Query 012717
Match_columns 458
No_of_seqs 200 out of 1496
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iek_A Ribonuclease TTHA0252; 100.0 1.3E-56 4.3E-61 466.9 29.9 334 1-453 1-342 (431)
2 2i7t_A Cleavage and polyadenyl 100.0 2E-50 6.9E-55 423.5 26.7 338 1-454 12-359 (459)
3 2i7x_A Protein CFT2; polyadeny 100.0 2.7E-45 9.2E-50 401.8 26.6 339 1-454 1-371 (717)
4 3af5_A Putative uncharacterize 100.0 1.7E-44 5.9E-49 393.1 28.3 348 1-454 189-552 (651)
5 2xr1_A Cleavage and polyadenyl 100.0 1.4E-43 4.7E-48 385.2 29.5 344 1-453 184-540 (640)
6 2ycb_A Beta-CAsp RNAse, cleava 100.0 1.8E-43 6.1E-48 384.4 28.0 347 1-454 180-537 (636)
7 3zq4_A Ribonuclease J 1, RNAse 100.0 1.1E-29 3.6E-34 271.6 24.9 249 1-379 9-269 (555)
8 3bk2_A RNAse J, metal dependen 100.0 1E-27 3.5E-32 257.0 25.0 256 1-384 17-289 (562)
9 2az4_A Hypothetical protein EF 99.9 1.4E-24 4.7E-29 225.2 16.7 278 1-376 7-293 (429)
10 4b87_A DNA cross-LINK repair 1 99.9 9.5E-22 3.3E-26 199.9 14.2 173 92-365 49-228 (367)
11 3zdk_A 5' exonuclease apollo; 99.8 1E-20 3.5E-25 190.0 15.7 176 93-366 23-206 (336)
12 1y44_A Ribonuclease Z; zinc-de 99.7 2.7E-17 9.4E-22 163.3 11.9 167 1-272 1-231 (320)
13 2cbn_A Ribonuclease Z; phospho 99.7 4.1E-17 1.4E-21 160.8 10.6 170 1-278 2-236 (306)
14 3g1p_A Protein PHNP; C-P lyase 99.7 2.3E-17 8E-22 159.2 6.3 160 1-273 3-188 (258)
15 1zkp_A Hypothetical protein BA 99.7 5.9E-17 2E-21 156.8 7.8 160 1-272 25-199 (268)
16 3zwf_A Zinc phosphodiesterase 99.6 1.2E-15 4E-20 155.2 12.2 90 1-136 1-105 (368)
17 3md7_A Beta-lactamase-like; ss 99.6 3.8E-15 1.3E-19 146.5 9.1 126 91-273 96-231 (293)
18 2e7y_A TRNAse Z; tRNA maturati 99.5 5.8E-15 2E-19 143.1 7.4 161 1-273 1-209 (280)
19 3jxp_A Coenzyme PQQ synthesis 99.5 8.8E-15 3E-19 146.0 7.1 177 1-273 3-223 (321)
20 3kl7_A Putative metal-dependen 99.5 6.2E-13 2.1E-17 126.7 16.9 139 1-272 30-181 (235)
21 2r2d_A AGR_PTI_140P, Zn-depend 99.4 5E-12 1.7E-16 122.3 15.5 110 90-250 99-216 (276)
22 3m8t_A 'BLR6230 protein; subcl 99.3 9E-12 3.1E-16 121.5 11.0 144 14-249 54-204 (294)
23 3esh_A Protein similar to meta 99.3 5.9E-12 2E-16 122.5 8.5 160 13-250 46-209 (280)
24 1ztc_A Hypothetical protein TM 99.3 4.8E-12 1.6E-16 119.0 6.8 153 1-249 13-176 (221)
25 3rpc_A Possible metal-dependen 99.2 1E-10 3.6E-15 112.9 15.5 166 1-272 5-190 (264)
26 2wyl_A L-ascorbate-6-phosphate 99.2 8.8E-11 3E-15 118.7 15.5 118 91-272 106-248 (360)
27 3dha_A N-acyl homoserine lacto 99.2 7.8E-12 2.7E-16 119.5 6.8 100 90-250 96-198 (254)
28 1k07_A FEZ-1 beta-lactamase; m 99.2 2.2E-11 7.4E-16 117.2 9.4 146 14-249 24-176 (263)
29 3l6n_A Metallo-beta-lactamase; 99.2 2.3E-11 7.8E-16 113.5 8.8 128 13-249 29-160 (219)
30 2xf4_A Hydroxyacylglutathione 99.2 2.7E-11 9.1E-16 112.4 7.8 148 1-249 1-153 (210)
31 2zwr_A Metallo-beta-lactamase 99.2 6.7E-11 2.3E-15 109.7 10.0 144 1-249 1-146 (207)
32 3bv6_A Metal-dependent hydrola 99.2 3.7E-10 1.3E-14 115.0 15.6 118 91-272 130-273 (379)
33 3adr_A Putative uncharacterize 99.2 5.5E-10 1.9E-14 106.8 15.4 159 2-250 5-168 (261)
34 1p9e_A Methyl parathion hydrol 99.1 1.1E-10 3.7E-15 116.7 7.9 157 15-250 97-258 (331)
35 3aj3_A MLR6805 protein, 4-pyri 99.1 1.4E-10 4.8E-15 112.0 8.5 123 90-250 84-210 (274)
36 2vw8_A PA1000, PQSE; quinolone 99.1 1E-09 3.4E-14 107.8 13.7 153 14-249 23-182 (303)
37 1e5d_A Rubredoxin\:oxygen oxid 99.1 1.1E-10 3.7E-15 119.1 6.9 96 91-249 68-167 (402)
38 1m2x_A Class B carbapenemase B 99.0 4.9E-10 1.7E-14 105.0 9.9 128 13-249 25-156 (223)
39 3iog_A Beta-lactamase; hydrola 99.0 5.1E-10 1.8E-14 104.6 9.7 80 12-136 20-101 (227)
40 4ax1_B Metallo-beta-lactamase 99.0 8.4E-10 2.9E-14 107.7 10.2 145 14-249 57-208 (303)
41 1sml_A Protein (penicillinase) 99.0 1.3E-09 4.6E-14 104.9 11.2 143 14-249 37-186 (269)
42 2ohh_A Type A flavoprotein FPR 99.0 7.1E-10 2.4E-14 113.0 8.9 132 14-249 34-172 (404)
43 4efz_A Metallo-beta-lactamase 99.0 3.1E-09 1.1E-13 104.4 13.1 162 1-250 5-177 (298)
44 3q6v_A Beta-lactamase; metallo 99.0 1.7E-09 5.7E-14 101.5 10.7 154 4-250 16-171 (233)
45 2zo4_A Metallo-beta-lactamase 99.0 1.5E-09 5.2E-14 106.9 10.7 164 14-250 21-193 (317)
46 4hl2_A Beta-lactamase NDM-1; s 99.0 3.9E-11 1.3E-15 114.0 -0.9 138 12-250 45-184 (243)
47 2fhx_A SPM-1; metallo-beta-lac 99.0 2.2E-09 7.5E-14 101.8 11.0 118 91-250 66-187 (246)
48 1vjn_A Zn-dependent hydrolase 99.0 2E-09 6.9E-14 101.3 10.3 58 211-272 81-145 (220)
49 1ycg_A Nitric oxide reductase; 99.0 5.3E-10 1.8E-14 113.8 6.8 97 90-249 68-168 (398)
50 1a7t_A Metallo-beta-lactamase; 98.9 9.9E-10 3.4E-14 103.6 7.6 128 14-250 36-167 (232)
51 2bib_A CBPE, teichoic acid pho 98.9 2E-09 7E-14 114.5 10.9 200 1-272 6-227 (547)
52 1mqo_A Beta-lactamase II; alph 98.9 4.3E-10 1.5E-14 105.6 5.0 127 14-249 40-170 (227)
53 2p18_A Glyoxalase II; metallop 98.9 1.8E-09 6.2E-14 107.0 9.4 90 92-250 82-183 (311)
54 2qed_A Hydroxyacylglutathione 98.9 1.4E-09 4.8E-14 104.9 8.2 126 1-250 8-137 (258)
55 3hnn_A Putative diflavin flavo 98.9 5.1E-10 1.7E-14 107.9 4.9 97 91-249 76-176 (262)
56 4dik_A Flavoprotein; TM0755, e 98.9 2.4E-09 8.3E-14 110.0 9.4 129 14-250 51-183 (410)
57 2gcu_A Putative hydroxyacylglu 98.9 3.4E-09 1.2E-13 101.3 9.3 132 1-250 3-145 (245)
58 1qh5_A Glyoxalase II, protein 98.9 3.6E-09 1.2E-13 102.1 8.1 129 1-250 1-137 (260)
59 3tp9_A Beta-lactamase and rhod 98.9 1.3E-09 4.4E-14 114.1 5.1 139 1-250 4-152 (474)
60 2p97_A Hypothetical protein; p 98.8 8.4E-10 2.9E-14 102.0 2.8 119 13-250 22-140 (201)
61 2q9u_A A-type flavoprotein; fl 98.8 6.1E-09 2.1E-13 106.7 7.7 96 91-249 74-173 (414)
62 1xm8_A Glyoxalase II; structur 98.8 5.4E-09 1.8E-13 100.5 6.4 86 94-250 46-134 (254)
63 4ad9_A Lactb2, beta-lactamase- 98.8 8E-10 2.7E-14 107.8 -0.1 133 14-250 31-168 (289)
64 2y8b_A Metallo-B-lactamase; hy 98.7 1.3E-08 4.5E-13 98.1 7.1 133 13-250 66-200 (265)
65 1jjt_A IMP-1 metallo beta-lact 98.7 5.9E-09 2E-13 98.0 3.6 73 13-131 31-105 (228)
66 3r2u_A Metallo-beta-lactamase 98.7 2.5E-08 8.7E-13 104.1 8.5 138 1-250 25-172 (466)
67 2p4z_A Metal-dependent hydrola 98.4 3.1E-07 1.1E-11 89.5 6.0 71 14-129 32-104 (284)
68 4eyb_A Beta-lactamase NDM-1; m 98.3 4.3E-07 1.5E-11 87.7 4.0 75 12-131 72-148 (270)
69 2cfu_A SDSA1; SDS-hydrolase, l 98.0 1.7E-05 5.8E-10 86.1 11.1 78 14-132 122-204 (658)
70 2yhe_A SEC-alkyl sulfatase; hy 96.9 4.4E-06 1.5E-10 90.7 0.0 75 15-130 133-212 (668)
71 3h3e_A Uncharacterized protein 97.4 5.2E-05 1.8E-09 73.2 3.0 29 96-129 63-93 (267)
72 3dou_A Ribosomal RNA large sub 29.5 17 0.00057 32.1 1.1 39 315-353 118-156 (191)
73 2nyu_A Putative ribosomal RNA 26.5 36 0.0012 29.2 2.8 38 316-353 125-162 (196)
74 1ej0_A FTSJ; methyltransferase 25.6 36 0.0012 28.1 2.6 40 316-355 116-155 (180)
75 2plw_A Ribosomal RNA methyltra 23.6 29 0.001 30.0 1.6 37 316-352 134-170 (201)
76 3rhi_A DNA-binding protein HU; 21.1 1E+02 0.0036 23.6 4.3 27 312-338 25-51 (93)
77 2fca_A TRNA (guanine-N(7)-)-me 20.8 1.3E+02 0.0046 26.3 5.5 35 317-351 134-168 (213)
No 1
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=1.3e-56 Score=466.91 Aligned_cols=334 Identities=19% Similarity=0.226 Sum_probs=278.6
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
||+++||+++ ++++|||||+.++.+||+|||++++.. ....+ .++
T Consensus 1 M~i~~LG~~~-~vg~s~~li~~~~~~iLID~G~~~~~~-------------------------------~~~~~---~~~ 45 (431)
T 3iek_A 1 MRIVPFGAAR-EVTGSAHLLLAGGRRVLLDCGMFQGKE-------------------------------EARNH---APF 45 (431)
T ss_dssp CEEEECSCSS-SSSCCCEEEEETTEEEEECCCCCCGGG-------------------------------GGGGG---SCC
T ss_pred CEEEEeCCCC-CCCCcEEEEEECCeEEEEeCCCCcchh-------------------------------hccch---hhc
Confidence 9999999984 899999999999999999999965420 00111 111
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
.+++.+||+|||||+ ||+|+||+|.+ .+|++|||||++|+++.+.++.|..++++.
T Consensus 46 --------~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~------------- 103 (431)
T 3iek_A 46 --------GFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATRATVLLMEIVLEDALKVMDE------------- 103 (431)
T ss_dssp --------SSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHCSS-------------
T ss_pred --------CCCcccCCEEEECCCChHHhccHHHHHH-cCCCCeEEEcHHHHHHHHHHHHHHHhhccc-------------
Confidence 146789999999999 99999999998 588999999999999999999887643210
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~ 237 (458)
..+ .+|++.++.++++++|++++++ ++++++++++||++||++|.|+.
T Consensus 104 ------------------------------~~y~~~~~~~~~~~~~~l~~~~~~~l-~g~~v~~~~agH~~Gs~~~~i~~ 152 (431)
T 3iek_A 104 ------------------------------PFFGPEDVEEALGHLRPLEYGEWLRL-GALSLAFGQAGHLPGSAFVVAQG 152 (431)
T ss_dssp ------------------------------CSSCHHHHHHHHHTEEECCTTCCEEE-TTEEEEEEECCSSTTCEEEEEEE
T ss_pred ------------------------------CCCCHHHHHHHHhccEEcCCCCeEEe-CCEEEEEEeCCCCcCceEEEEEE
Confidence 012 7889999999999999999999 78999999999999999999999
Q ss_pred CCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHHH
Q 012717 238 AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAF 317 (458)
Q Consensus 238 ~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~~ 317 (458)
++++|+|+||+....... ..++..+.++|+||+| +|| +++ .+ .+ +.++.++
T Consensus 153 ~~~~ilfsGD~~~~~~~~-l~~~~~~~~~D~LI~E---sTy---~~~--------~h------------~~--~~~~~~~ 203 (431)
T 3iek_A 153 EGRTLVYSGDLGNREKDV-LPDPSLPPLADLVLAE---GTY---GDR--------PH------------RP--YRETVRE 203 (431)
T ss_dssp TTEEEEECCCCCCTTSSS-SCCCCBCCCCSEEEEE---CTT---TTC--------CC------------CC--HHHHHHH
T ss_pred CCEEEEEeCCCCCCCCcc-cCCccccCCccEEEEE---ccc---CCc--------CC------------CC--hHHHHHH
Confidence 999999999997543211 1234456789999999 676 322 11 11 1224567
Q ss_pred HHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhcCCC
Q 012717 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP 396 (458)
Q Consensus 318 l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~ 396 (458)
|++.|.+++++||+||||+|++||+|||+++|+++|++ ++ +|||++||||.+++++|+.++|||+++.++.+..+++
T Consensus 204 l~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (431)
T 3iek_A 204 FLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKN 281 (431)
T ss_dssp HHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999988 55 9999999999999999999999999999998888788
Q ss_pred CC--Cceeeeeccc-cccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEE
Q 012717 397 LF--AHVKLIKEKK-IHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYL 453 (458)
Q Consensus 397 pF--~~~~~~~~~~-l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~ 453 (458)
|| ++++++++.+ ++.++...+||||||+||||++|.+.....-+|-|++|. |+|||-
T Consensus 282 pf~~~~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq 342 (431)
T 3iek_A 282 PFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQ 342 (431)
T ss_dssp TTCCTTEEECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCC
T ss_pred CCCCCCeEEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCC
Confidence 75 7777787765 677777779999999999999999999988999999999 667774
No 2
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=2e-50 Score=423.48 Aligned_cols=338 Identities=21% Similarity=0.296 Sum_probs=237.7
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++||+++ ++++|||+|+.++.+||+|||+.++.. + .. ..|+
T Consensus 12 m~i~~LG~~~-~vg~s~~li~~~~~~iLID~G~~~~~~---------------------~----------~~----~~~~ 55 (459)
T 2i7t_A 12 LLIRPLGAGQ-EVGRSCIILEFKGRKIMLDCGIHPGLE---------------------G----------MD----ALPY 55 (459)
T ss_dssp EEEEEEESSS-SSSSCEEEEEETTEEEEECCCCCTTSC---------------------G----------GG----GSCC
T ss_pred EEEEEEecCC-CCCCCEEEEEECCeEEEEeCCCCcCcc---------------------c----------cc----ccCc
Confidence 7999999985 899999999999999999999985410 0 00 1222
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
.. .+++.+||+|||||+ ||+|+||+|.++.+|++|||||++|.++.+.++.|+.++++. .
T Consensus 56 l~------~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~~~~~iy~t~~t~~l~~~~l~d~~~~~~~-------~----- 117 (459)
T 2i7t_A 56 ID------LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-------S----- 117 (459)
T ss_dssp GG------GSCGGGCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC-----------------
T ss_pred cc------ccCcccCcEEEECCCChhhhhhhHHHHHhcCCCCCEEechHHHHHHHHHHHHHHHHhcc-------c-----
Confidence 21 156789999999999 999999999877899999999999999999888876543321 0
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCC-ch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEE
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGC-PC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~ 236 (458)
.+. .+ .+++..++++++.++|++++++ ++++++++++||++|+++|.|+
T Consensus 118 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~v~~~~~GH~~Gs~~~~i~ 168 (459)
T 2i7t_A 118 ----------------------------ADDMLYTETDLEESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIE 168 (459)
T ss_dssp --------------------------------CCCHHHHHHHGGGEEEECTTCCEEE-TTEEEEEEECCSSTTCEEEEEE
T ss_pred ----------------------------ccccccCHHHHHHHHhccEEeCCCCEEEE-CCEEEEEEeCCCccCcEEEEEE
Confidence 000 12 6778888889999999999999 6799999999999999999999
Q ss_pred eCCeeEEEecCCCCCCCCC-CcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHH
Q 012717 237 GAKGNIAYISGSNFASGHA-MDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKL 315 (458)
Q Consensus 237 ~~~~~i~ytgD~~~~~~~~-~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl 315 (458)
.++++|+|+||+....... ..... ...++|+||+| +|| +++ .+ .+ ..++.
T Consensus 169 ~~~~~il~sGD~~~~~~~~~~~~~~-~~~~~D~Li~E---sty---~~~--------~~------------~~--~~~~~ 219 (459)
T 2i7t_A 169 IAGVKLLYTGDFSRQEDRHLMAAEI-PNIKPDILIIE---STY---GTH--------IH------------EK--REERE 219 (459)
T ss_dssp ETTEEEEECCSCCCC-----CCCCC-CSSCCSEEEEE---CTT---TTC--------CC------------CC--HHHHH
T ss_pred ECCcEEEEeCCCCCCCCcccCCCCc-CCCCCeEEEEC---CCC---CCC--------CC------------CC--hHHHH
Confidence 9999999999987543111 11111 12479999999 576 321 11 11 12244
Q ss_pred HHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhC-CCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhc
Q 012717 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS-SLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFS 393 (458)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~-~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~ 393 (458)
++|++.|.+++++||+|+||+|++||+|||+++|+++|+++ .++ +|||++||||.+++++|+.+.+||+++.++.+.
T Consensus 220 ~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~- 298 (459)
T 2i7t_A 220 ARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN- 298 (459)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSSSSHHHHHHHHHHHHHHCGGGTTSCEEEC----------------------------
T ss_pred HHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhc-
Confidence 66999999999999999999999999999999999999986 344 999999999999999999999999998887654
Q ss_pred CCCCC--CceeeeeccccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCeE-EEEEEe
Q 012717 394 GDPLF--AHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGI-ITLYLF 454 (458)
Q Consensus 394 ~~~pF--~~~~~~~~~~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~~-~~~~~~ 454 (458)
..+|| ++++.+++.+ .++ ..+|+||||+|+||++|.++....-++-|++|.| +|||..
T Consensus 299 ~~~p~~~~~~~~~~~~~--~~~-~~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~ 359 (459)
T 2i7t_A 299 INNPFVFKHISNLKSMD--HFD-DIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCV 359 (459)
T ss_dssp ------CCSEEECCCTT--SSC-CCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCC
T ss_pred ccCCcCCCcceeeCCHH--Hhc-CCCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCC
Confidence 45675 5665554432 233 3589999999999999999888888999999995 788854
No 3
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=100.00 E-value=2.7e-45 Score=401.79 Aligned_cols=339 Identities=15% Similarity=0.200 Sum_probs=254.4
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|+|++|+||.++++++||||+.++.+||||||+..... .| ..+ ..+
T Consensus 1 m~~t~L~gg~~ev~~n~~LIe~~~~~ILID~G~~~~~~-~~------------------------------~~~---l~~ 46 (717)
T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKV-SY------------------------------EQC---IKY 46 (717)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTS-CH------------------------------HHH---HHH
T ss_pred CEEEEEeecCCCCCCCEEEEEECCeEEEEeCCCCcccc-hh------------------------------hhH---HHH
Confidence 89999988878999999999999999999999985310 00 000 000
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccC----CcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEG----FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~g----f~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~ 154 (458)
.. .+.+ +||+|||||+ ||+|+||+|.++++ .++|||||++|.++++.++.|.+..+.. .
T Consensus 47 L~------~~~~-~IdaVlLTH~H~DHiGgLp~L~~~~~~g~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~-------~- 111 (717)
T 2i7x_A 47 WE------KVIP-EIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGV-------I- 111 (717)
T ss_dssp HH------TTGG-GCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTS-------S-
T ss_pred HH------hcCC-CCCEEEECCCChHHHCCHHHHHHhhhhcccCCceEEecchhHHHHHHHHHHHHHhhcc-------c-
Confidence 00 0233 8999999999 99999999997542 3799999999999999999887643210 0
Q ss_pred CCCccchhhhHhhhchhhhhhhhcCCCCCCCCCC--Cch-HHHHHHHHhcceeeCCCCEEEe---CCcEEEEEecCCCCC
Q 012717 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGG--CPC-IAHVKDCISKVQTLRFGEEACY---NGILIIKAFSSGLDI 228 (458)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~dv~~~~~~i~~v~y~e~v~i---~g~l~i~~~~aGH~l 228 (458)
. .+ .++ .+++..++.+++++.|++.+++ .++++|+++++||++
T Consensus 112 ---~----------------------------~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~ 160 (717)
T 2i7x_A 112 ---G----------------------------PYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (717)
T ss_dssp ---S----------------------------SBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred ---c----------------------------ccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCC
Confidence 0 01 122 6788888999999999999999 467999999999999
Q ss_pred CceEEEEEeCCeeEEEecCCCCCC-CCCCcCCC--------CCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhh
Q 012717 229 GACNWIISGAKGNIAYISGSNFAS-GHAMDFDY--------RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELM 299 (458)
Q Consensus 229 Gsa~~~I~~~~~~i~ytgD~~~~~-~~~~~~d~--------~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~ 299 (458)
|+++|.|+.++.+|+|+||+.... .+....+. ..+.++|+||+| +|+ +++ .++
T Consensus 161 Gs~~~~I~~~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~E---sTy---~~~--------~h~---- 222 (717)
T 2i7x_A 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITT---LDR---FGS--------SQP---- 222 (717)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEEC---CSC---CCC--------SSC----
T ss_pred CcEEEEEEeCCCEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEc---CCC---CCC--------CCC----
Confidence 999999999999999999987543 22222221 235689999999 565 322 111
Q ss_pred hccCCCcccHHHHHHHHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHH----HhCCCc-ccEEEEchhHHHHHH
Q 012717 300 NSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM----ECSSLK-IPIYIISSVAEELLA 374 (458)
Q Consensus 300 ~s~~~~~~~~~~~erl~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~----~~~~l~-~pIy~~s~~a~~~~~ 374 (458)
. . +++++|++.|.+++++||+||||+|++||+|||+++|.++| +.+.++ +|||++|+++.++++
T Consensus 223 --------~-~--~~~~~l~~~i~~~l~~~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~ 291 (717)
T 2i7x_A 223 --------F-K--KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLT 291 (717)
T ss_dssp --------H-H--HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHH
T ss_pred --------C-H--HHHHHHHHHHHHHHhCCCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHH
Confidence 1 1 24557899999999999999999999999999999999998 234454 999999999999999
Q ss_pred HHHhhHHhhhHHHHHhhhcCC--CCC---CceeeeeccccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-E
Q 012717 375 YTNTIPEWLCKQRQEKLFSGD--PLF---AHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-I 448 (458)
Q Consensus 375 ~~~~~~ewl~~~~~~~~~~~~--~pF---~~~~~~~~~~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~ 448 (458)
+|+.+.+||++..++.+...+ .|| .++++ .+. ..++...+|+||+|++ ++|++.-....|+.|+++. |
T Consensus 292 i~~~~~e~l~~~~~~~~~~~~~~~pf~~~~~l~~-~~~--~~l~~~~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VI 365 (717)
T 2i7x_A 292 YAKSMLEWLSPSLLKTWENRNNTSPFEIGSRIKI-IAP--NELSKYPGSKICFVSE---VGALINEVIIKVGNSEKTTLI 365 (717)
T ss_dssp HHHTCGGGSCHHHHHHHHSSSSCCTTCCTTTEEE-CCG--GGGGGCCSCEEEEEES---CHHHHHHHHHHHSSCTTEEEE
T ss_pred HHHHHHHHhChHHHHHHhcccccCCccccccCcc-CCH--HHHhhCCCCEEEEECC---CCHHHHHHHHHHcCCCcCEEE
Confidence 999999999998866554433 355 55555 332 3345555798888765 7888876677889999999 6
Q ss_pred EEEEEe
Q 012717 449 ITLYLF 454 (458)
Q Consensus 449 ~~~~~~ 454 (458)
+|+|-.
T Consensus 366 f~g~~~ 371 (717)
T 2i7x_A 366 LTKPSF 371 (717)
T ss_dssp ECSSCC
T ss_pred EEcCCC
Confidence 666643
No 4
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=1.7e-44 Score=393.15 Aligned_cols=348 Identities=19% Similarity=0.235 Sum_probs=265.6
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++||+++ ++++|||||+.++.+||+|||+...... ... ...|.
T Consensus 189 m~i~~LG~~~-~vg~s~~LI~~~~~~ILID~G~~~~~~~------------------------------~g~---~~l~~ 234 (651)
T 3af5_A 189 IRITGLGGFR-EVGRSALLVQTDESFVLVDFGVNVAMLN------------------------------DPY---KAFPH 234 (651)
T ss_dssp EEEEEEECSS-SSSCCEEEEEESSCEEEECCCCCGGGTT------------------------------CHH---HHSCC
T ss_pred eEEEEEecCC-CCCCcEEEEEECCcEEEEeCCCChhccc------------------------------cch---hhccc
Confidence 7899999984 8999999999999999999999854200 000 01232
Q ss_pred cccccccccc--CC--CcccEEEecCC--CCcchhhhhhcccC-CcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 012717 81 YKTVNNLHLW--NV--SFIDVVLISSP--MGMLGLPFLTRMEG-FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAE 153 (458)
Q Consensus 81 ~~~~~~~~~~--d~--~~IDaVlISHa--DH~g~LP~L~~~~g-f~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~ 153 (458)
+..+ .+ ++ .+||+|||||+ ||+|+||+|.+ .+ |++|||||.+|.++.+.++.|+..+++..
