Q ss_pred CCCh--HhHHHHHHHHHHH---HHHhCCC
Q 012716 174 WLSP--QMQKEFVHLAKTC---FENFGDR 197 (458)
Q Consensus 174 w~~~--~~~~~F~~ya~~~---~~~~gd~ 197 (458)
..|| ++.+...+....| .+..|.+
T Consensus 137 LtnPD~~VR~~AIeh~~~~i~Ig~elGs~ 165 (412)
T TIGR02629 137 LSHTDAATRRQAVEHNLECIEIGKALGSK 165 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7665 5667777776666 4666664
No 160
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.63 E-value=5.9e+02 Score=24.54 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=35.5
Q ss_pred chHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE
Q 012716 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 156 (458)
-+++-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~--~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR--LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc--cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 378999999999999998864311111111 11233 3466788888899999753
No 161
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.61 E-value=2.2e+02 Score=28.71 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCCCeEEecc----CCCc---cccCCC-----CCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchh
Q 012716 99 FLEDIGIMHSLGVNSYRFSI----SWPR---ILPKGR-----FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQ 166 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si----~W~r---i~p~~~-----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 166 (458)
.++=|+.|+..++|.+-+-+ +|+- -+|.-+ .|.+-+ +-++++++.++++||++|.-+ |+|-.
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCccc
Confidence 56778999999999887765 5642 334321 134554 447899999999999999887 67754
No 162
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.36 E-value=79 Score=32.33 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHh
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQM 179 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 179 (458)
.+|++.+.+.|++.+|+...+++. +--.+.|+.+++.|+++.+++..- + +-.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~~ 142 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MAP 142 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CCC
Confidence 589999999999999998755543 124789999999999999988631 1 123
Q ss_pred HHHHHHHHHHHHHHhCC
Q 012716 180 QKEFVHLAKTCFENFGD 196 (458)
Q Consensus 180 ~~~F~~ya~~~~~~~gd 196 (458)
++.+++.++.+. .+|-
T Consensus 143 ~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 143 PEKLAEQAKLME-SYGA 158 (337)
T ss_pred HHHHHHHHHHHH-hCCC
Confidence 556666666653 4553
No 163
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=24.88 E-value=1.8e+02 Score=28.49 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=33.3
Q ss_pred hhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHH
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNL 147 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l 147 (458)
-....++||+.++++|++-+=|++- -| +|.+|.+. ..++|+.+
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L----~~---dg~vD~~~---~~~Li~~a 113 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL----DV---DGHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE----CC---CCCcCHHH---HHHHHHHh
Confidence 3567899999999999999999874 12 47899865 45667666
No 164
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.73 E-value=2.1e+02 Score=28.45 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCC--CeEEeccCCCccc-----cCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEeecCCC-C-c---hh
Q 012716 100 LEDIGIMHSLGV--NSYRFSISWPRIL-----PKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD-F-P---QQ 166 (458)
Q Consensus 100 ~eDi~l~k~lG~--~~~R~si~W~ri~-----p~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~-~-P---~~ 166 (458)
++=++.+++.|+ +++=+.+.|..-- .++. .=.+|.+-..-..++|+.|+++|++.++.++=.. . | ..
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y 107 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY 107 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH
Confidence 344455554444 3555566664311 0110 1123433333357899999999999888775321 1 1 11
Q ss_pred --HHHhh-----------CCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccCCccc
Q 012716 167 --LEEKY-----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (458)
Q Consensus 167 --l~~~~-----------ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~ 210 (458)
+.... .-++||+..+.|.+-....+...|- .-.|.=+|||...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gi-dg~W~D~~E~~~~ 163 (292)
T cd06595 108 PEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGV-DFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCC-cEEEecCCCCccc
Confidence 11111 1267777777665544443444442 2478889999754
No 165
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=24.69 E-value=3.6e+02 Score=27.71 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCC--CCCCChhHHHHHHHHHHHHHHcCCc-ceEeecCCCCchhHHHhhCCCCC
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWLS 176 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~--~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~ 176 (458)
++.+++|+++|++.+.+++ ...-++-- -|+. ...+-..+.++.+++.|+. +.++|- +.+|.
