Query 012717
Match_columns 458
No_of_seqs 200 out of 1496
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1782 Predicted metal-depend 100.0 4.1E-64 8.8E-69 502.7 25.5 343 2-452 182-536 (637)
2 KOG1138 Predicted cleavage and 100.0 2.3E-62 4.9E-67 488.5 24.1 407 1-451 1-424 (653)
3 KOG1137 mRNA cleavage and poly 100.0 1.9E-62 4.1E-67 494.1 17.4 339 2-455 15-362 (668)
4 KOG1136 Predicted cleavage and 100.0 6E-61 1.3E-65 458.8 25.2 348 1-456 4-357 (501)
5 TIGR03675 arCOG00543 arCOG0054 100.0 2.6E-58 5.6E-63 495.7 33.3 346 1-454 175-532 (630)
6 KOG1135 mRNA cleavage and poly 100.0 1.1E-56 2.4E-61 462.4 26.7 336 2-452 3-354 (764)
7 COG1236 YSH1 Predicted exonucl 100.0 9.9E-52 2.1E-56 428.3 28.8 329 1-454 1-335 (427)
8 TIGR00649 MG423 conserved hypo 99.9 2.5E-25 5.4E-30 232.0 27.2 251 1-379 1-264 (422)
9 COG0595 mRNA degradation ribon 99.8 3.2E-18 6.9E-23 181.0 23.1 257 1-384 9-277 (555)
10 PF10996 Beta-Casp: Beta-Casp 99.7 3.7E-18 8.1E-23 148.4 3.5 112 342-453 1-117 (126)
11 PRK11244 phnP carbon-phosphoru 99.7 6.1E-16 1.3E-20 150.4 12.3 160 1-273 1-186 (250)
12 TIGR02651 RNase_Z ribonuclease 99.6 1.1E-14 2.3E-19 145.1 11.0 166 2-272 1-228 (299)
13 TIGR03307 PhnP phosphonate met 99.5 3.8E-14 8.2E-19 136.7 11.3 147 14-273 26-176 (238)
14 PRK05184 pyrroloquinoline quin 99.5 7.3E-14 1.6E-18 139.5 13.0 126 90-273 76-220 (302)
15 TIGR02649 true_RNase_BN ribonu 99.5 4.7E-14 1E-18 141.0 10.8 166 3-273 1-231 (303)
16 PRK02113 putative hydrolase; P 99.5 1E-13 2.2E-18 134.8 12.7 167 1-273 1-191 (252)
17 PRK00055 ribonuclease Z; Revie 99.4 1.7E-13 3.8E-18 133.9 7.2 87 1-133 2-99 (270)
18 TIGR02108 PQQ_syn_pqqB coenzym 99.4 1.9E-12 4.1E-17 129.2 10.1 124 90-273 75-220 (302)
19 PRK00685 metal-dependent hydro 99.3 3.3E-11 7.1E-16 115.1 15.0 150 1-272 1-164 (228)
20 smart00849 Lactamase_B Metallo 99.3 9.3E-12 2E-16 113.4 7.9 140 12-250 3-145 (183)
21 PRK04286 hypothetical protein; 99.2 4.6E-11 1E-15 119.2 12.1 194 1-273 1-210 (298)
22 PF12706 Lactamase_B_2: Beta-l 99.2 1.5E-11 3.2E-16 113.9 6.7 121 93-273 28-155 (194)
23 COG1234 ElaC Metal-dependent h 99.1 6.6E-10 1.4E-14 110.5 11.1 86 1-132 2-98 (292)
24 PRK11921 metallo-beta-lactamas 99.0 1.5E-09 3.1E-14 112.6 10.3 97 90-250 65-165 (394)
25 PRK02126 ribonuclease Z; Provi 98.9 8.2E-09 1.8E-13 104.5 13.3 46 91-136 44-94 (334)
26 PF00753 Lactamase_B: Metallo- 98.9 7.2E-09 1.6E-13 94.1 10.0 145 12-251 3-149 (194)
27 PRK05452 anaerobic nitric oxid 98.9 9.2E-09 2E-13 109.0 10.2 99 90-250 67-169 (479)
28 PRK11709 putative L-ascorbate 98.7 4.3E-07 9.3E-12 92.6 15.3 118 91-272 106-249 (355)
29 TIGR02650 RNase_Z_T_toga ribon 98.7 4.2E-07 9E-12 88.8 13.7 124 92-272 38-207 (277)
30 COG1237 Metal-dependent hydrol 98.6 1.7E-07 3.7E-12 89.6 7.6 87 1-130 1-96 (259)
31 PF13483 Lactamase_B_3: Beta-l 98.5 1.1E-06 2.4E-11 79.6 10.1 67 202-272 62-135 (163)
32 TIGR03413 GSH_gloB hydroxyacyl 98.4 1.2E-06 2.6E-11 85.2 10.3 84 94-250 43-129 (248)
33 COG0426 FpaA Uncharacterized f 98.3 1.9E-06 4.1E-11 87.5 9.3 130 13-250 34-168 (388)
34 TIGR00361 ComEC_Rec2 DNA inter 98.3 5.2E-06 1.1E-10 91.7 13.1 158 2-272 441-606 (662)
35 PRK11539 ComEC family competen 98.3 3.8E-06 8.2E-11 94.1 11.5 80 2-125 502-583 (755)
36 PLN02469 hydroxyacylglutathion 98.3 6.7E-06 1.5E-10 80.4 11.0 89 93-250 45-138 (258)
37 PRK10241 hydroxyacylglutathion 98.1 9.1E-06 2E-10 79.2 9.2 75 1-126 1-78 (251)
38 COG0491 GloB Zn-dependent hydr 98.1 1.5E-05 3.3E-10 75.8 10.2 46 202-250 124-170 (252)
39 PLN02398 hydroxyacylglutathion 98.1 2.7E-05 5.9E-10 78.5 12.3 88 93-251 120-210 (329)
40 COG1235 PhnP Metal-dependent h 98.0 2.7E-06 5.9E-11 83.7 2.9 40 92-133 60-101 (269)
41 COG2220 Predicted Zn-dependent 97.9 0.00033 7.2E-09 68.3 15.4 67 201-272 101-180 (258)
42 COG2248 Predicted hydrolase (m 97.9 0.00043 9.3E-09 66.0 14.7 37 1-37 1-37 (304)
43 COG2333 ComEC Predicted hydrol 97.9 0.00014 3E-09 72.1 12.1 60 15-117 54-115 (293)
44 KOG1361 Predicted hydrolase in 97.8 0.00028 6.1E-09 73.6 13.9 117 94-278 112-232 (481)
45 PLN02962 hydroxyacylglutathion 97.7 0.00022 4.9E-09 69.4 10.5 31 94-125 61-93 (251)
46 KOG2121 Predicted metal-depend 97.7 7.1E-06 1.5E-10 88.0 -0.1 54 215-273 594-648 (746)
47 PF02112 PDEase_II: cAMP phosp 97.2 0.0038 8.3E-08 63.1 12.0 36 216-251 176-219 (335)
48 KOG0813 Glyoxylase [General fu 96.4 0.011 2.3E-07 57.6 7.9 46 204-250 95-142 (265)
49 PF14597 Lactamase_B_5: Metall 94.6 0.028 6E-07 51.5 2.9 117 13-248 21-137 (199)
50 PF13691 Lactamase_B_4: tRNase 92.9 0.16 3.5E-06 38.5 4.0 23 14-36 11-34 (63)
51 KOG1137 mRNA cleavage and poly 92.3 0.37 8E-06 51.1 7.1 100 1-139 151-259 (668)
52 KOG3592 Microtubule-associated 90.8 0.16 3.5E-06 55.1 2.6 61 4-114 41-103 (934)
53 COG5212 PDE1 Low-affinity cAMP 62.8 17 0.00036 35.8 5.6 108 93-250 111-234 (356)
54 KOG3798 Predicted Zn-dependent 62.4 58 0.0012 31.8 9.0 35 217-251 198-242 (343)
55 PRK11188 rrmJ 23S rRNA methylt 49.5 17 0.00038 34.1 3.4 41 316-356 145-185 (209)
56 COG0293 FtsJ 23S rRNA methylas 42.2 61 0.0013 30.6 5.8 39 318-356 141-179 (205)
57 cd03770 SR_TndX_transposase Se 38.2 1.9E+02 0.0042 25.0 8.1 67 324-392 62-138 (140)
58 KOG4736 Uncharacterized conser 38.1 77 0.0017 31.5 5.9 23 90-112 121-145 (302)
59 TIGR00438 rrmJ cell division p 32.1 90 0.0019 28.4 5.2 40 315-354 125-164 (188)
60 KOG2321 WD40 repeat protein [G 30.6 24 0.00051 38.1 1.1 65 360-444 9-81 (703)
61 PRK10664 transcriptional regul 26.9 1.1E+02 0.0025 24.6 4.3 27 312-338 22-48 (90)
62 KOG0814 Glyoxylase [General fu 26.3 1.5E+02 0.0032 27.5 5.2 42 205-249 100-142 (237)
63 TIGR00537 hemK_rel_arch HemK-r 23.6 1.2E+02 0.0027 27.2 4.5 37 315-351 119-155 (179)
64 PRK00377 cbiT cobalt-precorrin 23.5 1.2E+02 0.0027 27.8 4.5 34 318-351 127-160 (198)
65 TIGR00988 hip integration host 22.2 1.2E+02 0.0027 24.3 3.7 26 313-338 24-49 (94)
66 PRK05253 sulfate adenylyltrans 21.7 4.2E+02 0.0091 26.5 8.1 65 316-381 14-81 (301)
67 COG2927 HolC DNA polymerase II 21.1 1.8E+02 0.004 25.8 4.7 37 317-353 17-53 (144)
68 PHA02770 hypothetical protein; 20.9 63 0.0014 24.4 1.5 24 432-455 24-48 (81)
69 PF04898 Glu_syn_central: Glut 20.8 3.8E+02 0.0082 26.7 7.4 68 312-379 138-214 (287)
70 TIGR00091 tRNA (guanine-N(7)-) 20.3 1.6E+02 0.0035 27.0 4.6 36 317-352 113-148 (194)
No 1
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=4.1e-64 Score=502.66 Aligned_cols=343 Identities=20% Similarity=0.268 Sum_probs=285.1
Q ss_pred EEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcc
Q 012717 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (458)
Q Consensus 2 kl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (458)
++|+|||. .|||+||+||++.+.+||||||++.+.. . .++.|++
T Consensus 182 Rvt~LGg~-~EVGRSa~lv~T~eSrVLlDcG~n~a~~--------------------------------~---~~~~Pyl 225 (637)
T COG1782 182 RVTALGGF-REVGRSALLVSTPESRVLLDCGVNVAGN--------------------------------G---EDAFPYL 225 (637)
T ss_pred EEEeeccc-hhccceeEEEecCCceEEEeccccCCCC--------------------------------c---cccCccc
Confidence 68999999 5999999999999999999999997630 0 1236776
Q ss_pred cccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 012717 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (458)
Q Consensus 82 ~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~ 159 (458)
+.|. +.+..+|||+|||| ||||.||+|++ +||+||||||.||++|.-+++.|++.+.+.
T Consensus 226 ~vpE----~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~k-------------- 286 (637)
T COG1782 226 DVPE----FQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEK-------------- 286 (637)
T ss_pred cccc----ccccccceEEEeecccccccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHh--------------
Confidence 6552 45568999999999 99999999998 799999999999999999999999987652
Q ss_pred chhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeC
Q 012717 160 WMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238 (458)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~ 238 (458)
+|.. -|+ ..||++++.+..+++|++..++..++++|||+|||+||||+.++.++
T Consensus 287 ---------------------eg~~----ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIG 341 (637)
T COG1782 287 ---------------------EGGE----PPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIG 341 (637)
T ss_pred ---------------------cCCC----CCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEec
Confidence 1111 256 89999999999999999999999999999999999999999998886
Q ss_pred C--eeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHH
Q 012717 239 K--GNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLA 316 (458)
Q Consensus 239 ~--~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~ 316 (458)
+ .+|+||||+........+..-..++.++.||+| +|| |.+ +..+ .++++ ..+
T Consensus 342 dGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimE---sTY---Gg~------~d~q------------~~R~e--aE~ 395 (637)
T COG1782 342 DGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIME---STY---GGR------DDVQ------------PPREE--AEK 395 (637)
T ss_pred CCceeEEEecccccceeeecChhhccCcchhheeee---ecc---CCc------cccC------------ccHHH--HHH
Confidence 4 799999999865422222222346789999999 787 543 2222 22233 446
Q ss_pred HHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhh-cC
Q 012717 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-SG 394 (458)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~~ 394 (458)
+|++.|.+|+++||+||||+||+||+||++..|++++.++.++ +|||+ ++|..++++++..|+|||+...|+.++ .+
T Consensus 396 ~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYl-DGMI~EatAIhtaYPEyL~~~lr~~I~~~g 474 (637)
T COG1782 396 ELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYL-DGMIWEATAIHTAYPEYLNKELRERIFHEG 474 (637)
T ss_pred HHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceee-eeeeeehhhhhhcCHHhhhHHHHHHHhcCC
Confidence 7999999999999999999999999999999999999999998 99996 679999999999999999999999998 48
Q ss_pred CCCCCceeeeec----cccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCeEE-EEE
Q 012717 395 DPLFAHVKLIKE----KKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGII-TLY 452 (458)
Q Consensus 395 ~~pF~~~~~~~~----~~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~~~-~~~ 452 (458)
+|||....|.+- .+-.+..+ ..|+||+|+||||++|++=.++-.++-|++|-|| -+|
T Consensus 475 ~NPF~se~f~~V~~~~~r~~i~~~-~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgY 536 (637)
T COG1782 475 ENPFLSEIFKRVEGSDERQEIIES-DEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGY 536 (637)
T ss_pred CCCccccceeecCChhHHHHHhcC-CCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEe
Confidence 999976655322 12444444 4899999999999999999999999999999954 555
No 2
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.3e-62 Score=488.45 Aligned_cols=407 Identities=32% Similarity=0.523 Sum_probs=352.7
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccc---cccccC-ccchhhh--cccCCCCcccc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYK---AICKEN-SDSQNRQ--KVEKPLDANDL 74 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~---~~~~~~-~~~~~~~--~~~~~~~~~~l 74 (458)
|+.|+.+..+ +-+|.++++...|||+|||++.+.+++|+|.|.+-++ +.|+.. .+++++. ++.++++.+.+
T Consensus 1 M~~t~~sv~~---t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvf 77 (653)
T KOG1138|consen 1 MEGTIGSVSS---TYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVF 77 (653)
T ss_pred CceEEEeecc---CCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceE
Confidence 7888887753 7899999999999999999999999999999865554 455555 2233222 34566677777
Q ss_pred ccccCcccccccccccCCCcccEEEecCCCCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012717 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (458)
Q Consensus 75 ~~~~p~~~~~~~~~~~d~~~IDaVlISHaDH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~ 154 (458)
.+..|++..| ..+.+|.++||+||||++..+.||||++++.||.|+||+|+||+++|+++|+|.+.+.+++ ++.