T Consensus 235 l~~~----~~g~~~~~~~Id~VllTH~H~DHiGglp~L~~-~~~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~------- 302 (651)
T 3af5_A 235 FDAP----EFQYVLREGLLDAIIITHAHLDHCGMLPYLFR-YNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSN------- 302 (651)
T ss_dssp TTCH----HHHHHHHTTCCCEEECSCSSHHHHTTHHHHHH-TTCCCSCEEECHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred ccch----hhccCcccCCCCEEEECCCChHhhcCHHHHHh-cCCCCceEEEcHHHHHHHHHHHHHHHHHhhhc-------
Confidence 1100 02 45 78999999999 99999999997 46 78999999999999998888877554310
Q ss_pred CCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceE
Q 012717 154 ESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN 232 (458)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~ 232 (458)
+ ...++ .++++.+..+++++++++.+++.++++++++++||++||++
T Consensus 303 ----------------------------~----~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~ 350 (651)
T 3af5_A 303 ----------------------------G----QDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAI 350 (651)
T ss_dssp ----------------------------T----CCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEE
T ss_pred ----------------------------c----cCCCCCHHHHHHhhhcEEEeCCCCEEEecCCEEEEEecCCCCcCcEE
Confidence 0 00123 67788888889999999999996679999999999999999
Q ss_pred EEEEeCCe--eEEEecCCCCCCC-CCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccH
Q 012717 233 WIISGAKG--NIAYISGSNFASG-HAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESV 309 (458)
Q Consensus 233 ~~I~~~~~--~i~ytgD~~~~~~-~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~ 309 (458)
|.|+.++. +++|+||+..... .....+ ..+.++|+||+| +|+ +++ ...+ .+
T Consensus 351 ~~i~~~~~~~~ilftGD~~~~~~~ll~~~~-~~~~~~DvLI~E---sT~---~~~------~~~h------------~s- 404 (651)
T 3af5_A 351 VHLHIGNGLHNIAITGDFKFIPTRLLEPAN-AKFPRLETLVME---STY---GGA------NDIQ------------MP- 404 (651)
T ss_dssp EEEEETTTTTCEEECCSCCCSCCSSCCCCC-CBCSSCSEEEEE---CTT---CST------TCCC------------CC-
T ss_pred EEEEECCCceEEEEeCCCCCCccccccccc-ccCCCCCEEEEC---CCC---CCC------CCCC------------CC-
Confidence 99999887 9999999975432 111111 125689999999 675 322 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHHHhhHHhhhHHHHH
Q 012717 310 EEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389 (458)
Q Consensus 310 ~~~erl~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~ 389 (458)
+.+..++|++.|.+++++||+||||+|++||+|||+++|.+++.++++++|||+++ ++.+++++|..+.+||++..++
T Consensus 405 -~~~~~~~l~~~i~~~l~~~g~vlIp~favgR~qell~~l~~~~~~~~l~~~I~~dg-~a~~~~~~~~~~~~~l~~~~~~ 482 (651)
T 3af5_A 405 -REEAEKRLIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDG-MIWEATAIHTAYPEYLSRRLRE 482 (651)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHHTTTCCCSCEEEES-SHHHHHHHHHTCGGGSCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhCCCEEEEeccCccHHHHHHHHHHHhhhhcCCCCcEEEec-hHHHHHHHHHHhHHhcCHHHHH
Confidence 12234568999999999999999999999999999999999999988889999877 9999999999999999999887
Q ss_pred hhh-cCCCCC--Cceeeeeccc-cccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEEe
Q 012717 390 KLF-SGDPLF--AHVKLIKEKK-IHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYLF 454 (458)
Q Consensus 390 ~~~-~~~~pF--~~~~~~~~~~-l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~~ 454 (458)
.++ .+.+|| ++...+++.+ +..+....+|+||||+|+|+++|.+.-....++.|+++. |+|||..
T Consensus 483 ~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~ 552 (651)
T 3af5_A 483 QIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQA 552 (651)
T ss_dssp HTTTSSCCSTTCTTEEECCSHHHHHHHHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCC
T ss_pred HHHhccCCCccCCceEEcCCHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 664 556777 4445555432 344422248999999999999999876666777788877 6677643
No 5
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=1.4e-43 Score=385.23 Aligned_cols=344 Identities=15% Similarity=0.196 Sum_probs=253.0
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++||+++ ++++|||||+.++.+||+|||+.... . .. ..|.
T Consensus 184 m~I~~LG~~~-evg~s~~LI~~~~~~ILID~G~~~~~--------------------------------~-~~---~l~~ 226 (640)
T 2xr1_A 184 VRVTALGGCK-EVGRSCFLLSTPESRILIDCGVNVGS--------------------------------D-EN---MTPY 226 (640)
T ss_dssp CEEEEEECSS-SSBCCEEEEECSSCEEEECCCCBCSS--------------------------------C-SS---CCCC
T ss_pred eEEEEEecCC-CCCCcEEEEEECCeEEEEeCCCCccc--------------------------------c-cc---cccc
Confidence 7999999984 89999999999999999999998531 0 00 0222
Q ss_pred cccccccccc-CCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012717 81 YKTVNNLHLW-NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG 157 (458)
Q Consensus 81 ~~~~~~~~~~-d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~ 157 (458)
+.. ..+ +..+||+|||||+ ||+|+||+|.+. +|++|||||.+|.++.+.++.|+.++++.. +
T Consensus 227 l~~----~~~~~~~~Id~VllTH~H~DHiGgl~~L~~~-~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~----g------ 291 (640)
T 2xr1_A 227 LYV----PEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY-GYEGPVYCTPPTRDLMVLLQLDYIDVAAKE----G------ 291 (640)
T ss_dssp TTS----TTTCSGGGCCEEECCSSCHHHHTTHHHHHHT-TCCSCEEECHHHHHHHHHHHHHHHHHHHHH----T------
T ss_pred ccc----cccCCcccCcEEEECCCChhhhccHHHHHhc-CCCCeEEECHHHHHHHHHHHHHHHHHhhhc----c------
Confidence 110 013 5778999999999 999999999973 788999999999999998888877554310 0
Q ss_pred ccchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEE
Q 012717 158 PQWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236 (458)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~ 236 (458)
...++ .++++.+..+++.+.+++.+++.++++++++++||++||++|.++
T Consensus 292 -----------------------------~~~~~~~~~~~~~~~~~~~l~~g~~i~l~gg~~v~~~~~GH~~Gs~~~~i~ 342 (640)
T 2xr1_A 292 -----------------------------KKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFH 342 (640)
T ss_dssp -----------------------------CCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEE
T ss_pred -----------------------------cCCCCCHHHHHHHHhceEEeCCCCEEEecCCEEEEEEcCCCCcCcEEEEEE
Confidence 00123 677888888899999999999966799999999999999999999
Q ss_pred eCCe--eEEEecCCCCCCC-CCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHH
Q 012717 237 GAKG--NIAYISGSNFASG-HAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEME 313 (458)
Q Consensus 237 ~~~~--~i~ytgD~~~~~~-~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~e 313 (458)
.++. +++|+||+..... .....+ ....++|+|++| +|+ +++ ...+. + +.+
T Consensus 343 ~~~~~~~ilftGD~~~~~~~ll~~~~-~~~~~~DvLi~E---sT~---g~~------~~~h~------------s--~~~ 395 (640)
T 2xr1_A 343 IGDGLHNVVFTGDYKYEKTRLFDPAV-NKFPRVETVISE---ATY---GNA------NAFQP------------A--LKD 395 (640)
T ss_dssp ETTTTEEEEECCSCCSSCCSSCCCCC-CBCSCCSEEEEE---CTT---CST------TCCCC------------C--HHH
T ss_pred ECCceEEEEEECCCCCCCcccccccc-ccCCCCcEEEEC---CCC---CCC------ccCCC------------C--HHH
Confidence 9887 9999999975432 111111 124589999999 565 322 10111 1 122
Q ss_pred HHHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhh
Q 012717 314 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF 392 (458)
Q Consensus 314 rl~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~ 392 (458)
..++|.+.|.+++++||+||||+|++||.||+++.|.+++.++.++ +|||++| ++.+++++|..+.+||++..++.++
T Consensus 396 ~~~~l~~~i~~~~~~~g~vlIp~favGR~qell~~l~~~~~~~~~~~~~V~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~ 474 (640)
T 2xr1_A 396 AEKHLQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDG-MIWEATAIHATHPEYLNNDLRKLIF 474 (640)
T ss_dssp HHHHHHHHC--------CEEEECCTTTHHHHHHHHHHHHHHHTSSCCCCEEEES-SHHHHHHHHHHCGGGSCHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecccchHHHHHHHHHHHHHhCCCCCCcEEEEh-HHHHHHHHHHHhHhhhcHHHHHHHH
Confidence 3466889999999999999999999999999999999999998886 9999987 9999999999999999999887664
Q ss_pred -cCCCCC--Cceeeeeccc-cccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEE
Q 012717 393 -SGDPLF--AHVKLIKEKK-IHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYL 453 (458)
Q Consensus 393 -~~~~pF--~~~~~~~~~~-l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~ 453 (458)
.+.+|| ++...+++.+ +..++...+|+||||+|+|+++|.+.-....++.|+++. |+|+|.
T Consensus 475 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~ 540 (640)
T 2xr1_A 475 QKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQ 540 (640)
T ss_dssp -----CTTCTTEEEEC-CHHHHHC----CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCC
T ss_pred hcccCcccCCceEEeCCHHHHHHHhcCCCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCC
Confidence 556777 4445555532 444433258999999999999999776666777888887 667664
No 6
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.8e-43 Score=384.35 Aligned_cols=347 Identities=18% Similarity=0.278 Sum_probs=265.3
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++||++ +++++|||||+.++.+||+|||+...... + .. ..|.
T Consensus 180 m~i~~LG~~-~evg~s~~lI~~~~~~ILID~G~~~~~~~---------------------~----------~~---~~~~ 224 (636)
T 2ycb_A 180 ARLTAMGGF-REVGRSCLYLQTPNSRVLLDCGVNVAGGD---------------------D----------KN---SYPY 224 (636)
T ss_dssp CEEEEEESS-SSSSCCEEEEECSSCEEEEEECCCCSSCC---------------------H----------HH---HSCC
T ss_pred EEEEEEecC-CCCCCCEEEEEECCeEEEEeCCCCccccc---------------------c----------hh---hccc
Confidence 799999998 48999999999999999999999854100 0 00 0122
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
+.. ..++..+||+|||||+ ||+|+||+|.+. ++++|||||.+|.++.+.++.|+..+++..
T Consensus 225 l~~----l~~~~~~Id~VlLTH~H~DHiGglp~L~~~-~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~------------ 287 (636)
T 2ycb_A 225 LNV----PEFTLDSLDAVIITHAHLDHSGFLPYLYHY-GYDGPVYCTAPTRDLMTLLQLDHIDIAHRE------------ 287 (636)
T ss_dssp TTS----TTCCTTTCCEEECSSSSHHHHTTHHHHHHT-TCCSCEEECHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ccc----ccCCcccCcEEEECCCChHHhcCHHHHHhc-CCCCeEEEcchHHHHHHHHHHHHHHhhhhc------------
Confidence 110 0146789999999999 999999999973 788999999999999998888876554310
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~ 237 (458)
+ ...++ .++++.++.+++.+.+++++++.++++++++++||++|+++|.|+.
T Consensus 288 -----------------------~----~~~~~~~~~i~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~ 340 (636)
T 2ycb_A 288 -----------------------D----EPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHI 340 (636)
T ss_dssp -----------------------T----CCCSCCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECCSSTTCEEEEEEE
T ss_pred -----------------------C----CCCCCCHHHHHHHHhceEEeCCCCEEEecCCeEEEEeCCCCCCCcEEEEEEE
Confidence 0 00123 6778888888999999999999667999999999999999999999
Q ss_pred CCe--eEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHH
Q 012717 238 AKG--NIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKL 315 (458)
Q Consensus 238 ~~~--~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl 315 (458)
++. +|+|+||+..............+.++|+||+| +|+ ++++ ..+ .+ +.+..
T Consensus 341 ~~~~~~ilftGD~~~~~~~ll~~~~~~~~~~D~LI~E---sT~---~~~~------~~h------------~s--~~~~~ 394 (636)
T 2ycb_A 341 GDGQHNMVYTGDFKYEQSRLLEAAANRFPRIETLVME---STY---GGHE------DVQ------------PS--RNRAE 394 (636)
T ss_dssp TTTTTCEEECCSCCSSCCSSSCCCCCCCSCCSEEEEE---CTT---CSGG------GCC------------CC--HHHHH
T ss_pred CCCeEEEEEECCCCCCcccccCCcccCCCCCeEEEEC---CCC---CCCC------CCC------------CC--HHHHH
Confidence 887 99999999754321111110135689999999 665 3221 001 01 12234
Q ss_pred HHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhh-c
Q 012717 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-S 393 (458)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~ 393 (458)
++|.+.|.+++++||+||||+|++||+|||+++|.++|.++.++ +|||+++ ++.++++++..+.+||++..++.++ .
T Consensus 395 ~~l~~~i~~~~~~~g~vlIp~fa~GR~qell~~l~~~~~~~~~~~~~V~~dg-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 473 (636)
T 2ycb_A 395 KELVKTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQIFHM 473 (636)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCTTTHHHHHHHHHHHHHHTTSSCCCCEEEEH-HHHHHHHHHHHSGGGSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCEEEEEECCCcHHHHHHHHHHHHHHhCCCCCCeEEEeh-HHHHHHHHHHHhHHhhCHHHHHHHHhc
Confidence 56889999999999999999999999999999999999988886 9999876 9999999999999999999877664 5
Q ss_pred CCCCC--Cceeeeecc-ccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEEe
Q 012717 394 GDPLF--AHVKLIKEK-KIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYLF 454 (458)
Q Consensus 394 ~~~pF--~~~~~~~~~-~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~~ 454 (458)
+.+|| ++...+++. ++..++ ..+|+||||+|+|+++|.+......++.|+++. |+|||..
T Consensus 474 ~~~~f~~~~~~~~~~~~~~~~l~-~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~ 537 (636)
T 2ycb_A 474 GHNPFISDIFHKVNGMDERREIV-EGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQA 537 (636)
T ss_dssp CCCGGGCTTEEEECCHHHHHHHH-HSSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCC
T ss_pred cCCcccCCceEEeCCHHHHHHhc-cCCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCC
Confidence 56777 444555543 344454 248999999999999998766666777888888 6677753
No 7
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.97 E-value=1.1e-29 Score=271.63 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=184.0
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++|||. +|+|+|||+++.++..||+|||+..... +....+.+ .|.
T Consensus 9 i~i~~lGg~-~eiG~n~~li~~~~~~iLID~G~~~~~~----------------------------~~~g~d~i---ip~ 56 (555)
T 3zq4_A 9 TAVFALGGL-GEIGKNTYAVQFQDEIVLIDAGIKFPED----------------------------ELLGIDYV---IPD 56 (555)
T ss_dssp EEEEEEESB-SSSSCCEEEEEETTEEEEEEECCBCCCT----------------------------TSTTCSEE---EEC
T ss_pred EEEEEcCCC-CccCCEEEEEEECCeEEEEeCCCCCCcc----------------------------cccccccc---ccC
Confidence 578999998 5999999999999999999999864210 00000001 111
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
+.. ...+..+||+|||||+ ||+|+||+|.+. |++|||||++|.++.+..+.+...
T Consensus 57 ~~~----l~~~~~~Id~I~lTH~H~DHiggl~~l~~~--~~~pIy~t~~t~~ll~~~l~~~~~----------------- 113 (555)
T 3zq4_A 57 YTY----LVKNEDKIKGLFITHGHEDHIGGIPYLLRQ--VNIPVYGGKLAIGLLRNKLEEHGL----------------- 113 (555)
T ss_dssp CHH----HHTTTTTEEEEEESCCCHHHHTTHHHHHTT--CCCCEEECHHHHHHHHHHHHHHST-----------------
T ss_pred HHH----HhcCccCCCEEEECCCchhhhCCHHHHHHh--cCceEEECHHHHHHHHHHHHHcCc-----------------
Confidence 110 0135789999999999 999999999974 689999999999977665543100
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCC-CCCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH-~lGsa~~~I~~ 237 (458)
+ .+ ..++.+.+++++++ +++++++++++| ++|+++|.|+.
T Consensus 114 -~----------------------------~~---------~~~~~v~~g~~~~i-g~~~v~~~~~~H~~pgs~~~~i~~ 154 (555)
T 3zq4_A 114 -L----------------------------RQ---------TKLNIIGEDDIVKF-RKTAVSFFRTTHSIPDSYGIVVKT 154 (555)
T ss_dssp -T----------------------------TT---------CCEEECCTTCCEEE-TTEEEEEEEEBCSSSSEEEEEEEE
T ss_pred -c----------------------------CC---------CceEEeCCCCEEEE-CCEEEEEEeCCCCCcCcEEEEEEE
Confidence 0 00 14688999999999 679999999999 79999999999
Q ss_pred CCeeEEEecCCCCCCCCCC-cCCCCCC-----CCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHH
Q 012717 238 AKGNIAYISGSNFASGHAM-DFDYRAI-----QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEE 311 (458)
Q Consensus 238 ~~~~i~ytgD~~~~~~~~~-~~d~~~l-----~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~ 311 (458)
++.+++||||+........ ..|...+ +++|+||+| +|+ +++| +.. . .+
T Consensus 155 ~~~~il~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~e---sT~---~~~~------~~~------------~--se 208 (555)
T 3zq4_A 155 PPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSD---STN---SENP------EFT------------M--SE 208 (555)
T ss_dssp TTEEEEECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEE---CTT---TTCC------SCC------------C--CH
T ss_pred CCcEEEEeCCCCCCCCcCcCccCHHHHHHhcccCCcEEEec---Ccc---cCCC------CCC------------C--CH
Confidence 9999999999975432111 2233333 479999999 675 3332 111 0 11
Q ss_pred HHHHHHHHHHHHHHHHc-CCeEEEecCc--hhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHHHhh
Q 012717 312 MEKLAFICSCAIDSVKA-GGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTI 379 (458)
Q Consensus 312 ~erl~~l~~~I~~tl~~-gG~VLIPv~a--~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~ 379 (458)
.++.+.+.+++++ +|+|+||+|+ +||+||++..+.++ ..+|+++++.+.+++++++.+
T Consensus 209 ----~~v~~~i~~~~~~~~grvii~~fasnv~R~q~il~~a~~~------gr~v~v~grs~~~~~~~~~~~ 269 (555)
T 3zq4_A 209 ----RRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQN------GRKVAVFGRSMESAIEIGQTL 269 (555)
T ss_dssp ----HHHHHHHHHHHHHCCSCEEEECCTTCHHHHHHHHHHHHTT------TCEEEEESHHHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHHhCCCEEEEEEChhHHHHHHHHHHHHHHH------CCEEEEeCHHHHHHHHHHHHc
Confidence 2366777788876 9999999999 99999999988664 478999999999998888775
No 8
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.96 E-value=1e-27 Score=257.00 Aligned_cols=256 Identities=13% Similarity=0.082 Sum_probs=175.8
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++|||+ ++++++||+|+.++..||+|||+.+.... ......+ .|.
T Consensus 17 ~~i~~LGg~-~eig~n~~li~~~~~~iLID~G~~~~~~~----------------------------~~g~~~~---~p~ 64 (562)
T 3bk2_A 17 VEIIPLGGM-GEIGKNITVFRFRDEIFVLDGGLAFPEEG----------------------------MPGVDLL---IPR 64 (562)
T ss_dssp EEEEEEESB-SBSSCCEEEEEETTEEEEECCCCBCCCTT----------------------------STTCCEE---EEC
T ss_pred EEEEEecCC-CCcCCCEEEEEECCeEEEEECCCCCCccc----------------------------ccccccc---ccc
Confidence 789999998 48999999999999999999998643100 0000000 121
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCC----cceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF----SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf----~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~ 154 (458)
+.. ...+..+||+|||||+ ||+|+||+|.+.+ + ++|||+|++|.++.+..+.+. +
T Consensus 65 ~~~----l~~~~~~Id~I~iTH~H~DHiggl~~L~~~~-~~~~~~~pIy~~~~t~~~l~~~l~~~-----------~--- 125 (562)
T 3bk2_A 65 VDY----LIEHRHKIKAWVLTHGHEDHIGGLPFLLPMI-FGKESPVPIYGARLTLGLLRGKLEEF-----------G--- 125 (562)
T ss_dssp CHH----HHHTGGGEEEEECCCCCHHHHTTHHHHHHHH-HCSCCCSEEEEEHHHHHHHHHHHHHT-----------T---
T ss_pred hhh----hhcCcccCcEEEECCCChHHhCCHHHHHHhh-ccccCCceEEeCHHHHHHHHHHHHHc-----------C---
Confidence 110 0125678999999999 9999999999742 2 689999999998766554321 0
Q ss_pred CCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCC-CCCceEE
Q 012717 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNW 233 (458)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH-~lGsa~~ 233 (458)
++ + ....++.+++++.+++.++++|++++++| ++||++|
T Consensus 126 --------------~~-------------------~-------~~~~~~~v~~g~~~~lg~~~~v~~~~~~H~~~gs~~~ 165 (562)
T 3bk2_A 126 --------------LR-------------------P-------GAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGV 165 (562)
T ss_dssp --------------CC-------------------S-------TTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEE
T ss_pred --------------CC-------------------c-------CCceEEEECCCCEEEeCCCEEEEEEECCCCCcccEEE
Confidence 00 0 00156789999999994339999999999 6999999
Q ss_pred EEEeCCeeEEEecCCCCCCCCCC--cCCCCCC-----CCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCc
Q 012717 234 IISGAKGNIAYISGSNFASGHAM--DFDYRAI-----QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYD 306 (458)
Q Consensus 234 ~I~~~~~~i~ytgD~~~~~~~~~--~~d~~~l-----~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~ 306 (458)
.|+.++.+++|+||+........ ..|...+ +++|+||+| +|+ +++| .+..
T Consensus 166 ~i~~~~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~E---sT~---~~~~-----g~~~------------ 222 (562)
T 3bk2_A 166 VIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIAD---ATN---AERP-----GYTP------------ 222 (562)
T ss_dssp EEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEE---CTT---TTCC-----SCCC------------
T ss_pred EEEECCeEEEEcCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEec---ccC---CCCC-----CCCC------------
Confidence 99999999999999875432111 1222211 479999999 565 2222 1110
Q ss_pred ccHHHHHHHHHHHHHHHHHHH-cCCeEEEecCc--hhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHHHhhHHhh
Q 012717 307 ESVEEMEKLAFICSCAIDSVK-AGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWL 383 (458)
Q Consensus 307 ~~~~~~erl~~l~~~I~~tl~-~gG~VLIPv~a--~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl 383 (458)
.+ ..+.+.+.++++ .+|+|++|+|+ +||+||+++.+.++ ..|||+++....+++++++.. +|+
T Consensus 223 ---~e----~~v~~~l~~~~~~~~grvii~~fas~~~r~q~il~~a~~~------~r~V~v~g~s~~~~~~~~~~~-g~l 288 (562)
T 3bk2_A 223 ---SE----MEIAKELDRVIGRAPGRVFVTTFASHIHRIQSVIWAAEKY------GRKVAMEGRSMLKFSRIALEL-GYL 288 (562)
T ss_dssp ---CH----HHHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHT------TCEEEEECHHHHHHHHHHHHT-TSC
T ss_pred ---hH----HHHHHHHHHHHHhCCCEEEEEEccccchHHHHHHHHHHHh------CCEEEEEChHHHHHHHHHHhc-Ccc
Confidence 01 124445556664 68999999999 99999999987654 258887554444777777643 555
Q ss_pred h
Q 012717 384 C 384 (458)
Q Consensus 384 ~ 384 (458)
+
T Consensus 289 ~ 289 (562)
T 3bk2_A 289 K 289 (562)
T ss_dssp C
T ss_pred c
Confidence 3
No 9
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.92 E-value=1.4e-24 Score=225.18 Aligned_cols=278 Identities=11% Similarity=0.026 Sum_probs=168.8
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++||++ ++++++||+|+.++.+||+|||+.......+ |... ..+..+..-..+.+.+....
T Consensus 7 m~i~~lG~~-~~~g~n~~li~~~~~~iLiD~G~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~l~~~~-- 70 (429)
T 2az4_A 7 TTVTFHSGI-LTIGGTVIEVAYKDAHIFFDFGTEFRPELDL-PDDH------------IETLINNRLVPELKDLYDPR-- 70 (429)
T ss_dssp EEEEEEECT-TSSSCCEEEEEETTEEEEECCCCCCCTTCCC-SCCC------------HHHHHHTTSSCCCSSCBCGG--
T ss_pred eEEEEeeCC-CccCCeEEEEEECCeEEEEecCCCCCcccCC-Ccch------------hhhccCCcccCCchhhhccc--
Confidence 789999998 4899999999999999999999986321000 0000 00000000000000000000
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
...|.++...+..+||+|||||+ ||+|+||+|.+ ++|||+|+.|.++.+.+..+ + .
T Consensus 71 ~~~p~~~~~~~~~~i~~v~lTH~H~DHiggl~~l~~----~~~iy~~~~~~~~~~~~~~~------------~------~ 128 (429)
T 2az4_A 71 LGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDP----AVPLYTLKETKMILNSLNRK------------G------D 128 (429)
T ss_dssp GCCCCCSSCCCCCSEEEEECSCSCHHHHTTGGGBCT----TSCEEEEHHHHHHHHHHTTT------------S------C
T ss_pred ccccchhhhhccccCCEEEECCchHHHhCcHhHhcC----CCCEEECHHHHHHHHHHHHh------------C------c
Confidence 00011111246789999999999 99999999975 57999999998865432110 0 0
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCC-CCCceEEEEEe
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISG 237 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH-~lGsa~~~I~~ 237 (458)
.|. +.. .+......+++.+.+++.+++ ++++|+++++|| +.|+++|.|+.
T Consensus 129 ~~~--------~~~--------------------~~~~~~~~~~~~~~~g~~~~~-g~~~v~~~~~~H~~~gs~~~~i~~ 179 (429)
T 2az4_A 129 FLI--------PSP--------------------FEEKNFTREMIGLNKNDVIKV-GEISVEIVPVDHDAYGASALLIRT 179 (429)
T ss_dssp SSC--------CCT--------------------TSCTTCCCCCEEECTTCEEEE-TTEEEEEEECCCSSTTCEEEEEEE
T ss_pred ccc--------ccc--------------------cccccccceEEEeCCCCeEEE-CCEEEEEEECCCCChhhEEEEEEe
Confidence 010 000 000000125788999999999 579999999999 79999999999
Q ss_pred CCeeEEEecCCCCCCCCCCc--CCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHH
Q 012717 238 AKGNIAYISGSNFASGHAMD--FDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKL 315 (458)
Q Consensus 238 ~~~~i~ytgD~~~~~~~~~~--~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl 315 (458)
++.+++|+||+........+ .-....+++|+||+| +|+ ++++......+.. . .. .+
T Consensus 180 ~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~E---st~---~~~~~~~~~~~~~---------~-~~--s~---- 237 (429)
T 2az4_A 180 PDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMME---GVS---ISFPEREPDPAQI---------A-VV--SE---- 237 (429)
T ss_dssp TTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEE---CCG---GGSCCCCCCTTBC---------C-CC--SH----
T ss_pred CCcEEEECCCcccCCCchHHHHHHHHhccCCCEEEEC---CCC---cCcccccccccCC---------C-CC--CH----
Confidence 99999999998643211000 001123589999999 565 2221000000000 0 00 11
Q ss_pred HHHHHHHHHHHHc-CCeEEEecCc---hhhHHHHHHHHHHHHHhCCCcccEEEEchhHHHHHHHH
Q 012717 316 AFICSCAIDSVKA-GGSVLIPINR---VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYT 376 (458)
Q Consensus 316 ~~l~~~I~~tl~~-gG~VLIPv~a---~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~ 376 (458)
.++.+.+.+++++ +|+++||.+. ++|+|+++ .+. ..|||++++++..+++++
T Consensus 238 ~~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~a------~~~---gr~v~~~g~~~~~~~~~~ 293 (429)
T 2az4_A 238 EDLVQHLVRLELENPNRQITFNGYPANVERFAKII------EKS---PRTVVLEANMAALLLEVF 293 (429)
T ss_dssp HHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHHH------HHC---SSEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccchHHHHHHHH------HHh---CCEEEEEChhHHHHHhhc
Confidence 2355566676666 4569999988 88999881 122 369999999998888875
No 10
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.86 E-value=9.5e-22 Score=199.85 Aligned_cols=173 Identities=11% Similarity=0.070 Sum_probs=127.9
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (458)
..+||+|||||+ ||+|+||. ++++|||||++|.++.+..+. . .
