Query 012718
Match_columns 458
No_of_seqs 218 out of 2633
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kmj_A Selenocysteine lyase; p 100.0 8.9E-48 3E-52 377.1 41.9 399 49-454 6-405 (406)
2 1t3i_A Probable cysteine desul 100.0 5.4E-47 1.8E-51 373.3 43.9 410 42-456 4-415 (420)
3 3cai_A Possible aminotransfera 100.0 1.2E-43 4.1E-48 348.0 38.3 372 49-449 14-404 (406)
4 4hvk_A Probable cysteine desul 100.0 5.9E-43 2E-47 339.9 38.8 364 68-456 1-375 (382)
5 3e9k_A Kynureninase; kynurenin 100.0 4.5E-44 1.5E-48 357.0 31.1 388 49-455 40-462 (465)
6 1elu_A L-cysteine/L-cystine C- 100.0 3.7E-42 1.3E-46 335.4 41.6 373 49-450 5-388 (390)
7 4eb5_A Probable cysteine desul 100.0 1.4E-42 4.9E-47 337.3 38.4 364 68-456 1-375 (382)
8 3lvm_A Cysteine desulfurase; s 100.0 3.6E-42 1.2E-46 339.3 41.6 369 65-456 20-401 (423)
9 1eg5_A Aminotransferase; PLP-d 100.0 1.5E-40 5.2E-45 323.2 43.9 363 69-456 3-378 (384)
10 3e77_A Phosphoserine aminotran 100.0 2.6E-42 9E-47 329.7 26.3 355 65-453 10-374 (377)
11 3vax_A Putative uncharacterize 100.0 2.4E-41 8.2E-46 330.9 33.4 360 65-453 18-399 (400)
12 2z9v_A Aspartate aminotransfer 100.0 2.1E-40 7E-45 323.4 33.0 364 54-455 2-372 (392)
13 3qm2_A Phosphoserine aminotran 100.0 3.6E-42 1.2E-46 330.8 19.6 346 68-453 27-384 (386)
14 2dr1_A PH1308 protein, 386AA l 100.0 5.2E-40 1.8E-44 319.8 33.7 370 44-455 3-380 (386)
15 3a9z_A Selenocysteine lyase; P 100.0 1.3E-39 4.5E-44 321.9 35.4 376 52-456 10-430 (432)
16 1qz9_A Kynureninase; kynurenin 100.0 4.3E-39 1.5E-43 316.6 36.1 374 46-454 14-402 (416)
17 2huf_A Alanine glyoxylate amin 100.0 4.7E-39 1.6E-43 313.9 33.3 369 52-456 9-385 (393)
18 1vjo_A Alanine--glyoxylate ami 100.0 1.8E-38 6.1E-43 309.8 34.0 369 45-451 17-392 (393)
19 3m5u_A Phosphoserine aminotran 100.0 2.1E-39 7.1E-44 308.8 25.5 345 68-453 5-359 (361)
20 3zrp_A Serine-pyruvate aminotr 100.0 1.4E-38 4.6E-43 309.5 31.4 349 72-455 6-364 (384)
21 3nnk_A Ureidoglycine-glyoxylat 100.0 3.1E-38 1.1E-42 309.9 33.7 361 67-455 12-391 (411)
22 1iug_A Putative aspartate amin 100.0 1.7E-38 5.8E-43 305.1 30.6 341 70-454 3-348 (352)
23 3isl_A Purine catabolism prote 100.0 2.7E-38 9.2E-43 310.8 29.6 353 74-455 17-391 (416)
24 3ffr_A Phosphoserine aminotran 100.0 4.6E-38 1.6E-42 303.2 29.4 353 70-451 6-361 (362)
25 2ch1_A 3-hydroxykynurenine tra 100.0 1.1E-37 3.7E-42 304.5 32.1 366 52-456 8-385 (396)
26 3kgw_A Alanine-glyoxylate amin 100.0 1.1E-37 3.8E-42 304.0 32.1 359 69-457 24-391 (393)
27 2yrr_A Aminotransferase, class 100.0 7.9E-38 2.7E-42 300.5 30.0 345 71-453 3-352 (353)
28 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 5.9E-38 2E-42 303.6 24.8 345 66-454 7-370 (371)
29 3f0h_A Aminotransferase; RER07 100.0 1.8E-36 6.3E-41 293.7 32.7 350 69-453 20-373 (376)
30 1m32_A 2-aminoethylphosphonate 100.0 1.1E-35 3.8E-40 286.9 34.3 351 68-454 5-365 (366)
31 2c0r_A PSAT, phosphoserine ami 100.0 3.8E-36 1.3E-40 290.0 29.9 348 67-454 3-361 (362)
32 2bkw_A Alanine-glyoxylate amin 100.0 3.6E-35 1.2E-39 285.4 32.7 357 70-454 7-384 (385)
33 1w23_A Phosphoserine aminotran 100.0 6.2E-36 2.1E-40 288.3 25.6 346 69-453 4-359 (360)
34 3ffh_A Histidinol-phosphate am 100.0 5.9E-35 2E-39 281.8 32.0 321 66-451 32-363 (363)
35 3f9t_A TDC, L-tyrosine decarbo 100.0 8E-35 2.8E-39 284.0 32.3 335 69-452 33-396 (397)
36 3euc_A Histidinol-phosphate am 100.0 7.7E-35 2.6E-39 281.4 31.3 323 66-452 30-366 (367)
37 3dyd_A Tyrosine aminotransfera 100.0 4.4E-35 1.5E-39 288.7 30.1 350 51-456 39-426 (427)
38 3ly1_A Putative histidinol-pho 100.0 1.6E-34 5.5E-39 277.7 32.2 322 65-453 15-351 (354)
39 3get_A Histidinol-phosphate am 100.0 1.2E-34 4E-39 279.9 30.0 319 66-451 30-364 (365)
40 3dzz_A Putative pyridoxal 5'-p 100.0 2.8E-34 9.7E-39 279.8 29.5 339 65-455 26-390 (391)
41 4dq6_A Putative pyridoxal phos 100.0 3.2E-34 1.1E-38 279.4 29.6 334 66-451 32-390 (391)
42 1gd9_A Aspartate aminotransfer 100.0 6.9E-34 2.3E-38 276.9 30.2 335 66-455 26-387 (389)
43 3a2b_A Serine palmitoyltransfe 100.0 3.6E-34 1.2E-38 279.8 27.6 336 66-455 43-393 (398)
44 3g0t_A Putative aminotransfera 100.0 1.2E-33 4.1E-38 279.5 31.4 352 65-453 43-436 (437)
45 3kax_A Aminotransferase, class 100.0 3.7E-34 1.2E-38 278.2 27.0 334 66-451 24-382 (383)
46 2w8t_A SPT, serine palmitoyltr 100.0 4.2E-33 1.4E-37 274.6 34.5 338 66-456 64-417 (427)
47 1b5p_A Protein (aspartate amin 100.0 9.7E-34 3.3E-38 275.4 29.3 330 66-452 31-383 (385)
48 2z61_A Probable aspartate amin 100.0 6E-34 2.1E-38 275.4 27.6 325 65-452 28-369 (370)
49 3nra_A Aspartate aminotransfer 100.0 2.2E-34 7.5E-39 282.1 24.6 341 67-455 40-406 (407)
50 1v2d_A Glutamine aminotransfer 100.0 7.9E-34 2.7E-38 275.7 28.0 333 67-456 26-373 (381)
51 3ftb_A Histidinol-phosphate am 100.0 5.2E-33 1.8E-37 267.9 33.1 322 65-453 25-360 (361)
52 1j32_A Aspartate aminotransfer 100.0 1.1E-33 3.9E-38 275.3 28.7 335 65-454 29-387 (388)
53 3hdo_A Histidinol-phosphate am 100.0 3E-33 1E-37 269.5 30.4 321 65-454 25-355 (360)
54 3p1t_A Putative histidinol-pho 100.0 4.3E-33 1.5E-37 265.8 31.1 315 66-452 16-335 (337)
55 3fdb_A Beta C-S lyase, putativ 100.0 2E-33 6.8E-38 272.4 28.2 331 65-454 22-376 (377)
56 1xi9_A Putative transaminase; 100.0 1.3E-33 4.6E-38 276.5 27.1 335 65-455 37-404 (406)
57 1o4s_A Aspartate aminotransfer 100.0 5.5E-34 1.9E-38 277.5 23.9 327 65-452 40-387 (389)
58 3ke3_A Putative serine-pyruvat 100.0 5.4E-34 1.9E-38 276.5 23.7 327 103-455 27-377 (379)
59 3hbx_A GAD 1, glutamate decarb 100.0 1.9E-32 6.3E-37 274.5 35.4 375 40-456 35-446 (502)
60 1bw0_A TAT, protein (tyrosine 100.0 2.7E-33 9.2E-38 275.2 28.2 338 66-455 33-414 (416)
61 3tqx_A 2-amino-3-ketobutyrate 100.0 1.8E-33 6.1E-38 274.9 26.4 337 66-455 43-397 (399)
62 3h14_A Aminotransferase, class 100.0 2.7E-33 9.2E-38 272.9 27.3 334 65-455 30-383 (391)
63 1fc4_A 2-amino-3-ketobutyrate 100.0 8.4E-33 2.9E-37 270.3 30.2 336 66-456 45-399 (401)
64 2dgk_A GAD-beta, GADB, glutama 100.0 4.2E-32 1.4E-36 269.4 35.5 347 77-456 52-436 (452)
65 1c7n_A Cystalysin; transferase 100.0 4.6E-33 1.6E-37 272.1 28.1 335 66-456 31-395 (399)
66 3mad_A Sphingosine-1-phosphate 100.0 4E-32 1.4E-36 273.9 35.8 311 108-456 136-471 (514)
67 2qma_A Diaminobutyrate-pyruvat 100.0 2.3E-32 7.9E-37 274.3 33.3 380 41-454 77-496 (497)
68 1u08_A Hypothetical aminotrans 100.0 1E-32 3.5E-37 268.4 29.5 332 66-449 30-385 (386)
69 2dou_A Probable N-succinyldiam 100.0 3.5E-33 1.2E-37 270.6 25.9 332 65-451 24-375 (376)
70 3cq5_A Histidinol-phosphate am 100.0 7.1E-32 2.4E-36 260.8 34.7 319 69-452 33-366 (369)
71 2x5d_A Probable aminotransfera 100.0 3.9E-33 1.3E-37 273.7 26.3 339 65-456 36-400 (412)
72 3l8a_A METC, putative aminotra 100.0 7E-33 2.4E-37 272.6 28.0 336 66-452 61-420 (421)
73 1lc5_A COBD, L-threonine-O-3-p 100.0 8.4E-33 2.9E-37 266.8 28.0 325 66-455 24-361 (364)
74 3aow_A Putative uncharacterize 100.0 7.6E-33 2.6E-37 274.0 28.1 341 66-455 76-446 (448)
75 2zyj_A Alpha-aminodipate amino 100.0 7.3E-34 2.5E-38 277.5 20.4 340 66-455 32-394 (397)
76 3ele_A Amino transferase; RER0 100.0 1.2E-32 4.2E-37 268.9 29.1 339 66-455 35-397 (398)
77 1bs0_A Protein (8-amino-7-oxon 100.0 7.7E-33 2.6E-37 269.0 27.1 332 67-450 40-383 (384)
78 3mc6_A Sphingosine-1-phosphate 100.0 3.8E-32 1.3E-36 273.1 32.9 342 79-456 76-439 (497)
79 2o1b_A Aminotransferase, class 100.0 8.6E-33 2.9E-37 270.4 26.6 334 65-454 46-403 (404)
80 2bwn_A 5-aminolevulinate synth 100.0 5.1E-33 1.8E-37 271.9 25.0 356 49-454 27-400 (401)
81 1d2f_A MALY protein; aminotran 100.0 2.6E-32 8.8E-37 265.9 29.6 334 66-454 28-389 (390)
82 2zc0_A Alanine glyoxylate tran 100.0 7.2E-33 2.5E-37 271.4 25.2 339 66-454 34-404 (407)
83 2o0r_A RV0858C (N-succinyldiam 100.0 4E-33 1.4E-37 273.5 23.4 340 66-454 25-396 (411)
84 1svv_A Threonine aldolase; str 100.0 2.4E-33 8.1E-38 269.9 21.0 329 66-454 13-358 (359)
85 3jtx_A Aminotransferase; NP_28 100.0 4.9E-32 1.7E-36 264.5 30.4 340 65-451 29-395 (396)
86 2z67_A O-phosphoseryl-tRNA(SEC 100.0 3.4E-34 1.2E-38 284.3 14.7 348 49-451 69-455 (456)
87 2jis_A Cysteine sulfinic acid 100.0 9.5E-32 3.2E-36 270.8 32.7 356 68-453 109-514 (515)
88 3fvs_A Kynurenine--oxoglutarat 100.0 4.3E-33 1.5E-37 274.3 22.2 342 66-453 28-421 (422)
89 2okj_A Glutamate decarboxylase 100.0 1E-31 3.5E-36 270.1 32.6 357 69-454 94-502 (504)
90 1fg7_A Histidinol phosphate am 100.0 2.5E-32 8.7E-37 262.5 27.1 284 113-450 60-354 (356)
91 1wyu_A Glycine dehydrogenase ( 100.0 3.2E-32 1.1E-36 269.1 28.1 317 106-451 103-437 (438)
92 1yiz_A Kynurenine aminotransfe 100.0 3.2E-32 1.1E-36 268.7 27.9 342 66-453 37-428 (429)
93 2gb3_A Aspartate aminotransfer 100.0 2.2E-32 7.6E-37 268.0 25.3 337 65-456 42-404 (409)
94 1vp4_A Aminotransferase, putat 100.0 2.8E-32 9.5E-37 268.7 25.5 341 66-456 43-420 (425)
95 2fyf_A PSAT, phosphoserine ami 100.0 5.7E-32 2E-36 264.1 27.5 341 68-453 40-397 (398)
96 2fnu_A Aminotransferase; prote 100.0 1.2E-31 4.2E-36 259.6 29.3 340 76-455 8-373 (375)
97 3ezs_A Aminotransferase ASPB; 100.0 4.6E-32 1.6E-36 262.8 25.4 325 67-454 24-375 (376)
98 3qgu_A LL-diaminopimelate amin 100.0 4.8E-32 1.7E-36 269.0 25.9 342 65-454 68-440 (449)
99 3b46_A Aminotransferase BNA3; 100.0 7.5E-32 2.5E-36 267.2 26.5 338 65-449 56-442 (447)
100 3op7_A Aminotransferase class 100.0 1.9E-31 6.4E-36 258.4 28.6 296 113-456 65-373 (375)
101 3piu_A 1-aminocyclopropane-1-c 100.0 3.2E-32 1.1E-36 269.1 21.7 344 66-456 38-434 (435)
102 1rv3_A Serine hydroxymethyltra 100.0 2.7E-32 9.4E-37 272.1 21.3 358 67-453 45-430 (483)
103 3fkd_A L-threonine-O-3-phospha 100.0 2.2E-31 7.5E-36 255.4 26.8 317 65-453 14-341 (350)
104 1js3_A DDC;, DOPA decarboxylas 100.0 5.8E-31 2E-35 263.6 30.9 381 41-456 50-476 (486)
105 1v72_A Aldolase; PLP-dependent 100.0 7.7E-32 2.6E-36 259.1 23.5 329 66-456 7-355 (356)
106 3e2y_A Kynurenine-oxoglutarate 100.0 3.8E-32 1.3E-36 266.5 21.4 337 66-449 23-408 (410)
107 1iay_A ACC synthase 2, 1-amino 100.0 1.3E-31 4.3E-36 264.3 23.5 334 66-454 36-427 (428)
108 3kki_A CAI-1 autoinducer synth 100.0 1.1E-30 3.8E-35 256.0 29.3 334 65-454 58-404 (409)
109 1wyu_B Glycine dehydrogenase s 100.0 1.2E-30 3.9E-35 260.2 29.5 359 66-453 66-440 (474)
110 3asa_A LL-diaminopimelate amin 100.0 3.1E-31 1.1E-35 259.1 23.6 338 65-454 32-393 (400)
111 2x5f_A Aspartate_tyrosine_phen 100.0 1.1E-31 3.9E-36 264.8 20.5 293 113-454 90-429 (430)
112 1pff_A Methionine gamma-lyase; 100.0 1.7E-31 5.9E-36 254.2 20.8 296 115-450 2-330 (331)
113 3vp6_A Glutamate decarboxylase 100.0 5.4E-30 1.8E-34 257.1 32.1 358 69-455 97-506 (511)
114 3if2_A Aminotransferase; YP_26 100.0 1.4E-31 4.9E-36 265.2 20.4 354 66-456 31-442 (444)
115 3ei9_A LL-diaminopimelate amin 100.0 1.2E-30 3.9E-35 257.7 26.5 335 66-455 56-429 (432)
116 1uu1_A Histidinol-phosphate am 100.0 8.4E-31 2.9E-35 249.8 24.4 307 66-450 19-334 (335)
117 2vi8_A Serine hydroxymethyltra 100.0 3.6E-31 1.2E-35 259.1 21.9 346 70-455 26-388 (405)
118 3k40_A Aromatic-L-amino-acid d 100.0 4.2E-30 1.4E-34 255.7 28.8 377 41-456 50-473 (475)
119 3uwc_A Nucleotide-sugar aminot 100.0 2.4E-30 8.3E-35 250.5 25.8 328 83-454 21-371 (374)
120 2r2n_A Kynurenine/alpha-aminoa 100.0 6.4E-30 2.2E-34 251.7 29.2 301 111-453 82-423 (425)
121 1mdo_A ARNB aminotransferase; 100.0 9.4E-30 3.2E-34 248.0 29.7 344 78-454 17-386 (393)
122 1qgn_A Protein (cystathionine 100.0 3.4E-30 1.2E-34 252.7 26.5 301 109-453 112-444 (445)
123 2rfv_A Methionine gamma-lyase; 100.0 3.5E-31 1.2E-35 258.5 19.2 339 67-450 26-396 (398)
124 3tcm_A Alanine aminotransferas 100.0 5.5E-30 1.9E-34 256.8 28.1 326 79-456 107-496 (500)
125 2cb1_A O-acetyl homoserine sul 100.0 5.9E-30 2E-34 250.7 27.7 316 110-449 55-411 (412)
126 3g7q_A Valine-pyruvate aminotr 100.0 3.1E-31 1.1E-35 260.6 18.3 346 66-456 31-415 (417)
127 2fq6_A Cystathionine beta-lyas 100.0 1.5E-30 5.1E-35 253.7 22.6 301 110-449 81-413 (415)
128 3frk_A QDTB; aminotransferase, 100.0 4.3E-30 1.5E-34 248.6 24.8 331 79-454 15-368 (373)
129 1jg8_A L-ALLO-threonine aldola 100.0 8.9E-31 3E-35 250.9 19.5 326 66-454 3-346 (347)
130 2x3l_A ORN/Lys/Arg decarboxyla 100.0 7.5E-31 2.6E-35 259.1 19.5 284 111-454 57-353 (446)
131 2oga_A Transaminase; PLP-depen 100.0 1.8E-29 6.3E-34 246.4 29.0 333 79-455 42-397 (399)
132 3ez1_A Aminotransferase MOCR f 100.0 1.4E-30 4.6E-35 256.5 20.6 341 66-455 25-416 (423)
133 4e1o_A HDC, histidine decarbox 100.0 3E-29 1E-33 250.2 30.6 377 41-455 55-479 (481)
134 1gc0_A Methionine gamma-lyase; 100.0 5.8E-30 2E-34 249.7 24.4 333 69-450 29-397 (398)
135 1b9h_A AHBA synthase, protein 100.0 9.2E-29 3.1E-33 240.6 32.8 334 79-453 15-387 (388)
136 3ruy_A Ornithine aminotransfer 100.0 5.5E-29 1.9E-33 242.5 30.5 322 68-451 36-391 (392)
137 2eh6_A Acoat, acetylornithine 100.0 4.1E-29 1.4E-33 241.9 28.6 320 67-451 27-375 (375)
138 3rq1_A Aminotransferase class 100.0 1.2E-29 4E-34 249.4 24.6 332 66-456 38-417 (418)
139 2dkj_A Serine hydroxymethyltra 100.0 2.1E-30 7.3E-35 253.7 19.2 347 66-453 23-387 (407)
140 1vef_A Acetylornithine/acetyl- 100.0 5.5E-29 1.9E-33 242.8 28.7 312 77-451 60-394 (395)
141 3qhx_A Cystathionine gamma-syn 100.0 1.5E-29 5.1E-34 245.9 24.2 299 109-447 64-391 (392)
142 1e5e_A MGL, methionine gamma-l 100.0 1.6E-28 5.4E-33 239.7 30.3 301 110-454 61-395 (404)
143 3dr4_A Putative perosamine syn 100.0 6.5E-29 2.2E-33 241.9 26.9 345 66-451 22-390 (391)
144 3ihj_A Alanine aminotransferas 100.0 1E-28 3.6E-33 247.1 29.0 325 80-456 103-495 (498)
145 3ppl_A Aspartate aminotransfer 100.0 1.7E-29 5.8E-34 248.9 22.7 303 111-455 78-421 (427)
146 1n8p_A Cystathionine gamma-lya 100.0 1E-29 3.4E-34 247.2 20.5 300 110-451 54-392 (393)
147 2c81_A Glutamine-2-deoxy-scyll 100.0 3.3E-28 1.1E-32 239.1 30.7 355 77-456 12-416 (418)
148 1cs1_A CGS, protein (cystathio 100.0 1.7E-28 5.7E-33 238.6 28.2 301 110-451 51-384 (386)
149 2po3_A 4-dehydrase; external a 100.0 1.1E-27 3.6E-32 235.9 34.2 338 71-455 21-387 (424)
150 3d6k_A Putative aminotransfera 100.0 8.8E-29 3E-33 243.4 25.7 302 112-456 77-420 (422)
151 1o69_A Aminotransferase; struc 100.0 3.3E-28 1.1E-32 237.1 29.4 335 79-453 10-386 (394)
152 3b8x_A WBDK, pyridoxamine 5-ph 100.0 1.3E-27 4.5E-32 232.6 33.0 338 76-447 10-389 (390)
153 3cog_A Cystathionine gamma-lya 100.0 3.8E-29 1.3E-33 243.8 21.7 300 111-452 67-400 (403)
154 2ord_A Acoat, acetylornithine 100.0 5.2E-28 1.8E-32 236.0 28.9 311 77-454 55-397 (397)
155 3acz_A Methionine gamma-lyase; 100.0 6.5E-29 2.2E-33 241.4 22.3 295 110-452 58-387 (389)
156 3ndn_A O-succinylhomoserine su 100.0 1.3E-28 4.3E-33 240.4 24.3 298 110-451 80-413 (414)
157 1s0a_A Adenosylmethionine-8-am 100.0 1.2E-27 4E-32 236.0 30.8 341 66-456 41-426 (429)
158 1sff_A 4-aminobutyrate aminotr 100.0 9.1E-28 3.1E-32 236.5 29.5 321 76-455 55-425 (426)
159 3t18_A Aminotransferase class 100.0 1.6E-28 5.5E-33 240.9 23.6 328 66-455 37-411 (413)
160 3n0l_A Serine hydroxymethyltra 100.0 1.8E-28 6.1E-33 240.8 23.5 345 68-454 27-389 (417)
161 3nyt_A Aminotransferase WBPE; 100.0 4.1E-28 1.4E-32 234.2 24.9 337 70-451 4-361 (367)
162 4adb_A Succinylornithine trans 100.0 4E-28 1.4E-32 237.5 25.2 329 68-456 39-402 (406)
163 3f6t_A Aspartate aminotransfer 100.0 6.4E-29 2.2E-33 250.6 19.2 358 67-455 104-526 (533)
164 3bwn_A AT1G70560, L-tryptophan 100.0 2.2E-29 7.6E-34 244.8 13.9 341 53-453 11-386 (391)
165 1ibj_A CBL, cystathionine beta 100.0 1.4E-28 4.7E-33 243.2 19.7 299 112-454 134-462 (464)
166 2pb2_A Acetylornithine/succiny 100.0 3.2E-27 1.1E-31 231.9 28.5 322 67-454 56-418 (420)
167 3gbx_A Serine hydroxymethyltra 100.0 2.3E-28 7.8E-33 240.3 20.4 338 77-454 40-396 (420)
168 3b1d_A Betac-S lyase; HET: PLP 99.9 3.3E-31 1.1E-35 258.2 0.0 329 67-452 32-391 (392)
169 3nx3_A Acoat, acetylornithine 100.0 4.9E-27 1.7E-31 228.9 29.3 326 68-453 36-394 (395)
170 1z7d_A Ornithine aminotransfer 100.0 1.1E-26 3.6E-31 228.9 31.8 329 67-456 64-431 (433)
171 2ctz_A O-acetyl-L-homoserine s 100.0 1.5E-27 5.1E-32 234.1 24.9 318 110-451 57-420 (421)
172 4f4e_A Aromatic-amino-acid ami 100.0 4.4E-28 1.5E-32 238.3 19.5 327 67-451 50-419 (420)
173 3fsl_A Aromatic-amino-acid ami 100.0 1.5E-28 5E-33 239.9 15.8 328 66-451 26-397 (397)
174 2aeu_A Hypothetical protein MJ 100.0 1.2E-27 3.9E-32 231.2 21.4 324 67-456 29-373 (374)
175 2oat_A Ornithine aminotransfer 100.0 3E-26 1E-30 226.1 31.2 328 67-453 75-438 (439)
176 3ri6_A O-acetylhomoserine sulf 100.0 4E-27 1.4E-31 230.2 24.3 315 110-451 81-429 (430)
177 2eo5_A 419AA long hypothetical 100.0 3.4E-26 1.2E-30 224.6 30.9 325 67-454 41-418 (419)
178 3bb8_A CDP-4-keto-6-deoxy-D-gl 100.0 5.9E-26 2E-30 224.2 32.4 354 66-452 31-434 (437)
179 1ajs_A Aspartate aminotransfer 100.0 4.5E-28 1.6E-32 237.6 17.0 331 66-454 30-411 (412)
180 2a7v_A Serine hydroxymethyltra 100.0 5.8E-27 2E-31 231.4 24.9 344 74-453 61-440 (490)
181 3ecd_A Serine hydroxymethyltra 100.0 4E-27 1.4E-31 231.8 23.7 340 76-454 41-397 (425)
182 3ju7_A Putative PLP-dependent 100.0 1.3E-26 4.3E-31 223.9 26.5 337 78-454 13-375 (377)
183 7aat_A Aspartate aminotransfer 100.0 2.4E-27 8.2E-32 231.6 21.5 320 70-451 38-400 (401)
184 1yaa_A Aspartate aminotransfer 100.0 1.1E-28 3.6E-33 242.1 11.2 326 66-454 29-411 (412)
185 2ay1_A Aroat, aromatic amino a 100.0 5.7E-28 1.9E-32 235.5 15.2 326 66-450 26-392 (394)
186 3dxv_A Alpha-amino-epsilon-cap 100.0 4.1E-26 1.4E-30 225.6 28.6 324 79-455 60-426 (439)
187 3h7f_A Serine hydroxymethyltra 100.0 1.4E-26 4.7E-31 229.2 24.7 347 68-454 47-414 (447)
188 3a8u_X Omega-amino acid--pyruv 99.9 3.7E-26 1.3E-30 226.5 26.9 346 67-454 49-447 (449)
189 2q7w_A Aspartate aminotransfer 99.9 6E-28 2.1E-32 235.4 13.9 323 66-451 26-396 (396)
190 1c4k_A Protein (ornithine deca 99.9 1.9E-26 6.4E-31 237.6 25.5 309 112-454 174-566 (730)
191 3meb_A Aspartate aminotransfer 99.9 1.2E-26 4.2E-31 229.6 23.3 325 69-454 58-444 (448)
192 1zod_A DGD, 2,2-dialkylglycine 99.9 4.8E-26 1.7E-30 224.7 25.0 338 67-454 42-432 (433)
193 1ax4_A Tryptophanase; tryptoph 99.9 7.4E-27 2.5E-31 232.8 18.9 340 67-455 42-442 (467)
194 2ez2_A Beta-tyrosinase, tyrosi 99.9 6.6E-26 2.3E-30 225.2 25.3 336 66-455 40-432 (456)
195 3i4j_A Aminotransferase, class 99.9 8.3E-26 2.8E-30 222.7 24.7 348 68-454 29-428 (430)
196 2cjg_A L-lysine-epsilon aminot 99.9 5.6E-26 1.9E-30 224.8 23.2 337 67-454 53-448 (449)
197 3nmy_A Xometc, cystathionine g 99.9 5.7E-26 1.9E-30 220.6 22.0 298 110-452 66-397 (400)
198 2zy4_A L-aspartate beta-decarb 99.9 1.8E-25 6.3E-30 225.3 25.2 355 68-455 106-523 (546)
199 3n5m_A Adenosylmethionine-8-am 99.9 1.8E-24 6E-29 214.6 31.9 337 76-453 63-451 (452)
200 3gju_A Putative aminotransfera 99.9 1.7E-24 5.9E-29 215.0 31.6 333 76-456 65-458 (460)
201 3dod_A Adenosylmethionine-8-am 99.9 2.4E-24 8.3E-29 213.3 32.6 346 67-457 43-446 (448)
202 2vyc_A Biodegradative arginine 99.9 1.5E-25 5.1E-30 233.1 24.5 302 111-454 205-605 (755)
203 2hox_A ALLIIN lyase 1; cystein 99.9 7.5E-27 2.6E-31 229.3 13.4 334 66-453 56-424 (427)
204 4a6r_A Omega transaminase; tra 99.9 3.3E-24 1.1E-28 212.9 30.0 338 67-455 49-450 (459)
205 3pj0_A LMO0305 protein; struct 99.9 1.6E-25 5.3E-30 215.4 19.4 293 110-450 47-358 (359)
206 3lws_A Aromatic amino acid bet 99.9 3.8E-26 1.3E-30 219.5 14.7 291 111-451 47-356 (357)
207 3tfu_A Adenosylmethionine-8-am 99.9 1E-24 3.5E-29 215.9 25.1 334 69-456 76-455 (457)
208 4ffc_A 4-aminobutyrate aminotr 99.9 4.4E-24 1.5E-28 211.4 29.2 341 67-456 63-451 (453)
209 3k7y_A Aspartate aminotransfer 99.9 1.8E-25 6.1E-30 217.2 18.7 328 66-453 29-404 (405)
210 4eu1_A Mitochondrial aspartate 99.9 1.5E-25 5.2E-30 219.4 18.2 323 66-451 41-408 (409)
211 3oks_A 4-aminobutyrate transam 99.9 4.4E-24 1.5E-28 211.4 27.4 339 66-453 59-450 (451)
212 3hmu_A Aminotransferase, class 99.9 1.5E-23 5.3E-28 208.2 31.3 336 66-455 53-453 (472)
213 2oqx_A Tryptophanase; lyase, p 99.9 1.8E-25 6.1E-30 222.8 16.6 341 66-456 39-444 (467)
214 3l44_A Glutamate-1-semialdehyd 99.9 6.3E-24 2.1E-28 209.6 25.7 327 67-456 54-432 (434)
215 2epj_A Glutamate-1-semialdehyd 99.9 2.3E-24 7.9E-29 212.6 22.1 316 77-455 71-432 (434)
216 3i5t_A Aminotransferase; pyrid 99.9 8E-23 2.7E-27 203.4 31.0 342 67-455 53-455 (476)
217 3jzl_A Putative cystathionine 99.9 4.2E-24 1.4E-28 207.2 20.1 259 113-402 61-338 (409)
218 2cy8_A D-phgat, D-phenylglycin 99.9 2.4E-23 8.2E-28 206.5 26.0 315 77-456 72-437 (453)
219 3k28_A Glutamate-1-semialdehyd 99.9 9.6E-24 3.3E-28 207.9 21.0 323 66-455 51-428 (429)
220 1ohv_A 4-aminobutyrate aminotr 99.9 1.1E-22 3.8E-27 202.1 27.9 334 66-454 61-471 (472)
221 4h51_A Aspartate aminotransfer 99.9 6.4E-24 2.2E-28 206.2 18.2 332 70-456 54-419 (420)
222 3i16_A Aluminum resistance pro 99.9 1.5E-23 5E-28 204.0 20.6 257 113-402 75-355 (427)
223 4e77_A Glutamate-1-semialdehyd 99.9 1.9E-22 6.5E-27 198.6 27.0 324 66-453 51-428 (429)
224 2e7u_A Glutamate-1-semialdehyd 99.9 3E-23 1E-27 204.1 20.3 312 77-451 67-424 (424)
225 3fq8_A Glutamate-1-semialdehyd 99.9 9.6E-23 3.3E-27 200.6 23.9 313 78-453 68-426 (427)
226 3hvy_A Cystathionine beta-lyas 99.9 1.4E-22 4.8E-27 197.0 23.7 255 113-401 76-354 (427)
227 3n75_A LDC, lysine decarboxyla 99.9 5.1E-21 1.7E-25 195.5 26.3 296 112-453 196-559 (715)
228 3ht4_A Aluminum resistance pro 99.9 9.2E-22 3.1E-26 192.4 17.4 260 112-402 66-344 (431)
229 3bc8_A O-phosphoseryl-tRNA(SEC 99.9 1.3E-20 4.5E-25 181.6 21.2 315 107-456 94-445 (450)
230 2yky_A Beta-transaminase; tran 99.8 1.2E-23 4.3E-28 206.5 0.0 319 77-456 115-462 (465)
231 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 2.6E-20 9E-25 176.7 18.9 305 116-456 122-463 (501)
232 4atq_A 4-aminobutyrate transam 99.8 2.3E-18 7.7E-23 168.7 30.5 339 66-453 62-454 (456)
233 3ou5_A Serine hydroxymethyltra 99.8 3.9E-19 1.3E-23 167.9 22.9 339 75-452 62-439 (490)
234 4ao9_A Beta-phenylalanine amin 99.8 5.1E-19 1.7E-23 172.5 20.7 323 66-456 85-448 (454)
235 4e3q_A Pyruvate transaminase; 99.8 1.1E-16 3.7E-21 157.4 27.8 344 66-455 65-469 (473)
236 4a0g_A Adenosylmethionine-8-am 99.7 1.6E-15 5.3E-20 159.0 22.4 343 69-455 381-829 (831)
237 3qtp_A Enolase 1; glycolysis, 53.7 41 0.0014 31.9 8.0 98 138-244 281-379 (441)
238 1tks_A 3,4-dihydroxy-2-butanon 53.4 21 0.00071 29.8 5.2 35 208-242 159-193 (204)
239 2pju_A Propionate catabolism o 50.7 1.2E+02 0.004 25.8 10.3 12 131-142 65-76 (225)
240 3uj2_A Enolase 1; enzyme funct 49.3 1.4E+02 0.0048 28.4 11.1 98 139-244 292-390 (449)
241 3qn3_A Enolase; structural gen 47.8 1.3E+02 0.0046 28.2 10.6 100 138-245 263-363 (417)
242 2orv_A Thymidine kinase; TP4A 47.0 69 0.0024 27.4 7.7 93 138-247 33-125 (234)
243 3tqp_A Enolase; energy metabol 46.2 1.9E+02 0.0065 27.3 11.4 99 138-244 265-364 (428)
244 3otr_A Enolase; structural gen 41.3 69 0.0024 30.4 7.4 101 137-245 282-383 (452)
245 3gi1_A LBP, laminin-binding pr 40.3 88 0.003 27.7 7.8 73 156-242 178-255 (286)
246 2al1_A Enolase 1, 2-phospho-D- 39.9 72 0.0024 30.3 7.5 96 138-243 275-371 (436)
247 2akz_A Gamma enolase, neural; 39.7 84 0.0029 29.9 7.9 95 139-243 273-368 (439)
248 3keo_A Redox-sensing transcrip 38.2 78 0.0027 26.7 6.6 113 113-248 68-182 (212)
249 3m9w_A D-xylose-binding peripl 37.5 63 0.0021 28.6 6.6 74 165-243 15-88 (313)
250 3rjz_A N-type ATP pyrophosphat 37.2 1.4E+02 0.0049 25.5 8.3 100 131-242 7-120 (237)
251 3sho_A Transcriptional regulat 37.1 1.1E+02 0.0037 24.6 7.5 35 204-242 84-118 (187)
252 3mio_A DHBP synthase, 3,4-dihy 37.0 64 0.0022 27.0 5.7 35 208-242 158-193 (206)
253 4gqr_A Pancreatic alpha-amylas 34.8 21 0.00071 34.4 3.0 88 153-248 5-100 (496)
254 2o1e_A YCDH; alpha-beta protei 34.4 1.2E+02 0.0039 27.3 7.7 73 156-242 189-266 (312)
255 1g57_A DHBP synthase, 3,4-dihy 34.4 75 0.0026 26.8 5.8 34 208-242 167-200 (217)
256 3kts_A Glycerol uptake operon 32.8 46 0.0016 27.6 4.2 51 197-252 18-70 (192)
257 3i6i_A Putative leucoanthocyan 32.2 1.7E+02 0.0057 26.3 8.6 98 131-243 12-116 (346)
258 2ptz_A Enolase; lyase, glycoly 32.1 91 0.0031 29.5 6.8 86 156-244 287-373 (432)
259 2fym_A Enolase; RNA degradosom 31.8 1.7E+02 0.0059 27.6 8.7 85 158-245 284-369 (431)
260 2yva_A DNAA initiator-associat 31.4 1.4E+02 0.0047 24.3 7.3 37 202-242 104-140 (196)
261 3bbl_A Regulatory protein of L 31.1 1.6E+02 0.0056 25.4 8.2 71 168-245 24-95 (287)
262 3rpc_A Possible metal-dependen 31.0 2.4E+02 0.0082 24.2 9.1 79 158-239 161-249 (264)
263 3bzy_B ESCU; auto cleavage pro 31.0 27 0.00091 24.5 2.1 20 227-246 29-48 (83)
264 3ujp_A Mn transporter subunit; 30.9 99 0.0034 27.7 6.5 71 157-241 190-265 (307)
265 3mfq_A TROA, high-affinity zin 30.8 43 0.0015 29.7 4.1 66 174-243 173-243 (282)
266 3qr3_A Endoglucanase EG-II; TI 30.8 1.4E+02 0.0047 27.2 7.6 59 171-249 45-108 (340)
267 2pa6_A Enolase; glycolysis, ly 30.8 80 0.0027 29.9 6.2 96 138-243 269-365 (427)
268 1snn_A DHBP synthase, 3,4-dihy 30.7 71 0.0024 27.1 5.1 34 208-242 178-211 (227)
269 3tha_A Tryptophan synthase alp 30.4 1.9E+02 0.0064 25.1 7.9 84 156-243 116-204 (252)
270 1x92_A APC5045, phosphoheptose 30.4 1.3E+02 0.0044 24.5 6.9 39 200-242 106-144 (199)
271 1g94_A Alpha-amylase; beta-alp 29.1 29 0.001 33.1 2.9 33 216-248 56-88 (448)
272 3jug_A Beta-mannanase; TIM-bar 28.7 93 0.0032 28.4 6.1 15 178-192 63-77 (345)
273 3jy6_A Transcriptional regulat 28.6 55 0.0019 28.3 4.5 69 169-245 24-93 (276)
274 1pq4_A Periplasmic binding pro 28.1 1.4E+02 0.0049 26.4 7.1 72 156-242 189-264 (291)
275 3m6w_A RRNA methylase; rRNA me 28.0 2.6E+02 0.0089 26.7 9.3 95 119-224 92-186 (464)
276 3uug_A Multiple sugar-binding 27.4 72 0.0025 28.4 5.1 72 169-245 20-92 (330)
277 3dm5_A SRP54, signal recogniti 27.3 4E+02 0.014 25.2 11.9 29 426-454 398-426 (443)
278 3ghf_A Septum site-determining 26.6 1.9E+02 0.0065 21.6 6.5 19 224-242 60-78 (120)
279 2gjh_A Designed protein; oblig 26.3 1.1E+02 0.0039 18.5 4.4 28 426-454 3-30 (62)
280 3bh0_A DNAB-like replicative h 26.2 2.6E+02 0.009 24.8 8.7 48 196-243 162-226 (315)
281 3guv_A Site-specific recombina 26.0 2E+02 0.0069 22.6 7.1 70 174-243 31-110 (167)
282 2j9r_A Thymidine kinase; TK1, 25.9 1.4E+02 0.0048 25.1 6.2 95 138-246 42-136 (214)
283 4a1f_A DNAB helicase, replicat 25.8 1.2E+02 0.004 27.7 6.1 40 125-169 42-86 (338)
284 3l6u_A ABC-type sugar transpor 25.3 73 0.0025 27.7 4.7 71 170-245 26-97 (293)
285 3bgw_A DNAB-like replicative h 25.1 2.9E+02 0.0098 26.1 9.0 48 196-243 291-355 (444)
286 3bh4_A Alpha-amylase; calcium, 25.0 42 0.0014 32.4 3.2 32 217-248 71-102 (483)
287 3o63_A Probable thiamine-phosp 24.9 64 0.0022 27.9 4.0 49 198-246 46-104 (243)
288 2vt1_B Surface presentation of 24.8 39 0.0013 24.2 2.1 20 227-246 29-48 (93)
289 3ecs_A Translation initiation 24.8 3.8E+02 0.013 24.0 13.6 100 131-243 123-228 (315)
290 3m4x_A NOL1/NOP2/SUN family pr 24.8 3.3E+02 0.011 25.9 9.3 95 119-224 96-191 (456)
291 1qyd_A Pinoresinol-lariciresin 24.8 2.6E+02 0.0087 24.4 8.4 54 181-240 55-110 (313)
292 2poz_A Putative dehydratase; o 24.7 2.4E+02 0.0083 26.0 8.4 82 156-243 224-306 (392)
293 1q57_A DNA primase/helicase; d 24.6 3.6E+02 0.012 25.8 9.9 48 196-243 337-399 (503)
294 3nl6_A Thiamine biosynthetic b 24.6 63 0.0021 31.7 4.3 48 198-245 28-76 (540)
295 3nav_A Tryptophan synthase alp 24.5 3.5E+02 0.012 23.6 8.8 83 157-243 126-213 (271)
296 3dbi_A Sugar-binding transcrip 24.5 97 0.0033 27.7 5.5 71 169-245 80-151 (338)
297 1mxg_A Alpha amylase; hyperthe 24.5 43 0.0015 31.9 3.0 32 217-248 79-110 (435)
298 1ud2_A Amylase, alpha-amylase; 24.4 43 0.0015 32.2 3.2 32 217-248 73-104 (480)
299 2r6j_A Eugenol synthase 1; phe 24.4 2.8E+02 0.0097 24.3 8.6 97 131-243 13-112 (318)
300 1wpc_A Glucan 1,4-alpha-maltoh 24.3 44 0.0015 32.3 3.2 32 217-248 75-106 (485)
301 1ry2_A Acetyl-coenzyme A synth 24.2 3.3E+02 0.011 27.2 9.9 32 198-229 175-207 (663)
302 1lwj_A 4-alpha-glucanotransfer 24.2 44 0.0015 31.7 3.2 31 218-248 63-93 (441)
303 1uta_A FTSN, MSGA, cell divisi 24.2 92 0.0031 21.2 4.0 47 391-449 22-68 (81)
304 3tb6_A Arabinose metabolism tr 24.1 1.3E+02 0.0045 26.0 6.2 75 169-245 32-107 (298)
305 3t7y_A YOP proteins translocat 24.0 36 0.0012 24.6 1.9 20 227-246 44-63 (97)
306 1hvx_A Alpha-amylase; hydrolas 23.8 45 0.0015 32.5 3.2 32 217-248 74-105 (515)
307 4fgs_A Probable dehydrogenase 23.8 3.2E+02 0.011 23.8 8.4 83 131-224 31-119 (273)
308 4af8_A Metacaspase MCA2; hydro 23.7 1.1E+02 0.0038 28.2 5.5 54 113-169 116-180 (367)
309 4h1h_A LMO1638 protein; MCCF-l 23.7 2E+02 0.007 25.9 7.3 76 152-227 7-97 (327)
310 2gl5_A Putative dehydratase pr 23.4 2.3E+02 0.0077 26.4 7.9 83 156-244 243-326 (410)
311 3hh8_A Metal ABC transporter s 23.4 1.3E+02 0.0043 26.8 5.8 71 158-242 184-259 (294)
312 1ht6_A AMY1, alpha-amylase iso 23.4 48 0.0016 31.1 3.1 30 219-248 63-92 (405)
313 3pzt_A Endoglucanase; alpha/be 23.3 1.3E+02 0.0043 27.2 5.9 20 227-246 107-126 (327)
314 3cx3_A Lipoprotein; zinc-bindi 22.9 1E+02 0.0036 27.1 5.1 73 156-242 176-253 (284)
315 3c01_E Surface presentation of 22.8 40 0.0014 24.5 1.9 20 227-246 29-48 (98)
316 1w6t_A Enolase; bacterial infe 22.7 1.6E+02 0.0054 28.0 6.7 98 139-244 282-380 (444)
317 1gcy_A Glucan 1,4-alpha-maltot 22.6 50 0.0017 32.3 3.2 30 219-248 87-116 (527)
318 3tla_A MCCF; serine protease, 22.5 2.6E+02 0.009 25.7 7.9 76 152-227 38-128 (371)
319 2prs_A High-affinity zinc upta 22.5 1.2E+02 0.0042 26.6 5.5 73 156-242 173-250 (284)
320 2ioj_A Hypothetical protein AF 22.5 2.6E+02 0.0088 21.2 7.6 39 199-243 64-103 (139)
321 3h5o_A Transcriptional regulat 22.1 1.6E+02 0.0056 26.2 6.5 73 166-245 76-149 (339)
322 3jva_A Dipeptide epimerase; en 22.1 4.4E+02 0.015 23.8 9.5 88 154-247 206-294 (354)
323 1v77_A PH1877P, hypothetical p 22.0 63 0.0022 27.1 3.3 70 175-245 90-167 (212)
324 3l77_A Short-chain alcohol deh 21.9 3.4E+02 0.012 22.4 9.5 86 131-223 4-95 (235)
325 4aie_A Glucan 1,6-alpha-glucos 21.9 51 0.0018 32.2 3.2 30 219-248 74-103 (549)
326 3bk2_A RNAse J, metal dependen 21.8 5.3E+02 0.018 25.1 10.5 81 154-239 336-423 (562)
327 1tjy_A Sugar transport protein 21.8 1.2E+02 0.004 27.0 5.3 68 171-243 22-90 (316)
328 1iv0_A Hypothetical protein; r 21.7 1.7E+02 0.0058 21.0 5.1 53 195-247 37-95 (98)
329 2yxb_A Coenzyme B12-dependent 21.6 2.1E+02 0.0072 22.6 6.3 59 174-238 38-97 (161)
330 2guy_A Alpha-amylase A; (beta- 21.5 50 0.0017 31.8 2.9 32 217-248 90-121 (478)
331 3ju3_A Probable 2-oxoacid ferr 21.5 1.2E+02 0.004 22.6 4.4 43 181-225 38-80 (118)
332 2dh2_A 4F2 cell-surface antige 21.5 52 0.0018 31.1 3.0 32 217-248 74-105 (424)
333 1zco_A 2-dehydro-3-deoxyphosph 21.4 1.6E+02 0.0053 25.7 5.8 124 110-251 73-205 (262)
334 3enk_A UDP-glucose 4-epimerase 21.4 3.6E+02 0.012 23.8 8.7 79 131-217 7-87 (341)
335 2rgy_A Transcriptional regulat 21.3 1.3E+02 0.0044 26.1 5.5 70 169-245 25-98 (290)
336 3ff4_A Uncharacterized protein 21.1 1E+02 0.0034 23.3 4.0 37 200-243 74-110 (122)
337 3k9c_A Transcriptional regulat 21.1 1.3E+02 0.0043 26.2 5.4 48 169-217 28-75 (289)
338 1chr_A Chloromuconate cycloiso 21.1 4E+02 0.014 24.3 9.0 83 157-245 214-297 (370)
339 1xvl_A Mn transporter, MNTC pr 21.1 2.7E+02 0.0091 25.0 7.6 72 157-242 204-280 (321)
340 1jae_A Alpha-amylase; glycosid 21.0 43 0.0015 32.2 2.3 33 216-248 66-98 (471)
341 2nly_A BH1492 protein, diverge 21.0 2.1E+02 0.0073 24.6 6.5 124 110-242 83-219 (245)
342 4g81_D Putative hexonate dehyd 21.0 4E+02 0.014 22.9 8.9 92 123-224 4-102 (255)
343 1qop_A Tryptophan synthase alp 20.8 4.1E+02 0.014 22.9 9.4 84 158-245 124-212 (268)
344 4fc7_A Peroxisomal 2,4-dienoyl 20.6 4E+02 0.014 22.8 9.6 80 131-217 29-114 (277)
345 1wza_A Alpha-amylase A; hydrol 20.5 51 0.0017 31.8 2.8 29 220-248 77-105 (488)
346 3dhu_A Alpha-amylase; structur 20.5 50 0.0017 31.4 2.7 30 219-248 78-107 (449)
347 3ayr_A Endoglucanase; TIM barr 20.5 1.7E+02 0.0058 26.9 6.3 21 227-247 105-125 (376)
348 3ruf_A WBGU; rossmann fold, UD 20.5 3.8E+02 0.013 23.7 8.8 98 131-239 27-143 (351)
349 3dip_A Enolase; structural gen 20.5 4E+02 0.014 24.8 8.9 85 156-246 238-324 (410)
350 2rfg_A Dihydrodipicolinate syn 20.5 2E+02 0.0069 25.5 6.5 38 209-247 127-164 (297)
351 3lab_A Putative KDPG (2-keto-3 20.3 3.9E+02 0.013 22.4 9.1 58 196-264 73-136 (217)
352 3u9i_A Mandelate racemase/muco 20.1 2.7E+02 0.0091 25.9 7.5 86 155-246 243-328 (393)
353 3tj4_A Mandelate racemase; eno 20.1 3.2E+02 0.011 25.0 8.1 84 154-243 220-304 (372)
354 4f6o_A Metacaspase-1; rossmann 20.1 3.6E+02 0.012 24.6 8.1 56 114-171 78-142 (350)
355 3vnd_A TSA, tryptophan synthas 20.1 4.3E+02 0.015 22.9 8.4 83 157-243 124-211 (267)
356 3ic5_A Putative saccharopine d 20.0 2.4E+02 0.0082 20.0 8.8 90 131-242 7-97 (118)
No 1
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=8.9e-48 Score=377.15 Aligned_cols=399 Identities=46% Similarity=0.805 Sum_probs=334.4
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||..+.... +++++|||+++.++.|+.+.+++.+++.....+++.+.+..++...+..+++++.+++++|.++
T Consensus 6 ~~~r~~f~~~~~~~~-g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 84 (406)
T 1kmj_A 6 DKVRADFPVLSREVN-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS 84 (406)
T ss_dssp HHHHHTCGGGGCEET-TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHhCcccccccC-CCceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 457889998743211 3468999999999999999999999998876666655555556677888999999999999832
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
.++|++|+|+|+|+.+++.++....+++||+|+++.++|++....+..+++..|++++.++.++++.+|++++++.++++
T Consensus 85 ~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~ 164 (406)
T 1kmj_A 85 AEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEK 164 (406)
T ss_dssp GGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTT
T ss_pred CCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccC
Confidence 24999999999999999998721015789999999999999988888888888999999999888889999999999999
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
+++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||.+|+.|+|++++++++++
T Consensus 165 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~ 244 (406)
T 1kmj_A 165 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ 244 (406)
T ss_dssp EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHH
T ss_pred CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHh
Confidence 99999999999999999999999999999999999999999887666555679999999999889989999999999888
Q ss_pred cCCCccccCcceEeeecC-CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 289 AMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
.+.+...+|+........ ...+...+.+++.|+++..+++++.++++++.+.+++++.++.+++++++.+.|+++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 324 (406)
T 1kmj_A 245 EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLT 324 (406)
T ss_dssp HCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred hcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 888777666543322111 1123344567788999999999998899998877899999999999999999999988999
Q ss_pred EeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 368 IYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
+..+. .++++++|.+++.+..++.+.|.++ ||.+++|..|..+....+|.++++|++++.+++++|++++++.|
T Consensus 325 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l 398 (406)
T 1kmj_A 325 LYGPQ-----NRLGVIAFNLGKHHAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGL 398 (406)
T ss_dssp EESCT-----TCCSEEEEEETTCCHHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHH
T ss_pred EecCC-----CcCCEEEEEECCCCHHHHHHHHhhC-CcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 87653 1277888888877788899999888 99999999888766555666789999999999999999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
+++++.+
T Consensus 399 ~~~~~~l 405 (406)
T 1kmj_A 399 QRIHRLL 405 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
No 2
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=5.4e-47 Score=373.34 Aligned_cols=410 Identities=62% Similarity=1.009 Sum_probs=337.1
Q ss_pred CCccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 012718 42 TDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVA 121 (458)
Q Consensus 42 ~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 121 (458)
...+.+++.+|++||....... +++++||+++..++.|+.+.+++.+.+.....+++.+.+.++....+..+++++.++
T Consensus 4 ~~~~~~~~~~r~~f~~~~~~~~-g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la 82 (420)
T 1t3i_A 4 LQIPSLAATVRQDFPILNQEIN-GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 82 (420)
T ss_dssp ---CCHHHHHGGGCGGGSCEET-TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhCCccccccC-CCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 4456788999999998743211 245899999999999999999999998876655554444444444677889999999
Q ss_pred HHcCC-CCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHH
Q 012718 122 AFINA-SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDK 200 (458)
Q Consensus 122 ~~~g~-~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~ 200 (458)
+++|. ++ +++++|+|+|+|+.+++.++....+++||+|+++.++|++...++..+++..|++++.++.++++.+|+++
T Consensus 83 ~~~~~~~~-~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~ 161 (420)
T 1t3i_A 83 KFINARSP-REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEH 161 (420)
T ss_dssp HHTTCSCG-GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHH
T ss_pred HHcCCCCC-CeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHH
Confidence 99999 44 49999999999999999987210157899999999999998877888888889999999998888899999
Q ss_pred HHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEE
Q 012718 201 LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFL 280 (458)
Q Consensus 201 l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l 280 (458)
+++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||++|+.|+|++
T Consensus 162 l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~ 241 (420)
T 1t3i_A 162 FKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFL 241 (420)
T ss_dssp HHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEE
T ss_pred HHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEE
Confidence 99999999999999999999999999999999999999999999999998876666666799999999999999889999
Q ss_pred EEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
++++++++.+.+...+|+...........|...+.+++.|+++..+.+++..+++++.+.+++++.++.+++++++.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 321 (420)
T 1t3i_A 242 YGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGL 321 (420)
T ss_dssp EECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888776666544332222223344456777889999999999889999887789999999999999999999
Q ss_pred hcCCCEEEeCCCCCCcC-ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 361 LSIPNIRIYGPKPSEHV-QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 361 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
++++++++..+... . .++++++|.+++.+..++.+.|.++ ||.+++|.+|..+.+..+|.++++|++++.+++++|
T Consensus 322 ~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~ 398 (420)
T 1t3i_A 322 GQIPQLRLYGPNPK--HGDRAALASFNVAGLHASDVATMVDQD-GIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEE 398 (420)
T ss_dssp HTCTTEEEESCCGG--GSCBCSEEEEEETTBCHHHHHHHHHTT-TEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHH
T ss_pred HhCCCeEEeCCCcc--ccccCCEEEEEECCCCHHHHHHHHHHC-CeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHH
Confidence 99889998766410 0 1367888888876778899999888 999999988877655556667899999999899999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 012718 440 VDEFIHALNETVSFFNV 456 (458)
Q Consensus 440 i~~l~~~l~~~~~~~~~ 456 (458)
+++++++|+++++++++
T Consensus 399 i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 399 IDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999987754
No 3
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-43 Score=347.97 Aligned_cols=372 Identities=24% Similarity=0.404 Sum_probs=307.5
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||.+ .++.+|||+++.+++|+.+.+++.+.+.....++. +.+..+.......+++++.+++++|+++
T Consensus 14 ~~~r~~fp~~------~~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~ 86 (406)
T 3cai_A 14 ARVRGLHPSL------GDGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADP 86 (406)
T ss_dssp HHHHHTCTTT------TSSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHhhhhc------CCCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4678999998 24689999999999999999999999876544442 3344455567788899999999999975
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR 207 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~ 207 (458)
+ +|++|+|+|+++.+++.++.. .+++||+|+++.++|++...++..+++..|++++.++++ +++.+|+++|++.+++
T Consensus 87 ~-~v~~~~g~t~al~~~~~~l~~-~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~ 164 (406)
T 3cai_A 87 G-GVVLGADRAVLLSLLAEASSS-RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK 164 (406)
T ss_dssp G-GEEEESCHHHHHHHHHHHTGG-GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT
T ss_pred C-eEEEeCChHHHHHHHHHHHhh-ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC
Confidence 5 899999999999999987621 157899999999999998888887777779999999998 6788999999999999
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCcee-EEEEeccc
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIG-FLFGKSDL 286 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G-~l~~~~~~ 286 (458)
++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||++||. +| ++++++++
T Consensus 165 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~ 243 (406)
T 3cai_A 165 STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSV 243 (406)
T ss_dssp TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHH
T ss_pred CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHH
Confidence 99999999999999999999999999999999999999999888777666667999999999988876 88 99999988
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC--------------HHHHHHHHHHH
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG--------------MQKIHAYEMEL 352 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g--------------~~~~~~~~~~l 352 (458)
++.+.+....++. ..+.+++.+|++...+.++.++++++...| ++++.++.+++
T Consensus 244 ~~~l~~~~~~~~~------------~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (406)
T 3cai_A 244 MNSFGSVSTNPYA------------TGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRV 311 (406)
T ss_dssp HHTSCCCCSCTTC------------CGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCcccCCCC------------CccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHH
Confidence 7777654321110 012456678999999989989999887654 78899999999
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC---CCeEEE
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV---NASARA 429 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~---~~~lRi 429 (458)
++++.+.|++++++++..+.. .++++++|.+++.+..++.+.|.++ ||.+++|. .......+|. .+++|+
T Consensus 312 ~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~-gi~v~~g~--~~~~~~~~g~~~~~~~iRi 384 (406)
T 3cai_A 312 FDYLMVSLRSLPLVMLIGRPE----AQIPVVSFAVHKVPADRVVQRLADN-GILAIANT--GSRVLDVLGVNDVGGAVTV 384 (406)
T ss_dssp HHHHHHHHHTCTTEEECCCCS----SBCSEEEEEETTBCHHHHHHHHHHT-TEECEECC--SCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHhcCCCeEEcCCcc----ccCCEEEEEECCcCHHHHHHHHHHC-CcEEecCC--hHHHHHHcCCCCCCCeEEE
Confidence 999999999988998876541 3466899999877788899999887 99998876 1222223332 478999
Q ss_pred eeCCCCCHHHHHHHHHHHHH
Q 012718 430 SLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 430 s~~~~~t~~di~~l~~~l~~ 449 (458)
+++.+++++|+++++++|++
T Consensus 385 s~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 385 GLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp ECCTTCCHHHHHHHHHHHHT
T ss_pred EeecCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 4
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=5.9e-43 Score=339.87 Aligned_cols=364 Identities=26% Similarity=0.413 Sum_probs=301.2
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
++|||+++.+++|+.+.+++.+++.....+++. .+..+....+..+++++.+++++|++++ ++++|+|+|+|+.+++.