T Consensus 78 vesppe~~l~-~t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~-----p~~ 151 (653)
T KOG1138|consen 78 VESPPEFTLP-ATHLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERF-----PKA 151 (653)
T ss_pred EcCCchhccc-hhhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhc-----ccc
Confidence 7777777654 5578999999999999999999999999999999999999999999999999999888752 455
Q ss_pred CCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCch--HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceE
Q 012717 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC--IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN 232 (458)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~ 232 (458)
++.+.|+++...+..|+++.++ .++..|+++ .+||+.|+++++.+.|.|++++.|.+.+|+.+|||.+|||+
T Consensus 152 ~S~~~Wk~k~~~~~lpsplk~~------~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsn 225 (653)
T KOG1138|consen 152 SSAPLWKKKLDSELLPSPLKKA------VFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSN 225 (653)
T ss_pred ccchhhhhhhhhhhcCCCchhh------ccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccc
Confidence 6668899886666677776653 245689999 99999999999999999999999999999999999999999
Q ss_pred EEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHH
Q 012717 233 WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEM 312 (458)
Q Consensus 233 ~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~ 312 (458)
|.|...++++-|+||++..+.|+.++|+..|+.+|+||+.++++.+ +.+. .
T Consensus 226 W~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~------------tanp---------------d-- 276 (653)
T KOG1138|consen 226 WLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLP------------TANP---------------D-- 276 (653)
T ss_pred eEEecCCcceEEEecCcccccCCccccccccccccEEEEecccccc------------cCCc---------------c--
Confidence 9999999999999999999999999999999999999999877664 1111 0
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhh
Q 012717 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (458)
Q Consensus 313 erl~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~ 391 (458)
+...+||..|..|++++|+||+|++++|.+.||++.|.+..+..++. +|||++||+|+..+++.++..|||+.++|+++
T Consensus 277 ~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkv 356 (653)
T KOG1138|consen 277 EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKV 356 (653)
T ss_pred chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccce
Confidence 12457999999999999999999999999999999999999999886 99999999999999999999999999999999
Q ss_pred hcCCCCCCceeeeeccccccCCC--------CCCCcEEEecCCCCCCCCCCCCCCeeeecCCCeEEEE
Q 012717 392 FSGDPLFAHVKLIKEKKIHVFPA--------VHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITL 451 (458)
Q Consensus 392 ~~~~~pF~~~~~~~~~~l~~~~~--------~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~~~~~ 451 (458)
|.++.||+|..++++++++.+++ +..||||.++-.+|-.|-.--.-.+|-.+++|.+|-+
T Consensus 357 ylpe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~t 424 (653)
T KOG1138|consen 357 YLPEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFT 424 (653)
T ss_pred eccCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEe
Confidence 99999999999999999988875 4699999999999988887666677888999986643
No 3
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.9e-62 Score=494.06 Aligned_cols=339 Identities=21% Similarity=0.336 Sum_probs=288.1
Q ss_pred EEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcc
Q 012717 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (458)
Q Consensus 2 kl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (458)
+|++||+|+ |||+|||+||++|.+||+|||.+++. +. .++.|||
T Consensus 15 ~~~pLGag~-EVGRSC~ile~kGk~iMld~gvhpay----------------------------------sg-~aslpf~ 58 (668)
T KOG1137|consen 15 KFTPLGAGN-EVGRSCHILEYKGKTIMLDCGVHPAY----------------------------------SG-MASLPFY 58 (668)
T ss_pred EEEECCCCc-ccCceEEEEEecCeEEEeccccCccc----------------------------------cc-cccccch
Confidence 699999985 99999999999999999999999873 11 3468999
Q ss_pred cccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 012717 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (458)
Q Consensus 82 ~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~ 159 (458)
+. +|.+.||.++|||+ ||+++|||++++..|+|++|||+||+++.+.+|.|+.+.... +.+
T Consensus 59 d~------vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~-----s~~------ 121 (668)
T KOG1137|consen 59 DE------VDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNR-----SGD------ 121 (668)
T ss_pred hh------cccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcceEeeec-----cCc------
Confidence 75 89999999999999 999999999999999999999999999999999998754321 110
Q ss_pred chhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeC
Q 012717 160 WMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238 (458)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~ 238 (458)
+ .-+ .+|+.++++++.+++|+|.++++ +++++++.|||++|+|+|.+++.
T Consensus 122 ------------------------~----~Ly~e~dl~~s~dKie~idfhe~~ev~-gIkf~p~~aGhVlgacMf~veia 172 (668)
T KOG1137|consen 122 ------------------------D----RLYTEGDLMESMDKIETIDFHETVEVN-GIKFWPYHAGHVLGACMFMVEIA 172 (668)
T ss_pred ------------------------c----ccccchhHHHhhhhheeeeeccccccC-CeEEEeeccchhhhheeeeeeec
Confidence 0 012 78999999999999999999995 69999999999999999999999
Q ss_pred CeeEEEecCCCCC-CCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHHH
Q 012717 239 KGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAF 317 (458)
Q Consensus 239 ~~~i~ytgD~~~~-~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~~ 317 (458)
+-+|+||||++.. .||.......+ .+.|++|.| ||| |. ..| + .+.+|.++
T Consensus 173 gv~lLyTGd~sreeDrhl~aae~P~-~~~dvli~e---sty---gv--------~~h------------~--~r~~re~r 223 (668)
T KOG1137|consen 173 GVRLLYTGDYSREEDRHLIAAEMPP-TGPDVLITE---STY---GV--------QIH------------E--PREEREGR 223 (668)
T ss_pred eEEEEeccccchhhcccccchhCCC-CCccEEEEE---eee---eE--------Eec------------C--chHHhhhh
Confidence 9999999999865 46654433332 368999999 676 31 111 1 23346678
Q ss_pred HHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCC-C-cccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhcCC
Q 012717 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS-L-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 395 (458)
Q Consensus 318 l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~-l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~ 395 (458)
|...|..++.+||.||||+||+||+||||.+|+++|.... + ++|||+.|++|++++..|++|+.-|++.+|++... .
T Consensus 224 lt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~-~ 302 (668)
T KOG1137|consen 224 LTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSAL-R 302 (668)
T ss_pred hhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhcc-C
Confidence 9999999999999999999999999999999999999884 3 49999999999999999999999999999987654 5
Q ss_pred CC--CCceeeeeccccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCC-eEEEEEEee
Q 012717 396 PL--FAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGV-GIITLYLFL 455 (458)
Q Consensus 396 ~p--F~~~~~~~~~~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~-~~~~~~~~~ 455 (458)
|| |.|+...++.+ -|++. +|+|++|+||||++|.||..+..||.|++| +||+||..-
T Consensus 303 Npfifk~vs~L~~~D--~f~D~-gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Ve 362 (668)
T KOG1137|consen 303 NPFIFKHVSILRTGD--WFDDE-GPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVE 362 (668)
T ss_pred CceEeeccccccccc--ccccc-CCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceec
Confidence 56 56766666654 44565 999999999999999999999999999999 699999863
No 4
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=6e-61 Score=458.79 Aligned_cols=348 Identities=22% Similarity=0.307 Sum_probs=280.1
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++||+|+ +||+||.|+.++|.+||+|||++.+.. |.+ |.+|++.+...-+
T Consensus 4 i~v~pLGAGQ-dvGrSCilvsi~Gk~iM~DCGMHMG~n--------------------D~r-----RfPdFSyI~~~g~- 56 (501)
T KOG1136|consen 4 IKVTPLGAGQ-DVGRSCILVSIGGKNIMFDCGMHMGFN--------------------DDR-----RFPDFSYISKSGR- 56 (501)
T ss_pred ceEEeccCCc-ccCceEEEEEECCcEEEEecccccccC--------------------ccc-----cCCCceeecCCCC-
Confidence 6899999995 899999999999999999999998730 011 2334333211111
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
+ ...||+|+|||+ ||||+|||+.+-.||+||||||.||++++.++|+|+.+++-.
T Consensus 57 ---------~-~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd------------- 113 (501)
T KOG1136|consen 57 ---------F-TDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVD------------- 113 (501)
T ss_pred ---------c-ccceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhcc-------------
Confidence 1 357999999999 999999999998899999999999999999999998765431
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~ 237 (458)
+.|+. + -| .+||.+|++++.++..+|+++++.+++|++|.|||+||+++|.|..
T Consensus 114 ---------------------~kGe~--n--~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikv 168 (501)
T KOG1136|consen 114 ---------------------RKGES--N--FFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKV 168 (501)
T ss_pred ---------------------ccCcc--c--ceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEe
Confidence 11111 1 22 8999999999999999999999989999999999999999999999
Q ss_pred CCeeEEEecCCCCC-CCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHH
Q 012717 238 AKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLA 316 (458)
Q Consensus 238 ~~~~i~ytgD~~~~-~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~ 316 (458)
+...|+||||++.. .||....-...+ ..|+||.| |||. +++ +++++-+||
T Consensus 169 Gd~svvYTGDYnmTpDrHLGaA~id~~-rpdlLIsE---STYa------tti-----------------Rdskr~rER-- 219 (501)
T KOG1136|consen 169 GDQSVVYTGDYNMTPDRHLGAAWIDKC-RPDLLISE---STYA------TTI-----------------RDSKRCRER-- 219 (501)
T ss_pred cceeEEEecCccCCcccccchhhhccc-cCceEEee---ccce------eee-----------------ccccchhHH--
Confidence 99999999999865 467655444433 47999999 7861 111 222233333
Q ss_pred HHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhcCC-
Q 012717 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD- 395 (458)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~- 395 (458)
+|++.+.+++.+||+||||+||+||+|||..+|+.+|++.++++|||+.+++++++..||+.+..|-++..++++...+
T Consensus 220 dFLk~VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNm 299 (501)
T KOG1136|consen 220 DFLKKVHECVARGGKVLIPVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNM 299 (501)
T ss_pred HHHHHHHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhccCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999988776432
Q ss_pred CCCCceeeeeccccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEEeee
Q 012717 396 PLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYLFLR 456 (458)
Q Consensus 396 ~pF~~~~~~~~~~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~~~~ 456 (458)
..|.|++-. +-.... ..+|.|++|+||||.+|+|=-.+--||-|+.|- |+-||-..-
T Consensus 300 fdfkhiKpf---d~~~~~-~pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~G 357 (501)
T KOG1136|consen 300 FDFKHIKPF---DRSYIE-APGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAG 357 (501)
T ss_pred cccccCChh---hhhhhc-CCCCEEEEcCCcccccccchHHHHhhCCCccceEeecCceecc
Confidence 235555321 111222 259999999999999999988888899999887 777886543
No 5
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=2.6e-58 Score=495.68 Aligned_cols=346 Identities=18% Similarity=0.239 Sum_probs=277.7
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++|||+ +|||+|||||+.++.+||||||++++.. . ....|+
T Consensus 175 m~i~~LGg~-~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~--------------------------------~---~~~~p~ 218 (630)
T TIGR03675 175 VRVTALGGF-REVGRSALLLSTPESRILLDCGVNVGAN--------------------------------G---DNAYPY 218 (630)
T ss_pred EEEEEEecC-CccCCCEEEEEECCCEEEEECCCCcccc--------------------------------c---hhhccc
Confidence 799999998 5999999999999999999999986410 0 001233
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
+..+ .+++.+||+|||||+ ||+|+||+|++ +||++|||||+||++++..++.|+++++..
T Consensus 219 l~~~----~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~------------- 280 (630)
T TIGR03675 219 LDVP----EFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVAQR------------- 280 (630)
T ss_pred cccc----CCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCCceeecHHHHHHHHHHHHHHHHHHHh-------------
Confidence 2211 135678999999999 99999999997 589999999999999999999998765431
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~ 237 (458)
++. -.++ .+|++.++.++.+++|++++++.+++++++++|||++|||+|.++.
T Consensus 281 ----------------------~g~----~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i 334 (630)
T TIGR03675 281 ----------------------EGK----KPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHI 334 (630)
T ss_pred ----------------------cCC----CCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEE
Confidence 000 0134 8999999999999999999999878999999999999999999887
Q ss_pred CC--eeEEEecCCCCCC-CCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHH
Q 012717 238 AK--GNIAYISGSNFAS-GHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEK 314 (458)
Q Consensus 238 ~~--~~i~ytgD~~~~~-~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~er 314 (458)
++ .+|+||||++... ++..+.. ..+.++|+||+| +|| |++ +..+ .+ +.++
T Consensus 335 ~dg~~~IvYTGD~~~~~~~ll~~a~-~~~~~vD~LI~E---STY---g~~------~~~~------------~~--r~~~ 387 (630)
T TIGR03675 335 GDGLYNIVYTGDFKYEKTRLLDPAV-NKFPRVETLIME---STY---GGR------DDYQ------------PS--REEA 387 (630)
T ss_pred CCCCEEEEEeCCCCCCCCcCccchh-hcCCCCCEEEEe---Ccc---CCC------CCCC------------CC--HHHH
Confidence 43 6999999998653 3322221 234579999999 676 433 1111 11 2234
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhh-
Q 012717 315 LAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF- 392 (458)
Q Consensus 315 l~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~- 392 (458)
.++|++.|.+|+++||+||||+|++||+|||+++|+++|+++.++ +|||++| |+.+++++++.++|||+++.++.++
T Consensus 388 e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~ 466 (630)
T TIGR03675 388 EKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFH 466 (630)
T ss_pred HHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhh
Confidence 567999999999999999999999999999999999999999885 9999976 9999999999999999999888776
Q ss_pred cCCCCC--Cceeeeeccc-cccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEEe
Q 012717 393 SGDPLF--AHVKLIKEKK-IHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYLF 454 (458)
Q Consensus 393 ~~~~pF--~~~~~~~~~~-l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~~ 454 (458)
.+++|| ++.+.+++.+ ...+....+||||+|+||||++|++..+..-+|-|++|. |+|||-.