T Consensus 108 ~e~l~~l~~~G~~rvslGv--QS~~~~~L~~l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGM--QSAAPHVLAVLDRT--HTPGRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred HHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 5889999999999555555 33322210 1222 1234567889999999998 545553 34442
Q ss_pred hHhHHHHHHHHHHHHHHhC-CCccEEEeccCCcccc
Q 012716 177 PQMQKEFVHLAKTCFENFG-DRVKYWATLNEPNLLT 211 (458)
Q Consensus 177 ~~~~~~F~~ya~~~~~~~g-d~v~~w~t~NEp~~~~ 211 (458)
++.+.|.+=.+.+.+ ++ +.|..+...-||+...
T Consensus 172 -qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 172 -ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred -CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChH
Confidence 223444444444433 33 4555555445666543
No 166
>PRK01060 endonuclease IV; Provisional
Probab=24.66 E-value=3.5e+02 Score=26.16 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=37.2
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF 155 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 155 (458)
+++-++.++++|++.+-+.+.-++.+.. +..+.+- .+++-+.+.++||+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~---~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR---KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC---CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 7888999999999999998876655433 2455433 4556666779999853
No 167
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.59 E-value=1.3e+02 Score=29.21 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=40.6
Q ss_pred hhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 95 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
.-.++++-+++++++|.+.+++.- .+..+.......-...++.++++++.+.+.||+..+=.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecC--cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345678889999999999999852 11211110011122356778888999999999777643
No 168
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=24.38 E-value=1.7e+02 Score=30.02 Aligned_cols=110 Identities=23% Similarity=0.451 Sum_probs=59.2
Q ss_pred hhchHHHHHHHHhcCCCeEE---------------ec---------------cCCCccccCCC-CCCCChhH----HHHH
Q 012716 96 YHRFLEDIGIMHSLGVNSYR---------------FS---------------ISWPRILPKGR-FGKVNPAG----INFY 140 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R---------------~s---------------i~W~ri~p~~~-~g~~n~~~----~~~y 140 (458)
|.||++.||.|+=-|+|.-= |+ ..|.|.---.. .|.+..+. .+-=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 68899999999999998542 11 13444422211 23333222 2344
Q ss_pred HHHHHHHHHcCCcceEeecCCCCchhHHHhh--------CCC--------CChHhHHHHHHHHHHH----HHHhCCCccE
Q 012716 141 NYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY--------GSW--------LSPQMQKEFVHLAKTC----FENFGDRVKY 200 (458)
Q Consensus 141 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw--------~~~~~~~~F~~ya~~~----~~~~gd~v~~ 200 (458)
+++++.+++-||+|++--+---.|..|.+++ +.| ++| .-+.|.+.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7899999999999999877666888887776 223 222 335676666655 46688 4455
Q ss_pred EE--eccCC
Q 012716 201 WA--TLNEP 207 (458)
Q Consensus 201 w~--t~NEp 207 (458)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 55 88884
No 169
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=24.36 E-value=3.1e+02 Score=33.64 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=50.8
Q ss_pred chhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCC---------CCCh------hHHHHHHHHHHHHHHc-CCcceEe
Q 012716 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFG---------KVNP------AGINFYNYLIDNLLLR-GIEPFVT 157 (458)
Q Consensus 94 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g---------~~n~------~~~~~y~~~i~~l~~~-gi~p~vt 157 (458)
.-+..|++.++.++++|+|++-|. -|+|.|..+ .+|+ .+.+-..++|+.+.++ ||..|+.