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~~~a~~~~~~ 78 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFTSGATEANNLAII 78 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTE-EEEEESSHHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEECCchHHHHHHHH
Confidence 489999999999999999999999876666643 4555566788889999999999999765 89999999999999999
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++.....++||+|+++.++|++....+..+ +..|++++.+++++++.+|++++++++++++++|++++++||||.+.|+
T Consensus 79 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~ 157 (382)
T 4hvk_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPV 157 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHHH-HHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCH
T ss_pred HhhhhhcCCCCEEEECCCCcHHHHHHHHHH-HhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCH
Confidence 872000179999999999999877655543 5679999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
++|.++|+++|+ +|+|++|+.+..++++...++|++++|+||++|+.|+|+++++++. .+.+...++..
T Consensus 158 ~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~-------- 226 (382)
T 4hvk_A 158 EEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQ-------- 226 (382)
T ss_dssp HHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCT--------
T ss_pred HHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCC--------
Confidence 999999999999 9999999999887777666799999999999999999999999876 45544443322
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 308 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
..++..++++...+.++.++++++.+ +++++.++.+++++++.+.|++++++++..+... ....+++|.+
T Consensus 227 ------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~ 296 (382)
T 4hvk_A 227 ------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK---RLPNNVNVRF 296 (382)
T ss_dssp ------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS---BCTTEEEEEE
T ss_pred ------cCccccCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc---cCCCEEEEEE
Confidence 24566789999999999899887654 5889999999999999999999999998766521 2234889999
Q ss_pred CCCChHHHHHHHhhhcCeEeccCCCCChhh------HhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 388 ENIHPTDIATLLDQQYGVATRSGHHCAQPL------HRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 388 ~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~------~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++.+..++.+.|.++ ||.+++|..|.... ...+|. ++++|++++.+++.+|++++++.|+++++++++
T Consensus 297 ~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 297 SYIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TTCCHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 888889999999988 99999998776532 123443 579999999999999999999999999987754
No 5
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=100.00 E-value=4.5e-44 Score=357.00 Aligned_cols=388 Identities=17% Similarity=0.188 Sum_probs=312.2
Q ss_pred hhhcCCCCccccc---------ccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhh-hHHHHHHHHHHH
Q 012718 49 HITRPDFPILHQE---------VYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATDEYELARK 118 (458)
Q Consensus 49 ~~~r~~f~~~~~~---------~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 118 (458)
..+|++|+..... .+++++.+|||+++.++.|+.+.+++.+.+..+......+ +..+ ..+....+++++
T Consensus 40 ~~~r~~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 118 (465)
T 3e9k_A 40 RHFRECFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYG-HEVGKRPWITGDESIVG 118 (465)
T ss_dssp GGGGGGEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGG-GTSSSSCGGGTTHHHHG
T ss_pred HHHHHhcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcc-cccCCccHHHhHHHHHH
Confidence 4578888875421 1113578999999999999999888888776543221111 1111 123445567899
Q ss_pred HHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE-----EEEeCCCC
Q 012718 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL-----KFLNLNDD 193 (458)
Q Consensus 119 ~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~-----~~v~~~~~ 193 (458)
.+++++|++++ +|++|+|+|+++++++.++.. ..+++++|+++.++|++...++...++..|+++ ..++.+.+
T Consensus 119 ~la~~~g~~~~-~v~~t~g~t~al~~~~~~~~~-~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~ 196 (465)
T 3e9k_A 119 LMKDIVGANEK-EIALMNALTVNLHLLMLSFFK-PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGE 196 (465)
T ss_dssp GGHHHHTCCGG-GEEECSCHHHHHHHHHHHHCC-CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTC
T ss_pred HHHHHcCCCcC-CEEEECCHHHHHHHHHHHhcc-ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCC
Confidence 99999999865 999999999999999998831 123456699999999999888888888889875 34466667
Q ss_pred CCCCHHHHHHhhc---CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 194 ESPDLDKLKEMLS---RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 194 ~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+.+|+++++++++ +++++|++++++|+||.+.|+++|.++|+++|+++|+|++|+.|..++++.++++|++++|+||
T Consensus 197 ~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K 276 (465)
T 3e9k_A 197 ETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYK 276 (465)
T ss_dssp SSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSS
T ss_pred CccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECccc
Confidence 8899999999996 6789999999999999999999999999999999999999999999888888889999999999
Q ss_pred CC--CCCceeEEEEeccccccCCCccccCcceE--eee--cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 271 MC--GPTGIGFLFGKSDLLSAMPPFLGGGEMIS--DVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 271 ~~--gp~g~G~l~~~~~~~~~l~~~~~g~~~~~--~~~--~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
++ ||.|+|++++++++++.+.+...||.... ..+ .....+...+.+|+.||++...++++.++++.+.+.++++
T Consensus 277 ~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~ 356 (465)
T 3e9k_A 277 YLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKA 356 (465)
T ss_dssp TTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHH
Confidence 76 67779999999999888887777765432 111 1123455667899999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHhcC----------CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCC
Q 012718 345 IHAYEMELAKYLYENLLSI----------PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
++++..++++++.+.|+++ +++++..+... ..++++++|.++ .+..++.+.|.++ ||.++.+
T Consensus 357 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~--~~~g~~~~~~~~-~~~~~l~~~L~~~-Gi~v~~~---- 428 (465)
T 3e9k_A 357 LRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV--EERGCQLTITFS-VPNKDVFQELEKR-GVVCDKR---- 428 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG--GGBCSCEEEEEC-CTTCCHHHHHHTT-TEECEEE----
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH--hhcccEEEEEec-CCHHHHHHHHHHC-CEEEecC----
Confidence 9999999999999999885 68998876522 345789999987 4567899999988 9998632
Q ss_pred hhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 415 QPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.++++|+|+ +.+++.+||+++++.|++++++..
T Consensus 429 --------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 429 --------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp --------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred --------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 268999999 799999999999999999997654
No 6
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=3.7e-42 Score=335.41 Aligned_cols=373 Identities=24% Similarity=0.351 Sum_probs=304.2
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhc-cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFINAS 127 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~ 127 (458)
+.+|++||.. ++.+|||.++.++.|+.+.+++.+.+.... .++ ..+..........+++++.+++++|.+
T Consensus 5 ~~~r~~f~~~-------~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~~~y~~~~~~~~~l~~~la~~~g~~ 75 (390)
T 1elu_A 5 TPSLHQFPGL-------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGP--FSIAANQHIQQLIAQLRQALAETFNVD 75 (390)
T ss_dssp -----CCGGG-------TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCS--SSHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCCC-------CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCC--cchhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 4568899976 678999999999999999999999887642 111 111111223567889999999999987
Q ss_pred CCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhh
Q 012718 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEML 205 (458)
Q Consensus 128 ~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l 205 (458)
++ +|++|+|+|+|+..++.++. +++||+|+++.++|++....+..+++..|++++.++.+ .++.+|++++++.+
T Consensus 76 ~~-~v~~~~g~t~a~~~~~~~~~---~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 151 (390)
T 1elu_A 76 PN-TITITDNVTTGCDIVLWGLD---WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL 151 (390)
T ss_dssp GG-GEEEESSHHHHHHHHHHHSC---CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTC
T ss_pred HH-HEEEeCChHHHHHHHHhCCC---CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhc
Confidence 65 89999999999999999883 67899999999999988777777778889999999987 56788999999999
Q ss_pred cCCceEEEEecccCcCcccccHHHHHHHHH----hcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEE
Q 012718 206 SRKTKLVVIHHISNMLASILPIEEIVHWSH----DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFL 280 (458)
Q Consensus 206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~----~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l 280 (458)
++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|++
T Consensus 152 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~ 231 (390)
T 1elu_A 152 GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGL 231 (390)
T ss_dssp CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEE
T ss_pred CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEE
Confidence 989999999999999999999999999999 99999999999999988877777789999999999 7889899999
Q ss_pred EEeccccccCCCccccCcceEeeecC-CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYE 358 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~ 358 (458)
++++++++.+.+...||......+.. ...+.....++..++++...+.++.++++.+...+ ++++.++.+++++++.+
T Consensus 232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~ 311 (390)
T 1elu_A 232 YIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWR 311 (390)
T ss_dssp EECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred EECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999998888776666554322110 01111223466778999988888989999887766 89999999999999999
Q ss_pred HHhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 359 NLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 359 ~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
.|++++++++..+.+ ..+++++|.++ +.+..++.+.|.++ ||.++++. .++++||+++.++++
T Consensus 312 ~L~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~-----------~~~~iRis~~~~~~~ 375 (390)
T 1elu_A 312 GLNQLPHVHCLATSA----PQAGLVSFTVDSPLGHRAIVQKLEEQ-RIYLRTIA-----------DPDCIRACCHYITDE 375 (390)
T ss_dssp HHHHSTTEEESCSSC----CSSSEEEEEECSSSCHHHHHHHHHHT-TEECEEET-----------TTTEEEEECCTTCCH
T ss_pred HHHhcCCcEEecCcc----ccccEEEEEcCCCCCHHHHHHHHHHC-CEEEEecC-----------CCCeEEEecccCCCH
Confidence 999988999876521 23778888885 56778899999877 99998764 157999999988999
Q ss_pred HHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNET 450 (458)
Q Consensus 438 ~di~~l~~~l~~~ 450 (458)
+|+++++++|+++
T Consensus 376 ~~i~~~~~~l~~~ 388 (390)
T 1elu_A 376 EEINHLLARLADF 388 (390)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
No 7
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=1.4e-42 Score=337.34 Aligned_cols=364 Identities=26% Similarity=0.408 Sum_probs=295.2
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
++|||+++.+++|+.+.+++.+.+.....+++. .+..+....+..+++++.+++++|++++ ++++|+|+|+|+.+++.
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~ 78 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFTSGATEANNLAII 78 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTE-EEEEESSHHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEcCchHHHHHHHHH
Confidence 479999999999999999999998765445432 3444455677889999999999999764 89999999999999999
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++.....++||+|++++++|++....+.. ++..|++++.+++++++.+|++++++.+++++++|++++++||||.+.|+
T Consensus 79 ~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l 157 (382)
T 4eb5_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKF-LQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPV 157 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHH-HTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCH
T ss_pred HHHhhccCCCCEEEECCCcchHHHHHHHH-HHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCH
Confidence 88100016899999999999977655443 33469999999998888899999999999899999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
++|.++|+++|++ |+|++|++|..++++...++|++++|+||++||.|+|+++++++. .+.+...++..
T Consensus 158 ~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~-------- 226 (382)
T 4eb5_A 158 EEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQ-------- 226 (382)
T ss_dssp HHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCT--------
T ss_pred HHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCc--------
Confidence 9999999999999 999999988776665555789999999999999899999999874 33333332211
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 308 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
..++..++++...+.++.++++.+.+ +++++.++.+++++++.+.|++++++++..+.. ...+++++|.+
T Consensus 227 ------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~~ 296 (382)
T 4eb5_A 227 ------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPE---KRLPNNVNVRF 296 (382)
T ss_dssp ------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS---SBCTTEEEEEE
T ss_pred ------cccccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcc---cCCCCEEEEEe
Confidence 12455678898888888888988766 588999999999999999999988998876532 12355888998
Q ss_pred CCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 388 ENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 388 ~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++.+..++.+.|.++ ||.+++|..|... ....+|. ++++|++++.+++++|+++++++|+++++++++
T Consensus 297 ~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 297 SYIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TTSCHHHHHHHHHHH-TCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHC-CEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 877788999999887 9999998765431 1122332 579999999889999999999999999987765
No 8
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=3.6e-42 Score=339.32 Aligned_cols=369 Identities=24% Similarity=0.348 Sum_probs=308.6
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHH--HhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYE--AYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+++.+|||+++.+++|+.+.+++.+.+. ....+++.+.+..+....+..+++++.+++++|++++ +|++|+|+|+|+
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt~a~ 98 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGATESD 98 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHHHHH
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEeCChHHHH
Confidence 5889999999999999999999998877 4445554435566667788889999999999999865 999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
.+++.++.....++||+|+++.++|++....+..+ +..|++++.++.++++.+|++++++.+++++++|++++++||||
T Consensus 99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 177 (423)
T 3lvm_A 99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIG 177 (423)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTC
T ss_pred HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCc
Confidence 99998872100237999999999999876655544 66799999999998899999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEe
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+||++|+.|+|+++++++..+.+.+...+++.
T Consensus 178 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~--- 254 (423)
T 3lvm_A 178 VVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGH--- 254 (423)
T ss_dssp BBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCT---
T ss_pred cccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcc---
Confidence 99999999999999999999999999998888888888999999999999999999999999888888766554432
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccE
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAAL 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 382 (458)
...+..++++...+.++.++++.+... ++++.++.+++++++.+.|++++++++..+... ....+
T Consensus 255 -----------~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~ 319 (423)
T 3lvm_A 255 -----------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH---GAPNI 319 (423)
T ss_dssp -----------TTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT---BCTTE
T ss_pred -----------cccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc---cCCCe
Confidence 134567889999999998999887765 789999999999999999999999998876531 22458
Q ss_pred EEEEeCCCChHHHHHHHhhhcCeEeccCCCCCh------hhHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 383 CSFNVENIHPTDIATLLDQQYGVATRSGHHCAQ------PLHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 383 v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~------~~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++|.+++.+..++.+.|.+ |.+++|.+|.+ .....+|. .+++|++++..++++|++++++.|++++
T Consensus 320 ~~~~~~~~~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~ 396 (423)
T 3lvm_A 320 LNVSFNYVEGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 396 (423)
T ss_dssp EEEEETTSCHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 8888888788888888875 88888887755 22223443 4799999999899999999999999999
Q ss_pred Hhhhc
Q 012718 452 SFFNV 456 (458)
Q Consensus 452 ~~~~~ 456 (458)
+++++
T Consensus 397 ~~~~~ 401 (423)
T 3lvm_A 397 GRLRD 401 (423)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 87765
No 9
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=1.5e-40 Score=323.24 Aligned_cols=363 Identities=26% Similarity=0.403 Sum_probs=289.5
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+|||+++.+++|+.+.+++.+.+.....+++. .+..++...+..+++++.+++++|++++ +|++|+|+|+|+.+++.+
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~ 80 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILKT 80 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHHHHHHHh
Confidence 89999999999999999999998764444432 3455666788889999999999998765 999999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+.....++||+|+++.++|++....+.. ++..|++++.++.++++.+|++++++.+++++++|++++++||||.++|++
T Consensus 81 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~ 159 (384)
T 1eg5_A 81 VAETFEKRKRTIITTPIEHKAVLETMKY-LSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVE 159 (384)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHH
T ss_pred hhhhccCCCCEEEECCCCchHHHHHHHH-HHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHH
Confidence 8210127899999999999976554432 356699999999988888999999999998999999999999999999999
Q ss_pred HHHHHHHhcC--cEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 229 EIVHWSHDVG--AKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 229 ~i~~l~~~~~--~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
+|.++|+++| +++|+|++|+++..++++...++|++++|+||++|+.|+|++++++++ .+.+...++..
T Consensus 160 ~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~------- 230 (384)
T 1eg5_A 160 DVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQ------- 230 (384)
T ss_dssp HHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCT-------
T ss_pred HHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcc-------
Confidence 9999999999 999999999988777777777899999999999999889999999875 23333222211
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
..++..++++...+.++..+++.+.+ .++++.++++++++++.+.|++ +++++..+... ....+++|.
T Consensus 231 -------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~---~~~~~~~~~ 298 (384)
T 1eg5_A 231 -------ERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEI---SLPNTLSVS 298 (384)
T ss_dssp -------TTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTS---BCTTEEEEE
T ss_pred -------cccccCCCCChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCccc---CCCCEEEEE
Confidence 12345678888888888888887654 5889999999999999999998 58888765321 124588888
Q ss_pred eCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 387 VENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+++.+..++.+.|.++ ||.+++|..|... ....+|. .+++||+++.+++++|+++++++|++++++++
T Consensus 299 ~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 299 FPNIRGSTLQNLLSGY-GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp CTTCCHHHHHHHHHHT-TEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred eCCCCHHHHHHHHhhC-CeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8877788999999877 9999998766431 1112232 36899999988999999999999999998765
Q ss_pred c
Q 012718 456 V 456 (458)
Q Consensus 456 ~ 456 (458)
+
T Consensus 378 ~ 378 (384)
T 1eg5_A 378 L 378 (384)
T ss_dssp -
T ss_pred h
Confidence 4
No 10
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-42 Score=329.68 Aligned_cols=355 Identities=17% Similarity=0.114 Sum_probs=287.5
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC--cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a 141 (458)
+-++--||.++.+++|++|++++.+++.+++.++... .+..+..+.+.++++|+.+++++|++++++|+| |+|+|++
T Consensus 10 ~~~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a 89 (377)
T 3e77_A 10 GVDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQ 89 (377)
T ss_dssp -----CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred ccCcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHH
Confidence 3456678999999999999999999988766654321 255677889999999999999999976558999 5899999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
+++++.++.. .++||++++...++.+. .|...+++.|..++.++.+.++..+++.++..+++++++|.+++.+|.|
T Consensus 90 ~n~a~~~l~~--~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 90 FSAVPLNLIG--LKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVH 165 (377)
T ss_dssp HHHHHHHHGG--GSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTT
T ss_pred HHHHHHhccC--CCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCch
Confidence 9999998821 13489999988888875 6788888889888888887666677888887888899999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceE
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
|.+.|+ +|+++|+++++|++|++|..|+|+++++ ++++|.||++||.|+|++++++++++.+.+...+.
T Consensus 166 G~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~---- 234 (377)
T 3e77_A 166 GVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSV---- 234 (377)
T ss_dssp TEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGG----
T ss_pred heEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCch----
Confidence 999998 4889999999999999999999998876 68899999889999999999999988887543321
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 380 (458)
.+...+. ......+||+...++++..+++++.+. |++++.++.+++++++.+.|++++++.+....+ ..++
T Consensus 235 ---~~~~~~~--~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~---~~rs 306 (377)
T 3e77_A 235 ---LEYKVQA--GNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEP---QNRS 306 (377)
T ss_dssp ---GCHHHHH--TTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCG---GGBC
T ss_pred ---hhHHHHh--hcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCH---HHcC
Confidence 0000000 112346899999999999999999998 799999999999999999999998888643222 2455
Q ss_pred c-EEEEEeCCCCh-----HHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 381 A-LCSFNVENIHP-----TDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 381 ~-~v~~~~~~~~~-----~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ +++|++++.+. ..+.+.+.++ ||.+++|..+ .+.+|+|++.++|++|||+++++|++++++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~-Gi~~~~g~~~----------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALEL-NMLSLKGHRS----------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHC-CcEEeCCCCc----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 79999997643 3566777777 9999887532 457999999999999999999999999875
No 11
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=2.4e-41 Score=330.91 Aligned_cols=360 Identities=22% Similarity=0.321 Sum_probs=280.1
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.++++|||+++.+++|+.+.+++.+.+.....++.. .+..+....+..+++++.+++++|++++ +|++|+|+|+|+.+
T Consensus 18 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~g~t~al~~ 95 (400)
T 3vax_A 18 GSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPD-ELIFTSGATESNNI 95 (400)
T ss_dssp ----CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHHH
T ss_pred cCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEeCCHHHHHHH
Confidence 478899999999999999999999999876656543 3444555677888999999999999865 99999999999999
Q ss_pred HHHHcCCCCC----CCCC-EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 145 VAYSWGLSNL----KSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 145 ~~~~l~~~~~----~~g~-~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
++.++ . ++|| .|+++.++|++....+..+ ...|++++.+++++++.+|++++++++++++++|++++++|
T Consensus 96 ~~~~l----~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n 170 (400)
T 3vax_A 96 ALLGL----APYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNN 170 (400)
T ss_dssp HHHTT----HHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCT
T ss_pred HHHHH----HHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCC
Confidence 99977 4 6899 9999999999877666654 45799999999998899999999999999999999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEE-Eecccc----ccCCCcc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF-GKSDLL----SAMPPFL 294 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~-~~~~~~----~~l~~~~ 294 (458)
|||.+.|+++|.++|+++|+++|+|++|+.+..+.++... +|++++|+||++|+.|+|+++ ++++.+ ..+.+..
T Consensus 171 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 249 (400)
T 3vax_A 171 ETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIM 249 (400)
T ss_dssp TTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSS
T ss_pred CceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCcee
Confidence 9999999999999999999999999999999888777777 999999999998998999999 988322 2334433
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
.++.. ..++..++++...+.++.++++.+.+ +++++.++.+++++++.+.|+ .+++++..+...
T Consensus 250 ~~~~~--------------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~ 313 (400)
T 3vax_A 250 FGGGQ--------------ERKLRPGTLPVPLIMGLAEAAKIFEA-EHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDH 313 (400)
T ss_dssp CSSCT--------------GGGTSCSCCCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTS
T ss_pred cCCCc--------------eeeeecCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCccc
Confidence 32221 13466788999999999899988766 689999999999999999999 889998766521
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEee-CCCCCHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASL-HFYNTKEDVDE 442 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~-~~~~t~~di~~ 442 (458)
..+++++|.+++.+..++.+.|. + ||.+++|..|... ....+|. ++++||++ +.+++++|+++
T Consensus 314 ---~~~~~~~~~~~~~~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~ 388 (400)
T 3vax_A 314 ---VVPHILNLSFEDVDAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEE 388 (400)
T ss_dssp ---BCTTEEEEECTTCCHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---------
T ss_pred ---CCCCEEEEEeCCCCHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHH
Confidence 23458899998888899999999 7 9999998766542 2223343 38999999 98899999999
Q ss_pred HHHHHHHHHHh
Q 012718 443 FIHALNETVSF 453 (458)
Q Consensus 443 l~~~l~~~~~~ 453 (458)
++++|++++++
T Consensus 389 ~~~~l~~~~~~ 399 (400)
T 3vax_A 389 LARGVAKLKPS 399 (400)
T ss_dssp -----------
T ss_pred HHHHHHHHhcc
Confidence 99999988764
No 12
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=2.1e-40 Score=323.38 Aligned_cols=364 Identities=17% Similarity=0.153 Sum_probs=291.0
Q ss_pred CCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 012718 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV 133 (458)
Q Consensus 54 ~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~ 133 (458)
+||.+ ++.+|||+++.+++|+.+.+++.+.+.. ..++......+++++.+++++|++++ +++
T Consensus 2 ~fp~~-------~~~~yl~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~-~v~ 63 (392)
T 2z9v_A 2 RYPEH-------ADPVITLTAGPVNAYPEVLRGLGRTVLY----------DYDPAFQLLYEKVVDKAQKAMRLSNK-PVI 63 (392)
T ss_dssp CCCTT-------SCCSEECSSSCCCCCHHHHHHTTSCCCC----------TTSHHHHHHHHHHHHHHHHHTTCSSC-CEE
T ss_pred CcccC-------CCcceeecCCCcCCCHHHHHHHhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCC-EEE
Confidence 57776 6779999999999999999988765421 11234567788999999999999754 999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh--cCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML--SRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l--~~~~~~ 211 (458)
+|+|+|+|+.+++.++ +++||+|++++++|++.. +..+++..|++++.++.++++.+|++++++.+ .+++++
T Consensus 64 ~t~g~t~a~~~~~~~~----~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 137 (392)
T 2z9v_A 64 LHGEPVLGLEAAAASL----ISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITV 137 (392)
T ss_dssp ESSCTHHHHHHHHHHH----CCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCE
T ss_pred EeCCchHHHHHHHHHh----cCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcE
Confidence 9999999999999988 689999999999999762 55666777999999999888889999999999 457899
Q ss_pred EEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccC
Q 012718 212 VVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 212 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l 290 (458)
|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|++++++++++.+
T Consensus 138 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l 217 (392)
T 2z9v_A 138 VSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKM 217 (392)
T ss_dssp EEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHH
T ss_pred EEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHh
Confidence 99999999999999999999999999999999999999887777766789999999999 67788999999999877665
Q ss_pred CCccccCcceEeeecCCC-CCCC-CCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 291 PPFLGGGEMISDVFLDHS-TFAD-PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~-~~~~-~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+...|.+. .+.+.. .+.. ...++..++++...+.++.++++.+.+.|++++.++++++++++.+.|+++ ++++
T Consensus 218 ~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~ 293 (392)
T 2z9v_A 218 KANPLAPRA---SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSV 293 (392)
T ss_dssp HTCTTSCCS---STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred hhccCCCCc---eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 432211000 000000 0000 013455788999999999999999888889999999999999999999887 8777
Q ss_pred eCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHA 446 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~ 446 (458)
..+... ...+.+++|.++ +.+..++.+.|.+++||.+++|..+ ..++++|+++ +++++.+|+++++++
T Consensus 294 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~--------~~~~~lRi~~~~~~~~~~~i~~~~~~ 363 (392)
T 2z9v_A 294 WAASDS--IASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGE--------TLGKLTRIGHMGPTAQPIYAIAALTA 363 (392)
T ss_dssp SSSSGG--GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG--------GTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred ccCCcc--ccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCC--------CCCCeEEEeCcccccCHHHHHHHHHH
Confidence 653211 123568899986 5678889999987669999887632 1267999996 447899999999999
Q ss_pred HHHHHHhhh
Q 012718 447 LNETVSFFN 455 (458)
Q Consensus 447 l~~~~~~~~ 455 (458)
|++++++++
T Consensus 364 l~~~~~~~~ 372 (392)
T 2z9v_A 364 LGGAMNAAG 372 (392)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999988654
No 13
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=3.6e-42 Score=330.85 Aligned_cols=346 Identities=15% Similarity=0.100 Sum_probs=266.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC--cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~~ 144 (458)
.+||++++++++|++|++++.+++.++..++... .+..+..+.+.++++|+.+++++|++++++|+| |+|+|+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 3899999999999999999999887766555321 334566678899999999999999975457998 6999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCC-CCHHHHHHhhcCCceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDES-PDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~-~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
++.++ +++||++++...++.+. +|...+++.| +++.++++ ++|. ++++++++.+++++++|++++.+|.|
T Consensus 107 ai~~l----~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~t 179 (386)
T 3qm2_A 107 VPLNL----LGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETID 179 (386)
T ss_dssp HHHHH----CTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTT
T ss_pred HHHhc----cCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCc
Confidence 99998 67899988777777765 6777888889 99999988 5664 78888888899999999999999999
Q ss_pred ccc-ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcce
Q 012718 222 ASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 222 G~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
|.+ .|+++|. +|+++++|++|++|..|+|+++++ ++++|.||++||.|+|++++++++++.+.+......
T Consensus 180 G~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~-- 250 (386)
T 3qm2_A 180 GIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSIL-- 250 (386)
T ss_dssp TEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGG--
T ss_pred CEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHH--
Confidence 996 8888884 799999999999999999999875 677999998899999999999999888776432110
Q ss_pred EeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCcCc
Q 012718 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQ 378 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~~~ 378 (458)
+...+ .......||+|+..++++..+++++.+. |++++.++.+++++++.+.|+++ ++ ....++ ..
T Consensus 251 -----~~~~~--~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~----~~ 318 (386)
T 3qm2_A 251 -----DYTVL--NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQ----AN 318 (386)
T ss_dssp -----CHHHH--HHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCG----GG
T ss_pred -----HHHHH--hhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCH----HH
Confidence 00000 0112335799999999999999999998 79999999999999999999988 54 322221 23
Q ss_pred cc-cEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 379 RA-ALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 379 ~~-~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++ .+++|.+++ .+ .++...|.++ ||.++.|..| .+.+|+|++.++|++|||++++.|+++.++
T Consensus 319 rs~~iv~f~~~~~~~~-~~~~~~L~~~-gI~~~~g~~~----------~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 319 RSRMNVPFQLADNTLD-KVFLEESFAA-GLHALKGHRV----------VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp BCSSEEEEEESSGGGH-HHHHHHHHHT-TEECCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCcccc-HHHHHHHHHC-CCEEeCCCCC----------cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 44 489999984 33 5777788877 9999888755 356999999999999999999999998865
No 14
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.2e-40 Score=319.77 Aligned_cols=370 Identities=15% Similarity=0.192 Sum_probs=297.2
Q ss_pred ccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 012718 44 SVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF 123 (458)
Q Consensus 44 ~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 123 (458)
..+|+..+|++||.+ +..+|||+.+.+++++.+.+++.+.+.. .++....+..+++++.++++
T Consensus 3 ~~~~~~~~r~~f~~~-------~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~ 65 (386)
T 2dr1_A 3 IMEFEEAFKEVYEMV-------KPKYKLFTAGPVACFPEVLEIMKVQMFS----------HRSKEYRKVHMDTVERLREF 65 (386)
T ss_dssp --CCHHHHHHHHHHH-------SCCSEECCSSSCCCCHHHHHHTTSCCCC----------TTSHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHhhc-------CccceeecCCCcCCcHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHH
Confidence 456889999999976 4468999999999999998887665321 11223467788899999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHH
Q 012718 124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKE 203 (458)
Q Consensus 124 ~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~ 203 (458)
+|.+..+++++|+|+|+|+..++.++ +++||+|++++++|++. .+...++..|++++.++.++++.+|++++++
T Consensus 66 ~g~~~~~~v~~~~g~t~a~~~~~~~l----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~ 139 (386)
T 2dr1_A 66 LEVEKGEVLLVPSSGTGIMEASIRNG----VSKGGKVLVTIIGAFGK--RYKEVVESNGRKAVVLEYEPGKAVKPEDLDD 139 (386)
T ss_dssp HTCSSSEEEEESSCHHHHHHHHHHHH----SCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHH
T ss_pred hCCCCCcEEEEeCChHHHHHHHHHHh----hcCCCeEEEEcCCchhH--HHHHHHHHhCCceEEEecCCCCCCCHHHHHH
Confidence 99973337999999999999999988 67999999999999964 2566777889999999998888899999999
Q ss_pred hh--cCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEE
Q 012718 204 ML--SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFL 280 (458)
Q Consensus 204 ~l--~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l 280 (458)
.+ .+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+||+++ |.|+|++
T Consensus 140 ~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~ 219 (386)
T 2dr1_A 140 ALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIG 219 (386)
T ss_dssp HHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEE
T ss_pred HHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEE
Confidence 99 46889999999999999999999999999999999999999999888777777789999999999665 5579999
Q ss_pred EEeccccccCCCcc-ccCcceEeeecCCCCC-CCCC-CccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFL-GGGEMISDVFLDHSTF-ADPP-SRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYL 356 (458)
Q Consensus 281 ~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~-~~~~-~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l 356 (458)
++++++++.+.+.. .++.. +...+ .... .++..++++...+.++..+++.+... +++++.++++++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l 293 (386)
T 2dr1_A 220 AFSERFLEIAEKMPERGWYF------DIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMV 293 (386)
T ss_dssp EECHHHHHHHTTCTTCCSTT------CHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHhcCCCCceEE------eHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99998776664321 11110 00000 0000 12445688888888999999988877 7899999999999999
Q ss_pred HHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 357 YENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 357 ~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.+.|+++ ++++..+.. ...+.++++.++ +.+..++.+.|.++ ||.+++|..+ ..++++|++++.++
T Consensus 294 ~~~L~~~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~--------~~~~~iRi~~~~~~ 360 (386)
T 2dr1_A 294 REGVREI-GLDILAEPG---HESPTITAVLTPPGIKGDEVYEAMRKR-GFELAKGYGS--------VKEKTFRIGHMGYM 360 (386)
T ss_dssp HHHHHHT-TCCBSSCTT---CBCSSEEEEECCTTCCHHHHHHHHHHT-TEECEECCGG--------GTTTEEEEECCSSC
T ss_pred HHHHHHc-CCeeCcCcc---ccCCceEEEEcCCCCCHHHHHHHHHHC-CeEEecCccc--------cCCCEEEEECCCCC
Confidence 9999988 877765532 123668899987 56788999999999 9999987632 12579999999989
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 012718 436 TKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~ 455 (458)
+++|+++++++|+++++++.
T Consensus 361 ~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 361 KFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988753
No 15
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=1.3e-39 Score=321.89 Aligned_cols=376 Identities=25% Similarity=0.322 Sum_probs=285.5
Q ss_pred cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCc
Q 012718 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE 131 (458)
Q Consensus 52 r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~ 131 (458)
+++|+.. .+.+|||+++.+++|+.+.+++.+.+.....+++ ..+..+....+..+++++.+++++|++++ +
T Consensus 10 ~~~~~~~-------~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~ 80 (432)
T 3a9z_A 10 GSVESPP-------NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPS-SSYVAGRKAKDIINTARASLAKMIGGKPQ-D 80 (432)
T ss_dssp ---------------CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTT-CSSHHHHHHHHHHHHHHHHHHHHHTCCGG-G
T ss_pred ccccCCC-------CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCc-cCcHHHHHHHHHHHHHHHHHHHHcCCCcC-e
Confidence 4667775 6789999999999999999999999876555554 33444555677888999999999999755 8
Q ss_pred EEEeCChhHHHHHHHHHcCCCC----CCCCC-------------EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-C
Q 012718 132 IVFTKNATEAINLVAYSWGLSN----LKSGD-------------EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-D 193 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~----~~~g~-------------~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~ 193 (458)
|++|+|+|+|+.+++.++.... .++|| .|+++..+|+++..++..+++..|++++.+++++ +
T Consensus 81 v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~ 160 (432)
T 3a9z_A 81 IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVN 160 (432)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTT
T ss_pred EEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCccc
Confidence 9999999999999998872000 03675 5555555666666677777777899999999886 6
Q ss_pred CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcC----------cEEEEeccccCCcccCCCCCCCCcE
Q 012718 194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG----------AKVLVDACQSVPHMVVDVQGLDADF 263 (458)
Q Consensus 194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~----------~~vivD~a~~~g~~~~~~~~~~~d~ 263 (458)
+.+|+++|++.+++++++|++++++||||.+.|+++|.++|+++| +++|+|++|+.|..++++...++|+
T Consensus 161 ~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~ 240 (432)
T 3a9z_A 161 GQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDF 240 (432)
T ss_dssp SSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSE
T ss_pred CCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCE
Confidence 788999999999989999999999999999999999999999999 9999999999887766665567999
Q ss_pred EEecccCCCCCCceeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 264 LVASSHKMCGPTGIGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 264 ~~~s~~K~~gp~g~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
+++|+||++||. +|+++++++. ...+.+...|++. ..+++.++++...+.++.++++++.+ ++
T Consensus 241 ~~~s~~K~~g~~-~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~a~~aal~~~~~-~~ 304 (432)
T 3a9z_A 241 LTIVGHKFYGPR-IGALYVRGVGKLTPLYPMLFGGGQ--------------ERNFRPGTENTPMIAGLGKAADLVSE-NC 304 (432)
T ss_dssp EEEEGGGTTCCS-CEEEEETTBTTTBCCCCSCCSSCG--------------GGGTSCSCCCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEehhHhcCCc-ceEEEEccccccCCcCceeecCCc--------------cccccCCCcCHHHHHHHHHHHHHHHh-hH
Confidence 999999998877 9999999876 4556555444432 13466789999988888889998766 58
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEE--EeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChh--
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIR--IYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQP-- 416 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~-- 416 (458)
+++.++++++++++.+.|+++++++ +..+.+. ....+.+++|.+++ .+..++.+.+ . ++.++.|..|...
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l--~-~i~~~~G~~~~~~~~ 380 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPG-VERLPNTCNFSIQGSQLRGYMVLAQC--Q-TLLASVGASCHSDHE 380 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTT-CCBCTTEEEEEECSTTCCHHHHHHHC--S-SEECBSSCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCc-ccCCCCEEEEEeCCCCCcHHHHHHHh--c-CeEEeccccccCCCC
Confidence 8999999999999999998764543 3343111 01223488888875 3455666554 3 7888877766542
Q ss_pred -----hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 417 -----LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 417 -----~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
....+|. .+++||+++.+++++|++++++.|+++++++++
T Consensus 381 ~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 381 DRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp TSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 1222343 379999999989999999999999999987653
No 16
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=100.00 E-value=4.3e-39 Score=316.60 Aligned_cols=374 Identities=19% Similarity=0.239 Sum_probs=290.6
Q ss_pred chhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC
Q 012718 46 SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125 (458)
Q Consensus 46 ~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g 125 (458)
+.++.+|++||.. ++.+|||+++.++.|+.+.+++.+.+.....++... .....+..+..+++++.+++++|
T Consensus 14 ~~~~~~r~~f~~~-------~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g 85 (416)
T 1qz9_A 14 DSLAPLRQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIG 85 (416)
T ss_dssp CTTGGGGGGBCCC-------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTT
T ss_pred chhHHHHHhCCCC-------CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHcC
Confidence 3456788999986 678999999999999999999999887532222110 01111234667889999999999
Q ss_pred CCCCCcEEEeCChhHHHHHHHHHcCCCCC----CCCCE-EEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCCCCCCH
Q 012718 126 ASDSGEIVFTKNATEAINLVAYSWGLSNL----KSGDE-VILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDL 198 (458)
Q Consensus 126 ~~~~~~v~~t~g~t~a~~~~~~~l~~~~~----~~g~~-vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~~~~d~ 198 (458)
++++ +|++|+|+++++..++.++. .+ ++||+ |+++.+.|++...++..+++.. |++++.++. +
T Consensus 86 ~~~~-~v~~~~g~t~al~~al~~~~--~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~ 155 (416)
T 1qz9_A 86 ARDG-EVVVTDTTSINLFKVLSAAL--RVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------P 155 (416)
T ss_dssp CCTT-SEEECSCHHHHHHHHHHHHH--HHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------G
T ss_pred CCcc-cEEEeCChhHHHHHHHHhhc--ccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------H
Confidence 9765 89999999999988887761 12 68886 5666678887766666666666 999999986 6
Q ss_pred HHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCce
Q 012718 199 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGI 277 (458)
Q Consensus 199 ~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~ 277 (458)
+++++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||+ +++.|+
T Consensus 156 ~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~ 235 (416)
T 1qz9_A 156 EELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS 235 (416)
T ss_dssp GGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC
T ss_pred HHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC
Confidence 7899999889999999999999999999999999999999999999999998877666556799999999995 456777
Q ss_pred -eEEEEeccccccCCCccccCcceEeee--cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012718 278 -GFLFGKSDLLSAMPPFLGGGEMISDVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354 (458)
Q Consensus 278 -G~l~~~~~~~~~l~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~ 354 (458)
|++++++++++.+.+...||......+ .....+.....++..++++...++++.++++.+...+++++.++++++++
T Consensus 236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 315 (416)
T 1qz9_A 236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 315 (416)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999998888876655542211000 00111122234667889999999999999998876789999999999999
Q ss_pred HHHHHHhcC-C--CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee
Q 012718 355 YLYENLLSI-P--NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL 431 (458)
Q Consensus 355 ~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~ 431 (458)
++.+.|.++ + ++++..+... ...++++++.+++ ..++.+.|.++ ||.+... ..+++|+++
T Consensus 316 ~l~~~L~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~--~~~l~~~l~~~-gi~~~~~------------~~~~lRis~ 378 (416)
T 1qz9_A 316 LFIELVEQRCAAHELTLVTPREH--AKRGSHVSFEHPE--GYAVIQALIDR-GVIGDYR------------EPRIMRFGF 378 (416)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSG--GGBCSEEEEECTT--HHHHHHHHHTT-TEECEEE------------TTTEEEEEC
T ss_pred HHHHHHHhhccCCCeEEeCCCCH--HHcCCEEEEecCC--HHHHHHHHHhC-CcEeccC------------CCCeEEEeC
Confidence 999999885 6 7887765321 1235688998874 67899999988 9987432 267999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHHhh
Q 012718 432 H-FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 432 ~-~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ ++++++|+++++++|++++++.