T Consensus 49 ~~~IdaI~lTH~H~DHiggl~~-----~~~~pIy~s~~t~~ll~~~l~----~----------~---------------- 93 (367)
T 4b87_A 49 VEGCTAYFLTHFHSDHYAGLSK-----HFTFPVYCSEITGNLLKNKLH----V----------Q---------------- 93 (367)
T ss_dssp CTTCCEEECCCCCHHHHTTCST-----TCCSCEEECHHHHHHHHHHSC----C----------C----------------
T ss_pred ccCCcEEEECcChHHHhCCccc-----ccCCcEEECHHHHHHHHHHhc----c----------c----------------
Confidence 468999999999 99999992 468999999999885432110 0 0
Q ss_pred hhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEe-CCeeEEEecCC
Q 012717 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG-AKGNIAYISGS 248 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~-~~~~i~ytgD~ 248 (458)
. ..++.+++++++.+ ++++|+++++||++|+++|.|+. ++.+|+|+||+
T Consensus 94 --------------------~---------~~~~~l~~g~~~~i-g~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~ 143 (367)
T 4b87_A 94 --------------------E---------QYIHPLPLDTECIV-NGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDF 143 (367)
T ss_dssp --------------------G---------GGEEECCBTSCEEE-TTEEEEEEECSSSTTCEEEEEECTTSCEEEECCSC
T ss_pred --------------------c---------ceEEEeCCCCEEEE-CCEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCc
Confidence 0 24678899999999 67999999999999999999997 55679999999
Q ss_pred CCCCCCCCcCCCCCC--CCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 012717 249 NFASGHAMDFDYRAI--QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSV 326 (458)
Q Consensus 249 ~~~~~~~~~~d~~~l--~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~~l~~~I~~tl 326 (458)
........ ..+ .++|+||+| +|+ +++ ...+ .+ +.+.++++++.+.+++
T Consensus 144 ~~~~~~~~----~~l~~~~~D~Li~E---sTy---~~~------~~~~------------ps--~~~~~~~~~~~i~~~~ 193 (367)
T 4b87_A 144 RADPSMER----SLLADQKVHMLYLD---TTY---CSP------EYTF------------PS--QQEVIRFAINTAFEAV 193 (367)
T ss_dssp CCCGGGGG----SGGGTSCCCEEEEC---CTT---CST------TCCC------------CC--HHHHHHHHHHHHHHHH
T ss_pred ccCcccch----hhhccCCCCEEEEe---ccc---CCC------CCCC------------CC--HHHHHHHHHHHHHHHH
Confidence 85432211 122 479999999 565 221 1111 11 2233455778888888
Q ss_pred HcCCeE--EEecCchhhHHHHHHHHHHHHHhCCCcccEEEE
Q 012717 327 KAGGSV--LIPINRVGVFLQLLEQIAIFMECSSLKIPIYII 365 (458)
Q Consensus 327 ~~gG~V--LIPv~a~Gr~qELl~~L~~~~~~~~l~~pIy~~ 365 (458)
+++|++ ++|+|++||.|++++++.++ ..+|++.
T Consensus 194 ~~~g~~~v~~~a~~igr~q~ll~ia~~~------g~ki~v~ 228 (367)
T 4b87_A 194 TLNPHALVVCGTYSIGKEKVFLAIADVL------GSKVGMS 228 (367)
T ss_dssp HHCTTEEEEEEESSSCCHHHHHHHHHHT------TCCEECC
T ss_pred HhCCCeEEEEccchhHHHHHHHHHHHHh------CCEEEEe
Confidence 878875 58999999999999998775 5788864
No 11
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=190.03 Aligned_cols=176 Identities=11% Similarity=0.088 Sum_probs=125.6
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (458)
.+||+|||||+ ||+||||++. ++|||||+.|+++.+..+.+ .
T Consensus 23 ~~i~ai~lTH~H~DHiggl~~l~-----~~pVy~s~~t~~ll~~~l~~--------------~----------------- 66 (336)
T 3zdk_A 23 GTARLFFLSHMHSDHTVGLSSTW-----ARPLYCSPITAHLLHRHLQV--------------S----------------- 66 (336)
T ss_dssp CSSCEEECCCCCGGGSTTCSTTC-----CSCEEECHHHHHHHHHHHCC--------------C-----------------
T ss_pred CCCCEEEECCChHHHHCchHHHc-----CCCEEecHHHHHHHHHhhhh--------------c-----------------
Confidence 57999999999 9999999974 57999999999876542210 0
Q ss_pred hhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeC------CcEEEEEecCCCCCCceEEEEEeCCeeEEE
Q 012717 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN------GILIIKAFSSGLDIGACNWIISGAKGNIAY 244 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~------g~l~i~~~~aGH~lGsa~~~I~~~~~~i~y 244 (458)
+ ..++.+++++.+.+. |+++|+++++||++|++++.|+.++.+|+|
T Consensus 67 -----------~-----------------~~~~~~~~~~~~~i~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~~~i~~ 118 (336)
T 3zdk_A 67 -----------K-----------------QWIQALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILY 118 (336)
T ss_dssp -----------T-----------------TTEEECCTTSEEEEESSSSSSCEEEEEEEECSSSTTCEEEEEEETTEEEEE
T ss_pred -----------c-----------------cceEecCCCCeEEecCcccccCCEEEEEEECCCCcceEEEEEEeCCceEEE
Confidence 0 135677788877652 679999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHHHHHHHHHH
Q 012717 245 ISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAID 324 (458)
Q Consensus 245 tgD~~~~~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~~l~~~I~~ 324 (458)
+||+...............+++|+||+| +|+ ++++ +.. . .+.+..+++.+.+.+
T Consensus 119 tGD~~~~~~~~~~~~l~~~~~vD~Li~D---sT~---~~~~------~~~------------p--se~~v~~~l~~~i~~ 172 (336)
T 3zdk_A 119 TGDFRYTPSMLKEPALTLGKQIHTLYLD---NTN---CNPA------LVL------------P--SRQEAAHQIVQLIRK 172 (336)
T ss_dssp CCSCCCCGGGGGCGGGSSCCCCSEEEEC---CTB---CCTT------CCC------------C--CHHHHHHHHHHHHHT
T ss_pred eCCCCCCcccccchhhhccCCccEEEEe---cCC---CCCC------CCC------------C--CHHHHHHHHHHHHHh
Confidence 9999643321111111135789999999 675 3221 111 1 112223344444444
Q ss_pred HHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCcccEEEEc
Q 012717 325 SVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIIS 366 (458)
Q Consensus 325 tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~~pIy~~s 366 (458)
+ .||+|+||+|++||.|+++.+..++ ..+|++.+
T Consensus 173 ~--~~g~vii~~f~vgR~q~i~~~a~~~------grkV~v~g 206 (336)
T 3zdk_A 173 H--PQHNIKIGLYSLGKESLLEQLALEF------QTWVVLSP 206 (336)
T ss_dssp C--TTSEEEEEECSSSCHHHHHHHHHHH------TCCEECCH
T ss_pred C--CCCcEEEeecchHHHHHHHHHHHHc------CCEEEEEh
Confidence 3 3789999999999999999988765 47888755
No 12
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.71 E-value=2.7e-17 Score=163.31 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=118.2
Q ss_pred CEEEEecCCCCcC----CCceEEEEE---CCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccc
Q 012717 1 MKFTCLCQGGGFN----FPPCHILNV---SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAND 73 (458)
Q Consensus 1 mkl~~Lg~~~~~v----~~sc~LLe~---~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (458)
|++++||++++.+ +.+||+|+. ++.+||+|||..... .
T Consensus 1 M~i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~iLiD~G~~~~~-----------------------------------~ 45 (320)
T 1y44_A 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQH-----------------------------------Q 45 (320)
T ss_dssp CEEEEEECBSSSCCSSCCBCEEEEEETTTTSEEEEECCCTTHHH-----------------------------------H
T ss_pred CEEEEEecCCCCCCccCCCCEEEEEEecCCCcEEEEECCHHHHH-----------------------------------H
Confidence 9999999986322 379999999 999999999986320 1
Q ss_pred cccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccC-----CcceEEEehHHHHHHHHHHHHHHHHHHhh
Q 012717 74 LIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEG-----FSAKIYITEAAARIGQLMMEELICMNMEY 146 (458)
Q Consensus 74 l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~g-----f~g~Iy~T~pT~~l~~~~L~d~~~~~~~~ 146 (458)
+. .. .+++.+||+|||||. ||+++||.|.+..+ ...+||+++.+.++.+.++.. ..
T Consensus 46 l~---~~--------~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~----~~-- 108 (320)
T 1y44_A 46 ML---HT--------TIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAV----TK-- 108 (320)
T ss_dssp HT---TS--------SCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHH----TT--
T ss_pred HH---Hc--------CCCHHHcCEEEEeCCChhhhCCHHHHHHHHHhcCCCCCEEEEeCHHHHHHHHHHHHh----hc--
Confidence 10 00 134668999999999 99999999876322 246899999997754433211 00
Q ss_pred hhhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCC
Q 012717 147 RQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL 226 (458)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH 226 (458)
.|. .+ + -+++.+..++.+++ ++++|++.+++|
T Consensus 109 ------------~~~-------------------------~~-~---------~~~~~~~~g~~~~~-~~~~v~~~p~~H 140 (320)
T 1y44_A 109 ------------THL-------------------------TY-P---------LAIQEIEEGIVFED-DQFIVTAVSVIH 140 (320)
T ss_dssp ------------CCC-------------------------SS-C---------EEEEECCSEEEEEC-SSEEEEEEECBS
T ss_pred ------------cCC-------------------------CC-c---------eEEEEcCCCceEec-CCEEEEEEEccC
Confidence 000 00 0 13556677778887 579999999999
Q ss_pred CCCceEEEEEe--------------------------------------------------CCeeEEEecCCCCCCCCCC
Q 012717 227 DIGACNWIISG--------------------------------------------------AKGNIAYISGSNFASGHAM 256 (458)
Q Consensus 227 ~lGsa~~~I~~--------------------------------------------------~~~~i~ytgD~~~~~~~~~ 256 (458)
..++.+|.++. ++++|+|+||+....
T Consensus 141 ~~~~~gy~i~~~~~~~~~~~~~~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~~~~~~~~g~~i~~sgDt~~~~---- 216 (320)
T 1y44_A 141 GVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSD---- 216 (320)
T ss_dssp SSSBEEEEEEECCBCCCC--------------------------------------CCCCBCCCEEEECCSCBCCH----
T ss_pred CCCcceEEEecCCCcCccCHHHHHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHHhcccCCCCCEEEEeCCCCCHH----
Confidence 99999999974 467999999987432
Q ss_pred cCCCCCCCCCcEEEEc
Q 012717 257 DFDYRAIQGSDLILYS 272 (458)
Q Consensus 257 ~~d~~~l~~~D~Li~e 272 (458)
. -...++++|+||+|
T Consensus 217 ~-~~~~~~~~D~li~E 231 (320)
T 1y44_A 217 K-LKELARDCDVMVHE 231 (320)
T ss_dssp H-HHHHTTTCSEEEEE
T ss_pred H-HHHHhCCCCEEEEe
Confidence 0 11335789999999
No 13
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.69 E-value=4.1e-17 Score=160.76 Aligned_cols=170 Identities=18% Similarity=0.219 Sum_probs=119.8
Q ss_pred CEEEEecCCCCcC----CCceEEEEE----CCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcc
Q 012717 1 MKFTCLCQGGGFN----FPPCHILNV----SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAN 72 (458)
Q Consensus 1 mkl~~Lg~~~~~v----~~sc~LLe~----~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (458)
|++++||++++.+ +.+||+|+. ++.+||+|||.... .
T Consensus 2 m~i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~~iliD~G~~~~-----------------------------------~ 46 (306)
T 2cbn_A 2 MNLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ-----------------------------------H 46 (306)
T ss_dssp CEEEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHH-----------------------------------H
T ss_pred eEEEEEEcCCCCCCCCCCCCEEEEEeecCCCCcEEEEECCHHHH-----------------------------------H
Confidence 8999999986332 369999999 89999999998632 1
Q ss_pred ccccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccC-----CcceEEEehHHHHHHHHHHHHHHHHHHh
Q 012717 73 DLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEG-----FSAKIYITEAAARIGQLMMEELICMNME 145 (458)
Q Consensus 73 ~l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~g-----f~g~Iy~T~pT~~l~~~~L~d~~~~~~~ 145 (458)
.+. .. .+++.+||+|||||. ||++|||.|.+..+ ...+||+++.+.++.+.++... .
T Consensus 47 ~l~---~~--------~~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~----~- 110 (306)
T 2cbn_A 47 QLL---HT--------AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRIS----G- 110 (306)
T ss_dssp HHH---TS--------CCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHT----T-
T ss_pred HHH---Hh--------CCCHHHcCEEEEecCCchhhCChHHHHHHHHhcCCCCCeEEEcCccHHHHHHHHHHhh----c-
Confidence 110 00 135678999999999 99999999876321 2468999999987554333210 0
Q ss_pred hhhhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCC
Q 012717 146 YRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG 225 (458)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aG 225 (458)
.|. .+ + -+++.+..++.+++ ++++|+++++-
T Consensus 111 -------------~~~-------------------------~~-~---------~~~~~~~~g~~~~~-~~~~v~~~~~~ 141 (306)
T 2cbn_A 111 -------------SWT-------------------------DY-P---------LEIVEIGAGEILDD-GLRKVTAYPLE 141 (306)
T ss_dssp -------------CCC-------------------------SS-C---------EEEEECCSEEEEEC-SSEEEEEEECB
T ss_pred -------------cCC-------------------------Cc-e---------EEEEEcCCCcEeec-CCEEEEEEEcc
Confidence 000 00 0 13566677778887 57999999999
Q ss_pred CCCCceEEEEEe--------------------------------------------------CCeeEEEecCCCCCCCCC
Q 012717 226 LDIGACNWIISG--------------------------------------------------AKGNIAYISGSNFASGHA 255 (458)
Q Consensus 226 H~lGsa~~~I~~--------------------------------------------------~~~~i~ytgD~~~~~~~~ 255 (458)
|..++.+|+++. ++++|+|+||+.....
T Consensus 142 H~~~~~gy~i~~~~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~~sgDt~~~~~-- 219 (306)
T 2cbn_A 142 HPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA-- 219 (306)
T ss_dssp SSSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECCSCBSCST--
T ss_pred CCCCccEEEEEecCccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCCCEEEEeCCCCCHHH--
Confidence 999999999974 4678999999974321
Q ss_pred CcCCCCCCCCCcEEEEcCCCCCC
Q 012717 256 MDFDYRAIQGSDLILYSDLSSLD 278 (458)
Q Consensus 256 ~~~d~~~l~~~D~Li~e~~~st~ 278 (458)
+ ...++++|+||+| +|+
T Consensus 220 --~-~~~~~~~D~li~E---~t~ 236 (306)
T 2cbn_A 220 --A-LDLAKGVDVMVHE---ATL 236 (306)
T ss_dssp --H-HHHHTTCSEEEEE---CCB
T ss_pred --H-HHHhcCCCEEEEE---CcC
Confidence 0 1235689999999 464
No 14
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.68 E-value=2.3e-17 Score=159.21 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=116.1
Q ss_pred CEEEEecCCCCc----------------------CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCcc
Q 012717 1 MKFTCLCQGGGF----------------------NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSD 58 (458)
Q Consensus 1 mkl~~Lg~~~~~----------------------v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~ 58 (458)
|++++||.|+++ -+.+||||+.++.+||+|||...-
T Consensus 3 ~~~~~LGtg~~~g~P~~~c~C~~C~~ar~~~~~~r~~s~~li~~~~~~iLiD~G~~~~---------------------- 60 (258)
T 3g1p_A 3 LTLTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDL---------------------- 60 (258)
T ss_dssp EEEEEEECBCSSCBSCTTCCSHHHHHHHHCGGGCBCBSEEEEEETTEEEEECCCCTTH----------------------
T ss_pred eEEEEEEeCCCCCCccCCcCChhhhhhhhCccccccCceEEEEECCcEEEEECCchHH----------------------
Confidence 789999998533 247899999999999999994310
Q ss_pred chhhhcccCCCCccccccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHH
Q 012717 59 SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (458)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L 136 (458)
. .. ++..+||+|||||. ||+++++.|....+...+||+++.+..+
T Consensus 61 --~----------~~----------------~~~~~id~IliTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~----- 107 (258)
T 3g1p_A 61 --A----------DR----------------WSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGC----- 107 (258)
T ss_dssp --H----------HH----------------CCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCS-----
T ss_pred --H----------hh----------------cCcccCCEEEEccCchhHhCCHHHHhccCCCCeEEEeChhhhhH-----
Confidence 0 00 24568999999999 9999999986544445899999877521
Q ss_pred HHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCc
Q 012717 137 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI 216 (458)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~ 216 (458)
.+ +.+. . .+ .+..+.+..++.+++ ++
T Consensus 108 ~~---------------------~~~~-----------------~-----~~----------~~~~~~~~~g~~~~~-g~ 133 (258)
T 3g1p_A 108 DD---------------------LFKH-----------------P-----GL----------LDFSHTVEPFVVFDL-QG 133 (258)
T ss_dssp TT---------------------TTTS-----------------C-----TT----------EEEEEECCTTCCEEE-TT
T ss_pred HH---------------------HhcC-----------------C-----Cc----------cccccccCCCCeEEE-CC
Confidence 00 0000 0 00 011256788889999 67
Q ss_pred EEEEEecCCCCCCceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCC--CCCcEEEEcC
Q 012717 217 LIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAI--QGSDLILYSD 273 (458)
Q Consensus 217 l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l--~~~D~Li~e~ 273 (458)
++|+++++.|..|+++|+|+.++++++|+||+.... +.-...+ .++|+||+|.
T Consensus 134 ~~v~~~~~~H~~~~~g~~i~~~~~~i~~~GDt~~~~----~~~~~~l~~~~~Dlli~e~ 188 (258)
T 3g1p_A 134 LQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLP----EKTLKFLRNNQPQVMVMDC 188 (258)
T ss_dssp EEEEEEECCSSSCCEEEEEECSSCEEEEECSCSSCC----HHHHHHHHHTCCSEEEEEC
T ss_pred EEEEEEECCCCCCceEEEEEeCCcEEEEECCCCCCC----HHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999997432 1001223 5899999993
No 15
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.67 E-value=5.9e-17 Score=156.85 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=117.0
Q ss_pred CEEEEecCCCCcC----CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccc
Q 012717 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (458)
Q Consensus 1 mkl~~Lg~~~~~v----~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (458)
|++++||.+++.+ +.+||+|+.++..||+|||.... ..|..
T Consensus 25 m~i~~LG~g~~~p~~~~~~~~~li~~~~~~iLiD~G~~~~-----------------------------------~~l~~ 69 (268)
T 1zkp_A 25 MKMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVL-----------------------------------AQLQK 69 (268)
T ss_dssp EEEEEEECBSSSCCTTCCBSEEEEEETTEEEEECCCTTHH-----------------------------------HHHTT
T ss_pred cEEEEEeCCCCcCCCCCCccEEEEEECCcEEEEECCHHHH-----------------------------------HHHHH
Confidence 7999999874322 48999999999999999998631 11100
Q ss_pred ccCcccccccccccCCCcccEEEecCC--CCcchhhhhhccc---------CCcceEEEehHHHHHHHHHHHHHHHHHHh
Q 012717 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---------GFSAKIYITEAAARIGQLMMEELICMNME 145 (458)
Q Consensus 77 ~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~---------gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~ 145 (458)
. +++.+||+|||||. ||++++|.|.+.. +-..+||+++.+.+.. ++.
T Consensus 70 -~-----------~~~~~i~~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~l----~~~------ 127 (268)
T 1zkp_A 70 -Y-----------ITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGF----HSL------ 127 (268)
T ss_dssp -T-----------CCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSSHHHH----HTT------
T ss_pred -h-----------CCcccCCEEEEecCCchhhCCHHHHHHHHHhcccccCCCCceEEEeCccHHHHH----Hhc------
Confidence 0 24568999999999 9999999887531 1147999998886531 100
Q ss_pred hhhhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCC
Q 012717 146 YRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG 225 (458)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aG 225 (458)
.|. + ..++..+..++.+++ ++++|++++++
T Consensus 128 -------------~~~----------------------------~--------~~~~~~~~~g~~~~~-g~~~v~~~~~~ 157 (268)
T 1zkp_A 128 -------------THE----------------------------P--------HTKGIPYNPEETLQI-GPFSISFLKTV 157 (268)
T ss_dssp -------------CBT----------------------------T--------TEEEEECCTTSCEEE-TTEEEEEEECC
T ss_pred -------------ccC----------------------------C--------ccceEEecCCCeEEE-CCEEEEEEECC
Confidence 010 0 013566777888898 67999999999
Q ss_pred CCCCceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 226 LDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 226 H~lGsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
|..|+++|.|+.++.+++|+||+..... -...++++|++++|
T Consensus 158 H~~~~~~~~i~~~~~~i~~~GD~~~~~~-----~~~~~~~~d~li~e 199 (268)
T 1zkp_A 158 HPVTCFAMRITAGNDIVVYSADSSYIPE-----FIPFTKDADLFICE 199 (268)
T ss_dssp SSSCCEEEEEEETTEEEEECCSCCCCTT-----HHHHHTTCSEEEEE
T ss_pred CCCCceEEEEEECCeEEEEeCCCCCCHH-----HHHHHcCCCEEEEE
Confidence 9999999999999999999999864211 11224689999999
No 16
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=155.22 Aligned_cols=90 Identities=22% Similarity=0.243 Sum_probs=68.0
Q ss_pred CEEEEecCCCCcC----CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccc
Q 012717 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (458)
Q Consensus 1 mkl~~Lg~~~~~v----~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (458)
|++++||.+++.+ +.|||+|+.++.+||+|||..... .+..
T Consensus 1 M~l~~LGtg~~~p~~~r~~ss~ll~~~~~~iLiD~G~g~~~-----------------------------------~l~~ 45 (368)
T 3zwf_A 1 MDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQT-----------------------------------QLMK 45 (368)
T ss_dssp CEEEEEECBSSSCCSSSCSSEEEEEETTEEEEECCCTTHHH-----------------------------------HHHH
T ss_pred CEEEEECCCCCCCCCCCCccEEEEEECCeEEEEeCChhHHH-----------------------------------HHHH
Confidence 9999999875432 488999999999999999965321 1100
Q ss_pred ccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCC---------cceEEEehHHHHHHHHHH
Q 012717 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF---------SAKIYITEAAARIGQLMM 136 (458)
Q Consensus 77 ~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf---------~g~Iy~T~pT~~l~~~~L 136 (458)
..++..+||+|||||. ||+++||.|....++ ..+||++..+.+..+.++
T Consensus 46 -----------~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~~~~~~~l~iygp~~~~~~l~~~l 105 (368)
T 3zwf_A 46 -----------SQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTM 105 (368)
T ss_dssp -----------SSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC------CCEEEEEETTHHHHHHHHH
T ss_pred -----------cCCChHHCCEEEECCCChHHhCcHHHHHHHhhhccccccCCCCeEEEEcHHHHHHHHHHH
Confidence 0145678999999999 999999998864322 458999999988655444
No 17
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.57 E-value=3.8e-15 Score=146.49 Aligned_cols=126 Identities=14% Similarity=0.185 Sum_probs=86.6
Q ss_pred CCCcccEEEecCC--CCcchhhhhhccc---CCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhH
Q 012717 91 NVSFIDVVLISSP--MGMLGLPFLTRME---GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 165 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g~LP~L~~~~---gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (458)
+..+||+|||||. ||++|||.|.+.+ +...+||++..+.+..+..+. . .+. .|.
T Consensus 96 ~~~~id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~----~------~~~-------~~~---- 154 (293)
T 3md7_A 96 GVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFG----Y------CFE-------TPV---- 154 (293)
T ss_dssp TCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCG----G------GTS-------CCT----
T ss_pred CCCcccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhh----h------hhc-------ccc----
Confidence 4578999999999 9999999886421 446899999998774322111 0 000 000
Q ss_pred hhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCc----EEEEEecCCCC-CCceEEEEEeCCe
Q 012717 166 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI----LIIKAFSSGLD-IGACNWIISGAKG 240 (458)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~----l~i~~~~aGH~-lGsa~~~I~~~~~ 240 (458)
+. .+.+ .-+++.+..++++++ ++ ++|+++++.|. .++.+|+|+
T Consensus 155 ----------------~~---~~~~--------~~~~~~l~~g~~~~~-g~~~~~~~v~~~~~~H~~~~~~g~~i~---- 202 (293)
T 3md7_A 155 ----------------GS---SYPP--------ILSMHDIAPETPFSI-EGAGGAIRFEPFSQVHGDIESLGFRIG---- 202 (293)
T ss_dssp ----------------TC---CCCC--------CEEEEECCTTCCEEE-CCTTCCEEEEEEEEEETTEEEEEEEET----
T ss_pred ----------------cc---CCCC--------ceEEEEcCCCCcEEE-CCCCCcEEEEEEEecCCCCCEEEEEEe----
Confidence 00 0000 014677788899999 56 99999999999 799999997
Q ss_pred eEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcC
Q 012717 241 NIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (458)
Q Consensus 241 ~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~ 273 (458)
+++|+||+.... +.-...++++|+||+|.
T Consensus 203 ~~~y~gDt~~~~----~~~~~~~~~~Dlli~e~ 231 (293)
T 3md7_A 203 SVVYCTDVSAFP----EQSLQYIKDADVLIIGA 231 (293)
T ss_dssp TEEEECSCSBCC----GGGHHHHTTCSEEEEEC
T ss_pred EEEEECCCCCCC----HHHHHHhcCCCEEEEeC
Confidence 899999996321 11113457899999994
No 18
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.54 E-value=5.8e-15 Score=143.10 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=111.1
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|+++.+..+. ..+|+++ ++.+||+|||.... ..+.
T Consensus 1 m~i~~~~~g~---~~~~~~i--~~~~iLiD~G~~~~-----------------------------------~~l~----- 35 (280)
T 2e7y_A 1 MNIIGFSKAL---FSTWIYY--SPERILFDAGEGVS-----------------------------------TTLG----- 35 (280)
T ss_dssp CCEEEEEETT---TEEEEEE--GGGTEEEEECTTHH-----------------------------------HHHG-----
T ss_pred CEEEEEecCC---ceEEEEE--CCcEEEEECCcchH-----------------------------------HHhc-----
Confidence 7888887653 4667777 57899999997631 0110
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhc----ccC---CcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcC
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTR----MEG---FSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~----~~g---f~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~ 151 (458)
.+..+||+|||||. ||+++||.|.. .++ -..+||+++.+. +.+..+.....+ +
T Consensus 36 ---------~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~--------~ 97 (280)
T 2e7y_A 36 ---------SKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR-AVEEYTEFIKRA--------N 97 (280)
T ss_dssp ---------GGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH-HHHHHHHHHHHH--------C
T ss_pred ---------cCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH-HHHHHHHHHhhc--------c
Confidence 13567999999999 99999999952 122 137999999987 543332211000 0
Q ss_pred CCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCC----cEEEEEecCCCC
Q 012717 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG----ILIIKAFSSGLD 227 (458)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g----~l~i~~~~aGH~ 227 (458)
+ .. .+ + .+++.+..++.+++.+ +++|+++++||.
