BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012717
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 207/429 (48%), Gaps = 56/429 (13%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP---NDFYKAICKENS 57
MK C+ G PC +L +++ DC LD+S + F+PL N+ + + ++
Sbjct: 1 MKLYCV---GHSVSSPCLVLQFKQTNIMLDCGLDMSTVNQFTPLSLVNNEKFSQL--KSW 55
Query: 58 DSQNRQKVEKPLDANDL--------IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGL 109
S+ Q++E N+L I AEP L + S +DV+LIS+ ML L
Sbjct: 56 SSRELQEIEGFTAQNNLKEAGGRLFIDAEPEV-CPPETGLIDFSMVDVILISNYHHMLAL 114
Query: 110 PFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169
PF+T GF+ KIY TE +IG+ +M EL+ + +G W + L
Sbjct: 115 PFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNVIRCL 169
Query: 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG 229
P+ L ++A + L VK CISK+Q + + E+ GIL + A SSG +G
Sbjct: 170 PAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSGFCLG 225
Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
+ NW++ I+Y+S S+ + H + + ++ SD+++ + ++
Sbjct: 226 SSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA------------ 273
Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
+ N D + E C+ +++AGG+VL+P GV L E +
Sbjct: 274 -----------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDLFECL 316
Query: 350 AIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKK 408
+++ + L +PIY IS VA+ LAY+N EWLC+ +Q K++ +P F H +L+KE +
Sbjct: 317 YTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELLKEAR 376
Query: 409 IHVFPAVHS 417
+ VF +H+
Sbjct: 377 LKVFSNLHN 385
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 200/424 (47%), Gaps = 52/424 (12%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICK----EN 56
MK CL G PC+IL ++ DC LD+++ F PLP + K
Sbjct: 1 MKLYCL---SGHPTLPCNILKFKSSTIMLDCGLDMTSTLSFLPLPLVHSTRLSKLPGWVT 57
Query: 57 SDSQNR-QKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRM 115
D N+ +K K + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNNQFEKELKECSGRVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYITER 116
Query: 116 EGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRK 175
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLP+ L+
Sbjct: 117 TGFTGTVYATEPTVQIGRLLMEELV--NFIER---VPKAQSATVWKHKDVQRLLPAPLK- 170
Query: 176 IALGEDGSEL--GGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNW 233
D E+ C + V +SK+Q + + ++ G++ + SSG +G+ NW
Sbjct: 171 -----DAVEVFTWKKCYSMQEVNAALSKIQLVGYSQKIELFGVVQVTPLSSGYALGSSNW 225
Query: 234 IISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN 293
+I ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 226 VIQSHYEKVSYVSGSSLLTTHPQPMDQTSLKNSDVLILTGLTQIPT-------------- 271
Query: 294 NWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353
+N D V E CS ++++GG+VL+P GV LLE + ++
Sbjct: 272 ---------ANPDGMVGEF------CSNLAMTIRSGGNVLVPCYPSGVIYDLLECLYQYI 316
Query: 354 ECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVF 412
+ + L +P Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+ +
Sbjct: 317 DSAGLSNVPFYFISPVANSSLEFSQIFAEWLCHNKQNKVYLPEPPFPHAELIQSNKLKHY 376
Query: 413 PAVH 416
P +H
Sbjct: 377 PNIH 380
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 201/426 (47%), Gaps = 56/426 (13%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP + +
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSKLPGLVL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ S +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGSTFLDKELKE--CSGHVFVDSVPEF-CLPETELLDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W E LLP+ L
Sbjct: 115 EYTGFTGTVYATEPTVQIGRLLMEELV--NSIER---VPKAQSASTWKNKEVQRLLPAPL 169
Query: 174 RKIALGEDGSELG--GGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSMWRKCYTMPEVNAALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDGMVGEF------CSNLAMTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L +P Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSNVPFYFISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVH 416
+P++H
Sbjct: 375 HYPSIH 380
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 196/419 (46%), Gaps = 63/419 (15%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
MK CL G PC++L ++ DC LD+++ F PLP ++ +
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLP--LVQSPRLSSLPGW 55
Query: 61 NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSA 120
+ + LD +LI ++S +DV+LIS+ M+ LP++T GF+
Sbjct: 56 SLKDGNAFLDKTELI---------------DLSTVDVILISNYHCMMALPYITEHTGFTG 100
Query: 121 KIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGE 180
+Y TE +IG+L+MEEL+ N R + S W + LLPS L+
Sbjct: 101 TVYATEPTVQIGRLLMEELV--NFIER---VPKAQSASLWKNKDIQRLLPSPLK------ 149