T Consensus 379 ~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 379 TPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHHHhcc
Confidence 8 5899999999999999998764
No 17
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=4.7e-39 Score=313.88 Aligned_cols=369 Identities=16% Similarity=0.157 Sum_probs=289.5
Q ss_pred cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCc
Q 012718 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE 131 (458)
Q Consensus 52 r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~ 131 (458)
+..||-+ .++.+|+++.+..++++.+.+++.+.+.. + ......+..+++++.+++++|.+++++
T Consensus 9 ~~~~~~~------~~~~~~~~~~g~~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~~ 72 (393)
T 2huf_A 9 AVLREPL------VTPNKLLMGPGPSNAPQRVLDAMSRPILG---------H-LHPETLKIMDDIKEGVRYLFQTNNIAT 72 (393)
T ss_dssp GGGGSCC------CCCCCEECSSSCCCCCHHHHHHTTSCCCC---------T-TSHHHHHHHHHHHHHHHHHHTCCCSEE
T ss_pred hhhhccc------CCCCeEEecCCCCCCCHHHHHHHHhhhcc---------C-CCHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 4456666 35667888887788899988887664321 1 122346778899999999999975347
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-Cce
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTK 210 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~ 210 (458)
|++|+|+|+|+..++.++ +++||+|++++++|++. .+..+++..|++++.+++++++.+|++++++.+++ +++
T Consensus 73 i~~~~g~t~a~~~~~~~~----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 146 (393)
T 2huf_A 73 FCLSASGHGGMEATLCNL----LEDGDVILIGHTGHWGD--RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPS 146 (393)
T ss_dssp EEESSCHHHHHHHHHHHH----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCS
T ss_pred EEEcCcHHHHHHHHHHHH----hCCCCEEEEECCCcchH--HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCc
Confidence 999999999999999988 67999999999999974 34556677899999999988888999999999988 899
Q ss_pred EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccccc
Q 012718 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 289 (458)
+|++++++||||.+.|+++|.++|+++|+++|+|++|+++..++++...++|++++|+|| ++|+.|+|++++++++++.
T Consensus 147 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~ 226 (393)
T 2huf_A 147 VLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVER 226 (393)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHH
T ss_pred EEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHH
Confidence 999999999999999999999999999999999999999888777777789999999999 5778999999999877665
Q ss_pred CCCcc---ccCcceEeeecCCCCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 290 MPPFL---GGGEMISDVFLDHSTFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 290 l~~~~---~g~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+.... .++....... ...+. ....+++.++++...+.++.++++.+.+.+++++.++++++++++.+.|+++ +
T Consensus 227 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 303 (393)
T 2huf_A 227 YKRRNTKVKVYYWDMSLV--GDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-G 303 (393)
T ss_dssp HHTCSSCCSCGGGCHHHH--HHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HhhcCCCCceEEEchHHH--HhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 44321 1100000000 00010 1124566789999999999999998877789999999999999999999988 8
Q ss_pred EEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC-CCCHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF-YNTKEDVDEF 443 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~-~~t~~di~~l 443 (458)
+++..+.. ...+.++++.++ +.+..++.+.|.+++||.+++|..| ..++++||+++. .++++|++++
T Consensus 304 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~--------~~~~~~Ri~~~~~~~~~e~i~~~ 372 (393)
T 2huf_A 304 FELYADPK---DRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGP--------TAGQVFRIGLMGQNATTERVDRV 372 (393)
T ss_dssp CCBSSCGG---GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGG--------GTTTEEEEECCGGGCSHHHHHHH
T ss_pred CeeccCcc---ccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCccc--------ccCCEEEEEcccCcCCHHHHHHH
Confidence 77665431 112348889886 5678889999876459999987643 126799999944 3578999999
Q ss_pred HHHHHHHHHhhhc
Q 012718 444 IHALNETVSFFNV 456 (458)
Q Consensus 444 ~~~l~~~~~~~~~ 456 (458)
+++|++++++++.
T Consensus 373 ~~~l~~~~~~~~~ 385 (393)
T 2huf_A 373 LQVFQEAVAAVKP 385 (393)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987653
No 18
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.8e-38 Score=309.79 Aligned_cols=369 Identities=17% Similarity=0.190 Sum_probs=289.1
Q ss_pred cchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc
Q 012718 45 VSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124 (458)
Q Consensus 45 ~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 124 (458)
......+|+.||.+. .+.+|+++.+.+++++.+.+++.+.+.. .++....+..+++++.+++++
T Consensus 17 ~~~~~~~r~~~~~~~------~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~ 80 (393)
T 1vjo_A 17 ISINDNQRLQLEPLE------VPSRLLLGPGPSNAHPSVLQAMNVSPVG----------HLDPAFLALMDEIQSLLRYVW 80 (393)
T ss_dssp CCCCCTTCCCCCSCC------CCCCEECSSSCCCCCHHHHHHHSSCCCC----------TTSHHHHHHHHHHHHHHHHHH
T ss_pred eeecchhhhcCCccC------CccceeccCCCCCCCHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHh
Confidence 334466788999762 4468999999999999999888765321 112235677888999999999
Q ss_pred CCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHh
Q 012718 125 NASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 125 g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~ 204 (458)
|.++++++++|+|+|+|+..++.++ +++||+|++++++|++. .+...++..|++++.++.++++.+|++++++.
T Consensus 81 g~~~~~~v~~t~g~t~al~~~~~~~----~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~ 154 (393)
T 1vjo_A 81 QTENPLTIAVSGTGTAAMEATIANA----VEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWGEVFSLEELRTA 154 (393)
T ss_dssp TCCCSCEEEESSCHHHHHHHHHHHH----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHH
T ss_pred CCCCCcEEEEeCchHHHHHHHHHhc----cCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecCCCCCCCHHHHHHH
Confidence 9964227999999999999999998 68999999999999963 35677788899999999988888999999999
Q ss_pred hcC-CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC-CCCceeEEEE
Q 012718 205 LSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFG 282 (458)
Q Consensus 205 l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~ 282 (458)
+++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|++|..++++...++|++++|+||++ +|.|+|++++
T Consensus 155 l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~ 234 (393)
T 1vjo_A 155 LETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTM 234 (393)
T ss_dssp HHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEE
T ss_pred HhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEE
Confidence 988 89999999999999999999999999999999999999999988888887888999999999954 5667999999
Q ss_pred eccccccCCCc---cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 283 KSDLLSAMPPF---LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 283 ~~~~~~~l~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++++++.+... ..++....... ..| ....++..|+++...+.++..+++.+.+.+++++.++++++++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (393)
T 1vjo_A 235 SSRAIEKLQRRRTKVANWYLDMNLL---GKY-WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWER 310 (393)
T ss_dssp CHHHHHHHHTCSSCCSCSTTCHHHH---HHH-HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCCCCCceecCcHhh---hhh-hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 99876654211 11110000000 000 001234445889999999999999887768899999999999999999
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTK 437 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~ 437 (458)
|+++ ++++..+.. .....++++.++ +.+..++.+.|.+++||.+++|..+ ..++++||++ +..+++
T Consensus 311 L~~~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~~iRis~~~~~~~~ 378 (393)
T 1vjo_A 311 LEDI-GLSLHVEKE---YRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE--------LAGKVWRVGLMGFNSRK 378 (393)
T ss_dssp HHHT-TCCBSSCGG---GBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG--------GTTTEEEEECCGGGCSH
T ss_pred HHHc-CCcccCCcc---ccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccc--------cCCCEEEEeCCccCChH
Confidence 9988 877765431 012457888886 5677889999987669999988743 1267999995 444577
Q ss_pred HHHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNETV 451 (458)
Q Consensus 438 ~di~~l~~~l~~~~ 451 (458)
+++++++++|++++
T Consensus 379 ~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 379 ESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 78999999999876
No 19
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=2.1e-39 Score=308.82 Aligned_cols=345 Identities=17% Similarity=0.147 Sum_probs=271.2
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCc---chhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGI---HFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAIN 143 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~ 143 (458)
.+|+-+++++++|++|++++.+++..++.++. +. .+.+..+.+.++++|+.+++++|++++++|+| |+|+|++++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~-s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n 83 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGY-SIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFA 83 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSS-CGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCc-eeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHH
Confidence 35666778889999999999999876665543 32 23456788999999999999999975558988 999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCC--CCHHHHHHhhcCCceEEEEecccCcC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~--~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
+++.++ + +||++.+...++.+. .|...+++.|++++.++.++++. ++++. + |++++++|.+++.+|.|
T Consensus 84 ~~~~~~----~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~t 153 (361)
T 3m5u_A 84 MIPMNL----A-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIY 153 (361)
T ss_dssp HHHHHH----C-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTT
T ss_pred HHHHhc----C-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCc
Confidence 999998 4 677653333334444 56777888899999999988774 56666 4 88899999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceE
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
|.+.|. +++ +|+++++|++|++|..|+|+++ .|++++|.||++||.|+|++++++++++.+.+...+.
T Consensus 154 G~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~---- 221 (361)
T 3m5u_A 154 GTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS---- 221 (361)
T ss_dssp TEECSS-----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCG----
T ss_pred ceeCCc-----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCc----
Confidence 999772 444 4999999999999999999985 7999999999889999999999998876665411100
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCcCcc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQR 379 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~~~~ 379 (458)
+.+...+. ......+|++...++++.++++++.+. |++++.++.+++++++.+.|++++++ ++..++. .+.
T Consensus 222 --~~~~~~~~--~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~---~rs 294 (361)
T 3m5u_A 222 --MLNYLTHA--ENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKK---DRS 294 (361)
T ss_dssp --GGCHHHHH--HTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGG---GBC
T ss_pred --eeehHHHh--hcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHH---HcC
Confidence 00000000 012334899999999999999999999 89999999999999999999999765 6654321 122
Q ss_pred ccEEEEEeCC-CC-hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 380 AALCSFNVEN-IH-PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 380 ~~~v~~~~~~-~~-~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
..+++|.+++ .. ..++...|.++ ||.++.|..+ .+.+|+|++.++|.+|||+++++|+++.++
T Consensus 295 ~~ivsf~~~~~~~~~~~~~~~L~~~-gI~~~~g~~~----------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 295 LMNVSFNIAKNKDLEPLFVKEAEEA-GMIGLKGHRI----------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp SSEEEEEESSCTTHHHHHHHHHHHT-TEECCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCchhhhHHHHHHHHHC-CCEEecCCCc----------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 3589999986 22 24688888877 9999887643 356999999999999999999999999875
No 20
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=1.4e-38 Score=309.47 Aligned_cols=349 Identities=17% Similarity=0.215 Sum_probs=280.8
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHHHHcC
Q 012718 72 DNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWG 150 (458)
Q Consensus 72 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~~~l~ 150 (458)
-+.++.++++.+.+++.+.+. ...+....+..+++++.+++++|++.+ +++++|+|+|+|+. ++.++
T Consensus 6 ~~~gp~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~- 73 (384)
T 3zrp_A 6 LHVGPTTIKEDVLVAGLENNV----------GFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL- 73 (384)
T ss_dssp CCSSCSCCCHHHHHHTTCCSC----------CTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG-
T ss_pred ccCCCCCCCHHHHHHhhcccc----------ccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh-
Confidence 344556778888888765432 112334567888999999999999862 38999999999999 88777
Q ss_pred CCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHH
Q 012718 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+++||+|++++++|++. .+..+++..|++++.+++++++.+|++++++.+++ ++++|++++++||||.+.|+++
T Consensus 74 ---~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 148 (384)
T 3zrp_A 74 ---LKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD 148 (384)
T ss_dssp ---CCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred ---cCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence 78999999999999864 46677778899999999998888999999999988 8999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccC-CCccccCcceEeeecCC
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAM-PPFLGGGEMISDVFLDH 307 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l-~~~~~g~~~~~~~~~~~ 307 (458)
|.++|+++|+++|+|++|+.+..+.++...++|++++|+||+ .|+.|+|+++++++.++.+ .+..... .+.+.
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~-----~~~~~ 223 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAG-----YYLDL 223 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCC-----STTCH
T ss_pred HHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCc-----ccccH
Confidence 999999999999999999999988888888899999999995 5688899999999887665 2211000 00000
Q ss_pred CCCCCCC------CccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 308 STFADPP------SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 308 ~~~~~~~------~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
..+.... ..+..|+++...+.++.++++.+...+++++.++++++++++.+.|+++ ++++..+... ...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~ 300 (384)
T 3zrp_A 224 RNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPE--SYSNT 300 (384)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGG--GBCSS
T ss_pred HHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCccc--ccCcc
Confidence 0000000 1122368999999999999999988889999999999999999999998 8877655411 12355
Q ss_pred EEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 382 LCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 382 ~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+++|.+++.+..++.+.|.++ ||.+++|.++. .+++|++++.+++++|+++++++|++++++++
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~---------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 301 VTGVILKVADPQKVLAGTVNE-GVEFAPGVHPA---------FKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp EEEEECSSSCHHHHHHHHHTT-TCCCEECCCTT---------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC-CEEEecCCCCC---------cCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 888999887888999999998 99999886432 17899999988999999999999999998764
No 21
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=3.1e-38 Score=309.86 Aligned_cols=361 Identities=14% Similarity=0.147 Sum_probs=287.2
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
...++...++.++++.+.+++.+.. .........+..+++++.+++++|.+..+.+++++|+++|++.++
T Consensus 12 ~~~~~~~pgp~~~~~~v~~a~~~~~----------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~ 81 (411)
T 3nnk_A 12 PSRLLMGPGPINADPRVLRAMSSQL----------IGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAIL 81 (411)
T ss_dssp CCCEEESSSCCCCCHHHHHHHTSCC----------CCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHH
T ss_pred ccceeecCCCCCCCHHHHHHhhccc----------cccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHH
Confidence 3456777777788888888876432 111223455778899999999999987634889999999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASIL 225 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~ 225 (458)
.++ +++||+|++++++|++.. +...++..|++++.++.+.++.+|++++++.+++ ++++|++++++||||.+.
T Consensus 82 ~~~----~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~ 155 (411)
T 3nnk_A 82 VSA----IRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQ 155 (411)
T ss_dssp HHH----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred HHh----cCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceec
Confidence 998 789999999999998652 5667788899999999988898999999999987 899999999999999999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCcc------ccCc
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFL------GGGE 298 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~------~g~~ 298 (458)
|+++|.++|+++|+++|+|++|+.+..+++....++|++++|+|| ++|+.|+|++++++++++.+.+.. .|++
T Consensus 156 ~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 235 (411)
T 3nnk_A 156 PLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDA 235 (411)
T ss_dssp CCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTT
T ss_pred cHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccc
Confidence 999999999999999999999999998888888899999999999 588999999999998765543221 1111
Q ss_pred ceEeeecCC-CCCCC--------CCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 299 MISDVFLDH-STFAD--------PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 299 ~~~~~~~~~-~~~~~--------~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
......... ..+.. ...++..++++...+.++.++++.+...|++++.++++++++++.+.|+++ ++++.
T Consensus 236 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (411)
T 3nnk_A 236 HRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETF 314 (411)
T ss_dssp CCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred cccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeC
Confidence 100000000 00000 134567889999999999999999988889999999999999999999987 87776
Q ss_pred CCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHAL 447 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l 447 (458)
.+.. ...+.+++|.++ +.+..++.+.|.+++||.+++|... ..++++|+++ +..++++|+++++++|
T Consensus 315 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~~~i~~~~~~l 383 (411)
T 3nnk_A 315 GDLK---HKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGP--------LHGKVWRIGTMGYNARKDCVMTTLSAL 383 (411)
T ss_dssp SCGG---GBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGG--------GTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred CCcc---cccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCC--------CCCCEEEEeCccCcCCHHHHHHHHHHH
Confidence 5432 123568899986 6678899999877669999877311 1257999998 6666899999999999
Q ss_pred HHHHHhhh
Q 012718 448 NETVSFFN 455 (458)
Q Consensus 448 ~~~~~~~~ 455 (458)
+++++++.
T Consensus 384 ~~~l~~~~ 391 (411)
T 3nnk_A 384 EAVLNYLK 391 (411)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99998653
No 22
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=1.7e-38 Score=305.13 Aligned_cols=341 Identities=16% Similarity=0.156 Sum_probs=278.0
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
|+.++++.++++.+.+++.+.+.. ..++...+..+++++.+++++|++++ ++++|+|+|+|+.+++.++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~-~i~~~~g~t~a~~~~~~~~ 71 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEGE-VLILTGSGTLAMEALVKNL 71 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSE-EEEEESCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC----------ccCHHHHHHHHHHHHHHHHHhCCCCc-eEEEcCchHHHHHHHHHhc
Confidence 677888888999999988765421 12334566788999999999999854 8999999999999999998
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+++||+|++++++|++.. +..+++..|++++.+++++++.+|++++++ +++++|++++++||||.+.|+++
T Consensus 72 ----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~ 142 (352)
T 1iug_A 72 ----FAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPA 142 (352)
T ss_dssp ----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHH
T ss_pred ----cCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHH
Confidence 679999999999999764 455667789999999998888889988876 67899999999999999999999
Q ss_pred HHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 230 IVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 230 i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
|.++|+++ |+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|+++++++.++.+.+ .++.. +
T Consensus 143 i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~--~~~~~------~ 214 (352)
T 1iug_A 143 LARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP--RGYYL------D 214 (352)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC--CSSTT------C
T ss_pred HHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC--CCcee------e
Confidence 99999999 999999999998887777766679999999999 7888899999999987766654 11110 0
Q ss_pred CCCC-CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 307 HSTF-ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 307 ~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
...+ .....++..++++...+.++.++++.+... ++++.++++++++++.+.|+++ ++++..+. ..+.+++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----~~~~~~~~ 287 (352)
T 1iug_A 215 LARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKR-----FSPAVAAF 287 (352)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSS-----BCTTCEEE
T ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccc-----cCCeEEEE
Confidence 0000 000123446788998888888999887765 8899999999999999999988 88876542 13668999
Q ss_pred EeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 386 NVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 386 ~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.++ +.+..++.+.|.++ ||.+++|..+ ..++++|++++.+++++|+++++++|+++++++
T Consensus 288 ~~~~~~~~~~~~~~l~~~-gi~v~~~~~~--------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 288 YLPEGVPYARVKEAFAQR-GAVIAGGQGP--------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp ECCTTCCHHHHHHHHHTT-TEECEECCGG--------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHC-CEEEEeCCCc--------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 987 56788999999988 9999987621 125799999999889999999999999998865
No 23
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=2.7e-38 Score=310.84 Aligned_cols=353 Identities=15% Similarity=0.182 Sum_probs=279.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE-EeCChhHHHHHHHHHcCCC
Q 012718 74 AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV-FTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~-~t~g~t~a~~~~~~~l~~~ 152 (458)
.++..+++.+.+++.+. ..........+..+++++.+++++|.+++ .++ +++|+|+|+..++.++
T Consensus 17 p~p~~~~~~v~~a~~~~----------~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~~~~~~s~t~al~~~~~~l--- 82 (416)
T 3isl_A 17 PGPVEVDPRVLRVMSTP----------VVGQFDPAFTGIMNETMEMLRELFQTKNR-WAYPIDGTSRAGIEAVLASV--- 82 (416)
T ss_dssp SSSCCCCHHHHHHTTSC----------CCCTTSHHHHHHHHHHHHHHHHHTTCCCS-EEEEEESCHHHHHHHHHHHH---
T ss_pred CCCcCcCHHHHHHhccc----------CCCCccHHHHHHHHHHHHHHHHHhCCCCC-cEEEecCcHHHHHHHHHHHh---
Confidence 34445677777666441 11122234567788999999999999865 554 8999999999999988
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEecccCcCcccccHHHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+++||+|++++++|++.. +...++..|++++.+++++++.+|+++++++++ .++++|++++++||||.+.|+++|.
T Consensus 83 -~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 159 (416)
T 3isl_A 83 -IEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIG 159 (416)
T ss_dssp -CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHH
T ss_pred -cCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHH
Confidence 789999999999999642 566778889999999999889999999999998 5899999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCcc---ccCcce-------
Q 012718 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFL---GGGEMI------- 300 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~---~g~~~~------- 300 (458)
++|+++|+++|+|++|+.+..++++...++|++++|+|| ++|+.|+|++++++++++.+.+.. .||...
T Consensus 160 ~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~ 239 (416)
T 3isl_A 160 EACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALS 239 (416)
T ss_dssp HHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC-----------------
T ss_pred HHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhcc
Confidence 999999999999999999998888888899999999999 588999999999998876665432 233221
Q ss_pred -----EeeecCCCCCC--CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 301 -----SDVFLDHSTFA--DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 301 -----~~~~~~~~~~~--~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
...+.+...+. ....++..++++...+.++.++++.+...|++++.++++++++++.+.|++. ++++..+..
T Consensus 240 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 318 (416)
T 3isl_A 240 GNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDS 318 (416)
T ss_dssp -CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGG
T ss_pred CCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCcc
Confidence 11110000000 0235667889999999999999999988889999999999999999999986 887765542
Q ss_pred CCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH-HHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED-VDEFIHALNETV 451 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d-i~~l~~~l~~~~ 451 (458)
...+.+++|.++ +.+..++.+.|.+++||.+++|... ..++++|++++.+++.+| +++++++|++++
T Consensus 319 ---~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 319 ---CKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGP--------LAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp ---GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCST--------TTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ---ccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCC--------CCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 123468899986 6778899999987669999987521 126799999977677777 999999999999
Q ss_pred Hhhh
Q 012718 452 SFFN 455 (458)
Q Consensus 452 ~~~~ 455 (458)
+++.
T Consensus 388 ~~~~ 391 (416)
T 3isl_A 388 LRHN 391 (416)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8653
No 24
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=4.6e-38 Score=303.22 Aligned_cols=353 Identities=16% Similarity=0.169 Sum_probs=278.2
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
++.+.++.++|+.+.+++.+.+.... .+....+....+..+++++.+++++|.+..+++++|+|+|+|+.+++.++
T Consensus 6 ~~~~p~p~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l 81 (362)
T 3ffr_A 6 IYFTPGPSELYPTVRQHMITALDEKI----GVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC 81 (362)
T ss_dssp EEECSSSCCCCTTHHHHHHHHHHTTT----TTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH
T ss_pred eeccCCCcCCCHHHHHHHHHHhcCCc----cCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc
Confidence 44455566788888888888765421 11122344566888899999999999975458999999999999999998
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
.++ .+++..+.|++. .+...++..|++++.++.+.++.+|+++++ +++++++|++++++||||.+.|+++
T Consensus 82 ----~~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~ 151 (362)
T 3ffr_A 82 ----VEK--KSFHCVNGSFSK--RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVED 151 (362)
T ss_dssp ----CSS--EEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHH
T ss_pred ----cCC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHH
Confidence 445 566666555552 455667788999999999888889999998 7789999999999999999999999
Q ss_pred HHHHHHhc-CcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 230 IVHWSHDV-GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 230 i~~l~~~~-~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
|.++|+++ |+++|+|++|+.+..+.++.+ .|++++|+||+++ +.|+|++++++++++.+.+...|++... .+.+.
T Consensus 152 i~~la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~-~~~~~ 228 (362)
T 3ffr_A 152 INTFRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIG-TYHTI 228 (362)
T ss_dssp HTTSGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCC-STTSH
T ss_pred HHHHHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCc-ccccH
Confidence 99999999 999999999999988777655 8999999999777 8999999999988777765554433211 11110
Q ss_pred CCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 308 STFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 308 ~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
..+. ........++++...+.++..+++++...|++++.++.+++++++.+.|+++|++++..+.+. .....+++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~~~~~~ 306 (362)
T 3ffr_A 229 PSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAK--LRSMTTIVAN 306 (362)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGG--GBCSSEEEEE
T ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChh--hcCCceEEEe
Confidence 0000 001123368899999999999999888878999999999999999999999999998764321 2235688999
Q ss_pred eCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 387 VENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+++ +..++.+.|.++ ||.+++|..+ ..++++|+|++.+++++|+++++++|++++
T Consensus 307 ~~~-~~~~~~~~l~~~-gi~~~~g~~~--------~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 307 TTM-LPGEINKILEPF-DMAVGAGYGS--------KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ESS-CHHHHHHHHGGG-TEEEEECSGG--------GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCC-CHHHHHHHHHHC-CeEEecCccc--------cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 988 788999999999 9999987533 126799999999999999999999998764
No 25
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=1.1e-37 Score=304.53 Aligned_cols=366 Identities=14% Similarity=0.169 Sum_probs=283.8
Q ss_pred cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCc
Q 012718 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE 131 (458)
Q Consensus 52 r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~ 131 (458)
++.||-+ .++.+++.+.+..++++.+.+++.+.+.. . .........+++++.+++++|.+++++
T Consensus 8 ~~~~~~~------~~~~~~~~~~~p~~~~~~v~~a~~~~~~~-------~---~~~~~~~~~~~l~~~la~~~~~~~~~~ 71 (396)
T 2ch1_A 8 ASLRNPL------IIPEKIMMGPGPSNCSKRVLTAMTNTVLS-------N---FHAELFRTMDEVKDGLRYIFQTENRAT 71 (396)
T ss_dssp GGGSSCC------CCCCCBCCSSSSCCCCHHHHHHTTSCCCC-------T---TCHHHHHHHHHHHHHHHHHHTCCCSCE
T ss_pred cccCCCC------CCCcceeecCCCCCCCHHHHHHhcccccc-------C---CChhHHHHHHHHHHHHHHHhCCCCCcE
Confidence 3346665 24556677777778888888887654210 1 122234567889999999999975437
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-Cce
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTK 210 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~ 210 (458)
|++|+|+|+++..++.++ +++||+|++++++|++. .+...++..|++++.++.++++.+|++++++.+++ +++
T Consensus 72 v~~~~g~t~al~~~~~~~----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 145 (396)
T 2ch1_A 72 MCVSGSAHAGMEAMLSNL----LEEGDRVLIAVNGIWAE--RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPK 145 (396)
T ss_dssp EEESSCHHHHHHHHHHHH----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred EEECCcHHHHHHHHHHHh----cCCCCeEEEEcCCcccH--HHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCC
Confidence 999999999999999998 68999999999999974 33456778899999999988888999999999987 899
Q ss_pred EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccccc
Q 012718 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 289 (458)
+|++++++||||.++|+++|.++|+++|+++|+|++|++|..++++..+++|++++|+|| ++++.|+|+++++++.++.
T Consensus 146 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~ 225 (396)
T 2ch1_A 146 CLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDV 225 (396)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHH
T ss_pred EEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHh
Confidence 999999999999999999999999999999999999999988888888889999999999 5668889999999877655
Q ss_pred CCCc-------cccCcceEeeecCCCCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 290 MPPF-------LGGGEMISDVFLDHSTFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 290 l~~~-------~~g~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+... ..+...... .+. ....++..++++...+.++.++++.+.+.+++++.++++++++++.+.|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (396)
T 2ch1_A 226 IRNRRTKSKVFYWDLLLLGN------YWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLG 299 (396)
T ss_dssp HHTCSSCCSCGGGCHHHHHH------HTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccceEechHHHHH------hhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4321 111000000 010 01234567889998888888999987766899999999999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKED 439 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~d 439 (458)
++ ++++..+... ...+.+++|.++ +.+..++.+.|.+++||.+++|..+ ..++++||++ +...+++|
T Consensus 300 ~~-g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~e~ 368 (396)
T 2ch1_A 300 KM-GLDIFVKDPR--HRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP--------TFGKAWRVGIMGECSTVQK 368 (396)
T ss_dssp HH-TCCBSSCSGG--GBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGG--------GTTTEEEEECCGGGCSHHH
T ss_pred HC-CCeeccCCcc--ccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccc--------cCCCEEEEECCCCcCCHHH
Confidence 88 8777654320 012348889886 6678899999876559999887532 1267999999 45568999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 012718 440 VDEFIHALNETVSFFNV 456 (458)
Q Consensus 440 i~~l~~~l~~~~~~~~~ 456 (458)
+++++++|++++++++.
T Consensus 369 i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 369 IQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999987643
No 26
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=1.1e-37 Score=303.96 Aligned_cols=359 Identities=16% Similarity=0.203 Sum_probs=284.8
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
.++.+.++.++++.+.+++.+... . .......+..+++++.+++++|.+..++|++|+|+++|+..++.+
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~--------~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~ 93 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMI--------G--HMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFN 93 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCC--------C--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHhccccc--------C--cccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHh
Confidence 356666777888888888765311 1 112234567788999999999998654699999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l 227 (458)
+ +++||+|+++.++|++. .+...++..|++++.++.++++.+|++++++.+++ ++++|++++++||||.+.|+
T Consensus 94 ~----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 167 (393)
T 3kgw_A 94 L----LEPGDSFLTGTNGIWGM--RAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPL 167 (393)
T ss_dssp H----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred c----CCCCCEEEEEeCCchhH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccH
Confidence 8 78999999999888754 34666778899999999988888999999999988 89999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++|.++|+++|+++|+|++|+.|..++++...++|+++.|+|| ++|+.|+|++++++++++.+.....++... +.+
T Consensus 168 ~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~---~~~ 244 (393)
T 3kgw_A 168 DGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSF---YTD 244 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCS---TTC
T ss_pred HHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCce---eec
Confidence 9999999999999999999998888888888889999999999 567888999999998876665433222110 000
Q ss_pred C----CCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 307 H----STFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 307 ~----~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
. ..+. ....++..++++...+.++.++++.+.+.+++++.++++++++++.+.|+++ ++++..+... ...+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~ 321 (393)
T 3kgw_A 245 ITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPE--IRLPT 321 (393)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGG--GBCSS
T ss_pred HHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChh--hcCCe
Confidence 0 0000 1123566789999999999999999888889999999999999999999998 8777643321 12234
Q ss_pred EEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 382 LCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 382 ~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
+++|.++ +.+..++.+.|.+++||.+++|..+ ..++++|+++ +...+++|+++++++|+++++++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 322 ITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGP--------TEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHHCEECBCCCGG--------GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCEEEeCCccc--------CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 6778886 5678899999987669999987632 1267999998 55459999999999999999887653
No 27
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=7.9e-38 Score=300.45 Aligned_cols=345 Identities=16% Similarity=0.176 Sum_probs=274.0
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhHHHHHHHHHc
Q 012718 71 LDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 71 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~a~~~~~~~l 149 (458)
+.+.++.++|+.+.+++.+.+.. ..++...+..+++++.+++++|.+ +.+++++|+|+|+|+.+++.++
T Consensus 3 ~~~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~ 72 (353)
T 2yrr_A 3 LLTPGPTPIPERVQKALLRPMRG----------HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL 72 (353)
T ss_dssp ECSSSSCCCCHHHHGGGGSCCCC----------TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC
T ss_pred cCCCCCCCCCHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh
Confidence 34455667888888888765421 122345677889999999999986 2348999999999999999877
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~ 228 (458)
.+ |+|++++++|++. .+...++..|++++.++.++++.+|++++++.+++ ++++|++++++||||.+.|++
T Consensus 73 ----~~--d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 144 (353)
T 2yrr_A 73 ----DR--GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAE 144 (353)
T ss_dssp ----SC--CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred ----cC--CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHH
Confidence 33 7899999999976 45667788899999999988888999999999988 899999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
+|.++|+++|+++|+|++|+++..+.++...++|++++|+|| ++|+.|+|+++++++.++.+.. ..++........
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~-- 221 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVA-- 221 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHH--
T ss_pred HHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHh--
Confidence 999999999999999999998877666655678999999999 6778889999999988776652 111100000000
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 308 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
.. .......++++...+.++.++++.+.+.+++++.++++++++++.+.|+++ ++++..+.. ..+.+++|.+
T Consensus 222 -~~--~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~~~~~ 293 (353)
T 2yrr_A 222 -EH--WERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKAS----PLPTVLVVRP 293 (353)
T ss_dssp -HH--HTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSS----BCTTEEEEEC
T ss_pred -hh--hhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCcc----CCCeEEEEEC
Confidence 00 001234568898888888899999888789999999999999999999988 888876431 2355778998
Q ss_pred C-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH-HHHHHHHHHHHh
Q 012718 388 E-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD-EFIHALNETVSF 453 (458)
Q Consensus 388 ~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~-~l~~~l~~~~~~ 453 (458)
+ +.+..++.+.|.++ ||.+++|..+ ..++++|++++.+++.+|++ +++++|++++++
T Consensus 294 ~~~~~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 294 PEGVDADRLVRALYAE-GVAVAGGIGP--------TRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp CTTCCHHHHHHHHHHT-TEECEECCGG--------GTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHC-CEEEeCCccc--------cCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 6 56788999999998 9999988633 12578999998778999999 999999998764
No 28
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=5.9e-38 Score=303.61 Aligned_cols=345 Identities=19% Similarity=0.209 Sum_probs=268.8
Q ss_pred CCeEEecCC-CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHH-HHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK-VAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++|||.+ +.+++++.+.+++.+++...........+..++...+..+++++. +++++|.+ +|++|+|+|+|+.
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKF 83 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHHH
Confidence 678999994 577889999999998876432100000122223345667789999 99999987 8999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe--CCCCCCCCHHHHHHhhc-----CCceEEEEec
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN--LNDDESPDLDKLKEMLS-----RKTKLVVIHH 216 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~--~~~~~~~d~~~l~~~l~-----~~~~~v~~~~ 216 (458)
.++.++ +++||+|++++++|++.... ++..|++++.++ .++++.+|++++++.++ +++++|++++
T Consensus 84 ~~~~~~----~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 84 AVMHSL----AKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp HHHHHH----CCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred HHHHHH----hCCCCEEEEccCcchHHHHH----HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 999998 67999999999999976443 566799999999 77778899999999998 7899999999
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccccc-CCCcc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSA-MPPFL 294 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~-l~~~~ 294 (458)
++||||.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+|| +.++.++|++++++++++. +.+..
T Consensus 156 ~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~ 235 (371)
T 2e7j_A 156 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSE 235 (371)
T ss_dssp SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCS
T ss_pred CCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccc
Confidence 999999999999999999999999999999999887666666678999999999 5566779999999998777 76544
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHHhcCCCEEEeCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE--MELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~--~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
.++.. ...++.++++..++.++.++++++.. ++.+++ +++++++.+.|+++ ++++..+.
T Consensus 236 ~~~~~--------------~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 296 (371)
T 2e7j_A 236 KYKNK--------------EVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDN 296 (371)
T ss_dssp SCTTS--------------BGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSS
T ss_pred cCccc--------------ccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCC
Confidence 32111 01234678888888888888887765 667778 89999999999888 88887653
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhc---CC-CCeEE-EeeCCC-CCHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL---GV-NASAR-ASLHFY-NTKEDVDEFIHA 446 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~---g~-~~~lR-is~~~~-~t~~di~~l~~~ 446 (458)
. .+++++++.++ +..++.+.|.++ ||.+.+ ..+ .. |. ++++| ++++.+ ++++|+++++++
T Consensus 297 ~----~~~~~~~~~~~--~~~~~~~~l~~~-gi~~~~-~~~------~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 297 P----HNHDLMFFHAE--VLYEISKKAKGG-RFFLYR-ELK------SRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp S----CCSSEEEEECH--HHHHHHHHSSSG-GGHHHH-HHH------HTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred C----ccCceEEEECC--CHHHHHHHHHHC-CEEEEe-ccc------cccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 2 13678999886 567888888877 998875 211 11 21 57899 999988 899999999999
Q ss_pred HHHHHHhh
Q 012718 447 LNETVSFF 454 (458)
Q Consensus 447 l~~~~~~~ 454 (458)
|+++++++
T Consensus 363 l~~~~~~~ 370 (371)
T 2e7j_A 363 FKEIIEKY 370 (371)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99998764
No 29
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=1.8e-36 Score=293.73 Aligned_cols=350 Identities=13% Similarity=0.101 Sum_probs=271.4
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE-EeCChhHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV-FTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~-~t~g~t~a~~~~~~ 147 (458)
.+.-+.++.++|+.+.+++.+.+. . ..+....+..+++++.+++++|++.+.+++ +|+|+|+|+++++.
T Consensus 20 ~~~~~pgp~~~~~~v~~a~~~~~~-----~-----~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~ 89 (376)
T 3f0h_A 20 MLNFTVGPVMSSEEVRAIGAEQVP-----Y-----FRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM 89 (376)
T ss_dssp CEECSSSSCCCCHHHHHHHTSCCC-----C-----CSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred ceeecCCCCCCcHHHHHHhcCCCC-----C-----CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence 334444566788888888765421 1 112344577888999999999998543555 58999999999999
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++ +++||+|+++++.|++. .+...+...|++++.++.+.++.+|++++++.+++++++|++++++||||.+.|+
T Consensus 90 ~~----~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l 163 (376)
T 3f0h_A 90 NC----FTKKDKVLVIDGGSFGH--RFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDT 163 (376)
T ss_dssp HH----CCTTCCEEEEESSHHHH--HHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCH
T ss_pred hc----cCCCCeEEEEeCChhhH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCH
Confidence 88 68999999999988864 2345677789999999998888899999999998899999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++|.++|+++|+++|+|++|+.+..++++...++|++++|+||+++ +.|+|++++++++++.+.+....... .+
T Consensus 164 ~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~-----~~ 238 (376)
T 3f0h_A 164 MMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMY-----FD 238 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCST-----TC
T ss_pred HHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCcee-----ec
Confidence 9999999999999999999999888777766779999999999776 88999999999877665432211000 00
Q ss_pred CCCC-CCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEE
Q 012718 307 HSTF-ADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 307 ~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~ 384 (458)
...+ ..........+++...++++.++++++.+. +++++.++.+++++++.+.|+++ ++++..+.. ...++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~-----~~~~~~ 312 (376)
T 3f0h_A 239 LKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESP-----ANGVTS 312 (376)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSB-----BTTEEE
T ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCcccc-----CceEEE
Confidence 0000 000011224467777778888999988887 58999999999999999999988 777765432 244666
Q ss_pred EEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 385 FNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+..++.+..++.+.|.+++||.+++|.. ...++++|++++.+++++|+++++++|++++++
T Consensus 313 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~--------~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 313 VHPTTANAYDIFLKLKDEYGIWICPNGG--------EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp EEESSSCHHHHHHHHHHHSSEECEECCG--------GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHHhCCEEEecCcc--------ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 6666777889999999877999988731 012679999999889999999999999998864
No 30
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=1.1e-35 Score=286.92 Aligned_cols=351 Identities=15% Similarity=0.186 Sum_probs=268.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHH-HHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKAT-DEYELARKKVAAFINASDS-GEIVFTKNATEAINLV 145 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~ 145 (458)
.+.|+.+ +...++.+.+++.+.+ + +. ..... ...+++++.+++++|.+.. +++++|+|+|+|+.++
T Consensus 5 ~~~~~~g-p~~~~~~v~~a~~~~~---------~-~~-~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~ 72 (366)
T 1m32_A 5 YLLLTPG-PLTTSRTVKEAMLFDS---------C-TW-DDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAV 72 (366)
T ss_dssp CEECSSS-SCCCCHHHHHTTCCCC---------C-TT-SHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHH
T ss_pred cccccCC-CcCCCHHHHHHHhhhh---------c-CC-CHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHH
Confidence 3556555 4467888888876631 1 11 11223 5677899999999993311 3799999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcC-CCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--CceEEEEecccCcCc
Q 012718 146 AYSWGLSNLKSGDEVILTV-AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLA 222 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG 222 (458)
+.++ .++||+|++.+ +.|++. +...++..|++++.+++++++.+|++++++.+++ ++++|++++++||||
T Consensus 73 ~~~~----~~~gd~vi~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG 145 (366)
T 1m32_A 73 LGSA----LGPQDKVLIVSNGAYGAR---MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTG 145 (366)
T ss_dssp HHHS----CCTTCCEEEEESSHHHHH---HHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTT
T ss_pred HHHh----cCCCCeEEEEeCCCccHH---HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcc
Confidence 9998 57889887776 445432 3455677799999999988888999999999976 578999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceE
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+|| ++|+.|+|++++++++++.+.....++....
T Consensus 146 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 1m32_A 146 MLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDL 225 (366)
T ss_dssp EECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCH
T ss_pred eecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccH
Confidence 999999999999999999999999999888777777789999999999 5588889999999988777764321110000
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 380 (458)
.... ..+. .......++++...+.++.++++.+...| ++++.++++++++++.+.|+++ ++++..+.. ...+
T Consensus 226 ~~~~--~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~---~~~~ 298 (366)
T 1m32_A 226 YAQW--RCME-DNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDE---LHSP 298 (366)
T ss_dssp HHHH--HHHH-HTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGG---GBCS
T ss_pred HHHH--hhhc-ccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCch---hcCc
Confidence 0000 0000 00011235788888889999999988877 8899999999999999999987 776654421 0123
Q ss_pred cEEEEEeC---CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 381 ALCSFNVE---NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 381 ~~v~~~~~---~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.++++.++ +.+..++.+.|.++ ||.+++|..| ..+++|++++.+++++|+++++++|+++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~---------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 299 IITAFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVS---------QSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp SEEEEECCCCTTCCHHHHHHHHHHT-TEECEECCCS---------SSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEEcCccCCCCHHHHHHHHHHC-CEEEECCcCC---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 48899987 56788999999988 9999988754 15799999999899999999999999987654
No 31
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=100.00 E-value=3.8e-36 Score=289.98 Aligned_cols=348 Identities=14% Similarity=0.186 Sum_probs=264.1
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCC--CcchhhhHHHHHHHHHHHHHHHHcCCCCCCc-EEEeCChhHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHR--GIHFLSAKATDEYELARKKVAAFINASDSGE-IVFTKNATEAIN 143 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~-v~~t~g~t~a~~ 143 (458)
+.+|+++.+..++|+.+.+++.+++..+..+... .....+....+..+++++.+++++|++++++ +++|+|+|++++
T Consensus 3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred cceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 4589999999999999999999887543211100 0122334556778899999999999975325 577899999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--C-C-CCCHHHHHHhhcCCceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--D-E-SPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~-~-~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
.++.++ +++||+|++.++.|++. .+...++..| +++.++++. + + .+|+++++ +++++++|++++++|
T Consensus 83 ~~~~~l----~~~gd~vl~~~~~~~~~--~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n 153 (362)
T 2c0r_A 83 MIPMNF----LKEGQTANYVMTGSWAS--KALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNET 153 (362)
T ss_dssp HHHHHH----CCTTCEEEEEECSHHHH--HHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEET
T ss_pred HHHHhc----CCCCCeEEEEecCcHhH--HHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcC
Confidence 999998 68999999887776653 2345667779 999998862 2 2 34665553 677899999999999
Q ss_pred cCccc-ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCc
Q 012718 220 MLASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 220 ~tG~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
|||.. .|+++| +|+++++|++|+.+..++++.+. |++++|+||++||.|+|++++++++++.+.+......
T Consensus 154 ~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~ 225 (362)
T 2c0r_A 154 IEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTML 225 (362)
T ss_dssp TTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGG
T ss_pred ccceeccccccc------CCCEEEEEChhhccCCccchhHC--cEEEEeccccccCcCcEEEEEcHHHHhhccccCchHH
Confidence 99996 567776 89999999999999887776654 9999999999999999999999998877764211000
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCc
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEH 376 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~ 376 (458)
+...+. ......+|++...+.++.++++.+.+. +++++.++.+++++++.+.|++++++ ++..++.
T Consensus 226 -------~~~~~~--~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--- 293 (362)
T 2c0r_A 226 -------RYDTYV--KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVD--- 293 (362)
T ss_dssp -------CHHHHH--HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGG---
T ss_pred -------hHHHHh--hccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChH---
Confidence 000000 011234789999999999999988776 68999999999999999999998535 7654321
Q ss_pred CccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 377 VQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 377 ~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
....++++|.+++ .+..++.+.|.++ ||.+.+|..+ .+++|+|++.+++++|++++++.|++++++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~L~~~-gi~~~~g~~~----------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 294 SRSDMNITFRLASEELEKEFVKASEQE-GFVGLKGHRS----------VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp GBCSSEEEEECSCHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcCCcchHHHHHHHHHHC-CCeeccCCCC----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1235688898873 4567899999888 9988877532 3579999999999999999999999988653
No 32
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=3.6e-35 Score=285.42 Aligned_cols=357 Identities=17% Similarity=0.175 Sum_probs=265.6
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC---CCcEEEeCChhHHHHHHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD---SGEIVFTKNATEAINLVA 146 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~---~~~v~~t~g~t~a~~~~~ 146 (458)
++...++..+++.+.+++.+.... + ..........++++.++++++... .++|++|+|+|+|+.+++
T Consensus 7 ~~~~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~ 76 (385)
T 2bkw_A 7 TLLIPGPIILSGAVQKALDVPSLG---------H-TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA 76 (385)
T ss_dssp EECSSSSCCCCHHHHHTTSCCCCC---------T-TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred eeecCCCcCchHHHHHHHhccccc---------c-CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHH
Confidence 445555667788888887654211 1 122234456678888888887641 248999999999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHhhcC-CceEEEEecccCcCccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASI 224 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~ 224 (458)
.++.. .+++||+|++++..+++.. +...++..|++++.+++ ++++.+|++++++++++ ++++|++++++||||.+
T Consensus 77 ~~~~~-~~~~gd~vlv~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 153 (385)
T 2bkw_A 77 SNFIL-SKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVL 153 (385)
T ss_dssp HHHSC-TTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred HHHhc-cCCCCCeEEEEcCCcchHH--HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeE
Confidence 98821 1278999988855443321 23456678999999999 77888999999999987 88999999999999999
Q ss_pred ccHHHHHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccc-cCCC------cc
Q 012718 225 LPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLS-AMPP------FL 294 (458)
Q Consensus 225 ~~l~~i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~-~l~~------~~ 294 (458)
.|+++|.++|+++ |+++|+|++|+.+..++++...++|++++|+|| ++||.|+|+++++++.++ .+.+ ..
T Consensus 154 ~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~ 233 (385)
T 2bkw_A 154 SDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHG 233 (385)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSC
T ss_pred cCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCc
Confidence 9999999999999 999999999999888777777889999999999 667889999999988766 5531 11
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-hcCCCEEEeCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL-LSIPNIRIYGPKP 373 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L-~~~~~~~~~~~~~ 373 (458)
.++.... .......+.. ......++++...++++.++++.+.+.+++++.++++++++++.+.| +++ ++++..+.+
T Consensus 234 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~ 310 (385)
T 2bkw_A 234 YFSSLRR-WTPIMENYEA-GKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYP 310 (385)
T ss_dssp STTCHHH-HHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSS
T ss_pred eeecHHH-HhhHHHhhhc-cCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCc
Confidence 1110000 0000000000 01122468899899999999999887789999999999999999999 888 888765332
Q ss_pred CCcC-ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe-eCC---CCCHHHHHHHHHHHH
Q 012718 374 SEHV-QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS-LHF---YNTKEDVDEFIHALN 448 (458)
Q Consensus 374 ~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis-~~~---~~t~~di~~l~~~l~ 448 (458)
. . ..+++++|.+++ ..++.+.|.++ ||.+++|..+.. .++++|++ ++. .++++|+++++++|+
T Consensus 311 ~--~~~~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~g~~~~~-------~~~~iRis~~~~~~~~~~~e~i~~~~~~l~ 378 (385)
T 2bkw_A 311 S--NMSAHGLTAVYVAD--PPDVIAFLKSH-GVVIAGGIHKDI-------GPKYIRIGHMGVTACNKNLPYMKNCFDLIK 378 (385)
T ss_dssp S--TTBCSSCEEEECSC--HHHHHHHHHHT-TEECBCCCCTTT-------GGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred c--cccCCceEEEecCC--HHHHHHHHHHC-CeEEeCCCCccc-------CCCEEEEEccccccccCCHHHHHHHHHHHH
Confidence 1 1 236689999875 77899999887 999998764311 15689999 652 479999999999999
Q ss_pred HHHHhh
Q 012718 449 ETVSFF 454 (458)
Q Consensus 449 ~~~~~~ 454 (458)
++++++
T Consensus 379 ~~~~~~ 384 (385)
T 2bkw_A 379 LALQRK 384 (385)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 987654
No 33
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=100.00 E-value=6.2e-36 Score=288.26 Aligned_cols=346 Identities=16% Similarity=0.175 Sum_probs=263.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchh---hhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCh-hHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL---SAKATDEYELARKKVAAFINASDSGEIVFTKNA-TEAINL 144 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~-t~a~~~ 144 (458)
+|+++.+..++|+.+.+++.+.+... .++..+.+.. .....+..+++++.+++++|++.+++|++|+|+ |+|+..
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~ 82 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM 82 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHH
Confidence 56666666789999999999887543 3333222211 445667888999999999999743589999998 999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHH-hhcCCceEEEEecccCcCc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKE-MLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~-~l~~~~~~v~~~~~~n~tG 222 (458)
++.++... -++||.|+++.++|.+ ...++..| +++.+++++ ++.+|++++++ .+++++++|++++++||||
T Consensus 83 ~~~~l~~~-~~~g~~vi~~~~~~~~-----~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG 155 (360)
T 1w23_A 83 LPMNLLTK-GTIGNYVLTGSWSEKA-----LKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYG 155 (360)
T ss_dssp HHHHHCCT-TCEEEEEECSHHHHHH-----HHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTT
T ss_pred HHHHhcCC-CCcccEEEecchhHHH-----HHHHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcc
Confidence 99888321 1346677877776664 22356679 999999875 56679999998 8888999999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEe
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
.++| ++++++|+++|+|++|+.+..++++.++ |++++|+||++||.|+|++++++++++.+.+.. ++...