T Consensus 467 ~~~npf~~~~~~~v~~~~~~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa 532 (630)
T TIGR03675 467 EGENPFLSEIFVRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQA 532 (630)
T ss_pred cCCCcccCCceEEeCCHHHHHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCC
Confidence 567887 4455566653 444444568999999999999999999999999999999 7788853
No 6
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=462.35 Aligned_cols=336 Identities=24% Similarity=0.388 Sum_probs=276.5
Q ss_pred EEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcc
Q 012717 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (458)
Q Consensus 2 kl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (458)
+++.++++. +-+..||+|+++|.+||+||||+... +.+.+....|
T Consensus 3 ~l~~~~g~~-de~~~cyllqiD~~~iLiDcGwd~~f--------------------------------~~~~i~~l~~-- 47 (764)
T KOG1135|consen 3 KLTTLCGAT-DEGPLCYLLQIDGVRILIDCGWDESF--------------------------------DMSMIKELKP-- 47 (764)
T ss_pred eEEeecccc-CCCcceEEEEEcCeEEEEeCCCcchh--------------------------------ccchhhhhhc--
Confidence 455566554 44888999999999999999999752 1111111122
Q ss_pred cccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 012717 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (458)
Q Consensus 82 ~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~ 159 (458)
-+.+||||||||+ -|+|||||++.++|+++|||||.|+..||++.|.|++..+.+
T Consensus 48 ---------~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~~-------------- 104 (764)
T KOG1135|consen 48 ---------VIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHGN-------------- 104 (764)
T ss_pred ---------ccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhcccc--------------
Confidence 2679999999999 599999999999999999999999999999999998743211
Q ss_pred chhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCC---cEEEEEecCCCCCCceEEEE
Q 012717 160 WMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDIGACNWII 235 (458)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g---~l~i~~~~aGH~lGsa~~~I 235 (458)
...+.-+ .+||+.||++|.+++|+|++.+.| |++|+||+|||++|++.|.|
T Consensus 105 -------------------------~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI 159 (764)
T KOG1135|consen 105 -------------------------VGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKI 159 (764)
T ss_pred -------------------------cccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEE
Confidence 0011233 899999999999999999999974 59999999999999999999
Q ss_pred EeCCeeEEEecCCCCCCCCCCcCCCC---CCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHH
Q 012717 236 SGAKGNIAYISGSNFASGHAMDFDYR---AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEM 312 (458)
Q Consensus 236 ~~~~~~i~ytgD~~~~~~~~~~~d~~---~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~ 312 (458)
...+++|+| +.+|||. +|+++- ++ + -+||+.+||+.+|. +. .+.+++
T Consensus 160 ~k~~E~ivY----------avd~NHkKe~HLNG~~---l~---~-----l~RPsllITda~~~-------~~--~~~~rk 209 (764)
T KOG1135|consen 160 SKVGEDIVY----------AVDFNHKKERHLNGCS---LS---G-----LNRPSLLITDANHA-------LY--SQPRRK 209 (764)
T ss_pred EecCceEEE----------EEecccchhcccCCcc---cc---c-----cCCcceEEeccccc-------cc--cccchh
Confidence 999999999 4455553 455542 22 2 24899999998873 11 123556
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhC--CCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHH
Q 012717 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS--SLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQE 389 (458)
Q Consensus 313 erl~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~--~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~ 389 (458)
.|.++|++.|.++|++||+|||||+..||++||..+|+++|.+. ++. +||++.|+.+.++++|++.+.|||+++.-+
T Consensus 210 kRDe~f~d~v~~~L~~~G~VlipVDtAgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k 289 (764)
T KOG1135|consen 210 KRDEQFLDTVLKTLRSGGNVLIPVDTAGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSK 289 (764)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEecccHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHH
Confidence 68899999999999999999999999999999999999999987 565 999999999999999999999999999877
Q ss_pred hhhc-CCCC--CCceeeeeccc-cccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCeEEEEE
Q 012717 390 KLFS-GDPL--FAHVKLIKEKK-IHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLY 452 (458)
Q Consensus 390 ~~~~-~~~p--F~~~~~~~~~~-l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~~~~~~ 452 (458)
.+-. ..+| |.|+++|.+.. +..++. +||||+|+...|++|||+-.+.-||.|+.|.||.++
T Consensus 290 ~fe~~r~NpFefrhi~l~~~~~dlsr~p~--gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~ 354 (764)
T KOG1135|consen 290 MFEEARNNPFEFRHITLCHSLQDLSRVPP--GPKVVLASVPDLECGFSRDLFLEWASDPRNLILLTE 354 (764)
T ss_pred hhhhccCCcceeeeeeeecCHHHHhcCCC--CCeEEEeeccchhcchhHHHHHHHhcCCcceEEEec
Confidence 6543 4567 58888888874 777774 799999999999999999999999999999888765
No 7
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-52 Score=428.25 Aligned_cols=329 Identities=19% Similarity=0.243 Sum_probs=269.3
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++.++|++. +|+++|++|++++.+||+|||++++.. + ...|+
T Consensus 1 ~~~~~~g~~~-evg~s~~~l~~~~~~il~D~G~~~~~~-------------------------------~-----~~~p~ 43 (427)
T COG1236 1 MTLRFLGAAR-EVGRSCVLLETGGTRILLDCGLFPGDP-------------------------------S-----PERPL 43 (427)
T ss_pred CceecccccC-CcCcEEEEEEECCceEEEECCCCcCcC-------------------------------C-----ccCCC
Confidence 7899999985 999999999999999999999998630 0 01344
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
.. | .+ ++|+|+|||+ ||+|+||+++.+ +|++|||||.||++++++++.|.++.+.. +.
T Consensus 44 ~~-~-----~~--~vDavllTHaHlDH~g~lp~l~~~-~~~~~v~aT~~T~~l~~~~l~d~~~~~~~------~~----- 103 (427)
T COG1236 44 LP-P-----FP--KVDAVLLTHAHLDHIGALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAEG------PD----- 103 (427)
T ss_pred CC-C-----CC--CcCEEEeccCchhhhcccHHHHHh-ccCCceeeccCHHHHHHHHHHHHHhhhcC------CC-----
Confidence 22 1 23 8999999999 999999999985 68999999999999999999999876531 00
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~ 237 (458)
. .++ ..|++.+++++++++|+|++++.+ ++|++|+|||++|||+|.++.
T Consensus 104 ----------------------------~-~~~~~~d~~~~~~~~~~~~yg~~~~v~~-~~v~~~~AGHilGsa~~~le~ 153 (427)
T COG1236 104 ----------------------------K-PPYSEEDVERVPDLIRPLPYGEPVEVGG-VKVTFYNAGHILGSAAILLEV 153 (427)
T ss_pred ----------------------------C-CCCchhHHHhhHhhEEEecCCCceEeee-EEEEEecCCCccceeEEEEEe
Confidence 0 133 899999999999999999999964 999999999999999999999
Q ss_pred CCeeEEEecCCCCC-CCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHH
Q 012717 238 AKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLA 316 (458)
Q Consensus 238 ~~~~i~ytgD~~~~-~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~ 316 (458)
++.+|+||||.+.. +++..+...... +|+||+| +|| |++ .+ .++++.++
T Consensus 154 ~~~~ilytGD~~~~~~~l~~~a~~~~~--~DvLI~E---sTY---g~~------~~--------------~~r~~~e~-- 203 (427)
T COG1236 154 DGGRILYTGDVKRRKDRLLNGAELPPC--IDVLIVE---STY---GDR------LH--------------PNRDEVER-- 203 (427)
T ss_pred CCceEEEEeccCCCcCCCCCccccCCC--CcEEEEe---ccc---CCc------cC--------------CCHHHHHH--
Confidence 99999999999854 344434433322 6999999 787 432 12 22233333
Q ss_pred HHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhcCCC
Q 012717 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP 396 (458)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~ 396 (458)
.|++.|.+++.+||+||||+|++||+||||.+|+.+|.++ ++|||++|++|+.+..+++.+.+|+++...+.....
T Consensus 204 ~f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-- 279 (427)
T COG1236 204 RFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR-- 279 (427)
T ss_pred HHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh--
Confidence 4999999999999999999999999999999999999988 899999999999999999999999998887766543
Q ss_pred CCCceeeeeccc-cccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEEe
Q 012717 397 LFAHVKLIKEKK-IHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYLF 454 (458)
Q Consensus 397 pF~~~~~~~~~~-l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~~ 454 (458)
|..++ +.+ ........+|.||+|+++|++.|.+..+...++.|++|- ++++|.-
T Consensus 280 -~~~v~---~~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~ 335 (427)
T COG1236 280 -FRFVE---SRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQA 335 (427)
T ss_pred -ccccc---chhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEccccc
Confidence 44333 332 234444568999999999999999999999999999988 7788753
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.94 E-value=2.5e-25 Score=232.02 Aligned_cols=251 Identities=14% Similarity=0.123 Sum_probs=171.5
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
+++++|||. +|+|++||+|+.++..||+|||....... . ... +.+ .|.
T Consensus 1 ~~i~~lGG~-~eiG~n~~ll~~~~~~iliD~G~~~~~~~-~-------------------------~g~--~~~---iPd 48 (422)
T TIGR00649 1 VKIFALGGL-GEIGKNMYVVEIDDDVFIFDAGILFPEDA-M-------------------------LGV--DGV---IPD 48 (422)
T ss_pred CEEEEccCC-CccCCeEEEEEECCeEEEEeCCCCCCccc-c-------------------------cCC--ccc---cCC
Confidence 589999998 59999999999999999999998743100 0 000 001 122
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
+... .-...+||+|||||+ ||+|+||+|.+.++ ..|||+|+.|.++.+..+.. . +
T Consensus 49 ~~~l----~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~-~~~Vy~~~~t~~~l~~~~~~------~-----~------- 105 (422)
T TIGR00649 49 FSYL----QENQDKVKGIFITHGHEDHIGAVPYLFHTVG-FPPIYGTPLTIALIKSKIKE------N-----K------- 105 (422)
T ss_pred HHHH----HhccccCCEEEECCCChHHhCcHHHHHHhCC-CCeEEeCHHHHHHHHHHHHh------c-----C-------
Confidence 1100 012468999999999 99999999987432 36999999998754422210 0 0
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCC-CCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~-lGsa~~~I~~ 237 (458)
+ . . ...++.+.+++++++.++++|++++++|. +||+++.++.
T Consensus 106 ----------~--------------~--~-----------~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~ 148 (422)
T TIGR00649 106 ----------L--------------N--V-----------RTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHT 148 (422)
T ss_pred ----------C--------------C--C-----------CCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEe
Confidence 0 0 0 01367889999999954699999999995 7999999999
Q ss_pred CCeeEEEecCCCCCCCCCC--cCCCC-----CCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHH
Q 012717 238 AKGNIAYISGSNFASGHAM--DFDYR-----AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVE 310 (458)
Q Consensus 238 ~~~~i~ytgD~~~~~~~~~--~~d~~-----~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~ 310 (458)
++.+++||||+........ ..|.. .-+++|+||+| +|+ +.+| .... .
T Consensus 149 ~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~E---sT~---~~~~-----~~~~---------------~ 202 (422)
T TIGR00649 149 PLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISD---STN---VENP-----GFTP---------------S 202 (422)
T ss_pred CCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEEC---CCC---CCCC-----CCCC---------------C
Confidence 8899999999875432221 22221 12468999999 565 2121 1000 1
Q ss_pred HHHHHHHHHHHHHHHH-HcCCeEEEecCc--hhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHHHhh
Q 012717 311 EMEKLAFICSCAIDSV-KAGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTI 379 (458)
Q Consensus 311 ~~erl~~l~~~I~~tl-~~gG~VLIPv~a--~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~ 379 (458)
+. .+.+.+.+++ +.+|.|++|+|+ ++|+|+++.+..++ ..+|++.+.+..++++.+..+
T Consensus 203 e~----~~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~ 264 (422)
T TIGR00649 203 EA----KVLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL 264 (422)
T ss_pred HH----HHHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc
Confidence 11 1233444555 468999999999 99999999987664 468999988888888877653
No 9
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.81 E-value=3.2e-18 Score=180.96 Aligned_cols=257 Identities=15% Similarity=0.144 Sum_probs=176.0
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++|||- +|+|.+||++++++.-|++|||+.... .. . -+-++. .|.
T Consensus 9 i~i~~lGG~-~EiGkN~~vve~~~~i~i~D~G~~fp~-------~~---------------------~-~gvDli--IPd 56 (555)
T COG0595 9 IKIFALGGV-GEIGKNMYVVEYGDDIIILDAGLKFPE-------DD---------------------L-LGVDLI--IPD 56 (555)
T ss_pred eEEEEecCh-hhhccceEEEEECCcEEEEECccccCc-------cc---------------------c-ccccEE--ecC
Confidence 579999998 599999999999999999999998631 00 0 001111 232
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
+.-. .=+..+|++|||||+ ||+|+||||..+.+ ..|||+|+.|..|.+.-+++.-
T Consensus 57 ~~yl----~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~-~~piy~s~lt~~Li~~k~~~~~------------------ 113 (555)
T COG0595 57 FSYL----EENKDKVKGIFLTHGHEDHIGALPYLLKQVL-FAPIYASPLTAALIKEKLKEHG------------------ 113 (555)
T ss_pred hHHh----hhccccceEEEecCCchhhccchHHHHhcCC-cCceecCHhhHHHHHHHHHHhc------------------
Confidence 2100 013469999999999 99999999998543 3999999999997665443210
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCC-CCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~-lGsa~~~I~~ 237 (458)
.+ .-...++.++.+..+++ +.+.|++++.-|. ++|+++.|+.
T Consensus 114 ------~~------------------------------~~~~~~~ev~~~~~i~~-~~~~v~f~~vtHSIPds~g~~i~T 156 (555)
T COG0595 114 ------LF------------------------------KNENELHEVKPGSEIKF-GSFEVEFFPVTHSIPDSLGIVIKT 156 (555)
T ss_pred ------cc------------------------------cccCceEEeCCCCeEEe-CcEEEEEEeecccCccceEEEEEC
Confidence 00 00125789999999999 7899999999999 7899999999
Q ss_pred CCeeEEEecCCCCCCCCCC--cCCCCC-----CCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHH
Q 012717 238 AKGNIAYISGSNFASGHAM--DFDYRA-----IQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVE 310 (458)
Q Consensus 238 ~~~~i~ytgD~~~~~~~~~--~~d~~~-----l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~ 310 (458)
+...|+||||+-...+... +.|... =+++++||+| ||- ..+| +.. ..
T Consensus 157 p~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~Lisd---sTn---a~~p-----g~t---------------~S 210 (555)
T COG0595 157 PEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISD---STN---AENP-----GFT---------------PS 210 (555)
T ss_pred CCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeC---Ccc---cCCC-----CCC---------------CC
Confidence 9999999999865432222 122211 1358899998 452 1011 111 12
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEecCc--hhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHHHhhHHhhh
Q 012717 311 EMEKLAFICSCAIDSVKAGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLC 384 (458)
Q Consensus 311 ~~erl~~l~~~I~~tl~~gG~VLIPv~a--~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~ 384 (458)
|.+-.+.+.+.+.++ .|.|++-+|+ ++|+|.++.+-.+. .-++.+.+--..+....++...-|-.
T Consensus 211 E~~v~~~l~~i~~~a---~grVIv~tfaSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg~~~~ 277 (555)
T COG0595 211 ESEVGENLEDIIRNA---KGRVIVTTFASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLGYLKL 277 (555)
T ss_pred HHHHHHHHHHHHHhC---CCcEEEEEchhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcccccC
Confidence 222223344444443 7889999998 77999988765443 47788888888888888887755443
No 10
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.71 E-value=3.7e-18 Score=148.37 Aligned_cols=112 Identities=26% Similarity=0.373 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhCCC--cccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhcCCC-CCCceeeeeccc-cccCCCCCC
Q 012717 342 FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIKEKK-IHVFPAVHS 417 (458)
Q Consensus 342 ~qELl~~L~~~~~~~~l--~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~-pF~~~~~~~~~~-l~~~~~~~~ 417 (458)
+||||++|+++|+++++ ++|||++||+|.+++++|+.+.|||++++++++...+. ||.+++.+++.+ ...++...+
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKSVDESKELNALSG 80 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEESHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecccccccccccCCC
Confidence 69999999999999986 49999999999999999999999999998877765443 798988888764 555554558
Q ss_pred CcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEE
Q 012717 418 PKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYL 453 (458)
Q Consensus 418 p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~ 453 (458)
|+||+|+++||++|+|..+..-+|.|++|- |+|||-
T Consensus 81 p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~ 117 (126)
T PF10996_consen 81 PKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQ 117 (126)
T ss_dssp SEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS-
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCC
Confidence 999999999999999999999999999998 666664
No 11
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.66 E-value=6.1e-16 Score=150.38 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=111.5
Q ss_pred CEEEEecCCCC------------------cC----CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCcc
Q 012717 1 MKFTCLCQGGG------------------FN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSD 58 (458)
Q Consensus 1 mkl~~Lg~~~~------------------~v----~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~ 58 (458)
||+|+||.|++ .+ .++|++|+.++.+||+|||...-
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~---------------------- 58 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDL---------------------- 58 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHH----------------------
Confidence 99999999975 22 36789999999999999995320
Q ss_pred chhhhcccCCCCccccccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHH
Q 012717 59 SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (458)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L 136 (458)
... +++.+||+|||||. ||+++|+.+....+-..+||++..+..+..
T Consensus 59 -------------~~~---------------~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~--- 107 (250)
T PRK11244 59 -------------AER---------------FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD--- 107 (250)
T ss_pred -------------hhc---------------CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHH---
Confidence 000 24568999999999 999999887432233568999987753221
Q ss_pred HHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCc
Q 012717 137 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI 216 (458)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~ 216 (458)
..+. + + . ++-...+.-++.+++ ++
T Consensus 108 --~~~~---------~-----------------------------~---------~------~~~~~~l~~~~~~~~-~~ 131 (250)
T PRK11244 108 --LFKH---------P-----------------------------G---------I------LDFSHPLEPFEPFDL-GG 131 (250)
T ss_pred --HhcC---------c-----------------------------c---------c------cccccccCCCCCeeE-CC
Confidence 1100 0 0 0 000023445677888 57
Q ss_pred EEEEEecCCCCCCceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCC--CCCcEEEEcC
Q 012717 217 LIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAI--QGSDLILYSD 273 (458)
Q Consensus 217 l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l--~~~D~Li~e~ 273 (458)
++|+++++.|..++.+|+|+.++++|+|+||+.... +.....+ .++|+|++|.