Query: 181 DGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238
D E+ C + V +SK+Q + F ++ G + + SSG +G+ NWII
Sbjct: 150 DAVEVSTWRRCYTMQEVNSALSKIQLVGFSQKIELFGAVQVTPLSSGYALGSSNWIIQSH 209
Query: 239 KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEEL 298
++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 210 YEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGLTQIPT------------------- 250
Query: 299 MNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL 358
+N D V E CS +V+ GG+VL+P GV LLE + +++ + L
Sbjct: 251 ----ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGL 300
Query: 359 K-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVH 416
+P+Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+ +P++H
Sbjct: 301 SSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIH 359
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 201/426 (47%), Gaps = 56/426 (13%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP ++
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ + +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNAFLDKELKE--CSGHVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLPS L
Sbjct: 115 EHTGFTGTVYATEPTVQIGRLLMEELV--NFIERV---PKAQSASLWKNKDIQRLLPSPL 169
Query: 174 RKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDSMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L IP Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVH 416
+P++H
Sbjct: 375 HYPSIH 380
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 202/426 (47%), Gaps = 56/426 (13%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP ++
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ + +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNAFLDKELKE--CSGHVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLPS L
Sbjct: 115 EHTGFTGTVYATEPTVQIGRLLMEELV--NFIER---VPKAQSASLWKNKDIQRLLPSPL 169
Query: 174 RKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L +P+Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVH 416
+P++H
Sbjct: 375 HYPSIH 380
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 200/426 (46%), Gaps = 56/426 (13%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP ++
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ + +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNAFLDKELKE--CSGHVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLPS L
Sbjct: 115 EHTGFTGTVYATEPTMQIGRLLMEELV--NFIER---VPKAQSASLWKNKDIQRLLPSPL 169
Query: 174 RKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L IP Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVH 416
+ ++H
Sbjct: 375 HYRSIH 380
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/460 (24%), Positives = 200/460 (43%), Gaps = 85/460 (18%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDF------------ 48
MK CL Q PC +L +L DC L++S++ F LP +
Sbjct: 1 MKVHCLSQSAQ---SPCFLLEYKNVKILLDCALEISSILHF--LPKNLNYNNNNNNNNNN 55
Query: 49 ----------------YKAICKENSDSQNRQKVEKPL----DANDLIFAEPWYKTVNNLH 88
Y K+ +Q + + L +++ + P ++ +++
Sbjct: 56 NNNNNNNNNNNNNNNSYSFKEKDKELNQFFKNINGTLYIDNGCSNIKYNCPQFEMIDDF- 114
Query: 89 LWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQ 148
S ID++LIS+ + LPF+T F KIY TE +IG+L++EEL+ M+ +Y
Sbjct: 115 ----STIDMILISNYTNIYALPFITEYTNFQGKIYATEPTVQIGKLLLEELVQMDKQYSN 170
Query: 149 FYGAEESSGPQWMK-WEELELLPS------ALRKIALGEDGSELGGGCPCIAHVKDCISK 201
++ W+ +E+L + L D I ++ K
Sbjct: 171 SSINNNNNNNNLSDCWQNIEILEKLNVHNVGMENENLYRDSYRWKDLYKKID-IEKSFEK 229
Query: 202 VQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKG--NIAYISGSNFA-SGHAMDF 258
+Q++RF E + G I + SSG +G+ NW+I +KG + YIS S+ + S + F
Sbjct: 230 IQSIRFNESIKHYGFECIPS-SSGYGLGSANWVIE-SKGFERVVYISDSSLSLSRYPTPF 287
Query: 259 DYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFI 318
I D+++ S ++ NN +++++ L
Sbjct: 288 QLSPIDNPDVLILSKINHY-------------PNNPPDQMLSEL---------------- 318
Query: 319 CSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTN 377
CS +++ GG+VLIP G+ L L E +A ++ L +PIY +SSV++ +L+Y +
Sbjct: 319 CSNIGSTLQQGGTVLIPSYSCGIILDLFEHLADYLNKVGLPYVPIYFVSSVSKAVLSYAD 378
Query: 378 TIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHS 417
EWL K +QE+ F + F H L+++ + + VHS
Sbjct: 379 IYSEWLNKSKQERAFMPETPFLHQDLMRKGQFQAYQHVHS 418
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 113/315 (35%), Gaps = 70/315 (22%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 58 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ------------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA + I ++ Y N + + +L+
Sbjct: 141 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLL 200