T Consensus 129 G~~~~w~~~L~~ik~lGyN~Ihft----PI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFT----PLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----CCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 446779999999999999998764 455554211 1332 2445578999999996 9999986
Q ss_pred --ecC--CCCchhHHH
Q 012716 158 --IYH--HDFPQQLEE 169 (458)
Q Consensus 158 --L~H--~~~P~~l~~ 169 (458)
++| +|.| |+.+
T Consensus 205 vV~NHTa~ds~-Wl~e 219 (1464)
T TIGR01531 205 IVFNHTANNSP-WLLE 219 (1464)
T ss_pred eeecccccCCH-HHHh
Confidence 567 5665 6653
No 170
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.34 E-value=1.7e+02 Score=27.82 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=35.9
Q ss_pred HHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 104 GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 104 ~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
+++|++|++..=++-|=.| +.+. | -.+-+..++++||+|+++.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et-----d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA-----D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc-----H------HHHHHHHHHHCCCEEEEEE
Confidence 7999999999999998888 4332 1 3577889999999999999
No 171
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=24.30 E-value=2.3e+02 Score=29.59 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=31.7
Q ss_pred HHHHHhcCCCeEEeccCCCc---cccCCCCCCCChh----HHHHHHHHHHHHHHcCCcceE
Q 012716 103 IGIMHSLGVNSYRFSISWPR---ILPKGRFGKVNPA----GINFYNYLIDNLLLRGIEPFV 156 (458)
Q Consensus 103 i~l~k~lG~~~~R~si~W~r---i~p~~~~g~~n~~----~~~~y~~~i~~l~~~gi~p~v 156 (458)
++++|++|++.+=+.-.=.. +.|+.. ..+|-. .-+-..++.++|+++||+.-+
T Consensus 87 a~~~k~AGakY~vlTaKHHDGF~lw~S~~-t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDGFCLWDSKY-SNWNAVDTGPKRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCCccccCCCC-CCCcccCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 79999999997653221000 112210 011100 125578999999999999877
No 172
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.74 E-value=1.3e+02 Score=26.98 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=40.1
Q ss_pred cCcchhhchHHHHH-HHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce
Q 012716 91 VADDHYHRFLEDIG-IMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF 155 (458)
Q Consensus 91 ~a~d~y~ry~eDi~-l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 155 (458)
.+|......++||. .++++|++.+++.+.|+----. ..+.++| -..|++.||.|=
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~---d~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT---DWITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh---HHCCHHH-------HHHHHhcCccCC
Confidence 46777888889884 4777899999998877654322 3566544 467899999884
No 173
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.68 E-value=2e+02 Score=29.68 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCCC--CCCCChhHHHHHHHHHHHHHHcCCcc-eEeecCCCCchhHHHhhCCCCC
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIEP-FVTIYHHDFPQQLEEKYGSWLS 176 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~~--~g~~n~~~~~~y~~~i~~l~~~gi~p-~vtL~H~~~P~~l~~~~ggw~~ 176 (458)
++.++.|+++|++ |+||.-..+-++-- -|+.. ..+-..+.|+.+++.|+.. -+.|- +.+|.
T Consensus 103 ~~~l~~l~~~G~n--rislGvQS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGIN--RISIGVQTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCC--EEEEccccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999999 45554444433320 12221 1344667888999999974 45543 45552
Q ss_pred hHhHHHHHHHHHHHHHHhCCCccEEEeccCCcccc
Q 012716 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLT 211 (458)
Q Consensus 177 ~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 211 (458)
++.+.|.+=.+.+.+.=-+.|..+...-||....
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 3455666666666553346788888888887543
No 174
>PRK07094 biotin synthase; Provisional
Probab=23.68 E-value=96 Score=31.09 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=39.7
Q ss_pred chHHHHHHHHhcCCCeEEeccC-C-CccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 012716 98 RFLEDIGIMHSLGVNSYRFSIS-W-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (458)
Q Consensus 98 ry~eDi~l~k~lG~~~~R~si~-W-~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 158 (458)
+-+|+++.|+++|++.+-++++ - +++...- .... ..+-+.+.|+.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i-~~~~---s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKL-HPGM---SFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHh-CCCC---CHHHHHHHHHHHHHcCCeecceE
Confidence 4579999999999999998884 2 2343332 1112 23557889999999999765444
No 175
>PTZ00445 p36-lilke protein; Provisional
Probab=23.55 E-value=1.3e+02 Score=28.80 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=40.7
Q ss_pred HHHHHhcCCCeEEeccCCCccccCCCCCCCChh---------HHHHHHHHHHHHHHcCCcceEeec
Q 012716 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPA---------GINFYNYLIDNLLLRGIEPFVTIY 159 (458)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 159 (458)
++++++.|++++=+.++=.-|---. .|-.++. +-.-...++..|+++||..+|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hs-gG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHS-GGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhc-ccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 5889999999999888766554221 1333332 344578899999999999988765
No 176
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.10 E-value=3.4e+02 Score=27.63 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCeEEecc-CCC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHHhhCCCCC
Q 012716 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLS 176 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W~-ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~ 176 (458)
++.+++|+++|+|-+.++| +-+ .+... -|+.. ..+-..+.|+.+++.|+..+ ++|- +.+|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~--lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF--LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH--cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6899999999999666666 433 22222 13321 13557789999999999865 5553 45552
Q ss_pred hHhHHHHHHHHHHHHHHhCCCccEEEeccCCc
Q 012716 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (458)
Q Consensus 177 ~~~~~~F~~ya~~~~~~~gd~v~~w~t~NEp~ 208 (458)
++.+.|.+-.+.+.+-=-+.|..+...=||+
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 3344555555554432223444444333444
No 177
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.08 E-value=2.2e+02 Score=28.87 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=48.2
Q ss_pred CcCcchh--hchHHHHHHHHhcCCCeEEeccC-----------CCccccCCC--------CCCCChhHHHHHHHHHHHHH
Q 012716 90 DVADDHY--HRFLEDIGIMHSLGVNSYRFSIS-----------WPRILPKGR--------FGKVNPAGINFYNYLIDNLL 148 (458)
Q Consensus 90 ~~a~d~y--~ry~eDi~l~k~lG~~~~R~si~-----------W~ri~p~~~--------~g~~n~~~~~~y~~~i~~l~ 148 (458)
|+|-.++ ...++-|+.|+..++|.+-+-++ ++.+-..+. .|.+-. +=++++++.++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHH
Confidence 4444444 33678899999999998776652 333322210 133444 44789999999
Q ss_pred HcCCcceEeecCCCCchhH
Q 012716 149 LRGIEPFVTIYHHDFPQQL 167 (458)
Q Consensus 149 ~~gi~p~vtL~H~~~P~~l 167 (458)
++||++|.-+ |+|-..