T Consensus 98 ~---------------~~-----------------~~-~---------~~~~~~~~g~~~~~g~~~~~~~~v~~~~~~H~ 135 (280)
T 2e7y_A 98 P---------------DL-----------------RF-S---------FNVHPLKEGERVFLRNAGGFKRYVQPFRTKHV 135 (280)
T ss_dssp G---------------GG-----------------TT-T---------EEEEEECTTCCEECCCSSCSCEEEEEEECCSC
T ss_pred c---------------CC-----------------CC-c---------eEEEEcCCCCEEEeCCcccCCEEEEEEEccCC
Confidence 0 00 00 0 1467788899999953 799999999999
Q ss_pred CC--ceEEEEEe---------------------------------CCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 228 IG--ACNWIISG---------------------------------AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 228 lG--sa~~~I~~---------------------------------~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
.| +++|+|+. ++++|+|+||+... ....++++|+||+|
T Consensus 136 ~~~~~~g~~i~~~~~~l~~~~~g~~~~~~~~l~~~~g~~~~~~~~~g~~i~ysgDt~~~-------~~~~~~~~d~li~e 208 (280)
T 2e7y_A 136 SSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLAL-------DPEEIRGTELLIHE 208 (280)
T ss_dssp SSSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTGGGEEEEEEEEEEECCSCSSC-------CHHHHTTCSCEEEE
T ss_pred CCCceEEEEEEEcccccCHhhcCCCHHHHHHHHhhcCCceecCCccCCEEEEECCCChH-------HHHhhcCCCEEEEe
Confidence 99 99999973 34689999999742 22335789999999
Q ss_pred C
Q 012717 273 D 273 (458)
Q Consensus 273 ~ 273 (458)
+
T Consensus 209 ~ 209 (280)
T 2e7y_A 209 C 209 (280)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.52 E-value=8.8e-15 Score=146.00 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=116.8
Q ss_pred CEEEEecCCCCc------------------------CCCceEEEEECCEE-EEEcCCCCCccccccCCCCCccccccccc
Q 012717 1 MKFTCLCQGGGF------------------------NFPPCHILNVSGFH-VLFDCPLDLSALTVFSPLPNDFYKAICKE 55 (458)
Q Consensus 1 mkl~~Lg~~~~~------------------------v~~sc~LLe~~~~~-ILlDCG~~~~~~~~f~~~~~~~~~~~~~~ 55 (458)
||+++||.|++. =+++|++|+.++.+ ||+|||.......
T Consensus 3 M~~~~LGtg~s~G~P~~~C~C~~C~~a~~~~~~~~~R~~ss~li~~~~~~~iLiD~G~~~~~~l---------------- 66 (321)
T 3jxp_A 3 MYIQVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIALSDDGVHWILCNASPDIRAQL---------------- 66 (321)
T ss_dssp EEEEEEECBCTTTBTTTTCCSHHHHHHHHTCSCCCCBCBCEEEEESSSSSEEEECCCTTHHHHH----------------
T ss_pred EEEEEEEeCCCCCCCcCCcCCccchhhhhCCCCCCcccceEEEEEeCCceEEEEeCCchHHHHH----------------
Confidence 789999988311 13689999999886 9999997642100
Q ss_pred CccchhhhcccCCCCccccccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHH
Q 012717 56 NSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQ 133 (458)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~ 133 (458)
. + ...+ .|. ..++..+||+|||||. ||++|||.|.+ +...+||++..|.+..+
T Consensus 67 -----~-----~---~~~l---~~~-------~~~~~~~i~~i~lTH~H~DH~~gl~~l~~--~~~~~vy~~~~~~~~l~ 121 (321)
T 3jxp_A 67 -----Q-----A---FAPM---QPA-------RALRDTGINAIVLLDSQIDHTTGLLSLRE--GCPHQVWCTDMVHQDLT 121 (321)
T ss_dssp -----H-----T---CGGG---CCC-------SSSSCCSEEEEECSCCCHHHHGGGGGGGG--GCCEEEEECHHHHHHTT
T ss_pred -----H-----h---cccc---ccc-------ccCCcccCCEEEECCCChhhhhhHHHHHh--cCCCeEEECHHHHHHHH
Confidence 0 0 0000 111 1146789999999999 99999999965 45789999999866432
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEe
Q 012717 134 LMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACY 213 (458)
Q Consensus 134 ~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i 213 (458)
..+. ...... . .+.. -.++.+..++++++
T Consensus 122 ~~~~-~f~~~~------------------------------------~-----~~~~---------i~~~~i~~g~~~~i 150 (321)
T 3jxp_A 122 TGFP-LFNMLS------------------------------------H-----WNGG---------LQWNRIELEGSFVI 150 (321)
T ss_dssp TTSC-HHHHHT------------------------------------T-----TTTC---------EEEEECCSSSCEEC
T ss_pred hhCc-cccccc------------------------------------c-----ccCc---------eeEEEcCCCCeEEe
Confidence 1000 000000 0 0000 03566777888888
Q ss_pred --CCcEEEEEecCC--------CC-----CCceEEEEE--eCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcC
Q 012717 214 --NGILIIKAFSSG--------LD-----IGACNWIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (458)
Q Consensus 214 --~g~l~i~~~~aG--------H~-----lGsa~~~I~--~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~ 273 (458)
.++++|+++++- |. ..+.+|+|+ .++++++|+||+...+ +.-...++++|+||+|+
T Consensus 151 ~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~y~~Dt~~~~----~~~~~~~~~~D~li~ea 223 (321)
T 3jxp_A 151 DACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVD----EKLLAMMHGADCLLVDG 223 (321)
T ss_dssp TTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCC----HHHHHHHHHCSEEEEEC
T ss_pred ccCCCeEEEEEEecCCccccccccccccCCCcEEEEEEecCCCcEEEEECCCCCCC----HHHHHHhcCCCEEEEeC
Confidence 246999999986 76 468899999 8899999999986321 11112356899999994
No 20
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.49 E-value=6.2e-13 Score=126.67 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=103.2
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|+++.+|. +||+|+.++.+||+|||..... +
T Consensus 30 ~~it~lg~-------s~~li~~~~~~iliDpg~~~~~------------------------------------~------ 60 (235)
T 3kl7_A 30 LTITFIKH-------GSLMLTYDNHSIQVDPVSEYAD------------------------------------Y------ 60 (235)
T ss_dssp EEEEEEET-------TEEEEEETTEEEEESCCTTTCC------------------------------------T------
T ss_pred eEEEEEcc-------eEEEEEECCEEEEECCCCCccc------------------------------------h------
Confidence 56777764 5999999999999999976320 0
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
.+..+||+|||||. ||++ ++.+.+......+||++..+.+..
T Consensus 61 ---------~~~~~id~VliTH~H~DH~~-~~~l~~~~~~~~~v~~~~~~~~~l-------------------------- 104 (235)
T 3kl7_A 61 ---------TTFPKADIILITHEHGDHLD-PKAIQAVEKSDTEIIANENSQKKL-------------------------- 104 (235)
T ss_dssp ---------TSSCCCSEEEECCSSTTTCC-HHHHHHHCCTTCEEEECHHHHHHH--------------------------
T ss_pred ---------hhCCCCCEEEECCCccccCC-HHHHHHhhcCCCEEEEcHHHHHHh--------------------------
Confidence 13457999999999 9995 555554223478999998775421
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCC-EEEeCCcEEEEEecCCCCCC--------
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE-EACYNGILIIKAFSSGLDIG-------- 229 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e-~v~i~g~l~i~~~~aGH~lG-------- 229 (458)
++...+..++ .+++ ++++|++.++-|..+
T Consensus 105 -----------------------------------------~~~~~l~~g~~~~~~-g~~~i~~~p~~H~~~~~~~~~~~ 142 (235)
T 3kl7_A 105 -----------------------------------------GKGKVLKNGDTDTSI-SYMKIEAVPAYNTTPGRDKYHPR 142 (235)
T ss_dssp -----------------------------------------TCSEECCTTCEECCS-TTCEEEEEECCCCSTTGGGTSCT
T ss_pred -----------------------------------------cCcEEecCCCEEEEE-CCEEEEEEEeecCCCccccccCC
Confidence 1234566677 7777 579999999988753
Q ss_pred --ceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 230 --ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 230 --sa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
+++|+|+.++.+++|+||+.... +...+.++|+++++
T Consensus 143 ~~~~g~~i~~~g~~i~~~GDt~~~~------~~~~l~~~Dv~il~ 181 (235)
T 3kl7_A 143 HRDNGYILTFDGLRVYIAGDTEDIP------EMKDLKDIDIAFLP 181 (235)
T ss_dssp TTSEEEEEEETTEEEEECCSCCSCG------GGGGCCSCSEEEEE
T ss_pred CCceEEEEEeCCeEEEEECCCCchh------hHHhhcCCCEEEEC
Confidence 58999999999999999987532 22335689999998
No 21
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.39 E-value=5e-12 Score=122.29 Aligned_cols=110 Identities=10% Similarity=0.077 Sum_probs=76.9
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
+++.+||+|++||. ||+|+++.+ .+.+||+++.+.+........ . ... ..+
T Consensus 99 ~~~~~i~~VilTH~H~DH~gg~~~~-----~~~~v~~~~~~~~~~~~~~~~----~---------~~~--~~~------- 151 (276)
T 2r2d_A 99 LSPDDISTVVLSHLHNDHAGCVEYF-----GKSRLIAHEDEFATAVRYFAT----G---------DHS--SPY------- 151 (276)
T ss_dssp CCGGGCSEEECSCCSTTTSTTGGGC-----SSSEEEEEHHHHHHHHHHHHT----T---------CCS--SSS-------
T ss_pred CCHHHCCEEEecCcccccCCChhhC-----CCCEEEECHHHHHHHhccccc----c---------ccc--ccc-------
Confidence 46779999999999 999999987 257999999887643211100 0 000 000
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHH---HhcceeeC-CCCEEEeCCcEEEEEe-cCCCCCCceEEEEEeCC-ee
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDC---ISKVQTLR-FGEEACYNGILIIKAF-SSGLDIGACNWIISGAK-GN 241 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~---~~~i~~v~-y~e~v~i~g~l~i~~~-~aGH~lGsa~~~I~~~~-~~ 241 (458)
. ..++... -.+++.+. +++.+++.+++++.+. + ||..|++++.++.++ ++
T Consensus 152 ---------------------~--~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~v~~~~p-gHt~g~~~~~~~~~~~~~ 207 (276)
T 2r2d_A 152 ---------------------I--VKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGT-GHASGMLGLAVRLEKQPG 207 (276)
T ss_dssp ---------------------C--HHHHHHHTTSCCCEEEECTTCCEEEEETTEEEEEEES-SSSSSEEEEEEECSSSCE
T ss_pred ---------------------c--hHHhhhhccccccceeccCCCceeEecCCEEEEeCCC-CCCceeEEEEEEcCCCce
Confidence 0 1122211 12456676 6888999657999999 6 999999999999877 89
Q ss_pred EEEecCCCC
Q 012717 242 IAYISGSNF 250 (458)
Q Consensus 242 i~ytgD~~~ 250 (458)
++|+||...
T Consensus 208 vl~~GD~~~ 216 (276)
T 2r2d_A 208 FLLVSDACY 216 (276)
T ss_dssp EEEEETTSC
T ss_pred EEEEechhh
Confidence 999999864
No 22
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.29 E-value=9e-12 Score=121.48 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=97.2
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
+.+||||+.++..||+|||..... ..+. +.... ..+++.
T Consensus 54 ~~n~~li~~~~~~iLID~G~~~~~----------------------------------~~~~---~~l~~----~g~~~~ 92 (294)
T 3m8t_A 54 GIAVYVIKTSQGLILMDTAMPQST----------------------------------GMIK---DNIAK----LGFKVA 92 (294)
T ss_dssp SSCCEEEEETTEEEEECCCCGGGH----------------------------------HHHH---HHHHH----TTCCGG
T ss_pred CeEEEEEEECCceEEEECCCchhH----------------------------------HHHH---HHHHH----cCCCHH
Confidence 588999999999999999985220 0010 01000 113556
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+||+|++||. ||+|+++.|.++ ++.+||+++.+.++... .. .++... .. ..
T Consensus 93 ~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~~~~----~~--------~~~~~~--------~~---~~-- 145 (294)
T 3m8t_A 93 DIKLILNTHAHLDHTGGFAEIKKE--TGAQLVAGERDKPLLEG----GY--------YPGDEK--------NE---DL-- 145 (294)
T ss_dssp GEEEEECSCCCHHHHTTHHHHHHH--HCCEEEEEGGGHHHHHH----TC--------BTTBTT--------CG---GG--
T ss_pred HCcEEEECCCCccccccHHHHhhc--cCCEEEEChHHHHHHhc----cc--------ccCccc--------cc---cC--
Confidence 8999999999 999999999875 46899999998774321 00 001000 00 00
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEEEeCCe----eEEEec
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKG----NIAYIS 246 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I~~~~~----~i~ytg 246 (458)
.+.+ ....+.+..++.+++ |+++++++. .||..|++++.++.++. +++|+|
T Consensus 146 ---------------~~~~--------~~~~~~~~~g~~~~~-g~~~i~~~~~pgHt~g~~~~~~~~~~~~~~~~~lf~G 201 (294)
T 3m8t_A 146 ---------------AFPA--------VKVDRAVKEGDRVTL-GDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFC 201 (294)
T ss_dssp ---------------CCCC--------CCCSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECC
T ss_pred ---------------CCCC--------CCCceEeCCCCEEEe-CCEEEEEEeCCCCCccCEEEEEEccCCCccceEEEEc
Confidence 0001 012467788999999 578888776 68999999999987655 899999
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 202 D~~ 204 (294)
T 3m8t_A 202 SGT 204 (294)
T ss_dssp CCC
T ss_pred Ccc
Confidence 985
No 23
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.27 E-value=5.9e-12 Score=122.49 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=95.8
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
.+.+||||+.++..||+|||....... ....+. ........+. +.... ..+++
T Consensus 46 ~~~n~~lI~~~~~~iLID~G~~~~~~~------------------~~~~~~--~~~~~~~~l~---~~l~~----~g~~~ 98 (280)
T 3esh_A 46 LPTHPILIQTAQYNLIIDAGIGNGKLS------------------EKQLRN--FGVDEESHII---ADLAN----YNLTP 98 (280)
T ss_dssp EECCCEEEECSSCEEESCCTTCSSCSC------------------HHHHHH--TTCSSCCCHH---HHHHT----TTCCT
T ss_pred EeEEEEEEEECCEEEEEECCCCCcccc------------------cccccc--cCCcccchHH---HHHHH----cCCCH
Confidence 456899999999999999998753100 000000 0000001110 11110 12567
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCC-cceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC-ccchhhhHhhh
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGF-SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG-PQWMKWEELEL 168 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf-~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 168 (458)
.+||+|++||. ||+|+++.|.+...| +.+||+++.+.++.. + +..... ..|.
T Consensus 99 ~~Id~IllTH~H~DHigg~~~l~~~~~fp~a~i~~~~~~~~~~~----~-------------~~~~~~~~~~~------- 154 (280)
T 3esh_A 99 KDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFI----A-------------PNIRSKSTYWD------- 154 (280)
T ss_dssp TSCCEEECSCCCHHHHGGGSCTTSCCSSTTCEEEEEHHHHHHHH----S-------------CCTTGGGTSCG-------
T ss_pred HHCCEEEeCCCcccccCcccccccccCCCCCEEEECHHHHHHhh----C-------------cccccccchhh-------
Confidence 79999999999 999999999863245 799999998866321 1 000000 0000
Q ss_pred chhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCC
Q 012717 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGS 248 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~ 248 (458)
..|.++ ..+++.+ .+..++.+++++. ...||..|++++.++.++++++|+||.
T Consensus 155 -----------------~~~~~~-------~~~~~~~--~~~~~l~~gi~~~-~~pGHt~g~~~~~i~~~~~~vlftGD~ 207 (280)
T 3esh_A 155 -----------------KNKGDY-------SNKLILF--EKHFEPVPGIKMQ-HSGGHSFGHTIITIESQGDKAVHMGDI 207 (280)
T ss_dssp -----------------GGCCGG-------GGGEEEE--SSEECSSTTEEEE-ECCSSSTTCEEEEEEETTEEEEECGGG
T ss_pred -----------------hhhhhh-------hheEEEe--CCCCeEcCCEEEE-EcCCCCcccEEEEEEECCcEEEEEEcc
Confidence 001111 1233433 3445555568874 457999999999999999999999998
Q ss_pred CC
Q 012717 249 NF 250 (458)
Q Consensus 249 ~~ 250 (458)
..
T Consensus 208 ~~ 209 (280)
T 3esh_A 208 FP 209 (280)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 24
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=99.26 E-value=4.8e-12 Score=119.01 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=97.6
Q ss_pred CEEEEecCCCCc--------CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcc
Q 012717 1 MKFTCLCQGGGF--------NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAN 72 (458)
Q Consensus 1 mkl~~Lg~~~~~--------v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (458)
|.++|+|.++.. ...+||||+.++..||+|||..... . .+ .+
T Consensus 13 ~~~~~~~~~g~~~~p~~~~~~~~n~~li~~~~~~iLID~G~~~~~-----------------------~------~l-~~ 62 (221)
T 1ztc_A 13 MELKILVTGGNVFVPGRLNAHFSTVVYLEHKDRRIIIDPGNLSSM-----------------------D------EL-EE 62 (221)
T ss_dssp EEEEEEECCBEEEETTTEECCBCCEEEEEETTEEEEECCCCGGGH-----------------------H------HH-HH
T ss_pred eeEEEEEecceEEecCCCCCCceEEEEEEeCCeEEEEECCCCcch-----------------------H------HH-HH
Confidence 678888776211 2368999999999999999985210 0 00 01
Q ss_pred ccccccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhc
Q 012717 73 DLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFY 150 (458)
Q Consensus 73 ~l~~~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~ 150 (458)
.|. . ..+++.+||+|++||. ||+|+++.+. +.+||+++.. +.+.+ +
T Consensus 63 ~l~----~-------~g~~~~~i~~ViiTH~H~DH~gg~~~~~-----~~~v~~~~~~-------~~~~~---~------ 110 (221)
T 1ztc_A 63 KFS----E-------LGISPDDITDVLFTHVHLDHIFNSVLFE-----NATFYVHEVY-------KTKNY---L------ 110 (221)
T ss_dssp HHH----H-------HTCCGGGCCEEECSCCCHHHHGGGGGCT-----TCEEEEEGGG-------GGSCG---G------
T ss_pred HHH----H-------cCCCHHHCcEEEEcCCccccCCchhhCC-----CCEEEEeHHH-------hhhhh---h------
Confidence 110 0 1145678999999999 9999999874 4799999871 11100 0
Q ss_pred CCCCCCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCc
Q 012717 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGA 230 (458)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGs 230 (458)
.|... .. .+...+.....+++.++.++.+.. +++++...+ ||..|+
T Consensus 111 --------~~~~~--~~----------------------~~~~~~~~~~~~~~~~~~g~~l~~-~~~~v~~~p-GHt~g~ 156 (221)
T 1ztc_A 111 --------SFGTI--VG----------------------RIYSKVISSWKNVVLLKGEESLFD-EKVKVFHTP-WHAREH 156 (221)
T ss_dssp --------GGCHH--HH----------------------HHHHHHHHTCCSEEEECSCCEETT-TTEEEEECC-SSSTTC
T ss_pred --------hhccc--hh----------------------hhhhhccccccceEEeCCCCEEEC-CeEEEEEcC-CCCccc
Confidence 00000 00 000111111124567777776642 378998887 999999
Q ss_pred eEEEEEeCC-eeEEEecCCC
Q 012717 231 CNWIISGAK-GNIAYISGSN 249 (458)
Q Consensus 231 a~~~I~~~~-~~i~ytgD~~ 249 (458)
+++.++.++ .+++|+||..
T Consensus 157 ~~~~~~~~~~~~vlftGD~~ 176 (221)
T 1ztc_A 157 LSFLLDTENAGRVLITGDIT 176 (221)
T ss_dssp EEEEEEETTTEEEEECGGGS
T ss_pred EEEEEEcCCCCeEEEEeCcc
Confidence 999999876 7999999985
No 25
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.24 E-value=1e-10 Score=112.93 Aligned_cols=166 Identities=12% Similarity=0.109 Sum_probs=105.0
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCcccc-ccCCCCCcccccccccCccchhhhcccCCCCccccccccC
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALT-VFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 79 (458)
|++|.+|. +|++|+.++.+||+|+++...... .|. +.+....+ ..+. ..|
T Consensus 5 m~it~lGh-------a~~li~~~g~~iLiDp~~s~~~~~~~~~-----------------~~~~~~~~----~~~~-~~~ 55 (264)
T 3rpc_A 5 TQYTHIRN-------ATGKLTIKNTTFLIDPFLAPKDTYPGFE-----------------GTFNYQQR----MPMV-DLP 55 (264)
T ss_dssp CEEEEEET-------TEEEEEETTEEEEESCCCCCTTCBCCCT-----------------TBTTTTSC----BSSS-CCS
T ss_pred EEEEEEeC-------cEEEEEECCEEEEeCcccCCCcCccCCC-----------------Cccccccc----CCCC-CCC
Confidence 78898885 599999999999999988753110 010 00000000 0000 001
Q ss_pred cccccccccccC-CCcccEEEecCC--CCcchhhhhhcccCCcceEEEe-hHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 012717 80 WYKTVNNLHLWN-VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYIT-EAAARIGQLMMEELICMNMEYRQFYGAEES 155 (458)
Q Consensus 80 ~~~~~~~~~~~d-~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T-~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~ 155 (458)
. .+ -+ +.+||+|||||. ||+++++.+..+ .+.|||++ ..+.+.. .. .|
T Consensus 56 ~--~~-----~~l~~~id~iliTH~H~DH~~~~~~~~~~--~~~~v~~~~~~~~~~l----~~-----------~g---- 107 (264)
T 3rpc_A 56 L--SM-----DDLLSNVTAVVVTHTHLDHWDDTAINSIP--KSLPIFVQNTADKELI----TS-----------QG---- 107 (264)
T ss_dssp S--CH-----HHHHTTCCEEECSCCCGGGSCHHHHHHSC--TTSCEEESSHHHHHHH----HH-----------TT----
T ss_pred C--CH-----HHccccCCEEEECCCchhhCCCHHHHhhc--cCCeEEEeCHHHHHHH----Hh-----------cC----
Confidence 1 00 01 237999999999 999999988763 47899999 6554421 10 00
Q ss_pred CCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCC------
Q 012717 156 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG------ 229 (458)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lG------ 229 (458)
+.+++.+ ++++++ ++++|++.++-|..+
T Consensus 108 -------------------------------------------~~~~~~~--~~~~~~-~~~~i~~~pa~H~~~~~~~~p 141 (264)
T 3rpc_A 108 -------------------------------------------FIDVRII--FESLEF-NGITLRKTGGSHGTVEMYANP 141 (264)
T ss_dssp -------------------------------------------CSCEEEC--SSEEEE-TTEEEEEECCCSSCHHHHTST
T ss_pred -------------------------------------------CCeeEEe--cccEEE-CCEEEEEeccccCCccccccc
Confidence 0123333 578898 579999999999975
Q ss_pred --------ceEEEEEeC-CeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 230 --------ACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 230 --------sa~~~I~~~-~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
+++|+|+.+ +.+|+|+||+....... ......++|+++++
T Consensus 142 ~~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~~~~---~~~~~~~~Dv~il~ 190 (264)
T 3rpc_A 142 VLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVE---KALLRFDPNVIIMN 190 (264)
T ss_dssp THHHHHCCCCEEEEECTTSCCEEECCSCCSCHHHH---HHHHHHCCSEEEEE
T ss_pred cccccccccEEEEEEeCCccEEEEECCcCchHHHH---HHHHHhCCCEEEEe
Confidence 489999987 78999999987432100 00000258999998
No 26
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.24 E-value=8.8e-11 Score=118.68 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=80.0
Q ss_pred CCCcccEEEecCC--CCcc--hhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHh
Q 012717 91 NVSFIDVVLISSP--MGML--GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g--~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (458)
++.+||+|||||. ||+| ++..+.++++-..+||++..+.+.. ... +
T Consensus 106 ~l~~id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l----~~~-----------g--------------- 155 (360)
T 2wyl_A 106 AIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLW----IGW-----------G--------------- 155 (360)
T ss_dssp GCCCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHH----HHH-----------T---------------
T ss_pred HcCCCCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHH----HHc-----------C---------------
Confidence 3578999999999 9997 4666665422268999998776531 110 0
Q ss_pred hhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCC------------C------
Q 012717 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD------------I------ 228 (458)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~------------l------ 228 (458)
++ ..+++.+..++.+++ ++++|+++++-|. .
T Consensus 156 --~~----------------------------~~~~~~l~~g~~~~~-g~~~v~~~~~~H~~~~~~~~~~~h~~g~~~~~ 204 (360)
T 2wyl_A 156 --VP----------------------------KERCIVVKPGDVVKV-KDIEIHALDAFDRTALITLPADQKAAGVLPDG 204 (360)
T ss_dssp --CC----------------------------GGGEEECCTTCEEEE-TTEEEEEEECCCC------------------C
T ss_pred --CC----------------------------hheEEEcCCCCEEEE-CCEEEEEEeccCcccccccccccccccccccc
Confidence 00 014678888999999 5799999998553 2
Q ss_pred ---CceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 229 ---GACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 229 ---Gsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
++++|+|+.++.+|+|+||+....... ......++|++++.
T Consensus 205 ~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~---~i~~~~~~Dv~il~ 248 (360)
T 2wyl_A 205 MDDRAVNYLFKTPGGSLYHSGDSHYSNYYA---KHGNEHQIDVALGS 248 (360)
T ss_dssp CTTTBEEEEEEETTEEEEECTTCCCCTTHH---HHHHHSCCCEEEEE
T ss_pred cCcccEEEEEEECCcEEEEeCCCCcCHHHH---HHhhCCCCCEEEec
Confidence 378999999999999999986432100 00000157998885
No 27
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.23 E-value=7.8e-12 Score=119.53 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=67.0
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
+++.+||+|++||. ||+|+++.+. +.+||+++.+.+.... .. .| ... .
T Consensus 96 ~~~~~I~~VilTH~H~DH~gg~~~~~-----~~~i~~~~~~~~~~~~--------~~----~~----------~~~--~- 145 (254)
T 3dha_A 96 YEPDDLLYIISSHLHFDHAGGNGAFT-----NTPIIVQRTEYEAALH--------RE----EY----------MKE--C- 145 (254)
T ss_dssp CCGGGCSEEECSCCSHHHHTTGGGCS-----SSCEEEEHHHHHHHHH--------CT----TS----------CGG--G-
T ss_pred CCHHHCCEEEcCCChhhcCCChHHCC-----CCEEEECHHHHHHhhc--------cc----cc----------ccc--c-
Confidence 46678999999999 9999999874 4799999988774321 00 00 000 0
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeC-CeeEEEec
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYIS 246 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~-~~~i~ytg 246 (458)
..+ . ..+..+. ++...+ +++++...+ ||..|++++.++.+ +.+++|+|
T Consensus 146 ~~~----------------~------------~~~~~~~-~~~~~~-~~i~~~~~p-GHt~g~~~~~~~~~~~~~vl~~G 194 (254)
T 3dha_A 146 ILP----------------H------------LNYKIIE-GDYEVV-PGVQLLYTP-GHSPGHQSLFIETEQSGSVLLTI 194 (254)
T ss_dssp SCT----------------T------------SCEEEEC-SSEEEE-TTEEEEECC-SSSTTCEEEEEEETTTEEEEEEE
T ss_pred cCc----------------c------------cceEEec-CCcccc-CCEEEEECC-CCCCCCEEEEEEeCCCCEEEEEe
Confidence 000 0 0122222 444444 568887666 99999999999976 67999999
Q ss_pred CCCC
Q 012717 247 GSNF 250 (458)
Q Consensus 247 D~~~ 250 (458)
|...