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ TE ++ D E + L E+VE G
Sbjct: 201 I---------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITW-TNQKIR 291
Query: 390 KLFSGDPL--FAHVK 402
K F + F H+K
Sbjct: 292 KTFVQRNMFEFKHIK 306
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 113/315 (35%), Gaps = 70/315 (22%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 58 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ------------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA + I ++ Y N + + +L+
Sbjct: 141 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLL 200
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ TE ++ D E + L E+VE G
Sbjct: 201 I---------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITW-TNQKIR 291
Query: 390 KLFSGDPL--FAHVK 402
K F + F H+K
Sbjct: 292 KTFVQRNMFEFKHIK 306
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 113/315 (35%), Gaps = 70/315 (22%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 58 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ------------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA + I ++ Y N + + +L+
Sbjct: 141 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLL 200
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ TE ++ D E + L E+VE G
Sbjct: 201 I---------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW-TNQKIR 291
Query: 390 KLFSGDPL--FAHVK 402
K F + F H+K
Sbjct: 292 KTFVQRNMFEFKHIK 306
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 113/315 (35%), Gaps = 70/315 (22%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 58 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ------------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA + I ++ Y N + + +L+
Sbjct: 141 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLL 200
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ TE ++ D E + L E+VE G
Sbjct: 201 I---------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW-TNQKIR 291
Query: 390 KLFSGDPL--FAHVK 402
K F + F H+K
Sbjct: 292 KTFVQRNMFEFKHIK 306
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 76/297 (25%)
Query: 95 IDVVLIS--SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGA 152
ID VL+S M + LP+ + G SA +Y TE R+G L + Y F
Sbjct: 55 IDAVLLSHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTL---------YDYFISR 105
Query: 153 EESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEAC 212
+ S ++++ V L++ +
Sbjct: 106 RQVSDFDLFTLDDIDA-----------------------------AFQNVVRLKYSQNHL 136
Query: 213 YNGI---LIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRA---IQGS 266
N ++I +G D+G W I+ ++ Y A+DF++R + G+
Sbjct: 137 LNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVY----------AVDFNHRKERHLNGT 186
Query: 267 DLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSV 326
L SF + N+L+N+ V + ++ + +
Sbjct: 187 AL-----------------GSFVRPAVLITDAYNALNNH---VYKRQQDQDFIDALVKVL 226
Query: 327 KAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWL 383
GGSVL+PI+ G L++L + + L PIY +++V+ + Y + EW+
Sbjct: 227 TGGGSVLLPIDTAGRVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWM 283
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 111/315 (35%), Gaps = 70/315 (22%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+ + M G+ IY+T+ I +++E+
Sbjct: 58 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDY---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ------------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA + I ++ Y N + +
Sbjct: 141 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAW--------- 191
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ SL TE ++ D E + L E+VE G
Sbjct: 192 IDKCRPSLLITESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E LK PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPW-TNQKIR 291
Query: 390 KLFSGDPL--FAHVK 402
K F + F H+K
Sbjct: 292 KTFVQRNMFEFKHIK 306
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 111/315 (35%), Gaps = 70/315 (22%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 58 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDY---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKI + + G +KDC+ KV + +
Sbjct: 108 ------------------------RKITVDKKGET---NFFTSQMIKDCMKKVVAVHLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA + I ++ Y N + + DL+
Sbjct: 141 TVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLL 200
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ TE ++ D E + L E+VE G
Sbjct: 201 I---------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E +LK PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITW-TNQKIR 291
Query: 390 KLFSGDPL--FAHVK 402