T Consensus 86 ~rgI~vIPEi---D~PGH~ 101 (329)
T cd06568 86 ERHITVVPEI---DMPGHT 101 (329)
T ss_pred HcCCEEEEec---CCcHHH
Confidence 9999999877 788654
No 178
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=23.05 E-value=1.3e+02 Score=37.41 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=44.4
Q ss_pred hhchHHHHHHHHhcCCCeEEeccCCCccc--cCCC----CCCCChh--HHHHHHHHHHHHHHcCCcceEee--cCCC
Q 012716 96 YHRFLEDIGIMHSLGVNSYRFSISWPRIL--PKGR----FGKVNPA--GINFYNYLIDNLLLRGIEPFVTI--YHHD 162 (458)
Q Consensus 96 y~ry~eDi~l~k~lG~~~~R~si~W~ri~--p~~~----~g~~n~~--~~~~y~~~i~~l~~~gi~p~vtL--~H~~ 162 (458)
..-..+-++-+++||++++=+|=-+.-.- ..|. -..+|++ +.+=+++++++|+++||++|+.+ +|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 45577889999999999997765444110 0010 0112222 45568999999999999999974 5653
No 179
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=23.02 E-value=2.4e+02 Score=28.95 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=61.3
Q ss_pred CCcCcchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecCCCCchhHH
Q 012716 89 GDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLE 168 (458)
Q Consensus 89 ~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 168 (458)
+=+|.=||+ |+--+.. .+.|++.+|+. + |.+-. -+..+.+++.++++|+-.=+..+|-.++.-+.
T Consensus 74 PlVADIHFd-~~lAl~a-~~~g~dkiRIN---------P--GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~ 138 (346)
T TIGR00612 74 PLVADIHFD-YRLAALA-MAKGVAKVRIN---------P--GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLL 138 (346)
T ss_pred CEEEeeCCC-cHHHHHH-HHhccCeEEEC---------C--CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHH
Confidence 334555665 4444433 35588888763 3 44422 36789999999999999999999999999999
Q ss_pred HhhCCCCChHhHHHHHHHHHHH
Q 012716 169 EKYGSWLSPQMQKEFVHLAKTC 190 (458)
Q Consensus 169 ~~~ggw~~~~~~~~F~~ya~~~ 190 (458)
++||+-+.+..++--.++++.+
T Consensus 139 ~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 139 EKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHcCCCCHHHHHHHHHHHHHHH
Confidence 9987644455666666666655
No 180
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.85 E-value=65 Score=19.93 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCcc
Q 012716 140 YNYLIDNLLLRGIEP 154 (458)
Q Consensus 140 y~~~i~~l~~~gi~p 154 (458)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 357888888999988
No 181
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=22.83 E-value=1e+02 Score=31.07 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=38.6
Q ss_pred hHhHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCCCCcCChhhHHHHHHHHHHHHH
Q 012716 397 PEGMEKIVDYVKDRYKNIPMYVTENGYSPPKQKNQRSQDLVDDVKRIEYHSGYLSALAR 455 (458)
Q Consensus 397 P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~yl~~hL~~l~~ 455 (458)
|..+...|+++.+ .+. ||.|||.-+...+... ..-.+..+.+++++.++.+..