T Consensus 195 D~~~ 198 (254)
T 3dha_A 195 DASY 198 (254)
T ss_dssp TTCS
T ss_pred cccc
Confidence 9864
No 28
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.22 E-value=2.2e-11 Score=117.23 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=95.0
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
+.+||||+.++..||+|||..... ..+.. .... ..+++.
T Consensus 24 ~~n~~li~~~~~~iLID~G~~~~~----------------------------------~~l~~---~l~~----~g~~~~ 62 (263)
T 1k07_A 24 DLASYLIVTPRGNILINSDLEANV----------------------------------PMIKA---SIKK----LGFKFS 62 (263)
T ss_dssp SBCCEEEEETTEEEEECCCCGGGH----------------------------------HHHHH---HHHH----TTCCGG
T ss_pred CeEEEEEEeCCceEEEECCCcccH----------------------------------HHHHH---HHHH----cCCCHH
Confidence 578999999999999999986210 00100 0000 113566
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+|++|++||. ||+|+++.+.+. +..+||+++.+.+..... . ... ..|... +.
T Consensus 63 ~i~~IilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~~~~~----~------------~~~--~~~~~~--~~---- 116 (263)
T 1k07_A 63 DTKILLISHAHFDHAAGSELIKQQ--TKAKYMVMDEDVSVILSG----G------------KSD--FHYAND--SS---- 116 (263)
T ss_dssp GEEEEECSSSSHHHHTTHHHHHHH--HCCEEEEEHHHHHHHHTT----T------------TTC--TTTTTC--GG----
T ss_pred HCcEEEeCCCCccccccHHHHHHh--cCCEEEEcHHHHHHHhcc----c------------ccc--cccCcc--cc----
Confidence 8999999999 999999999875 368999999987743210 0 000 000000 00
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEEEeC--C--eeEEEec
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGA--K--GNIAYIS 246 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I~~~--~--~~i~ytg 246 (458)
..+.+ ......+.-++.+.+ |++++++.. .||..|++++.++.. + .+++|+|
T Consensus 117 --------------~~~~~--------~~~~~~~~~g~~~~~-g~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~~lf~G 173 (263)
T 1k07_A 117 --------------TYFTQ--------STVDKVLHDGERVEL-GGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIG 173 (263)
T ss_dssp --------------GCCCC--------CCCSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEEC
T ss_pred --------------ccCCC--------CCcceEeCCCCEEEE-CCeEEEEEECCCCCCCcEEEEEecccCCceeEEEEEC
Confidence 00000 013467788889999 567777754 489999999999874 4 3899999
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 174 D~~ 176 (263)
T 1k07_A 174 SIG 176 (263)
T ss_dssp CCC
T ss_pred Ccc
Confidence 975
No 29
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.21 E-value=2.3e-11 Score=113.50 Aligned_cols=128 Identities=16% Similarity=0.060 Sum_probs=91.7
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
..++||+|+.++..||+|||..... ...+. ..... ...
T Consensus 29 ~~~n~~li~~~~~~iLiD~G~~~~~---------------------------------~~~~~---~~l~~------~~~ 66 (219)
T 3l6n_A 29 YSANSMYLVTKKGVVLFDVPWEKVQ---------------------------------YQSLM---DTIKK------RHN 66 (219)
T ss_dssp EEEEEEEEEETTEEEEESCCSSGGG---------------------------------HHHHH---HHHHH------HHS
T ss_pred ccceEEEEEeCCEEEEEeCCCChHH---------------------------------HHHHH---HHHHH------hcC
Confidence 3579999999999999999976421 00110 01000 113
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (458)
.+||+|++||. ||+|+++.|.+ ++.+||+++.+.+..+ + . + .
T Consensus 67 ~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~~----~------~-----~-----------------~- 110 (219)
T 3l6n_A 67 LPVVAVFATHSHDDRAGDLSFFNN---KGIKTYATAKTNEFLK----K------D-----G-----------------K- 110 (219)
T ss_dssp CCEEEEECSSSSTTTTCCTHHHHH---TTCEEEECHHHHHHHH----H------T-----T-----------------C-
T ss_pred CceeEEEecCCCcccccCHHHHHh---CCCEEEEcHHHHHHHH----h------c-----C-----------------C-
Confidence 57999999999 99999999975 3789999998865321 0 0 0 0
Q ss_pred hhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec--CCCCCCceEEEEEeCCeeEEEecCC
Q 012717 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYISGS 248 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~--aGH~lGsa~~~I~~~~~~i~ytgD~ 248 (458)
+ .....+..++.+.+ +++++++.. .||..|++++.+. +.+++|+||.
T Consensus 111 -------------------~---------~~~~~~~~g~~~~~-g~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf~GD~ 159 (219)
T 3l6n_A 111 -------------------A---------TSTEIIKTGKPYRI-GGEEFVVDFLGEGHTADNVVVWFP--KYNVLDGGCL 159 (219)
T ss_dssp -------------------C---------CCSEECCTTSEEEE-TTEEEEEECCCCSSSSSCCEEEET--TTTEEEEETT
T ss_pred -------------------C---------CCcEecCCCCEEEE-CCEEEEEEeCCCCCCCCCEEEEEC--CCCEEEECCe
Confidence 0 12456778888998 578888875 7999999999885 5689999997
Q ss_pred C
Q 012717 249 N 249 (458)
Q Consensus 249 ~ 249 (458)
.
T Consensus 160 ~ 160 (219)
T 3l6n_A 160 V 160 (219)
T ss_dssp S
T ss_pred e
Confidence 5
No 30
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.19 E-value=2.7e-11 Score=112.40 Aligned_cols=148 Identities=10% Similarity=0.114 Sum_probs=96.7
Q ss_pred CEEEEecCCCCcCCCceEEEEE--CCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccccc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNV--SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~--~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (458)
|+++++-.+ ..+.+||||+. ++..||+|||.....+. +.+
T Consensus 1 m~i~~~~~~--~~~~n~~li~~~~~~~~iLiD~G~~~~~l~--------------------------------~~l---- 42 (210)
T 2xf4_A 1 MNYRIIPVT--AFSQNCSLIWCEQTRLAALVDPGGDAEKIK--------------------------------QEV---- 42 (210)
T ss_dssp CEEEEEEET--TTTEEEEEEECTTTCEEEEECCCSCHHHHH--------------------------------HHH----
T ss_pred CeEEEEeeC--CcccEEEEEEecCCCcEEEEcCCCCHHHHH--------------------------------HHH----
Confidence 777777664 35789999994 68899999995421100 011
Q ss_pred CcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012717 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (458)
Q Consensus 79 p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (458)
+. .. .+|++|++||. ||+|+++.+.+.+ ..+||+++.+.+.....+.... +.++..
T Consensus 43 ---~~------~g-~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~--- 100 (210)
T 2xf4_A 43 ---DA------SG-VTLMQILLTHGHLDHVGAASELAQHY--GVPVIGPEKEDEFWLQGLPAQS-------RMFGLD--- 100 (210)
T ss_dssp ---HH------HT-CEEEEEECSCSCHHHHTTHHHHHHHH--TCCEECCCGGGHHHHHTHHHHH-------HHTTCC---
T ss_pred ---HH------cC-CceeEEEECCCChhhhcCHHHHHHHc--CCcEEEecchHHHHhccchhhh-------hhcCCc---
Confidence 00 11 24899999999 9999999998754 5899999988764322111110 001100
Q ss_pred CccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEE
Q 012717 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWII 235 (458)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I 235 (458)
. ..+ ....+.+..++.+.+ +++++++.. .||..|++++.+
T Consensus 101 -------------------------~-----~~~--------~~~~~~~~~g~~~~~-g~~~i~~~~~pgHt~g~~~~~~ 141 (210)
T 2xf4_A 101 -------------------------E-----CQP--------LTPDRWLNDGDRVSV-GNVTLQVLHCPGHTPGHVVFFD 141 (210)
T ss_dssp -------------------------C-----CCC--------CCCSBCCCTTCEEEE-TTEEEEEEECCSSSTTCEEEEE
T ss_pred -------------------------c-----cCC--------CCCceEECCCCEEEE-CCeEEEEEECCCCCCCcEEEEe
Confidence 0 000 012345677888888 567787764 489999999987
Q ss_pred EeCCeeEEEecCCC
Q 012717 236 SGAKGNIAYISGSN 249 (458)
Q Consensus 236 ~~~~~~i~ytgD~~ 249 (458)
+ +.+++|+||..
T Consensus 142 ~--~~~~lf~GD~~ 153 (210)
T 2xf4_A 142 E--QSQLLISGDVI 153 (210)
T ss_dssp T--TTTEEEEETSE
T ss_pred C--CCCEEEECCEe
Confidence 4 67999999985
No 31
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=99.18 E-value=6.7e-11 Score=109.71 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=94.9
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|+++++..+ ..+.+||||+.++..||+|||.....+. +.+.
T Consensus 1 M~i~~~~~g--~~~~n~~li~~~~~~iliD~G~~~~~l~--------------------------------~~l~----- 41 (207)
T 2zwr_A 1 MRVFPVTLG--PLQENAYLVETGEGPVLIDPGDEPEKLL--------------------------------ALFQ----- 41 (207)
T ss_dssp CEEEEEEET--TTTEEEEEEEETTEEEEECCCSCHHHHH--------------------------------HHHH-----
T ss_pred CeEEEEecC--CcccEEEEEEeCCcEEEEeCCCCHHHHH--------------------------------HHHH-----
Confidence 889998875 3578999999999999999996421100 1110
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
. .. .+|++|++||. ||+|+++.+.+.+ +.+||+++.+.+..+...... . .++..
T Consensus 42 --~------~g-~~i~~vilTH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~----~----~~g~~----- 97 (207)
T 2zwr_A 42 --T------TG-LIPLAILLTHAHFDHVGAVAPLVEAL--DLPVYLHPLDLPLYEGADLAA----R----AWGLA----- 97 (207)
T ss_dssp --H------HT-CCCSCEECSCCCGGGTTTHHHHHHHH--CCCEEECGGGHHHHHTHHHHH----H----HTTCC-----
T ss_pred --H------cC-CcccEEEECCCChHHHccHHHHHHHh--CCcEEECHHHHHHHhCchhhh----h----hcCCC-----
Confidence 0 11 24999999999 9999999998753 689999999987543211110 0 01100
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeC
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~ 238 (458)
...+. ...+.+.-++.+. .+++... .||..|++++.++
T Consensus 98 --------------------------~~~~~----------~~~~~~~~g~~i~---~~~~~~~-pGHt~g~~~~~~~-- 135 (207)
T 2zwr_A 98 --------------------------IPKPP----------LPVRPLEEGMRLF---GFQVLHL-PGHSPGHVAFYDP-- 135 (207)
T ss_dssp --------------------------CCCCC----------SCCEECCTTCEET---TEEEEEC-CSSSTTCEEEEET--
T ss_pred --------------------------CCcCC----------CCceEeCCCCEEE---EEEEEeC-CCCCCCcEEEEEC--
Confidence 00000 0123455555544 5777654 5899999999885
Q ss_pred CeeEEEecCCC
Q 012717 239 KGNIAYISGSN 249 (458)
Q Consensus 239 ~~~i~ytgD~~ 249 (458)
+++++|+||..
T Consensus 136 ~~~~lf~GD~~ 146 (207)
T 2zwr_A 136 EGAQVFSGDLL 146 (207)
T ss_dssp TTTEEEEETSE
T ss_pred CCCEEEEeccc
Confidence 67999999985
No 32
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.16 E-value=3.7e-10 Score=114.96 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=80.9
Q ss_pred CCCcccEEEecCC--CCcc--hhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHh
Q 012717 91 NVSFIDVVLISSP--MGML--GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g--~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (458)
++.+||+|||||. ||+| ++..+.++.+-..+||++..+.+.. ... +
T Consensus 130 ~~~~iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l----~~~-----------g--------------- 179 (379)
T 3bv6_A 130 AIKEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLW----LGW-----------G--------------- 179 (379)
T ss_dssp GCCCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHH----HHH-----------T---------------
T ss_pred HCCCCCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHH----HHc-----------C---------------
Confidence 3678999999999 9998 5666665432268999998775532 110 0
Q ss_pred hhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCC-------------C-----
Q 012717 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-------------I----- 228 (458)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~-------------l----- 228 (458)
++ ..+++.+..++.+++ ++++|+++++.|. .
T Consensus 180 --~~----------------------------~~~~~~l~~g~~~~~-g~~~v~~~~~~H~~~~~~~p~~h~~~~G~~~~ 228 (379)
T 3bv6_A 180 --VP----------------------------QERCIVAKVGDVLEI-GDVKIRVLDSFDRTALVTLPKGVSSYDKAILD 228 (379)
T ss_dssp --CC----------------------------GGGEEECCTTCEEEE-TTEEEEEEECCCHHHHTCCCTTSCSSCGGGGG
T ss_pred --CC----------------------------hhhEEEeCCCCEEEE-CCEEEEEEeccccccccccccccccccccccc
Confidence 00 014678888999999 5799999998663 2
Q ss_pred ----CceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 229 ----GACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 229 ----Gsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
++++|+|+.++.+|+|+||+....... ......++|++++.
T Consensus 229 ~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~---~i~~~~~~Dv~il~ 273 (379)
T 3bv6_A 229 GMDERAVNYLIETSGGSVYHSGDSHYSNYYA---KHGNDYQIDVALLS 273 (379)
T ss_dssp CHHHHBEEEEEEETTEEEEECTTCCCCTTHH---HHHHHSCCSEEEEE
T ss_pred ccCCceEEEEEEeCCeEEEEeCCCCccHHHH---HHhhcCCCCEEEec
Confidence 378999999999999999986432100 00000157999885
No 33
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.15 E-value=5.5e-10 Score=106.81 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=96.7
Q ss_pred EEEEecCC-CC-cCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccC
Q 012717 2 KFTCLCQG-GG-FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (458)
Q Consensus 2 kl~~Lg~~-~~-~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 79 (458)
.++++..+ .+ ....+|||++.++..||+|||..... ..+
T Consensus 5 ~i~~i~~~~~g~~~~~~~~li~~~~~~iLiD~G~~~~~----------------------------------~~l----- 45 (261)
T 3adr_A 5 GLHSIPAGPVEFPEIATVYVMCGEKLTVMIDAGVSNSI----------------------------------ADF----- 45 (261)
T ss_dssp EEEEEECSCTTCGGGSEEEEEECSSCEEEECCCCTTCC----------------------------------CCC-----
T ss_pred CeEEEeccCCCCCCceEEEEEEcCCcEEEEeCCCCCCh----------------------------------hhc-----
Confidence 45555544 11 23567999987688999999987420 011
Q ss_pred cccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012717 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG 157 (458)
Q Consensus 80 ~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~ 157 (458)
.+ ..+||+|++||. ||+|+++.+.+.+ +.+||+++.+.+....-- ....+.+...+.++
T Consensus 46 ---------~~-~~~i~~vi~TH~H~DH~gg~~~l~~~~--~~~i~~~~~~~~~l~~~~-~~~~~~~~~~~~~~------ 106 (261)
T 3adr_A 46 ---------SF-LDKLDYIVLTHLHIDHIGLLPELLQVY--KAKVLVKSGFKKYLTSED-GLKKLNESAEKVLG------ 106 (261)
T ss_dssp ---------TT-CSCCCEEECSCCSGGGTTTHHHHHHHS--CCEEEEETTCTHHHHSHH-HHHHHHHHHHHHHT------
T ss_pred ---------CC-CCCCcEEEECCCCccccCCHHHHHHHh--CCeEEECHHHHHHhcCch-hHHHHHHHHHHHHH------
Confidence 03 568999999999 9999999998753 789999998876432100 00000000000000
Q ss_pred ccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEEE
Q 012717 158 PQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIIS 236 (458)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I~ 236 (458)
. + ...+ +... .++. ..++..+.-++.+++ ++++++++. .||..|+.++.+
T Consensus 107 ----~---~---~~~~--------~~~~---~~~~------~~~~~~~~~g~~~~~-g~~~i~~~~~pGHt~~~~~~~~- 157 (261)
T 3adr_A 107 ----D---L---YYVY--------GGLE---KKLD------QDKVIEVEGNEEFDL-GGYRMRLIYTPGHARHHMSVLV- 157 (261)
T ss_dssp ----H---H---HHHH--------CCCC---SCCC------GGGEEEECSCCEEEC-SSSEEEEEECTTSCTTCEEEEE-
T ss_pred ----H---H---HHHh--------cccc---cCCC------ccceEecCCCCEEEE-CCEEEEEEECCCCCCccEEEEE-
Confidence 0 0 0000 0000 0000 024567788889998 578888776 479999999864
Q ss_pred eCCeeEEEecCCCC
Q 012717 237 GAKGNIAYISGSNF 250 (458)
Q Consensus 237 ~~~~~i~ytgD~~~ 250 (458)
.+++|+||...
T Consensus 158 ---~~~lf~GD~~~ 168 (261)
T 3adr_A 158 ---DDFLFTGDSAG 168 (261)
T ss_dssp ---TTEEEEETSSC
T ss_pred ---CCEEEEcCccc
Confidence 48999999853
No 34
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=99.09 E-value=1.1e-10 Score=116.67 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=92.3
Q ss_pred CceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCCc
Q 012717 15 PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSF 94 (458)
Q Consensus 15 ~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~~ 94 (458)
.+||||+.++..||+|||.... |.+. ...+...... ..+++.+
T Consensus 97 ~n~~LI~~~~~~iLIDtG~~~~----~~~~--------------------------~~~l~~~L~~-------~Gi~~~~ 139 (331)
T 1p9e_A 97 VTGYLVNTGSKLVLVDTGAAGL----FGPT--------------------------LGRLAANLKA-------AGYQPEQ 139 (331)
T ss_dssp EEEEEEECSSCEEEECCCCTTS----SCTT--------------------------CCCHHHHHHH-------TTCCGGG
T ss_pred EEEEEEEECCEEEEEECCCCCc----CCcc--------------------------hhHHHHHHHH-------cCCCHHH
Confidence 4599999999999999998742 1000 0011000000 1256779
Q ss_pred ccEEEecCC--CCcchhhhhhcccCC-cceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 95 IDVVLISSP--MGMLGLPFLTRMEGF-SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 95 IDaVlISHa--DH~g~LP~L~~~~gf-~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
||+|++||. ||+|+++.+.+. -| +.+||+++.+.+... +.... . + .++. +... .+..
T Consensus 140 Id~VilTH~H~DHiggl~~~~~~-~fp~a~v~~~~~~~~~~~----~~~~~-~---~--~~~~-----~~~~-~~~~--- 199 (331)
T 1p9e_A 140 VDEIYITHMHPDHVGGLMVGEQL-AFPNAVVRADQKEADFWL----SQTNL-D---K--APDD-----ESKG-FFKG--- 199 (331)
T ss_dssp CCEEECSCCCHHHHGGGEETTEE-SSTTCEEECBHHHHHHHS----CHHHH-T---T--CSST-----TSCH-HHHH---
T ss_pred CCEEEeCCcccccCCcccccccc-cCCCCEEEECHHHHHHHh----Cchhh-c---c--Cchh-----hhhH-HHHH---
Confidence 999999999 999999844322 24 689999998876321 10000 0 0 0000 0000 0000
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHH--HhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDC--ISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~--~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
..+.++.. -.+++.+.-++.+. .++++...+ ||..|++.+.++.++++++|+||..
T Consensus 200 -------------------~~~~~~~~~~~~~~~~~~~g~~i~--~gi~vi~tp-GHtpG~~~~~i~~~~~~vlf~GD~~ 257 (331)
T 1p9e_A 200 -------------------AMASLNPYVKAGKFKPFSGNTDLV--PGIKALASH-GHTPGHTTYVVESQGQKLALLGDLI 257 (331)
T ss_dssp -------------------HHHHHHHHHHTTCBCCBCSSEECS--TTEEEEECT-TSSTTCEEEEEEETTEEEEECTTSC
T ss_pred -------------------HHHHhhhhcccCceEEeCCCCEEc--ccEEEEEcC-CCChhCEEEEEEECCcEEEEEECcc
Confidence 01111111 13455555555443 457877664 9999999999999899999999986
Q ss_pred C
Q 012717 250 F 250 (458)
Q Consensus 250 ~ 250 (458)
.
T Consensus 258 ~ 258 (331)
T 1p9e_A 258 L 258 (331)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=99.09 E-value=1.4e-10 Score=111.96 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=69.1
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
+++.+||+|++||. ||+|+++.+. +.+||+++.+.+....... .. ...|.. ..|..
T Consensus 84 ~~~~~i~~VilTH~H~DH~gg~~~~~-----~a~v~~~~~~~~~~~~~~~----~~---~~~~~~-----~~~~~----- 141 (274)
T 3aj3_A 84 LEPRDIDVVVNSHFHFDHCGGNKYFP-----HAKKICHRSEVPQACNPQP----FE---HLGYSD-----LSFSA----- 141 (274)
T ss_dssp CCGGGCCEEECSCCSGGGTTTGGGCT-----TSEEEEETTHHHHHHSCCG----GG---TTTTCC-----CTTCH-----
T ss_pred CCHHHCCEEEecCcCcccCCchhhCC-----CCEEEECHHHHHHHhCcCC----cc---ccccCh-----hhhcc-----
Confidence 45778999999999 9999999872 5799999988764321000 00 000000 00100
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCc-EEEEEecCCCCCCceEEEEEeC-CeeEEEe
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI-LIIKAFSSGLDIGACNWIISGA-KGNIAYI 245 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~-l~i~~~~aGH~lGsa~~~I~~~-~~~i~yt 245 (458)
..+.........-.... .. -.++..++ +.+++ ++ +++...+ ||..|++++.++.+ +++++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~--~~~~l-~g~~~v~~~p-GHt~g~~~~~~~~~~~~~~lf~ 205 (274)
T 3aj3_A 142 EAAEARGATAQLLEGTT---RA---------NSTFEGID--GDVDL-ARGVKLISTP-GHSIGHYSLLVEFPRRKPILFT 205 (274)
T ss_dssp HHHHHHTCGGGCCTTCC---ST---------TSCEEEEC--SSEEE-ETTEEEEECT-TSSTTCEEEEECCSSSCCEEEE
T ss_pred ccccccccccccccccc---cC---------CCCceEcC--Ccccc-CCEEEEEECC-CCCceeeEEEEECCCCCEEEEE
Confidence 00000000000000000 00 01334443 45777 55 8887775 89999999999876 6799999
Q ss_pred cCCCC
Q 012717 246 SGSNF 250 (458)
Q Consensus 246 gD~~~ 250 (458)
||...
T Consensus 206 GD~~~ 210 (274)
T 3aj3_A 206 IDAAY 210 (274)
T ss_dssp ETTCS
T ss_pred echhh
Confidence 99753
No 36
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=99.07 E-value=1e-09 Score=107.80 Aligned_cols=153 Identities=12% Similarity=0.006 Sum_probs=93.5
Q ss_pred CCceEEE-EECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCccccccccccc-C
Q 012717 14 FPPCHIL-NVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLW-N 91 (458)
Q Consensus 14 ~~sc~LL-e~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~-d 91 (458)
..+|||+ +.++..||+|||..... . . -...+.. .+ +
T Consensus 23 ~~n~~li~~~~~~~iLID~G~~~~~-----------------------~------~-~~~~l~~------------~~~~ 60 (303)
T 2vw8_A 23 QVPVFLLRLGEASWALVEGGISRDA-----------------------E------L-VWADLCR------------WVAD 60 (303)
T ss_dssp TSCEEEEEEETTEEEEECCCCGGGH-----------------------H------H-HHHHHHH------------HCSC
T ss_pred CceEEEEEeCCCceEEEECCCCCcH-----------------------H------H-HHHHHHH------------HhcC
Confidence 5889999 48899999999985310 0 0 0011110 02 4
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHH-HHH-HHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMME-ELI-CMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~-d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
..+|++|++||. ||+|+++.+.+.++ +.+||+++.+.+....... ... .+..... ..|..
T Consensus 61 ~~~i~~Ii~TH~H~DH~gg~~~l~~~~~-~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----- 124 (303)
T 2vw8_A 61 PSQVHYWLITHKHYDHCGLLPYLCPRLP-NVQVLASERTCQAWKSESAVRVVERLNRQLL----------RAEQR----- 124 (303)
T ss_dssp GGGEEEEECCCCSTTTTTTHHHHGGGCT-TCEEEEEHHHHHHTTCHHHHHHHHHHHHHTC----------CTTCC-----
T ss_pred cccceEEEeccCCccccCCHHHHHHhCC-CCeEEECHHHHHHHhccchhhHHHHHHHHHH----------Hhhcc-----
Confidence 568999999999 99999999987532 6899999998875432110 000 0000000 00000
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEEEeCCeeEEEec
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYIS 246 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I~~~~~~i~ytg 246 (458)
.. ....+.+ ..++.+.-++.+++.+++++++..+ ||..|++++.+. +.+++|+|
T Consensus 125 -------------~~-~~~~~~~---------~~~~~~~~g~~~~lg~g~~l~~i~~pGHt~g~~~~~~~--~~~~lf~G 179 (303)
T 2vw8_A 125 -------------LP-EACAWDA---------LPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDV--RRRRLFCG 179 (303)
T ss_dssp -------------CC-CCCCGGG---------SCEEEECTTCEEEEETTEEEEEEECTTSSTTCEEEEET--TTTEEEEE
T ss_pred -------------cc-cccCCCC---------CCceEcCCCCEEecCCCeEEEEEECCCCCcccEEEEEC--CCCEEEEc
Confidence 00 0000000 1236778888999854466666544 999999998885 57899999
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 180 D~~ 182 (303)
T 2vw8_A 180 DAL 182 (303)
T ss_dssp TTT
T ss_pred Ccc
Confidence 985
No 37
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.07 E-value=1.1e-10 Score=119.12 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=71.9
Q ss_pred CCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 012717 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (458)
+..+||+|++||. ||+|+++.|.++++ ..+||+++.+.++.+. .. +..
T Consensus 68 ~~~~i~~iiiTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~~~~----~~----------~~~--------------- 117 (402)
T 1e5d_A 68 DPKKIDYLVIQHLELDHAGALPALIEACQ-PEKIFTSSLGQKAMES----HF----------HYK--------------- 117 (402)
T ss_dssp CGGGCCEEEECCCSHHHHTTHHHHHHHHC-CSEEEEEHHHHHHHHH----HH----------CCS---------------
T ss_pred CcccCCEEEeCCCCccccccHHHHHHHCC-CCEEEEChHHHHHHHH----Hh----------CCC---------------
Confidence 5678999999999 99999999987532 5899999998774321 11 000
Q ss_pred chhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC--CCCCCceEEEEEeCCeeEEEec
Q 012717 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a--GH~lGsa~~~I~~~~~~i~ytg 246 (458)
. ..++.+..++.+++ |+++++++.+ ||..|++.+.+ .+.+++|+|
T Consensus 118 ------------------~------------~~~~~~~~g~~~~~-g~~~~~~~~~p~gH~~~~~~~~~--~~~~~l~~G 164 (402)
T 1e5d_A 118 ------------------D------------WPVQVVKHGETLSL-GKRTVTFYETRMLHWPDSMVSWF--ADEKVLISN 164 (402)
T ss_dssp ------------------S------------CCEEEECTTCEEEC-SSCEEEEEECTTSSSTTCEEEEE--TTTTEEEEE
T ss_pred ------------------C------------CceEEcCCCCEEEE-CCCEEEEEeCCCCCCCCcEEEEE--CCCCEEEec
Confidence 0 13567778889998 5667777655 79999998766 567999999
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 165 D~~ 167 (402)
T 1e5d_A 165 DIF 167 (402)
T ss_dssp TTT
T ss_pred ccc
Confidence 984
No 38
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=99.05 E-value=4.9e-10 Score=104.99 Aligned_cols=128 Identities=13% Similarity=0.056 Sum_probs=89.6
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
.+.+||+|+.++..||+|||..... ...+. ..... ...