T Consensus 156 ~~~~-----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~-- 225 (360)
T 1w23_A 156 TQYQ-----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQ-- 225 (360)
T ss_dssp EECS-----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGC--
T ss_pred eecc-----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhh--
Confidence 9988 3444899999999999998877666554 899999999999989999999998887776543 11110
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCcCccc
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQRA 380 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~~~~~ 380 (458)
...+. ..++..++++...+.++..+++++.+. +++++.++.+++++++.+.|++++++ .+..++ ..++
T Consensus 226 ----~~~~~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~~~~ 295 (360)
T 1w23_A 226 ----YATHI--KSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEK----GSRS 295 (360)
T ss_dssp ----HHHHH--HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCG----GGBC
T ss_pred ----hhhhh--hccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCc----hhcc
Confidence 00000 023456789999999999999988775 58899999999999999999988654 543211 1124
Q ss_pred c-EEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 381 A-LCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 381 ~-~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ +++|.+++. +..++.+.|.++ ||.+.+|..+ ++++|++++.+++++|+++++++|++++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~----------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 296 LMNVTFNLRNEELNQQFLAKAKEQ-GFVGLNGHRS----------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCccHHHHHHHHHHC-CeeeecCCCC----------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 5 899998752 346788888877 9999877521 578999999989999999999999998764
No 34
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=5.9e-35 Score=281.78 Aligned_cols=321 Identities=17% Similarity=0.186 Sum_probs=256.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+... ++++.+.+++.+.+.....++ ....+++++.+++++|++++ +|++|+|+|++++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEE-ELIFTAGVDELIEL 99 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChh-hEEEeCCHHHHHHH
Confidence 578999998666 578888888877543221111 23456899999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||+|+++.++|++ +...++..|++++.++.++++.+|++++++.+++++++|++++++||||.+
T Consensus 100 ~~~~~----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~ 171 (363)
T 3ffh_A 100 LTRVL----LDTTTNTVMATPTFVQ----YRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNY 171 (363)
T ss_dssp HHHHH----CSTTCEEEEEESSCHH----HHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHH----ccCCCEEEEcCCChHH----HHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCC
Confidence 99988 6899999999999994 456667779999999999888999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhc--CcEEEEeccccCCcc-----cCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 225 LPIEEIVHWSHDV--GAKVLVDACQSVPHM-----VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 225 ~~l~~i~~l~~~~--~~~vivD~a~~~g~~-----~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
+|++++.++++.. |+++|+|++|+.... ... ....+.++++.|++|.+|++| +|++++++++++.+....
T Consensus 172 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~ 251 (363)
T 3ffh_A 172 IELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVR 251 (363)
T ss_dssp CCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhC
Confidence 9999999998877 999999999983221 111 122346788999999998777 599999888776654322
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ..+++.....++..+++.. ..+++.+++++++++++.+.|++++++++..+.
T Consensus 252 ~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-- 304 (363)
T 3ffh_A 252 P-----------------------PFNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPAN-- 304 (363)
T ss_dssp C-----------------------SCCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC--
T ss_pred C-----------------------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCCC--
Confidence 1 2356666677777777633 236788899999999999999986688876433
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++++++.++. +..++.+.|.++ ||.+++|..+ +.++++|++++ +++|+++++++|++++
T Consensus 305 -----~~~~~~~~~~-~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 305 -----GNFVLIDLGI-EAGTIFSYLEKN-GYITRSGAAL--------GFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp -----SSEEEEECSS-CHHHHHHHHHHT-TEECEETTTT--------TCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred -----CeEEEEECCC-CHHHHHHHHHHC-CeEEEeCccC--------CCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 6788999876 778999999988 9999988743 34689999988 8999999999998763
No 35
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8e-35 Score=283.97 Aligned_cols=335 Identities=18% Similarity=0.129 Sum_probs=261.9
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
.|+.++.. ++++.+.+++.+++.....++. ......+..+++++.+++++|++++ +|++|+|+|+|+..++.+
T Consensus 33 ~~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~-~i~~~~ggt~a~~~~~~~ 105 (397)
T 3f9t_A 33 NIFGSMCS-NVLPITRKIVDIFLETNLGDPG-----LFKGTKLLEEKAVALLGSLLNNKDA-YGHIVSGGTEANLMALRC 105 (397)
T ss_dssp CBCSCSCC-CCCTHHHHHHHHHTTCCTTSGG-----GBHHHHHHHHHHHHHHHHHTTCTTC-EEEEESCHHHHHHHHHHH
T ss_pred CeEEEecC-CCcHHHHHHHHHHHhhcCCCcc-----cChhHHHHHHHHHHHHHHHhCCCCC-CEEEecCcHHHHHHHHHH
Confidence 56776644 4556788888887654322221 1124567778899999999999876 899999999999999998
Q ss_pred cCCC---------CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEeccc
Q 012718 149 WGLS---------NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHIS 218 (458)
Q Consensus 149 l~~~---------~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~ 218 (458)
+... ...+||+|+++.++|++. ...++..|++++.++.++++.+|++++++.+++ ++++|++++++
T Consensus 106 ~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 181 (397)
T 3f9t_A 106 IKNIWREKRRKGLSKNEHPKIIVPITAHFSF----EKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGT 181 (397)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEETTCCTHH----HHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSC
T ss_pred HHHHHHhhhhhcccCCCCeEEEECCcchhHH----HHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCC
Confidence 7311 112499999999999964 555666799999999998899999999999998 89999999999
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcc--------------cCCCCCCCCcEEEecccCCC-CCCceeEEEEe
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--------------VVDVQGLDADFLVASSHKMC-GPTGIGFLFGK 283 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~--------------~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~ 283 (458)
||||.+.|+++|.++|+++|+++|+|++|+.+.. ++++.. +.|++++|+||++ ++.++|+++++
T Consensus 182 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~ 260 (397)
T 3f9t_A 182 TELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFK 260 (397)
T ss_dssp TTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEES
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEe
Confidence 9999999999999999999999999999985543 344444 7899999999966 56679999997
Q ss_pred ccc-cccCC---CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 284 SDL-LSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 284 ~~~-~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++. .+.+. ++..++. .....++.+.....++.++++.+...+++++.++.+++++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (397)
T 3f9t_A 261 DIGYKRYLDVDAPYLTETR----------------QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324 (397)
T ss_dssp SGGGGGGTCEECTTSSSSE----------------ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhccCCccccCCC----------------ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 754 34442 2222111 011235555556777778888877777889999999999999999
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
|+++ ++++..++ .+++++|.+++ ..++.+.|.++ ||.++++.. ++++|++++.+++++|
T Consensus 325 L~~~-g~~~~~~~------~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~~~~-----------~~~~Ri~~~~~~~~e~ 383 (397)
T 3f9t_A 325 LKEN-NFKPVIEP------ILNIVAIEDED--YKEVCKKLRDR-GIYVSVCNC-----------VKALRIVVMPHIKREH 383 (397)
T ss_dssp HHHT-TCCBSSCC------SSSEEEEECTT--HHHHHHHHHHT-TCBCEECSS-----------SSEEEEECCTTCCHHH
T ss_pred HHHC-CCEEEcCC------CccEEEEEeCC--HHHHHHHHHhC-CeEEeccCC-----------CCEEEEEEcCCCCHHH
Confidence 9988 77755543 26788888774 67899999988 999987652 5799999998899999
Q ss_pred HHHHHHHHHHHHH
Q 012718 440 VDEFIHALNETVS 452 (458)
Q Consensus 440 i~~l~~~l~~~~~ 452 (458)
+++++++|+++++
T Consensus 384 i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 384 IDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998875
No 36
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=7.7e-35 Score=281.40 Aligned_cols=323 Identities=15% Similarity=0.174 Sum_probs=257.2
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHh--ccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+++++|+.+... +.|+.+.+++.+.+... ..++. ...+++++++++++|++..++|++|+|+|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~ 98 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-----------PSSEALRAKLKEVMQVPAGMEVLLGNGSDEII 98 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-----------CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHH
Confidence 678999988765 57889999999988742 11111 12458999999999994334999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
++++.++ +++||+|+++.++|++... .++..|++++.++.++++.+|++++++.+++ ++++|++++++|||
T Consensus 99 ~~~~~~~----~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 170 (367)
T 3euc_A 99 SMLALAA----ARPGAKVMAPVPGFVMYAM----SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPT 170 (367)
T ss_dssp HHHHHHT----CCTTCEEEEEESCSCCSCH----HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTT
T ss_pred HHHHHHH----cCCCCEEEEcCCCHHHHHH----HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCC
Confidence 9999988 7899999999999997643 3556799999999998889999999999988 89999999999999
Q ss_pred ccccc---HHHHHHHHHhc--CcEEEEeccccCCcc---cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCC
Q 012718 222 ASILP---IEEIVHWSHDV--GAKVLVDACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP 291 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~--~~~vivD~a~~~g~~---~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~ 291 (458)
|.++| +++|+++|++| |+++|+|++|+.... ...+...+.++++.|+||. ++.| +|++++++++++.+.
T Consensus 171 G~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~ 249 (367)
T 3euc_A 171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLD 249 (367)
T ss_dssp CCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHG
T ss_pred CCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHH
Confidence 99987 67788889999 999999999983211 1123345577999999998 6665 899999888776654
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
.... ..+++.....++..+++. . ..+++..++++++++++.+.|+++|++++..+
T Consensus 250 ~~~~-----------------------~~~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~ 304 (367)
T 3euc_A 250 KVRP-----------------------PYNVNVLTEATALFALEH-V-AVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS 304 (367)
T ss_dssp GGCC-----------------------SSCCCHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC
T ss_pred HhCC-----------------------CCCCCHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC
Confidence 3221 234666677777777765 2 23678889999999999999999989886433
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. +.++++.++ +..++.+.|.++ ||.++++..|... .++++|++++ +++|+++++++|++++
T Consensus 305 ~-------~~~~~~~~~--~~~~l~~~l~~~-gi~v~~~~~~~~~------~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 305 A-------ANFLLARVP--DAAQTFDRLLAR-KVLIKNVSKMHPL------LANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp S-------SSEEEEECS--CHHHHHHHHHTT-TEECEECGGGCGG------GTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred C-------CeEEEEECC--CHHHHHHHHHHC-CeEEEECCccCCC------CCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 2 678888887 678899999888 9999988765422 2689999987 8999999999999886
Q ss_pred H
Q 012718 452 S 452 (458)
Q Consensus 452 ~ 452 (458)
+
T Consensus 366 ~ 366 (367)
T 3euc_A 366 Q 366 (367)
T ss_dssp C
T ss_pred c
Confidence 4
No 37
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=4.4e-35 Score=288.70 Aligned_cols=350 Identities=14% Similarity=0.148 Sum_probs=260.9
Q ss_pred hcCCCCcccccccCCCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC
Q 012718 51 TRPDFPILHQEVYGSKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125 (458)
Q Consensus 51 ~r~~f~~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g 125 (458)
+|..+..+.....+++++++|+.+... ++++.+.+++.+.+.....+.+ .......+++++++++++
T Consensus 39 i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y--------~~~~g~~~lr~~la~~~~ 110 (427)
T 3dyd_A 39 IRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGY--------APSIGFLSSREEIASYYH 110 (427)
T ss_dssp --------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSC--------CCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCC--------CCCCCcHHHHHHHHHHHh
Confidence 444444443333335778999988753 7889999999998875321111 112334589999999998
Q ss_pred -----CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCH
Q 012718 126 -----ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDL 198 (458)
Q Consensus 126 -----~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~ 198 (458)
++++ +|++|+|+|+|+.+++.++ .++||+|+++.|+|++ +...++..|++++.++.++ ++.+|+
T Consensus 111 ~~~~~~~~~-~v~~t~g~t~al~~~~~~l----~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~ 181 (427)
T 3dyd_A 111 CPEAPLEAK-DVILTSGCSQAIDLCLAVL----ANPGQNILVPRPGFSL----YKTLAESMGIEVKLYNLLPEKSWEIDL 181 (427)
T ss_dssp BTTBCCCGG-GEEEESSHHHHHHHHHHHH----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred hcCCCCChH-HEEEecCcHHHHHHHHHHh----cCCCCEEEEcCCCchh----HHHHHHHcCCEEEEEecccccCCCCCH
Confidence 5554 9999999999999999998 6799999999999984 4666777899999999864 467899
Q ss_pred HHHHHhhcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCCCC---CcEEEecc
Q 012718 199 DKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD---ADFLVASS 268 (458)
Q Consensus 199 ~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~---~d~~~~s~ 268 (458)
+.+++.++++++++++++++||||.++| +++|+++|+++|+++|+|++|+... ....+...+ ..++++|+
T Consensus 182 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~ 261 (427)
T 3dyd_A 182 KQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261 (427)
T ss_dssp HHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence 9999999989999999999999999999 9999999999999999999998522 212222222 23778899
Q ss_pred cCCCCCCc--eeEEEEecc-------ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 269 HKMCGPTG--IGFLFGKSD-------LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 269 ~K~~gp~g--~G~l~~~~~-------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
||.|+.+| +|+++++++ +++.+..... ...+++.....++..+++....
T Consensus 262 sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~----------------------~~~~~~~~~~~a~~~~L~~~~~ 319 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ----------------------RILGPCTIVQGALKSILCRTPG 319 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH----------------------HHCCSCHHHHHHHHHHHHHSCH
T ss_pred cccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHh----------------------ccCCCCHHHHHHHHHHHHhcCH
Confidence 99888777 899999863 2222221110 0235677677777777764323
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC------CCChHHHHHHHh-hhcCeEeccCCC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE------NIHPTDIATLLD-QQYGVATRSGHH 412 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~l~-~~~gi~~~~g~~ 412 (458)
..+++..++++++++++.+.|+++|++++..+.. +.++++.++ +.+..++++.|. ++ ||.+.+|..
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~------g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-gV~v~~g~~ 392 (427)
T 3dyd_A 320 EFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSG------AMYLMVGIEMEHFPEFENDVEFTERLVAEQ-SVHCLPATC 392 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSB------TTEEEEEECGGGCTTCSSHHHHHHHHHHHH-CEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe------eEEEEEecCHhhcCCCCCHHHHHHHHHHHC-CEEEECCcc
Confidence 3467888899999999999999998998776542 557787776 245678888886 56 999999874
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
| +.++++||+++ ++++++++++++|.+++++.++
T Consensus 393 ~--------~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~~ 426 (427)
T 3dyd_A 393 F--------EYPNFIRVVIT--VPEVMMLEACSRIQEFCEQHYH 426 (427)
T ss_dssp G--------TCTTEEEEESC--SCHHHHHHHHHHHHHHHHHHCC
T ss_pred c--------CCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 4 33689999987 7999999999999999987653
No 38
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=1.6e-34 Score=277.75 Aligned_cols=322 Identities=13% Similarity=0.134 Sum_probs=258.1
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++++|+.+... ++++.+.+++.+.+.....+ .....+++++.+++++|++++ +|++|+|+++|+.
T Consensus 15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y-----------~~~~~~~l~~~la~~~~~~~~-~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 15 TDNPIRINFNENPLGMSPKAQAAARDAVVKANRY-----------AKNEILMLGNKLAAHHQVEAP-SILLTAGSSEGIR 82 (354)
T ss_dssp SSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSC-----------CHHHHHHHHHHHHHHTTSCGG-GEEEESHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHhhCcCC-----------CCCchHHHHHHHHHHhCCChH-HEEEeCChHHHHH
Confidence 4788999988766 58889999988876532111 123567899999999998765 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc--CCceEEEEecccCcC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHHISNML 221 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~n~t 221 (458)
+++.++ .++||+|+++.++|++ +...++..|++++.++.++++.+|++++++.++ +++++|++++++|||
T Consensus 83 ~~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~npt 154 (354)
T 3ly1_A 83 AAIEAY----ASLEAQLVIPELTYGD----GEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPT 154 (354)
T ss_dssp HHHHHH----CCTTCEEEEESSSCTH----HHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTT
T ss_pred HHHHHH----hCCCCeEEECCCCchH----HHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCc
Confidence 999988 6899999999999995 455667789999999998888999999999998 789999999999999
Q ss_pred cccccHHHHHHHHHh--cCcEEEEeccccCCcccC---C----CCCC-CCcEEEecccCCCCCCc--eeEEEEecccccc
Q 012718 222 ASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV---D----VQGL-DADFLVASSHKMCGPTG--IGFLFGKSDLLSA 289 (458)
Q Consensus 222 G~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~---~----~~~~-~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~ 289 (458)
|.++|++++.++++. +|+++|+|++|+.....- . .... +.+++++|+||.+|++| +|++++++++++.
T Consensus 155 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 234 (354)
T 3ly1_A 155 GTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIAL 234 (354)
T ss_dssp CCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHH
Confidence 999998888888777 999999999998433211 1 1223 56799999999888666 8999998887766
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+..... .++++.....++..+++... .+++.+++++++++++.+.|+++ ++++.
T Consensus 235 ~~~~~~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 288 (354)
T 3ly1_A 235 MGRYVA-----------------------GEKINFSGVDAALASMNDSA--FITYSKKSNDVSRQILLKALEDL-KLPYL 288 (354)
T ss_dssp HGGGTT-----------------------CSCCCHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHHHHHH-TCCBC
T ss_pred HHHhcC-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC-CCeEC
Confidence 653322 13667767777777766442 36788899999999999999887 66654
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.+. +.++++.+++ +..++.+.|.++ ||.++ |.++ +.++++|++++ +++|++++++.|++
T Consensus 289 ~~~-------~~~~~~~~~~-~~~~~~~~l~~~-gi~v~-g~~~--------~~~~~iRis~~---~~~~i~~~~~~l~~ 347 (354)
T 3ly1_A 289 PSE-------GNFVFHQLVV-PLKDYQTHMADA-GVLIG-RAFP--------PADNWCRISLG---TPQEMQWVADTMRE 347 (354)
T ss_dssp CCC-------SSEEEEECSS-CHHHHHHHHHHT-TEECC-CCCT--------TCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCC-------ceEEEEECCC-CHHHHHHHHHHC-CEEEe-ecCC--------CCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 322 6788999876 678899999987 99998 7654 23789999987 78999999999999
Q ss_pred HHHh
Q 012718 450 TVSF 453 (458)
Q Consensus 450 ~~~~ 453 (458)
++++
T Consensus 348 ~l~~ 351 (354)
T 3ly1_A 348 FRKK 351 (354)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 39
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.2e-34 Score=279.92 Aligned_cols=319 Identities=16% Similarity=0.193 Sum_probs=255.2
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+... ++++.+.+++.+.+.....++... ..++|+.+++++|++++ +|++|+|++++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~v~~~~g~~~a~~~ 97 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS-----------MIELKSTLAQKYKVQNE-NIIIGAGSDQVIEF 97 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-----------CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-----------hHHHHHHHHHHhCCCcc-eEEECCCHHHHHHH
Confidence 567999988655 678999999998876433332211 13789999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
++.++ +++||+|+++.++|++ +...++..|++++.+++ ++++ +|++++++.+++++++|++++++||||.
T Consensus 98 ~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~ 168 (365)
T 3get_A 98 AIHSK----LNSKNAFLQAGVTFAM----YEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGE 168 (365)
T ss_dssp HHHHH----CCTTCEEEECSSCCTH----HHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCC
T ss_pred HHHHH----hCCCCEEEEeCCChHH----HHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCC
Confidence 99988 7899999999999994 45566677999999998 5667 9999999999999999999999999999
Q ss_pred cccHHHHHHHHH--hcCcEEEEecccc------CCcccCCC----CCCCCcEEEecccCCCCCCc--eeEEEEecccccc
Q 012718 224 ILPIEEIVHWSH--DVGAKVLVDACQS------VPHMVVDV----QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSA 289 (458)
Q Consensus 224 ~~~l~~i~~l~~--~~~~~vivD~a~~------~g~~~~~~----~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~ 289 (458)
++|++++.++++ ++|+++|+|++|+ .+..+.+. ...+.+++++|+||.+|++| +|++++++++++.
T Consensus 169 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 248 (365)
T 3get_A 169 CLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISA 248 (365)
T ss_dssp CCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHH
T ss_pred CcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHH
Confidence 999888888887 6799999999998 32222221 22357899999999888666 8999998887766
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+..... ..+++.....++..+++.. ..+++.+++++++++++.+.|+++ ++++.
T Consensus 249 ~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 302 (365)
T 3get_A 249 FYKLRA-----------------------PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKH-NIKII 302 (365)
T ss_dssp HHHHSC-----------------------TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHT-TCEEC
T ss_pred HHHhcC-----------------------CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhC-CCEEC
Confidence 543221 1246666677777777643 236788899999999999999988 88875
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.+. ++++++.+++.+..++.+.|.++ ||.+++|..| + ++++|++++ +++|++++++.|++
T Consensus 303 ~~~-------~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~--------~-~~~iRis~~---~~~~i~~l~~~l~~ 362 (365)
T 3get_A 303 DSY-------TNFITYFFDEKNSTDLSEKLLKK-GIIIRNLKSY--------G-LNAIRITIG---TSYENEKFFTEFDK 362 (365)
T ss_dssp CCS-------SSEEEEECSSSCHHHHHHHHHTT-TEECEECGGG--------T-CSEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCC-------CeEEEEECCCCCHHHHHHHHHHC-CEEEEECccC--------C-CCEEEEEcC---CHHHHHHHHHHHHH
Confidence 443 67889998765788999999988 9999998744 3 679999988 88999999999998
Q ss_pred HH
Q 012718 450 TV 451 (458)
Q Consensus 450 ~~ 451 (458)
++
T Consensus 363 ~l 364 (365)
T 3get_A 363 IL 364 (365)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 40
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=2.8e-34 Score=279.77 Aligned_cols=339 Identities=14% Similarity=0.128 Sum_probs=257.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a 141 (458)
+++++.|..+... +.++.+.+++.+.+.... +.++....+..+.+.+.+++.+| .+++ +|++|+|+++|
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~la~~l~~~~g~~~~~~-~i~~~~g~~~a 97 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAA-------FGYESVPAEYYKAVADWEEIEHRARPKED-WCVFASGVVPA 97 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHSCCCCGG-GEEEESCHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhcCc-------CCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEECCCHHHH
Confidence 4578888887655 678999999998875421 11111135666677788888887 4444 99999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-C--CCCCHHHHHHhhc-CCceEEEEecc
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-D--ESPDLDKLKEMLS-RKTKLVVIHHI 217 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~--~~~d~~~l~~~l~-~~~~~v~~~~~ 217 (458)
+.+++.++ +++||+|+++.++|++ +...++..|++++.++.+. + +.+|+++++++++ .++++|+++++
T Consensus 98 ~~~~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p 169 (391)
T 3dzz_A 98 ISAMVRQF----TSPGDQILVQEPVYNM----FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNP 169 (391)
T ss_dssp HHHHHHHH----SCTTCEEEECSSCCHH----HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESS
T ss_pred HHHHHHHh----CCCCCeEEECCCCcHH----HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECC
Confidence 99999998 6899999999999995 4555677899999999852 2 3479999999998 68999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCCCC---Cc--EEEecccCCCCCCc--eeEEEEe
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD---AD--FLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~---~d--~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
+||||.++| +++|.++|+++|+++|+|++|+... .+.++.... +| +++.|+||.+|++| +|+++++
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~ 249 (391)
T 3dzz_A 170 HNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIP 249 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECC
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEEC
Confidence 999999965 8889999999999999999998432 222332222 45 99999999877555 9999997
Q ss_pred -ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 284 -SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 284 -~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
+++++.+...... ....+++.....++..+++.... .++++.++++++++++.+.|++
T Consensus 250 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 250 NPDLRARAEESFFL--------------------AGIGEPNLLAIPAAIAAYEEGHD-WLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp SHHHHHHHHHHHHH--------------------HTCSSCCTTHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--------------------hccCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655432210 11234555566666666665322 2678889999999999999998
Q ss_pred -CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 363 -IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 363 -~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
++++++..+.. +.++++.++ +.+..++.+.|. ++ ||.+++|..|.... ++++|++++ ++++
T Consensus 309 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~~~~~~------~~~iRis~~--~~~~ 373 (391)
T 3dzz_A 309 EVPEVKVLDSNA------SYLAWVDISALGMNAEDFCKYLREKT-GLIISAGNGYRGNG------HEFVRINLA--CPKE 373 (391)
T ss_dssp HCTTSEECCCCB------SSEEEEECGGGCSCHHHHHHHHHHHH-CEECEESGGGCTTG------GGEEEEECC--SCHH
T ss_pred hCCCcEEeccCc------eEEEEEehhhcCCCHHHHHHHHHHhC-CEEEeCchhhCCCC------CCEEEEEec--CCHH
Confidence 78998875541 446678876 457889999996 66 99999988654321 579999999 6999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012718 439 DVDEFIHALNETVSFFN 455 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~ 455 (458)
++++++++|.+++++++
T Consensus 374 ~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 374 LVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 41
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3.2e-34 Score=279.38 Aligned_cols=334 Identities=11% Similarity=0.144 Sum_probs=258.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a~ 142 (458)
++++.|..+..+ ++|+.+.+++.+.+.... +.++....+..+++++.+++++| ++++ +|++|+|+|+|+
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~~g~~~a~ 103 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKSE-WLIYSPGVIPAI 103 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcHH-HeEEcCChHHHH
Confidence 677899888766 678999999998875411 11111236677788899999998 5454 999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CC--CCCCHHHHHHhhcCCceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DD--ESPDLDKLKEMLSRKTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~--~~~d~~~l~~~l~~~~~~v~~~~~~ 218 (458)
+.++.++ +++||+|+++.++|++. ...++..|++++.++.+ .+ +.+|++++++.+++ +++|++++++
T Consensus 104 ~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~ 174 (391)
T 4dq6_A 104 SLLINEL----TKANDKIMIQEPVYSPF----NSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPH 174 (391)
T ss_dssp HHHHHHH----SCTTCEEEECSSCCTHH----HHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSB
T ss_pred HHHHHHh----CCCCCEEEEcCCCCHHH----HHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCC
Confidence 9999988 68999999999999954 55566789999999987 33 34799999999988 9999999999
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCCCC-----CcEEEecccCCCCCCc--eeEEEEec
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD-----ADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~-----~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
||||.++| +++|+++|+++|+++|+|++|+... .+..+.... .++++.|+||.+|++| +|++++++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 254 (391)
T 4dq6_A 175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPD 254 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCS
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCC
Confidence 99999976 7789999999999999999998632 222333332 3488999999887666 89999887
Q ss_pred -cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-
Q 012718 285 -DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS- 362 (458)
Q Consensus 285 -~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~- 362 (458)
++++.+...... +..++++...+.++.++++...+. ++++.++++++++++.+.|++
T Consensus 255 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~ 313 (391)
T 4dq6_A 255 EKDYKLLDDAFTR--------------------IDIKRNNCFSLVATEASYNNGESW-LESFLEYLESNIDFAIKYINEN 313 (391)
T ss_dssp HHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------------------hcCCCCCHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 666555433211 123467777777777777653332 678889999999999999987
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++++..+.. +.++++.++ +.+..++.+.|.+++||.+++|..|... .++++|++++ ++++++
T Consensus 314 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~------~~~~iRis~~--~~~~~i 379 (391)
T 4dq6_A 314 MPKLKVRKPEG------TYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIG------GSGYQRINLA--CPRSML 379 (391)
T ss_dssp CTTSEECCCSB------SSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTT------CTTEEEEECC--SCHHHH
T ss_pred CCCCEecCCCc------cEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCC------CCCeEEEEEc--CCHHHH
Confidence 68888876541 346668887 4678899999988779999998755432 2589999999 689999
Q ss_pred HHHHHHHHHHH
Q 012718 441 DEFIHALNETV 451 (458)
Q Consensus 441 ~~l~~~l~~~~ 451 (458)
++++++|.+++
T Consensus 380 ~~~l~~l~~~l 390 (391)
T 4dq6_A 380 EEALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 42
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=6.9e-34 Score=276.93 Aligned_cols=335 Identities=16% Similarity=0.168 Sum_probs=254.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCc-EEEeCC
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGE-IVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~-v~~t~g 137 (458)
+++++|+.+... +.++.+.+++.+.+..... + +. ......++++.+++++ |. +++ + |++|+|
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~----~-y~----~~~g~~~l~~~la~~~~~~~g~~~~~~-~~v~~~~g 95 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLT----H-YG----PNIGLLELREAIAEKLKKQNGIEADPK-TEIMVLLG 95 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTTCC----S-CC----CTTCCHHHHHHHHHHHHHHHCCCCCTT-TSEEEESS
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCCCC----C-CC----CCCCcHHHHHHHHHHHHHHhCCCCCCC-CeEEEcCC
Confidence 356899888766 4688899999888764210 0 10 0112346667777776 84 443 7 999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|+++
T Consensus 96 ~~~a~~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 167 (389)
T 1gd9_A 96 ANQAFLMGLSAF----LKDGEEVLIPTPAFVSY----APAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIIN 167 (389)
T ss_dssp TTHHHHHHHTTT----CCTTCEEEEEESCCTTH----HHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEE
T ss_pred hHHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEE
Confidence 999999999887 67899999999999965 444566799999999875 35689999999998889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCC----CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQG----LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.+.. +.++.. .+.|++++|+||.+|++| +|++++
T Consensus 168 ~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 247 (389)
T 1gd9_A 168 SPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA 247 (389)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEE
Confidence 99999999996 88999999999999999999996543 122222 357899999999998777 799999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHh
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
++++++.+.....++ ..+.+.....++..+++.... ..++++.++++++++++.+.|+
T Consensus 248 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 306 (389)
T 1gd9_A 248 PSWIIERMVKFQMYN---------------------ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLN 306 (389)
T ss_dssp CHHHHHHHHHHHTTT---------------------TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhh---------------------ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 988776665332211 134555566666666664322 1367888999999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
++ ++++..+. .+.++++.++ +.+..++.+.|. ++ ||.+.+|..|... .++++|++++ .+++
T Consensus 307 ~~-g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~~~~~------~~~~iRi~~~--~~~~ 370 (389)
T 1gd9_A 307 EM-GLPTVKPK------GAFYIFPRIRDTGLTSKKFSELMLKEA-RVAVVPGSAFGKA------GEGYVRISYA--TAYE 370 (389)
T ss_dssp HT-TCCCCCCC------BTTEECCBCGGGTCCHHHHHHHHHHHT-CEECEEGGGGCGG------GTTBEEEECC--SCHH
T ss_pred Hc-CCeecCCC------eeeEEEEeccCCCCCHHHHHHHHHHhC-CEEEeCchhhCCC------CCCeEEEEec--CCHH
Confidence 87 77665432 1446777876 467788999997 66 9999998755321 2679999998 4899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012718 439 DVDEFIHALNETVSFFN 455 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~ 455 (458)
++++++++|.+++++.+
T Consensus 371 ~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 371 KLEEAMDRMERVLKERK 387 (389)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998754
No 43
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=3.6e-34 Score=279.80 Aligned_cols=336 Identities=16% Similarity=0.189 Sum_probs=259.2
Q ss_pred CCeEEecCCCC-CC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-SQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++.|+.+.. +. +++.+.+++.+.+...... ...+....+..+..+++++.+++++|.+ ++++|+|+++|+.
T Consensus 43 ~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~~ggt~a~~ 117 (398)
T 3a2b_A 43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTG--CAGSRFLNGTLDIHVELEEKLSAYVGKE---AAILFSTGFQSNL 117 (398)
T ss_dssp EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSC--CCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHH
T ss_pred ceEEEeecccccCCCCCHHHHHHHHHHHHHcCCC--CCCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECCHHHHHH
Confidence 55677877765 53 7889999999988664211 1111111223466778999999999974 8999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC----CceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n 219 (458)
.++.++ +++||.|+++.++|.+. ...++..|++++.++. +|++++++.+++ ++++|++++++|
T Consensus 118 ~~~~~~----~~~gd~V~~~~p~~~~~----~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~n 184 (398)
T 3a2b_A 118 GPLSCL----MGRNDYILLDERDHASI----IDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFS 184 (398)
T ss_dssp HHHHHS----SCTTCEEEEETTCCHHH----HHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCT
T ss_pred HHHHHH----hCCCCEEEECCccCHHH----HHHHHHcCCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCC
Confidence 999988 68999999999999955 4455667999999986 389999999876 789999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcc---cCCC-C--CC--CCcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDV-Q--GL--DADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~-~--~~--~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
|||.+.|+++|.++|+++|+++|+|++|+.+.. ...+ . .. ++|++++|+||++||.| |++++++++++.+.
T Consensus 185 ptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~ 263 (398)
T 3a2b_A 185 MEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLK 263 (398)
T ss_dssp TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHH
Confidence 999999999999999999999999999986643 1121 1 11 26999999999999888 99999988776654
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
.....+ ...++++..+.+++..+++.+.. ++++.++++++++++.+.|+++ ++++..+
T Consensus 264 ~~~~~~-------------------~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 321 (398)
T 3a2b_A 264 HNARSV-------------------MFSASMTPASVASTLKALEIIQN--EPEHIEKLWKNTDYAKAQLLDH-GFDLGAT 321 (398)
T ss_dssp HHCHHH-------------------HSSBCCCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred Hhcccc-------------------eecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHhc-CCCcCCC
Confidence 321100 11345666666666677776543 4678889999999999999887 7766433
Q ss_pred CCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
. ++++++.++. .+..++.+.|.++ ||.++++..|..+. ..+++|++++.+++++|+++++++|+++
T Consensus 322 ~-------g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~-----~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 322 E-------SPILPIFIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPA-----EESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp C-------SSEEEEECCCHHHHHHHHHHHHHT-TEECEEECTTTSCG-----GGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred C-------CCEEEEEcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCC-----CCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 6788998863 3467899999988 99999987653221 1578999999888999999999999999
Q ss_pred HHhhh
Q 012718 451 VSFFN 455 (458)
Q Consensus 451 ~~~~~ 455 (458)
++++.
T Consensus 389 l~~~~ 393 (398)
T 3a2b_A 389 FKQAE 393 (398)
T ss_dssp HHHCC
T ss_pred HHHhC
Confidence 88653
No 44
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.2e-33 Score=279.53 Aligned_cols=352 Identities=11% Similarity=0.055 Sum_probs=260.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEe
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFT 135 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t 135 (458)
++++++|+.+... ++++.+.+++.+.+.... .++ .....+++|+.++++++ ++++ +|++|
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~----------~~~g~~~lr~~la~~~~~~~g~~~~~~-~i~~t 111 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYP----------NLDGLPELKQEASRFAKLFVNIDIPAR-ACVPT 111 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCC----------CTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCC----------CCCChHHHHHHHHHHHHHhhCCCCCcc-cEEEe
Confidence 4678999988766 568899999998887411 111 11123467777777776 3444 99999
Q ss_pred CChhHHHHHHHHHcCCCCC--CCCC--EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhh-cCCc
Q 012718 136 KNATEAINLVAYSWGLSNL--KSGD--EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEML-SRKT 209 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~--~~g~--~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l-~~~~ 209 (458)
+|+|+++.+++.++ . ++|| +|+++.++|++ +...++..|++++.++++++ +.+|++++++++ +.++
T Consensus 112 ~g~t~al~~~~~~l----~~~~~gd~~~Vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (437)
T 3g0t_A 112 VGSMQGCFVSFLVA----NRTHKNREYGTLFIDPGFNL----NKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQF 183 (437)
T ss_dssp SHHHHHHHHHHHHH----TTSCTTCSCCEEEEESCCHH----HHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH----hcCCCCCccEEEEeCCCcHh----HHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCc
Confidence 99999999999988 5 8999 99999999995 45556677999999998744 468999999999 6789
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cC--------CCCC-CCCcEEEecccCCCC
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV--------DVQG-LDADFLVASSHKMCG 273 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~--------~~~~-~~~d~~~~s~~K~~g 273 (458)
++|++++++||||.++| +++|+++|+++|+++|+|++|+.... ++ .+.. .+.+++++|+||.+|
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 263 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFS 263 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTS
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCC
Confidence 99999999999999998 67789999999999999999985322 21 2222 567799999999988
Q ss_pred CCc--eeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHH
Q 012718 274 PTG--IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAY 348 (458)
Q Consensus 274 p~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~~~~~ 348 (458)
++| +|++++++++++ .+..+..+++..... ..+..........+++.....++..+++....+ .+++++++
T Consensus 264 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (437)
T 3g0t_A 264 YAGQRIGVLMISGKLYEREYPDLEESFGRLRFG----EALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIE 339 (437)
T ss_dssp CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHH----HHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred CccceeEEEEECHHHhhhhhhcccccccccchh----HHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 767 999999988776 521111000000000 000000001113466776777777777665432 17889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEe------CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcC
Q 012718 349 EMELAKYLYENLLSIPNIRIY------GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG 422 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g 422 (458)
++++++++.+.|+++ ++++. .+.. .+.++++.+++.+..++.+.|.++ ||.+.++..|...
T Consensus 340 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~~~~~~~~------ 406 (437)
T 3g0t_A 340 YGRKARIMKKMFLDN-GFNIVYDKDGNEPLA-----DGFYFTVGYKGMDSSKLIEKFVRY-GMCAITLKTTGSK------ 406 (437)
T ss_dssp HHHHHHHHHHHHHTT-TEEESSCEETTEECC-----SSSEEEEEETTCCHHHHHHHHHHT-TEECEESTTTTCC------
T ss_pred HHHHHHHHHHHHHHc-CCEEeccccCCCCCc-----eeEEEEEecCCCCHHHHHHHHHHc-CeEEeeccccCCC------
Confidence 999999999999998 88887 2311 266889999877889999999988 9999998765321
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 423 VNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 423 ~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.++++|+|++. .+.+|+++++++|.+++++
T Consensus 407 ~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 407 RNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 13789999994 5999999999999998764
No 45
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=3.7e-34 Score=278.20 Aligned_cols=334 Identities=14% Similarity=0.143 Sum_probs=253.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHh-ccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a 141 (458)
++++.|..+... ++++.+.+++.+.+... ..+. ....+..+++.+.+++.+| ++++ +|++|+|+|+|
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~--------~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~~g~~~a 94 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYT--------LPPENIGDIICNWTKKQYNWDIQKE-WIVFSAGIVPA 94 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCC--------CCCTTHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHH
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCC--------CCCHHHHHHHHHHHHHHhCCCCChh-hEEEcCCHHHH
Confidence 678889887655 57899999999887641 1111 1134566678888888888 4444 99999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC---CCCHHHHHHhhcCCceEEEEeccc
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE---SPDLDKLKEMLSRKTKLVVIHHIS 218 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~---~~d~~~l~~~l~~~~~~v~~~~~~ 218 (458)
+++++.++ +++||+|+++.++|++. ...++..|++++.++.++++ .+|++++++.+++++++|++++++
T Consensus 95 ~~~~~~~l----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~ 166 (383)
T 3kax_A 95 LSTSIQAF----TKENESVLVQPPIYPPF----FEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPH 166 (383)
T ss_dssp HHHHHHHH----CCTTCEEEECSSCCHHH----HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSB
T ss_pred HHHHHHHh----CCCCCEEEEcCCCcHHH----HHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCC
Confidence 99999988 78999999999999954 55567789999999987433 489999999998899999999999
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCCC-----CCcEEEecccCCCCCCc--eeEEEE-e
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGL-----DADFLVASSHKMCGPTG--IGFLFG-K 283 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~-----~~d~~~~s~~K~~gp~g--~G~l~~-~ 283 (458)
||||.++| +++|+++|+++|+++|+|++|+.... +.++... +.++++.|+||.+|++| +|++++ +
T Consensus 167 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 246 (383)
T 3kax_A 167 NPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPN 246 (383)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCC
Confidence 99999998 55667779999999999999985322 1222222 45689999999888666 899988 4
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS- 362 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~- 362 (458)
+++++.+...... +..++++...+.++..+++...+ .++++.++++++++++.+.|++
T Consensus 247 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~ 305 (383)
T 3kax_A 247 EKLRQAFTSIQYR--------------------QGFHGLNIFAYTAMQSAYTECND-WLNEIRFYIEDNAKFACEYIKDH 305 (383)
T ss_dssp HHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHTTTCHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--------------------cccCCCCHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666555433221 11246777777777666654322 2678889999999999999987
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++++..+.. +.++++.++ +.+..++.+.|.+++||.+++|..|... .++++|++++ ++++++
T Consensus 306 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~------~~~~iRi~~~--~~~~~i 371 (383)
T 3kax_A 306 IPTLSVMKPEG------SFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLG------GEEHIGINIG--CPRSVL 371 (383)
T ss_dssp CTTCEECCCSB------SSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTT------CTTEEEEECS--SCHHHH
T ss_pred CCCceEecCCc------eEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCC------CCCeEEEEEc--CCHHHH
Confidence 78888875541 346668776 3578899999974349999998866432 2689999999 689999
Q ss_pred HHHHHHHHHHH
Q 012718 441 DEFIHALNETV 451 (458)
Q Consensus 441 ~~l~~~l~~~~ 451 (458)
++++++|.+++
T Consensus 372 ~~~l~~l~~~l 382 (383)
T 3kax_A 372 EEILNRLRHTF 382 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 46
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=4.2e-33 Score=274.58 Aligned_cols=338 Identities=18% Similarity=0.170 Sum_probs=261.8
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
..++.|..+.. + ..++.+.+++.+.+..+... .+.+....+..+..+++++.+++++|.+ +++++++|++|+.
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~G~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~ 138 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSG--TCGSRMLNGTFHDHMEVEQALRDFYGTT---GAIVFSTGYMANL 138 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSC--CCSCTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCC--CcccccccCCcHHHHHHHHHHHHHhCCC---ceEEecCcHHHHH
Confidence 45667766653 4 47788999999988764321 1111112223466778999999999975 6677788888999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC----CceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n 219 (458)
.++.++ +++||.|+++.+.|.+.. ..++..|++++.++. .|+++|++.+++ ++++|++++++|
T Consensus 139 ~al~~l----~~~gd~vl~~~~~h~~~~----~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n 205 (427)
T 2w8t_A 139 GIISTL----AGKGEYVILDADSHASIY----DGCQQGNAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYS 205 (427)
T ss_dssp HHHHHH----SCTTCEEEEETTCCHHHH----HHHHHSCSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEET
T ss_pred HHHHHh----cCCCCEEEECCcccHHHH----HHHHHcCCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCC
Confidence 998887 689999999999999654 334566999998874 489999999876 789999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l 290 (458)
|+|.+.|+++|.++|+++|+++|+|++|+.+... +++. .++|++++|+||++|+.| |++++++++++.+
T Consensus 206 ~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l 283 (427)
T 2w8t_A 206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAV 283 (427)
T ss_dssp TTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGG
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHH
Confidence 9999999999999999999999999999977653 3332 357999999999889877 9999999887776
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
......+ ...++.+..+++++.++++.+.. ++++.++++++++++.+.|+++ ++++..
T Consensus 284 ~~~~~~~-------------------~~~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 341 (427)
T 2w8t_A 284 RLACRPY-------------------IFTASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAM-GFRLGT 341 (427)
T ss_dssp GGTCHHH-------------------HSSCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHH-TCEESC
T ss_pred HHhcccc-------------------cccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCcccC
Confidence 5431100 01346777777777788887653 5788899999999999999887 888763
Q ss_pred CCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+.. .++++++.+++ .+..++.+.|.++ ||.+.++..+..+ ...+++|++++.+++++|+++++++|++
T Consensus 342 ~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~-----~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 342 ETC-----DSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATP-----AGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp SSC-----CSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSC-----TTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCC-----CCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCC-----CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 321 26788998874 3466889999988 9999987654322 1146899999998999999999999999
Q ss_pred HHHhhhc
Q 012718 450 TVSFFNV 456 (458)
Q Consensus 450 ~~~~~~~ 456 (458)
+++++.+
T Consensus 411 ~l~~~~~ 417 (427)
T 2w8t_A 411 AGRAVGV 417 (427)
T ss_dssp HHHHHTC
T ss_pred HHHHhCc
Confidence 9987654
No 47
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=9.7e-34 Score=275.43 Aligned_cols=330 Identities=16% Similarity=0.181 Sum_probs=247.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCChh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~t 139 (458)
++.+.|+.+... +.|+.+.+++.+.+.... . .+. ......++|+++++++ |.+ ..++|++|+|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~ 101 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-T----KYA----PPAGIPELREALAEKFRRENGLSVTPEETIVTVGGS 101 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-C----SCC----CTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-C----CCC----CCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChH
Confidence 567899888765 567888888888775411 1 010 0112345667777666 432 124899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEecc
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+|+.+++.++ +++||+|+++.|+|+ .+...++..|++++.+++++ ++.+|++++++++++++++|+++++
T Consensus 102 ~al~~~~~~l----~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 173 (385)
T 1b5p_A 102 QALFNLFQAI----LDPGDEVIVLSPYWV----SYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSP 173 (385)
T ss_dssp HHHHHHHHHH----CCTTCEEEEEESCCT----HHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESS
T ss_pred HHHHHHHHHh----cCCCCEEEEcCCCch----hHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCC
Confidence 9999999998 689999999999998 45666778899999999975 4578999999999888999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCCC--CCcEEEecccCCCCCCc--eeEEEEecccc
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGL--DADFLVASSHKMCGPTG--IGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~~--~~d~~~~s~~K~~gp~g--~G~l~~~~~~~ 287 (458)
+||||.++| +++|+++|+++|++||+|++|+.... ..++..+ +.++++.|+||.+|++| +|+++++++++
T Consensus 174 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~ 253 (385)
T 1b5p_A 174 NNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVI 253 (385)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHH
Confidence 999999998 88999999999999999999985332 1122222 67899999999999878 99999988776
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY---LSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
+.+......+ ..+++.....++..+++. ... .+++.+++++++++++.+.|+++
T Consensus 254 ~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~- 310 (385)
T 1b5p_A 254 KAMASVSRQS---------------------TTSPDTIAQWATLEALTNQEASRA-FVEMAREAYRRRRDLLLEGLTAL- 310 (385)
T ss_dssp HHHHHHHHTT---------------------TCSCCHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhc---------------------cCCCCHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHHHHHHHHHHHHC-
Confidence 6654332111 123444455555556643 222 26778889999999999999887
Q ss_pred CEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+. .+.++++.++ +.+..++.+.|.++ ||.+++|..| +.++++|||++ ++++++++
T Consensus 311 g~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~-gv~v~~g~~f--------~~~~~iRis~~--~~~~~i~~ 373 (385)
T 1b5p_A 311 GLKAVRPS------GAFYVLMDTSPIAPDEVRAAERLLEA-GVAVVPGTDF--------AAFGHVRLSYA--TSEENLRK 373 (385)
T ss_dssp TCCBCCCS------BTTEEEEECTTTCSSHHHHHHHHHHT-TEECEESGGG--------TCTTEEEEECC--SCHHHHHH
T ss_pred CCeecCCC------eeEEEEEecCCCCCCHHHHHHHHHHC-CeEEeccccc--------CCCCeEEEEec--CCHHHHHH
Confidence 77765443 1447777775 45778899999877 9999998754 22679999998 79999999
Q ss_pred HHHHHHHHHH
Q 012718 443 FIHALNETVS 452 (458)
Q Consensus 443 l~~~l~~~~~ 452 (458)
++++|.++++
T Consensus 374 ~l~~l~~~l~ 383 (385)
T 1b5p_A 374 ALERFARVLG 383 (385)
T ss_dssp HHHHGGGGC-
T ss_pred HHHHHHHHHh
Confidence 9999887764
No 48
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=6e-34 Score=275.43 Aligned_cols=325 Identities=16% Similarity=0.168 Sum_probs=249.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
++++++|+.+..+ ..++.+.+++.+.+.... . . +. ......++++.++++++ .++ ++|++|+|
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~--~--y~----~~~~~~~l~~~la~~~~~~~g~~~~~-~~v~~~~g 97 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-T--H--YT----DSRGILELREKISELYKDKYKADIIP-DNIIITGG 97 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-C--S--CC----CTTCCHHHHHHHHHHHHHHSSCCCCG-GGEEEESS
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-c--C--CC----CCCCCHHHHHHHHHHHHHHhCCCCCh-hhEEECCC
Confidence 3678999988776 358889999988876421 0 0 00 01123467777777764 344 48999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++|+..++.++ +++||+|++++++|++. ...++..|++++.++ +|++++++.+++++++|+++++
T Consensus 98 ~~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p 163 (370)
T 2z61_A 98 SSLGLFFALSSI----IDDGDEVLIQNPCYPCY----KNFIRFLGAKPVFCD------FTVESLEEALSDKTKAIIINSP 163 (370)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEESSCCTHH----HHHHHHTTCEEEEEC------SSHHHHHHHCCSSEEEEEEESS
T ss_pred hHHHHHHHHHHh----cCCCCEEEEeCCCchhH----HHHHHHcCCEEEEeC------CCHHHHHHhcccCceEEEEcCC
Confidence 999999999988 68999999999999954 445667799999988 5899999999888999999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc---cCCCC----CCCCcEEEecccCCCCCCc--eeEEEEeccccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ----GLDADFLVASSHKMCGPTG--IGFLFGKSDLLS 288 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~----~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~ 288 (458)
+||||.++|++ |.++|+++|+++|+|++|+.+.. +.++. ..+.|++++|+||.+|++| +|++++++++++
T Consensus 164 ~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 242 (370)
T 2z61_A 164 SNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIE 242 (370)
T ss_dssp CTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred CCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHH
Confidence 99999999999 99999999999999999996543 22222 2367999999999998777 999999998776
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.....++ .++++.....++..+++.+....++++.++++++++++.+.|+++ ++++
T Consensus 243 ~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 300 (370)
T 2z61_A 243 AILKLQQNL---------------------FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEV 300 (370)
T ss_dssp HHHHHHHHH---------------------TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC
T ss_pred HHHHHHhhc---------------------ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 665432211 235666666666666654223346788899999999999999887 7766
Q ss_pred eCCCCCCcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+. .+.++++.+++ +..++.+.|. ++ ||.+++|..|... .++++|++++ ++++++++++++|
T Consensus 301 ~~~~------~~~~~~~~~~~-~~~~~~~~l~~~~-gi~v~~g~~f~~~------~~~~~Ri~~~--~~~~~i~~~~~~l 364 (370)
T 2z61_A 301 NNPI------GAYYVFPNIGE-DGREFAYKLLKEK-FVALTPGIGFGSK------GKNYIRISYA--NSYENIKEGLERI 364 (370)
T ss_dssp CCCC------BTTEECCBCSS-CHHHHHHHHHHHH-CEECEEGGGGCGG------GSSBEEEECC--SCHHHHHHHHHHH
T ss_pred cCCC------cceEEEEecCC-CHHHHHHHHHHhC-CEEEeCchhhCCC------CCCEEEEEEe--CCHHHHHHHHHHH
Confidence 5432 14567778876 6788999987 56 9999998755321 2679999999 6999999999999
Q ss_pred HHHHH
Q 012718 448 NETVS 452 (458)
Q Consensus 448 ~~~~~ 452 (458)
.++++
T Consensus 365 ~~~l~ 369 (370)
T 2z61_A 365 KEFLN 369 (370)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98875
No 49
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.2e-34 Score=282.13 Aligned_cols=341 Identities=14% Similarity=0.143 Sum_probs=257.7
Q ss_pred CeEEecCCCCC--CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCChhHHH
Q 012718 67 KLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI 142 (458)
Q Consensus 67 ~~i~l~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~a~ 142 (458)
.+++|..+... ++++.+.+++.+.+....... +.......+..+.+.+.+++++|.+ +.++|++|+|+++|+
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~----y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~ 115 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA----YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 115 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH----SCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC----cCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 57889876554 678889999999887532110 0011123566777888888988875 224899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC------CCCCCCCHHHHHHhhcCCceEEEEec
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL------NDDESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~------~~~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
..++.++ +++||+|+++.++|++ +...++..|++++.++. +.++.+|++++++.+++++++|++++
T Consensus 116 ~~~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 187 (407)
T 3nra_A 116 FLAVAAT----VARGDKVAIVQPDYFA----NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN 187 (407)
T ss_dssp HHHHHTT----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHh----CCCCCEEEEcCCcccc----hHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcC
Confidence 9999987 7899999999999995 45666778999999998 35678899999999998999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCC-----CCCCCcEEEecccCCCCCCc--eeEEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV-----QGLDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~-----~~~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++||||.++| +++|+++|++||+++|+|++|+.+.. ...+ ...+.++++.|+||.+|+.| +|+++.