T Consensus 219 ~~~i~~~l~~~~~-~Gl-~i~ITElDv~~~~~~~----~~~~~~~qA~~~~~~~~~~~~ 271 (320)
T PF00331_consen 219 PEQIWNALDRFAS-LGL-PIHITELDVRDDDNPP----DAEEEEAQAEYYRDFLTACFS 271 (320)
T ss_dssp HHHHHHHHHHHHT-TTS-EEEEEEEEEESSSTTS----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCC-ceEEEeeeecCCCCCc----chHHHHHHHHHHHHHHHHHHh
Confidence 7899999999965 575 5999999887764210 012356788899888887764
No 182
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=22.61 E-value=1.6e+02 Score=26.40 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCcce--EeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCccEEEeccC
Q 012716 138 NFYNYLIDNLLLRGIEPF--VTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNE 206 (458)
Q Consensus 138 ~~y~~~i~~l~~~gi~p~--vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~~gd~v~~w~t~NE 206 (458)
+=|+++++.|++.++..- ..+.+--+|..+.++. =-.|=...++|..+-+.+++.++.+++--.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~ea-VPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKEA-VPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhhc-CCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 349999999999986532 2344556777665441 1223456889999999999999988876666666
No 183
>PRK10426 alpha-glucosidase; Provisional
Probab=21.97 E-value=6.3e+02 Score=28.23 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=64.5
Q ss_pred hHHHHHHHHhcCCCe--EEeccCCCccccCCC--C----CCCChhHHHHHHHHHHHHHHcCCcceEeecCC---CCchhH
Q 012716 99 FLEDIGIMHSLGVNS--YRFSISWPRILPKGR--F----GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQL 167 (458)
Q Consensus 99 y~eDi~l~k~lG~~~--~R~si~W~ri~p~~~--~----g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l 167 (458)
..+-++.+++.|+.. +=+. .|+....... . -.+|.+-.--.+++|+.|++.|++.++.+.=+ +.|.+-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 455678888888654 3334 6764422210 0 12344333335789999999999988876532 334332
Q ss_pred HHh---h------C---------------CCCChHhHHHHHHHHHHHHHHhCCCcc-EEEeccCC
Q 012716 168 EEK---Y------G---------------SWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEP 207 (458)
Q Consensus 168 ~~~---~------g---------------gw~~~~~~~~F~~ya~~~~~~~gd~v~-~w~t~NEp 207 (458)
+.. | | -++|++..++|.+..+..+...| |+ .|.=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 1 17899999999887766555555 54 45788994
No 184
>PTZ00445 p36-lilke protein; Provisional
Probab=21.80 E-value=1.2e+02 Score=29.04 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCcceEeecCCCCchhHHH-hhCCCCChH---------hHHHHHHHHHHHH
Q 012716 139 FYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE-KYGSWLSPQ---------MQKEFVHLAKTCF 191 (458)
Q Consensus 139 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~-~~ggw~~~~---------~~~~F~~ya~~~~ 191 (458)
--+.+++.|++.||+.+++=+ | .-+.. .-|||.++. ..+.|......+-
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~--D--nTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDF--D--LTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecc--h--hhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 347888999999999998532 2 22222 238998887 5555666655543
No 185
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=21.72 E-value=2.4e+02 Score=28.04 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCCcCcchhhchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeec
Q 012716 88 NGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (458)
Q Consensus 88 ~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 159 (458)
+.|-+|-.=..|..|+++++.-+. .+|. . | -|... ..++..++.+.|++.++.++
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~-------Y-----~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRT-------Y-----G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEE-------e-----e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 344577777889999999999886 5553 1 2 23322 45889999999999999884
No 186
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=21.44 E-value=2.7e+02 Score=28.78 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHH
Q 012716 138 NFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTC 190 (458)
Q Consensus 138 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~ 190 (458)
+..+.+++.++++|+..=+..+|-.++..+.++||+-+.+..++--.++++.+
T Consensus 117 ~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~l 169 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKIL 169 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999986534445666666666655
No 187
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=21.29 E-value=1.3e+02 Score=25.59 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCeEEeccC-CCcc-ccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE
Q 012716 100 LEDIGIMHSLGVNSYRFSIS-WPRI-LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~-W~ri-~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 156 (458)
++.++.++++|++.+++|++ -+.- .... .+ .....+..-+.++.|+++|+.+++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~-~~--~~~~~~~~~~~l~~l~~~g~~~~~ 145 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRI-IN--RGKSFERVLEALERLKEAGIPRVI 145 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHH-HS--STSHHHHHHHHHHHHHHTTSETEE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhh-hc--CCCCHHHHHHHHHHHHHcCCCcEE