T Consensus 25 ~~~n~~li~~~~~~iLiD~G~~~~~---------------------------------~~~~~---~~l~~------~~g 62 (223)
T 1m2x_A 25 YAANAVYLVTDKGVVVIDCPWGEDK---------------------------------FKSFT---DEIYK------KHG 62 (223)
T ss_dssp EEEEEEEEEETTEEEEESCCSSGGG---------------------------------HHHHH---HHHHH------HHC
T ss_pred ccccEEEEEeCCEEEEEeCCCChhH---------------------------------HHHHH---HHHHH------HhC
Confidence 3578999999999999999986321 00110 01000 101
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (458)
.+|++|++||. ||+|+++.+.+ ...+||+++.+.+..+ + . +
T Consensus 63 ~~i~~vi~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~----~------~-----~------------------- 105 (223)
T 1m2x_A 63 KKVIMNIATHSHDDRAGGLEYFGK---IGAKTYSTKMTDSILA----K------E-----N------------------- 105 (223)
T ss_dssp CCEEEEECSSSSTTTTTTHHHHHH---TTCEEEEEHHHHHHHH----H------T-----T-------------------
T ss_pred CCeEEEEeccCCccccCchhhHhh---CCCeEEEcHHHHHHHH----h------c-----C-------------------
Confidence 47999999998 99999999876 3689999998866321 1 0 0
Q ss_pred hhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe--cCCCCCCceEEEEEeCCeeEEEecCC
Q 012717 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGS 248 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~--~aGH~lGsa~~~I~~~~~~i~ytgD~ 248 (458)
.. . ....+.-++.+++ ++.+++++ ..||..|++.+.+. +.+++|+||.
T Consensus 106 ------------~~----~-----------~~~~~~~g~~~~~-g~~~i~~~~~~pgHt~~~~~~~~~--~~~~lf~GD~ 155 (223)
T 1m2x_A 106 ------------KP----R-----------AQYTFDNNKSFKV-GKSEFQVYYPGKGHTADNVVVWFP--KEKVLVGGCI 155 (223)
T ss_dssp ------------CC----C-----------CSEEESSCEEEEE-TTEEEEEECCCSSSSSSCCEEEET--TTTEEEEETT
T ss_pred ------------cc----C-----------CceecCCCceEEE-CCEEEEEEecCCCCCCCCEEEEEC--CCCEEEEecc
Confidence 00 0 1245667788888 56888887 57999999999874 5789999996
Q ss_pred C
Q 012717 249 N 249 (458)
Q Consensus 249 ~ 249 (458)
.
T Consensus 156 ~ 156 (223)
T 1m2x_A 156 I 156 (223)
T ss_dssp S
T ss_pred c
Confidence 4
No 39
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=99.04 E-value=5.1e-10 Score=104.62 Aligned_cols=80 Identities=9% Similarity=-0.061 Sum_probs=58.6
Q ss_pred cCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccC
Q 012717 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (458)
Q Consensus 12 ~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d 91 (458)
..+.+|||++.++..||+|||..... ...+.. .. ..++
T Consensus 20 ~~~~n~~li~~~~~~iLiD~G~~~~~---------------------------------~~~~~~---~l------~~~~ 57 (227)
T 3iog_A 20 YVQENSMVYFGAKGVTVVGATWTPDT---------------------------------ARELHK---LI------KRVS 57 (227)
T ss_dssp SSCEEEEEEECSSCEEEESCCSSHHH---------------------------------HHHHHH---HH------HTTC
T ss_pred cccCcEEEEEeCCeEEEEECCCChHH---------------------------------HHHHHH---HH------HHhc
Confidence 35788999999999999999975321 001100 00 0134
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHH
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L 136 (458)
..+|++|++||. ||+|+++.+.+ ++.+||+++.+.++.+...
T Consensus 58 ~~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~~~~~ 101 (227)
T 3iog_A 58 RKPVLEVINTNYHTDRAGGNAYWKS---IGAKVVSTRQTRDLMKSDW 101 (227)
T ss_dssp CSCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCchhhcChHHHHhh---CCCeEEECHHHHHHHHHhh
Confidence 678999999999 99999999865 4789999999988765433
No 40
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=99.01 E-value=8.4e-10 Score=107.67 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=92.9
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
+.+||||+.++..||+|||..... ..+.. .... ..+++.
T Consensus 57 ~~~~~li~~~~~~iLiD~G~~~~~----------------------------------~~~~~---~l~~----~g~~~~ 95 (303)
T 4ax1_B 57 GISALLVTSDAGHILVDAATPQAG----------------------------------PQILA---NIRA----LGFRPE 95 (303)
T ss_dssp SSCCEEECCTTCEEEECCBSTTCH----------------------------------HHHHH---HHHH----TTCCGG
T ss_pred CceEEEEEeCCcEEEEECCCcccH----------------------------------HHHHH---HHHH----cCCCHH
Confidence 578999999999999999975321 00100 0000 113556
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+||+|++||. ||+|+++.+.++ +..+||+++.+.++.+... .. .....|..
T Consensus 96 ~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~l~~~~---------------~~-~~~~~~~~--------- 148 (303)
T 4ax1_B 96 DVRAIVFSHEHFDHAGSLAELQKA--TGAPVYARAPAIDTLKRGL---------------PD-RTDPNFEV--------- 148 (303)
T ss_dssp GEEEEECSCSSHHHHTTHHHHHHH--HCCCEEEEHHHHHHHHHTS---------------CC-TTSTTGGG---------
T ss_pred HCcEEEcCCCCccccCCHHHHHhh--cCCEEEEcHHHHHHHhccc---------------cC-cccccccc---------
Confidence 7999999999 999999999875 3689999998877432110 00 00000100
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEEEeCC----eeEEEec
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAK----GNIAYIS 246 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I~~~~----~~i~ytg 246 (458)
.. .+.+ ....+.+..++.+++ |+++++++. .||..|++.|.++... ..++| |
T Consensus 149 ---------~~----~~~~--------~~~~~~~~~g~~~~~-g~~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~l~-g 205 (303)
T 4ax1_B 149 ---------AE----PVAP--------VANIVTLADDGVVSV-GPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVY-A 205 (303)
T ss_dssp ---------CC----CCCC--------CSCEEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEE-C
T ss_pred ---------cc----CcCC--------CCCcEEeCCCCEEEE-CCeEEEEEeCCCCCccceEEEEEecCCCceeEEEE-e
Confidence 00 0000 124678889999999 567777664 6899999999987642 24555 8
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 206 D~l 208 (303)
T 4ax1_B 206 DSL 208 (303)
T ss_dssp CCC
T ss_pred CCc
Confidence 875
No 41
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=99.01 E-value=1.3e-09 Score=104.92 Aligned_cols=143 Identities=18% Similarity=0.126 Sum_probs=90.3
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
+.+||||+.++..||+|||..... +.+. +.... ..+++.
T Consensus 37 ~~~~~li~~~~~~iLID~G~~~~~----------------------------------~~l~---~~l~~----~g~~~~ 75 (269)
T 1sml_A 37 DLTALLVQTPDGAVLLDGGMPQMA----------------------------------SHLL---DNMKA----RGVTPR 75 (269)
T ss_dssp TBCCEEEEETTEEEEECCBSGGGH----------------------------------HHHH---HHHHH----TTCCGG
T ss_pred CcEEEEEEeCCceEEEECCCCccH----------------------------------HHHH---HHHHH----cCCChH
Confidence 468999999999999999975310 0010 00000 114556
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+||+|++||. ||+|+++.|.+. +..+||+++.+.++.+ +. . ... ..|...
T Consensus 76 ~i~~IilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~l~----~~-----------~-~~~--~~~~~~-------- 127 (269)
T 1sml_A 76 DLRLILLSHAHADHAGPVAELKRR--TGAKVAANAESAVLLA----RG-----------G-SDD--LHFGDG-------- 127 (269)
T ss_dssp GEEEEECSCCSHHHHTTHHHHHHH--SSCEEEECHHHHHHHH----TT-----------T-CSB--TTTBTS--------
T ss_pred HCcEEEeCCCCccccCCHHHHHHh--cCCeEEECHHHHHHHh----cC-----------C-ccc--cccccc--------
Confidence 8999999999 999999999875 4689999998866421 10 0 000 000000
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEEEeC--Ce--eEEEec
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGA--KG--NIAYIS 246 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I~~~--~~--~i~ytg 246 (458)
..+.+. ...+.+.-++.+++ |+++++++.. ||..|+.++.++.. +. .++| |
T Consensus 128 --------------~~~~~~--------~~~~~~~~g~~~~~-g~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~l~~-g 183 (269)
T 1sml_A 128 --------------ITYPPA--------NADRIVMDGEVITV-GGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAY-A 183 (269)
T ss_dssp --------------SCCCCC--------CCSEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEE-C
T ss_pred --------------cCCCCC--------CCCeEeCCCCEEEE-CCEEEEEEECCCCCcccEEEEEecccCCceeEEEE-e
Confidence 000010 12356777888998 5778877654 89999999998752 32 4555 8
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 184 D~l 186 (269)
T 1sml_A 184 DSL 186 (269)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 42
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=98.99 E-value=7.1e-10 Score=113.05 Aligned_cols=132 Identities=13% Similarity=0.003 Sum_probs=91.7
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCccccccccccc---
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLW--- 90 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--- 90 (458)
..+|||++.++..+|+|||..... ..+. ..... .+
T Consensus 34 ~~n~~li~~~~~~iLiD~g~~~~~----------------------------------~~~~---~~l~~-----~~~~~ 71 (404)
T 2ohh_A 34 TYNAYLVCGDEGVALIDNSYPGTF----------------------------------DELM---ARVED-----ALQQV 71 (404)
T ss_dssp EECCEEEECSSCEEEECCCCTTCH----------------------------------HHHH---HHHHH-----HHHHH
T ss_pred eEEEEEEEeCCcEEEEeCCCCccH----------------------------------HHHH---HHHHH-----HhccC
Confidence 357999999888999999986310 0110 00000 02
Q ss_pred CCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 012717 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (458)
+..+||+|++||. ||+|+++.|.++++ ..+||+++.+.+..+ +.. +
T Consensus 72 ~~~~i~~ii~TH~H~DH~gg~~~l~~~~p-~~~v~~~~~~~~~~~----~~~----------~----------------- 119 (404)
T 2ohh_A 72 GMERVDYIIQNHVEKDHSGVLVELHRRFP-EAPIYCTEVAVKGLL----KHY----------P----------------- 119 (404)
T ss_dssp TCCCCCEEECSCCSHHHHTTHHHHHHHST-TCCEEECHHHHHHHH----HHC----------G-----------------
T ss_pred CccCCCEEEeCCCCCcccchHHHHHHHCC-CCEEEECHHHHHHHH----HHh----------c-----------------
Confidence 4678999999999 99999999987532 689999998876422 110 0
Q ss_pred chhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC--CCCCCceEEEEEeCCeeEEEec
Q 012717 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a--GH~lGsa~~~I~~~~~~i~ytg 246 (458)
.+. . ..++.+.-++.+++ ++.+++++.+ ||..|+..+.+. ..+++|+|
T Consensus 120 ~~~---------------~------------~~~~~~~~g~~~~~-g~~~i~~~~~p~gH~~~~~~~~~~--~~~~lf~G 169 (404)
T 2ohh_A 120 SLR---------------E------------AEFMTVKTGDVLDL-GGKTLTFLETPLLHWPDSMFTLLD--EDGILFSN 169 (404)
T ss_dssp GGG---------------G------------SCEEECCTTCEEEC-SSCEEEEEECTTSSSTTCEEEEEE--TTTEEECT
T ss_pred ccc---------------c------------CCceEcCCCCEEEE-CCEEEEEEeCCCCCCCCceEEEEC--CCcEEEec
Confidence 000 0 13466778888998 5677777766 799999998874 46899999
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 170 D~~ 172 (404)
T 2ohh_A 170 DAF 172 (404)
T ss_dssp TTT
T ss_pred Ccc
Confidence 975
No 43
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=98.99 E-value=3.1e-09 Score=104.36 Aligned_cols=162 Identities=18% Similarity=0.263 Sum_probs=101.2
Q ss_pred CEEEEecCCCCcCCCceEEEEE--CCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccccc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNV--SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~--~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (458)
|+++.+-... .+.+||||.. ++..||+|||+.... .....+ . . +...+.
T Consensus 5 m~i~~~~~~~--~~~~~yli~~~~~~~~ilID~g~~~~~------~~~~~~--------~-~---------~~~~l~--- 55 (298)
T 4efz_A 5 MTVEGFFDPA--TCTISYLLFDSGSGECALIDSVLDYDP------KSGRTR--------T-A---------SADQLI--- 55 (298)
T ss_dssp CEEEEEECTT--TCBEEEEEECTTTCEEEEESCCBEEET------TTTEEE--------C-H---------HHHHHH---
T ss_pred eEEEEEecCC--cccEEEEEEECCCCeEEEEcCCCCccc------cccccC--------c-c---------cHHHHH---
Confidence 7787776542 3678999976 678999999986421 000000 0 0 001110
Q ss_pred CcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012717 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (458)
Q Consensus 79 p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (458)
.+.+. .. .+|++||+||. ||++|++.|.+++ .++||+++.+.++.+.. . ..++....
T Consensus 56 ~~l~~------~g-~~i~~Il~TH~H~DH~gg~~~l~~~~--~a~i~~~~~~~~~~~~~----~-------~~~~~~~~- 114 (298)
T 4efz_A 56 ARVAA------LG-ARVRWLLETHVHADHLSAAPYLKTRV--GGEIAIGRHVTRVQDVF----G-------KLFNAGPA- 114 (298)
T ss_dssp HHHHH------HT-CEEEEEECSSCCSSSBCCHHHHHHHH--CCEEEEETTHHHHHHHH----H-------HHTTCCTT-
T ss_pred HHHHH------CC-CcceEEEECCCchhhhhhHHHHHHHh--CCcEEEChhHHHHHHHH----H-------HhcCCccc-
Confidence 01000 11 25999999999 9999999998754 68999999887653311 0 01110000
Q ss_pred CccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEE
Q 012717 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII 235 (458)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I 235 (458)
+. .. . . ...+.+.-++.+.+ |++++++..+ ||..|++.+.+
T Consensus 115 ---~~---------------------~~--~-~----------~~~~~~~~g~~l~~-g~~~i~vi~tPGHT~g~~~~~~ 156 (298)
T 4efz_A 115 ---FA---------------------HD--G-S----------QFDRLLDDGDTLAL-GALSIRAMHTPGHTPACMTYVV 156 (298)
T ss_dssp ---SC---------------------SS--S-T----------TSSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEE
T ss_pred ---cc---------------------cc--c-c----------CCCEEeCCCCEEEE-CCEEEEEEECCCCCcccEEEEE
Confidence 00 00 0 0 11257788999999 6777776654 89999999999
Q ss_pred EeCCee------EEEecCCCC
Q 012717 236 SGAKGN------IAYISGSNF 250 (458)
Q Consensus 236 ~~~~~~------i~ytgD~~~ 250 (458)
..++++ ++|+||+..
T Consensus 157 ~~~~~~~~~~~~~lftGD~l~ 177 (298)
T 4efz_A 157 TEAHAAHDARDAAAFVGDTLF 177 (298)
T ss_dssp EETTCCGGGCBCEEECCSSBC
T ss_pred CCCcccccCCceEEEEcCccc
Confidence 987655 999999853
No 44
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=98.99 E-value=1.7e-09 Score=101.52 Aligned_cols=154 Identities=9% Similarity=-0.011 Sum_probs=93.1
Q ss_pred EEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccc
Q 012717 4 TCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKT 83 (458)
Q Consensus 4 ~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 83 (458)
..+.++ ...+.+||+++.++..||+|||..... ...+.. ..
T Consensus 16 ~~i~~~-~~~~~n~~li~~~~~~iLiD~G~~~~~---------------------------------~~~~~~---~l-- 56 (233)
T 3q6v_A 16 YIVEDK-EYVQENSMVYIGTDGITIIGATWTPET---------------------------------AETLYK---EI-- 56 (233)
T ss_dssp EEEEEC-SSSCEEEEEEECSSCEEEESCCSSHHH---------------------------------HHHHHH---HH--
T ss_pred EEEeCC-CcCCCcEEEEEeCCeEEEEECCCCHHH---------------------------------HHHHHH---HH--
Confidence 344443 245788999999999999999986421 001100 00
Q ss_pred cccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccch
Q 012717 84 VNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWM 161 (458)
Q Consensus 84 ~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~ 161 (458)
..+...+|++|++||. ||+|+++.+.+ ...+||+++.+.++.+............ +
T Consensus 57 ----~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~---------- 114 (233)
T 3q6v_A 57 ----RKVSPLPINEVINTNYHTDRAGGNAYWKT---LGAKIVATQMTYDLQKSQWGSIVNFTRQ-----G---------- 114 (233)
T ss_dssp ----HHHCCCCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHHHHHHHHHHHHHH-----H----------
T ss_pred ----HHhcCCCcEEEEECCCChhhhChHHHHhh---CCCEEEEcHHHHHHHHhhhHHHHHHHhc-----c----------
Confidence 0124568999999999 99999999974 3689999999988765433322211110 0
Q ss_pred hhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCee
Q 012717 162 KWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGN 241 (458)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~ 241 (458)
...++ ... ... ....+.-+..+.. +.+++.....||..|++.+.+. ..+
T Consensus 115 ----~~~~~-----------~~~--~~~-----------~~~~~~~~~~l~~-~~~~v~~~~pGHt~g~~~~~~~--~~~ 163 (233)
T 3q6v_A 115 ----NNKYP-----------NLE--KSL-----------PDTVFPGDFNLQN-GSIRAMYLGEAHTKDGIFVYFP--AER 163 (233)
T ss_dssp ----STTCC-----------CCC--CCC-----------CSEEESSCEEETT-TTEEEECCCCSSSSSCCEEEET--TTT
T ss_pred ----ccccc-----------ccc--ccC-----------CCEEeCCCeEEcC-ceEEEEECCCCCCcCcEEEEec--cCC
Confidence 00000 000 000 1122333333322 3578777778999999998874 567
Q ss_pred EEEecCCCC
Q 012717 242 IAYISGSNF 250 (458)
Q Consensus 242 i~ytgD~~~ 250 (458)
++| ||...
T Consensus 164 ~lf-gD~~~ 171 (233)
T 3q6v_A 164 VLY-GNCIL 171 (233)
T ss_dssp EEE-CTTTS
T ss_pred EEE-Cceec
Confidence 899 99753
No 45
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=98.98 E-value=1.5e-09 Score=106.92 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=95.9
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
..+||||+.++..||+|||..... .. ..+.. ..+. ..+++.
T Consensus 21 ~~n~~li~~~~~~ilID~G~~~~~----------------------~~----------~~l~~---~l~~----~g~~~~ 61 (317)
T 2zo4_A 21 TVNLYLLQGAGEVALVDTALGTRA----------------------AR----------GALEL---HLAE----LGLCFQ 61 (317)
T ss_dssp EEEEEEEEETTEEEEECCCCSSHH----------------------HH----------HHHHH---HHHH----TTCCGG
T ss_pred cEEEEEEEcCCceEEEECCCCCHH----------------------HH----------HHHHH---HHHH----cCCChh
Confidence 477999999999999999987421 00 00100 0000 113456
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHH---HHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEEL---ICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (458)
+|++|++||. ||+|+++.+.++ ..+||+++.+.+..+...... ...........|.... +. .
T Consensus 62 ~i~~Vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~-----~- 128 (317)
T 2zo4_A 62 DVKTILLTHHHPDHYGLSGFFEGL---GARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEG----AL-----Q- 128 (317)
T ss_dssp GCCEEEESCCSHHHHTTHHHHHHT---TCEEEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC--------------
T ss_pred hcCEEEEcCCCCcccccHHHHHhC---CCEEEEcHHHHHHHHhhhhhhhhHHHHHHHHHHHcCCCHH----HH-----H-
Confidence 8999999999 999999999874 689999999877543321100 0000000000010000 00 0
Q ss_pred chhhhhhhhcCCCCCCCCCCCchHHHHH---HHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEEEeCCeeEEE
Q 012717 169 LPSALRKIALGEDGSELGGGCPCIAHVK---DCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAY 244 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~---~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I~~~~~~i~y 244 (458)
.+........ ........+.-++.+++ |+.++++..+ ||..|++++.+ .+.+++|
T Consensus 129 ------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-gg~~~~~i~tpGHt~g~~~~~~--~~~~~lf 187 (317)
T 2zo4_A 129 ------------------GIRETVEKTRERVHPPQNPLPLRDGEALEV-AGKRLRVLWTPGHADGHAAFYL--EEEGVLL 187 (317)
T ss_dssp ---------------------CHHHHHHTTCCCCSSCEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEE--TTTTEEE
T ss_pred ------------------HHHHhcccccccCCCCCCceEECCCCEEEe-CCceEEEEECCCCCcccEEEEe--CCCCEEE
Confidence 0000000000 00023567788889998 5678877766 99999999875 5678999
Q ss_pred ecCCCC
Q 012717 245 ISGSNF 250 (458)
Q Consensus 245 tgD~~~ 250 (458)
+||...
T Consensus 188 ~GD~~~ 193 (317)
T 2zo4_A 188 AGDALL 193 (317)
T ss_dssp EETSCC
T ss_pred ECCEec
Confidence 999764
No 46
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.98 E-value=3.9e-11 Score=114.03 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=89.2
Q ss_pred cCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccC
Q 012717 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (458)
Q Consensus 12 ~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d 91 (458)
..+.+||||+.++..||+|||..... ...+. ..... ..
T Consensus 45 ~~~~n~~li~~~~~~iLID~G~~~~~---------------------------------~~~l~---~~l~~------~~ 82 (243)
T 4hl2_A 45 AVASNGLIVRDGGRVLVVDTAWTDDQ---------------------------------TAQIL---NWIKQ------EI 82 (243)
T ss_dssp EEEEEEEEEEETTEEEEESCCSSHHH---------------------------------HHHHH---HHHHH------HT
T ss_pred cccceEEEEEECCcEEEEECCCCCcc---------------------------------HHHHH---HHHHH------hh
Confidence 35679999999999999999975321 01110 00000 10
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (458)
..+|++|++||. ||+|+++.+.+. +.+||+++.+.++.+ + . +... ..+ .+
T Consensus 83 ~~~i~~vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~----~------~-----~~~~---~~~-------~~ 134 (243)
T 4hl2_A 83 NLPVALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQLAP----Q------E-----GMVA---AQH-------SL 134 (243)
T ss_dssp CCCEEEEEECSSSHHHHTTHHHHHHT---TCEEEEEHHHHHHGG----G------T-----TCCC---CSE-------EE
T ss_pred CCCeeEEEECCCCccccCCHHHHHhC---CCeEEECHHHHHHHh----c------c-----cccc---ccc-------cc
Confidence 236999999999 999999999873 689999998865321 0 0 0000 000 00
Q ss_pred hhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCCC
Q 012717 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
.+ .....+..++.+++ +++++.....||..|++++.+. +.+++|+||..
T Consensus 135 -----------------~~-----------~~~~~~~~g~~~~~-g~~~v~~~~pGHt~g~~~~~~~--~~~~lf~GD~~ 183 (243)
T 4hl2_A 135 -----------------TF-----------AANGWVEPATAPNF-GPLKVFYPGPGHTSDNITVGID--GTDIAFGGCLI 183 (243)
T ss_dssp -----------------CB-----------CTTSBBCGGGSTTC-TTEEEECCCSSSSTTCCEEEET--TTTEEECTTTC
T ss_pred -----------------cc-----------ccceEecCCCeEEE-CCEEEEeCCCCCCcCCEEEEEc--CCCEEEEccee
Confidence 00 01233455566666 5788866788999999999885 56899999975
Q ss_pred C
Q 012717 250 F 250 (458)
Q Consensus 250 ~ 250 (458)
.
T Consensus 184 ~ 184 (243)
T 4hl2_A 184 K 184 (243)
T ss_dssp C
T ss_pred e
Confidence 3
No 47
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=98.97 E-value=2.2e-09 Score=101.76 Aligned_cols=118 Identities=10% Similarity=0.061 Sum_probs=71.0
Q ss_pred CCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 012717 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (458)
+...+ +|++||. ||+|+++.+.+ +..+||+++.+.++.+........... +.+.. ..+
T Consensus 66 ~~~~~-~vi~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~-- 125 (246)
T 2fhx_A 66 KPKKV-VAINTHFHLDGTGGNEIYKK---MGAETWSSDLTKQLRLEENKKDRIKAA---EFYKN-----------EDL-- 125 (246)
T ss_dssp CCSEE-EEECCSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHHHHHHHHHHHHH---HHCCC-----------HHH--
T ss_pred CCCcE-EEEeCCCCccccChHHHHhh---cCCEEEEcHHHHHHHHhcchhhhHHHH---hhhcc-----------ccc--
Confidence 34456 7999999 99999999875 368999999998865433221110000 00100 000
Q ss_pred chhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe--cCCCCCCceEEEEEeCCeeEEEec
Q 012717 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYIS 246 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~--~aGH~lGsa~~~I~~~~~~i~ytg 246 (458)
+..+... . ... -+++..+.-++.+++ |+.++++. ..||..|++.+.+. +.+++|+|
T Consensus 126 -~~~~~~~----~-----~~~---------~~~~~~~~~g~~l~~-g~~~i~~~~~~pGHt~g~~~~~~~--~~~~lf~G 183 (246)
T 2fhx_A 126 -KRRILSS----H-----PVP---------ADNVFDLKQGKVFSF-SNELVEVSFPGPAHSPDNVVVYFP--KKKLLFGG 183 (246)
T ss_dssp -HHHHHHT----C-----CCC---------CSEEECTTTCEEEEE-TTEEEEEECCCCSSSTTCCEEEET--TTTEEEEE
T ss_pred -hhhhccc----c-----cCC---------CCceeecCCCCEEEE-CCEEEEEEeCCCCCCCCCEEEEEc--CCCEEEEC
Confidence 0000000 0 000 012345566778888 56778776 47999999998874 57899999
Q ss_pred CCCC
Q 012717 247 GSNF 250 (458)
Q Consensus 247 D~~~ 250 (458)
|...
T Consensus 184 D~~~ 187 (246)
T 2fhx_A 184 CMIK 187 (246)
T ss_dssp TTCC
T ss_pred CEec
Confidence 9753
No 48
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=98.96 E-value=2e-09 Score=101.27 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=41.5
Q ss_pred EEeCCcEEEEEecCCCCCC-------ceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 211 ACYNGILIIKAFSSGLDIG-------ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 211 v~i~g~l~i~~~~aGH~lG-------sa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
+++ ++++|+++++.|..+ +++|+|+.++.+++|+||+..... ......+.++|+++++
T Consensus 81 ~~~-~~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g~~i~~~GDt~~~~~---~~~~~~~~~~Dvlil~ 145 (220)
T 1vjn_A 81 YTV-NGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLT---PAQVEEIGEIDVLLVP 145 (220)
T ss_dssp EEE-TTEEEEEEEEEEC-------CEEEEEEEEETTEEEEECTTCCSCCC---HHHHHHHCCCSEEEEE
T ss_pred EEE-CCEEEEEEeeecCCCCCccCCCcEEEEEEECCeEEEEeCCCCCcch---HHHHHhhCCCCEEEEc
Confidence 445 568999999989863 489999999999999999874320 0011224579999998
No 49
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=98.96 E-value=5.3e-10 Score=113.79 Aligned_cols=97 Identities=8% Similarity=-0.000 Sum_probs=71.0
Q ss_pred cCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 012717 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (458)
Q Consensus 90 ~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (458)
++..+||+|++||. ||+|+++.|.++++ ..+||+++.+.+.. .+. ++..