K F + F H+K
Sbjct: 292 KTFVQRNMFEFKHIK 306
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 111/315 (35%), Gaps = 70/315 (22%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+++ M G+ IY+T I +++E+
Sbjct: 58 TEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDF---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKI + + G +KDC+ KV L +
Sbjct: 108 ------------------------RKITVDKKGET---NFFTSQMIKDCMKKVVPLNLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA I ++ Y N + + D++
Sbjct: 141 TVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDIL 200
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ +E ++ D E + L E+VE G
Sbjct: 201 I---------SESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E +LK PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITW-TNQKIR 291
Query: 390 KLFSGDPL--FAHVK 402
K F + F H+K
Sbjct: 292 KTFVQRNMFEFKHIK 306
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/298 (19%), Positives = 113/298 (37%), Gaps = 71/298 (23%)
Query: 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFY 150
S ID VL+S P + + LP+ + G SA +Y TE R+G L M Y QF
Sbjct: 53 STIDAVLLSHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTM---------YDQFL 103
Query: 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEE 210
++ S ++++ + ++ ++ G G
Sbjct: 104 SRKQVSDFDLFTLDDIDSAFQNVIRLTYSQNYHLSGKG---------------------- 141
Query: 211 ACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQG-SDLI 269
GI +I +G +G W I+ ++ Y A+D+++R + + +
Sbjct: 142 ---EGI-VIAPHVAGHMLGGSIWRITKDGEDVIY----------AVDYNHRKERHLNGTV 187
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWE---ELMNSLSNYDESVEEMEKLAFICSCAIDSV 326
L S + D + +++ + E ++++S + +
Sbjct: 188 LQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKH--------------------L 227
Query: 327 KAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLC 384
+ GG+VL+P++ G L+LL + PIY ++ V+ + Y + EW+
Sbjct: 228 EVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMS 285
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/418 (18%), Positives = 139/418 (33%), Gaps = 113/418 (27%)
Query: 1 MKFTCLCQGGGFNF-PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDS 59
M CL G G C ++ ++G ++FDC + + C +++
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMG----------------CDDHNRY 44
Query: 60 QNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFS 119
N + K D ++ I + + H+ +V LP+ T + G++
Sbjct: 45 PNFSLISKSGDFDNAISC----IIITHFHMDHVG--------------ALPYFTEVCGYN 86
Query: 120 AKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALG 179
IY++ + LM+E+ R++ +
Sbjct: 87 GPIYMSYPTKALSPLMLEDY----------------------------------RRVMVD 112
Query: 180 EDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAK 239
G E H+ +C+ KV + + + L I+A+ +G +GA
Sbjct: 113 RRGEE---ELFTTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGD 169
Query: 240 GNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELM 299
I Y N + + ID+ +L+
Sbjct: 170 AAIVYTGDYNMTTDRHL----------------------GAAKIDRLQL--------DLL 199
Query: 300 NSLSNYDESVE------EMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353
S S Y ++ E E L + C V GG LIP +G +L + +
Sbjct: 200 ISESTYATTIRGSKYPREREFLQAVHKC----VAGGGKALIPSFALGRAQELCMLLDDYW 255
Query: 354 ECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL-FAHVKLIKEKKIH 410
E ++K+PIY S + + Y + W + +EK + +P F +VK IH
Sbjct: 256 ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIH 313
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 74/370 (20%), Positives = 149/370 (40%), Gaps = 85/370 (22%)
Query: 95 IDVVLIS--SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGA 152
I VLIS P+ + GLP+L G +A +Y T ++GQ+ + +L+ +++ +F
Sbjct: 55 ISAVLISHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEF--- 111
Query: 153 EESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEAC 212
Q +++++ A K+ E+
Sbjct: 112 ------QHYSLDDVDM---AFEKV--------------------------------EQVK 130
Query: 213 YNGILIIKAFSSGLDIGA--CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLIL 270
YN +++K SG++ A +I G+ I I+G + + +DF++R
Sbjct: 131 YNQTVVLKG-DSGVNFTAMPAGHMIGGSMWRICRITGEDII--YCVDFNHR--------- 178
Query: 271 YSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDE--SVEEMEKLAFICSCAIDSVKA 328
+D S S DN N L+ + +++ ++ ++ + + + +V+
Sbjct: 179 ----------KDRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQ 228
Query: 329 GGSVLIPINRVGVFLQ---LLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCK 385
G +I I+ G L+ LL+Q+ + + ++S VA ++ + + EW+
Sbjct: 229 KGDCMIVIDTAGRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWM-- 286
Query: 386 QRQEKLFSGDPLFAHVKLIKEKKIHVFPA------VHSPKLLNLASCFLPTGVCGLVPPF 439