T Consensus 188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (407)
T 3nra_A 188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 267 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc
Confidence 9999999999 89999999999999999999985322 1111 22446799999999988666 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+......+ ..+++.....++..+++.. ...+++..++.+++++++.+.|++
T Consensus 268 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 325 (407)
T 3nra_A 268 SRAIIARMEKLQAIV---------------------SLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRG 325 (407)
T ss_dssp CHHHHHHHHHHHHHH---------------------TSSSCHHHHGGGGGTTCCC-TTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhh---------------------ccCCChHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhc
Confidence 888776665332211 1233444444443333311 112567788889999999999999
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++++..+. .+.++++.++. .+..++.+.|.+++||.+++|..|.+. ..+++|++++ .+.+||
T Consensus 326 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~------~~~~iRis~~--~~~~~i 391 (407)
T 3nra_A 326 CEGVFARTPQ------AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH------TADSVRLNFS--QDHEAA 391 (407)
T ss_dssp STTCBCCCCS------BSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTT------CTTBEEEECC--SCHHHH
T ss_pred CCCceeccCC------eeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC------CCCEEEEEeC--CCHHHH
Confidence 8888775543 14577777763 567889999875449999998866432 2689999998 499999
Q ss_pred HHHHHHHHHHHHhhh
Q 012718 441 DEFIHALNETVSFFN 455 (458)
Q Consensus 441 ~~l~~~l~~~~~~~~ 455 (458)
++++++|.+++++++
T Consensus 392 ~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 392 VAAARRIVTLVERYR 406 (407)
T ss_dssp HHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
No 50
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=7.9e-34 Score=275.72 Aligned_cols=333 Identities=17% Similarity=0.174 Sum_probs=254.6
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++++|+.+... +.++.+.+++.+.+... +.+ + ......++++.++++++++++ +|++|+|+++|+.++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y-~-------~~~~~~~l~~~la~~~~~~~~-~v~~~~g~~~a~~~~ 94 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQY-A-------PPAGLPALREALAEEFAVEPE-SVVVTSGATEALYVL 94 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTTS--CSC-C-------CTTCCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHh--cCC-C-------CCCCCHHHHHHHHHhcCCChh-hEEEcCChHHHHHHH
Confidence 46788877655 56788999998876541 110 1 112345899999999999865 899999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC---CCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~---~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
+.++ +++||+|++++++|++. ...++..|++++.++.+ +++.+|++++++.+++++++|++++++||||
T Consensus 95 ~~~~----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG 166 (381)
T 1v2d_A 95 LQSL----VGPGDEVVVLEPFFDVY----LPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTG 166 (381)
T ss_dssp HHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTC
T ss_pred HHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCC
Confidence 9988 68999999999999964 44567789999999986 4577899999999988999999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCc---ccCCCC--CCCCcEEEecccCCCCCCc--eeEEEEeccccccCCC
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP 292 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~ 292 (458)
.++| +++|.++|+++|+++|+|++|+... .+.++. ..+.|++++|+||.+|++| +|++++++++++.+..
T Consensus 167 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 246 (381)
T 1v2d_A 167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG 246 (381)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHH
Confidence 9998 7899999999999999999998542 222222 3468999999999888777 9999999887766543
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
... +...+.+.....++..+++... ...++++.++++++++++.+.|++. ++++..+
T Consensus 247 ~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 304 (381)
T 1v2d_A 247 MRQ---------------------WTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVP 304 (381)
T ss_dssp HHH---------------------HHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECC
T ss_pred HHh---------------------hcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCC
Confidence 211 1123556666677777777542 3347888999999999999999886 8877654
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. .+.++++.+++.+ +.+.+.++ ||.+++|..|.... ..++++||+++. +.+|+++++++|.+++
T Consensus 305 ~------~~~~~~~~~~~~~---~~~~l~~~-gi~v~~g~~~~~~~----~~~~~iRi~~~~--~~~~i~~~~~~l~~~l 368 (381)
T 1v2d_A 305 E------GTYFLMAELPGWD---AFRLVEEA-RVALIPASAFYLED----PPKDLFRFAFCK--TEEELHLALERLGRVV 368 (381)
T ss_dssp S------BSSEEEEECTTCC---HHHHHHHT-CEECEEGGGGCSSS----CCTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred C------cceEEEEecChHh---HHHHHHhC-CEEEecchHhCCCC----CCCCEEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 3 1458888887542 66667777 99999887553210 125799999985 8999999999999998
Q ss_pred Hhhhc
Q 012718 452 SFFNV 456 (458)
Q Consensus 452 ~~~~~ 456 (458)
++.++
T Consensus 369 ~~~r~ 373 (381)
T 1v2d_A 369 NSPRE 373 (381)
T ss_dssp -----
T ss_pred hhccc
Confidence 87654
No 51
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=5.2e-33 Score=267.87 Aligned_cols=322 Identities=14% Similarity=0.214 Sum_probs=252.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++++|+.+... ++|+.+.+++.+.+.....++.. ..+++++.++++++++++ +|++|+|+|+|++
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~-~i~~~~g~t~al~ 92 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDI-GIVLGNGASEIIE 92 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSC-EEEEESSHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHH
Confidence 4678999888555 57899999999988764333221 235899999999998775 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
+++.++ |+|+++.++|++ +...++..|++++.++.++++.++++++++.+++ ++++++++++||||.
T Consensus 93 ~~~~~~--------d~vi~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~ 159 (361)
T 3ftb_A 93 LSISLF--------EKILIIVPSYAE----YEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGG 159 (361)
T ss_dssp HHHTTC--------SEEEEEESCCTH----HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTB
T ss_pred HHHHHc--------CcEEEecCChHH----HHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCC
Confidence 998743 899999999995 4556677799999999998878899999999988 999999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCccc-----CC-CCCCCCcEEEecccCCCCCCc--eeEEE-EeccccccCC
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VD-VQGLDADFLVASSHKMCGPTG--IGFLF-GKSDLLSAMP 291 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~-~~~~~~~~l~ 291 (458)
++| +++|+++|+++|+++|+|++|+..... .. ....+.++++.|+||.+|++| +|+++ .++++++.+.
T Consensus 160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~ 239 (361)
T 3ftb_A 160 LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIK 239 (361)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHH
Confidence 998 667888888999999999999843321 11 223345688889999888666 79988 6766665554
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYG 370 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~ 370 (458)
.... ..+++.....++.++++.. ..+++.+++.+++++++.+.|+++++++ +..
T Consensus 240 ~~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 294 (361)
T 3ftb_A 240 AKQN-----------------------PWNINCFAEMAAINCLKDT--NYIEESLLWIKKERKRFIEELNKIGFIKRVFS 294 (361)
T ss_dssp TTSC-----------------------TTCSCHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred hhCC-----------------------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCCceecC
Confidence 3211 2356777777777776642 2367888999999999999999998988 665
Q ss_pred CCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+. ++++++.+++.+..++.+.|.++ ||.+++|..|... .++++|++++ +.+|++++++.|+++
T Consensus 295 ~~-------~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~------~~~~iRis~~---~~~~~~~l~~~l~~~ 357 (361)
T 3ftb_A 295 PH-------ANFVLCRLENISGEKLYDSLLKE-DIVIRRCCNFIGL------DDSFVRFAIK---DEKKNTKFLRALKGV 357 (361)
T ss_dssp CS-------SSEEEEEESSSCHHHHHHHHHTT-TEECEECTTSTTC------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CC-------CeEEEEEcCCCCHHHHHHHHHHC-CeEEeeCccCCCC------CCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 43 67888999877788999999998 9999998866321 2679999988 788999999999988
Q ss_pred HHh
Q 012718 451 VSF 453 (458)
Q Consensus 451 ~~~ 453 (458)
.+.
T Consensus 358 ~~~ 360 (361)
T 3ftb_A 358 ENN 360 (361)
T ss_dssp HHT
T ss_pred Hhc
Confidence 754
No 52
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-33 Score=275.30 Aligned_cols=335 Identities=18% Similarity=0.184 Sum_probs=247.0
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~ 138 (458)
++++++|+.+... +.|+.+.+++.+.+..... .+.. .....++++.+++++ |.+ ..++|++|+|+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~----~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT-----RYGP----AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC-----SCCC----TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCC----CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 3667899888765 4678889998888754210 0110 111234555555554 543 22489999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|++++
T Consensus 100 ~~a~~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 171 (388)
T 1j32_A 100 KQSIFNLMLAM----IEPGDEVIIPAPFWVSY----PEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEESSCCTHH----HHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCChhH----HHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeC
Confidence 99999999988 68999999999999954 555677899999999875 467899999999998999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----CCCCC-----CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQG-----LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----~~~~~-----~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++||||.++| +++|+++|+++|+++|+|++|+..... ..+.. .+.|+++.|+||++|++| +|++++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~ 251 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEe
Confidence 9999999987 889999999999999999999854321 11111 347899999999988888 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+.....++ ..+++.....++..+++.. ...++++.++++++++++.+.|++
T Consensus 252 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 309 (388)
T 1j32_A 252 PVPLVKAATKIQGHS---------------------TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNA 309 (388)
T ss_dssp CHHHHHHHHHHHHTT---------------------TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhc---------------------ccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988776655332211 1123333344444444421 112677888999999999999999
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++++..+. .+.++++.++ +.+..++.+.|.+++||.+.+|..| +.++++|++++ ++++++
T Consensus 310 ~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~~iRis~~--~~~~~i 373 (388)
T 1j32_A 310 MPGLECPKPD------GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAF--------GADDCIRLSYA--TDLDTI 373 (388)
T ss_dssp CTTCBCCCCC------BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGG--------TCTTBEEEECC--SCHHHH
T ss_pred CCCCcccCCC------eeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhh--------CCCCcEEEEec--CCHHHH
Confidence 8888765443 1345666665 4567889998876339999988643 23578999998 799999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|.++++++
T Consensus 374 ~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 374 KRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 53
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=3e-33 Score=269.51 Aligned_cols=321 Identities=14% Similarity=0.130 Sum_probs=249.5
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHH----hccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEA----YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++++++|+.+... ++++.+.+++.+.+.. ...++.. ..+++++++++++|++++ +|++|+|++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~-~i~~t~g~~ 92 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPS-WIIMANGSD 92 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGG-GEEEESSHH
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcc-eEEEcCCHH
Confidence 4678999988766 6789999999988765 2222211 124889999999998765 999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
+|+++++.++ +++||+|+++.++|++ +...++..|++++.++.++++.+ +++++.+ +++++++++++|
T Consensus 93 ~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~~--~~~~v~i~~p~n 160 (360)
T 3hdo_A 93 EVLNNLIRAF----AAEGEEIGYVHPSYSY----YGTLAEVQGARVRTFGLTGDFRI--AGFPERY--EGKVFFLTTPNA 160 (360)
T ss_dssp HHHHHHHHHH----CCTTCEEEEESSSCTH----HHHHHHHHTCEEEEECBCTTSSB--TTCCSSB--CSSEEEEESSCT
T ss_pred HHHHHHHHHH----hCCCCEEEEcCCChHH----HHHHHHHCCCEEEEeeCCCCCCH--HHHHhhc--CCCEEEEeCCCC
Confidence 9999999998 7899999999999995 45566677999999999776554 4443333 457999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCC--cccCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVP--HMVVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g--~~~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
|||.++|+++|.++|+++|+++|+|++|+.. ..... ....+.+++++|+||.+|++| +|++++++++++.+....
T Consensus 161 ptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~ 240 (360)
T 3hdo_A 161 PLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIR 240 (360)
T ss_dssp TTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhC
Confidence 9999999999999999999999999999842 11111 122356789999999888666 899999887776654322
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ..+.+.....++..+++... .+++.+++++++++++.+.|+++ ++++..+.
T Consensus 241 ~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-- 292 (360)
T 3hdo_A 241 D-----------------------HYNLDRLAQAACVAALRDQA--YLSECCRRIRETREWFTTELRSI-GYDVIPSQ-- 292 (360)
T ss_dssp C-----------------------SCCSCHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHT-TCEECCCS--
T ss_pred C-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCC--
Confidence 1 13466666777777776422 26788899999999999999988 88775432
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++++++.+++.+..++.+.|.++ ||.++++.. .+.++++|++++ +.+|+++++++|+++.+..
T Consensus 293 -----~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~--------~~~~~~iRis~~---~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 293 -----GNYLFATPPDRDGKRVYDGLYAR-KVLVRHFSD--------PLLAHGMRISIG---TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp -----SSEEEEECTTCCHHHHHHHHHHT-TEECBCCCS--------TTTTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred -----ccEEEEECCCCCHHHHHHHHHHC-CEEEEECCC--------CCCCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence 67888998887889999999988 999988653 123689999988 8999999999999987654
No 54
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=4.3e-33 Score=265.84 Aligned_cols=315 Identities=18% Similarity=0.207 Sum_probs=245.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++|+|+.+... ++++.+.+++.+.......++ ....+++|+.+++++|++++ +|++|+|+++++.+
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-----------FDAEPRVMRKLAEHFSCPED-NLMLVRGIDECFDR 83 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-----------TTHHHHHHHHHHHHHTSCGG-GEEEESHHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-----------CCchHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHH
Confidence 678999999655 678889999888765422221 23466899999999999865 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +||+|++++++|++ +...++..|++++.++.++++.+|++++++. .+++++++++++||||.+
T Consensus 84 ~~~~~------~gd~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~ 151 (337)
T 3p1t_A 84 ISAEF------SSMRFVTAWPGFDG----YRARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQA 151 (337)
T ss_dssp HHHHS------TTSEEEEESSSCSH----HHHHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCC
T ss_pred HHHhc------CCCeEEEeCCCcHH----HHHHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCC
Confidence 99865 79999999999995 4556677899999999988888999999876 467999999999999999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccC--CcccCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcce
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSV--PHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~--g~~~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
+|++++.++|+++++ +|+|++|+. +..+......+.+++++|+||.+|++| +|++++++++++.+.....
T Consensus 152 ~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~----- 225 (337)
T 3p1t_A 152 LSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW----- 225 (337)
T ss_dssp CCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC-----
T ss_pred CCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC-----
Confidence 999999999999997 556999972 222222333457899999999888666 7999999887766543211
Q ss_pred EeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc
Q 012718 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 380 (458)
.++++...+.++..+++.... +++..+++.++++++.+.|+++ ++++..+. +
T Consensus 226 ------------------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-------~ 277 (337)
T 3p1t_A 226 ------------------FCNVGTLDLHALEAALDNDRA--REAHIAKTLAQRRRVADALRGL-GYRVASSE-------A 277 (337)
T ss_dssp ------------------TTCSCHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS-------S
T ss_pred ------------------CCCCCHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHHHC-cCEECCCC-------C
Confidence 235666666666666554222 4566677778889999999887 77664433 6
Q ss_pred cEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 381 ALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 381 ~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+++++..+ +..++.+.|.++ ||.+++|..| +.++++|+|++ +.+|+++++++|+++.+
T Consensus 278 ~~~~~~~~--~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 278 NFVLVENA--AGERTLRFLRER-GIQVKDAGQF--------GLHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp SEEEEECT--TTHHHHHHHHHT-TEECEEGGGG--------TCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred eEEEEEcC--CHHHHHHHHHHC-CeEEEECccC--------CCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 78888776 356788888888 9999998754 34689999988 78999999999998764
No 55
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=2e-33 Score=272.44 Aligned_cols=331 Identities=15% Similarity=0.142 Sum_probs=250.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHh-ccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTK 136 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~ 136 (458)
+++++.|..+... +.++.+.+++.+.+... ..++. .. +++++.++++++ ++++ +|++|+
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----------~~-~~lr~~la~~~~~~~~~~~~~~-~i~~t~ 88 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-----------DG-SLLSQATAEFYADRYGYQARPE-WIFPIP 88 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-----------SS-CCHHHHHHHHHHHHHCCCCCGG-GEEEES
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-----------CC-HHHHHHHHHHHHHHhCCCCCHH-HEEEeC
Confidence 4678899888655 67899999999888652 11110 11 356777777776 5554 999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEec
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
|+++|++.++.++ +++||+|+++.++|++. ...++..|++++.++.+++ +|++++++.++++++++++++
T Consensus 89 g~~~a~~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~ 158 (377)
T 3fdb_A 89 DVVRGLYIAIDHF----TPAQSKVIVPTPAYPPF----FHLLSATQREGIFIDATGG--INLHDVEKGFQAGARSILLCN 158 (377)
T ss_dssp CHHHHHHHHHHHH----SCTTCCEEEEESCCTHH----HHHHHHHTCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEES
T ss_pred ChHHHHHHHHHHh----cCCCCEEEEcCCCcHhH----HHHHHHcCCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeC
Confidence 9999999999988 68999999999999954 5556677999999999876 899999999999999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCC---CCCcEEEecccCCCCCCc--eeEEEE-
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQG---LDADFLVASSHKMCGPTG--IGFLFG- 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~---~~~d~~~~s~~K~~gp~g--~G~l~~- 282 (458)
++||||.++| +++|+++|+++|+++|+|++|+.... +.++.. .+.++++.|+||.+|++| +|++++
T Consensus 159 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 238 (377)
T 3fdb_A 159 PYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFS 238 (377)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeC
Confidence 9999999997 66777889999999999999985221 122222 235689999999888766 898887
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... ...++++.....++..+++...+ .++++.++++++++++.+.|++
T Consensus 239 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 239 NPSDAEHWQQLSP---------------------VIKDGASTLGLIAAEAAYRYGTD-FLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp SHHHHHHHHHSCH---------------------HHHCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---------------------hhcCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555432211 11235666666666666664322 2678889999999999999988
Q ss_pred -CCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 -IPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
+|++++..+.. +.++++.++.. ...++.+.+.+++||.+++|..|... .++++|++++ .+++++
T Consensus 297 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~------~~~~~Ris~~--~~~e~i 362 (377)
T 3fdb_A 297 RIPGAKITPMQA------TYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED------GTGFCRLNFA--TSREVL 362 (377)
T ss_dssp HSTTCEECCCSB------CSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG------GTTEEEEECC--SCHHHH
T ss_pred hCCCceEecCCe------eEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC------CCCEEEEEeC--CCHHHH
Confidence 78898876541 44667888752 23567777665559999999866543 2689999999 589999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|.++++++
T Consensus 363 ~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 363 EEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
No 56
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=1.3e-33 Score=276.45 Aligned_cols=335 Identities=16% Similarity=0.173 Sum_probs=251.0
Q ss_pred CCCeEEecCCCC---C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEE
Q 012718 65 SKKLVYLDNAAT---S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~---~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~ 134 (458)
++++++|+.+.. . +.++.+.+++.+.+..... .+. ......++++.+++++ ++++ ++|++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~----~~~g~~~l~~~la~~l~~~~g~~~~~-~~v~~ 106 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHN-----YYG----DSEGLPELRKAIVEREKRKNGVDITP-DDVRV 106 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCC-----SCC----CTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEE
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCC-----CCC----CCCCcHHHHHHHHHHHHHhcCCCCCH-HHEEE
Confidence 367899999877 3 5678899999888764210 010 0112335666666666 3444 49999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+++|+.+++.++ +++||+|++++++|++ +...++..|++++.++.++ ++.+|++++++.+++++++|
T Consensus 107 t~g~~~al~~~~~~l----~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v 178 (406)
T 1xi9_A 107 TAAVTEALQLIFGAL----LDPGDEILVPGPSYPP----YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAI 178 (406)
T ss_dssp ESHHHHHHHHHHHHH----CCTTCEEEEEESCCHH----HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEE
T ss_pred cCChHHHHHHHHHHh----CCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEE
Confidence 999999999999988 6799999999999985 4556677899999999874 35679999999999899999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC--CCC-cEEEecccCCCCCCc--eeEEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG--LDA-DFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~--~~~-d~~~~s~~K~~gp~g--~G~l~ 281 (458)
++++++||||.++| +++|+++|+++|+++|+|++|+.+.. +..+.. .+. |++++|+||++|++| +|+++
T Consensus 179 ~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (406)
T 1xi9_A 179 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMY 258 (406)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred EEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEE
Confidence 99999999999988 88999999999999999999986432 112111 345 889999999998777 89999
Q ss_pred --Eec----cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 282 --GKS----DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 282 --~~~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
.++ ++++.+..... +. ++++.....++.++++...+ .++++.+++++++++
T Consensus 259 ~~~~~~~~~~l~~~l~~~~~---------------------~~-~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~ 315 (406)
T 1xi9_A 259 FVDPENKLSEVREAIDRLAR---------------------IR-LCPNTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDY 315 (406)
T ss_dssp EECTTCTTHHHHHHHHHHHH---------------------HT-CCSCSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHH
T ss_pred EecCchhHHHHHHHHHHHHH---------------------hh-cCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHH
Confidence 777 66655542211 11 24455555666666642222 267888999999999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC---CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEee
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE---NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASL 431 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~ 431 (458)
+.+.|++++++++..+. .+.++++.++ +.+..++.+.|. ++ ||.+.+|..|... .++++||++
T Consensus 316 l~~~L~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~-gi~v~~g~~f~~~------~~~~lRis~ 382 (406)
T 1xi9_A 316 IYKRLNEIPGISTTKPQ------GAFYIFPKIEVGPWKNDKEFVLDVLHNA-HVLFVHGSGFGEY------GAGHFRAVF 382 (406)
T ss_dssp HHHHHHTSTTEECCCCC------BSSEECCEECSCSCSSHHHHHHHHHHHH-CEECEEGGGGCGG------GTTBEEEEC
T ss_pred HHHHHHhCCCCeeecCC------eeEEEEEecCccCCCCHHHHHHHHHHhC-CEEEeCchhcCCC------CCCEEEEEe
Confidence 99999998888875443 1345666776 456788998887 66 9999988755321 167999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 432 HFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 432 ~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+ ++++++++++++|.++++++.
T Consensus 383 ~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 383 L--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHC-
T ss_pred c--CCHHHHHHHHHHHHHHHHHHh
Confidence 8 899999999999999988653
No 57
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=5.5e-34 Score=277.55 Aligned_cols=327 Identities=17% Similarity=0.176 Sum_probs=247.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~ 138 (458)
++++++|+.+... +.++.+.+++.+.+..... .+. ......++++.+++++ |.+ ..++|++|+|+
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~----~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~ 110 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEV-----KYT----DPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA 110 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCC-----CCC----CTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCC-----CCC----CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence 4678999988765 5678899998888754210 010 0112346667777776 653 22499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
|+|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|++++
T Consensus 111 t~al~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 111 KQALFNAFMAL----LDPGDEVIVFSPVWVSY----IPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 99999999988 67899999999999964 445567799999999875 467899999999988999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC---CCC-CCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD---VQG-LDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
++||||.++| +++|+++|+++|+++|+|++|+.+.. +.+ +.. .+.|++++|+||++|++| +|++++++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~ 262 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence 9999999998 88999999999999999999996543 112 221 468999999999988777 89999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+.....++ ..+.+.....++.. .+.. +++++.++++++++++.+.|+++
T Consensus 263 ~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~---~l~~-~~~~~~~~~~~~~~~l~~~L~~~- 316 (389)
T 1o4s_A 263 KVATAVSKIQSHT---------------------TSCINTVAQYAALK---ALEV-DNSYMVQTFKERKNFVVERLKKM- 316 (389)
T ss_dssp HHHHHHHHHHHHH---------------------TCSCCHHHHHHHHH---HTTC-CCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhhhc---------------------ccCCCHHHHHHHHH---HHhc-cHHHHHHHHHHHHHHHHHHHHhc-
Confidence 8776665432211 11233333333333 3333 37888899999999999999887
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
++++..+. .+.++++.++ .+..++.+.|. ++ ||.+.+|..| +.++++|++++ .++++++++
T Consensus 317 g~~~~~~~------~~~~~~~~~~-~~~~~l~~~l~~~~-gi~v~~g~~f--------~~~~~~Ris~~--~~~~~l~~~ 378 (389)
T 1o4s_A 317 GVKFVEPE------GAFYLFFKVR-GDDVKFCERLLEEK-KVALVPGSAF--------LKPGFVRLSFA--TSIERLTEA 378 (389)
T ss_dssp TCCCCCCS------BSSEEEEECS-SCHHHHHHHHHHHH-CEECEEGGGG--------TCTTEEEEECC--SCHHHHHHH
T ss_pred CCeeecCC------cceEEEEeCC-CCHHHHHHHHHHHC-CEEEeCchhc--------CCCCeEEEEEe--CCHHHHHHH
Confidence 77665432 1457788886 56788999987 66 9999988643 22569999999 599999999
Q ss_pred HHHHHHHHH
Q 012718 444 IHALNETVS 452 (458)
Q Consensus 444 ~~~l~~~~~ 452 (458)
+++|.++++
T Consensus 379 l~~l~~~l~ 387 (389)
T 1o4s_A 379 LDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 58
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=5.4e-34 Score=276.47 Aligned_cols=327 Identities=14% Similarity=0.166 Sum_probs=252.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC
Q 012718 103 HFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG 182 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g 182 (458)
++.+..+.+.++++++.+++++|++ +.++||+|+|+|++.++..+ ++||+|++++++|++. .+..+++..|
T Consensus 27 ~h~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~~-----~~gd~vi~~~~~~~~~--~~~~~~~~~g 97 (379)
T 3ke3_A 27 NHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQL-----TIDEDCLIIRNGWFSY--RWTQILEKGK 97 (379)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHHH-----CTTCEEEEEECSHHHH--HHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHhC-----CCCCeEEEEeCCchhH--HHHHHHHHhC
Confidence 3445667788889999999999987 38999999999999998655 5899999999999875 4455666666
Q ss_pred --CeEEEEeCCCC---------CCCCHHHHHHhhc-CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccc
Q 012718 183 --ANLKFLNLNDD---------ESPDLDKLKEMLS-RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQ 247 (458)
Q Consensus 183 --~~~~~v~~~~~---------~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~ 247 (458)
.+++.++.+.. +.+|++++++.++ .++++|++++++|++|.+.| +++|.++|+++|+++|+|+++
T Consensus 98 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~ 177 (379)
T 3ke3_A 98 FAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIA 177 (379)
T ss_dssp CSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 47888876532 2579999999995 48899999999999999999 999999999999999999999
Q ss_pred cCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCC-------CCCCCccCC
Q 012718 248 SVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF-------ADPPSRFEA 319 (458)
Q Consensus 248 ~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~ 319 (458)
+ |..++++..+++|++++|+||+ .||.|+|++++++++++.+.+...... +.+...| ......+ .
T Consensus 178 ~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~-~ 250 (379)
T 3ke3_A 178 S-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCF-----SLDLKQWLTIMRAYENGGHAY-H 250 (379)
T ss_dssp C-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCS-----TTCHHHHHHHHHHHHTTSCCC-S
T ss_pred c-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCce-----eecHHHHHHHHHhhhccCCCC-C
Confidence 9 8888887777899999999995 568889999999987765543211000 0000000 0000111 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeCCCChHHHHHH
Q 012718 320 GTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVENIHPTDIATL 398 (458)
Q Consensus 320 gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~ 398 (458)
+|++...++++.++++++.+.|++++.++.+++++++.+.|+++ ++++..+.. .+.+ +..+..++. ...+.+.
T Consensus 251 ~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~----~~~~~i~~~~~~~~-~~~~~~~ 324 (379)
T 3ke3_A 251 ATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEG----FEAPGVVVSYTERD-DMHKGSA 324 (379)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTT----CBCSSEEEEECSCH-HHHSSHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCcc----ccCceEEEEccCCc-chHHHHH
Confidence 58999999999999999998899999999999999999999988 887765432 2345 444554431 2223667
Q ss_pred HhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 399 LDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 399 l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|.++ ||.+.+|..|.... ....+.+|+|++.++|++||++++++|+++++++.
T Consensus 325 L~~~-Gi~v~~g~~~~~~~---~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 325 FAEA-GLQIAAGVPLKVGE---PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp HHHT-TCCCEECCCCSSCC---CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHC-CeEEeCCccccccc---cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 7777 99999887653210 01157899999999999999999999999998764
No 59
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-32 Score=274.54 Aligned_cols=375 Identities=15% Similarity=0.108 Sum_probs=274.1
Q ss_pred CCCCccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHH
Q 012718 40 TSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK 119 (458)
Q Consensus 40 ~~~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (458)
...+...+.+.+++.+. ++ +...+++....++.+++.+.+++.+.+.....+. .......+..+++++.
T Consensus 35 ~~~~~~~~~~~~~~~i~-l~-----gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~-----~~~p~~~~le~~~~~~ 103 (502)
T 3hbx_A 35 NSIPKEAAYQIINDELM-LD-----GNPRLNLASFVTTWMEPECDKLIMSSINKNYVDM-----DEYPVTTELQNRCVNM 103 (502)
T ss_dssp SCCCHHHHHHHHHHHGG-GS-----CCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCT-----TTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc-cC-----CCCCceeccccCCCCCHHHHHHHHHHhccCCCCh-----hcChhHHHHHHHHHHH
Confidence 34444444455544432 22 1233445444456778888888887654322211 2223456777789999
Q ss_pred HHHHcCCC--CCC--cEEEeCChhHHHHHHHHHcCCCCC----CCCC-----EEEEcCCCCccchHHHHHHHHHcCCeEE
Q 012718 120 VAAFINAS--DSG--EIVFTKNATEAINLVAYSWGLSNL----KSGD-----EVILTVAEHHSAIVPWQLVAQKTGANLK 186 (458)
Q Consensus 120 la~~~g~~--~~~--~v~~t~g~t~a~~~~~~~l~~~~~----~~g~-----~vl~~~~~~~s~~~~~~~~a~~~g~~~~ 186 (458)
+++++|++ +++ ..++|+|+|+|+.+++.++..... ++|+ .|+++.++|.+ +...++..|++++
T Consensus 104 la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s----~~~~~~~~G~~~~ 179 (502)
T 3hbx_A 104 IAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC----WEKFARYFEVELK 179 (502)
T ss_dssp HHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH----HHHHHHHTTCEEE
T ss_pred HHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH----HHHHHHHcCceeE
Confidence 99999998 432 234699999999999887631100 0154 89999999995 5677788899999
Q ss_pred EEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc------CcEEEEeccccCCc-------c
Q 012718 187 FLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV------GAKVLVDACQSVPH-------M 252 (458)
Q Consensus 187 ~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~------~~~vivD~a~~~g~-------~ 252 (458)
.++++++ +.+|++++++++++++++|++++++|+||.+.|+++|.++|+++ |+++|+|++|+.+. .
T Consensus 180 ~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~ 259 (502)
T 3hbx_A 180 EVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPEL 259 (502)
T ss_dssp EECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC
T ss_pred EEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccc
Confidence 9999876 88999999999999999999999999999999999999999999 99999999998443 2
Q ss_pred cCCCCCCCCcEEEecccCCC-CCCceeEEEEecc-cccc-CC---CccccCcceEeeecCCCCCCCCCCccC-CCCCCHH
Q 012718 253 VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSD-LLSA-MP---PFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIG 325 (458)
Q Consensus 253 ~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~-~~~~-l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~ 325 (458)
+.++...++|++++|+||++ +|.|+|+++++++ .+.. +. .+.. +.. ..+. .++.+..
T Consensus 260 ~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~-~~~---------------~~~~~~~sr~~~ 323 (502)
T 3hbx_A 260 EWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLG-ADQ---------------PTFTLNFSKGSS 323 (502)
T ss_dssp CCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSS-SCE---------------EECCSCCSCBSH
T ss_pred ccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCccccc-CCC---------------CCccccCCchHH
Confidence 34444457999999999955 7899999998764 3321 11 1111 110 0111 2455555
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhh
Q 012718 326 EAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQ 402 (458)
Q Consensus 326 ~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~ 402 (458)
.++++..++..+...++.++.++..+++++|.+.|.+++++++..+.+. .++++|++++ .+..++.+.|.++
T Consensus 324 ~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~-----~~~v~f~~~~~~~~~~~~l~~~L~~~ 398 (502)
T 3hbx_A 324 QVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG-----VPLVAFSLKDSSCHTEFEISDMLRRY 398 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS-----SSEEEEEESSCSSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC-----ceEEEEEecCCCcCCHHHHHHHHHhC
Confidence 6788888888887778899999999999999999999988998866222 7799999874 4556899999988
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
||.++...... .......+||+++..++.+|++++++.|+++++++++
T Consensus 399 -Gi~v~~~~~p~-----~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 399 -GWIVPAYTMPP-----NAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp -TCBCCEEECCT-----TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -CcEEeeccCCc-----ccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99875322111 1122468999999999999999999999999987754
No 60
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=2.7e-33 Score=275.22 Aligned_cols=338 Identities=17% Similarity=0.173 Sum_probs=254.5
Q ss_pred CCeEEecCCCC-----CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------------CCC
Q 012718 66 KKLVYLDNAAT-----SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------------ASD 128 (458)
Q Consensus 66 ~~~i~l~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------------~~~ 128 (458)
+++++|+.+.. .++++.+.+++.+.+.....+. + .......++|++++++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~----y----~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG----Y----FPTVGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSS----C----CCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCC----c----CCCCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 56799998863 4778999999998876421110 0 111234578888888887 444
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhc
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS 206 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~ 206 (458)
+ +|++|+|+++|+.+++.++ +++||+|+++.++|++ +...++..|++++.++.+++ +.+|++++++.++
T Consensus 105 ~-~v~~~~g~~~al~~~~~~l----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 175 (416)
T 1bw0_A 105 D-NVVLCSGGSHGILMAITAI----CDAGDYALVPQPGFPH----YETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD 175 (416)
T ss_dssp G-GEEEESHHHHHHHHHHHHH----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred c-eEEEeCChHHHHHHHHHHh----CCCCCEEEEcCCCcHh----HHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc
Confidence 4 9999999999999999988 6899999999999995 45566778999999998653 5689999999998
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCC----c----ccCCCCC---CCCcEEEecccCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP----H----MVVDVQG---LDADFLVASSHKMC 272 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g----~----~~~~~~~---~~~d~~~~s~~K~~ 272 (458)
++++++++++++||||.++| +++|+++|+++|+++|+|++|+.. . ...++.. .+.+++++|+||.+
T Consensus 176 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (416)
T 1bw0_A 176 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL 255 (416)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC
Confidence 88999999999999999999 899999999999999999999852 2 1122222 23467889999988
Q ss_pred CCCc--eeEEEEecc--ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 012718 273 GPTG--IGFLFGKSD--LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348 (458)
Q Consensus 273 gp~g--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 348 (458)
+.+| +|+++++++ +++.+....... .....+++.....++..+++......++++.++
T Consensus 256 ~~~Glr~G~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 317 (416)
T 1bw0_A 256 VVPGWRLGWLLYVDPHGNGPSFLEGLKRV------------------GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAK 317 (416)
T ss_dssp SCGGGCCEEEEEECTTCSCHHHHHHHHHH------------------HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCCCceEEEEEeeCchhhHHHHHHHHHHH------------------hccccCCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7777 899999874 444332110000 001235666666777666664323346788899
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHh-hhcCeEeccCCCCChhhHhhc
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~ 421 (458)
++++++++.+.|++++++++..+. .+.++++.++. .+..++.+.|. ++ ||.+++|..|
T Consensus 318 ~~~~~~~l~~~L~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~f-------- 382 (416)
T 1bw0_A 318 IEESAMYLYNHIGECIGLAPTMPR------GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEE-NVQVLPGTIF-------- 382 (416)
T ss_dssp HHHHHHHHHHHHTTSTTEEECCCC------BTTEEEEEECGGGBSSCCSHHHHHHHHHHHH-CEECEEGGGG--------
T ss_pred HHHHHHHHHHHHHhCCCCcccCCC------eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHC-CEEEeccccc--------
Confidence 999999999999988898876543 15678888762 45678888875 66 9999988744
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.++++|++++ .+++++++++++|.+++++.+
T Consensus 383 ~~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 383 HAPGFTRLTTT--RPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp TCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred CCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 33679999997 689999999999999998754
No 61
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.8e-33 Score=274.88 Aligned_cols=337 Identities=16% Similarity=0.150 Sum_probs=256.1
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.++.|..+.. + ..++.+.+++.+.+..+.... ......++..+..+++++.+++++|.+ +.+++++|++|+.
T Consensus 43 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~ 117 (399)
T 3tqx_A 43 KEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGM--ASVRFICGTQTIHKELEKDISEFLGTD---DTILYSSCFDANG 117 (399)
T ss_dssp EEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCC--CSCCCCCCCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred eeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCC--CCcCccccCchHHHHHHHHHHHHHCCC---cEEEECchHHHHH
Confidence 44566665543 3 357899999999887643211 111111233566788999999999986 4555566788999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI 217 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~ 217 (458)
.++.++ +++||.|+++.++|++. ...++..|++++.++.. |++++++.+++ ++++|+++++
T Consensus 118 ~~l~~~----~~~gd~v~~~~~~~~~~----~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~v~~~~~ 184 (399)
T 3tqx_A 118 GLFETL----LGPEDAIISDELNHASI----IDGIRLCKAQRYRYKNN-----AMGDLEAKLKEADEKGARFKLIATDGV 184 (399)
T ss_dssp TTHHHH----CCTTCEEEEETTCCHHH----HHHHHSCCSEEEEECTT-----CTTHHHHHHHHHHTTTCSSEEEEEESE
T ss_pred HHHHHh----cCCCCEEEECCcccHHH----HHHHHHcCCceeEeCCC-----CHHHHHHHHHhhhccCCCceEEEEeCC
Confidence 999888 78999999999999954 45566779999999863 77788888765 7899999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC------CCC--CCCcEEEecccCCCC-CCceeEEEEeccccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD------VQG--LDADFLVASSHKMCG-PTGIGFLFGKSDLLS 288 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~------~~~--~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~ 288 (458)
+||||.+.|+++|.++|+++|+++|+|++|+.+....+ ... .++|++++|+||++| +.| |+++.++++++
T Consensus 185 ~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~ 263 (399)
T 3tqx_A 185 FSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIE 263 (399)
T ss_dssp ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHH
Confidence 99999999999999999999999999999986543221 111 257999999999777 776 99999998776
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+......+ ...++++...+.++..+++... .+.+++.++++++++++.+.|+++ ++++
T Consensus 264 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 322 (399)
T 3tqx_A 264 WLRNRSRPY-------------------LFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQL 322 (399)
T ss_dssp HHHHHCHHH-------------------HSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCB
T ss_pred HHHHhCcce-------------------eccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 655321111 1135777777778888888774 357899999999999999999887 7766
Q ss_pred eCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+. ++++++.+++ .+..++.+.|.++ ||.+.++.++..+ ...+++|++++.+++++|+++++++|
T Consensus 323 ~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~-----~~~~~iRi~~~~~~~~~~i~~~~~~l 389 (399)
T 3tqx_A 323 VPGN-------HPIIPVMLGDAQLATNMADHLLQE-GIYVVGFSYPVVP-----MGKARIRVQMSAVHTQQQLDRAIEAF 389 (399)
T ss_dssp CCCS-------SSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTTSC-----TTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCC-------CCEEEEEeCCHHHHHHHHHHHHHC-CCEEeeeCCCCCC-----CCCceEEEEeecCCCHHHHHHHHHHH
Confidence 5332 7788888864 2467899999988 9999876533211 12469999999889999999999999
Q ss_pred HHHHHhhh
Q 012718 448 NETVSFFN 455 (458)
Q Consensus 448 ~~~~~~~~ 455 (458)
+++++++.
T Consensus 390 ~~~~~~~~ 397 (399)
T 3tqx_A 390 GQVGKKLG 397 (399)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99998764
No 62
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=2.7e-33 Score=272.92 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=247.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
++++++|+.+... +.++.+.+++.+.+.... .++......+++|+.++++++ ++++ +|++|+|
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~v~~t~g 99 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLETDA---------LGYTVALGLPALRQRIARLYGEWYGVDLDPG-RVVITPG 99 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHCCCCCGG-GEEEESS
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC---------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEecC
Confidence 4678999988766 557888999888765311 111112234567777777764 4444 9999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+++++.++ +++||+|+++.++|++. ...++..|++++.++++++ +.+|++++++. ++++|+++
T Consensus 100 ~~~al~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~ 168 (391)
T 3h14_A 100 SSGGFLLAFTAL----FDSGDRVGIGAPGYPSY----RQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVA 168 (391)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEE
T ss_pred hHHHHHHHHHHh----cCCCCEEEEcCCCCccH----HHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEEC
Confidence 999999999998 68999999999999954 5566778999999999865 36799999876 78999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC-CCCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG-LDADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.... +..... .+.+++++|+||.+|+.| +|++++++++
T Consensus 169 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 248 (391)
T 3h14_A 169 SPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQ 248 (391)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGG
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHH
Confidence 99999999999 88899999999999999999984321 222222 246789999999888666 8999999887
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
++.+..... ...++++.....++.++++ ....+++.+++++++++++.+.|+++ ++
T Consensus 249 ~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-~~ 304 (391)
T 3h14_A 249 VRVVERIAQ---------------------NMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKA-GF 304 (391)
T ss_dssp HHHHHHHHH---------------------HTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHh---------------------hhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 766543322 1124566666666666666 22336788899999999999999887 43
Q ss_pred EEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
....++. .+.++++.++ +.+..++.+.|.+++||.+++|..|..+ ..++++|++++. +++|+++++
T Consensus 305 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----~~~~~iRis~~~--~~~~i~~~l 372 (391)
T 3h14_A 305 TRIAPPD-----GAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPE-----RGAGTLRFSYAR--ATADIEEGL 372 (391)
T ss_dssp CCBCCCC-----BTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTT-----TGGGEEEEECCS--CHHHHHHHH
T ss_pred CcccCCC-----eeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCC-----CCCCeEEEEecC--CHHHHHHHH
Confidence 3322221 1457788886 4577889888776559999999877542 115799999995 889999999
Q ss_pred HHHHHHHHhhh
Q 012718 445 HALNETVSFFN 455 (458)
Q Consensus 445 ~~l~~~~~~~~ 455 (458)
++|.+++++..
T Consensus 373 ~~l~~~~~~~~ 383 (391)
T 3h14_A 373 DRLEAFMQARG 383 (391)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99999998654
No 63
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=8.4e-33 Score=270.35 Aligned_cols=336 Identities=14% Similarity=0.145 Sum_probs=253.9
Q ss_pred CCeEEecCCCCCC--CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAATSQ--KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
..++.|..+..-. .++.+.+++.+.+..+.. .+ +.+....+.....+++++.+++++|.+ +.+++++||+++.
T Consensus 45 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~-~~-~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~ 119 (401)
T 1fc4_A 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGF-GM-ASVRFICGTQDSHKELEQKLAAFLGME---DAILYSSCFDANG 119 (401)
T ss_dssp CEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCS-CC-CSCHHHHCCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred ccEEEeeccCcccccCCHHHHHHHHHHHHHhCC-CC-CCCCcccCCcHHHHHHHHHHHHHhCCC---cEEEeCChHHHHH
Confidence 4555565553322 489999999998865322 11 111222222466788999999999987 4456666788999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI 217 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~ 217 (458)
.++.++ +++||.|+++.+.|.+.. ..++..|++++.++. .|++++++.+++ ++++|+++++
T Consensus 120 ~~~~~~----~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 186 (401)
T 1fc4_A 120 GLFETL----LGAEDAIISDALNHASII----DGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGV 186 (401)
T ss_dssp TTHHHH----CCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred HHHHHH----cCCCCEEEEcchhHHHHH----HHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 999887 689999999999998553 345677999998874 388999988875 7899999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-c--------CCCCCCCCcEEEecccCCC-CCCceeEEEEecccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V--------VDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~--------~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~ 287 (458)
+||||.+.|+++|.++|+++|+++|+|++|+.+.. + +++.. +.|++++|+||++ |+.| |+++++++++
T Consensus 187 ~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~ 264 (401)
T 1fc4_A 187 FSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVV 264 (401)
T ss_dssp ETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHH
Confidence 99999999999999999999999999999975543 2 33332 5799999999977 7775 9999998877
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
+.+......+ .+ .++++...+.++..+++.+.. .+++.++++++++++.+.|+++ +++
T Consensus 265 ~~l~~~~~~~------------------~~-~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~ 322 (401)
T 1fc4_A 265 EWLRQRSRPY------------------LF-SNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAA-GFT 322 (401)
T ss_dssp HHHHHHCHHH------------------HH-SCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHhCcCc------------------ee-CCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 6654321100 01 346777778888888887754 4778899999999999999987 776
Q ss_pred EeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHH
Q 012718 368 IYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~ 446 (458)
+. +. .++++++.+++ .+..++.+.|.++ ||.++++..|..+. ..+++|++++.+++++|+++++++
T Consensus 323 ~~-~~------~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~ 389 (401)
T 1fc4_A 323 LA-GA------DHAIIPVMLGDAVVAQKFARELQKE-GIYVTGFFYPVVPK-----GQARIRTQMSAAHTPEQITRAVEA 389 (401)
T ss_dssp BC-CS------SSSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTSSCT-----TCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cc-CC------CCCEEEEEcCChHHHHHHHHHHHHC-CcEEeeecCCCCCC-----CCceEEEEeCCCCCHHHHHHHHHH
Confidence 65 21 26788898864 3467888999988 99999887553211 146899999988999999999999
Q ss_pred HHHHHHhhhc
Q 012718 447 LNETVSFFNV 456 (458)
Q Consensus 447 l~~~~~~~~~ 456 (458)
|++++++++.
T Consensus 390 l~~~~~~~~~ 399 (401)
T 1fc4_A 390 FTRIGKQLGV 399 (401)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhCC
Confidence 9999987653
No 64
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=4.2e-32 Score=269.37 Aligned_cols=347 Identities=13% Similarity=0.052 Sum_probs=257.0
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC----cEEEeCChhHHHHHHHHHcCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG----EIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~----~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
++.++.+.+++.+++.. +. ..+..+....+..+++++.+++++|.+.+. .+++|+|+|+|+.+++.++...