T Consensus 132 ~~I~~~~~~H~~~s~g~~i~~~~~~i~ysgDt~~~~----~~~~~~~~~~~~Dlli~e~ 186 (250)
T PRK11244 132 LQVTPLPLNHSKLTFGYLLETAHSRVAYLTDTVGLP----EDTLKFLRNNQPDLLVLDC 186 (250)
T ss_pred EEEEEEeeCCCcceeEEEEecCCeEEEEEcCCCCCC----HHHHHHHhcCCCCEEEEeC
Confidence 999999999999999999999999999999986321 1001111 4799999993
No 12
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.57 E-value=1.1e-14 Score=145.06 Aligned_cols=166 Identities=21% Similarity=0.251 Sum_probs=113.5
Q ss_pred EEEEecCCCCcC----CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccc
Q 012717 2 KFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFA 77 (458)
Q Consensus 2 kl~~Lg~~~~~v----~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (458)
|+++||.+++.+ +.+|++|+.++.+||+|||..... .+..
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~-----------------------------------~l~~- 44 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQR-----------------------------------QMLR- 44 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHH-----------------------------------HHHH-
Confidence 689999986543 368999999999999999976321 1100
Q ss_pred cCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCC-----cceEEEehHHHHHHHHHHHHHHHHHHhhhhhc
Q 012717 78 EPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF-----SAKIYITEAAARIGQLMMEELICMNMEYRQFY 150 (458)
Q Consensus 78 ~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf-----~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~ 150 (458)
. .+++.+||+|||||+ ||++|||.+.....+ ..+||+...+.+.. +........
T Consensus 45 ~----------~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l----~~~~~~~~~----- 105 (299)
T TIGR02651 45 S----------GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFI----ETSLRVSYT----- 105 (299)
T ss_pred c----------CCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHH----HHHHHHccc-----
Confidence 0 134678999999999 999999988753222 35799999887643 222111000
Q ss_pred CCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCC-EEEeCCcEEEEEecCCCCCC
Q 012717 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE-EACYNGILIIKAFSSGLDIG 229 (458)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e-~v~i~g~l~i~~~~aGH~lG 229 (458)
. . . .+ -.++.+..++ .+.. ++++|++++.-|...
T Consensus 106 --~-------~-------------------------~-~~---------~~~~~~~~~~~~~~~-~~~~v~~~~~~H~~~ 140 (299)
T TIGR02651 106 --Y-------L-------------------------N-YP---------IKIHEIEEGGLVFED-DGFKVEAFPLDHSIP 140 (299)
T ss_pred --C-------C-------------------------C-ce---------EEEEEccCCCceEec-CCEEEEEEEcCCCCc
Confidence 0 0 0 00 0345555565 4666 679999999999988
Q ss_pred ceEEEEEeC--------------------------------------------------CeeEEEecCCCCCCCCCCcCC
Q 012717 230 ACNWIISGA--------------------------------------------------KGNIAYISGSNFASGHAMDFD 259 (458)
Q Consensus 230 sa~~~I~~~--------------------------------------------------~~~i~ytgD~~~~~~~~~~~d 259 (458)
+.+|+|+.+ +.+++|+||+... +.-
T Consensus 141 ~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~-----~~~ 215 (299)
T TIGR02651 141 SLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPC-----EEV 215 (299)
T ss_pred eEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCCh-----HHH
Confidence 999999864 3589999998632 111
Q ss_pred CCCCCCCcEEEEc
Q 012717 260 YRAIQGSDLILYS 272 (458)
Q Consensus 260 ~~~l~~~D~Li~e 272 (458)
...++++|+||+|
T Consensus 216 ~~~~~~~dlLi~E 228 (299)
T TIGR02651 216 IEFAKNADLLIHE 228 (299)
T ss_pred HHHHcCCCEEEEE
Confidence 2346789999999
No 13
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.53 E-value=3.8e-14 Score=136.74 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=103.0
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
.++|++|+.++.+||||||+..- ... ++..
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~~-----------------------------------~~~---------------~~~~ 55 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTDL-----------------------------------AER---------------FPPG 55 (238)
T ss_pred cceEEEEEECCcEEEEECCChhH-----------------------------------hhc---------------cCcc
Confidence 57899999999999999996421 000 2456
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+||+|||||. ||+++|+.+....+-+.+||++..|..+. +.... +
T Consensus 56 ~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~-----~~~~~---------~------------------- 102 (238)
T TIGR03307 56 SLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCD-----DLFKH---------P------------------- 102 (238)
T ss_pred CCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHH-----HHhcC---------c-------------------
Confidence 8999999999 99999987754333467899999875321 11100 0
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCCCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA 251 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~~~ 251 (458)
+ +. +....+..++++++ ++++|++.++.|..++.+|+|+.++++++|+||+...
T Consensus 103 ----------~-----~~----------~~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~g~~i~~~~~~i~y~gDt~~~ 156 (238)
T TIGR03307 103 ----------G-----IL----------DFSKPLEAFEPFDL-GGLRVTPLPLVHSKLTFGYLLETDGQRVAYLTDTAGL 156 (238)
T ss_pred ----------c-----cc----------cccccccCCceEEE-CCEEEEEEecCCCCcceEEEEecCCcEEEEEecCCCC
Confidence 0 00 00123566788888 6799999999999999999999999999999998532
Q ss_pred CCCCCcCCCCCC--CCCcEEEEcC
Q 012717 252 SGHAMDFDYRAI--QGSDLILYSD 273 (458)
Q Consensus 252 ~~~~~~~d~~~l--~~~D~Li~e~ 273 (458)
.. .....+ .++|+||+|.
T Consensus 157 ~~----~~~~~~~~~~~D~li~e~ 176 (238)
T TIGR03307 157 PP----DTEAFLKNHPLDVLILDC 176 (238)
T ss_pred CH----HHHHHHhcCCCCEEEEeC
Confidence 11 001112 2699999993
No 14
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.53 E-value=7.3e-14 Score=139.51 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=85.1
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
+++.+||+|||||. ||++|||.|.+ +...+||+++.|.+..+. ... +.+..
T Consensus 76 ~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~~~~l~~----~~~--------~f~~~------------- 128 (302)
T PRK05184 76 LRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAVLEDLST----GFP--------IFNVL------------- 128 (302)
T ss_pred CCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHHHHHHHh----cCC--------ccccc-------------
Confidence 45679999999999 99999999954 557899999998653211 000 00000
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeC--CcEEEEEecCCCC-------------CCceE
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN--GILIIKAFSSGLD-------------IGACN 232 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~--g~l~i~~~~aGH~-------------lGsa~ 232 (458)
..+ ..+ .++.+.-++++++. ++++|++++.-|. ..+.+
T Consensus 129 ------------------~~~--------~~~-~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~g 181 (302)
T PRK05184 129 ------------------DHY--------GGV-QRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIG 181 (302)
T ss_pred ------------------ccc--------cce-eeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEE
Confidence 000 001 34556666777874 3799999999653 56889
Q ss_pred EEEE--eCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcC
Q 012717 233 WIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (458)
Q Consensus 233 ~~I~--~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~ 273 (458)
|+|+ .++++++|++|+.... +.-...++++|+||+|+
T Consensus 182 yri~~~~~g~~~~y~tD~~~~~----~~~~~~~~gaDlli~da 220 (302)
T PRK05184 182 LRIEDRATGKRLFYAPGLAEVT----DALRARLAGADCVLFDG 220 (302)
T ss_pred EEEEecCCCcEEEEECCCCCCC----HHHHHHHhcCCEEEEeC
Confidence 9995 7788999999985321 11124578999999994
No 15
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.52 E-value=4.7e-14 Score=141.03 Aligned_cols=166 Identities=18% Similarity=0.247 Sum_probs=112.6
Q ss_pred EEEecCCCCcC----CCceEEEEEC----CEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccc
Q 012717 3 FTCLCQGGGFN----FPPCHILNVS----GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDL 74 (458)
Q Consensus 3 l~~Lg~~~~~v----~~sc~LLe~~----~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (458)
+++||.+++.+ +.||+|++.+ +.+||+|||..... .+
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~-----------------------------------~l 45 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQH-----------------------------------QL 45 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHH-----------------------------------HH
Confidence 57899886554 3679999985 47999999987431 11
Q ss_pred ccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhccc---C--CcceEEEehHHHHHHHHHHHHHHHHHHhhh
Q 012717 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---G--FSAKIYITEAAARIGQLMMEELICMNMEYR 147 (458)
Q Consensus 75 ~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~---g--f~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~ 147 (458)
.. ..+++.+||+|||||. ||++|||.|.... + -..+||+.+.+.+..+.++. +..
T Consensus 46 ~~-----------~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~----~~~--- 107 (303)
T TIGR02649 46 LH-----------TAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALR----ISG--- 107 (303)
T ss_pred HH-----------hCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHH----hcc---
Confidence 00 0145679999999999 9999999875321 2 23589999998774332221 100
Q ss_pred hhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCC
Q 012717 148 QFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 227 (458)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~ 227 (458)
.| ..+. -.++.+..++.+.. ++++|++++.-|.
T Consensus 108 -----------~~----------------------------~~~~-------~~~~~i~~~~~~~~-~~~~v~~~~~~H~ 140 (303)
T TIGR02649 108 -----------SW----------------------------TDYP-------LEIVEIGAGEILDD-GLRKVTAYPLEHP 140 (303)
T ss_pred -----------cc----------------------------cCCc-------eEEEEcCCCceEec-CCeEEEEEEccCc
Confidence 00 0000 13455556666666 5799999999999
Q ss_pred CCceEEEEEe--------------------------------------------------CCeeEEEecCCCCCCCCCCc
Q 012717 228 IGACNWIISG--------------------------------------------------AKGNIAYISGSNFASGHAMD 257 (458)
Q Consensus 228 lGsa~~~I~~--------------------------------------------------~~~~i~ytgD~~~~~~~~~~ 257 (458)
..+.+|+|+. .+.+|+|+||+... +
T Consensus 141 ~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~-----~ 215 (303)
T TIGR02649 141 LECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPC-----D 215 (303)
T ss_pred cceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCCh-----H
Confidence 9999999985 35789999998631 1
Q ss_pred CCCCCCCCCcEEEEcC
Q 012717 258 FDYRAIQGSDLILYSD 273 (458)
Q Consensus 258 ~d~~~l~~~D~Li~e~ 273 (458)
.....++++|+||+|+
T Consensus 216 ~~~~~~~~adlLi~Ea 231 (303)
T TIGR02649 216 AALDLAKGVDVMVHEA 231 (303)
T ss_pred HHHHHhcCCCEEEEec
Confidence 1224578999999993
No 16
>PRK02113 putative hydrolase; Provisional
Probab=99.52 E-value=1e-13 Score=134.79 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=110.5
Q ss_pred CEEEEecCCCC--cCC------------------CceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccch
Q 012717 1 MKFTCLCQGGG--FNF------------------PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60 (458)
Q Consensus 1 mkl~~Lg~~~~--~v~------------------~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 60 (458)
|++++||.|++ .+. ++|++|+.++.+||+|||.....
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~----------------------- 57 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFRE----------------------- 57 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHH-----------------------
Confidence 99999996532 233 36799999999999999975321
Q ss_pred hhhcccCCCCccccccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcc-cCCcceEEEehHHHHHHHHHHH
Q 012717 61 NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM-EGFSAKIYITEAAARIGQLMME 137 (458)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~-~gf~g~Iy~T~pT~~l~~~~L~ 137 (458)
.+.. .++.+||+|||||. ||++|||.|... .....+||+++.+.+.....+.
T Consensus 58 ------------~l~~-------------~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~ 112 (252)
T PRK02113 58 ------------QMLR-------------LPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMP 112 (252)
T ss_pred ------------HHHh-------------cCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCC
Confidence 1100 13568999999999 999999988531 1235789999987553211100
Q ss_pred HHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcE
Q 012717 138 ELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGIL 217 (458)
Q Consensus 138 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l 217 (458)
. .+... .|.. .. .-+++.+..++++++ +++
T Consensus 113 ----~------~~~~~---------------------------------~~~~-~~-----~~~~~~~~~g~~~~~-~~~ 142 (252)
T PRK02113 113 ----Y------CFVEH---------------------------------SYPG-VP-----NIPLREIEPDRPFLV-NHT 142 (252)
T ss_pred ----e------eeccC---------------------------------CCCC-Cc-----ceeeEEcCCCCCEEE-CCe
Confidence 0 00000 0000 00 014677788889999 579
Q ss_pred EEEEecCCCC-CCceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcC
Q 012717 218 IIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (458)
Q Consensus 218 ~i~~~~aGH~-lGsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~ 273 (458)
+|++++.-|. ..+.+|++ ++++|+||+.... +...+.++++|+||+|+
T Consensus 143 ~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt~~~~----~~~~~~~~~~DlLi~e~ 191 (252)
T PRK02113 143 EVTPLRVMHGKLPILGYRI----GKMAYITDMLTMP----EEEYEQLQGIDVLVMNA 191 (252)
T ss_pred EEEEEEecCCCccEEEEEe----CCEEEccCCCCCC----HHHHHHhcCCCEEEEhh
Confidence 9999999996 45778888 5899999986321 11123467899999994
No 17
>PRK00055 ribonuclease Z; Reviewed
Probab=99.43 E-value=1.7e-13 Score=133.89 Aligned_cols=87 Identities=24% Similarity=0.288 Sum_probs=64.6
Q ss_pred CEEEEecCCCCcC----CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccc
Q 012717 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (458)
Q Consensus 1 mkl~~Lg~~~~~v----~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (458)
||+++||++++.+ +++|++|+.++.+||+|||..... .+..
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~-----------------------------------~l~~ 46 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQR-----------------------------------QLLK 46 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHH-----------------------------------HHHH
Confidence 8999999986422 388999999999999999976321 1100
Q ss_pred ccCcccccccccccCCCcccEEEecCC--CCcchhhhhhccc-----CCcceEEEehHHHHHHH
Q 012717 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME-----GFSAKIYITEAAARIGQ 133 (458)
Q Consensus 77 ~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~-----gf~g~Iy~T~pT~~l~~ 133 (458)
. .+++.+||+|||||. ||++|||.|.... .-..+||+...+.++..
T Consensus 47 -~----------~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~ 99 (270)
T PRK00055 47 -T----------GIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVE 99 (270)
T ss_pred -c----------CCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHH
Confidence 0 135678999999999 9999999887422 12357999988877544
No 18
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.37 E-value=1.9e-12 Score=129.15 Aligned_cols=124 Identities=18% Similarity=0.166 Sum_probs=86.9
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
+++.+||+|||||. ||++||+.|.+ +...|||+++.|.+.. .+. .. ++
T Consensus 75 l~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~~~L----~~~----~~----~~---------------- 124 (302)
T TIGR02108 75 LRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVLQDL----SDN----PI----FN---------------- 124 (302)
T ss_pred CCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHHHHH----HhC----CC----cc----------------
Confidence 57889999999999 99999999964 4578999999987742 110 00 00
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeC----CcEEEEEecCC--------C------CCC
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN----GILIIKAFSSG--------L------DIG 229 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~----g~l~i~~~~aG--------H------~lG 229 (458)
.++ .| . -+.+.+.-++++.+. ++++|++++.- | -..