EKLF D A K +++ + + SPK++ +S + TG +
Sbjct: 287 --DEKLFRYDSSSARYNPFTLKNVNLVHSHLELIKIRSPKVVLCSSQDMETGFSRELFLD 344
Query: 440 ICFDAGVGII 449
C D G+I
Sbjct: 345 WCADQRNGVI 354
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 105/303 (34%), Gaps = 79/303 (26%)
Query: 108 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167
LPF T M G+ IY+T I +++E+
Sbjct: 75 ALPFFTEMCGYDGPIYMTLPTKAICPILLEDY---------------------------- 106
Query: 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKV------QTLRFGEEACYNGILIIKA 221
RKI + + G +KDC+ KV QT++ EE L IKA
Sbjct: 107 ------RKITVEKKGET---NFFTAQMIKDCMKKVIPVNLHQTIKVDEE------LSIKA 151
Query: 222 FSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTE 281
+ +G +GA + ++ Y N + + D+++ TE
Sbjct: 152 YYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLI---------TE 202
Query: 282 DIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 341
++ D E + L I C V+ GG VLIP+ +G
Sbjct: 203 TTYATTIRDSKRG---------------RERDFLKRIHEC----VEKGGKVLIPVFALGR 243
Query: 342 FLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL-FA 399
+L I + E +L IPIY + +AE+ Y W ++ ++ + F
Sbjct: 244 VQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINWTNQKIKQTFVKRNMFDFK 303
Query: 400 HVK 402
H+K
Sbjct: 304 HIK 306
>sp|Q12102|CFT2_YEAST Cleavage factor two protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CFT2 PE=1 SV=1
Length = 859
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 324 DSVKAG----GSVLIPINRVGVFLQLLEQI-AIFMECSSL----KIPIYIISSVAEELLA 374
D++K G GSV+IP++ G FL L Q+ + E + + ++P+ I+S L
Sbjct: 232 DTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLT 291
Query: 375 YTNTIPEWLC 384
Y ++ EWL
Sbjct: 292 YAKSMLEWLS 301
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 95 IDVVLIS--SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
I VLIS P+ + GLP+L G +A +Y T ++GQ+ + +++ +++ +F
Sbjct: 55 ISAVLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEF 111
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 303 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 358
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 359 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIK 405
IPIY SS+A++ +A T + + ++++ +P +F H+ +K
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLK 312
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 303 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 358
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 359 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIK 405
IPIY SS+A++ +A T + + ++++ +P +F H+ +K
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLK 312
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 303 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 358
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 359 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIK 405
IPIY SS+A++ +A T + + ++++ +P +F H+ +K
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLK 312
>sp|P09257|GB_VZVD Envelope glycoprotein B OS=Varicella-zoster virus (strain Dumas)
GN=gB PE=1 SV=2
Length = 931
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 9 GGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQN 61
G GFN P I +V+G + F C + V S P+ FY+++ E + S++
Sbjct: 38 GSGFNGPGVFITSVTGVWLCFLCIFSMFVTAVVSVSPSSFYESLQVEPTQSED 90
>sp|Q4JR05|GB_VZVO Envelope glycoprotein B OS=Varicella-zoster virus (strain Oka
vaccine) GN=gB PE=1 SV=2
Length = 931
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 9 GGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQN 61
G GFN P I +V+G + F C + V S P+ FY+++ E + S++
Sbjct: 38 GSGFNGPGVFITSVTGVWLCFLCIFSMFVTAVVSVSPSSFYESLQVEPTQSED 90
>sp|Q9GPS6|PIMT_DICDI Probable protein-L-isoaspartate O-methyltransferase
OS=Dictyostelium discoideum GN=pcmA PE=3 SV=1
Length = 316
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 225 GLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDID 284
LDIG+ + ++ G++ +G H + R+I+ + LDST +D
Sbjct: 129 ALDIGSGSGYVTACLGHLMGCTGRVIGVEHIPELIERSIES--------IKRLDSTL-LD 179
Query: 285 QSSF--SDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVF 342
+ F D W++L + ++E ++ + ID +K GG +++P+ + F
Sbjct: 180 RIQFLVGDGIKGWKQLKYDIIYLGAAIESLQ----VARELIDQLKNGGRIVMPVGKSNDF 235
Query: 343 LQLL 346
+L+
Sbjct: 236 HELM 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,862,276
Number of Sequences: 539616
Number of extensions: 7508389
Number of successful extensions: 16915
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 16827
Number of HSP's gapped (non-prelim): 67
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)