Confidence 89999999999999999993 3321 1111 01 113346677899999999999633
No 188
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.95 E-value=3.1e+02 Score=30.43 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=33.6
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 160 (458)
.++|++++++.|++.+|+..+-+.+ +--...|+.++++|....+++..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 4677899999999999998766554 11345566666777766666643
No 189
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.87 E-value=1.5e+02 Score=31.37 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCeEEeccCCCccccCC--CCCC-CChhHHHHHHHHHHHHHHcCCc-ceEeecCCCCc
Q 012716 100 LEDIGIMHSLGVNSYRFSISWPRILPKG--RFGK-VNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFP 164 (458)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~p~~--~~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P 164 (458)
++.+++|+++|++.+-+++ ...-++- .-++ .+ .+.+.+.++.|++.|++ +-+.|. +.+|
T Consensus 151 ~e~l~~lk~~G~~risiGv--qS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV--QDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 6889999999999555555 3333221 0122 22 35578899999999997 334442 3455
No 190
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.78 E-value=4.4e+02 Score=25.45 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=38.1
Q ss_pred hchHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHc-CCcceE
Q 012716 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLR-GIEPFV 156 (458)
Q Consensus 97 ~ry~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~v 156 (458)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 6689999999999999999888766544443 1233 3456777777777 665443
No 191
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.69 E-value=1.3e+02 Score=32.49 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=48.4
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 160 (458)
-++|++.+.+.|++.+++.++-|.+.-...-+.--++.++-..+.+..+++.|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 38999999999999999999877664332113333467788889999999999998888765
No 192
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.27 E-value=3e+02 Score=27.03 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCc-ceE----------------eecCCCCchhHHHhhCCCCC--hHhHHHHHHHHHHHH
Q 012716 131 KVNPAGINFYNYLIDNLLLRGIE-PFV----------------TIYHHDFPQQLEEKYGSWLS--PQMQKEFVHLAKTCF 191 (458)
Q Consensus 131 ~~n~~~~~~y~~~i~~l~~~gi~-p~v----------------tL~H~~~P~~l~~~~ggw~~--~~~~~~F~~ya~~~~ 191 (458)
-+|. +.+.++++.|+++||+ |++ .+..-++|.|+.++.....+ ++..+.-.++|..++
T Consensus 166 ~fd~---~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~ 242 (272)
T TIGR00676 166 FFDN---DDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEKYDDDPEEVRAVGIEYATDQC 242 (272)
T ss_pred ccCH---HHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4665 4578889999999766 222 12356889998877544433 234456777777777
Q ss_pred HHhCCC-cc--EEEeccCCccc
Q 012716 192 ENFGDR-VK--YWATLNEPNLL 210 (458)
Q Consensus 192 ~~~gd~-v~--~w~t~NEp~~~ 210 (458)
+++-+. ++ |..|+|-+...
T Consensus 243 ~~l~~~g~~GiHl~t~n~~~~~ 264 (272)
T TIGR00676 243 EDLIAEGVPGIHFYTLNRADAT 264 (272)
T ss_pred HHHHHCCCCEEEEcCCCCHHHH
Confidence 766433 43 66678876653
No 193
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=20.22 E-value=57 Score=25.51 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=15.7
Q ss_pred cchhhch--HHHHHHHHhcCC
Q 012716 93 DDHYHRF--LEDIGIMHSLGV 111 (458)
Q Consensus 93 ~d~y~ry--~eDi~l~k~lG~ 111 (458)
.|||..| .+|++.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 4788777 478999999996
No 194
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.06 E-value=3e+02 Score=26.90 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCCeEEeccCCCccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEeecC
Q 012716 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (458)
Q Consensus 99 y~eDi~l~k~lG~~~~R~si~W~ri~p~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 160 (458)
..+-++.++++|.+++-+-+..+|....+ .++...+ +.+-..+.++++.......|
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~~---~~~~~~~~~~~~~~~~i~~H 68 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEVI---DWFKAALETNKNLSQIVLVH 68 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHHH---HHHHHHHHHcCCCCcceecc
Confidence 45678999999999999999999887654 3444333 34444577888874434445
No 195
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.05 E-value=2.8e+02 Score=31.28 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCcceEeecCCCCchhHHHhhCCCCChHhHHHHHHHHHHHH
Q 012716 139 FYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCF 191 (458)
Q Consensus 139 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~F~~ya~~~~ 191 (458)
.+..+|+.|+++|+..=+..+|-.++.-+..+||. +.+-.++-=.+|++.|-
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e 262 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICR 262 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 44556666667776664
Done!