T Consensus 52 ~~~~~~v~e~~~~a~~~---~~--~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~ 126 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINK---NW--IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR 126 (452)
T ss_dssp CCCCHHHHHHHHHTTTC---BT--TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---CC--CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence 35566777777665532 21 112223456677888999999999998652 4899999999999998876210
Q ss_pred C----CCC-----CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 153 N----LKS-----GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 153 ~----~~~-----g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
. .++ +++|++++ .|. .+...++..|++++.+++++ ++.+|+++|++++++++++|++++++|+||
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~----~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQI----CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTG 201 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCH----HHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTC
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcH----HHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCc
Confidence 0 003 35899999 777 55777788899999999987 689999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhc------CcEEEEeccccCCcc-------cCCCCCCCCcEEEecccCC-CCCCceeEEEEecc-cc
Q 012718 223 SILPIEEIVHWSHDV------GAKVLVDACQSVPHM-------VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSD-LL 287 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~------~~~vivD~a~~~g~~-------~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~-~~ 287 (458)
.+.|+++|+++|+++ |+++|+|++|+.+.. +.++...++|++++|+||+ ++|.|+|+++++++ .+
T Consensus 202 ~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~ 281 (452)
T 2dgk_A 202 NYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 281 (452)
T ss_dssp BBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred ccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHH
Confidence 999999999999995 999999999987643 2334344789999999995 57888999999864 33
Q ss_pred -ccCC--CccccCcceEeeecCCCCCCCCCCcc-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 288 -SAMP--PFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 288 -~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+.+. +.+.++.. ..+ ..++.+....+++.+++..+...+++++.++..++++++.+.|+++
T Consensus 282 ~~~~~~~~~~~~~~~---------------~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~ 346 (452)
T 2dgk_A 282 PQELVFNVDYLGGQI---------------GTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL 346 (452)
T ss_dssp CGGGCEEECCTTCCE---------------EECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCccccCCCC---------------CCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3332 11111100 001 1245555566777788887777788999999999999999999999
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCC-----CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVEN-----IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
+++++..+... ....++++|++++ .+..++.+.|.++ ||.++... .+. .+...+++|++++.++|.+
T Consensus 347 ~~~~~~~~~~~--~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~--~~~---~~~~~~~lRis~~~~~t~e 418 (452)
T 2dgk_A 347 GPYEFICTGRP--DEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFT--LGG---EATDIVVMRIMCRRGFEMD 418 (452)
T ss_dssp SSEEEEEECCT--TTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEE--CST---TCTTCEEEEEECCTTCCHH
T ss_pred CCeEEecCCCC--CCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeee--CCc---ccCCeEEEEEEecCCCCHH
Confidence 88998754210 1236799999875 2447899999988 99765311 110 1122558999999989999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 012718 439 DVDEFIHALNETVSFFNV 456 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~~ 456 (458)
|++++++.|+++++++++
T Consensus 419 ~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 419 FAELLLEDYKASLKYLSD 436 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999877654
No 65
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=4.6e-33 Score=272.06 Aligned_cols=335 Identities=13% Similarity=0.067 Sum_probs=250.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH----cC--CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----IN--ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~g--~~~~~~v~~t~g~ 138 (458)
+++++|+.+..+ ++++.+.+++.+.+.... . .+.. . ..++++.++++ +| .+++ +|++|+|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~~--~----~~~l~~~la~~l~~~~g~~~~~~-~v~~t~g~ 98 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETV-L----GYTG--P----TEEYKKTVKKWMKDRHQWDIQTD-WIINTAGV 98 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-C----SSBC--C----CHHHHHHHHHHHHHHHCCCCCGG-GEEEESSH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCC-C----CCCC--C----cHHHHHHHHHHHHHHhCCCCChh-hEEEcCCH
Confidence 356788777665 568899999998876411 0 0110 1 33566666665 46 4443 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCC--CCCHHHHHHhhc-CCceEEEE
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDE--SPDLDKLKEMLS-RKTKLVVI 214 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~--~~d~~~l~~~l~-~~~~~v~~ 214 (458)
++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+ +++ .+|++++++.++ .++++|++
T Consensus 99 ~~a~~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 99 VPAVFNAVREF----TKPGDGVIIITPVYYPF----FMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp HHHHHHHHHHH----CCTTCEEEECSSCCTHH----HHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCcHhH----HHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 99999999998 67899999999999954 55566779999999886 333 479999999998 68899999
Q ss_pred ecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCC-----CCCcEEEecccCCCCCCc--eeEE
Q 012718 215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQG-----LDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 215 ~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~-----~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
++++||||.++| +++|+++|+++|+++|+|++|+.... +.++.. .+.++++.|+||.+|++| +|++
T Consensus 171 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 250 (399)
T 1c7n_A 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI 250 (399)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEE
Confidence 999999999999 89999999999999999999985321 223322 245789999999888667 8999
Q ss_pred EEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 281 ~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++++ ++++.+...... +..++++.....++.++++... ..+++++++++++++++.+.
T Consensus 251 ~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~ 309 (399)
T 1c7n_A 251 IIKNPDIRERFTKSRDA--------------------TSGMPFTTLGYKACEICYKECG-KWLDGCIKVIDKNQRIVKDF 309 (399)
T ss_dssp ECCCHHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHhh--------------------cccCCCCHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHH
Confidence 9974 566655433221 1123567766666666666422 23678888999999999999
Q ss_pred Hhc-CCCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 360 LLS-IPNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 360 L~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
|++ +|++++..+. .+.++++.++. .+..++.+.|. ++ ||.+++|..|... .++++||+++.
T Consensus 310 L~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~~~~~------~~~~iRis~~~-- 374 (399)
T 1c7n_A 310 FEVNHPEIKAPLIE------GTYLQWIDFRALKMDHKAMEEFMIHKA-QIFFDEGYIFGDG------GIGFERINLAA-- 374 (399)
T ss_dssp HHHHCTTSBCCCCS------BSSEEEEECGGGCCCHHHHHHHHHHTT-CCCCEEGGGGCGG------GTTEEEEECCS--
T ss_pred HHhhCCCCeEecCC------ceEEEEEEcccCCCCHHHHHHHHHHhC-CEEEeCccccCCC------CCCeEEEEecc--
Confidence 988 7887765433 13466788873 57788999997 56 9999998765421 26799999995
Q ss_pred CHHHHHHHHHHHHHHHHhhhc
Q 012718 436 TKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~~ 456 (458)
.++++++++++|.++++++++
T Consensus 375 ~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 375 PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999987754
No 66
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=4e-32 Score=273.89 Aligned_cols=311 Identities=19% Similarity=0.194 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC-CcE--EEeCChhHHHHHHHHHcCCCCCCCC--------CEEEEcCCCCccchHHHHH
Q 012718 108 KATDEYELARKKVAAFINASDS-GEI--VFTKNATEAINLVAYSWGLSNLKSG--------DEVILTVAEHHSAIVPWQL 176 (458)
Q Consensus 108 ~~~~~~~~~~~~la~~~g~~~~-~~v--~~t~g~t~a~~~~~~~l~~~~~~~g--------~~vl~~~~~~~s~~~~~~~ 176 (458)
...+..+++++.+++++|.+.. +++ ++|+|+|+|+..++.++ .++| |+|+++.++|++ +..
T Consensus 136 ~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~----~~~g~~~~g~~~d~Vi~~~~~~~~----~~~ 207 (514)
T 3mad_A 136 STAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTY----RDWARATKGITAPEAVVPVSAHAA----FDK 207 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHH----HHHHHHHHCCSSCEEEEETTSCTH----HHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHH----HHHhhhhcCCCCCeEEEeCccchH----HHH
Confidence 3456666788999999998831 266 99999999999999987 3344 899999999995 466
Q ss_pred HHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc----
Q 012718 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---- 252 (458)
Q Consensus 177 ~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---- 252 (458)
.++..|++++.+++++++.+|+++|++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..
T Consensus 208 ~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~ 287 (514)
T 3mad_A 208 AAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAE 287 (514)
T ss_dssp HHHHHTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHH
T ss_pred HHHHcCCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHH
Confidence 6677799999999998999999999999999999999999999999999999999999999999999999985433
Q ss_pred -------cCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccc-cCcceEeeecCCCCCCCCCCccCCCCCC
Q 012718 253 -------VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLG-GGEMISDVFLDHSTFADPPSRFEAGTPA 323 (458)
Q Consensus 253 -------~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 323 (458)
+++....++|++++|+||+ +++.|+|+++++++.+........ .|... .+ ......|+.+
T Consensus 288 ~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~gs~~ 356 (514)
T 3mad_A 288 RLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG--------LY---FSPTFAGSRP 356 (514)
T ss_dssp HTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC--------SE---EESSSCSSCC
T ss_pred hcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC--------cc---cCCccCCCCc
Confidence 3555667899999999995 778889999999876544332111 11000 00 0112256778
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhc
Q 012718 324 IGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQY 403 (458)
Q Consensus 324 ~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 403 (458)
....+++.++++.+...+++++.++..++++++.+.|++++++++..+. .++++|...+.+..++.+.|.++
T Consensus 357 ~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~- 428 (514)
T 3mad_A 357 GALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-------LWVIAVASDELNIYQVMEEMAGR- 428 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-------SSEEEEECSSSCHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-------eEEEEEeCCCCCHHHHHHHHHhc-
Confidence 8778888899998888888999999999999999999999899987655 45888888777888999999998
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
||.+ ++..+ ++.+|+++. ..++++|++++++.|+++++++++
T Consensus 429 Gi~v-~g~~~----------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 429 GWRL-NGLHR----------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp TCBC-EEETT----------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEe-ccCCC----------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9987 44322 568999988 444669999999999999987653
No 67
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.3e-32 Score=274.34 Aligned_cols=380 Identities=10% Similarity=0.033 Sum_probs=264.6
Q ss_pred CCCccchhhhhc-CCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHH
Q 012718 41 STDSVSLGHITR-PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK 119 (458)
Q Consensus 41 ~~~~~~~~~~~r-~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (458)
..+..++.+.++ ...+..... ....||++...++.++.+.+++..+... .+ ...+..+....+..+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~~~~~~~v~~~~~~~~~n--~~--~~~~~~~~~~~~le~~~~~~ 148 (497)
T 2qma_A 77 NAPLKSVIDDVAELVAKNAIFT----QHPDCIAHLHTPPLMPAVAAEAMIAALN--QS--MDSWDQASSATYVEQKVVNW 148 (497)
T ss_dssp CCCHHHHHHHHHHHTTTTSCCT----TSTTBCSSSCCCCBHHHHHHHHHHHHHC--CC--TTCGGGCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCC----CCCCeeEeCCCCCcHHHHHHHHHHHhhc--cc--ccchhhChHHHHHHHHHHHH
Confidence 333444444444 345554332 3347999999999999999988766542 22 22233334556667778999
Q ss_pred HHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC---------CC------CC-EEEEcCCCCccchHHHHHHHHHcCC
Q 012718 120 VAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL---------KS------GD-EVILTVAEHHSAIVPWQLVAQKTGA 183 (458)
Q Consensus 120 la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~---------~~------g~-~vl~~~~~~~s~~~~~~~~a~~~g~ 183 (458)
+++++|.++.+.++||+|+|+|+..++.+++...+ .+ |+ .|+++..+|++.. ..++..|.
T Consensus 149 la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~----~~~~~~g~ 224 (497)
T 2qma_A 149 LCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ----KSASWMGL 224 (497)
T ss_dssp HHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH----HHHHHTTS
T ss_pred HHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHH----HHHHHcCC
Confidence 99999997645899999999999999887410001 12 45 7999999999654 44455555
Q ss_pred ---eEEEEeCCCCCCCCHHHHHHhhcCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012718 184 ---NLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 184 ---~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~ 254 (458)
+++.+|.++++.+|+++|++.++++ +.+|++++++|+||.+.|+++|+++|+++|+++|+|++|+.+..+.
T Consensus 225 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~ 304 (497)
T 2qma_A 225 GEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILS 304 (497)
T ss_dssp CGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGS
T ss_pred CcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhC
Confidence 7999999888999999999998753 3488899999999999999999999999999999999999877654
Q ss_pred C----CCCC-CCcEEEecccC-CCCCCceeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHH
Q 012718 255 D----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEA 327 (458)
Q Consensus 255 ~----~~~~-~~d~~~~s~~K-~~gp~g~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 327 (458)
+ +..+ ++|++++|+|| +++|.|+|+++++++. ++.+.. ..............+ .....+ ++..+ ..
T Consensus 305 ~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~---~~~yl~~~~~~~~~~--~~~~~~-~~r~~-~a 377 (497)
T 2qma_A 305 SHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLH---HADYLNREHDELPNL--VDKSIA-TTKRF-DA 377 (497)
T ss_dssp TTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC-------------------------C-CSCCC-TH
T ss_pred cchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcC---CchhcCCccccCCCc--cccCCC-CCCch-hH
Confidence 4 2333 68999999999 5568889999998754 333321 100000000000000 000011 11111 23
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------hHHHHHHHhh
Q 012718 328 IGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------PTDIATLLDQ 401 (458)
Q Consensus 328 ~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~l~~ 401 (458)
+++.++++.+...+++++.++..++++++.+.|++++++++..++. .++++|++.+.. ..++.+.+.+
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~------~~~v~f~~~~~~~~~~~l~~~l~~~l~~ 451 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPS------LSTVLFRATHETADLDELNKALRLEALT 451 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCS------SSEEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCC------ceEEEEEEcCCccCHHHHHHHHHHHHHh
Confidence 4555667776666788899999999999999999999999875532 679999986432 2356677777
Q ss_pred hcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhh
Q 012718 402 QYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 402 ~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ |+.+.++. .++..+++|+++ +++++++||+++++.|+++++++
T Consensus 452 ~-G~~~~~~~--------~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 452 R-GIAVLGET--------IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp H-TSCBCEEE--------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C-CCEEEEee--------EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 7 88775432 122356899998 88899999999999999988764
No 68
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=1e-32 Score=268.38 Aligned_cols=332 Identities=15% Similarity=0.120 Sum_probs=247.6
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH----cCCC-CCC-cEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----INAS-DSG-EIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~g~~-~~~-~v~~t~g~ 138 (458)
+++++|+.+... ++++.+.+++.+.+... .. .+.. .....+++++++++ +|.+ ..+ +|++|+|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~----~y~~----~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~ 100 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQG-AN----QYAP----MTGVQALREAIAQKTERLYGYQPDADSDITVTAGA 100 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CC----SCCC----TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHhh-cc----CCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCCh
Confidence 457899988765 47789999998887641 00 0110 11123555666665 4754 335 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|+++++
T Consensus 101 ~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p 172 (386)
T 1u08_A 101 TEALYAAITAL----VRNGDEVICFDPSYDSY----APAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP 172 (386)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHHHHHHh----CCCCCEEEEeCCCchhH----HHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCC
Confidence 99999999998 67899999999999964 445667799999999876 4778999999999889999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCC----CCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQ----GLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~----~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
+||||.++| +++|+++|+++|+++|+|++|+.... ...+. ..+.|++++|+||.+|++| +|++++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 252 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 252 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence 999999997 68999999999999999999985221 11221 2368999999999998778 89999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+..... ....+.+.....++..+++.. ...+++++++++++++++.+.|+++
T Consensus 253 ~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~- 309 (386)
T 1u08_A 253 PISAEIRKVHQ---------------------YLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES- 309 (386)
T ss_dssp HHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHH---------------------hhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 87766543221 011244555555666666543 2236788899999999999999987
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
++++..+. .+.++++.+++ .+..++.+.|.+++||.+++|..|.... ..++++|++++ ++++||+
T Consensus 310 g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~----~~~~~iRis~~--~~~~~i~ 377 (386)
T 1u08_A 310 RLEILPCE------GTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADP----FPHKLIRLCFA--KKESTLL 377 (386)
T ss_dssp SCEECCCC------BSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSC----CCSCEEEEECC--SCHHHHH
T ss_pred CCeecCCC------ceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCC----CCCCEEEEEEc--CCHHHHH
Confidence 88876543 15588999875 4677888888643499999886432110 12679999998 5899999
Q ss_pred HHHHHHHH
Q 012718 442 EFIHALNE 449 (458)
Q Consensus 442 ~l~~~l~~ 449 (458)
+++++|.+
T Consensus 378 ~~~~~l~~ 385 (386)
T 1u08_A 378 AAAERLRQ 385 (386)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99998864
No 69
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-33 Score=270.63 Aligned_cols=332 Identities=16% Similarity=0.108 Sum_probs=249.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~-~v~~t~g 137 (458)
+++++.|+.+... +.++.+.+++.+.+.... . . ++.......++++++++++ |.+ ..+ +|++|+|
T Consensus 24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~--~----~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 24 GVGLIDLSIGSTDLPPPEAPLKALAEALNDPT--T--Y----GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHTTCGG--G--S----SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred CCCEEeccCCCCCCCCCHHHHHHHHHHHhCCC--c--C----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 4677889888665 367888888887764310 1 0 1112345667888888887 876 223 8999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++++.+++.++ .++||+|+++.++|++. ...++..|++++.++.+.++.+|++.+++.+++++++|+++++
T Consensus 96 ~~~a~~~~~~~l----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p 167 (376)
T 2dou_A 96 SQEGLAHLLLAL----TEPEDLLLLPEVAYPSY----FGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYP 167 (376)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEESSCCHHH----HHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSS
T ss_pred cHHHHHHHHHHh----cCCCCEEEECCCCcHhH----HHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCC
Confidence 999999999988 67899999999999954 5556677999999998434457999999988778899999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---c---CCC-CCCCCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V---VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~---~~~-~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
+||||.++| +++|+++|+++|+++|+|++|+.+.. + +++ ...+.+++++|+||.+|++| +|+++.+++
T Consensus 168 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 247 (376)
T 2dou_A 168 NNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEE 247 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHH
Confidence 999999998 67899999999999999999985432 1 222 22346799999999888666 899999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+++.+......+ ..+.+.....++..+++... ..+++.+++++++++++.+.|+++
T Consensus 248 ~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-- 303 (376)
T 2dou_A 248 ALARLERVKGVI---------------------DFNQYAGVLRMGVEALKTPK-EVVRGYARVYRERALGMAEALKGV-- 303 (376)
T ss_dssp HHHHHHHHHHHH---------------------CCCSCHHHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHhc---------------------ccCCCHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 776665332211 12445555566656665422 236778888999999999999886
Q ss_pred EEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
+++..+. .+.++++.++ +.+..++.+.|.++ ||.+++|..|... .++++|++++. +++++++++
T Consensus 304 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~------~~~~~Ris~~~--~~~~i~~~l 368 (376)
T 2dou_A 304 LSLLPPR------ATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPG------GKGFVRIALVR--PLEELLEAA 368 (376)
T ss_dssp SEECCCC------BSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGG------GTTEEEEECCS--CHHHHHHHH
T ss_pred cCccCCC------eeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCC------CCCeEEEEecC--CHHHHHHHH
Confidence 6665432 1457888887 45678899999999 9999998765321 26799999984 889999999
Q ss_pred HHHHHHH
Q 012718 445 HALNETV 451 (458)
Q Consensus 445 ~~l~~~~ 451 (458)
++|.+++
T Consensus 369 ~~l~~~l 375 (376)
T 2dou_A 369 KRIREAL 375 (376)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9998765
No 70
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=7.1e-32 Score=260.78 Aligned_cols=319 Identities=12% Similarity=0.107 Sum_probs=246.4
Q ss_pred EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH------cCCCCCCcEEEeCChhHH
Q 012718 69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF------INASDSGEIVFTKNATEA 141 (458)
Q Consensus 69 i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~g~~~~~~v~~t~g~t~a 141 (458)
++|+.+... +.++.+.+++.+.+............ ... .++++.++++ ++++++ +|++|+|++++
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~~-~~l~~~la~~l~~~~g~~~~~~-~v~~~~G~~~a 104 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RDA-VELRDELAAYITKQTGVAVTRD-NLWAANGSNEI 104 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TTC-HHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------ccH-HHHHHHHHHhhhhcccCCCChH-hEEECCChHHH
Confidence 788887665 57889999999988763211111111 111 3677777777 455554 89999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCc
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNM 220 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~ 220 (458)
+..++.++ +++||+|++++++|++. ...++..|++++.++.++++.+|++++++.+++ ++++|++++++||
T Consensus 105 l~~~~~~l----~~~gd~Vl~~~~~y~~~----~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 176 (369)
T 3cq5_A 105 LQQLLQAF----GGPGRTALGFQPSYSMH----PILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNP 176 (369)
T ss_dssp HHHHHHHH----CSTTCEEEEEESSCTHH----HHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HHHHHHHh----cCCCCEEEEcCCChHHH----HHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 99999988 67899999999999954 555677899999999887778899999999987 8899999999999
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCccc---CCC-CCCC-CcEEEecccCCCCCCc--eeEEEEeccccccCCCc
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---VDV-QGLD-ADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---~~~-~~~~-~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~ 293 (458)
||.++|++++.++|+.+++++|+|++|+.+... ..+ +..+ .+++++|+||.+|++| +|++++++++++.+...
T Consensus 177 tG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 256 (369)
T 3cq5_A 177 TGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLV 256 (369)
T ss_dssp TCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHc
Confidence 999999999999999999999999999865532 222 3345 6799999999988667 79999998876655432
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
.. ..+++.....++..+++... .+++.+++++++++++.+.|++. ++++..+.
T Consensus 257 ~~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~- 309 (369)
T 3cq5_A 257 RL-----------------------PYHLSALSQAAAIVALRHSA--DTLGTVEKLSVERVRVAARLEEL-GYAVVPSE- 309 (369)
T ss_dssp SC-----------------------TTCSCHHHHHHHHHHHHTHH--HHHTHHHHHHHHHHHHHHHHHHH-TCEEECCS-
T ss_pred CC-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHhC-CCEECCCC-
Confidence 11 12356666666666666422 26778888999999999999875 78876322
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++++.++ .+..++.+.|.++ ||.+++|. .++++|++++ +++|++++++.|+++++
T Consensus 310 ------~~~~~~~~~-~~~~~l~~~l~~~-gi~v~~~~-----------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 310 ------SNFVFFGDF-SDQHAAWQAFLDR-GVLIRDVG-----------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp ------SSEEEEECC-SSHHHHHHHHHHT-TEECBCCS-----------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred ------CeEEEEECC-CCHHHHHHHHHHC-CEEEEECC-----------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 678888886 4677899999877 99998761 2578999998 78999999999998875
No 71
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.9e-33 Score=273.67 Aligned_cols=339 Identities=14% Similarity=0.158 Sum_probs=249.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t~g 137 (458)
++++++|+.+... ..++.+.+++.+.+.... . + ++.......++++.+++++ |.+ ++++|++|+|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~--~----~--~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g 107 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQRED--T----H--GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG 107 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC-----------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhCCC--C----C--CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC
Confidence 4667899888765 467888888887764321 0 0 0111122456778888877 753 3138999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-C-CCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-E-SPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~-~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+++ + .+|++.+++.+++++++|+++
T Consensus 108 ~~~a~~~~~~~~----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~ 179 (412)
T 2x5d_A 108 SKEGLAHLMLAT----LDHGDTILVPNPSYPIH----IYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG 179 (412)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred hHHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence 999999999988 68999999999999954 4555667999999998865 3 368899999998889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCC----CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQG----LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.+.. +.++.. .+.|++++|+||.+|++| +|++++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 259 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG 259 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc
Confidence 99999999998 67899999999999999999986432 122222 357899999999988666 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... ....+.+.....++..+++...+ .++++.++++++++++.+.|++
T Consensus 260 ~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 317 (412)
T 2x5d_A 260 NPELVSALARIKS---------------------YHDYGTFTPLQVAAIAALEGDQQ-CVRDIARQYQQRRDVLVKGLRE 317 (412)
T ss_dssp CHHHHHHHHHHHH---------------------HHCCCCCHHHHHHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---------------------hhccCCCHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9887766553221 11235566566666555553221 2678888999999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC-CC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE-NI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
+ ++++..+. .+.++++.++ +. +..++.+.|.+++||.+++|..|... .++++||+++. +++
T Consensus 318 ~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~------~~~~iRis~~~--~~~ 382 (412)
T 2x5d_A 318 A-GWMVENPK------ASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDY------GDDHVRFALIE--NRD 382 (412)
T ss_dssp H-TCCCCCCS------BSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGG------GTTEEEEECCS--CHH
T ss_pred C-CCEecCCC------eeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCC------CCCeEEEEecC--CHH
Confidence 7 66654332 1447888886 34 57789988865339999998766322 16799999995 899
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 012718 439 DVDEFIHALNETVSFFNV 456 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~~ 456 (458)
+++++++.|.+++++...
T Consensus 383 ~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 383 RLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999987654
No 72
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=7e-33 Score=272.60 Aligned_cols=336 Identities=14% Similarity=0.125 Sum_probs=255.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a~ 142 (458)
++++.|..+... +.++.+.+++.+.+..... .++....+..+.+.+.+++.+| .+++ +|++|+|+++|+
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~-------~y~~~~~~l~~~l~~~l~~~~g~~~~~~-~v~~~~g~~ea~ 132 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHIF-------GYNYFNDDLYQAVIDWERKEHDYAVVKE-DILFIDGVVPAI 132 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCCS-------SCBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHH
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCCc-------CCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEcCCHHHHH
Confidence 567777666544 6789999999998865211 1111125666778888888888 4443 899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CC--CCCCHHHHHHhhc-CCceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLS-RKTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~--~~~d~~~l~~~l~-~~~~~v~~~~~~ 218 (458)
+.++.++ .++||+|++..++|++ +...++..|.+++.+|++ .+ +.+|+++|+++++ +++++|++++++
T Consensus 133 ~~a~~~~----~~~gd~Vi~~~~~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~ 204 (421)
T 3l8a_A 133 SIALQAF----SEKGDAVLINSPVYYP----FARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPH 204 (421)
T ss_dssp HHHHHHH----SCTEEEEEEEESCCHH----HHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSB
T ss_pred HHHHHHh----cCCCCEEEECCCCcHH----HHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCC
Confidence 9999998 6889999999999995 455566779999999986 33 3579999999998 789999999999
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCC-----CCCcEEEecccCCCCCCc--eeEEEEe-
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQG-----LDADFLVASSHKMCGPTG--IGFLFGK- 283 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~-----~~~d~~~~s~~K~~gp~g--~G~l~~~- 283 (458)
||+|.+++ +++|+++|+++|+++|+|++|+... ....+.. .+.++++.|++|.+|+.| +|+++++
T Consensus 205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~ 284 (421)
T 3l8a_A 205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQN 284 (421)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCS
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCC
Confidence 99999965 8899999999999999999998422 1111111 245688999999888666 7999998
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++.+.+..... .+..++++...+.++.++++...++ ++++.++++++++++.+.|+++
T Consensus 285 ~~l~~~~~~~~~--------------------~~~~~~~n~~~~~a~~aal~~~~~~-~~~~~~~~~~~~~~l~~~L~~~ 343 (421)
T 3l8a_A 285 ESLRRKFQYRQL--------------------ANNQHEVPTVGMIATQAAFQYGKPW-LEELKTVIEGNIKLVIKELEAK 343 (421)
T ss_dssp HHHHHHHHHHHH--------------------HTTCSCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------hcccCCCCHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 666655543221 1123467877778877777753332 6788899999999999999887
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
+++++..+.. +.++|+.++. .+..++.+.|.+++||.+.+|..|... .++++||+++ +++++|+
T Consensus 344 ~~i~~~~~~~------~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~------~~~~iRi~~~--~~~~~i~ 409 (421)
T 3l8a_A 344 TKIKVMEPEG------TYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKE------GKYFARLNVA--TPKNTVQ 409 (421)
T ss_dssp CSCEEECCSB------SSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGG------GTTEEEEECC--SCHHHHH
T ss_pred CCceEeCCCe------eEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCC------CCCEEEEEec--CCHHHHH
Confidence 8888876541 3456688763 577889999875459999998765432 1689999999 6999999
Q ss_pred HHHHHHHHHHH
Q 012718 442 EFIHALNETVS 452 (458)
Q Consensus 442 ~l~~~l~~~~~ 452 (458)
+++++|.++++
T Consensus 410 ~~l~~l~~~l~ 420 (421)
T 3l8a_A 410 EALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 73
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=8.4e-33 Score=266.80 Aligned_cols=325 Identities=14% Similarity=0.167 Sum_probs=245.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+... .+++.+.+++.+.+.....++. ...+++++++++++|++++ +|++|+|+++++.+
T Consensus 24 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~-~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 24 DQLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPAS-WILAGNGETESIFT 91 (364)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHH
T ss_pred cceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHH-HEEECCCHHHHHHH
Confidence 457888887654 4678888888887644222111 1245899999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCC-HHHHHHhhcCCceEEEEecccCcCcc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPD-LDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d-~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
++.++ +||+|+++.++|++ +...++..|++++.++.+++..++ ++.+.+.+.+++++|++++++||||.
T Consensus 92 ~~~~~------~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~ 161 (364)
T 1lc5_A 92 VASGL------KPRRAMIVTPGFAE----YGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGL 161 (364)
T ss_dssp HHHHH------CCSEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCC
T ss_pred HHHHc------CCCeEEEeCCCcHH----HHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCC
Confidence 99876 46999999999995 455667789999999987522233 46566667678899999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC-CCCCCCcEEEecccCCCCCCc--eeEEE-EeccccccCCC
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD-VQGLDADFLVASSHKMCGPTG--IGFLF-GKSDLLSAMPP 292 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~-~~~~~~~~l~~ 292 (458)
++| +++|+++|+++|+++|+|++|+.+.. .++ +...+.++++.|+||++|++| +|+++ .++++++.+..
T Consensus 162 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~ 241 (364)
T 1lc5_A 162 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRR 241 (364)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHH
Confidence 999 88999999999999999999985432 122 244568899999999988666 79999 88887665543
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
... ..+.+.....++..+++.. ..+++.+++++++++++.+.|++++++++..+.
T Consensus 242 ~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 296 (364)
T 1lc5_A 242 QQM-----------------------PWSVNALAALAGEVALQDS--AWQQATWHWLREEGARFYQALCQLPLLTVYPGR 296 (364)
T ss_dssp HSC-----------------------TTCSCHHHHHHHHHGGGCH--HHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS
T ss_pred hCC-----------------------CCCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC
Confidence 211 1245666666666666542 236788888999999999999988899875322
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++++.+++ +..++.+.|.++ ||.+++|..|... .++++||+++ +.+|++++++.|+++++
T Consensus 297 -------g~~~~~~~~~-~~~~l~~~l~~~-gi~v~~g~~~~~~------~~~~iRis~~---~~~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 297 -------ANYLLLRCER-EDIDLQRRLLTQ-RILIRSCANYPGL------DSRYYRVAIR---SAAQNERLLAALRNVLT 358 (364)
T ss_dssp -------SSEEEEEESC-TTCCHHHHHHTT-TEECEECTTSTTC------CTTEEEEECC---CHHHHHHHHHHHHHHC-
T ss_pred -------CeEEEEECCC-cHHHHHHHHHHC-CcEEeeCcccCCC------CCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 6788888874 345788899988 9999998755321 2579999976 68999999999999987
Q ss_pred hhh
Q 012718 453 FFN 455 (458)
Q Consensus 453 ~~~ 455 (458)
+++
T Consensus 359 ~~~ 361 (364)
T 1lc5_A 359 GIA 361 (364)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 74
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=7.6e-33 Score=273.96 Aligned_cols=341 Identities=15% Similarity=0.186 Sum_probs=252.3
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~t~g~ 138 (458)
++++.|..+.+. .+++.+.+++.+.+...... ..++.......++++++++++ |.+..++|++|+|+
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~ 149 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADK------ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGS 149 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH------HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHH------HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcH
Confidence 567888777554 26778888888887652100 001111223447778888887 88322499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----C--CceEE
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----R--KTKLV 212 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~--~~~~v 212 (458)
++|+.+++.++ +++||+|+++.|+|++. ...++..|++++.++.++++ +|+++|++.++ + ++++|
T Consensus 150 ~~al~~~~~~l----~~~Gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v 220 (448)
T 3aow_A 150 QQALDLIGRVF----LNPGDIVVVEAPTYLAA----LQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVV 220 (448)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHH----cCCCCEEEEeCCChHHH----HHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEE
Confidence 99999999998 68999999999999954 55566779999999987765 79999999997 5 78887
Q ss_pred -EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cC---CCCCCCCcEEEecccCCCCCCc--eeE
Q 012718 213 -VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV---DVQGLDADFLVASSHKMCGPTG--IGF 279 (458)
Q Consensus 213 -~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~---~~~~~~~d~~~~s~~K~~gp~g--~G~ 279 (458)
++++++||||.++| +++|.++|+++|++||+|++|+.... .. .++..+.++++.|++|.+| +| +||
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~ 299 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGW 299 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEE
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEE
Confidence 57899999999998 56899999999999999999986432 11 2333357899999999888 67 899
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~~~~~~~~l~~~l~~ 358 (458)
+++++++++.+......+ ..+++.....++..+++.. ....+++++++++++++++.+
T Consensus 300 v~~~~~l~~~l~~~~~~~---------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (448)
T 3aow_A 300 MVGDPGIIRKMEIAKQST---------------------DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLE 358 (448)
T ss_dssp EEECHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHh---------------------cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877665332211 1133555555555555431 011267778888899999999
Q ss_pred HHhc-CC-CEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 359 NLLS-IP-NIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 359 ~L~~-~~-~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.|++ +| ++++..+. .+.+++++++ +.+..++.+.|.++ ||.+.+|..|... -..++++|++++. .
T Consensus 359 ~L~~~~~~g~~~~~p~------~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~----~~~~~~iRls~~~-~ 426 (448)
T 3aow_A 359 ALEEFMPEGVKWTKPE------GGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAH----RDVKNTMRLNFTY-V 426 (448)
T ss_dssp HHHHHCCTTCEECCCS------BSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTT----CCCCSEEEEECSS-S
T ss_pred HHHHhCCCCeEEeCCC------ccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCC----CCCCCEEEEEeCC-C
Confidence 9986 56 68876543 1568899987 45778899999999 9999998754321 0126799999986 4
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 012718 436 TKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~ 455 (458)
++++|++++++|.+++++..
T Consensus 427 ~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 427 DEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp CTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998654
No 75
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=7.3e-34 Score=277.52 Aligned_cols=340 Identities=16% Similarity=0.221 Sum_probs=251.8
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+++++|+.+... .+++.+.+++.+.+........ ++.......++++.+++++|++++ +|++|+|+++++
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~------~y~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~~~al 104 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVAL------QYSPTEGYAPLRAFVAEWIGVRPE-EVLITTGSQQAL 104 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHT------SCCCTTCCHHHHHHHHHHHTSCGG-GEEEESHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhh------CCCCCCCCHHHHHHHHHHhCCChh-hEEEeccHHHHH
Confidence 567899877544 2678888998888765211000 001112345899999999997655 999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEE-EEecccCc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLV-VIHHISNM 220 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v-~~~~~~n~ 220 (458)
.+++.++ +++||+|+++.++|++. ...++..|++++.++.++++ +|++++++.+++ ++++| ++++++||
T Consensus 105 ~~~~~~~----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~np 175 (397)
T 2zyj_A 105 DLVGKVF----LDEGSPVLLEAPSYMGA----IQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNP 175 (397)
T ss_dssp HHHHHHH----CCTTCEEEEEESCCHHH----HHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTT
T ss_pred HHHHHHh----CCCCCEEEEeCCCcHHH----HHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCC
Confidence 9999988 67899999999999954 55566779999999987665 799999999986 78887 57999999
Q ss_pred CcccccH---HHHHHHHHhcCcEEEEeccccCCcc----cCCCCCC------CCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 221 LASILPI---EEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGL------DADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 221 tG~~~~l---~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~------~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
||.++|. ++|+++|+++|+++|+|++|+.... +.++..+ +.+++++|+||++| +| +|+++++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~ 254 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPE 254 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHH
Confidence 9999985 4899999999999999999986432 2222222 23488999999888 55 899999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IP 364 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~ 364 (458)
+++.+......+ ..++ +.....++..+++......++++.++++++++++.+.|++ ++
T Consensus 255 ~~~~l~~~~~~~--------------------~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 313 (397)
T 2zyj_A 255 ALQKLVQAKQGA--------------------DLHT-PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVP 313 (397)
T ss_dssp HHHHHHHHHHHH--------------------HSSC-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhh--------------------cCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 776665332211 1223 4444555555554321012677788888999999999976 56
Q ss_pred -CEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 365 -NIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 365 -~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+. .+.++++.++ +.+..++.+.|.++ ||.+.+|..|.... ..++++||+++.. +++|+++
T Consensus 314 ~g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~----~~~~~iRis~~~~-~~~~i~~ 381 (397)
T 2zyj_A 314 KEVRYTRPK------GGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANG----GGENTLRLSYATL-DREGIAE 381 (397)
T ss_dssp TTSEECCCS------BSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTS----CCTTEEEEECSSS-CHHHHHH
T ss_pred CCeEEccCC------ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCC----CCCCeEEEEcCCC-CHHHHHH
Confidence 58776543 1568899987 45678899999998 99999887543210 1267999999974 8999999
Q ss_pred HHHHHHHHHHhhh
Q 012718 443 FIHALNETVSFFN 455 (458)
Q Consensus 443 l~~~l~~~~~~~~ 455 (458)
++++|.++++++.
T Consensus 382 ~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 382 GVRRLGRALKGLL 394 (397)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 76
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=1.2e-32 Score=268.88 Aligned_cols=339 Identities=14% Similarity=0.120 Sum_probs=242.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccC-CCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSN-VHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a 141 (458)
++++.|..+... ++++.+.+++.+.+...... ... +....+..+..+.+.+.+.+.+| +++ ++|++|+|+++|
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~i~~~~g~~~a 111 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHG--YTSAQGDVETRAAIAEFLNNTHGTHFNA-DNLYMTMGAAAS 111 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHS--CCCTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCC--cCCCCCcHHHHHHHHHHHHHHhCCCCCh-HHEEEccCHHHH
Confidence 567889888665 57889999999988762100 000 00001112333333344444445 344 499999999999
Q ss_pred HHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 142 INLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
+..++.++ +++| |+|+++.++|++ +...++..|++++.+++++ ++.+|++++++.+++++++|++++++|
T Consensus 112 l~~~~~~l----~~~g~d~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~n 183 (398)
T 3ele_A 112 LSICFRAL----TSDAYDEFITIAPYFPE----YKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNN 183 (398)
T ss_dssp HHHHHHHH----CCSTTCEEEEESSCCTH----HHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCT
T ss_pred HHHHHHHH----cCCCCCEEEEeCCCchh----hHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCC
Confidence 99999998 6899 999999999994 4566677899999999985 467899999999999999999999999
Q ss_pred cCccccc---HHHHHHHHHh------cCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 220 MLASILP---IEEIVHWSHD------VGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 220 ~tG~~~~---l~~i~~l~~~------~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
|||.++| +++|+++|++ +|+++|+|++|+... .+......+.++++.|+||.+|++| +|+++++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 263 (398)
T 3ele_A 184 PSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVP 263 (398)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEc
Confidence 9999999 6677799998 999999999998522 2222234457899999999888666 9999999
Q ss_pred ccccccC--CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 284 SDLLSAM--PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 284 ~~~~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+++++.. ........ ......+++.....++...+ ... ...++++++++++.+.|+
T Consensus 264 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~a~~~~l---~~~---~~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 264 DEVYDKAELYAAVCGAG----------------RALGYVCAPSLFQKMIVKCQ---GAT---GDINAYKENRDLLYEGLT 321 (398)
T ss_dssp TTSTTHHHHHHHHHHHH----------------HHTTCCCSCHHHHHHHTTCT---TCC---CCHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHh----------------hhccccCCCHHHHHHHHHHh---cCH---HHHHHHHHHHHHHHHHHH
Confidence 8865421 10000000 00011233433333333222 221 135677788888888888
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
++ ++++..+. .+.++++.+++.+..++.+.|.++ ||.+++|..| +.++++|++++ +++++++
T Consensus 322 ~~-g~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRis~~--~~~e~i~ 383 (398)
T 3ele_A 322 RI-GYHCFKPD------GAFYMFVKALEDDSNAFCEKAKEE-DVLIVAADGF--------GCPGWVRISYC--VDREMIK 383 (398)
T ss_dssp HH-TCCEECCS------BSSEEEEECSSSCHHHHHHHHHTT-TEECEESGGG--------TCTTEEEEECC--SCHHHHH
T ss_pred Hc-CCeecCCC------eeEEEEEEcCCCCHHHHHHHHHHC-CEEEeCcccc--------CCCCeEEEEec--CCHHHHH
Confidence 76 77766554 144689998876788999999888 9999998754 33679999997 7999999
Q ss_pred HHHHHHHHHHHhhh
Q 012718 442 EFIHALNETVSFFN 455 (458)
Q Consensus 442 ~l~~~l~~~~~~~~ 455 (458)
+++++|.+++++++
T Consensus 384 ~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 384 HSMPAFEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 77
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=7.7e-33 Score=269.04 Aligned_cols=332 Identities=15% Similarity=0.144 Sum_probs=248.0
Q ss_pred CeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 67 KLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 67 ~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.++.|..+.. + ++++.+.+++.+.+....... .............+++++.+++++|.+ +.+++++||+++..
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~ 114 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGS--GGSGHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQA 114 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCC--CSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCC--CCcCcccCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHH
Confidence 3455555442 4 478899999999887642211 111111123466778999999999985 56666777999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC---ceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~n~t 221 (458)
++.++ .++||.|+++.+.|.+. ...++..|++++.+|. .|++++++.+++. +++|++++++|||
T Consensus 115 ~~~~~----~~~gd~v~~~~~~~~~~----~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~npt 181 (384)
T 1bs0_A 115 VIAAM----MAKEDRIAADRLSHASL----LEAASLSPSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMD 181 (384)
T ss_dssp HHHHH----CCTTCEEEEETTCCHHH----HHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred HHHHh----CCCCcEEEEcccccHHH----HHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 99987 68999999999999954 4445567999999985 3889999988763 7899999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCccc------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMV------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~ 295 (458)
|.+.|+++|.++|+++|+++|+|++|+.+... .+....++|++++|+||++|+.| |++++++++++.+.....
T Consensus 182 G~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~ 260 (384)
T 1bs0_A 182 GDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFAR 260 (384)
T ss_dssp CCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCH
T ss_pred CCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhch
Confidence 99999999999999999999999999866431 11112358999999999999887 999999887665543211
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
.+. ...+++.....++.++++.+.+...+++.++++++++++.+.|+++ ++++....
T Consensus 261 ~~~-------------------~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--- 317 (384)
T 1bs0_A 261 HLI-------------------YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLADSC--- 317 (384)
T ss_dssp HHH-------------------SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCC---
T ss_pred hhh-------------------cCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccCCC---
Confidence 110 0125677777777788887763225788899999999999999988 77775321
Q ss_pred cCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 376 ~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
++++++.++. .+..++.+.|.++ ||.++++..+..+ ...+++|++++.+++++|+++++++|+++
T Consensus 318 ----~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~-----~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 318 ----SAIQPLIVGDNSRALQLAEKLRQQ-GCWVTAIRPPTVP-----AGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp ----SSBCCEEEESHHHHHHHHHHHHHT-TEECCEECTTSSC-----TTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ----CCEEEEEeCCHHHHHHHHHHHHHC-CcEEEeecCCCCC-----CCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 5677777753 3467899999988 9999987643211 11478999999888999999999999864
No 78
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=273.12 Aligned_cols=342 Identities=18% Similarity=0.181 Sum_probs=265.3
Q ss_pred CcHHHHHHHHHHHHHhcc-CCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhHHHHHHHHHcCCCC-CC
Q 012718 79 KPIAVLKALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSWGLSN-LK 155 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~a~~~~~~~l~~~~-~~ 155 (458)
.++.+.+++.+.+..... ++. .+.......+..+++++.+++++|.+ ..+++++++|+|+|+.+++.++.... .+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 346777777777765321 221 12222345677778999999999998 33489999999999999998872100 00
Q ss_pred CC---CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHH
Q 012718 156 SG---DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 156 ~g---~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+| ++|+++.+.|.+ +...++..|++++.+++++ ++.+|+++|++++++++++|++++++||||.+.|+++|.
T Consensus 154 ~g~~~~~Vi~~~~~h~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAG----FDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp SCCSSCEEEEETTSCHH----HHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred CCCCCceEEEeCCccHH----HHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence 23 799999999995 4666777899999999987 788999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCc-----------c-cCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccc-cC
Q 012718 232 HWSHDVGAKVLVDACQSVPH-----------M-VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLG-GG 297 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~-----------~-~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~-g~ 297 (458)
++|+++|+++|+|++|+.+. . +++....++|++++|+||+ ++|.|+|+++++++.+........ .+
T Consensus 230 ~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 309 (497)
T 3mc6_A 230 KIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAW 309 (497)
T ss_dssp THHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTC
T ss_pred HHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccc
Confidence 99999999999999998332 2 3556667899999999995 688899999998876544432111 00
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCc
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEH 376 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~ 376 (458)
.. ..+ ......|+.+....+++.++++.+...+++++.++..++++++.+.|.+ ++++++..++.
T Consensus 310 ~~--------~~~---~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~--- 375 (497)
T 3mc6_A 310 TG--------GLY---GSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR--- 375 (497)
T ss_dssp TT--------SCB---CCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC---
T ss_pred cC--------CCc---CCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC---
Confidence 00 000 0111245666677888889999988888899999999999999999999 69999876532
Q ss_pred CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 377 ~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+++++|..++.+..++.+.|.++ ||.++.+.. +..+|+++. .++.+|++++++.|+++++++++
T Consensus 376 ---~~~v~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~-----------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 376 ---YSVISFSSKTLNIHELSDRLSKK-GWHFNALQK-----------PVALHMAFT-RLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp ---SSEEEEECTTTTHHHHHHHHHTT-TCBCEECCS-----------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred ---eeEEEEeCCCCCHHHHHHHHHhC-CEEEecCCC-----------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 67888988877889999999998 998875432 346899998 58999999999999999987654
No 79
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=8.6e-33 Score=270.42 Aligned_cols=334 Identities=15% Similarity=0.136 Sum_probs=250.6
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHh--ccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEe
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFT 135 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t 135 (458)
++++++|+.+... ..++.+.+++.+.+... ..++. .....++++++++++ |.+ +.++|++|
T Consensus 46 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t 115 (404)
T 2o1b_A 46 PLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGA----------FHGKEAFKQAIVDFYQRQYNVTLDKEDEVCIL 115 (404)
T ss_dssp SSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCC----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred CCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCcccEEEc
Confidence 3567889888665 45788888888876421 11111 122346777777777 875 21489999
Q ss_pred CChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEE
Q 012718 136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVI 214 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~ 214 (458)
+|+++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+++ ..+|++++++.+++++++|++
T Consensus 116 ~G~~~al~~~~~~l----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l 187 (404)
T 2o1b_A 116 YGTKNGLVAVPTCV----INPGDYVLLPDPGYTDY----LAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYL 187 (404)
T ss_dssp SSHHHHHHHHHHHH----CCTTCEEEEEESCCSSH----HHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEE
T ss_pred CCcHHHHHHHHHHh----cCCCCEEEEcCCCchhH----HHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEE
Confidence 99999999999998 67899999999999965 4455667999999998764 457999999988778899999
Q ss_pred ecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCCC----CCcEEEecccCCCCCCc--eeEEEE
Q 012718 215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGL----DADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 215 ~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++++||||.++| +++|+++|+++|+++|+|++|+.... +.++... +.+++++|+||++|++| +|++++
T Consensus 188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (404)
T 2o1b_A 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG 267 (404)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence 999999999997 67899999999999999999986432 2222222 46799999999998667 799999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... ..++.+.....++..+++.. ...+++++++++++++++.+.|++
T Consensus 268 ~~~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 325 (404)
T 2o1b_A 268 NKDMIQALKKYQTH---------------------TNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAK 325 (404)
T ss_dssp CHHHHHHHHHHHHH---------------------HCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh---------------------ccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98877666533221 12355666666666666542 223678888899999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
+ ++++..+. .+.++++.++ +.+..++.+.|. ++ ||.+++|..|... .++++||+++. +++++
T Consensus 326 ~-g~~~~~~~------~g~~~~~~~~~~~~~~~l~~~l~~~~-gi~v~~g~~f~~~------~~~~iRis~~~--~~e~l 389 (404)
T 2o1b_A 326 A-DLPFVHAK------GGIYVWLETPPGYDSEQFEQFLVQEK-SILVAPGKPFGEN------GNRYVRISLAL--DDQKL 389 (404)
T ss_dssp T-TCCEECCC------BSSEEEEECCTTCCHHHHHHHHHHHH-CEECEESGGGCGG------GTTEEEEECCS--CTTHH
T ss_pred c-CCeecCCC------cceEEEEeCCCCCCHHHHHHHHHHHC-CEEEeCchhhCcC------CCCeEEEEEcC--CHHHH
Confidence 7 77776543 1346888887 456778888877 46 9999998765421 26799999995 78899
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|.+++++.
T Consensus 390 ~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 390 DEAAIRLTELAYLY 403 (404)
T ss_dssp HHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999888653
No 80
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=5.1e-33 Score=271.89 Aligned_cols=356 Identities=19% Similarity=0.248 Sum_probs=255.3
Q ss_pred hhhcCCCCcccccc-c-CCCCe-EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc
Q 012718 49 HITRPDFPILHQEV-Y-GSKKL-VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124 (458)
Q Consensus 49 ~~~r~~f~~~~~~~-~-~~~~~-i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 124 (458)
+.+|+.||.+.... + +++++ .|+++...+ +.++.+.+++.+++.....+++. +...+...+..+++++.+++++
T Consensus 27 ~~~~~~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~ 104 (401)
T 2bwn_A 27 EREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLH 104 (401)
T ss_dssp EECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHT
T ss_pred hcccccccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHh
Confidence 34688999875321 1 12333 455444433 24567999999998875544331 1222233466778999999999
Q ss_pred CCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHh
Q 012718 125 NASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 125 g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~ 204 (458)
|.+ ++|++++|++ ++..++..+. .+.+||.|+++.++|++.... ++..|++++.++.+ |++++++.