T Consensus 125 ~~~----------------~~---------~-~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~ 178 (302)
T TIGR02108 125 VLD----------------HW---------N-VRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGD 178 (302)
T ss_pred ccc----------------hh---------h-ccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCC
Confidence 000 00 0 023455666777663 25999999998 5 146
Q ss_pred ceEEEEEeC--CeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcC
Q 012717 230 ACNWIISGA--KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (458)
Q Consensus 230 sa~~~I~~~--~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~ 273 (458)
+++|+|+.+ +++++|++|.+..+ +.-...++++|+||+|+
T Consensus 179 ~~Gy~i~~~~~g~~~~y~tD~g~~~----~~~~~~l~~~d~liida 220 (302)
T TIGR02108 179 TLGLKIEDGTTGKRLFYIPGCAEIT----DDLKARMAGADLVFFDG 220 (302)
T ss_pred cEEEEEEeCCCCcEEEEECCCCCCC----HHHHHHHhCCCEEEEeC
Confidence 889999988 89999999986322 22234578999999995
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.32 E-value=3.3e-11 Score=115.14 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=103.9
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|+++.||. +|++|+.++.+||+||++.-.. . ..+ .
T Consensus 1 m~i~~lG~-------s~~li~~~~~~iLiDP~~~~~~--------------------------------~-~~~----~- 35 (228)
T PRK00685 1 MKITWLGH-------SAFLIETGGKKILIDPFITGNP--------------------------------L-ADL----K- 35 (228)
T ss_pred CEEEEEcc-------eEEEEEECCEEEEECCCCCCCC--------------------------------C-CCC----C-
Confidence 89999995 5999999999999999874210 0 000 0
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
.+..+||+|||||. ||+++++.+.++ .+.+||++..+.+.. ..
T Consensus 36 ---------~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v~~~~~~~~~~----~~-------------------- 80 (228)
T PRK00685 36 ---------PEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATVIANAELANYL----SE-------------------- 80 (228)
T ss_pred ---------hhcCcccEEEeCCCCccccccHHHHHHh--CCCEEEEeHHHHHHH----Hh--------------------
Confidence 11228999999999 999998877653 468999987543211 00
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCC---------
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG--------- 229 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lG--------- 229 (458)
.+ +.+++.++.++++++ ++++|++.++-|...
T Consensus 81 ----------------------~~----------------~~~~~~~~~~~~~~~-~~~~i~~~p~~H~~~~~~~~~~~~ 121 (228)
T PRK00685 81 ----------------------KG----------------VEKTHPMNIGGTVEF-DGGKVKLTPALHSSSFIDEDGITY 121 (228)
T ss_pred ----------------------cC----------------CCceeeccCCCcEEE-CCEEEEEEEEEcCCCCcCCCCccc
Confidence 00 014567778888998 579999999988653
Q ss_pred ---ceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 230 ---ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 230 ---sa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
+.+|+|+.++.+++|+||+...... .......++|++++.
T Consensus 122 ~~~~~g~~i~~~~~~i~~~GDt~~~~~~---~~~~~~~~~D~~~~~ 164 (228)
T PRK00685 122 LGNPTGFVITFEGKTIYHAGDTGLFSDM---KLIGELHKPDVALLP 164 (228)
T ss_pred CCCceEEEEEECCeEEEEecCccchhHH---HHHHHhhCCCEEEEe
Confidence 4899999999999999998642100 000112357988875
No 20
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.27 E-value=9.3e-12 Score=113.45 Aligned_cols=140 Identities=18% Similarity=0.128 Sum_probs=93.1
Q ss_pred cCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccC
Q 012717 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (458)
Q Consensus 12 ~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d 91 (458)
+..++|++++.++..||+|||..... ..+ ...+. ..
T Consensus 3 ~~~~~~~li~~~~~~iliD~g~~~~~----------------------------------~~~-~~l~~---------~~ 38 (183)
T smart00849 3 GVGVNSYLVEGDGGAILIDTGPGEAE----------------------------------DLL-AELKK---------LG 38 (183)
T ss_pred ccceeEEEEEeCCceEEEeCCCChhH----------------------------------HHH-HHHHH---------cC
Confidence 35789999999999999999965320 000 00000 23
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (458)
..+||+|++||. ||++|+|.+.+. ++.+||++..+.+..+..... .. .+.
T Consensus 39 ~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~~~~~~~~~----~~------~~~---------------- 90 (183)
T smart00849 39 PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAELLKDLLKL----GG------ALG---------------- 90 (183)
T ss_pred chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhHHHhccchh----cc------ccC----------------
Confidence 568999999999 999999999875 578999998887533211100 00 000
Q ss_pred hhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEEEeCCeeEEEecCC
Q 012717 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGS 248 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I~~~~~~i~ytgD~ 248 (458)
.+ ......+..+..++++.+. +.+++++. .||..|++.|.++ +.+++|+||.
T Consensus 91 -----------------~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~--~~~vl~~gD~ 143 (183)
T smart00849 91 -----------------AE-------APPPPPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLP--EGKILFTGDL 143 (183)
T ss_pred -----------------cC-------CCCCccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEEC--CCCEEEECCe
Confidence 00 0001245677888999984 45555444 4999999998876 4899999998
Q ss_pred CC
Q 012717 249 NF 250 (458)
Q Consensus 249 ~~ 250 (458)
..
T Consensus 144 ~~ 145 (183)
T smart00849 144 LF 145 (183)
T ss_pred ee
Confidence 64
No 21
>PRK04286 hypothetical protein; Provisional
Probab=99.25 E-value=4.6e-11 Score=119.17 Aligned_cols=194 Identities=16% Similarity=0.044 Sum_probs=107.0
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccc-cCCCCCcccccccccCccchhhhcccCCCCccccccccC
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTV-FSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 79 (458)
||+.+||+++.....+|++|+.++.+||+|+|........ +.|.+. . . ..+....+
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~--------~-----~----------~~~~~~~~ 57 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPI--------E-----L----------ERLEEVRE 57 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcch--------h-----H----------HHHHHHHH
Confidence 8999999975222349999999999999999976432110 111000 0 0 00000000
Q ss_pred cccccccccccCCCcccEEEecCC--CCcchhhhhhccc---CCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012717 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (458)
Q Consensus 80 ~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~---gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~ 154 (458)
. ......+||+|||||. ||++++..+.-.. .+..+||++.+|.... ..+.+.....
T Consensus 58 ~-------i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~~~~---~~~~~~~~~~--------- 118 (298)
T PRK04286 58 K-------ILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIKD---PTENINWSQR--------- 118 (298)
T ss_pred H-------hhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCceecccC---HHHHcCHHHH---------
Confidence 0 0134678999999999 9998765542001 1236788887765210 1110000000
Q ss_pred CCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe-cCCCCCC--ce
Q 012717 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIG--AC 231 (458)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~-~aGH~lG--sa 231 (458)
+.. ..+...++. +.....+.-++.+.+ |+++|++. +..|... +.
T Consensus 119 -----~~~--------------------------~~~~~~v~~-~~~~~~~~~g~~~~i-g~~~V~~~~~v~H~~~~~~~ 165 (298)
T PRK04286 119 -----RRA--------------------------PRFLKAVKD-IAKKIEYADGKTFRF-GGTTIEFSPPVPHGADGSKL 165 (298)
T ss_pred -----hhH--------------------------HhHHHHHHh-cCCceEECCCCEEEE-CCEEEEEeccCCCCCCCCcc
Confidence 000 000111211 112344556788888 67999966 7788532 44
Q ss_pred E----EEEEeCCeeEEEecCCCC-CCCCCCcCCCCCCC--CCcEEEEcC
Q 012717 232 N----WIISGAKGNIAYISGSNF-ASGHAMDFDYRAIQ--GSDLILYSD 273 (458)
Q Consensus 232 ~----~~I~~~~~~i~ytgD~~~-~~~~~~~~d~~~l~--~~D~Li~e~ 273 (458)
+ ++|+.++++++|+||++. .... -...+. ++|+|++++
T Consensus 166 Gy~i~~ri~~gg~~~~~~gDt~~~~~~~----~~~~l~~~d~dlLi~~~ 210 (298)
T PRK04286 166 GYVIMVRISDGDESFVFASDVQGPLNDE----AVEFILEKKPDVVIIGG 210 (298)
T ss_pred ceEEEEEEEeCCEEEEEECCCCCCCCHH----HHHHHhcCCCCEEEeCC
Confidence 4 456788999999999972 2110 011232 899999973
No 22
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.22 E-value=1.5e-11 Score=113.92 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=86.2
Q ss_pred CcccEEEecCC--CCcchhhhhhccc-CCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRME-GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~-gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (458)
.+||+|||||. ||+.+||.|.... ....+||++..+.+..+.. ...... .+ +.
T Consensus 28 ~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~---~~~~~~----~~---------~~-------- 83 (194)
T PF12706_consen 28 PDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREY---KFGILD----LY---------PE-------- 83 (194)
T ss_dssp GCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHH---HHTHHT----TC---------CT--------
T ss_pred CCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhh---hccccc----cc---------cc--------
Confidence 48999999999 9999988877632 1123999999988854422 000000 00 00
Q ss_pred hhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceE----EEEEeCCeeEEEe
Q 012717 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN----WIISGAKGNIAYI 245 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~----~~I~~~~~~i~yt 245 (458)
. .-..+..+.-++.+++ ++++|++.++.|..+++. |+|+.++++|+|+
T Consensus 84 ------------~---------------~~~~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~ 135 (194)
T PF12706_consen 84 ------------E---------------DNFDIIEISPGDEFEI-GDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYS 135 (194)
T ss_dssp ------------T---------------SGEEEEEECTTEEEEE-TTEEEEEEEEESSSCCEEECCEEEEEETTEEEEEE
T ss_pred ------------c---------------cceeEEEeccCceEEe-ceEEEEEEeccccccccccCceEEEecCCcceEEe
Confidence 0 0024566777778888 679999999999999988 9999999999999
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcEEEEcC
Q 012717 246 SGSNFASGHAMDFDYRAIQGSDLILYSD 273 (458)
Q Consensus 246 gD~~~~~~~~~~~d~~~l~~~D~Li~e~ 273 (458)
||+.. +.+.++++|++|+|.
T Consensus 136 gD~~~--------~~~~~~~~D~li~~~ 155 (194)
T PF12706_consen 136 GDTNY--------DFEELKNIDLLILEC 155 (194)
T ss_dssp TSSSS--------CHHHHTTBSEEEEEB
T ss_pred eccch--------hhhhhccCCEEEEeC
Confidence 99974 123347899999993
No 23
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.08 E-value=6.6e-10 Score=110.48 Aligned_cols=86 Identities=27% Similarity=0.329 Sum_probs=63.0
Q ss_pred CEEEEecCCCCcCC----CceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccc
Q 012717 1 MKFTCLCQGGGFNF----PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (458)
Q Consensus 1 mkl~~Lg~~~~~v~----~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (458)
|++++||.+++.++ .+.++|+.++.++|+|||-.... ++..
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~-----------------------------------~l~~ 46 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQH-----------------------------------QLLR 46 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHH-----------------------------------HHHH
Confidence 89999999975443 67899999999999999977531 1100
Q ss_pred ccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCC---cc--eEEEehHHHHHH
Q 012717 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF---SA--KIYITEAAARIG 132 (458)
Q Consensus 77 ~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf---~g--~Iy~T~pT~~l~ 132 (458)
..+.+.+||+|+|||. ||+.|||-|+....| .. .||.....++..
T Consensus 47 -----------~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~ 98 (292)
T COG1234 47 -----------AGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFV 98 (292)
T ss_pred -----------hcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhh
Confidence 1134668999999999 999999977653333 33 688877777543
No 24
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.00 E-value=1.5e-09 Score=112.64 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=71.9
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
+++.+||+|++||. ||+|+++.|.+.++ ..+||+++.+.++. .... ..
T Consensus 65 ~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~~l----~~~~----------~~--------------- 114 (394)
T PRK11921 65 IDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAKSL----KGHY----------HQ--------------- 114 (394)
T ss_pred cCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHHHH----HHHh----------CC---------------
Confidence 35678999999999 99999999987532 68999999876532 1100 00
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCC--CCCCceEEEEEeCCeeEEEe
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG--LDIGACNWIISGAKGNIAYI 245 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aG--H~lGsa~~~I~~~~~~i~yt 245 (458)
.| +++.++.++.+++ |+.+++++.++ |..|++.+.++ ..+++|+
T Consensus 115 -------------------~~------------~~~~v~~g~~l~l-G~~~l~~i~tP~~H~p~~~~~y~~--~~~vLFs 160 (394)
T PRK11921 115 -------------------DW------------NFVVVKTGDRLEI-GSNELIFIEAPMLHWPDSMFTYLT--GDNILFS 160 (394)
T ss_pred -------------------CC------------ceEEeCCCCEEee-CCeEEEEEeCCCCCCCCceEEEEc--CCCEEEe
Confidence 01 2456788899999 67788888544 99999988774 5789999
Q ss_pred cCCCC
Q 012717 246 SGSNF 250 (458)
Q Consensus 246 gD~~~ 250 (458)
||.-+
T Consensus 161 gD~fG 165 (394)
T PRK11921 161 NDAFG 165 (394)
T ss_pred cCccc
Confidence 99743
No 25
>PRK02126 ribonuclease Z; Provisional
Probab=98.95 E-value=8.2e-09 Score=104.46 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=36.0
Q ss_pred CCCcccEEEecCC--CCcchhhhhhccc-C--CcceEEEehHHHHHHHHHH
Q 012717 91 NVSFIDVVLISSP--MGMLGLPFLTRME-G--FSAKIYITEAAARIGQLMM 136 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g~LP~L~~~~-g--f~g~Iy~T~pT~~l~~~~L 136 (458)
++.+||+|||||. ||++|+|.|.+.. + -..+||+.+.|.++.+..+
T Consensus 44 ~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~ 94 (334)
T PRK02126 44 ELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKL 94 (334)
T ss_pred CCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHh
Confidence 3568999999999 9999999998742 1 1248999999998655433
No 26
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.90 E-value=7.2e-09 Score=94.07 Aligned_cols=145 Identities=17% Similarity=0.038 Sum_probs=86.0
Q ss_pred cCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccC
Q 012717 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (458)
Q Consensus 12 ~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d 91 (458)
+.+.+||+++.++..||+|||...... ... .... ...+
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~---------------------------------~~~---~~~~------~~~~ 40 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFA---------------------------------KEL---ELAL------LGIS 40 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHH---------------------------------HHH---HHHH------HHHT
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhh---------------------------------HHh---hhhH------hhcc
Confidence 346899999999999999999986420 000 0000 1146
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (458)
..+|++|++||+ ||+|+++.+.+..+ ...+++....................
T Consensus 41 ~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 94 (194)
T PF00753_consen 41 GEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAKAIRPPDRDSASRRG------------------------- 94 (194)
T ss_dssp GGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCeEEEEECcccccccccccccccccc-eeeeeccccccccccccccccccccc-------------------------
Confidence 789999999999 99999999998532 34444444443332222221110000
Q ss_pred hhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCCC
Q 012717 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
.............+..... +........+|.-|++.+.+...+++++|+||..
T Consensus 95 --------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~ 147 (194)
T PF00753_consen 95 --------------------------PAVPPPPIIDEDEDDLEIG-GDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLL 147 (194)
T ss_dssp --------------------------HHHESEEEEEETTTEEEEE-TTEEEEEEESSSSSTTEEEEEETTTTEEEEETTS
T ss_pred --------------------------cccccccceeeeccccccc-ccccccceeccccCCcceEEEeCCCcEEEeeeEe
Confidence 0000112222333333332 2344455566666777777777999999999987
Q ss_pred CC
Q 012717 250 FA 251 (458)
Q Consensus 250 ~~ 251 (458)
..