T Consensus 68 ~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~l----~~~----------~~~~-------------- 118 (398)
T 1ycg_A 68 KDPVKLDYLVVNHTESDHAGAFPAIMELCP-DAHVLCTQRAFDSL----KAH----------YSHI-------------- 118 (398)
T ss_dssp CSSCCCSEEEESCCSHHHHTTHHHHHHHCT-TCEEEECHHHHHHH----HHH----------TCSC--------------
T ss_pred cCcccCCEEEeCCCCcchhhhHHHHHHHCC-CCEEEEcHHHHHHH----HHH----------hCCC--------------
Confidence 35778999999999 99999999987532 68999999887632 211 0100
Q ss_pred hchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec--CCCCCCceEEEEEeCCeeEEEe
Q 012717 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYI 245 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~--aGH~lGsa~~~I~~~~~~i~yt 245 (458)
. ..++.+.-++.+++ |+++++++. .||..|++.+.+ .+.+++|+
T Consensus 119 -------------------~------------~~~~~~~~g~~~~~-g~~~~~~~~~p~gH~~~~~~~~~--~~~~~lf~ 164 (398)
T 1ycg_A 119 -------------------D------------FNYTIVKTGTSVSL-GKRSLTFIEAPMLHWPDSMFTYV--PEEALLLP 164 (398)
T ss_dssp -------------------C------------CEEEECCTTCEEEC-SSCEEEEEECTTSSSTTCEEEEE--TTTTEEEE
T ss_pred -------------------C------------cceEEeCCCCEEee-CCcEEEEEeCCCCCCCCcEEEEE--CCCcEEEe
Confidence 0 13456777888998 566776664 479999988765 56799999
Q ss_pred cCCC
Q 012717 246 SGSN 249 (458)
Q Consensus 246 gD~~ 249 (458)
||..
T Consensus 165 GD~~ 168 (398)
T 1ycg_A 165 NDAF 168 (398)
T ss_dssp ETTT
T ss_pred cccc
Confidence 9984
No 50
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=98.95 E-value=9.9e-10 Score=103.60 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
..+||||+.++..||+|||..... ...+. ..... ....
T Consensus 36 ~~n~~li~~~~~~iLiD~G~~~~~---------------------------------~~~~~---~~l~~------~~~~ 73 (232)
T 1a7t_A 36 PSNGMIVINNHQAALLDTPINDAQ---------------------------------TEMLV---NWVTD------SLHA 73 (232)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHH---------------------------------HHHHH---HHHHH------HHCC
T ss_pred cceEEEEEeCCEEEEEeCCCCHHH---------------------------------HHHHH---HHHHH------hcCC
Confidence 468999999999999999986321 00010 00000 1135
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+|++|++||. ||+|+++.+.+ ++.+||+++.+.++.+ +. + ++
T Consensus 74 ~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~----~~-----------~-----------------~~- 117 (232)
T 1a7t_A 74 KVTTFIPNHWHGDCIGGLGYLQR---KGVQSYANQMTIDLAK----EK-----------G-----------------LP- 117 (232)
T ss_dssp EEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHH----HH-----------T-----------------CC-
T ss_pred CeEEEEeCCCCccccCCHHHHHh---CCCeEEEcHHHHHHHH----hc-----------C-----------------CC-
Confidence 7999999999 99999999876 3689999998866321 10 0 00
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe--cCCCCCCceEEEEEeCCeeEEEecCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~--~aGH~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
.....+.-++.+.+ ++.+++++ ..||..|++++.+. ..+++|+||..
T Consensus 118 ----------------------------~~~~~~~~g~~~~~-g~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf~GD~~ 166 (232)
T 1a7t_A 118 ----------------------------VPEHGFTDSLTVSL-DGMPLQCYYLGGGHATDNIVVWLP--TENILFGGCML 166 (232)
T ss_dssp ----------------------------CCSEEESSEEEEEE-TTEEEEEECCCCSSSTTCCEEEET--TTTEEEEETTS
T ss_pred ----------------------------CCceecCCCCEEEE-CCeEEEEEeCCCCCCCCCEEEEEC--CCCEEEEcCcc
Confidence 01245566777888 56888887 47999999999874 46899999985
Q ss_pred C
Q 012717 250 F 250 (458)
Q Consensus 250 ~ 250 (458)
.
T Consensus 167 ~ 167 (232)
T 1a7t_A 167 K 167 (232)
T ss_dssp C
T ss_pred c
Confidence 4
No 51
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=98.95 E-value=2e-09 Score=114.54 Aligned_cols=200 Identities=14% Similarity=0.096 Sum_probs=107.9
Q ss_pred CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (458)
|++++|.-+.+ .++|+||+.++..||+|||..... |.... +.. ++.. +. .......-...+ .|+
T Consensus 6 ~~I~~ldvG~g--qg~~~lI~~~~~~iLID~G~~~~~-----~~~~~--~~~--~~~~-~~-~~~~~~~~~~~l---~~~ 69 (547)
T 2bib_A 6 NKIHFINVQEG--GSDAIILESNGHFAMVDTGEDYDF-----PDGSD--SRY--PWRE-GI-ETSYKHVLTDRV---FRR 69 (547)
T ss_dssp EEEEEECBSSS--BCCEEEEEETTEEEEEECCCCSCC-----CCSSS--TTS--CCCT-TC-CCCGGGCCHHHH---HHH
T ss_pred ceEEEEEcCCC--CceEEEEEeCCeEEEEeCCCCCcc-----ccccc--ccc--cccc-cc-cccccchhHHHH---HHH
Confidence 57888876522 578999999999999999986421 00000 000 0000 00 000000000111 222
Q ss_pred ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (458)
Q Consensus 81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (458)
.. ...+.+||+|||||+ ||+|+++.|.+.++ ..+||+++.+.+... +. . .
T Consensus 70 L~------~~gi~~id~vilTH~H~DHiggl~~l~~~~~-~~~i~~~~~~~~~~~----~~-------------~----~ 121 (547)
T 2bib_A 70 LK------ELSVQKLDFILVTHTHSDHIGNVDELLSTYP-VDRVYLKKYSDSRIT----NS-------------E----R 121 (547)
T ss_dssp HH------HTTCCCBSCEECCCSCHHHHTTHHHHHHHSC-BSEEECCCCCGGGBS----CG-------------G----G
T ss_pred HH------hcCcccccEEEEcCCCccccCCHHHHHHhCC-ccEEEECcccccccC----Ch-------------H----H
Confidence 21 135678999999999 99999999987543 236998876543110 00 0 0
Q ss_pred cchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHH--hcce----eeCCCCEEEeCCcEEEEEec---CCC---
Q 012717 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCI--SKVQ----TLRFGEEACYNGILIIKAFS---SGL--- 226 (458)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~--~~i~----~v~y~e~v~i~g~l~i~~~~---aGH--- 226 (458)
.|..... ..++.+.+ ..+. .+.-++.+++ ++++|++++ +.|
T Consensus 122 ~~~~~~~--------------------------~~~~~~~~~~~g~~~~~~~~~~g~~~~~-g~~~i~~l~~~~~~h~~~ 174 (547)
T 2bib_A 122 LWDNLYG--------------------------YDKVLQTATETGVSVIQNITQGDAHFQF-GDMDIQLYNYENETDSSG 174 (547)
T ss_dssp CTTHHHH--------------------------HHHHHHHHHHTTCEEECSCCTTTTEEEE-TTEEEEEESCSCCBCTTS
T ss_pred HHhHHHH--------------------------HHHHHHHHHHhCCeEEEeecCCCceEec-CCeeEEEecCccccCccc
Confidence 0000000 00111111 0111 2355678888 578888886 223
Q ss_pred --------CCCceEEEEEeCCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEc
Q 012717 227 --------DIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (458)
Q Consensus 227 --------~lGsa~~~I~~~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e 272 (458)
..+|+.++|+.++.+++|+||........... ...+..+|+|++.
T Consensus 175 ~~~~~~~~n~~S~vl~i~~~~~~iLftGD~~~~~~~e~~l-~~~~~~~DvLkv~ 227 (547)
T 2bib_A 175 ELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKY-GPLIGKVDLMKFN 227 (547)
T ss_dssp CBCCBSSGGGGCCEEEEEETTEEEEECTTCCSTTSHHHHH-HHHHCCCSEEECT
T ss_pred cccccCCCCCCcEEEEEEECCEEEEecCCccchhhhhhhh-cccccceeEEEec
Confidence 36799999999999999999986431000000 0112468999875
No 52
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=98.95 E-value=4.3e-10 Score=105.63 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=87.9
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
..+||+++.++..||+|||..... . ..+ .+..+. ....
T Consensus 40 ~~n~~li~~~~~~iliD~G~~~~~-----------------------~----------~~~---~~~l~~------~~~~ 77 (227)
T 1mqo_A 40 PSNGLVLNTSKGLVLVDSSWDDKL-----------------------T----------KEL---IEMVEK------KFQK 77 (227)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHH-----------------------H----------HHH---HHHHHH------HHTS
T ss_pred cceEEEEEeCCeEEEEECCCChHH-----------------------H----------HHH---HHHHHH------hcCC
Confidence 468999999999999999987420 0 001 000000 1146
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+|++|++||. ||+|+++.+.+. ..+||+++.+.++.+. . + ++
T Consensus 78 ~i~~ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~~----------~-----~-----------------~~- 121 (227)
T 1mqo_A 78 RVTDVIITHAHADRIGGIKTLKER---GIKAHSTALTAELAKK----------N-----G-----------------YE- 121 (227)
T ss_dssp CEEEEECCCCSHHHHTTHHHHHHH---TCEEECBHHHHHHHHH----------T-----T-----------------CC-
T ss_pred CceEEEeCCCCchhccchHHHhhC---CcEEEeccchHHHHHh----------c-----C-----------------CC-
Confidence 8999999999 999999999874 5899999988653210 0 0 00
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe--cCCCCCCceEEEEEeCCeeEEEecCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~--~aGH~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
..+..+.-++.+++ ++++++++ ..||..|++.+.+. +.+++|+||..
T Consensus 122 ----------------------------~~~~~~~~~~~~~~-g~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf~GD~~ 170 (227)
T 1mqo_A 122 ----------------------------EPLGDLQTVTNLKF-GNMKVETFYPGKGHTEDNIVVWLP--QYNILVGGCLV 170 (227)
T ss_dssp ----------------------------CCCCCBCSEEEEEE-TTEEEEEECCCCSSSSSCCEEEET--TTTEEEEETTS
T ss_pred ----------------------------CCccccCCCCeeeE-CCEEEEEEecCCCCCCCCEEEEEC--CCCEEEEeeee
Confidence 01223344567777 67888875 47999999999874 57899999975
No 53
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=98.94 E-value=1.8e-09 Score=106.97 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=68.3
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccC-----CcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhh
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEG-----FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWE 164 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~g-----f~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (458)
+.+|++||+||. ||+||++.|.+.+. ...+||++..+.
T Consensus 82 ~~~i~~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v~~~~~~~----------------------------------- 126 (311)
T 2p18_A 82 TYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDS----------------------------------- 126 (311)
T ss_dssp CCEEEEEEESSSSHHHHTTHHHHHHHHHSCC--CCCEEEEEGGGT-----------------------------------
T ss_pred CCCccEEEeCCCCccccCCHHHHHHhhhhcccCCCCEEEEechhc-----------------------------------
Confidence 358999999999 99999999987531 147899875430
Q ss_pred HhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEEEeCC---e
Q 012717 165 ELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAK---G 240 (458)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I~~~~---~ 240 (458)
++ .....+.-++.+.+ |++++++..+ ||..|++.+.++.++ .
T Consensus 127 ----~~-----------------------------~~~~~l~~g~~l~l-g~~~l~vi~tPGHT~g~i~~~~~~~~~~~~ 172 (311)
T 2p18_A 127 ----IP-----------------------------AVTKPVREGDRVQV-GDLSVEVIDAPCHTRGHVLYKVQHPQHPND 172 (311)
T ss_dssp ----CT-----------------------------TCSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEECTTCGGG
T ss_pred ----CC-----------------------------CCceEeCCCCEEEE-CCeEEEEEECCCCCcccEEEEEecCCcCCc
Confidence 00 01345667888888 5678877766 999999999998766 7
Q ss_pred -eEEEecCCCC
Q 012717 241 -NIAYISGSNF 250 (458)
Q Consensus 241 -~i~ytgD~~~ 250 (458)
+++|+||...
T Consensus 173 ~~~lftGD~l~ 183 (311)
T 2p18_A 173 GVALFTGDTMF 183 (311)
T ss_dssp CEEEEEETTEE
T ss_pred CCEEEEcCccc
Confidence 9999999853
No 54
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=98.93 E-value=1.4e-09 Score=104.86 Aligned_cols=126 Identities=10% Similarity=0.074 Sum_probs=88.9
Q ss_pred CEEEEecCCCCcCCCceEEEEE-CCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccC
Q 012717 1 MKFTCLCQGGGFNFPPCHILNV-SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~-~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 79 (458)
|+++.+...+ +.+|||++. ++..+|+|+|.... +. ..+.
T Consensus 8 m~i~~i~~~~---~n~~yli~~~~~~~vlID~G~~~~-i~--------------------------------~~l~---- 47 (258)
T 2qed_A 8 MNLNSIPAFQ---DNYIWVLTNDEGRCVIVDPGEAAP-VL--------------------------------KAIA---- 47 (258)
T ss_dssp CEEEEEEETT---TEEEEEEECTTSEEEEECCSCHHH-HH--------------------------------HHHH----
T ss_pred cEEEEecccC---ceEEEEEEECCCcEEEEeCCCcHH-HH--------------------------------HHHH----
Confidence 7888888553 456999998 68899999994310 00 1110
Q ss_pred cccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012717 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG 157 (458)
Q Consensus 80 ~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~ 157 (458)
. ... +|++|++||. ||+||++.|.+.++ ..+||+++.+. + .
T Consensus 48 ---~------~g~-~i~~Il~TH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~------------~-~------------- 90 (258)
T 2qed_A 48 ---E------HKW-MPEAIFLTHHHHDHVGGVKELLQHFP-QMTVYGPAETQ------------D-K------------- 90 (258)
T ss_dssp ---H------HTC-EEEEEECCSCCHHHHTTHHHHHHHCT-TCEEEECGGGG------------G-G-------------
T ss_pred ---H------cCC-CCCEEEeCCCCccccCCHHHHHHHCC-CCEEEeccccc------------C-C-------------
Confidence 0 122 7999999999 99999999987543 48999986541 0 0
Q ss_pred ccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEEE
Q 012717 158 PQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIIS 236 (458)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I~ 236 (458)
...+.+.-++.+++ |+.++++..+ ||..|++.+.
T Consensus 91 ------------------------------------------~~~~~~~~g~~~~~-g~~~~~vi~tPGHt~g~~~~~-- 125 (258)
T 2qed_A 91 ------------------------------------------GATHLVGDGDTIRV-LGEKFTLFATPGHTLGHVCYF-- 125 (258)
T ss_dssp ------------------------------------------TCSEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEE--
T ss_pred ------------------------------------------CCcEEeCCCCEEEE-CCcEEEEEECCCCCCCCeEEE--
Confidence 01234566778888 5677777655 9999999888
Q ss_pred eCCeeEEEecCCCC
Q 012717 237 GAKGNIAYISGSNF 250 (458)
Q Consensus 237 ~~~~~i~ytgD~~~ 250 (458)
..+++|+||...
T Consensus 126 --~~~~lftGD~l~ 137 (258)
T 2qed_A 126 --SRPYLFCGDTLF 137 (258)
T ss_dssp --ETTEEEEETTEE
T ss_pred --cCCEEEECCCCC
Confidence 468999999853
No 55
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=98.93 E-value=5.1e-10 Score=107.89 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=69.1
Q ss_pred CCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 012717 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (458)
+..+||+|++||. ||+|+++.|.+++. +.+||+++.+.+..+ +. ++..
T Consensus 76 ~~~~i~~IilTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~l~----~~----------~~~~--------------- 125 (262)
T 3hnn_A 76 NLKKLDYVILGHFSPNRIPTFKALLELAP-QITFVCSLPAAGDLR----AA----------FPDD--------------- 125 (262)
T ss_dssp CGGGEEEEECSSCCGGGHHHHHHHHHHCT-TCEEEECHHHHHHHH----HH----------SSSS---------------
T ss_pred ChhhCCEEEECCCCcchhchHHHHHHHCC-CCEEEECHHHHHHHH----HH----------hCCC---------------
Confidence 5678999999999 99999999987532 689999998876422 11 0000
Q ss_pred chhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC--CCCCCceEEEEEeCCeeEEEec
Q 012717 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a--GH~lGsa~~~I~~~~~~i~ytg 246 (458)
. ...+.++-++.+++.++.++++..+ .|..|+..+.+ .+.+++|+|
T Consensus 126 ------------------~------------~~~~~~~~g~~l~lg~~~~~~~i~tpg~Ht~g~~~~~~--~~~~~lfsG 173 (262)
T 3hnn_A 126 ------------------N------------LNILPMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYD--VQTQILYTD 173 (262)
T ss_dssp ------------------C------------CEEEECCSSCEEECSTTCEEEEEECCCSSCTTCEEEEE--TTTTEEEEE
T ss_pred ------------------C------------CceEEeCCCCEEEcCCCcEEEEEECCCCCCCCeeEEEe--CCCCEEEEe
Confidence 0 1356778889999942555555443 38999987665 467899999
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|.-
T Consensus 174 D~~ 176 (262)
T 3hnn_A 174 KIF 176 (262)
T ss_dssp TTT
T ss_pred ecC
Confidence 983
No 56
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=98.91 E-value=2.4e-09 Score=110.00 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=92.5
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
+-+||||+.++..+|+|.|..... ..+..+ .+ ..+++.
T Consensus 51 syNsYLI~~~~~~vLIDtg~~~~~----------------------------------~~~l~~------l~--~~i~~~ 88 (410)
T 4dik_A 51 SYNAYLVKLNGANVLIDGWKGNYA----------------------------------KEFIDA------LS--KIVDPK 88 (410)
T ss_dssp EEEEEEEECSSCEEEECCCCGGGH----------------------------------HHHHHH------HT--TTSCGG
T ss_pred EEEEEEEEECCeEEEEeCCCcchH----------------------------------HHHHHH------HH--HhcCcc
Confidence 457999999999999999964210 011100 00 115678
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+||.|++||. ||+|+++.|.++++-+.+||+++.++++. +... +.
T Consensus 89 ~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l----~~~~----------~~------------------- 135 (410)
T 4dik_A 89 EITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLL----EGFY----------GI------------------- 135 (410)
T ss_dssp GCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHH----HHHH----------CC-------------------
T ss_pred cCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHH----Hhhc----------Cc-------------------
Confidence 9999999999 99999999998766678999999887643 2211 00
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-C-CCCCceEEEEEeCCeeEEEecCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-G-LDIGACNWIISGAKGNIAYISGSN 249 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-G-H~lGsa~~~I~~~~~~i~ytgD~~ 249 (458)
..++.++-++.+++ |+.++++..+ | |..|+..+.. .+++|+||..
T Consensus 136 ----------------------------~~~~~v~dGd~l~l-G~~~L~~i~tPg~H~p~~~~~y~----~~iLFsgD~f 182 (410)
T 4dik_A 136 ----------------------------KDVTVVKDGEEREI-GGKKFKFVMTPWLHWPDTMVTYL----DGILFSCDVG 182 (410)
T ss_dssp ----------------------------CCEEECCTTCEEEE-TTEEEEEEECTTSSSTTCEEEEE----TTEEEEETTT
T ss_pred ----------------------------cceeEecCCCEEee-cceEEEEecCCCCCCCCCeeEEe----CCceEccccc
Confidence 13567788999999 5677776665 4 8899887764 4799999975
Q ss_pred C
Q 012717 250 F 250 (458)
Q Consensus 250 ~ 250 (458)
+
T Consensus 183 g 183 (410)
T 4dik_A 183 G 183 (410)
T ss_dssp C
T ss_pred c
Confidence 4
No 57
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=98.90 E-value=3.4e-09 Score=101.29 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=91.3
Q ss_pred CEEEEecCCCCcCCCceEEEEEC----CEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVS----GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~----~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (458)
|+|..+.... .+.+||||+.+ +..||+|+|..... .+
T Consensus 3 m~~~~~~~~~--~~~~~yli~~~~~~~~~~ilID~g~~~~~-----------------------------------~~-- 43 (245)
T 2gcu_A 3 LLFRQLFENE--SSTFTYLLADVSHPDKPALLIDPVDKTVD-----------------------------------RD-- 43 (245)
T ss_dssp EEEEEEEETT--TTEEEEEEEETTSTTCEEEEESCBGGGHH-----------------------------------HH--
T ss_pred cEEEEeecCC--CceEEEEEEcCCCCCCcEEEEeCCCchHH-----------------------------------HH--
Confidence 5566665542 36789999984 68999999975210 01
Q ss_pred ccCcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012717 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (458)
Q Consensus 77 ~~p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~ 154 (458)
.++.+. .. .+|++||+||. ||+||++.|.+.+ ...+||+++.+..
T Consensus 44 -~~~l~~------~g-~~i~~Il~TH~H~DH~gg~~~l~~~~-~~~~v~~~~~~~~------------------------ 90 (245)
T 2gcu_A 44 -LKLIDE------LG-LKLIYAMNTHVHADHVTGTGLLKTKL-PGVKSVISKASGS------------------------ 90 (245)
T ss_dssp -HHHHHH------HT-CEEEEEECSSCCSSSCBSHHHHHHHS-TTCEEEEEGGGCC------------------------
T ss_pred -HHHHHH------CC-CeeeEEEeCCCChhhhhhHHHHHHhC-CCCeEEecccccc------------------------
Confidence 001000 11 25999999999 9999999998632 3589999865310
Q ss_pred CCCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEE
Q 012717 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNW 233 (458)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~ 233 (458)
...+.+.-++.+++ +++++++..+ ||..|++.+
T Consensus 91 ---------------------------------------------~~~~~~~~g~~~~~-g~~~i~v~~tpGHt~g~~~~ 124 (245)
T 2gcu_A 91 ---------------------------------------------KADLFLEPGDKVSI-GDIYLEVRATPGHTAGCVTY 124 (245)
T ss_dssp ---------------------------------------------CCSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEE
T ss_pred ---------------------------------------------cCCEEcCCCCEEEE-CCEEEEEEECCCCCCCCEEE
Confidence 01235566778888 5677777655 999999999
Q ss_pred EEEeCC----eeEEEecCCCC
Q 012717 234 IISGAK----GNIAYISGSNF 250 (458)
Q Consensus 234 ~I~~~~----~~i~ytgD~~~ 250 (458)
.++..+ .+++|+||...
T Consensus 125 ~~~~~~~~~~~~~lftGD~~~ 145 (245)
T 2gcu_A 125 VTGEGADQPQPRMAFTGDAVL 145 (245)
T ss_dssp EECCSTTSCSSCEEEEETTSB
T ss_pred EECCccccccccEEEECCccc
Confidence 998652 48999999853
No 58
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=98.86 E-value=3.6e-09 Score=102.07 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=88.8
Q ss_pred CEEEEecCCCCcCCCceEEEEEC--CEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccccc
Q 012717 1 MKFTCLCQGGGFNFPPCHILNVS--GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe~~--~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (458)
|+++++-.++ +.+||||..+ +..+|+|+|.. ..+ ...+.
T Consensus 1 m~i~~i~~~~---~n~~yli~~~~~~~~vlID~G~~-~~i--------------------------------~~~l~--- 41 (260)
T 1qh5_A 1 MKVEVLPALT---DNYMYLVIDDETKEAAIVDPVQP-QKV--------------------------------VDAAR--- 41 (260)
T ss_dssp CEEEEEEETT---TEEEEEEEETTTTEEEEESCSSH-HHH--------------------------------HHHHH---
T ss_pred CEEEEEEecC---ceEEEEEEECCCCEEEEEcCCCH-HHH--------------------------------HHHHH---
Confidence 7888776543 4569999985 68999999932 100 01110
Q ss_pred CcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012717 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (458)
Q Consensus 79 p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (458)
. .. -+|++|++||. ||+||++.|.+.++ ..+||+++....
T Consensus 42 ----~------~g-~~i~~IllTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~-------------------------- 83 (260)
T 1qh5_A 42 ----K------HG-VKLTTVLTTHHHWDHAGGNEKLVKLES-GLKVYGGDDRIG-------------------------- 83 (260)
T ss_dssp ----H------HT-CEEEEEECCCSSHHHHTTHHHHHHHST-TCEEEESCTTST--------------------------
T ss_pred ----H------cC-CCccEEEeCCCCccccCCHHHHHHHCC-CCEEEECcccCC--------------------------
Confidence 0 11 25999999999 99999999987532 589999752100
Q ss_pred CccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEE
Q 012717 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII 235 (458)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I 235 (458)
.....+.-++.+++ |++++++..+ ||..|++.+.+
T Consensus 84 -------------------------------------------~~~~~~~~g~~~~~-g~~~~~vi~tPGHt~g~~~~~~ 119 (260)
T 1qh5_A 84 -------------------------------------------ALTHKITHLSTLQV-GSLNVKCLATPCHTSGHICYFV 119 (260)
T ss_dssp -------------------------------------------TCSEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEEE
T ss_pred -------------------------------------------CCCEEeCCCCEEEE-CCEEEEEEECCCCCCCCEEEEE
Confidence 01234566778888 5677776554 99999999998
Q ss_pred -Ee--CCeeEEEecCCCC
Q 012717 236 -SG--AKGNIAYISGSNF 250 (458)
Q Consensus 236 -~~--~~~~i~ytgD~~~ 250 (458)
+. .+.+++|+||+..
T Consensus 120 ~~~~~~~~~~lftGD~l~ 137 (260)
T 1qh5_A 120 SKPGGSEPPAVFTGDTLF 137 (260)
T ss_dssp ECSSSSSCCEEEEETTEE
T ss_pred eccCCCCCCEEEEcCccc
Confidence 54 4679999999853
No 59
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.85 E-value=1.3e-09 Score=114.09 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=96.6
Q ss_pred CEEEEecCCCCcCCCceEEE--EECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccccc
Q 012717 1 MKFTCLCQGGGFNFPPCHIL--NVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LL--e~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (458)
|++..+..+. .+.+|||| +.++..||+|+|.....+. ..+.
T Consensus 4 m~i~~~~~~~--~~~n~yli~~~~~~~~ilID~g~~~~~~~--------------------------------~~l~--- 46 (474)
T 3tp9_A 4 MYLRRFYDEG--LAHASYLVGCQETGEACVIDPARDVEPYL--------------------------------LTAK--- 46 (474)
T ss_dssp EEEEEEEETT--TTEEEEEEEETTTCEEEEESCCSCCHHHH--------------------------------HHHH---
T ss_pred eEEEEEecCC--ceeEEEEEEECCCCEEEEEcCCCChHHHH--------------------------------HHHH---
Confidence 6666665442 36889999 7789999999997632110 0110
Q ss_pred CcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012717 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (458)
Q Consensus 79 p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (458)
. . ..+|++||+||. ||+|+++.|.+. +..+||+++.+...