T Consensus 105 ~~~--~~i~~~sG~~-a~~~~~~~l~--~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~-----d~~~le~~ 170 (401)
T 2bwn_A 105 QKE--AALVFSSAYN-ANDATLSTLR--VLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRHN-----DVAHLREL 170 (401)
T ss_dssp TCS--EEEEESCHHH-HHHHHHHHHH--HHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECTT-----CHHHHHHH
T ss_pred CCC--cEEEECCcHH-HHHHHHHHHh--cCCCCCEEEECchhhHHHHHH----HHHcCCeEEEEcCC-----CHHHHHHH
Confidence 974 3777766655 7777766541 135899999999999976544 35579999999875 78888888
Q ss_pred hc----CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC------CCCC--CCcEEEecccCCC
Q 012718 205 LS----RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD------VQGL--DADFLVASSHKMC 272 (458)
Q Consensus 205 l~----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~------~~~~--~~d~~~~s~~K~~ 272 (458)
++ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..... .... +.|++++|++|.+
T Consensus 171 l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~ 250 (401)
T 2bwn_A 171 IAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY 250 (401)
T ss_dssp HHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred HHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhc
Confidence 86 5789999999999999999999999999999999999999996543110 0111 3589999999999
Q ss_pred CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 273 GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 273 gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
|..| |+++.++++++.+.....+ ..+..++++ ..++++.++++++.+.+++++.++++++
T Consensus 251 ~~~G-G~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~ 310 (401)
T 2bwn_A 251 GVFG-GYIAASARMVDAVRSYAPG------------------FIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMH 310 (401)
T ss_dssp CSCC-EEEEECHHHHHHHHHHCHH------------------HHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cCCC-CEEecCHHHHHHHHHhCcC------------------ceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8766 8998887665543321110 123334544 6677778888888776678999999999
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
++++.+.|+++ ++++..+. ++++++.++. .+..++.+.|. ++ ||.++++..+..+ ...+++|++
T Consensus 311 ~~~l~~~L~~~-g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~~-gi~v~~~~~~~~~-----~~~~~iRis 376 (401)
T 2bwn_A 311 AKVLKMRLKAL-GMPIIDHG-------SHIVPVVIGDPVHTKAVSDMLLSDY-GVYVQPINFPTVP-----RGTERLRFT 376 (401)
T ss_dssp HHHHHHHHHHH-TCCBCCCS-------SSCEEEECCCHHHHHHHHHHHHHHH-CEECCEECTTTSC-----TTCCEEEEC
T ss_pred HHHHHHHHHHC-CCcccCCC-------CCeEEEEeCChHHHHHHHHHHHhcC-CEEEeecCCCCCC-----CCCceEEEE
Confidence 99999999887 77765432 5688998864 45667888885 66 9999887632111 013589999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++.+++++|+++++++|+++++++
T Consensus 377 ~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 377 PSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CCTTSCHHHHHHHHHHHHHHC---
T ss_pred eeCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987653
No 81
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=2.6e-32 Score=265.89 Aligned_cols=334 Identities=13% Similarity=0.134 Sum_probs=246.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHH-HHHHHHHHc----C--CCCCCcEEEeCC
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL-ARKKVAAFI----N--ASDSGEIVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~----g--~~~~~~v~~t~g 137 (458)
+++++|..+..+ ++++.+.+++.+.+... . ..+.. . ..+ +++++++++ | .++ ++|++|+|
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~--~~y~~--~----~~~~lr~~la~~l~~~~g~~~~~-~~v~~t~g 95 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHG---V--FGYSR--W----KNDEFLAAIAHWFSTQHYTAIDS-QTVVYGPS 95 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTC---C--CCCCC--S----CCHHHHHHHHHHHHHHSCCCCCG-GGEEEESC
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCC---C--CCCCC--C----ChHHHHHHHHHHHHHhcCCCCCH-HHEEEcCC
Confidence 467888877664 57889999998887531 0 00110 1 234 666666665 5 444 38999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC---CCCHHHHHHhhcC-CceEEE
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE---SPDLDKLKEMLSR-KTKLVV 213 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~---~~d~~~l~~~l~~-~~~~v~ 213 (458)
+++++.+++.++ .++||+|+++.++|++. ...++..|++++.+|.++++ .+|++++++.+++ ++++|+
T Consensus 96 ~~~al~~~~~~l----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 167 (390)
T 1d2f_A 96 VIYMVSELIRQW----SETGEGVVIHTPAYDAF----YKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIML 167 (390)
T ss_dssp HHHHHHHHHHHS----SCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHHh----cCCCCEEEEcCCCcHHH----HHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEE
Confidence 999999999988 67899999999999954 55566779999999987542 4799999999986 789999
Q ss_pred EecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCCCCC---cEEEecccCCCCCCc--eeEEE
Q 012718 214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDA---DFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 214 ~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~~~---d~~~~s~~K~~gp~g--~G~l~ 281 (458)
+++++||||.++| +++|+++|+++|+++|+|++|+.... ..++..+.. |. +.|+||.+|++| +|+++
T Consensus 168 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~ 246 (390)
T 1d2f_A 168 LCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGI 246 (390)
T ss_dssp EESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEE
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEE
Confidence 9999999999998 78999999999999999999986332 223222222 67 999999888777 79999
Q ss_pred Ee-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 282 GK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 282 ~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
++ +++++.+.....+ .+..++++...+.++.++++...+ .+++.+++++++++++.+.|
T Consensus 247 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L 306 (390)
T 1d2f_A 247 IENSSSRDAYLSALKG-------------------RDGLSSPSVLALTAHIAAYQQGAP-WLDALRIYLKDNLTYIADKM 306 (390)
T ss_dssp ECSHHHHHHHHHHHHT-------------------TSCCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhh-------------------hcccCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 96 4665554432210 011246677777777677764322 26788889999999999999
Q ss_pred hc-CCCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 361 LS-IPNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 361 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
++ +|++++..+. .+.++++.++. .+..++.+.|.+++||.+++|..|... .++++||+++. ++
T Consensus 307 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~------~~~~~Ris~~~--~~ 372 (390)
T 1d2f_A 307 NAAFPELNWQIPQ------STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEE------GRGFVRLNAGC--PR 372 (390)
T ss_dssp HHHCSSCCCCCCS------BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGG------GTTEEEEECCS--CH
T ss_pred HhhCCCCEEecCC------ccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCC------CCCeEEEEecC--CH
Confidence 88 7787665433 13466788864 577889999984339999998765421 26799999995 68
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012718 438 EDVDEFIHALNETVSFF 454 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~~ 454 (458)
+++++++++|.++++++
T Consensus 373 ~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 373 SKLEKGVAGLINAIRAV 389 (390)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 82
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=7.2e-33 Score=271.37 Aligned_cols=339 Identities=17% Similarity=0.174 Sum_probs=249.3
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeC
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~ 136 (458)
.++++|+.+... .+++.+.+++.+.+....... . + .......++++.+++++ |. ++ ++|++|+
T Consensus 34 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~--~-y----~~~~~~~~l~~~la~~~~~~~g~~~~~-~~v~~t~ 105 (407)
T 2zc0_A 34 VKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSV--M-Y----TPANGIPELREELAAFLKKYDHLEVSP-ENIVITI 105 (407)
T ss_dssp CCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGG--S-C----CCTTCCHHHHHHHHHHHHHHSCCCCCG-GGEEEES
T ss_pred CceEeCCCCCCCchhCCHHHHHHHHHHHHhhccccc--c-C----CCCCCCHHHHHHHHHHHHHhcCCCCCc-ceEEEec
Confidence 467888776543 367788899988887532110 0 1 11122346777777777 84 34 4999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----C--Cce
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----R--KTK 210 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~--~~~ 210 (458)
|+|+|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.++++ +|++++++.++ + +++
T Consensus 106 g~t~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~ 176 (407)
T 2zc0_A 106 GGTGALDLLGRVL----IDPGDVVITENPSYINT----LLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVK 176 (407)
T ss_dssp HHHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHh----cCCCCEEEEeCCChHHH----HHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCce
Confidence 9999999999998 67899999999999954 55566779999999987665 79999999997 6 788
Q ss_pred EE-EEecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCcc----cCCC---CCCCCcEEEecccCCCCCCc--e
Q 012718 211 LV-VIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM----VVDV---QGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 211 ~v-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~----~~~~---~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
+| ++++++||||.++|.+ +|+++|+++|+++|+|++|+.+.. ...+ ...+.+++++|+||++| +| +
T Consensus 177 ~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~ 255 (407)
T 2zc0_A 177 LIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRI 255 (407)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCC
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcce
Confidence 87 5889999999999976 999999999999999999986432 1122 22246689999999888 55 8
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HH-hCHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-ST-IGMQKIHAYEMELAKY 355 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~-~g~~~~~~~~~~l~~~ 355 (458)
|++++++++++.+......+ .. +.+.....++..+++.. .. ..++++++++++++++
T Consensus 256 G~~~~~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (407)
T 2zc0_A 256 GWIIAEGEILKKVLMQKQPI--------------------DF-CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDI 314 (407)
T ss_dssp EEEECCHHHHHHHHHHHTTT--------------------TS-SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHhh--------------------cC-CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 99999987766654332211 11 23444455555555532 11 3466788888999999
Q ss_pred HHHHHhc-CCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 356 LYENLLS-IPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 356 l~~~L~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+.+.|++ .+++++..+. .+.++++.++ +.+..++.+.|.+++||.+++|..|.... ..++++|++++.
T Consensus 315 l~~~L~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~----~~~~~iRis~~~ 384 (407)
T 2zc0_A 315 MLKALENHLPNAEFTKPI------AGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDE----SGKNAIRLNFSR 384 (407)
T ss_dssp HHHHHHHHCTTSCBCCCS------BSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSS----CCTTEEEEECSS
T ss_pred HHHHHHHhCCCCEEecCC------CcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCC----CCCCeEEEEeCC
Confidence 9999976 4676654433 1558899986 46778899999887799999987553210 125799999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
. +++|+++++++|.++++++
T Consensus 385 ~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 385 P-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp S-CTTHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHH
Confidence 5 8899999999999998765
No 83
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4e-33 Score=273.49 Aligned_cols=340 Identities=19% Similarity=0.179 Sum_probs=247.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~-~v~~t~g~ 138 (458)
.++++|+.+... +.++.+.+++.+.+... . ..+.. .....++++.+++++ |.+ ..+ +|++|+|+
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~--~~y~~----~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~ 95 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAIAGG---V--NQYPP----GPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGA 95 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHHHTT---C--CSCCC----TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHH
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHHhcC---C--CCCCC----CCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCH
Confidence 457899888766 57788999999888641 0 01110 111234555666554 754 234 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC---CCCCHHHHHHhhcCCceEEEEe
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+++ +.+|++++++.+++++++|+++
T Consensus 96 ~~al~~~~~~~----~~~gd~Vl~~~~~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~ 167 (411)
T 2o0r_A 96 TEAIAAAVLGL----VEPGSEVLLIEPFYDSY----SPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIIN 167 (411)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEE
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCcHhH----HHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEe
Confidence 99999999988 67899999999999964 4455677999999998753 5689999999998899999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC---CCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD---VQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.+.. +.. +.. .+.|++++|+||.+|++| +|++++
T Consensus 168 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 247 (411)
T 2o0r_A 168 SPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG 247 (411)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEee
Confidence 99999999998 58999999999999999999985432 112 221 457999999999988778 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... +...+.+.....++..+++... ..+++++++++++++++.+.|++
T Consensus 248 ~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~ 305 (411)
T 2o0r_A 248 PAELIAGVRAAKQ---------------------YLSYVGGAPFQPAVALALDTED-AWVAALRNSLRARRDRLAAGLTE 305 (411)
T ss_dssp CHHHHHHHHHHHH---------------------HHTSCCCTTHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---------------------hccCCCChHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887665543221 0012233334455556665432 23678889999999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHh-hhcCeEeccCCCCChhh----HhhcC-CCCeEEEeeCC
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLD-QQYGVATRSGHHCAQPL----HRYLG-VNASARASLHF 433 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~-~~~gi~~~~g~~~~~~~----~~~~g-~~~~lRis~~~ 433 (458)
. ++++..+. .+.++++.++. .+..++.+.|. ++ ||.+.+|..|.... +.... .++++||+++
T Consensus 306 ~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~- 376 (411)
T 2o0r_A 306 I-GFAVHDSY------GTYFLCADPRPLGYDDSTEFCAALPEKV-GVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC- 376 (411)
T ss_dssp H-TCEECCCC------BSSEEEEECGGGTCCCHHHHHHHHHHHH-SEECEEGGGGSCCC--------CCGGGCEEEECC-
T ss_pred c-CCEecCCC------eeEEEEEecCCCCCCCHHHHHHHHHHhC-CEEEcChhhhCCCccccccccccCCCCeEEEEec-
Confidence 7 88876543 14488998874 45778888876 56 99999887552110 00000 1468999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++|+++++++|.+++++.
T Consensus 377 -~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 377 -KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp -SCHHHHHHHHHHHGGGGC--
T ss_pred -CCHHHHHHHHHHHHHHHhcc
Confidence 58999999999999887654
No 84
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=100.00 E-value=2.4e-33 Score=269.90 Aligned_cols=329 Identities=14% Similarity=0.126 Sum_probs=244.8
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++++||+++..+++++.+.+++.+.+..+. .+....+..+++++.+++++|.+++ +|++|+|+|+|+..+
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~---------~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~~g~t~a~~~~ 82 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMTQH---------AGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIA 82 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTCCC---------CSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHH
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhhcc---------ccccccHHHHHHHHHHHHHhCCCCc-cEEEeCCchHHHHHH
Confidence 557999999988999999999988764211 0112346677899999999998765 899999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC-------ceEEEEeccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK-------TKLVVIHHIS 218 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-------~~~v~~~~~~ 218 (458)
+.++ .++||+|++++++|++.... ..++..|++++.++.+ ++.+|++++++.++++ +++|+++++
T Consensus 83 ~~~~----~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~- 154 (359)
T 1svv_A 83 CSLA----LRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT- 154 (359)
T ss_dssp HHHH----CCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-
T ss_pred HHHH----hCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-
Confidence 9998 67899999999999976542 1346679999999986 7788999999999765 899999998
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccc---cCCcccCCCCC----CCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQ---SVPHMVVDVQG----LDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~---~~g~~~~~~~~----~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
||||.++| +++|.++|+++|+++|+|++| +.+..+.+... ...|+++.|++|++++.|+|++++++++++
T Consensus 155 ~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~ 234 (359)
T 1svv_A 155 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKP 234 (359)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCT
T ss_pred CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHH
Confidence 79999999 889999999999999999999 55555443332 247999999999988888999999988877
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.+....++. .+ +.......++. +.+.+.+++++.++++++++++.+.| +.+++++
T Consensus 235 ~~~~~~~~~~~----------------~~---~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~ 291 (359)
T 1svv_A 235 NARHLIKQRGA----------------LM---AKGWLLGIQFE---VLMKDNLFFELGAHSNKMAAILKAGL-EACGIRL 291 (359)
T ss_dssp THHHHHHHTTC----------------CC---TTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCB
T ss_pred HHHHHHhcCCc----------------cc---ccchhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEE
Confidence 66543210100 00 11111222222 23333346788899999999999999 5568877
Q ss_pred eCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
..+.. ++++++.++ .++.+.|.+++||.+.+ .. -+.++++|++++..++++|+++++++|+
T Consensus 292 ~~~~~------~~~~~~~~~----~~~~~~l~~~~gi~v~~-~~--------~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 352 (359)
T 1svv_A 292 AWPSA------SNQLFPILE----NTMIAELNNDFDMYTVE-PL--------KDGTCIMRLCTSWATEEKECHRFVEVLK 352 (359)
T ss_dssp SSCCS------SSEECBEEE----HHHHHHHTTTEECEEEE-EE--------TTTEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCc------cceEEEEcC----HHHHHHHHHhcCEEEEe-cc--------cCCCceEEEEccCcCCHHHHHHHHHHHH
Confidence 65431 557777664 57888888776888721 10 0125689999998899999999999999
Q ss_pred HHHHhh
Q 012718 449 ETVSFF 454 (458)
Q Consensus 449 ~~~~~~ 454 (458)
++++++
T Consensus 353 ~~~~~~ 358 (359)
T 1svv_A 353 RLVAST 358 (359)
T ss_dssp HC----
T ss_pred HHHhcc
Confidence 987654
No 85
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=4.9e-32 Score=264.47 Aligned_cols=340 Identities=15% Similarity=0.119 Sum_probs=248.6
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCC-cEEEeCChhH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSG-EIVFTKNATE 140 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~-~v~~t~g~t~ 140 (458)
+++++.|+.+... +.|+.+.+++.+.+.....++... ...+..+.+.+.+.+.+|.+ ..+ +|++|+|+++
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~------g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~ 102 (396)
T 3jtx_A 29 GMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTA------GLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE 102 (396)
T ss_dssp TCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTT------CCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred CCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCC------CcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence 4788999988766 578889999888765433322111 12333334444444445753 234 8999999999
Q ss_pred HHHHHHHHcCCCCCCCC-----CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEE
Q 012718 141 AINLVAYSWGLSNLKSG-----DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVI 214 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g-----~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~ 214 (458)
++.+++.++ +++| |+|+++.++|++ +...++..|++++.++++++ +.+|++.+++.+++++++|++
T Consensus 103 al~~~~~~~----~~~g~~~~~d~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l 174 (396)
T 3jtx_A 103 ALFSFVQTV----LNPVSDGIKPAIVSPNPFYQI----YEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFV 174 (396)
T ss_dssp HHHHHHHHH----CCC---CCCCEEEEEESCCHH----HHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEE
T ss_pred HHHHHHHHH----hCCCCccCCCEEEEcCCCcHh----HHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEE
Confidence 999999988 5675 799999999994 45566778999999998654 467999999999889999999
Q ss_pred ecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCcc----cCCC--------CCCCCcEEEecccCCCCCCc--e
Q 012718 215 HHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM----VVDV--------QGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 215 ~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~----~~~~--------~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
++++||||.++|.+ +|+++|+++|+++|+|++|+.... +... ...+.++++.|+||.+|.+| +
T Consensus 175 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 254 (396)
T 3jtx_A 175 CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS 254 (396)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC
T ss_pred ECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccce
Confidence 99999999999955 599999999999999999985322 2221 12568899999999877666 8
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLY 357 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~ 357 (458)
|+++.++++++.+..... ...++++.....++..+++. ...+++.+++++++++++.
T Consensus 255 G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~ 311 (396)
T 3jtx_A 255 GFVAGDAELLKNFLLYRT---------------------YHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVI 311 (396)
T ss_dssp EEEEECHHHHHHHHHHHH---------------------HHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHh---------------------hcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHH
Confidence 999998887766653221 11245666666776666653 2236788889999999999
Q ss_pred HHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 358 ENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 358 ~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
+.|++. +.+..+. .+.++++.+++.+..++.+.|.+++||.+.+|..|.......-...+++||+++. +.
T Consensus 312 ~~l~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~ 381 (396)
T 3jtx_A 312 PILQQV--FDVKLPD------ASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DV 381 (396)
T ss_dssp HHHTTT--SCCCCCS------SSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CH
T ss_pred HHHHhc--CCccCCC------eeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CH
Confidence 999875 2222222 2568899998767788998885444999999987654211001126899999984 99
Q ss_pred HHHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNETV 451 (458)
Q Consensus 438 ~di~~l~~~l~~~~ 451 (458)
+++++++++|.+++
T Consensus 382 ~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 382 ATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 86
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=3.4e-34 Score=284.33 Aligned_cols=348 Identities=11% Similarity=0.062 Sum_probs=252.5
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCC--------C-cchhhhHHHHHHHHHHHH
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHR--------G-IHFLSAKATDEYELARKK 119 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~ 119 (458)
..++++|+.+ +..+|||++++++.|+.+.+++.........++.. . ....+....+..+++++.
T Consensus 69 ~~~~~~~~~~-------~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (456)
T 2z67_A 69 KLFLKFLSMM-------DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILES 141 (456)
T ss_dssp HHHHHHHHTT-------BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------cccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHH
Confidence 4456778876 45689999999999999999887743211111100 0 011122356778889999
Q ss_pred HHHHcCCCCCCcEEEeCChh-HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC---CCCCC
Q 012718 120 VAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL---NDDES 195 (458)
Q Consensus 120 la~~~g~~~~~~v~~t~g~t-~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~---~~~~~ 195 (458)
+++++|+++. ++||+|+| .++..++.++. ...+++.|++++++|++. ...++..|++++.++. ++++.
T Consensus 142 la~~~g~~~~--~~~t~g~te~a~~~al~~~~--~~~~~~~vi~~~~~h~s~----~~~~~~~G~~~~~v~~~~~~~~~~ 213 (456)
T 2z67_A 142 FFKQLGLNVH--AIATPISTGMSISLCLSAAR--KKYGSNVVIYPYASHKSP----IKAVSFVGMNMRLVETVLDGDRVY 213 (456)
T ss_dssp HHHHTTCCCE--EEEESSCHHHHHHHHHHHHH--HHHCCCEEEEECCCCHHH----HHHHHHTTCEEEEECCEEETTEEE
T ss_pred HHHHcCCCCC--EEEeCcHHHHHHHHHHHHHH--HhcCCCEEEEECCCcHHH----HHHHHHcCCCceEEEEeccCCCCC
Confidence 9999999853 99999999 45554555542 112677899999999963 4556678999999987 56688
Q ss_pred CCHHHHHHhh-c----CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCc---ccCCCCCC--CCcEEE
Q 012718 196 PDLDKLKEML-S----RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQGL--DADFLV 265 (458)
Q Consensus 196 ~d~~~l~~~l-~----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~~~--~~d~~~ 265 (458)
+|+++|++++ + .++.+|++..++|+||.+.|+++|.++|+++|+++|+|++|+... .+.+...+ ++|+++
T Consensus 214 ~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~ 293 (456)
T 2z67_A 214 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV 293 (456)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEE
T ss_pred cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEE
Confidence 9999999999 5 367788899999999999999999999999999999998887433 33332222 799999
Q ss_pred ecccC-CCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 266 ASSHK-MCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 266 ~s~~K-~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+|+|| +++|.|+|+++++ +++++.+.+.+.|+. +....+++.+++..+...+++
T Consensus 294 ~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~------------------------~~~~~~~~~aal~~l~~~~~~ 349 (456)
T 2z67_A 294 SSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA------------------------SATPVVNTLVSLLSMGSKNYL 349 (456)
T ss_dssp EEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB------------------------CSHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC------------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 99999 4679999999995 456555543332211 112356677777777777889
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEe--CCCChHHHHHHHhhhcCe---Eec------c
Q 012718 344 KIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNV--ENIHPTDIATLLDQQYGV---ATR------S 409 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~gi---~~~------~ 409 (458)
++.++..++++++.+.|++++ +..+..+. ++++|++ ++. ..++.+.|.++ || .+. .
T Consensus 350 ~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--------~~v~~~~~~~~~-~~~l~~~L~~~-gi~~~rv~~~~g~f~ 419 (456)
T 2z67_A 350 ELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--------SPIASCISVNSD-PVEIAAKLYNL-RVTGPRGIKKTDHFG 419 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--------CSSEEEEECSSC-HHHHHHHHHHT-TEESCEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCEecCCC--------CeEEEEEecccH-HHHHHHHHHHc-CCCcceEEeecCccc
Confidence 999999999999999998875 65554321 5667777 432 46888999888 76 222 1
Q ss_pred CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 410 g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
|.+|.. ...+++|+|++.++|++||++++++|++++
T Consensus 420 G~~~~~------~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 420 NCYLGT------YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HTCSSC------CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cccccc------cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 333321 114799999999999999999999998754
No 87
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=9.5e-32 Score=270.84 Aligned_cols=356 Identities=15% Similarity=0.113 Sum_probs=249.5
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
..||++...++.|..+...+ +.. ..|++...+..+....+..+++++.+++++|.+.. +++||+|+|+|+.+++.
T Consensus 109 p~~~~~~~~~~~~~~~~~~~---l~~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~-~~~~t~ggtea~~~al~ 183 (515)
T 2jis_A 109 PRFFNQLFSGLDPHALAGRI---ITE-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG-DGIFCPGGSISNMYAVN 183 (515)
T ss_dssp TTEESSSCCCCCHHHHHHHH---HHH-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC-EEEEESSHHHHHHHHHH
T ss_pred CCeEEEeeCCCCHHHHHHHH---HHH-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC-CeEEcCCcHHHHHHHHH
Confidence 36999998888887776633 222 12333333444556677888899999999999854 89999999999998887
Q ss_pred HcCCC---CCC-CCC------EEEEcCCCCccchHHHHHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhcC------C
Q 012718 148 SWGLS---NLK-SGD------EVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------K 208 (458)
Q Consensus 148 ~l~~~---~~~-~g~------~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~------~ 208 (458)
+++.. .++ +|+ +|+++..+|++.. ..++..|. +++.+|.++++.+|+++|++++++ +
T Consensus 184 ~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~----~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~ 259 (515)
T 2jis_A 184 LARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ----KGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAV 259 (515)
T ss_dssp HHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH----HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhHHhhcCccccCCeEEEECCCccHHHH----HHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCC
Confidence 76210 012 454 8999999999664 44455576 899999988899999999999975 4
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-----CCCC-CCcEEEecccCCCC-CCceeEEE
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-----VQGL-DADFLVASSHKMCG-PTGIGFLF 281 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~~g-p~g~G~l~ 281 (458)
+++|++++++|+||.+.|+++|+++|+++|+++|+|++|+.+..+.+ +... ++|++++|+||+++ |.|+|+++
T Consensus 260 ~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~ 339 (515)
T 2jis_A 260 PFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 339 (515)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEE
Confidence 89999999999999999999999999999999999999998877544 3443 68999999999654 88899999
Q ss_pred Eecc--cccc----CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 282 GKSD--LLSA----MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 282 ~~~~--~~~~----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
++++ +++. ..++..++........+...+ ..+.+... ....++++++.+...|++++.++..+++++
T Consensus 340 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~-----~~~~~rr~--~al~~~~~l~~lg~~g~~~~~~~~~~~a~~ 412 (515)
T 2jis_A 340 LQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK-----VVQCGRRV--DCLKLWLMWKAQGDQGLERRIDQAFVLARY 412 (515)
T ss_dssp ESCCSCHHHHHHCC---------CCSCGGGCCGGG-----CSCSSCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeChHHHHHHHhcCCchhccCCcccccccCCCCCC-----CCCCCCcc--cHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9987 4443 233332221100000000000 01111110 124555566777777889999999999999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC------ChH-----------HHHHHHhhhcCeEeccCCCCChhhH
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI------HPT-----------DIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~-----------~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
+.+.|++++++++..++. .++++|+.... +.. .+.+.+.+. |+.+.... .
T Consensus 413 l~~~L~~~~g~~~~~~~~------~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~----~-- 479 (515)
T 2jis_A 413 LVEEMKKREGFELVMEPE------FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQ----P-- 479 (515)
T ss_dssp HHHHHHTSTTEEESSCCS------SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEE----E--
T ss_pred HHHHHhcCCCEEEeCCCC------eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEE----E--
Confidence 999999999999987642 45677865210 111 255666666 75432100 0
Q ss_pred hhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHh
Q 012718 419 RYLGVNASARASL-HFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 419 ~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.-+..+++|+++ ++++|++||+++++.|++++++
T Consensus 480 -~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 480 -HGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp -ETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred -ECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 001246899999 7999999999999999988764
No 88
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=4.3e-33 Score=274.31 Aligned_cols=342 Identities=12% Similarity=0.127 Sum_probs=250.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g~ 138 (458)
++.+.|..+... ++|+.+.+++.+.+.... ... .+ .......++++.++++++ +++.++|++|+|+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~~--~y----~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~ 100 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-MLN--QY----TKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGG 100 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCG-GGG--SC----CCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCCC-ccC--CC----CCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECCh
Confidence 567899988766 578899999998886521 000 00 001112345555555554 3331389999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----C--------CCCCHHHHHHhhc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----D--------ESPDLDKLKEMLS 206 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----~--------~~~d~~~l~~~l~ 206 (458)
++++..++.++ +++||+|+++.++|++. ...++..|++++.+++++ + +.+|++++++.++
T Consensus 101 ~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~ 172 (422)
T 3fvs_A 101 YGALFTAFQAL----VDEGDEVIIIEPFFDCY----EPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT 172 (422)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred HHHHHHHHHHH----cCCCCEEEEcCCCchhh----HHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC
Confidence 99999999988 68999999999999954 555667899999999876 3 3579999999999
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCC----CCCCcEEEecccCCCCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQ----GLDADFLVASSHKMCGPT 275 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~----~~~~d~~~~s~~K~~gp~ 275 (458)
+++++|++++++||||.++| +++|+++|+++|+++|+|++|+... .+.++. ..+.++++.|+||.+|++
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 99999999999999999995 8899999999999999999998522 222221 224668999999988866
Q ss_pred c--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH------HHhCHHHHHH
Q 012718 276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL------STIGMQKIHA 347 (458)
Q Consensus 276 g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~------~~~g~~~~~~ 347 (458)
| +|++++++++++.+..... ....+.+.....++..+++.. ....++++.+
T Consensus 253 G~r~G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 311 (422)
T 3fvs_A 253 GWKVGWVLGPDHIMKHLRTVHQ---------------------NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQ 311 (422)
T ss_dssp GGCCEEEECCHHHHHHHHHHHH---------------------TTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHH
T ss_pred cceEEEEEeCHHHHHHHHHHHh---------------------hccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 6 8999999887766543221 112345666666666666541 1123678889
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC----CC----------hHHHHHHHhhhcCeEeccCCCC
Q 012718 348 YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN----IH----------PTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~----------~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
+++++++++.+.|+++ ++++..+.. +.++++.++. .. ..++.+.+.+++||.+.+|..|
T Consensus 312 ~~~~~~~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f 384 (422)
T 3fvs_A 312 AMQRCRDHMIRSLQSV-GLKPIIPQG------SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIF 384 (422)
T ss_dssp HHHHHHHHHHHHHHTT-TCEEEBCSB------SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHc-CCeecCCCe------eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHh
Confidence 9999999999999998 888765541 5577887642 11 4477777554449999999876
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
....... ...+++|++++. +++++++++++|++++++
T Consensus 385 ~~~~~~~-~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 385 YSVPHQK-HFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp SCHHHHT-TSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred cCCcCCC-CCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 5432111 126899999985 999999999999998865
No 89
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=1e-31 Score=270.13 Aligned_cols=357 Identities=15% Similarity=0.135 Sum_probs=248.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHH-hccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC-CCcEEEeCChhHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEIVFTKNATEAINLVA 146 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~~v~~t~g~t~a~~~~~ 146 (458)
.||++...+..|..+... ++.. .+.+. ..+..+.......+++++.+++++|.+. ..+++||+|+|+|+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~---~l~~~~n~~~--~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al 168 (504)
T 2okj_A 94 RFFNQLSTGLDIIGLAGE---WLTSTANTNM--FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSI 168 (504)
T ss_dssp TEESSSSCCCCHHHHHHH---HHHHHHCCBS--SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHH
T ss_pred CEEEEccCCCCHHHHHHH---HHHHhhccCC--CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHH
Confidence 588888777777665442 2222 23332 2233334456666778899999999983 238999999999999999
Q ss_pred HHcCCCCC----CCC-----C-EEEEcCCCCccchHHHHHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhcC------
Q 012718 147 YSWGLSNL----KSG-----D-EVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------ 207 (458)
Q Consensus 147 ~~l~~~~~----~~g-----~-~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~------ 207 (458)
.+++.... ++| + .|+++.++|++.. ..++..|. +++.+|.++++.+|+++|++++++
T Consensus 169 ~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~----~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~ 244 (504)
T 2okj_A 169 MAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK----KAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGY 244 (504)
T ss_dssp HHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH----HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH----HHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88731000 134 5 7999999999654 44444565 899999988899999999999976
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc-----CCCCCC-CCcEEEecccCCCC-CCceeEE
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQGL-DADFLVASSHKMCG-PTGIGFL 280 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~~~~~-~~d~~~~s~~K~~g-p~g~G~l 280 (458)
++++|++++++|+||.+.|+++|+++|+++|+++|+|++|+.+... ..+... ++|++++|+||+++ |.|+|++
T Consensus 245 ~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l 324 (504)
T 2okj_A 245 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 324 (504)
T ss_dssp EEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEE
Confidence 5899999999999999999999999999999999999999977653 223322 68999999999766 8889999
Q ss_pred EEecc-ccc----cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 281 FGKSD-LLS----AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 281 ~~~~~-~~~----~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
+++++ +++ ...++..++........+...+ .++.+... ....+.++++.+...|++++.++..+++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~rr~--~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~ 397 (504)
T 2okj_A 325 LVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK-----AIQCGRHV--DIFKFWLMWKAKGTVGFENQINKCLELAEY 397 (504)
T ss_dssp EESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGG-----SSCSSCBC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHhcCCCccccCCcccccCcCCcccC-----CCCCCCCc--cHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99874 443 2334443222100000000111 01111110 123445556666666788999999999999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC-----------------hHHHHHHHhhhcCeE-eccCCCCChhh
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH-----------------PTDIATLLDQQYGVA-TRSGHHCAQPL 417 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~l~~~~gi~-~~~g~~~~~~~ 417 (458)
+.+.|++++++++..+.+ ...++++|...... ..++.+.|.++ |+. +.++..
T Consensus 398 l~~~L~~~~~~~~~~~~~----p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~----- 467 (504)
T 2okj_A 398 LYAKIKNREEFEMVFNGE----PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQ----- 467 (504)
T ss_dssp HHHHHTTCTTEEESSSSC----CSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEE-----
T ss_pred HHHHHhcCCCEEEEecCC----CCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEE-----
Confidence 999999999999986311 12667788763210 24678888888 854 332210
Q ss_pred HhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhh
Q 012718 418 HRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 418 ~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+..+++|++++ ++++++||+++++.|+++++++
T Consensus 468 ---~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 468 ---GDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp ---TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ---CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 011358999996 8899999999999999988754
No 90
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=2.5e-32 Score=262.48 Aligned_cols=284 Identities=15% Similarity=0.186 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..++|+++|+++|++++ +|++|+|+++++..++.++ +++| |+|+++.|+|++. ...++..|++++.++.+
T Consensus 60 ~~~lr~~la~~~~~~~~-~v~~~~G~~~ai~~~~~~~----~~~g~d~Vl~~~p~~~~~----~~~~~~~g~~~~~v~~~ 130 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAF----CEPGKDAILYCPPTYGMY----SVSAETIGVECRTVPTL 130 (356)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHH----CCTTTCEEEECSSSCTHH----HHHHHHHTCEEEECCCC
T ss_pred HHHHHHHHHHHhCCChH-HEEEcCCHHHHHHHHHHHH----hCCCCCEEEEeCCChHHH----HHHHHHcCCEEEEeeCC
Confidence 45899999999998865 9999999999999999988 6789 9999999999954 55566679999999988
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCcc--c-CCC-CCCCCcEE
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM--V-VDV-QGLDADFL 264 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~--~-~~~-~~~~~d~~ 264 (458)
+++.+|++++++.++ ++++|++++++||||.++|.+ +|+++|+ +|+++|+|++|+.... + .++ ...+.+++
T Consensus 131 ~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~ 208 (356)
T 1fg7_A 131 DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAI 208 (356)
T ss_dssp TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEE
T ss_pred CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEE
Confidence 777889999999998 899999999999999999955 4555566 9999999999984331 1 222 34567899
Q ss_pred EecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 265 VASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 265 ~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
+.|+||.+|++| +|++++++++++.+..... .+ +.+.....++.++++......+
T Consensus 209 ~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--------------------~~---~~~~~~~~a~~~~l~~~~~~~~ 265 (356)
T 1fg7_A 209 LRTLSKAFALAGLRCGFTLANEEVINLLMKVIA--------------------PY---PLSTPVADIAAQALSPQGIVAM 265 (356)
T ss_dssp EEESSSTTCCGGGCCEEEEECHHHHHHHHHHSC--------------------SS---CSCHHHHHHHHHHTSHHHHHHH
T ss_pred EecchHhhcCchhhhEEEEeCHHHHHHHHHhcC--------------------CC---CCCHHHHHHHHHHhcCccHHHH
Confidence 999999999777 8999998887765543211 01 3455555555555543211116
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEecc-CCCCChhhHhhc
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS-GHHCAQPLHRYL 421 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~-g~~~~~~~~~~~ 421 (458)
++..++++++++++.+.|++++++....+. .+++++++++ +..++.+.|.++ ||.+++ |..|
T Consensus 266 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------~~~~~~~~~~--~~~~l~~~L~~~-gI~v~~~g~~~-------- 328 (356)
T 1fg7_A 266 RERVAQIIAEREYLIAALKEIPCVEQVFDS------ETNYILARFK--ASSAVFKSLWDQ-GIILRDQNKQP-------- 328 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEEECCC------SSSEEEEEET--THHHHHHHHHHT-TEECEECTTST--------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEECCC------CCeEEEEECC--CHHHHHHHHHHC-CEEEEECCCCC--------
Confidence 778888999999999999988654333332 1678899987 677899999877 999998 7644
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+.++++||+++ +.+|+++++++|+++
T Consensus 329 ~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 329 SLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp TCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 23569999998 689999999998753
No 91
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=100.00 E-value=3.2e-32 Score=269.11 Aligned_cols=317 Identities=19% Similarity=0.205 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE
Q 012718 106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185 (458)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~ 185 (458)
+.+..+..+++++.+++++|.++. ++++++|+|.+++.+..++ .+++||+|+++.++|++...++..+++..|+++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~-~i~~~~g~taa~ea~~~a~---~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLAL---RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHHH---HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcc-ceEEeCcHHHHHHHHHHHH---hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 445678889999999999999864 7899999995555554443 246899999999999999888888888899999
Q ss_pred EEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEecc-ccCCcccCCCCCCCCcEE
Q 012718 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC-QSVPHMVVDVQGLDADFL 264 (458)
Q Consensus 186 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a-~~~g~~~~~~~~~~~d~~ 264 (458)
+.++. +++.+|+++ +++++++|+++++ |+||.+.|+++|+++||++|+++|+|.. ++.|..... ..+++|++
T Consensus 179 ~~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~ 251 (438)
T 1wyu_A 179 LTLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIA 251 (438)
T ss_dssp EEECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEE
T ss_pred EEEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEE
Confidence 99997 567777766 6778999999999 9999999999999999999999997755 555654332 44679999
Q ss_pred EecccC-----C-CCCCceeEEEEeccccccCCCccccCcce----EeeecCCCCCCCCCCccCCCCCCH---HHHHHHH
Q 012718 265 VASSHK-----M-CGPTGIGFLFGKSDLLSAMPPFLGGGEMI----SDVFLDHSTFADPPSRFEAGTPAI---GEAIGLG 331 (458)
Q Consensus 265 ~~s~~K-----~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~gt~~~---~~~~~l~ 331 (458)
++|.+| + +|| |+|++++++++++.+.....|+... ......... .....+++.+|+++ ..+.++.
T Consensus 252 ~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~-~~~~~r~~~~t~~~~~~~~~~a~~ 329 (438)
T 1wyu_A 252 VGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQA-REQYIRRAKAKSNITTNAQLTALM 329 (438)
T ss_dssp EEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGG-GSHHHHGGGSSCCCCSCCHHHHHH
T ss_pred EECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccc-cccccchhcccCCccchHHHHHHH
Confidence 999666 2 345 8999999999888876554443210 000000000 00112445566665 4455555
Q ss_pred HH--HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEe--
Q 012718 332 AA--IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVAT-- 407 (458)
Q Consensus 332 ~a--l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~-- 407 (458)
++ +..+...|++++.++..++++++.+.|++++|+++..+.+ ...++.++++ .+..++.+.|.++ ||.+
T Consensus 330 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~L~~~-gi~v~~ 402 (438)
T 1wyu_A 330 GAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-----FFNEFALALP-KDPEAVRRALAER-GFHGAT 402 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-----BCSEEEEECS-SCHHHHHHHHHHT-TCCCCE
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC-----eEEEEEEeCC-CCHHHHHHHHHHC-Cceecc
Confidence 55 6777666789999999999999999999998999876531 1335566654 4678999999988 9998
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+++.+|. ++++|+|++.++|.+|+++++++|++++
T Consensus 403 ~~~~~~~---------~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 403 PVPREYG---------ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ECCTTSC---------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccccccC---------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 5665442 5789999999999999999999998764
No 92
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=3.2e-32 Score=268.68 Aligned_cols=342 Identities=15% Similarity=0.154 Sum_probs=251.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~-~v~~t~g~ 138 (458)
+++++|+.+..+ +.++.+.+++.+.+....... .. +.......++++.+++++ |.+ ..+ +|++|+|+
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~----~~--y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~ 110 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLA----NQ--YTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGA 110 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGG----GS--CCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhccccCc----cC--CCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecCh
Confidence 457999988765 577889999988875421000 00 000111235556666654 754 235 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC----------CCCCHHHHHHhhcCC
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----------ESPDLDKLKEMLSRK 208 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~----------~~~d~~~l~~~l~~~ 208 (458)
++|+..++.++ +++||+|+++.++|++. ...++..|++++.++.+++ +.+|++.+++.++++
T Consensus 111 ~~a~~~~~~~~----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 182 (429)
T 1yiz_A 111 YEALYATIQGH----VDEGDEVIIIEPFFDCY----EPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK 182 (429)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCchhH----HHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccC
Confidence 99999999998 67899999999999965 4445667999999998753 468999999999889
Q ss_pred ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc------ccC-CCC-CCCCcEEEecccCCCCCCc-
Q 012718 209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQ-GLDADFLVASSHKMCGPTG- 276 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~------~~~-~~~-~~~~d~~~~s~~K~~gp~g- 276 (458)
+++|++++++||||.++| +++|+++|+++|+++|+|++|+... .++ .+. ..+.|+++.|+||.+|++|
T Consensus 183 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 183 TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence 999999999999999997 8899999999999999999998422 122 232 3468999999999988888
Q ss_pred -eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-----HH-HhCHHHHHHHH
Q 012718 277 -IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-----LS-TIGMQKIHAYE 349 (458)
Q Consensus 277 -~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-----~~-~~g~~~~~~~~ 349 (458)
+|++++++++++.+..... ....+.+.....++.++++. .. ...++++++++
T Consensus 263 r~G~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (429)
T 1yiz_A 263 KIGWAYGPEALLKNLQMVHQ---------------------NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGEL 321 (429)
T ss_dssp CCEEEESCHHHHHHHHHHHH---------------------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHH
T ss_pred ceEEEEeCHHHHHHHHHHHh---------------------hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 9999999887765543211 11234566666666666665 21 12267888999
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------------ChHHHHHHHh-hhcCeEeccCCCCCh
Q 012718 350 MELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------------HPTDIATLLD-QQYGVATRSGHHCAQ 415 (458)
Q Consensus 350 ~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~l~-~~~gi~~~~g~~~~~ 415 (458)
+++++++.+.|+++ ++++..+. .+.++++.+++. +..++.+.|. ++ ||.+.+|..|..
T Consensus 322 ~~~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-gv~v~~g~~f~~ 393 (429)
T 1yiz_A 322 MAKRDYMASFLAEV-GMNPTVPQ------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSV-GLQGIPPSAFYS 393 (429)
T ss_dssp HHHHHHHHHHHHHH-TCEEEECS------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHT-SEECBCGGGGSC
T ss_pred HHHHHHHHHHHHhC-CCcccCCC------cceEEEEEcccccccccccccccCCCHHHHHHHHHHhC-CEEEeCchHhCC
Confidence 99999999999887 77776443 155889998752 3567888776 55 999998864432
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
...... .++++||+++ +++++|++++++|.+++++
T Consensus 394 ~~~~~~-~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 394 EPNKHL-GEDFVRYCFF--KKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp GGGGGG-TTTEEEEECC--SCHHHHHHHHHHHHHHSCC
T ss_pred CcccCC-CCCeEEEEec--CCHHHHHHHHHHHHHhccC
Confidence 110000 2579999998 5899999999999988753
No 93
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2.2e-32 Score=268.01 Aligned_cols=337 Identities=15% Similarity=0.114 Sum_probs=249.7
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
++++++|+.+..+ +.++.+.+++ +.+... .. .+. ......++++.++++++ .++ ++|++|+|
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~---~~--~y~----~~~g~~~l~~~la~~~~~~~g~~~~~-~~v~~~~g 110 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPE---VV--YYS----HSAGIWELREAFASYYKRRQRVDVKP-ENVLVTNG 110 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCCS---SC--CCC----CTTCCHHHHHHHHHHHHHTSCCCCCG-GGEEEESH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhcC---CC--CCC----CCCCcHHHHHHHHHHHHHHhCCCCCH-HHEEEeCC
Confidence 4678999998876 5677888888 765421 10 010 11223466777777764 333 48999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+|+|+..++.++ +++||+|+++.++|++. ...++..|++++.++.++ ++.+ +++|++.+++++++|+++
T Consensus 111 ~t~a~~~~~~~~----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~ 181 (409)
T 2gb3_A 111 GSEAILFSFAVI----ANPGDEILVLEPFYANY----NAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLS 181 (409)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCTHH----HHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEE
T ss_pred HHHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEEC
Confidence 999999999988 68899999999999954 445566799999999875 2334 788999998899999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC-CCC-CCCcEEEecccCCCCCCc--eeEEEEec-
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD-VQG-LDADFLVASSHKMCGPTG--IGFLFGKS- 284 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~-~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~- 284 (458)
+++||||.++| +++|.++|+++|+++|+|++|+.+.. +.. +.. .+.|++++|+||.+|++| +|++++++
T Consensus 182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 182 NPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 99999999986 78999999999999999999986542 122 222 257999999999998777 89999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+...... + . +++.....++.++++.. ...++++.++++++++++.+.|+++
T Consensus 262 ~l~~~l~~~~~~--------------------~-~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~- 317 (409)
T 2gb3_A 262 ELISHAMKLAQG--------------------R-L-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEH- 317 (409)
T ss_dssp HHHHHHHHHHHH--------------------S-C-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhc--------------------c-C-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 777665433211 1 1 45555555665666432 2236778888999999999999887
Q ss_pred CEEE-eCCCCCCcCccccEEEEEeCCCChHHHHHHHhhh-----cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 365 NIRI-YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQ-----YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 365 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-----~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
++++ ..+. .+.++++.+++.+..++.+.|.++ +||.+.+|..|.... -..++++|++++ ++++
T Consensus 318 g~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~---~~~~~~iRis~~--~~~e 386 (409)
T 2gb3_A 318 GLKRFTKPS------GAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTP---GLGKKEIRIACV--LEKD 386 (409)
T ss_dssp TCCCBCCCS------BSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSST---TTTSSEEEEECC--SCHH
T ss_pred CceeeeCCC------eeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCC---CCCCCEEEEEeC--CCHH
Confidence 7766 4332 145777788766778899988865 599999886443210 012579999999 7999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 012718 439 DVDEFIHALNETVSFFNV 456 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~~ 456 (458)
|+++++++|+++++++++
T Consensus 387 ~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 387 LLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999987653
No 94
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2.8e-32 Score=268.68 Aligned_cols=341 Identities=13% Similarity=0.126 Sum_probs=250.3
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C---CCCCCcEEEe
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N---ASDSGEIVFT 135 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~~v~~t 135 (458)
++++.|..+... .+++.+.+++.+.+......... +.......++++.+++++ | ++++ +|++|
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~------y~~~~g~~~lr~~la~~l~~~~g~~~~~~~-~v~~t 115 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQ------YSTTEGDPVLKQQILKLLERMYGITGLDED-NLIFT 115 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTS------CCCTTCCHHHHHHHHHHHHHHHCCCSCCGG-GEEEE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcC------CCCCCCCHHHHHHHHHHHHhccCCCCCCcc-cEEEe
Confidence 567888766433 36788899998887652100000 011122346777888877 8 4443 99999
Q ss_pred CChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--------
Q 012718 136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-------- 207 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------- 207 (458)
+|+++++.+++.++ +++||+|+++.++|++ +...++..|++++.++.++++ +|++.+++.+++
T Consensus 116 ~G~~~al~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 116 VGSQQALDLIGKLF----LDDESYCVLDDPAYLG----AINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp EHHHHHHHHHHHHH----CCTTCEEEEEESCCHH----HHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGG
T ss_pred ccHHHHHHHHHHHh----CCCCCEEEEeCCCcHH----HHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCC
Confidence 99999999999988 6789999999999995 455566789999999987665 799999998876
Q ss_pred CceEE-EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCC---CCCCCcEEEecccCCCCCCc
Q 012718 208 KTKLV-VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV---QGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 208 ~~~~v-~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~---~~~~~d~~~~s~~K~~gp~g 276 (458)
++++| ++++++||||.++| +++|+++|+++|+++|+|++|+.... +..+ ...+.+++++|+||++| +|
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G 265 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PG 265 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GG
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cc
Confidence 68887 58999999999998 56899999999999999999986332 1222 22356799999999988 67
Q ss_pred --eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHH
Q 012718 277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STIGMQKIHAYEMELA 353 (458)
Q Consensus 277 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~~~~~~~~l~ 353 (458)
+|++++++++++.+......+ ..+.+.....++..+++.. ....++++++++++++
T Consensus 266 ~r~G~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (425)
T 1vp4_A 266 LRIGMVAGSKEFIRKIVQAKQSA---------------------DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKR 324 (425)
T ss_dssp GCEEEEECCHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHH
T ss_pred cceEEEeeCHHHHHHHHHHhhhh---------------------cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 799999988776655322211 1234555555665666542 0112567788888999
Q ss_pred HHHHHHHhcC-C---CEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 354 KYLYENLLSI-P---NIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 354 ~~l~~~L~~~-~---~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
+++.+.|++. + ++++..+. .+.++++.++ +.+..++.+.|.++ ||.+.+|..|.... ..++++|
T Consensus 325 ~~l~~~L~~~~~~~~g~~~~~~~------~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~----~~~~~iR 393 (425)
T 1vp4_A 325 TVMLNALEEYFSDIPGVKWVKSE------GGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYD----EPSPSMR 393 (425)
T ss_dssp HHHHHHHHHHSTTSTTCEECCCS------BSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTC----CCCSEEE
T ss_pred HHHHHHHHHhCCCCCceEEecCC------ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCC----CCCCeEE
Confidence 9999999764 4 58776443 1568999987 45667899999999 99999887543210 1257999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 429 ASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|+++.. +++|+++++++|.++++++.+
T Consensus 394 is~~~~-~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 394 LSFCLP-PDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp EECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 999973 899999999999999987644
No 95
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=100.00 E-value=5.7e-32 Score=264.14 Aligned_cols=341 Identities=16% Similarity=0.159 Sum_probs=250.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINLVA 146 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~~~~ 146 (458)
.+|..+.+..++|+.+.+++.++. +...+....+....+..+++++.+++++|++++++|++ |+|+|+|+++++
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTA-----AALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAA 114 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTT-----TTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcC-----CCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHH
Confidence 355666677788999999887631 01011112233456678899999999999984348998 999999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
.++ +++| .+.+....|.. .+...+... |++++.++++ ++..+.. .+++++++|++++++||||.+
T Consensus 115 ~~l----~~~g-v~~v~~~~~~~---~~~~~~~~~~~g~~~~~v~~~-~g~~~~~----~i~~~~~~v~~~~~~nptG~~ 181 (398)
T 2fyf_A 115 FGL----IDKR-SLHLTYGEFSA---KFASAVSKNPFVGEPIIITSD-PGSAPEP----QTDPSVDVIAWAHNETSTGVA 181 (398)
T ss_dssp HHT----CSSC-EEEEECSHHHH---HHHHHHHHCTTSCCCEEEECC-TTCCCCC----CCCTTCSEEEEESEETTTTEE
T ss_pred HHh----cCCC-eEEEeCCHHHH---HHHHHHHHhCCCCceEEEecC-CCCCCCc----cccCCCCEEEEeCcCCCccee
Confidence 988 5666 33344433321 123334555 8899999987 3332222 256789999999999999999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCC-ceeEEEEeccccccCC----------Cc
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLSAMP----------PF 293 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~-g~G~l~~~~~~~~~l~----------~~ 293 (458)
.|+++|.++ +|+++|+|++|+.+..++++. ++|++++|+||++|+. |+|++++++++++.+. ++
T Consensus 182 ~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~ 256 (398)
T 2fyf_A 182 VAVRRPEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDF 256 (398)
T ss_dssp CCCCCCTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGG
T ss_pred cchHHhhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcE
Confidence 999988776 899999999999988776654 3899999999988876 5999999998876652 11
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
..++.... .+ ......+|++...+.++.++++.+.+.| ++++.++.+++++++.+.|++++++++..+.