T Consensus 148 ~~ 149 (194)
T PF00753_consen 148 FS 149 (194)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 27
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.86 E-value=9.2e-09 Score=109.04 Aligned_cols=99 Identities=11% Similarity=-0.025 Sum_probs=73.0
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
+++.+||+|++||. ||+|++|.|.++++ ..+||+|+.+.++. .... .
T Consensus 67 ~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~~l----~~~~----------~---------------- 115 (479)
T PRK05452 67 IDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAIDSI----NGHH----------H---------------- 115 (479)
T ss_pred CCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHHHH----HHhh----------c----------------
Confidence 35678999999999 99999999987532 68999999987532 1100 0
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC--CCCCCceEEEEEeCCeeEEEe
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYI 245 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a--GH~lGsa~~~I~~~~~~i~yt 245 (458)
.+ . .+++.++.++.+++.++.+++++.+ +|..|+..+.+. ..+++||
T Consensus 116 -~~----------------~------------~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLFs 164 (479)
T PRK05452 116 -HP----------------E------------WNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAVLFS 164 (479)
T ss_pred -CC----------------c------------CeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCEEEe
Confidence 00 0 1357789999999954566777766 599999988875 6799999
Q ss_pred cCCCC
Q 012717 246 SGSNF 250 (458)
Q Consensus 246 gD~~~ 250 (458)
||.-+
T Consensus 165 gD~fG 169 (479)
T PRK05452 165 NDAFG 169 (479)
T ss_pred ccccc
Confidence 99643
No 28
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.68 E-value=4.3e-07 Score=92.58 Aligned_cols=118 Identities=19% Similarity=0.133 Sum_probs=78.4
Q ss_pred CCCcccEEEecCC--CCcc--hhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHh
Q 012717 91 NVSFIDVVLISSP--MGML--GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g--~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (458)
++..||+|||||. ||+. .+..|.++.+-.+++++...+.++ +.+ +|
T Consensus 106 ~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~----~~~-----------~G--------------- 155 (355)
T PRK11709 106 AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDL----WIG-----------WG--------------- 155 (355)
T ss_pred HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHH----HHh-----------cC---------------
Confidence 4678999999999 9994 455565533335678887776442 110 01
Q ss_pred hhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCC-----------CC-------
Q 012717 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-----------DI------- 228 (458)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH-----------~l------- 228 (458)
++ -.+++.++.++.+++ ++++|++.+|-| ..
T Consensus 156 --vp----------------------------~~rv~~v~~Ge~i~i-g~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~ 204 (355)
T PRK11709 156 --VP----------------------------KERCIVVKPGDVVKV-KDIKIHALDSFDRTALVTLPADGKAAGGVLPD 204 (355)
T ss_pred --CC----------------------------cceEEEecCCCcEEE-CCEEEEEEeccccccccccccccccccccccc
Confidence 00 026789999999999 679999998833 21
Q ss_pred ----CceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 229 ----GACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 229 ----Gsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
.+++|+|+.++.+|.|+||+....... .. .... ++|++++.
T Consensus 205 d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~-~i-~~~~-~iDvall~ 249 (355)
T PRK11709 205 DMDRRAVNYLFKTPGGNIYHSGDSHYSNYFA-KH-GNDH-QIDVALGS 249 (355)
T ss_pred cCCcceEEEEEEeCCeEEEEeCCCCccHHHH-HH-HhcC-CCCEEEec
Confidence 257999999999999999987421000 00 0111 58998885
No 29
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.65 E-value=4.2e-07 Score=88.82 Aligned_cols=124 Identities=11% Similarity=-0.011 Sum_probs=78.3
Q ss_pred CCcccEEEecCC--CCcchhhhhhc-c-cC---Ccc-eEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhh
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTR-M-EG---FSA-KIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 163 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~-~-~g---f~g-~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
...++.|||||+ ||+|+||.++- + .. -+. .||.-+.+.+. .++++++.+.++..
T Consensus 38 ~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~----ve~~~~~~~~~~~~-------------- 99 (277)
T TIGR02650 38 VAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAA----EEETSEFIKAANED-------------- 99 (277)
T ss_pred HhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHH----HHHHHHHHHHhhhh--------------
Confidence 457999999999 99999966554 2 11 122 39988887774 44433333221100
Q ss_pred hHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCC---cEEEEEecCCCCC---CceEEEEE-
Q 012717 164 EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDI---GACNWIIS- 236 (458)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g---~l~i~~~~aGH~l---Gsa~~~I~- 236 (458)
.+ . + -.+..++-++.+-+.. .+.|.++...|.. -|.+|.|.
T Consensus 100 --~~-------------~--------~---------~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~ 147 (277)
T TIGR02650 100 --LF-------------F--------F---------FNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEE 147 (277)
T ss_pred --hc-------------c--------C---------cccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEE
Confidence 00 0 0 0235566777777763 4899999999996 34455443
Q ss_pred -------------------------------eCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 237 -------------------------------GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 237 -------------------------------~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
....+|+|+||+... +.+...+||+||.|
T Consensus 148 ~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~-------~~~~a~~adlLIhE 207 (277)
T TIGR02650 148 RRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAA-------DDEEEEGGEELIHE 207 (277)
T ss_pred EeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCC-------ChHHhcCCCEEEEe
Confidence 012689999999632 23556799999999
No 30
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=89.62 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=63.9
Q ss_pred CEEEEecCCCCc-------CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccc
Q 012717 1 MKFTCLCQGGGF-------NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAND 73 (458)
Q Consensus 1 mkl~~Lg~~~~~-------v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (458)
||+|+|-..... --|-+.|+|.++.+||+|.|.....++ .|
T Consensus 1 mkitvl~dn~~~~~~~f~a~hGfS~LVE~~~~riLFDtG~~~~~ll--------------------------------~N 48 (259)
T COG1237 1 MKITVLVDNRAGARPGFRAEHGFSALVEDEGTRILFDTGTDSDVLL--------------------------------HN 48 (259)
T ss_pred CeEEEEEcCCCccCCcccccCceEEEEEcCCeEEEEeCCCCcHHHH--------------------------------HH
Confidence 677777654200 026689999999999999998754322 01
Q ss_pred cccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHH
Q 012717 74 LIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAAR 130 (458)
Q Consensus 74 l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~ 130 (458)
+ .+..+|+.+||+|+|||- ||+||||++.+...-..|||+++-.+.
T Consensus 49 a-----------~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 49 A-----------RLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred H-----------HHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 1 012378899999999999 999999999885445679999987755
No 31
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.45 E-value=1.1e-06 Score=79.59 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=43.4
Q ss_pred ceeeCCCCEEEeCCcEEEEEecCCCC-------CCceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 202 VQTLRFGEEACYNGILIIKAFSSGLD-------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 202 i~~v~y~e~v~i~g~l~i~~~~aGH~-------lGsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
++.+.-++.+++ ++++|+..++-|. .+.++|.|+.++.+|++.||..... .......+.++|++++-
T Consensus 62 ~~vv~~~~~~~~-~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~---~~~~~~~~~~vDvl~~p 135 (163)
T PF13483_consen 62 IHVVAPGGEYRF-GGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPP---DDEQLKQLGKVDVLFLP 135 (163)
T ss_dssp SEEE-TTEEEEC-TTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S------HHHHHHH-S-SEEEEE
T ss_pred cEEEccceEEEE-eeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCC---CHHHHhcccCCCEEEec
Confidence 556666778888 5799998888774 4478999999999999999986321 11112335689999975
No 32
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.43 E-value=1.2e-06 Score=85.23 Aligned_cols=84 Identities=13% Similarity=0.237 Sum_probs=62.0
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
++++||+||. ||+||++.|.+.+ ..+||++..+. + .
T Consensus 43 ~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~~------------~-~--------------------------- 80 (248)
T TIGR03413 43 TLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEER------------I-P--------------------------- 80 (248)
T ss_pred eeeEEEeCCCCccccCCHHHHHHHC--CCeEEeccccc------------C-C---------------------------
Confidence 5899999998 9999999998754 48899876430 0 0
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEEEeCCeeEEEecCCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 250 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I~~~~~~i~ytgD~~~ 250 (458)
...+.+.-++.+++ ++.+++.+. .||..|+..+.+. ..+++|+||+..
T Consensus 81 ----------------------------~~~~~v~~g~~~~~-g~~~i~v~~tpGHT~g~i~~~~~--~~~~lftGDtl~ 129 (248)
T TIGR03413 81 ----------------------------GITHPVKDGDTVTL-GGLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDTLF 129 (248)
T ss_pred ----------------------------CCcEEeCCCCEEEE-CCEEEEEEECCCCCcccEEEEEC--CCCEEEEcCccc
Confidence 01234566777888 456666554 5899999988886 468999999864
No 33
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.33 E-value=1.9e-06 Score=87.55 Aligned_cols=130 Identities=13% Similarity=0.049 Sum_probs=92.1
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
++-++||+. ++..+|+|-+-.... +.+..+... .+|+
T Consensus 34 ttyNSYLI~-~~k~aLID~~~~~~~----------------------------------~~~l~~l~~--------~id~ 70 (388)
T COG0426 34 TTYNSYLIV-GDKTALIDTVGEKFF----------------------------------DEYLENLSK--------YIDP 70 (388)
T ss_pred ceeeeEEEe-CCcEEEECCCCcchH----------------------------------HHHHHHHHh--------hcCh
Confidence 578999999 999999998765321 111111111 2789
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (458)
.+||.|+++|. ||+|+||.|.+... +++|+||.+.+++.+.+..+
T Consensus 71 k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~~L~~~~~~-------------------------------- 117 (388)
T COG0426 71 KEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAARFLKGFYHD-------------------------------- 117 (388)
T ss_pred hcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHHHHHHhcCC--------------------------------
Confidence 99999999999 99999999998655 89999999887754322110
Q ss_pred hhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC--CCCCCceEEEEEeC-CeeEEEecC
Q 012717 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGA-KGNIAYISG 247 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a--GH~lGsa~~~I~~~-~~~i~ytgD 247 (458)
+ ..++.++-|+.+++. +=+++|.+| =|-+|+. +++. ..+|+||+|
T Consensus 118 -------------------~---------~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m---~TYd~~~kILFS~D 165 (388)
T COG0426 118 -------------------P---------EWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTM---FTYDPEDKILFSCD 165 (388)
T ss_pred -------------------c---------cceeecCCCCEeccC-CcEEEEEeCCCCCCCCce---eEeecCCcEEEccc
Confidence 0 016788899999994 655655554 5667764 3433 478999999
Q ss_pred CCC
Q 012717 248 SNF 250 (458)
Q Consensus 248 ~~~ 250 (458)
..+
T Consensus 166 ~fG 168 (388)
T COG0426 166 AFG 168 (388)
T ss_pred ccc
Confidence 764
No 34
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.32 E-value=5.2e-06 Score=91.75 Aligned_cols=158 Identities=10% Similarity=0.148 Sum_probs=95.2
Q ss_pred EEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcc
Q 012717 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (458)
Q Consensus 2 kl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (458)
+++++--|+ |.|.+++.++..+|+|||-.... ++.++ ..+ .|+.
T Consensus 441 ~v~~lDVGq----Gdaili~~~~~~iLIDtG~~~~~-------------------~~~~~----------~~l---~p~L 484 (662)
T TIGR00361 441 QVDMLDVGQ----GLAMFIGANGKGILYDTGEPWRE-------------------GSLGE----------KVI---IPFL 484 (662)
T ss_pred EEEEEecCC----ceEEEEEECCeEEEEeCCCCCCC-------------------CCccH----------HHH---HHHH
Confidence 456666553 77999999999999999964321 00000 112 4554
Q ss_pred cccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 012717 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (458)
Q Consensus 82 ~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~ 159 (458)
+. ..+. ||+|+|||. ||+||++.+.+++. -.+||..... . .. +
T Consensus 485 ~~------~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~-v~~i~~~~~~--------~------~~-----~-------- 529 (662)
T TIGR00361 485 TA------KGIK-LEALILSHADQDHIGGAEIILKHHP-VKRLVIPKGF--------V------EE-----G-------- 529 (662)
T ss_pred HH------cCCC-cCEEEECCCchhhhCcHHHHHHhCC-ccEEEeccch--------h------hC-----C--------
Confidence 32 3455 999999999 99999999987532 2356654320 0 00 0
Q ss_pred chhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCC------CCCCceEE
Q 012717 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG------LDIGACNW 233 (458)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aG------H~lGsa~~ 233 (458)
...+.+.-++.+++ ++++++...-+ .--.||.+
T Consensus 530 ----------------------------------------~~~~~~~~G~~~~~-~~~~~~vL~P~~~~~~~~N~~S~vl 568 (662)
T TIGR00361 530 ----------------------------------------VAIEECKRGDVWQW-QGLQFHVLSPEAPDPASKNNHSCVL 568 (662)
T ss_pred ----------------------------------------CceEecCCCCEEeE-CCEEEEEECCCCccCCCCCCCceEE
Confidence 01223345556666 45666655422 12468999
Q ss_pred EEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 234 IISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 234 ~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
.+++++.++++|||......... .+....-++|+|.+.
T Consensus 569 ~i~~~~~~~L~tGD~~~~~E~~l-~~~~~~l~~dvLk~~ 606 (662)
T TIGR00361 569 WVDDGGNSWLLTGDLEAEGEQEV-MRVFPNIKADVLQVG 606 (662)
T ss_pred EEEECCeeEEEecCCCHHHHHHH-HhcccCcCccEEEeC
Confidence 99999999999999875321000 010011257888876
No 35
>PRK11539 ComEC family competence protein; Provisional
Probab=98.29 E-value=3.8e-06 Score=94.12 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=54.5
Q ss_pred EEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcc
Q 012717 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (458)
Q Consensus 2 kl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (458)
++++|--|+ |.|.+++.++..+|+|+|-..+. + ....+.+ .|+.
T Consensus 502 ~v~~lDVGq----G~a~li~~~~~~lLiDtG~~~~~---~--------------------------~~~~~~i---~P~L 545 (755)
T PRK11539 502 RVDMLDVGH----GLAVVIERNGKAILYDTGNAWPT---G--------------------------DSAQQVI---IPWL 545 (755)
T ss_pred EEEEEEccC----ceEEEEEECCEEEEEeCCCCCCC---C--------------------------cchHHHH---HHHH
Confidence 566666653 77999999999999999965321 0 0001122 4554
Q ss_pred cccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEe
Q 012717 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYIT 125 (458)
Q Consensus 82 ~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T 125 (458)
+. ... +||.|+|||. ||+||++.+.+++. ..+||.+
T Consensus 546 ~~------~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~-~~~i~~~ 583 (755)
T PRK11539 546 RW------HGL-TPEGIILSHEHLDHRGGLASLLHAWP-MAWIRSP 583 (755)
T ss_pred HH------cCC-CcCEEEeCCCCcccCCCHHHHHHhCC-cceeecc
Confidence 32 234 5999999999 99999999987532 4567754
No 36
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.26 E-value=6.7e-06 Score=80.43 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=60.9
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (458)
.+|++||+||. ||+||++.|.+.++ ..+||+.... .. . +
T Consensus 45 ~~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~----------~~---~------~------------------- 85 (258)
T PLN02469 45 AKIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLD----------NV---K------G------------------- 85 (258)
T ss_pred CcccEEEecCCCCccccCHHHHHHHCC-CCEEEEechh----------cC---C------C-------------------
Confidence 37999999999 99999999987542 5789986421 00 0 0
Q ss_pred hhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe-cCCCCCCceEEEEEeC--CeeEEEecC
Q 012717 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIGACNWIISGA--KGNIAYISG 247 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~-~aGH~lGsa~~~I~~~--~~~i~ytgD 247 (458)
.-+.+.-++.+.+.++++++.. --||..|+..|.+... ..+++|+||
T Consensus 86 ------------------------------~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGD 135 (258)
T PLN02469 86 ------------------------------CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGD 135 (258)
T ss_pred ------------------------------CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecC
Confidence 0134556777787433443322 3599999999988643 357999999
Q ss_pred CCC
Q 012717 248 SNF 250 (458)
Q Consensus 248 ~~~ 250 (458)
+..