T Consensus 47 ----~------~-~~~i~~Il~TH~H~DH~gg~~~l~~~--~~~~i~~~~~~~~~------------------------- 88 (474)
T 3tp9_A 47 ----R------E-GLRIVAALETHIHADFVSGAREMADR--AGAAICVSDEGPPE------------------------- 88 (474)
T ss_dssp ----H------H-TCEEEEEECSSCCSSSCCCHHHHHHH--HCCEEEEECCSCGG-------------------------
T ss_pred ----H------c-CCeeEEEEcCcCchhhhCCHHHHHHH--HCCcEEEcCcchhh-------------------------
Confidence 0 1 126999999999 999999999875 46899998764220
Q ss_pred CccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEE
Q 012717 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII 235 (458)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I 235 (458)
|... +. + -...+.+.-++.+.+ |++++++... ||..|++.+.+
T Consensus 89 ---~~~~-----~~-------------------~--------~~~~~~~~~g~~~~~-g~~~i~~i~tPGHt~g~~~~~~ 132 (474)
T 3tp9_A 89 ---WKSE-----YV-------------------K--------AYPHRLLKDGDELHF-GNVRIVVMHTPGHTPEHVSYLL 132 (474)
T ss_dssp ---GCCG-----GG-------------------G--------GSSEEEECTTCEEEE-TTEEEEEEECCSSSSSCEEEEE
T ss_pred ---hccc-----cc-------------------c--------cccceECCCCCEEEE-CCEEEEEEECCCCCCCCEEEEE
Confidence 0000 00 0 012356778889999 5788877655 89999999999
Q ss_pred EeCCe-----eEEEecCCCC
Q 012717 236 SGAKG-----NIAYISGSNF 250 (458)
Q Consensus 236 ~~~~~-----~i~ytgD~~~ 250 (458)
...+. +++|+||+..
T Consensus 133 ~~~~~~~~~~~~lftGD~lf 152 (474)
T 3tp9_A 133 YDGKTSPDVPMALFSGDFVF 152 (474)
T ss_dssp EETTTEEEEEEEEEEETSEE
T ss_pred ecCCCCCCCceEEEeCCccc
Confidence 87755 8999999863
No 60
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=98.84 E-value=8.4e-10 Score=102.00 Aligned_cols=119 Identities=9% Similarity=-0.135 Sum_probs=82.8
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
.+.+||||+.++..+|+|||.....+ ...+. ..
T Consensus 22 ~~~n~~li~~~~~~iliD~g~~~~~~--------------------------------~~~l~---------------~~ 54 (201)
T 2p97_A 22 IDFNGFAWIRPEGNILIDPVALSNHD--------------------------------WKHLE---------------SL 54 (201)
T ss_dssp EEEEEEEECCTTCCEEESCCCCCHHH--------------------------------HHHHH---------------HT
T ss_pred cceeEEEEEeCCeeEEEECCCCcHHH--------------------------------HHHHH---------------hc
Confidence 46889999998899999999532110 01110 12
Q ss_pred CcccEEEecCCCCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhh
Q 012717 93 SFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172 (458)
Q Consensus 93 ~~IDaVlISHaDH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (458)
.+|++|++||.||+|+++.+.+.+ ..+||+++.+.+.. . .
T Consensus 55 g~i~~ii~TH~DH~gg~~~~~~~~--~a~v~~~~~~~~~~----~-------------~--------------------- 94 (201)
T 2p97_A 55 GGVVWIVLTNSDHVRSAKEIADQT--YTKIAGPVAEKENF----P-------------I--------------------- 94 (201)
T ss_dssp TCCSEEECSSGGGCTTHHHHHHHS--CCEEEEEGGGTTSC----S-------------S---------------------
T ss_pred CCCCEEEECCchhhhhHHHHHHhc--CCEEEEcHhHhhhh----c-------------c---------------------
Confidence 389999999999999999998754 58999997653310 0 0
Q ss_pred hhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCCCC
Q 012717 173 LRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 250 (458)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~~ 250 (458)
+ ....+.-++.+ .+++++...++||..|++.+.++ + +++|+||...
T Consensus 95 -----------------~----------~~~~~~~g~~~--~~~~~~~~~p~gHt~g~~~~~~~--~-~~lf~GD~~~ 140 (201)
T 2p97_A 95 -----------------Y----------CDRWLSDGDEL--VPGLKVMELQGSKTPGELALLLE--E-TTLITGDLVR 140 (201)
T ss_dssp -----------------C----------CSEEECTTCBS--STTEEEEEECSSSSTTEEEEEET--T-TEEEECSSEE
T ss_pred -----------------c----------CceecCCCCEE--cceEEEEECCCCCCCCcEEEEEc--C-CEEEECcccc
Confidence 0 01223333332 23688888889999999999887 3 8999999753
No 61
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=98.79 E-value=6.1e-09 Score=106.67 Aligned_cols=96 Identities=11% Similarity=-0.077 Sum_probs=67.8
Q ss_pred CCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 012717 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (458)
Q Consensus 91 d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (458)
+..+||+|++||. ||+|+++.|.+.+. ..+||+++.+.+.. .+.. +..
T Consensus 74 ~~~~i~~ii~TH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~~----~~~~----------~~~--------------- 123 (414)
T 2q9u_A 74 PLDKIKYVVMNHAEGDHASSLKDHYHKFT-NATFVCTKKCQEHL----KILY----------GME--------------- 123 (414)
T ss_dssp CGGGCCEEECSCCSGGGTTTHHHHGGGST-TCEEEECHHHHHHH----HHHH----------CCT---------------
T ss_pred CcccCCEEEeCCCCcchhcCHHHHHHHCC-CCEEEECHHHHHHH----HHHh----------CCC---------------
Confidence 4678999999999 99999999987532 68999999987632 2111 000
Q ss_pred chhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEe--cCCCCCCceEEEEEeCCeeEEEec
Q 012717 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYIS 246 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~--~aGH~lGsa~~~I~~~~~~i~ytg 246 (458)
. ..++.+..++.+++ |+.++++. +.||..|+..+.+ .+.+++|+|
T Consensus 124 ------------------~------------~~~~~~~~g~~~~l-g~~~~~~~~~p~gHt~~~~~~~~--~~~~~lf~G 170 (414)
T 2q9u_A 124 ------------------K------------ATWLIVDDKYTLKI-GKRTLKFIPVPLLHWPDSTFTYC--PEDKILFSN 170 (414)
T ss_dssp ------------------T------------CCEEECCTTCCEEC-SSCEEEEEECTTSSSTTCEEEEE--TTTTEEEEE
T ss_pred ------------------C------------CeeEEeCCCCEEEE-CCeEEEEEeCCCCCCCCceEEEE--CCCeEEEEc
Confidence 0 02456677888888 45555544 5579999987554 467899999
Q ss_pred CCC
Q 012717 247 GSN 249 (458)
Q Consensus 247 D~~ 249 (458)
|..
T Consensus 171 D~~ 173 (414)
T 2q9u_A 171 DGF 173 (414)
T ss_dssp TTT
T ss_pred ccc
Confidence 964
No 62
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=98.78 E-value=5.4e-09 Score=100.50 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=64.7
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
+|++|++||. ||+||++.|.+.+ ..+||+++.+.+. ++
T Consensus 46 ~i~~Il~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~-------------------------------------~~- 85 (254)
T 1xm8_A 46 NLTYILNTHHHYDHTGGNLELKDRY--GAKVIGSAMDKDR-------------------------------------IP- 85 (254)
T ss_dssp CCCEEECSSCCHHHHTTHHHHHHHH--CCEEEEEGGGGGG-------------------------------------ST-
T ss_pred CccEEEECCCCCcccccHHHHHHHc--CCeEEEchhhhhc-------------------------------------CC-
Confidence 6999999999 9999999998754 5899998754220 00
Q ss_pred hhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEec-CCCCCCceEEEEEeCCeeEEEecCCCC
Q 012717 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 250 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~-aGH~lGsa~~~I~~~~~~i~ytgD~~~ 250 (458)
.....+.-++.+.+ |+.++++.. .||..|++.+.++ +.+++|+||...
T Consensus 86 ----------------------------~~~~~~~~g~~~~l-g~~~~~vi~tPGHt~g~~~~~~~--~~~~lftGD~l~ 134 (254)
T 1xm8_A 86 ----------------------------GIDMALKDGDKWMF-AGHEVHVMDTPGHTKGHISLYFP--GSRAIFTGDTMF 134 (254)
T ss_dssp ----------------------------TEEEEECTTCEEEE-TTEEEEEEECCSSSSSCEEEEEG--GGTEEEEETTEE
T ss_pred ----------------------------CCceeeCCCCEEEE-CCEEEEEEECCCCCCCcEEEEEC--CCCEEEEcCccc
Confidence 01235566788888 567777665 4999999999985 468999999853
No 63
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=98.76 E-value=8e-10 Score=107.75 Aligned_cols=133 Identities=9% Similarity=-0.012 Sum_probs=88.7
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
+.+||+|+.++..||+|||..... .. ...+. .... -...
T Consensus 31 ~~n~~li~~~~~~ilID~G~~~~~----------------------~~---------~~~l~---~~l~-------~~~~ 69 (289)
T 4ad9_A 31 GTNTYLVGTGPRRILIDTGEPAIP----------------------EY---------ISCLK---QALT-------EFNT 69 (289)
T ss_dssp CCEEEEECSSSSEEEECCCSTTCH----------------------HH---------HHHHH---HHHH-------HTTC
T ss_pred ceEEEEEecCCceEEEeCCCCCCh----------------------HH---------HHHHH---HHHH-------HcCC
Confidence 578999999899999999975310 00 01110 0000 0123
Q ss_pred cccEEEecCC--CCcchhhhhhcccC--CcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEG--FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~g--f~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (458)
+|++|++||. ||+|+++.|.+.++ -..+||+...+... . .+.
T Consensus 70 ~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~~~~---------------------~-----~~~-------- 115 (289)
T 4ad9_A 70 AIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQR---------------------E-----EII-------- 115 (289)
T ss_dssp CEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCSSCC---------------------C-----CCB--------
T ss_pred CceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCCcch---------------------h-----hhc--------
Confidence 7999999999 99999999988642 25678876432100 0 000
Q ss_pred hhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEEEeCCeeEEEecCC
Q 012717 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGS 248 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I~~~~~~i~ytgD~ 248 (458)
. . .-..++.+..++.+++ ++.+++++.+ ||..|++++.+. ..+++|+||.
T Consensus 116 ------------~----~----------~~~~~~~~~~g~~~~~-gg~~~~~~~~pGHt~~~~~~~~~--~~~~lftGD~ 166 (289)
T 4ad9_A 116 ------------G----N----------GEQQYVYLKDGDVIKT-EGATLRVLYTPGHTDDHMALLLE--EENAIFSGDC 166 (289)
T ss_dssp ------------T----T----------TTBCEEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEEET--TTTEEEEETS
T ss_pred ------------c----C----------CCCceEEcCCCCEEEe-CCeEEEEEECCCCCCCCEEEEEc--CCCEEEEecc
Confidence 0 0 0024577888999999 5788888877 999999999984 5679999997
Q ss_pred CC
Q 012717 249 NF 250 (458)
Q Consensus 249 ~~ 250 (458)
..
T Consensus 167 ~~ 168 (289)
T 4ad9_A 167 IL 168 (289)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 64
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=98.72 E-value=1.3e-08 Score=98.10 Aligned_cols=133 Identities=8% Similarity=-0.021 Sum_probs=86.2
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
.+.+|||++.++..||+|||..... ...+.. ..+. ...
T Consensus 66 ~~~n~~li~~~~~~iLID~G~~~~~---------------------------------~~~l~~---~l~~------~~g 103 (265)
T 2y8b_A 66 YSSNGLIVRDADELLLIDTAWGAKN---------------------------------TVALLA---EIEK------QIG 103 (265)
T ss_dssp EEEEEEEEEETTEEEEESCCSSHHH---------------------------------HHHHHH---HHHH------HTC
T ss_pred ccceEEEEEECCeEEEEeCCCCHHH---------------------------------HHHHHH---HHHH------hcC
Confidence 3578999999999999999986321 001100 0000 101
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (458)
.+|++|++||. ||+|+++.+.+ . +.+||+++.+.+..+ +. ... +.
T Consensus 104 ~~i~~VilTH~H~DH~gg~~~~~~-~--~a~v~~~~~~~~~~~----~~-----------~~~------~~--------- 150 (265)
T 2y8b_A 104 LPVTRSISTHFHDDRVGGVDVLRA-A--GVATYTSPLTRQLAE----AA-----------GNE------VP--------- 150 (265)
T ss_dssp SCEEEEECSSSSHHHHTTHHHHHH-T--TCEEEECHHHHHHHH----HT-----------TCC------CC---------
T ss_pred CCeEEEEeCCCChhhcCCHHHHhh-C--CCeEEECHHHHHHHH----hc-----------ccc------cc---------
Confidence 27999999999 99999998876 2 689999998876421 10 000 00
Q ss_pred hhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeCCeeEEEecCCCC
Q 012717 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 250 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~~~~i~ytgD~~~ 250 (458)
. .++ .. ...-++.+.+ +++++.....||..|++.+.++ +++++|+||...
T Consensus 151 ----------------~-~~~--------~~--~~~~~~~~~~-g~~~v~~~~pGHt~g~~~~~~~--~~~~lf~GD~~~ 200 (265)
T 2y8b_A 151 ----------------A-HSL--------KA--LSSSGDVVRF-GPVEVFYPGAAHSGDNLVVYVP--AVRVLFGGCAVH 200 (265)
T ss_dssp ----------------S-EEC--------SS--CSSTTEEEEE-TTEEEEECCSSSSTTCCEEEET--TTTEEEEETTSC
T ss_pred ----------------c-ccc--------cc--cCCCCcEEee-cCEEEEecCCCCCCCCEEEEec--CCCEEEEccccc
Confidence 0 000 00 0133455666 5688876778999999999875 468999999754
No 65
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=98.70 E-value=5.9e-09 Score=98.02 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=52.8
Q ss_pred CCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCC
Q 012717 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (458)
Q Consensus 13 v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~ 92 (458)
.+.+|||++.++..||+|||..... ...+. ...+. ..
T Consensus 31 ~~~n~~li~~~~~~iliD~g~~~~~---------------------------------~~~~~---~~l~~------~g- 67 (228)
T 1jjt_A 31 VPKHGLVVLVNAEAYLIDTPFTAKD---------------------------------TEKLV---TWFVE------RG- 67 (228)
T ss_dssp EEEEEEEEEETTEEEEESCCSSHHH---------------------------------HHHHH---HHHHT------TT-
T ss_pred ccceEEEEEECCcEEEEeCCCChhh---------------------------------HHHHH---HHHHH------cC-
Confidence 4568999999999999999986321 00110 01000 11
Q ss_pred CcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHH
Q 012717 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARI 131 (458)
Q Consensus 93 ~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l 131 (458)
.+|++|++||. ||+|+++.+.+ +..+||+++.+.++
T Consensus 68 ~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~ 105 (228)
T 1jjt_A 68 YKIKGSISSHFHSDSTGGIEWLNS---RSIPTYASELTNEL 105 (228)
T ss_dssp CEEEEEECSSSSHHHHTTHHHHHH---TTCCEEEEHHHHHH
T ss_pred CCeeEEEeCCCChhhhccHHHHHh---CCCEEEEChHHHHH
Confidence 27999999999 99999999876 36899999988764
No 66
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=98.69 E-value=2.5e-08 Score=104.12 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=94.3
Q ss_pred CEEEEecCCCCcCCCceEEEE--ECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCcccccccc
Q 012717 1 MKFTCLCQGGGFNFPPCHILN--VSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (458)
Q Consensus 1 mkl~~Lg~~~~~v~~sc~LLe--~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (458)
|++..+-.+ ..+.+||||. .++..||+|||.....+. ..+.
T Consensus 25 m~i~~~~~~--~~~~nsyli~~~~~~~~vlID~g~~~~~~~--------------------------------~~l~--- 67 (466)
T 3r2u_A 25 MFFKQFYDK--HLSQASYLIGCQKTGEAMIIDPIRDLSSYI--------------------------------RVAD--- 67 (466)
T ss_dssp EEEEEEEET--TTTEEEEEEEETTTCEEEEESCCSCCHHHH--------------------------------HHHH---
T ss_pred eEEEEEecC--CccceEEEEEeCCCCEEEEEcCCCCHHHHH--------------------------------HHHH---
Confidence 555555433 2367899994 578999999996532100 0010
Q ss_pred CcccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012717 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (458)
Q Consensus 79 p~~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (458)
-...+|++||+||. ||+|+++.|.+.+ ..+||+++.+.+
T Consensus 68 -----------~~g~~i~~Il~TH~H~DH~gg~~~l~~~~--~a~v~~~~~~~~-------------------------- 108 (466)
T 3r2u_A 68 -----------EEGLTITHAAETHIHADFASGIRDVAIKL--NANIYVSGESDD-------------------------- 108 (466)
T ss_dssp -----------HHTCEEEEEECSSCCSSSCCCHHHHHHHH--CCEEEEECCSCT--------------------------
T ss_pred -----------HCCCeeeEEEECCCChhhhccHHHHHHhh--CCeEEECcchhh--------------------------
Confidence 01236999999999 9999999998754 689999975311
Q ss_pred CccchhhhHhhhchhhhhhhhcCCCCCCCCCCCchHHHHHHHHhcceeeCCCCEEEeCCcEEEEEecC-CCCCCceEEEE
Q 012717 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII 235 (458)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~a-GH~lGsa~~~I 235 (458)
.|.. .+.+ ...+.+.-++.+++ |++++++..+ ||..|++.+.+
T Consensus 109 --~~~~------------------------~~~~---------~~~~~~~~g~~l~~-g~~~l~vi~tPGHT~g~~~~~~ 152 (466)
T 3r2u_A 109 --TLGY------------------------KNMP---------NHTHFVQHNDDIYV-GNIKLKVLHTPGHTPESISFLL 152 (466)
T ss_dssp --TTSC------------------------CSCC---------TTCEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEE
T ss_pred --hhcc------------------------ccCC---------CCCEEeCCCCEEEE-CCEEEEEEECCCCCCCCEEEEE
Confidence 0100 0000 13567788999999 5788887764 89999999999
Q ss_pred EeC-----CeeEEEecCCCC
Q 012717 236 SGA-----KGNIAYISGSNF 250 (458)
Q Consensus 236 ~~~-----~~~i~ytgD~~~ 250 (458)
... +.+++|+||+..
T Consensus 153 ~~~~~~~~~~~~lftGD~lf 172 (466)
T 3r2u_A 153 TDEGAGAQVPMGLFSGDFIF 172 (466)
T ss_dssp ECGGGTCCSCCEEEEETTBC
T ss_pred cCCCccCCCceEEEECCccc
Confidence 863 356999999864
No 67
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=98.37 E-value=3.1e-07 Score=89.51 Aligned_cols=71 Identities=15% Similarity=0.072 Sum_probs=53.6
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
.++|++|+.++.+||+|||..... ..++.. ..+++.
T Consensus 32 ~g~s~li~~~~~~iLiD~G~~~~~---------------------------------~~~l~~-----------~g~~~~ 67 (284)
T 2p4z_A 32 HGLSLLLKKGNKEIVVDTGQSENF---------------------------------IKNCGL-----------MGIDVG 67 (284)
T ss_dssp SSCEEEEEETTEEEEECCCSSTHH---------------------------------HHHHHH-----------TTCCGG
T ss_pred CEEEEEEEECCeEEEEeCCCCHHH---------------------------------HHHHHH-----------cCCChh
Confidence 588999999999999999985310 011100 114677
Q ss_pred cccEEEecCC--CCcchhhhhhcccCCcceEEEehHHH
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAA 129 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~ 129 (458)
+||+|++||. ||+|+++.+.+.+ -+.+||+++.+.
T Consensus 68 ~i~~v~lTH~H~DH~ggl~~~~~~~-~~~~v~~~~~~~ 104 (284)
T 2p4z_A 68 RIKKVVLTHGHYDHIGGLKGLLERN-PEVKIYTHKEIL 104 (284)
T ss_dssp GCCEEECCCSCHHHHTTHHHHHHHC-TTCEEEEEGGGG
T ss_pred hCCEEEECCCCchhhccHHHHHHHc-CCCceecCHHHH
Confidence 8999999999 9999999987642 268999998774
No 68
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.26 E-value=4.3e-07 Score=87.74 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=53.9
Q ss_pred cCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccC
Q 012717 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (458)
Q Consensus 12 ~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d 91 (458)
.+..+||++..++..||+|+|+.... ...+.+ +.+. ..
T Consensus 72 ~~~~N~ylv~~~~~~ilIDtg~~~~~---------------------------------~~~l~~---~i~~------~~ 109 (270)
T 4eyb_A 72 AVASNGLIVRDGGRVLVVDTAWTDDQ---------------------------------TAQILN---WIKQ------EI 109 (270)
T ss_dssp EEEEEEEEEEETTEEEEESCCSSHHH---------------------------------HHHHHH---HHHH------HT
T ss_pred ccceEEEEEEECCEEEEEeCCCCHHH---------------------------------HHHHHH---HHHH------hc
Confidence 34568999999999999999986431 011110 0000 11
Q ss_pred CCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHH
Q 012717 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARI 131 (458)
Q Consensus 92 ~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l 131 (458)
-..|++|++||. ||+||++.|.+. ..|||+++.+.++
T Consensus 110 ~~~I~~Ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~ 148 (270)
T 4eyb_A 110 NLPVALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQL 148 (270)
T ss_dssp CCCEEEEEECSSSHHHHTTHHHHHHT---TCEEEEEHHHHHH
T ss_pred CCceEEEEeCCCChhhcCcHHHHHHC---CCeEEECHHHHHH
Confidence 246999999999 999999999763 5899999988664
No 69
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=98.03 E-value=1.7e-05 Score=86.13 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=54.6
Q ss_pred CCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCC
Q 012717 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (458)
Q Consensus 14 ~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~ 93 (458)
..+||||+.++..||+|+|..... . ..+. .... ..++..
T Consensus 122 ~~N~ylI~~~~g~iLIDtG~~~~~-----------------------a----------~~~l---~~i~-----~~~~~~ 160 (658)
T 2cfu_A 122 LANITFIRGDSGWIVVDTLTTPAT-----------------------A----------RAAY---ELVS-----RELGER 160 (658)
T ss_dssp SSCEEEEECSSSEEEECCCSSHHH-----------------------H----------HHHH---HHHH-----HHHCCC
T ss_pred CeEEEEEEECCEEEEEECCCCHHH-----------------------H----------HHHH---HHHH-----hhCCCC
Confidence 478999998889999999987421 0 0000 0000 002356
Q ss_pred cccEEEecCC--CCcchhhhhhccc---CCcceEEEehHHHHHH
Q 012717 94 FIDVVLISSP--MGMLGLPFLTRME---GFSAKIYITEAAARIG 132 (458)
Q Consensus 94 ~IDaVlISHa--DH~g~LP~L~~~~---gf~g~Iy~T~pT~~l~ 132 (458)
+|++|++||. ||+||++.+.+.. ....+||+++.+.+..
T Consensus 161 ~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~~~ 204 (658)
T 2cfu_A 161 PIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAA 204 (658)
T ss_dssp CEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHHHH
T ss_pred CceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHHHH
Confidence 8999999999 9999999987520 2368999999987743
No 70
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=96.92 E-value=4.4e-06 Score=90.71 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=52.4
Q ss_pred CceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcccccccccccCCCc
Q 012717 15 PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSF 94 (458)
Q Consensus 15 ~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~d~~~ 94 (458)
.+||+|+.++..||+|||..... ...+.. ... ..++..+
T Consensus 133 ~N~~lI~~~~~~iLIDtG~~~~~---------------------------------a~~~l~---~i~-----~~~~~~~ 171 (668)
T 2yhe_A 133 ANMTIIEGDSGLVLIDTLTTAET---------------------------------ARAALD---LYF-----QHRPKKP 171 (668)
Confidence 68999998889999999987421 000000 000 0023467
Q ss_pred ccEEEecCC--CCcchhhhhhccc---CCcceEEEehHHHH
Q 012717 95 IDVVLISSP--MGMLGLPFLTRME---GFSAKIYITEAAAR 130 (458)
Q Consensus 95 IDaVlISHa--DH~g~LP~L~~~~---gf~g~Iy~T~pT~~ 130 (458)
|++|++||. ||+||++.+.+.. .+..|||+++.+.+
T Consensus 172 I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e 212 (668)
T 2yhe_A 172 IVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFME 212 (668)
Confidence 999999999 9999999998620 24689999998744
No 71
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=97.44 E-value=5.2e-05 Score=73.18 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=25.5
Q ss_pred cEEEecCC--CCcchhhhhhcccCCcceEEEehHHH
Q 012717 96 DVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAA 129 (458)
Q Consensus 96 DaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~ 129 (458)
|+|+|||. ||+|+++.+ ++.+||+++...
T Consensus 63 ~~IvlTH~H~DH~ggl~~l-----~~~~v~~~~~~~ 93 (267)
T 3h3e_A 63 KDVLISHGHYDHAGGLLYL-----SGKRVWLRKEAL 93 (267)
T ss_dssp SEEECSCSCHHHHGGGGGC-----CSCEEEEEGGGG
T ss_pred CEEEECCCChhhhCCHHHh-----cCCEEEECHHHH
Confidence 99999999 999999988 368999997553
No 72
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=29.51 E-value=17 Score=32.09 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHH
Q 012717 315 LAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353 (458)
Q Consensus 315 l~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~ 353 (458)
....++.+.+.|+.||+.++-+|..+...+++..|...+
T Consensus 118 ~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F 156 (191)
T 3dou_A 118 GQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNF 156 (191)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhc
Confidence 344667788899999999999999888888888776553
No 73
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=26.50 E-value=36 Score=29.20 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHH
Q 012717 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353 (458)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~ 353 (458)
..+++.+.+.|+.||.+++-++......+++..+...+
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f 162 (196)
T 2nyu_A 125 LTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEF 162 (196)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHE
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHh
Confidence 35667788899999999999887777778877776653
No 74
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=25.62 E-value=36 Score=28.12 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHh
Q 012717 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMEC 355 (458)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~ 355 (458)
.++++.+.+.|+.||.+++-.+......+++..+.+.|..
T Consensus 116 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
T 1ej0_A 116 ELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 155 (180)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhhh
Confidence 4577888899999999999888877888888887776443
No 75
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=23.63 E-value=29 Score=29.99 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHH
Q 012717 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 352 (458)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~ 352 (458)
.++++.+.+.|+.||.+++-++......+++..+...
T Consensus 134 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~ 170 (201)
T 2plw_A 134 LSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM 170 (201)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 3466778899999999999888766677777766543
No 76
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=21.14 E-value=1e+02 Score=23.63 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEecCc
Q 012717 312 MEKLAFICSCAIDSVKAGGSVLIPINR 338 (458)
Q Consensus 312 ~erl~~l~~~I~~tl~~gG~VLIPv~a 338 (458)
..-++.|.+.|.++|.+|+.|-||=|-
T Consensus 25 ~~~v~~~~~~i~~~L~~g~~V~l~gfG 51 (93)
T 3rhi_A 25 TVVVQTVVESITNTLAAGEKVQLIGFG 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTTE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCE
Confidence 345778999999999999999998663
No 77
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=20.77 E-value=1.3e+02 Score=26.31 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHH
Q 012717 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351 (458)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~ 351 (458)
.+++.+.+.|+.||.+++-++......+++..+.+
T Consensus 134 ~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 168 (213)
T 2fca_A 134 HFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE 168 (213)
T ss_dssp HHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 46788899999999999988776666666666654
Done!