T Consensus 136 tLf 138 (258)
T PLN02469 136 TLF 138 (258)
T ss_pred ccc
Confidence 754
No 37
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.15 E-value=9.1e-06 Score=79.21 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=50.9
Q ss_pred CEEEEecCCCCcCCCceEEEEEC-CEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccC
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVS-GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~-~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 79 (458)
|+++.+.... .-.+|++..+ +..+|+|+|.... +. ..+..
T Consensus 1 ~~i~~~~~~~---dNy~~li~~~~~~~ilIDpg~~~~-vl--------------------------------~~l~~--- 41 (251)
T PRK10241 1 MNLNSIPAFD---DNYIWVLNDEAGRCLIVDPGEAEP-VL--------------------------------NAIAE--- 41 (251)
T ss_pred CeeEEeeeec---ceEEEEEEcCCCcEEEECCCChHH-HH--------------------------------HHHHH---
Confidence 6778887753 3556888654 5789999995421 00 11100
Q ss_pred cccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEeh
Q 012717 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITE 126 (458)
Q Consensus 80 ~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~ 126 (458)
. -.++++||+||. ||+||+..|.++++ ..+||+..
T Consensus 42 ----------~-g~~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~ 78 (251)
T PRK10241 42 ----------N-NWQPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQ 78 (251)
T ss_pred ----------c-CCccCEEEeCCCCchhhccHHHHHHHCC-CCEEEecc
Confidence 0 125789999999 99999999988643 57899864
No 38
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.12 E-value=1.5e-05 Score=75.81 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=35.2
Q ss_pred ceeeCCCCEEEeCC-cEEEEEecCCCCCCceEEEEEeCCeeEEEecCCCC
Q 012717 202 VQTLRFGEEACYNG-ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 250 (458)
Q Consensus 202 i~~v~y~e~v~i~g-~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~~ 250 (458)
...+.-++.+.+.+ .+++...+ ||..|+..|.++.++ ++|+||...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~tp-GHT~g~~~~~~~~~~--~l~~gD~~~ 170 (252)
T COG0491 124 LRALEDGDELDLGGLELEVLHTP-GHTPGHIVFLLEDGG--VLFTGDTLF 170 (252)
T ss_pred ceecCCCCEEEecCeEEEEEECC-CCCCCeEEEEECCcc--EEEecceec
Confidence 34445677777742 38888888 999999999998655 999999754
No 39
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.12 E-value=2.7e-05 Score=78.50 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=62.3
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (458)
.+|++||+||. ||+||+..|.+++ ..+||++....+. + .
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~--ga~V~g~~~~~~~--------i---~-------------------------- 160 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARY--GAKVIGSAVDKDR--------I---P-------------------------- 160 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhc--CCEEEEehHHhhh--------c---c--------------------------
Confidence 46999999999 9999999998764 5899998643210 0 0
Q ss_pred hhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe-cCCCCCCceEEEEEeCCeeEEEecCCC
Q 012717 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~-~aGH~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
+ .-+.+.-++.+.+ |+.+++.. --||..|...|.+. +.+++|+||+.
T Consensus 161 -----------~------------------~d~~v~dGd~i~l-gg~~l~vi~tPGHT~GhI~~~~~--~~~vLFtGDtL 208 (329)
T PLN02398 161 -----------G------------------IDIVLKDGDKWMF-AGHEVLVMETPGHTRGHISFYFP--GSGAIFTGDTL 208 (329)
T ss_pred -----------C------------------CcEEeCCCCEEEE-CCeEEEEEeCCCcCCCCEEEEEC--CCCEEEECCCc
Confidence 0 0134566777777 45565544 34999999998764 45799999986
Q ss_pred CC
Q 012717 250 FA 251 (458)
Q Consensus 250 ~~ 251 (458)
..
T Consensus 209 f~ 210 (329)
T PLN02398 209 FS 210 (329)
T ss_pred CC
Confidence 43
No 40
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.02 E-value=2.7e-06 Score=83.68 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=34.1
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHH
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQ 133 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~ 133 (458)
+..+|+||+||. ||+.|++.|.+ +|..++|++..|.....
T Consensus 60 ~~~idai~~TH~H~DHi~Gl~~l~~--~~~~~~~~~~~~~~~~~ 101 (269)
T COG1235 60 VSDLDAILLTHEHSDHIQGLDDLRR--AYTLPIYVNPGTLRAST 101 (269)
T ss_pred ccccCeEEEecccHHhhcChHHHHH--HhcCCcccccceecccc
Confidence 458999999999 99999999986 46788999988877544
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.92 E-value=0.00033 Score=68.34 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=43.2
Q ss_pred cceeeCCCCEEEeCCcEEEEEecC-----CCC--------CCceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCc
Q 012717 201 KVQTLRFGEEACYNGILIIKAFSS-----GLD--------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSD 267 (458)
Q Consensus 201 ~i~~v~y~e~v~i~g~l~i~~~~a-----GH~--------lGsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D 267 (458)
+++.+.+++.+++ +++++++..+ -|. -+.++|+|+.++.+|.+.||+... ..........+|
T Consensus 101 ~~~~~~~~~~~~~-~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~----~~~~~~~~~~~D 175 (258)
T COG2220 101 RVHELGWGDVIEL-GDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYL----FLIIEELDGPVD 175 (258)
T ss_pred eEEeecCCceEEe-cCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHH----HHhhhhhcCCcc
Confidence 5777888888888 4555543322 222 347789999999999999998741 011111122379
Q ss_pred EEEEc
Q 012717 268 LILYS 272 (458)
Q Consensus 268 ~Li~e 272 (458)
++++.
T Consensus 176 vallP 180 (258)
T COG2220 176 VALLP 180 (258)
T ss_pred EEEec
Confidence 98886
No 42
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.89 E-value=0.00043 Score=65.99 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=31.7
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCcc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSA 37 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~ 37 (458)
||+.+++.-+=.|-.-|.++|+++.+||+|.|+....
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaP 37 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAP 37 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCc
Confidence 8999999865346677999999999999999998763
No 43
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.88 E-value=0.00014 Score=72.10 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=44.8
Q ss_pred CceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCCc
Q 012717 15 PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSF 94 (458)
Q Consensus 15 ~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~~ 94 (458)
+...+++.++.++|.|-|...+. ..+ .|+.++ ..+.+
T Consensus 54 g~a~li~~~~~~~l~dtg~~~~~----------------------------------~~i---ip~Lk~------~GV~~ 90 (293)
T COG2333 54 GLATLIRSEGKTILYDTGNSMGQ----------------------------------DVI---IPYLKS------LGVRK 90 (293)
T ss_pred CeEEEEeeCCceEEeecCcccCc----------------------------------eee---hhhHhH------cCCcc
Confidence 55777888888888888875221 122 566543 57889
Q ss_pred ccEEEecCC--CCcchhhhhhcccC
Q 012717 95 IDVVLISSP--MGMLGLPFLTRMEG 117 (458)
Q Consensus 95 IDaVlISHa--DH~g~LP~L~~~~g 117 (458)
||.+++||+ ||+|+++-+.+.+.
T Consensus 91 iD~lIlTH~d~DHiGg~~~vl~~~~ 115 (293)
T COG2333 91 LDQLILTHPDADHIGGLDEVLKTIK 115 (293)
T ss_pred ccEEEeccCCccccCCHHHHHhhCC
Confidence 999999999 99999999998543
No 44
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.84 E-value=0.00028 Score=73.56 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=82.0
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+.-+=++||+ ||-.||---.. ++|+||+.-|+.+...-+. +
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~----~p~lYCS~ita~Lv~~~~~----v----------------------------- 154 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS----HPPLYCSPITARLVPLKVS----V----------------------------- 154 (481)
T ss_pred ccceeeeeccccccccccccccc----CCcccccccchhhhhhhcc----c-----------------------------
Confidence 4567799999 99777632221 4679999999886432111 0
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCC-eeEEEecCCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAK-GNIAYISGSNF 250 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~-~~i~ytgD~~~ 250 (458)
-++.++.++-+|++.+. +++++.++|-|+.|+++|..+... .+++++||+..
T Consensus 155 --------------------------~~~~i~~l~l~~~~~i~-~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~ 207 (481)
T KOG1361|consen 155 --------------------------TKQSIQALDLNQPLEIP-GIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRA 207 (481)
T ss_pred --------------------------ChhhceeecCCCceeec-ceEEEEeccccCCCceEEEeecCCCceEEecCCccc
Confidence 01357888999999996 499999999999999999999764 69999999865
Q ss_pred CCCCCCcCCCCCC-CCCcEEEEcCCCCCC
Q 012717 251 ASGHAMDFDYRAI-QGSDLILYSDLSSLD 278 (458)
Q Consensus 251 ~~~~~~~~d~~~l-~~~D~Li~e~~~st~ 278 (458)
........ .... ...|.+.++ .||
T Consensus 208 s~~m~~~p-~~~~~~~i~~lyLD---tTy 232 (481)
T KOG1361|consen 208 SADMSKEP-ALTLEQTIDILYLD---TTY 232 (481)
T ss_pred ChhhhhCh-HHhcCCccceEEEe---ecc
Confidence 32111110 0112 357888887 565
No 45
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.73 E-value=0.00022 Score=69.41 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=25.5
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEe
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYIT 125 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T 125 (458)
+|.+||+||. ||+|+++.|.++++ ..+||+.
T Consensus 61 ~i~~Il~TH~H~DHigg~~~l~~~~~-~a~v~~~ 93 (251)
T PLN02962 61 KLIYAMNTHVHADHVTGTGLLKTKLP-GVKSIIS 93 (251)
T ss_pred eeEEEEcCCCCchhHHHHHHHHHHCC-CCeEEec
Confidence 5889999999 99999999976531 4788874
No 46
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.71 E-value=7.1e-06 Score=88.01 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=41.3
Q ss_pred CcEEEEEecCCCCCCceEEEEEeCC-eeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcC
Q 012717 215 GILIIKAFSSGLDIGACNWIISGAK-GNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (458)
Q Consensus 215 g~l~i~~~~aGH~lGsa~~~I~~~~-~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~ 273 (458)
+...|.-.++=|+.-|++..|+... .||+|+||+-. .+.-...-.++|+||-|+
T Consensus 594 ~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP-----~~~~v~~g~datlLIHEA 648 (746)
T KOG2121|consen 594 GLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRP-----CEDLVKAGKDATLLIHEA 648 (746)
T ss_pred CceeEEecCcEecChhhceeEecccceEEEEcCCCCC-----chhHhhhccCCceEEeeh
Confidence 5577888899999999999999764 89999999852 111122346899999993
No 47
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.20 E-value=0.0038 Score=63.08 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=29.5
Q ss_pred cEEEEEecCCCCCC------ceEEEEEeCC--eeEEEecCCCCC
Q 012717 216 ILIIKAFSSGLDIG------ACNWIISGAK--GNIAYISGSNFA 251 (458)
Q Consensus 216 ~l~i~~~~aGH~lG------sa~~~I~~~~--~~i~ytgD~~~~ 251 (458)
.+.+++++..|.-+ |++|.|+.+. +.|+|.||+...
T Consensus 176 ~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~D 219 (335)
T PF02112_consen 176 SSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPD 219 (335)
T ss_pred cccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCC
Confidence 36677799889855 7999999875 899999999754
No 48
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=96.44 E-value=0.011 Score=57.56 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=37.6
Q ss_pred eeCCCCEEEeCCcEEEEEe-cCCCCCCceEEEEE-eCCeeEEEecCCCC
Q 012717 204 TLRFGEEACYNGILIIKAF-SSGLDIGACNWIIS-GAKGNIAYISGSNF 250 (458)
Q Consensus 204 ~v~y~e~v~i~g~l~i~~~-~aGH~lGsa~~~I~-~~~~~i~ytgD~~~ 250 (458)
.+..++.+.+ ++++|+.. .=||.-|...+.+. ..+++.+|+||+..
T Consensus 95 ~~~~~e~~~~-~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf 142 (265)
T KOG0813|consen 95 GLKDGETVTV-GGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLF 142 (265)
T ss_pred cCCCCcEEEE-CCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCcee
Confidence 3788899999 47888765 45999999999998 56789999999753
No 49
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=94.58 E-value=0.028 Score=51.47 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=68.3
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
.+-+||++..++.+||+|-----.. +...| ...
T Consensus 21 ~dfng~~~~~p~GnilIDP~~ls~~--------------------------------~~~~l---------------~a~ 53 (199)
T PF14597_consen 21 LDFNGHAWRRPEGNILIDPPPLSAH--------------------------------DWKHL---------------DAL 53 (199)
T ss_dssp EEEEEEEE--TT--EEES-----HH--------------------------------HHHHH---------------HHT
T ss_pred cCceeEEEEcCCCCEEecCccccHH--------------------------------HHHHH---------------Hhc
Confidence 4577999999999999996532110 11111 245
Q ss_pred CcccEEEecCCCCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhh
Q 012717 93 SFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172 (458)
Q Consensus 93 ~~IDaVlISHaDH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (458)
..++.|+|||.||+.+---+.++ |.++||...+-++. +
T Consensus 54 ggv~~IvLTn~dHvR~A~~ya~~--~~a~i~~p~~d~~~-------------------------------------~--- 91 (199)
T PF14597_consen 54 GGVAWIVLTNRDHVRAAEDYAEQ--TGAKIYGPAADAAQ-------------------------------------F--- 91 (199)
T ss_dssp T--SEEE-SSGGG-TTHHHHHHH--S--EEEEEGGGCCC-----------------------------------------
T ss_pred CCceEEEEeCChhHhHHHHHHHH--hCCeeeccHHHHhh-------------------------------------C---
Confidence 78999999999999998777764 56899988644210 0
Q ss_pred hhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCC
Q 012717 173 LRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGS 248 (458)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~ 248 (458)
|+. -=+.+.-++ ++-+++++...+-.|..|.....++. +++++||.
T Consensus 92 -----------------p~~--------~D~~l~dge--~i~~g~~vi~l~G~ktpGE~ALlled---~vLi~GDl 137 (199)
T PF14597_consen 92 -----------------PLA--------CDRWLADGE--EIVPGLWVIHLPGSKTPGELALLLED---RVLITGDL 137 (199)
T ss_dssp -----------------SS----------SEEE-TT---BSSTTEEEEEE-SSSSTTEEEEEETT---TEEEESSS
T ss_pred -----------------CCC--------CccccccCC--CccCceEEEEcCCCCCCceeEEEecc---ceEEecce
Confidence 100 013444454 44578999988877999999999984 69999995
No 50
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=92.88 E-value=0.16 Score=38.49 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred CCceEEEEECCEEEEE-cCCCCCc
Q 012717 14 FPPCHILNVSGFHVLF-DCPLDLS 36 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILl-DCG~~~~ 36 (458)
.++|.+|.+++.+.|+ +||-..+
T Consensus 11 ~~p~l~l~~d~~rYlFGn~gEGtQ 34 (63)
T PF13691_consen 11 SGPSLLLFFDSRRYLFGNCGEGTQ 34 (63)
T ss_pred CCCEEEEEeCCceEEeccCCcHHH
Confidence 3499999999999999 9998754
No 51
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=92.33 E-value=0.37 Score=51.06 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=64.6
Q ss_pred CEEEEecCCCCcCCCce-EEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccc-c
Q 012717 1 MKFTCLCQGGGFNFPPC-HILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFA-E 78 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc-~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 78 (458)
.||+|+++ |+|.|.| +++|+.|.+| |+.|-... +.| +.|..+ .
T Consensus 151 Ikf~p~~a--GhVlgacMf~veiagv~l-LyTGd~sr-------------------------------eeD-rhl~aae~ 195 (668)
T KOG1137|consen 151 IKFWPYHA--GHVLGACMFMVEIAGVRL-LYTGDYSR-------------------------------EED-RHLIAAEM 195 (668)
T ss_pred eEEEeecc--chhhhheeeeeeeceEEE-Eeccccch-------------------------------hhc-ccccchhC
Confidence 47899995 4799999 8899999776 56675421 011 111111 2
Q ss_pred CcccccccccccCCCcccEEEecCC--CCcchhhhhhccc---CCc--ceEEEehHHHHHHHHHHHHH
Q 012717 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---GFS--AKIYITEAAARIGQLMMEEL 139 (458)
Q Consensus 79 p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~---gf~--g~Iy~T~pT~~l~~~~L~d~ 139 (458)
|-.. | ...-...+-++.++|. +|.|+||.+.-.. |-+ .||||...+.+|..++.+.+
T Consensus 196 P~~~-~---dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw 259 (668)
T KOG1137|consen 196 PPTG-P---DVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYW 259 (668)
T ss_pred CCCC-c---cEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHh
Confidence 2211 1 1122356777888887 9999999988643 323 59999999999887666544
No 52
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=90.82 E-value=0.16 Score=55.11 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=43.8
Q ss_pred EEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccc
Q 012717 4 TCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKT 83 (458)
Q Consensus 4 ~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 83 (458)
+.++||. |-.-|.-++|++||+|-|.... .+||.-
T Consensus 41 YIfpGg~----gdaALFavnGf~iLv~GgserK-----------------------------------------S~fwkl 75 (934)
T KOG3592|consen 41 YIFPGGR----GDAALFAVNGFNILVNGGSERK-----------------------------------------SCFWKL 75 (934)
T ss_pred EECCCCC----CcceeEeecceEEeecCCcccc-----------------------------------------cchHHH
Confidence 4566653 4567888999999999887742 122210
Q ss_pred cccccccCCCcccEEEecCC--CCcchhhhhhc
Q 012717 84 VNNLHLWNVSFIDVVLISSP--MGMLGLPFLTR 114 (458)
Q Consensus 84 ~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~ 114 (458)
+--..+||+|||||. |.++|+.-|++
T Consensus 76 -----VrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 76 -----VRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred -----HHHHhhhhhhhhcccccCccccchHHHH
Confidence 112468999999999 99999988875
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=62.84 E-value=17 Score=35.79 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=65.6
Q ss_pred CcccEEEecCC--CCcchhh----hhhcccCCcceEEEehHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCccchhhhH
Q 012717 93 SFIDVVLISSP--MGMLGLP----FLTRMEGFSAKIYITEAAARIGQL-MMEELICMNMEYRQFYGAEESSGPQWMKWEE 165 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP----~L~~~~gf~g~Iy~T~pT~~l~~~-~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (458)
..|.--+|||+ ||+.||- -..++ -+-.||...-|.+..+- ...++ -|-+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvFN~l-------------------vWP~--- 166 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVFNWL-------------------VWPN--- 166 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhhccc-------------------ccCC---
Confidence 57899999999 9999973 22221 13469999999885432 11111 1211
Q ss_pred hhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCC-cEEEEEecCCCCC--C----ceEEEEEeC
Q 012717 166 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG-ILIIKAFSSGLDI--G----ACNWIISGA 238 (458)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g-~l~i~~~~aGH~l--G----sa~~~I~~~ 238 (458)
+. .++. -+-+++.++..|...+.- .+++.+++.-|.. | |+++.++.+
T Consensus 167 lt------------~~gs--------------~~~~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~n 220 (356)
T COG5212 167 LT------------DSGS--------------GTYRMQVVRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSN 220 (356)
T ss_pred cc------------cccC--------------ceEEEEEeChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecC
Confidence 00 0010 012566677666554421 2677888888875 3 468888876
Q ss_pred --CeeEEEecCCCC
Q 012717 239 --KGNIAYISGSNF 250 (458)
Q Consensus 239 --~~~i~ytgD~~~ 250 (458)
++-++|.||...
T Consensus 221 kS~~~f~~fGDvep 234 (356)
T COG5212 221 KSNEFFAYFGDVEP 234 (356)
T ss_pred CCcceEEEecCCCc
Confidence 577889999863
No 54
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=62.43 E-value=58 Score=31.82 Aligned_cols=35 Identities=9% Similarity=0.235 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCCc----------eEEEEEeCCeeEEEecCCCCC
Q 012717 217 LIIKAFSSGLDIGA----------CNWIISGAKGNIAYISGSNFA 251 (458)
Q Consensus 217 l~i~~~~aGH~lGs----------a~~~I~~~~~~i~ytgD~~~~ 251 (458)
++|.+.+|-|--|- |.|.+...+.+++|.||++..
T Consensus 198 ~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc 242 (343)
T KOG3798|consen 198 YTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGDTGYC 242 (343)
T ss_pred EEEEEcchhhhcccccccCCcceeeeeEEecCCceEEecCCCCcc
Confidence 67778888776442 478888888899999999753
No 55
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=49.51 E-value=17 Score=34.13 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhC
Q 012717 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS 356 (458)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~ 356 (458)
..+++.+.+.|+.||.++|=++..++.+|++..+...+.+.
T Consensus 145 ~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v 185 (209)
T PRK11188 145 ELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKV 185 (209)
T ss_pred HHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEE
Confidence 34678888999999999999999999999999888777664
No 56
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=42.21 E-value=61 Score=30.58 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhC
Q 012717 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS 356 (458)
Q Consensus 318 l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~ 356 (458)
..+...+.|+.||+.++++|-.+-..+++..+.+++..-
T Consensus 141 a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v 179 (205)
T COG0293 141 ALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKV 179 (205)
T ss_pred HHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhcee
Confidence 345566688999999999999999999999999887764
No 57
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=38.24 E-value=1.9e+02 Score=25.04 Aligned_cols=67 Identities=19% Similarity=0.480 Sum_probs=44.1
Q ss_pred HHHHcC--CeEEEe-cCchhh-HHHHHHHHHHHHHhCCCcccEEEEch------hHHHHHHHHHhhHHhhhHHHHHhhh
Q 012717 324 DSVKAG--GSVLIP-INRVGV-FLQLLEQIAIFMECSSLKIPIYIISS------VAEELLAYTNTIPEWLCKQRQEKLF 392 (458)
Q Consensus 324 ~tl~~g--G~VLIP-v~a~Gr-~qELl~~L~~~~~~~~l~~pIy~~s~------~a~~~~~~~~~~~ewl~~~~~~~~~ 392 (458)
+.+++| ..|++- .+-+|| ..|++.++..+.+..+ +.|+++.. -...++.+...+.||.++.+.+++.
T Consensus 62 ~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~g--v~l~~~~~~~d~~~~~~~~~~~~~~~ae~~~~~~~~~v~ 138 (140)
T cd03770 62 EDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKG--VRFIAINDGVDSADGDDDFIPFKNILNEWYAKDISRKIK 138 (140)
T ss_pred HHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcC--cEEEEecCCcCCCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 345667 666666 556888 5888888887776633 33333221 1235678888999999988887764
No 58
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.07 E-value=77 Score=31.52 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=19.3
Q ss_pred cCCCcccEEEecCC--CCcchhhhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFL 112 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L 112 (458)
+-..+||.|.+||. +|+|.+-++
T Consensus 121 vt~d~i~~vv~t~~~~~hlgn~~~f 145 (302)
T KOG4736|consen 121 VTLDQIDSVVITHKSPGHLGNNNLF 145 (302)
T ss_pred cChhhcceeEEeccCcccccccccc
Confidence 34678999999999 999998654
No 59
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=32.06 E-value=90 Score=28.42 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHH
Q 012717 315 LAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFME 354 (458)
Q Consensus 315 l~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~ 354 (458)
.+.+++.+.+.|++||.+++=++...+.-+++..+...+.
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFE 164 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhc
Confidence 4457788899999999999977776777788877766553
No 60
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=30.61 E-value=24 Score=38.10 Aligned_cols=65 Identities=26% Similarity=0.474 Sum_probs=38.5
Q ss_pred ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhcCCCCCCceeeeeccc-------cccCCCCCCCcEEEecCCCCCCCC
Q 012717 360 IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKK-------IHVFPAVHSPKLLNLASCFLPTGV 432 (458)
Q Consensus 360 ~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~pF~~~~~~~~~~-------l~~~~~~~~p~vi~a~~~~l~~G~ 432 (458)
+.||=+| ..+..++||++.++.++.....-+.-+++++.-+ +++- .+.+-++|+
T Consensus 9 VkiYnvS--------~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s---~DGqY~lAt-------- 69 (703)
T KOG2321|consen 9 VKIYNVS--------AGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVS---PDGQYLLAT-------- 69 (703)
T ss_pred eEEEEee--------cCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEec---CCCcEEEEe--------
Confidence 8999888 4567899999888775543322233333443321 2221 245666665
Q ss_pred CCCCCCee-eecC
Q 012717 433 CGLVPPFI-CFDA 444 (458)
Q Consensus 433 s~~~~~~~-~~~~ 444 (458)
+.+.|.| |+|-
T Consensus 70 -G~YKP~ikvydl 81 (703)
T KOG2321|consen 70 -GTYKPQIKVYDL 81 (703)
T ss_pred -cccCCceEEEEc
Confidence 5678877 5553
No 61
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=26.87 E-value=1.1e+02 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEecCc
Q 012717 312 MEKLAFICSCAIDSVKAGGSVLIPINR 338 (458)
Q Consensus 312 ~erl~~l~~~I~~tl~~gG~VLIPv~a 338 (458)
.+-++.|++.|.++|.+||.|-||-|-
T Consensus 22 ~~~v~~~~~~i~~~L~~~~~v~l~gfG 48 (90)
T PRK10664 22 GRALDAIIASVTESLKEGDDVALVGFG 48 (90)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCcE
Confidence 345678999999999999999999774
No 62
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=26.28 E-value=1.5e+02 Score=27.46 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=30.8
Q ss_pred eCCCCEEEeCCcEEEEEe-cCCCCCCceEEEEEeCCeeEEEecCCC
Q 012717 205 LRFGEEACYNGILIIKAF-SSGLDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 205 v~y~e~v~i~g~l~i~~~-~aGH~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
++-++.+++ |++.+... .-||..|..-|++. ..+.+||||..
T Consensus 100 l~~Gd~i~~-G~~~le~ratPGHT~GC~TyV~~--d~~~aFTGDal 142 (237)
T KOG0814|consen 100 LEDGDIIEI-GGLKLEVRATPGHTNGCVTYVEH--DLRMAFTGDAL 142 (237)
T ss_pred cCCCCEEEE-ccEEEEEecCCCCCCceEEEEec--Ccceeeeccee
Confidence 456778888 56666554 45999999888775 45688988864
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=23.61 E-value=1.2e+02 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHH
Q 012717 315 LAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351 (458)
Q Consensus 315 l~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~ 351 (458)
...+++.+.+.|+.||.+++-........+++..|.+
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 4568888999999999998876655447777766644
No 64
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=23.51 E-value=1.2e+02 Score=27.81 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHH
Q 012717 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351 (458)
Q Consensus 318 l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~ 351 (458)
+++.+.+.|+.||.+++-+...+...+++..|.+
T Consensus 127 ~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 127 IISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred HHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 5667778899999999877777777777777644
No 65
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=22.20 E-value=1.2e+02 Score=24.29 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecCc
Q 012717 313 EKLAFICSCAIDSVKAGGSVLIPINR 338 (458)
Q Consensus 313 erl~~l~~~I~~tl~~gG~VLIPv~a 338 (458)
+-+++|.+.|.+.|.+|++|-||=|-
T Consensus 24 ~vv~~~~~~i~~~L~~g~~V~l~gfG 49 (94)
T TIGR00988 24 DAVKTMLEHMASALAQGDRIEIRGFG 49 (94)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCcE
Confidence 45678999999999999999998764
No 66
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=21.73 E-value=4.2e+02 Score=26.52 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCeEEEecCchhh-HHHHHHHHHHHHHhCCCcccEEEEc-hh-HHHHHHHHHhhHH
Q 012717 316 AFICSCAIDSVKAGGSVLIPINRVGV-FLQLLEQIAIFMECSSLKIPIYIIS-SV-AEELLAYTNTIPE 381 (458)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIPv~a~Gr-~qELl~~L~~~~~~~~l~~pIy~~s-~~-a~~~~~~~~~~~e 381 (458)
++.++.|.++++..+++++ +|+.|. ..=||.++.+.+...+.++|+++++ +. ..++.++.+.+.+
T Consensus 14 ~esi~iLrea~~~f~~~vv-~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~ 81 (301)
T PRK05253 14 AESIHILREVAAEFENPVM-LYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAK 81 (301)
T ss_pred HHHHHHHHHHHHhCCCEEE-EecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4466778888888888877 788787 5666666666665555667766555 32 2455555555444
No 67
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=21.05 E-value=1.8e+02 Score=25.83 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHH
Q 012717 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353 (458)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~ 353 (458)
.+|..+.++..+|.+|+|=+-.-++.++|=..|..+-
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~ 53 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFS 53 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccc
Confidence 5889999999999999999999899998888876543
No 68
>PHA02770 hypothetical protein; Provisional
Probab=20.88 E-value=63 Score=24.42 Aligned_cols=24 Identities=42% Similarity=0.343 Sum_probs=19.0
Q ss_pred CCCCCCCeeeecCCCe-EEEEEEee
Q 012717 432 VCGLVPPFICFDAGVG-IITLYLFL 455 (458)
Q Consensus 432 ~s~~~~~~~~~~~~~~-~~~~~~~~ 455 (458)
.+-+.+|-|.|+|+-+ =||||+=.
T Consensus 24 i~flvepqilfyakkrnri~gylei 48 (81)
T PHA02770 24 ISFLVEPQILFYAKKRNRITGYLEV 48 (81)
T ss_pred eEEEecceeeEeeeccCeEEEEEEE
Confidence 3456789999999887 89999854
No 69
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=20.78 E-value=3.8e+02 Score=26.72 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEecCchh---h----HHHHHHHHHHHHHhCCC--cccEEEEchhHHHHHHHHHhh
Q 012717 312 MEKLAFICSCAIDSVKAGGSVLIPINRVG---V----FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTI 379 (458)
Q Consensus 312 ~erl~~l~~~I~~tl~~gG~VLIPv~a~G---r----~qELl~~L~~~~~~~~l--~~pIy~~s~~a~~~~~~~~~~ 379 (458)
++.+++||+.+.++++.|-++||=.+... | .+=..-.+++++.+.++ ++-|++.|+-+.++-+++-..
T Consensus 138 ~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~Ll 214 (287)
T PF04898_consen 138 EEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLL 214 (287)
T ss_dssp HHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHH
Confidence 34688899999999999999999888632 2 13344467888888877 399999999999988877654
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=20.30 E-value=1.6e+02 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHH
Q 012717 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 352 (458)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~ 352 (458)
++++.+.+.|+.||.+.+=++......+++..+.+.
T Consensus 113 ~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 113 HFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 477889999999999999999888888888777654
Done!