T Consensus 257 ~~~~~~~~-------~~---~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 326 (398)
T 2fyf_A 257 LSLPIAVE-------NS---LKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTD 326 (398)
T ss_dssp GCHHHHHH-------HH---TTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCS
T ss_pred EehHHHhh-------hc---ccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCC
Confidence 11110000 00 0013346889988889999999888776 8999999999999999999998889887522
Q ss_pred CCCcCcccc-EEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAA-LCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 373 ~~~~~~~~~-~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+ ..+++ +++|.++ +.+..++.+.|.++ ||.+++|.. .++ .+++|||++.+++++|+++++++|+++
T Consensus 327 ~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~-------~~~-~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 327 P---GLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPYR-------KLG-RNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp G---GGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCCT-------TTC-SSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred h---hhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCcc-------cCC-CCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 1 12355 8999986 56788999999998 999987621 122 578999999999999999999999998
Q ss_pred HHh
Q 012718 451 VSF 453 (458)
Q Consensus 451 ~~~ 453 (458)
+++
T Consensus 395 l~~ 397 (398)
T 2fyf_A 395 VER 397 (398)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 96
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=100.00 E-value=1.2e-31 Score=259.59 Aligned_cols=340 Identities=15% Similarity=0.094 Sum_probs=241.9
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.+++++.+.+++.+.+.....++ ....+++++.+++++|.+ ++++|+|+|+|+..++.++.. .++
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~-~~~ 72 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSE-FSA 72 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSC-CCT
T ss_pred CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcc-cCC
Confidence 46788999999998875421111 235678999999999986 899999999999999998831 167
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH 235 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~ 235 (458)
+||+|+++.++|++... .++..|++++.+++++++.+|++++++.+++++++|+++++ ||.+.|+++|.++|+
T Consensus 73 ~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~ 145 (375)
T 2fnu_A 73 DRNEIITTPISFVATAN----MLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCK 145 (375)
T ss_dssp TSCEEEECSSSCTHHHH----HHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHH
T ss_pred CCCEEEECCCccHhHHH----HHHHCCCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHH
Confidence 89999999999997644 34557999999999887888999999999888998888776 999999999999999
Q ss_pred hcCcEEEEeccccCCcccCC--CCCCCCcEEEeccc--CCCCCCceeEEEEe--ccccccCCCccccCcceEeeecCCCC
Q 012718 236 DVGAKVLVDACQSVPHMVVD--VQGLDADFLVASSH--KMCGPTGIGFLFGK--SDLLSAMPPFLGGGEMISDVFLDHST 309 (458)
Q Consensus 236 ~~~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s~~--K~~gp~g~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~~~~~ 309 (458)
++|+++|+|++|+.+..+.. +...+ |+++.|++ |++|+ |+|+++++ +++++.+.+...++.. .. .
T Consensus 146 ~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~--~~----~- 216 (375)
T 2fnu_A 146 KHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGML--KK----D- 216 (375)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEE--ES----S-
T ss_pred HcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCc--cc----c-
Confidence 99999999999998876432 33333 67766666 98888 88988885 4455555443322211 00 0
Q ss_pred CCCCCCccCCCCCCHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEEe
Q 012718 310 FADPPSRFEAGTPAIG-EAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFNV 387 (458)
Q Consensus 310 ~~~~~~~~~~gt~~~~-~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 387 (458)
+.+|+.++.+.. ....+.+++......+++++.++.+++++++.+.|++++++++..+... .... .++++.+
T Consensus 217 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~ 290 (375)
T 2fnu_A 217 ----FFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLK--DKSSNHLYPILM 290 (375)
T ss_dssp ----SSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCS--SCCCCSCEEEEE
T ss_pred ----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC--CCcceEEEEEEe
Confidence 111111111100 0111222223323345788899999999999999999989988654211 1112 3556777
Q ss_pred CC--C-ChHHHHHHHhhhcCeEeccCCCCChhh-HhhcC--------------CCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 388 EN--I-HPTDIATLLDQQYGVATRSGHHCAQPL-HRYLG--------------VNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 388 ~~--~-~~~~~~~~l~~~~gi~~~~g~~~~~~~-~~~~g--------------~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+. . +..++.+.|.++ ||.++.+ |.+.. ...++ ..+++||+++.+++.+|+++++++|++
T Consensus 291 ~~~~~~~~~~l~~~L~~~-gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 291 HQKFFTCKKLILESLHKR-GILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp CGGGGGGHHHHHHHHHHT-TEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHC-CCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 63 3 577899999888 9998832 22110 00111 036899999999999999999999999
Q ss_pred HHHhhh
Q 012718 450 TVSFFN 455 (458)
Q Consensus 450 ~~~~~~ 455 (458)
++++++
T Consensus 368 ~~~~~~ 373 (375)
T 2fnu_A 368 TFESFK 373 (375)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988754
No 97
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=4.6e-32 Score=262.76 Aligned_cols=325 Identities=15% Similarity=0.076 Sum_probs=241.8
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCChh
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNAT 139 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g~t 139 (458)
+++.|+.+... +.|+.+.+++.+.+.....++.. ....++++.+++++ |. ++ ++|++|+|++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~----------~g~~~lr~~la~~l~~~~g~~~~~-~~i~~t~g~~ 92 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS----------AFEESLRAAQRGFFKRRFKIELKE-NELISTLGSR 92 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT----------TCCHHHHHHHHHHHHHHHSCCCCG-GGEEEESSSH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCH-HHEEECcCcH
Confidence 67888887665 56788888888776322222211 11224555555554 86 44 4999999999
Q ss_pred HHHHHHHHHcCCCCCCC--CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 140 EAINLVAYSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~--g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++.+++.++ .++ ||+|+++.++|++ +...++..|++++.++.++++.+++ ++++.+.+++++|+++++
T Consensus 93 ~al~~~~~~~----~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p 163 (376)
T 3ezs_A 93 EVLFNFPSFV----LFDYQNPTIAYPNPFYQI----YEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSP 163 (376)
T ss_dssp HHHHHHHHHH----TTTCSSCEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSS
T ss_pred HHHHHHHHHH----cCCCCCCEEEEecCCcHh----HHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCC
Confidence 9999999988 678 9999999999994 4566777899999999987654555 667777778899999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCC---------CCCCcEEEecccCCCCCCc--eeEE
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ---------GLDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~---------~~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
+||||.++| +++|+++|+++|+++|+|++|+.... +..+. ..+.++++.|+||.+|+.| +|++
T Consensus 164 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 243 (376)
T 3ezs_A 164 NNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEE
Confidence 999999999 66788889999999999999985332 12210 4568899999999888666 8999
Q ss_pred EEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
+.++++++.+..... ....+++.....++..+++... .+++.+++++++++++.+.|
T Consensus 244 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l 300 (376)
T 3ezs_A 244 AGDSRLLEKYKAFRA---------------------YLGYTSANAIQKASEAAWLDDR--HAEFFRNIYANNLKLARKIF 300 (376)
T ss_dssp EECHHHHHHHHHHHT---------------------TTCCCCCHHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHS
T ss_pred eeCHHHHHHHHHHHh---------------------hhcCCCChHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHh
Confidence 998887766543221 1123566666677666666422 26788889999999999998
Q ss_pred hcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhh-hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 361 LSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQ-QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
+ ++. .+ ..+.++++.++ +..++.+.|.+ + ||.+.+|..|.... ..++++||+++ .+++|
T Consensus 301 ~---~~~--~~------~~~~~~~~~~~--~~~~~~~~l~~~~-gi~v~~g~~~~~~~----~~~~~iRis~~--~~~~~ 360 (376)
T 3ezs_A 301 K---NTL--IY------PYSFYVYLPVQ--NGENFAKTLYQNE-GIITLPALYLGRNR----IGADYVRLALV--YDTPL 360 (376)
T ss_dssp T---TCC--CC------SBSSEEEEECS--CHHHHHHHHHHHH-CCBCEEGGGGCSTT----TTTTEEEEECC--SCHHH
T ss_pred c---CCC--CC------CcceEEEEECC--CHHHHHHHHHHhC-CEEEeCcHHhCCCC----CCCCeEEEEEc--CCHHH
Confidence 7 332 12 22668888887 67889999987 6 99999988665310 12689999998 49999
Q ss_pred HHHHHHHHHHHHHhh
Q 012718 440 VDEFIHALNETVSFF 454 (458)
Q Consensus 440 i~~l~~~l~~~~~~~ 454 (458)
+++++++|.+++++.
T Consensus 361 i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 361 LEKPLEIIETYRENH 375 (376)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
No 98
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=4.8e-32 Score=268.95 Aligned_cols=342 Identities=16% Similarity=0.159 Sum_probs=247.5
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCChh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNAT 139 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~t~g~t 139 (458)
++++++|..+..+ +.++.+.+++.+.+....... +.+ ++......+++++++++++ +++++ +|++|+|++
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~--~~~--~y~~~~g~~~lr~~ia~~~~~g~~~~~~-~i~~t~G~~ 142 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATRE--GYS--GYGAEQGQGALREAVASTFYGHAGRAAD-EIFISDGSK 142 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSC--CCC--CSTTTTCCHHHHHHHHHHHHTTTTCCGG-GEEEESCHH
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcccc--CCC--CCCCCCCcHHHHHHHHHHHHcCCCCCHH-HEEEccCHH
Confidence 4678999998766 578899999999887643211 111 1112234567889999998 66655 999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe----------EEEEeCCCCC--CCCHHHHHHhhcC
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN----------LKFLNLNDDE--SPDLDKLKEMLSR 207 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~----------~~~v~~~~~~--~~d~~~l~~~l~~ 207 (458)
+++..+ .++ +++||+|++++|+|++. ...++..|++ ++.+++++++ ..|++.+ +
T Consensus 143 ~al~~~-~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 208 (449)
T 3qgu_A 143 CDIARI-QMM----FGSKPTVAVQDPSYPVY----VDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----K 208 (449)
T ss_dssp HHHHHH-HHH----HCSSSCEEEEESCCTHH----HHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----C
T ss_pred HHHHHH-HHH----hCCCCEEEEcCCCChhH----HHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----C
Confidence 999998 666 57999999999999954 4555666888 9999987643 3343221 5
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCC----CCCcEEEecccCCCCCCc
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQG----LDADFLVASSHKMCGPTG 276 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~----~~~d~~~~s~~K~~gp~g 276 (458)
++++|++++++||||.+++ +++|+++|+++|+++|+|++|+... .+..+.. .+.++++.|+||.+|++|
T Consensus 209 ~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 288 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG 288 (449)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT
T ss_pred CCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc
Confidence 7899999999999999998 7788888999999999999998522 2222222 246799999999888666
Q ss_pred --eeEEEEecccccc-CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 277 --IGFLFGKSDLLSA-MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 277 --~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
+|++++++++++. ...+...+... .....++++.....++.++++......++++.+++++++
T Consensus 289 ~r~G~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 354 (449)
T 3qgu_A 289 VRLGWTVVPKALKYANGEPVHADWNRV--------------MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENA 354 (449)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHHHH--------------HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEecCHHHHhhhhhhHHHHHHHH--------------hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 8999999887653 10000000000 011123556656666656655422223678889999999
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+++.+.|+++ ++++..+.. +.++++.+++.+..++.+.|.+++||.+.+|..|... .++++||++.
T Consensus 355 ~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~------~~~~iRis~~- 420 (449)
T 3qgu_A 355 QILKTTFTEM-GFSVYGGDD------APYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPA------GEGFVRASAF- 420 (449)
T ss_dssp HHHHHHHHHT-TCCEEESSS------SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGG------GTTEEEEECC-
T ss_pred HHHHHHHHHC-CCeeeCCCC------eeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCC------CCCeEEEEec-
Confidence 9999999988 777765431 6688999886678889888876559999998866432 1689999976
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++|+++++++|++++++-
T Consensus 421 -~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 421 -GSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp -SCHHHHHHHHHHHHHHHC--
T ss_pred -CCHHHHHHHHHHHHHHHHhc
Confidence 59999999999999998653
No 99
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-32 Score=267.18 Aligned_cols=338 Identities=15% Similarity=0.150 Sum_probs=247.5
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCC-CCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASD-SGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~-~~~v~~t~g~ 138 (458)
+.+++.|..+... +.|+.+.+++.+.+.....+. + .......++++++++++ |.+. .++|++|+|+
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~----Y----~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~ 127 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQ----Y----SPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGA 127 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGS----C----CCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCC----C----CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCH
Confidence 3568889887654 467888999888775311110 0 01112346667777765 4331 2389999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC------------CCCCCHHHHHHhhc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND------------DESPDLDKLKEMLS 206 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~------------~~~~d~~~l~~~l~ 206 (458)
++|+..++.++ +++||+|+++++.|++. ...++..|++++.++.++ ++.+|+++|++.++
T Consensus 128 ~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (447)
T 3b46_A 128 NEGILSCLMGL----LNAGDEVIVFEPFFDQY----IPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT 199 (447)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred HHHHHHHHHHH----cCCCCEEEEeCCCchhH----HHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence 99999999998 68999999999999954 455677799999999764 35689999999998
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCC-----CCCCcEEEecccCCCCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ-----GLDADFLVASSHKMCGPT 275 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~-----~~~~d~~~~s~~K~~gp~ 275 (458)
+++++|++++++||||.+++ +++|+++|++||+++|+|++|+.... ...+. ..+.++++.|+||.+|++
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 279 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT 279 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc
Confidence 89999999999999999986 88999999999999999999985321 11221 236899999999998877
Q ss_pred c--eeEEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Q 012718 276 G--IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEME 351 (458)
Q Consensus 276 g--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~ 351 (458)
| +||+++ ++++++.+..... ....+.+.....++.++++..... .++++++++++
T Consensus 280 G~riG~~~~~~~~l~~~l~~~~~---------------------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~ 338 (447)
T 3b46_A 280 GWRIGWVLSLNAELLSYAAKAHT---------------------RICFASPSPLQEACANSINDALKIGYFEKMRQEYIN 338 (447)
T ss_dssp TSCCEEEECSCHHHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhhEEEEeCCHHHHHHHHHHHh---------------------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHH
Confidence 7 999999 8877665543211 112345565666666777765322 36788899999
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC----------------ChHHHHHHHhhhcCeEeccCCCCCh
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI----------------HPTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
+++++.+.|+++ ++++..+. .+.++++.++.. +..++.+.|.+++||.+.+|..|..
T Consensus 339 ~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 411 (447)
T 3b46_A 339 KFKIFTSIFDEL-GLPYTAPE------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYI 411 (447)
T ss_dssp HHHHHHHHHHHH-TCCEECCS------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSC
T ss_pred HHHHHHHHHHHC-CCeecCCC------eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCC
Confidence 999999999887 77776543 155888888642 3457888887544999998865432
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
...... .++++|++++ .+++++++++++|.+
T Consensus 412 ~~~~~~-~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 412 KEHEKA-AENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp GGGGGG-GTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CCccCC-CCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 211000 1579999998 589999999999876
No 100
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=1.9e-31 Score=258.41 Aligned_cols=296 Identities=19% Similarity=0.260 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHcC-CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 113 YELARKKVAAFIN-ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 113 ~~~~~~~la~~~g-~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..++++.++++++ .+++ +|++|+|+|+|+..++.++ +++||+|+++.++|++. ...++..|++++.++++
T Consensus 65 ~~~l~~~la~~~~~~~~~-~v~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~ 135 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPE-QILQTNGATGANLLVLYSL----IEPGDHVISLYPTYQQL----YDIPKSLGAEVDLWQIE 135 (375)
T ss_dssp CHHHHHHHHTTSSSCCGG-GEEEESHHHHHHHHHHHHH----CCTTCEEEEEESSCTHH----HHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHHHHhccCChh-hEEEcCChHHHHHHHHHHh----cCCCCEEEEeCCCchhH----HHHHHHcCCEEEEEecc
Confidence 4588999999984 5544 9999999999999999998 78999999999999954 45567779999999987
Q ss_pred CC--CCCCHHHHHHhhcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-C-C-CCCCCCcE
Q 012718 192 DD--ESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-V-D-VQGLDADF 263 (458)
Q Consensus 192 ~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-~-~-~~~~~~d~ 263 (458)
++ +.+|++++++++++++++|++++++||||.++| +++|.++|++||+++|+|++|+..... . . .+..+.++
T Consensus 136 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i 215 (375)
T 3op7_A 136 EENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGI 215 (375)
T ss_dssp GGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEE
T ss_pred ccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEE
Confidence 43 457999999999999999999999999999999 999999999999999999999864331 1 1 11234678
Q ss_pred EEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 264 LVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 264 ~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
+++|+||.+|++| +|++++++++++.+...... ...+++.....++..+++.....
T Consensus 216 ~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~- 273 (375)
T 3op7_A 216 AVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDY---------------------TMICAGVFDDLVAQLALAHYQEI- 273 (375)
T ss_dssp EEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGG---------------------TTSCCCHHHHHHHHHHHHTHHHH-
T ss_pred EEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhh---------------------hccCCCcHHHHHHHHHHhccHHH-
Confidence 9999999888666 79999988887776644321 12244555555555666654332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHh-hhcCeEeccCCCCChhhHh
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLD-QQYGVATRSGHHCAQPLHR 419 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~ 419 (458)
+++.+++++++++++.+.|++.+++.+..+.. +.++++.++ +.+..++.+.+. ++ ||.+.+|..+
T Consensus 274 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~~g~~~------ 340 (375)
T 3op7_A 274 LERNRHILEENLAILDQWIEEEPLVSYIRPAV------VSTSFVKIAVDMPMEDFCLQLLQEH-GVLLVPGNRF------ 340 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEECCCSS------SSCEEEEECCSSCHHHHHHHHHHHH-CEECEEGGGG------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEecCCC------eEEEeEEcCCCCCHHHHHHHHHHhC-CEEEeChhhh------
Confidence 67778888999999999999888898776542 345666665 346778888874 66 9999988743
Q ss_pred hcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 420 YLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 420 ~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.++++|++++ .+.+++++++++|.++++++.+
T Consensus 341 --~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 341 --ERDGYVRLGFA--CEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp --TCTTEEEECCC--SCHHHHHHHHHHHHHHHGGGC-
T ss_pred --CCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHhh
Confidence 33689999988 4569999999999999988754
No 101
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=3.2e-32 Score=269.06 Aligned_cols=344 Identities=15% Similarity=0.140 Sum_probs=244.2
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCc----chhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEE
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGI----HFLSAKATDEYELARKKVAAFIN--------ASDSGEIV 133 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~ 133 (458)
.+++.|..+......+.+.+++.+.......... |. ...++......+++++.++++++ ++++ +|+
T Consensus 38 ~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-~v~ 115 (435)
T 3piu_A 38 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKN-GESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLV 115 (435)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEET-TEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEE
T ss_pred CCeEEeccccccccHHHHHHHHHhCccccccccc-cccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-HEE
Confidence 5688998888777777666666654332110000 00 00111122334578888888887 4444 999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-HcCCeEEEEeCCCC--CCCCHHHHHHhhcC---
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-KTGANLKFLNLNDD--ESPDLDKLKEMLSR--- 207 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-~~g~~~~~v~~~~~--~~~d~~~l~~~l~~--- 207 (458)
+|+|+++|+..++.++ .++||.|+++.++|++... .+. ..|++++.++.+++ +.+|++++++.+++
T Consensus 116 ~~~gg~~a~~~~~~~l----~~~gd~vl~~~p~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 187 (435)
T 3piu_A 116 LTAGATSANETFIFCL----ADPGEAVLIPTPYYPGFDR----DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK 187 (435)
T ss_dssp EEEHHHHHHHHHHHHH----CCTTCEEEEEESCCTTHHH----HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred EcCChHHHHHHHHHHh----cCCCCeEEECCCccccHHH----HHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence 9999999999999998 6899999999999996543 233 56999999998854 45799999999876
Q ss_pred ---CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----CCC----CC---------CCCcEE
Q 012718 208 ---KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----VDV----QG---------LDADFL 264 (458)
Q Consensus 208 ---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----~~~----~~---------~~~d~~ 264 (458)
++++|++++++||||.++| +++|+++|++||+++|+|++|+.+... ..+ .+ .+.+++
T Consensus 188 ~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~ 267 (435)
T 3piu_A 188 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHV 267 (435)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEE
T ss_pred cCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEE
Confidence 7899999999999999998 478888899999999999999853221 111 11 223488
Q ss_pred EecccCCCCCCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH--H
Q 012718 265 VASSHKMCGPTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS--T 339 (458)
Q Consensus 265 ~~s~~K~~gp~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~ 339 (458)
++|+||.+|..| +|++++++ .+.+.+..... .++.+.....++.+.++... .
T Consensus 268 i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~ 324 (435)
T 3piu_A 268 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-----------------------FGLVSSQTQHLLSAMLSDKKLTK 324 (435)
T ss_dssp EEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG-----------------------GSCCCHHHHHHHHHHHHCHHHHH
T ss_pred EEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh-----------------------cCCCCHHHHHHHHHHhcChHHHH
Confidence 999999888666 89999954 44433321110 12334444455555554222 1
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
..+++.+++++++++++.+.|++. ++++..+.. +.++++.++.. +..++.+.|.+++||.+.+|..
T Consensus 325 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~------g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 397 (435)
T 3piu_A 325 NYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNA------GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSS 397 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCS------SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCe------eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcc
Confidence 135677888999999999999988 888765441 46888988642 2457888887666999998875
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|.. ..++++||+++.. +++++++++++|.++++++.+
T Consensus 398 ~~~------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~~ 434 (435)
T 3piu_A 398 CHC------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYYN 434 (435)
T ss_dssp GTC------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred cCC------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 532 1268999999864 999999999999999987653
No 102
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=100.00 E-value=2.7e-32 Score=272.15 Aligned_cols=358 Identities=14% Similarity=0.120 Sum_probs=255.3
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC---cEEEeCChhHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINASDSG---EIVFTKNATEA 141 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~---~v~~t~g~t~a 141 (458)
+.+.|..+ .+++|+.+.+++.+.+.... +++....+..+....+..+.+++.+++++|++.++ +|++++|+ ++
T Consensus 45 ~~i~L~a~-e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~a 122 (483)
T 1rv3_A 45 VGLELIAS-ENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PA 122 (483)
T ss_dssp SSEECCTT-CCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HH
T ss_pred cCeEEEcC-CCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HH
Confidence 45777544 35789999999988876532 33322112222234566677999999999998542 26666655 88
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHH----HHHHcC--CeEEEEeCC-CCCCCCHHHHHHhhc-CCceEEE
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL----VAQKTG--ANLKFLNLN-DDESPDLDKLKEMLS-RKTKLVV 213 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~----~a~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~-~~~~~v~ 213 (458)
+..++.++ +++||+|++++++|.++...+.. .++..| .+++.++++ +++.+|+++|++.++ .++++|+
T Consensus 123 n~~~~~al----l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi 198 (483)
T 1rv3_A 123 NFAVYTAL----VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 198 (483)
T ss_dssp HHHHHHHH----TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHh----cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEE
Confidence 88878887 78999999999999877543210 011123 455556556 568899999999998 7899999
Q ss_pred EecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCC---CCcEEEecccC-CCCCCceeEEEEecccccc
Q 012718 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 214 ~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 289 (458)
+ +++|++ .+.|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+|| +.||.| |+++++++...
T Consensus 199 ~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~- 274 (483)
T 1rv3_A 199 A-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS- 274 (483)
T ss_dssp E-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-
T ss_pred E-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-
Confidence 9 888888 8999999999999999999999999876654444333 68999999999 557887 99999987643
Q ss_pred CCCccccCcceEeeecCCC-CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 290 MPPFLGGGEMISDVFLDHS-TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
+. ..++.... + ... ...........|+++...++++.++++.....+++++.+++.++++++.+.|.+. |+++
T Consensus 275 ~~--~~~g~~~~--y-~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 348 (483)
T 1rv3_A 275 VD--PKTGKEIL--Y-NLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKI 348 (483)
T ss_dssp ---------CCB--C-CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hc--cccCcchh--h-HHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEe
Confidence 32 11111000 0 000 0000000112578999999999999988765568899999999999999999988 8988
Q ss_pred eCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEec----cCCCCChhhHhhcCCCCeEEEeeCCCCC----HH
Q 012718 369 YGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATR----SGHHCAQPLHRYLGVNASARASLHFYNT----KE 438 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~----~g~~~~~~~~~~~g~~~~lRis~~~~~t----~~ 438 (458)
..+... ..++++.+. +.+..++.+.|.+. ||.++ +|..|. ++ ++++|||++.+++ ++
T Consensus 349 ~~~~~~-----~~~~~v~~~~~g~~~~~~~~~L~~~-gI~v~~~~~pg~~~~------~~-~~~iRis~~~~~t~g~~~e 415 (483)
T 1rv3_A 349 VTGGSD-----NHLILVDLRSKGTDGGRAEKVLEAC-SIACNKNTCPGDKSA------LR-PSGLRLGTPALTSRGLLEK 415 (483)
T ss_dssp GGGSCS-----SSEEEEEGGGGTCCHHHHHHHHHHT-TEECEEECCSSCSCT------TS-CCEEEEECHHHHHTTCCHH
T ss_pred ccCCCC-----CceEEEeccCCCCCHHHHHHHHHhC-CcEEecCCCCCCCcC------CC-CceEEeecCCcccCCCCHH
Confidence 764311 235556654 56778888888877 99998 776432 22 5799999997777 99
Q ss_pred HHHHHHHHHHHHHHh
Q 012718 439 DVDEFIHALNETVSF 453 (458)
Q Consensus 439 di~~l~~~l~~~~~~ 453 (458)
|++++++.|.++++.
T Consensus 416 di~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 416 DFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 103
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.2e-31 Score=255.42 Aligned_cols=317 Identities=13% Similarity=0.143 Sum_probs=237.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+++++.|..+... ++++.+.+++.+.+.....++.. . .+++|+++|+++|++++ +|++|+|+|+++.
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~----------~-~~~lr~~la~~~~~~~~-~i~~t~g~~~al~ 81 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEP----------D-AGTLRQMLAKRNSVDNN-AILVTNGPTAAFY 81 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCT----------T-CHHHHHHHHHHTTCCGG-GEEEESHHHHHHH
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCC----------c-HHHHHHHHHHHhCcCHH-HEEEcCCHHHHHH
Confidence 3677888887554 67888999988876433333221 1 14799999999998765 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
+++.++ . ||+|+++.++|++ +...++..|++++.++. ++++.+++ +++++|++++++||||
T Consensus 82 ~~~~~l----~--gd~Vi~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG 143 (350)
T 3fkd_A 82 QIAQAF----R--GSRSLIAIPSFAE----YEDACRMYEHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDG 143 (350)
T ss_dssp HHHHHT----T--TCEEEEEESCCHH----HHHHHHHTTCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTC
T ss_pred HHHHHH----C--CCEEEEeCCCcHH----HHHHHHHcCCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcC
Confidence 999987 3 9999999999995 45666778999999998 65343443 6789999999999999
Q ss_pred ccccHHHHHHHHHhcC-cEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 223 SILPIEEIVHWSHDVG-AKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~-~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
.++|++++.++++..+ .++|+|++|+.... ...+...+.++++.|+||.+|++| +|++++++++++.+....
T Consensus 144 ~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 223 (350)
T 3fkd_A 144 RLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFS 223 (350)
T ss_dssp CCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhC
Confidence 9999999999988765 79999999984322 112334557799999999888655 899999888776655332
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ..+++.....++..+++....+ .+++++.. ++++++.+.|++++++++..+.
T Consensus 224 ~-----------------------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-- 276 (350)
T 3fkd_A 224 T-----------------------PWAVNALAIEAAKFILIHPAQF-TLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-- 276 (350)
T ss_dssp C-----------------------TTCSCHHHHHHHHHHHHCTTTT-CCCHHHHH-HHHHHHHHHHHHSTTEEECCCS--
T ss_pred C-----------------------CCCCCHHHHHHHHHHHhCHHHH-HHHHHHHH-HHHHHHHHHHhcCCCcEECCCC--
Confidence 1 2345555555555555432211 23344444 8889999999888899885433
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhh-hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQ-QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++++.++..+..++.+.|.+ + ||.+++|..|... .++++|||++ +.+|+++++++|+++.++
T Consensus 277 -----~~~~~~~~~~~~~~~l~~~L~~~~-gi~v~~g~~f~~~------~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 277 -----TTFFLLRLKKGTAAELKKYMLEEY-NMLIRDASNFRGL------DESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp -----SSEEEEEESSSCHHHHHHHHHHTT-CEECEECTTSTTC------CTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred -----CcEEEEECCCCCHHHHHHHHHHHC-CEEEEeCccCCCC------CCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 6788888886578899999998 6 9999999866321 2679999987 789999999999998864
No 104
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=5.8e-31 Score=263.59 Aligned_cols=381 Identities=13% Similarity=0.057 Sum_probs=259.8
Q ss_pred CCCccchhhhhcCC-CCcccccccCCCCeEEecCCCCCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHH
Q 012718 41 STDSVSLGHITRPD-FPILHQEVYGSKKLVYLDNAATSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARK 118 (458)
Q Consensus 41 ~~~~~~~~~~~r~~-f~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (458)
..+..++.+.+++. .|......+ ..|+++-..++. +..+.+.+..++ |+....+..+....+..+++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~ 120 (486)
T 1js3_A 50 PDTFEDILQDVEKIIMPGVTHWHS----PYFFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMD 120 (486)
T ss_dssp CCCHHHHHHHHHHTTGGGCCCTTS----TTBCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCC----CCceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHH
Confidence 33444555555543 344433222 235666544443 444556666654 2222333444556677778999
Q ss_pred HHHHHcCCCCC--------CcEEEeCChhHHHHHHHHHcCCCCCC-----CC---------C-EEEEcCCCCccchHHHH
Q 012718 119 KVAAFINASDS--------GEIVFTKNATEAINLVAYSWGLSNLK-----SG---------D-EVILTVAEHHSAIVPWQ 175 (458)
Q Consensus 119 ~la~~~g~~~~--------~~v~~t~g~t~a~~~~~~~l~~~~~~-----~g---------~-~vl~~~~~~~s~~~~~~ 175 (458)
.+++++|.+.. ..+++|+|+|+|+..++.+++...++ .| + .|+++.++|++ +.
T Consensus 121 ~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s----~~ 196 (486)
T 1js3_A 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS----VE 196 (486)
T ss_dssp HHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH----HH
T ss_pred HHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH----HH
Confidence 99999999842 26899999999999998775210011 03 2 38889999995 46
Q ss_pred HHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc------eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC
Q 012718 176 LVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT------KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249 (458)
Q Consensus 176 ~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~ 249 (458)
..++..|++++.+|+++++.+|+++|+++|++++ .+|++++++|+||.+.|+++|+++|+++|+++|+|++|+.
T Consensus 197 ~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~ 276 (486)
T 1js3_A 197 RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAG 276 (486)
T ss_dssp HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGG
T ss_pred HHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHH
Confidence 6677789999999998889999999999998755 3899999999999999999999999999999999999997
Q ss_pred CcccC-CCCC-----CCCcEEEecccCCCC-CCceeEEEEeccc--cccCC---CccccCcceEeeecCCCCCCCCCCcc
Q 012718 250 PHMVV-DVQG-----LDADFLVASSHKMCG-PTGIGFLFGKSDL--LSAMP---PFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 250 g~~~~-~~~~-----~~~d~~~~s~~K~~g-p~g~G~l~~~~~~--~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
+.... +... .++|++++|+||+++ |.|+|+++++++. .+.+. .+..+.........+...+ ..
T Consensus 277 ~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~-----~~ 351 (486)
T 1js3_A 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHW-----QL 351 (486)
T ss_dssp GGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGS-----SS
T ss_pred HHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCcccc-----CC
Confidence 76533 1211 258999999999654 7889999998753 34442 2222111100000000000 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC--hHHH
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH--PTDI 395 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~ 395 (458)
+.+... ..+++.++++.+...|++++.++..++++++.+.|++++++++..++. .++++|++++.+ ..++
T Consensus 352 ~~~rr~--~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~------~~~v~f~~~~~~~~~~~l 423 (486)
T 1js3_A 352 PLGRRF--RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT------LGLVCFRLKGSDGLNEAL 423 (486)
T ss_dssp CSCCCC--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC------SSEEEEEESSCHHHHHHH
T ss_pred CCCCch--hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCc------eeEEEEEecChHHHHHHH
Confidence 111111 245667777777667789999999999999999999999999876431 678999987532 4678
Q ss_pred HHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 396 ATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 396 ~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.|.++ |+.+..+. .++..+++|+++ +.+++.+||+++++.|+++++++.+
T Consensus 424 ~~~L~~~-g~~~~~~~--------~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 424 LERINSA-RKIHLVPC--------RLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHH-TSCBCEEE--------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc-CCEEEEEE--------EECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8888888 76543221 123357899996 5778999999999999999876543
No 105
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=100.00 E-value=7.7e-32 Score=259.10 Aligned_cols=329 Identities=15% Similarity=0.089 Sum_probs=239.8
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+++++|+++..+++++.+.+++.+.... + ...+......+++++.+++++| + +.++++|+|+|+|+.++
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG-----Q----AGPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS-----C----CCSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC-----c----ccccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHH
Confidence 5678999888888899999998876311 0 1112234567789999999999 4 33699999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCCCCCCHHHHHH-hhcC-------CceEEEEe
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKE-MLSR-------KTKLVVIH 215 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~~~~d~~~l~~-~l~~-------~~~~v~~~ 215 (458)
+.++ .++||+|+++.++|.+.... ..+... |++++.++.+ ++.+|++++++ .+++ ++++|+++
T Consensus 76 l~~~----~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~ 148 (356)
T 1v72_A 76 LSAM----TPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSIT 148 (356)
T ss_dssp HHTS----CCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred HHHh----cCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEE
Confidence 9887 57899999999998864322 013445 8999999875 57789999999 8876 67999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC----CCCcEEEecccCCCCCCceeEEEEecc
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG----LDADFLVASSHKMCGPTGIGFLFGKSD 285 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~~gp~g~G~l~~~~~ 285 (458)
+++| ||.++| +++|.++|++||+++|+|++|+.+.. ...... .+.|+++.|+||+.+|.|+|+++.+++
T Consensus 149 ~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~ 227 (356)
T 1v72_A 149 QATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTS 227 (356)
T ss_dssp SSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGG
T ss_pred cCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHH
Confidence 9876 999666 78999999999999999999974211 111111 257899999999855777789999888
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+++.+...... .|+.......+...+++.+.+..+.++.++.+++++++.+.|+++++
T Consensus 228 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g 285 (356)
T 1v72_A 228 LATEMSYRRKR----------------------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGG 285 (356)
T ss_dssp GHHHHHHHHHH----------------------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHhhHHHHhhc----------------------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 77655422110 01111111223333444444323556778888999999999998889
Q ss_pred EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
+++..+.. ++++++.++ .++.+.|.++ ||.+++|. ++ ++++|++++..++++|++++++
T Consensus 286 ~~~~~~~~------~~~~~~~~~----~~~~~~l~~~-gi~v~~g~---------~~-~~~iRi~~~~~~~~~~i~~~~~ 344 (356)
T 1v72_A 286 VEVLGGTE------ANILFCRLD----SAMIDALLKA-GFGFYHDR---------WG-PNVVRFVTSFATTAEDVDHLLN 344 (356)
T ss_dssp EEEESCCC------SSEEEEEEC----HHHHHHHHHT-TCBCBCSS---------SS-TTEEEEECCTTCCHHHHHHHHH
T ss_pred cEEccCCC------ccEEEEEcC----HHHHHHHHhc-CeEEeccc---------cC-CCeEEEEecCCCCHHHHHHHHH
Confidence 98875532 668888875 4788999888 99998875 12 5789999998899999999999
Q ss_pred HHHHHHHhhhc
Q 012718 446 ALNETVSFFNV 456 (458)
Q Consensus 446 ~l~~~~~~~~~ 456 (458)
+|++++++..+
T Consensus 345 ~l~~~l~~~~~ 355 (356)
T 1v72_A 345 QVRLAADRTQE 355 (356)
T ss_dssp HHHHTC-----
T ss_pred HHHHHHHhhcc
Confidence 99998876543
No 106
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=3.8e-32 Score=266.45 Aligned_cols=337 Identities=15% Similarity=0.108 Sum_probs=245.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g~ 138 (458)
.++++|+.+... ++|+.+.+++.+.+....... +.......++++.++++++ .++.++|++|+|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~--------y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~ 94 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ--------YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGA 94 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGS--------CCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccC--------CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCc
Confidence 678999999877 678999999998876421100 0001122356666776665 4442499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-----------CCCCCHHHHHHhhcC
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-----------DESPDLDKLKEMLSR 207 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-----------~~~~d~~~l~~~l~~ 207 (458)
++++..++.++ +++||+|+++.++|++. ...++..|++++.+++++ ++.+|++++++.+++
T Consensus 95 ~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~ 166 (410)
T 3e2y_A 95 YGSLFNSIQGL----VDPGDEVIIMVPFYDCY----EPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS 166 (410)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCchhh----HHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC
Confidence 99999999998 68999999999999954 555667799999998862 345799999999988
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCC----CCCCcEEEecccCCCCCCc
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQ----GLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~----~~~~d~~~~s~~K~~gp~g 276 (458)
++++|++++++||||.+++ +++|+++|+++|+++|+|++|+... .+.++. ..+.++++.|+||.+|++|
T Consensus 167 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G 246 (410)
T 3e2y_A 167 KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG 246 (410)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC
Confidence 9999999999999999975 8899999999999999999998422 111221 2245689999999888667
Q ss_pred --eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH------HHhCHHHHHHH
Q 012718 277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL------STIGMQKIHAY 348 (458)
Q Consensus 277 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~------~~~g~~~~~~~ 348 (458)
+|++++++++++.+..... ....+++.....++..+++.. ....++++.++
T Consensus 247 ~r~G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 3e2y_A 247 WKLGWSIGPAHLIKHLQTVQQ---------------------NSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKE 305 (410)
T ss_dssp GCCEEEECCHHHHHHHHHHHH---------------------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHH
T ss_pred ceEEEEEECHHHHHHHHHHHH---------------------hhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHH
Confidence 8999999887766543221 112345655666666666531 12236788899
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC----C--------hHHHHHHHhhhcCeEeccCCCCChh
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI----H--------PTDIATLLDQQYGVATRSGHHCAQP 416 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~--------~~~~~~~l~~~~gi~~~~g~~~~~~ 416 (458)
++++++++.+.|+++ ++++..+.. +.++++.+... + ..++.+.+.+++||.+.+|..|...
T Consensus 306 ~~~~~~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~ 378 (410)
T 3e2y_A 306 LEVKRDRMVRLLNSV-GLKPIVPDG------GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDS 378 (410)
T ss_dssp HHHHHHHHHHHHHTT-TCEEEBCSB------SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCT
T ss_pred HHHHHHHHHHHHHHC-CCeecCCCc------cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCC
Confidence 999999999999998 888765541 55778777531 1 1367776544349999998866432
Q ss_pred hHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 417 LHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 417 ~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.... ...+++||+++ .+++++++++++|++
T Consensus 379 ~~~~-~~~~~iRis~~--~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 379 KSKP-HFEKLVRFCFI--KKDSTLDAAEEIFRA 408 (410)
T ss_dssp TTHH-HHTTEEEEECC--CCHHHHHHHHHHHHT
T ss_pred CCCC-CCCCEEEEEEc--CCHHHHHHHHHHHHh
Confidence 1000 01589999988 499999999999875
No 107
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=1.3e-31 Score=264.31 Aligned_cols=334 Identities=13% Similarity=0.143 Sum_probs=241.4
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHH------------HHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--------
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYY------------EAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-------- 125 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-------- 125 (458)
.+++.|+.+.....++.+.+++.+.. .....++. .....+++++++++++
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~~la~~~~~~~g~~~~ 105 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQD----------YHGLPEFRKAIAKFMEKTRGGRVR 105 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCC----------TTCCHHHHHHHHHHHHHHTTTCSC
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCC----------CCCcHHHHHHHHHHHHHhcCCCCC
Confidence 56889988777766777777776431 11111111 1124477888888876
Q ss_pred CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHH
Q 012718 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKE 203 (458)
Q Consensus 126 ~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~ 203 (458)
++++ +|++|+|+++++..++.++ .++||+|++++++|++... .++...|++++.++.++ ++.+|++++++
T Consensus 106 ~~~~-~i~~~~G~~~ai~~~~~~~----~~~gd~Vl~~~p~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 177 (428)
T 1iay_A 106 FDPE-RVVMAGGATGANETIIFCL----ADPGDAFLVPSPYYPAFNR---DLRWRTGVQLIPIHCESSNNFKITSKAVKE 177 (428)
T ss_dssp CCTT-SCEEEEHHHHHHHHHHHHH----CCTTCEEEEESSCCTTHHH---HTTTTTCCEEEEECCCTTTTTCCCHHHHHH
T ss_pred CChh-hEEEccChHHHHHHHHHHh----CCCCCeEEEccCCCcchHH---HHHHhcCCEEEEeecCCccCCcCCHHHHHH
Confidence 5554 8999999999999999988 6799999999999996432 23345699999999874 34679999999
Q ss_pred hhcC------CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---c-CC---CCC------CCC
Q 012718 204 MLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V-VD---VQG------LDA 261 (458)
Q Consensus 204 ~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~-~~---~~~------~~~ 261 (458)
.+++ ++++|++++++||||.++| +++|+++|+++|+++|+|++|+.... + .+ +.. +++
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCC
Confidence 8863 6899999999999999999 89999999999999999999985321 1 11 111 124
Q ss_pred c--EEEecccCCCCCCc--eeEEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 262 D--FLVASSHKMCGPTG--IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 262 d--~~~~s~~K~~gp~g--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
| +++.|+||.+|.+| +|++++ ++++++.+..... ..+.+.....++..+++.
T Consensus 258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~a~~~~l~~ 314 (428)
T 1iay_A 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS-----------------------FGLVSTQTQYFLAAMLSD 314 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT-----------------------TSCCCHHHHHHHHHHTTC
T ss_pred CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHh-----------------------cccCCHHHHHHHHHHhcC
Confidence 6 88999999998777 799999 4556554432110 123455555555555543
Q ss_pred HH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEe
Q 012718 337 LS--TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVAT 407 (458)
Q Consensus 337 ~~--~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~ 407 (458)
.. +..++++.++++++++++.+.|+++ ++++..+. .+.++++++++. +..++.+.|.+++||.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 387 (428)
T 1iay_A 315 EKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN------AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNV 387 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS------SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC------eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEE
Confidence 21 1135778889999999999999887 77654432 266888988642 23478888876569999
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++|..|... .++++||+++ ..+++|+++++++|++++++.
T Consensus 388 ~~~~~~~~~------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 388 SPGSSFECQ------EPGWFRVCFA-NMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEGGGGTCS------SSSEEEEECS-SSCHHHHHHHHHHHHHHHHTT
T ss_pred eCchhhCCC------CCCEEEEEEe-cCCHHHHHHHHHHHHHHHhcc
Confidence 987644221 1578999999 579999999999999998754
No 108
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=1.1e-30 Score=255.95 Aligned_cols=334 Identities=16% Similarity=0.190 Sum_probs=250.0
Q ss_pred CCCeEEecCCCCC--CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
++.+++|..+... +.++.+.+++.+.+..+..... .+.......+..+++++.+++++|.+ ..+++++|++++
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~--~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~ 132 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLF--MSASFLQNDYDKPMIEKRLAKFTGFD---ECLLSQSGWNAN 132 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCC--SBGGGGCSTTTSCHHHHHHHHHHTCS---EEEEESCHHHHH
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCC--ccccccCCcHHHHHHHHHHHHHhCCC---eEEEecchHHHH
Confidence 3566777655422 3578899999998876432211 11111222344567889999999987 456667778999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
..++.++ +++||.|+++++.|++... .++..|++++.++. .|++++++.+++ ++++|++++++|||
T Consensus 133 ~~~l~~~----~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~npt 199 (409)
T 3kki_A 133 VGLLQTI----CQPNTNVYIDFFAHMSLWE----GARYANAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTL 199 (409)
T ss_dssp HHHHHHH----CCTTCEEEEETTSCHHHHH----HHHHTTCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTT
T ss_pred HHHHHHh----cCCCCEEEECCCcCHHHHH----HHHHcCCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCC
Confidence 9999988 7899999999999996543 34556999988875 389999999976 58999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCC
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP 292 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~ 292 (458)
|.+.|+++|.++|+++|+++|+|++|+.+... .++ ..++|+++.|+||.+|+. .|+++.++++++.+..
T Consensus 200 G~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~-gg~v~~~~~~~~~~~~ 277 (409)
T 3kki_A 200 GTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYR-AGAIWCNNEVNRCVPF 277 (409)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSS-CEEEEESSSGGGTHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCC-ceEEEECHHHHHHHHH
Confidence 99999999999999999999999999865431 112 124799999999988876 4999999988766543
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
....+. + .++.+...++++.++++.+.+. ++++++++++++++.+.|+++ ++++..
T Consensus 278 ~~~~~~------------------~-~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~-- 333 (409)
T 3kki_A 278 ISYPAI------------------F-SSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQL-GLTIRS-- 333 (409)
T ss_dssp HCHHHH------------------H-SBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTT-TCCCCC--
T ss_pred hCcCcc------------------c-cCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCccCC--
Confidence 211110 1 2345666777777888887764 688889999999999999988 665441
Q ss_pred CCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.++++++.++.. +..++.+.|.++ ||.+.+..++..+ ...+++|++++.+++++|+++++++|++++
T Consensus 334 ------~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~-----~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 334 ------ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATS-----KNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp ------SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSC-----TTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ------CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcC-----CCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 267888887642 355788999988 9998775432211 125799999998899999999999999998
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
++.
T Consensus 402 ~~~ 404 (409)
T 3kki_A 402 NYG 404 (409)
T ss_dssp HHS
T ss_pred hcC
Confidence 764
No 109
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.98 E-value=1.2e-30 Score=260.20 Aligned_cols=359 Identities=17% Similarity=0.122 Sum_probs=250.2
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
..+++|+ +.++...+.+.+++.+.+.. .++. .....+.+..+..+++++.+++++|.+. .+++++|+++|+..+
T Consensus 66 ~~~~~lg-~~~~~~~p~v~~~~~~~~~~--~~~~-~~~~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~a 139 (474)
T 1wyu_B 66 TTFYPLG-SCTMKYNPKLHEEAARLFAD--LHPY-QDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTG 139 (474)
T ss_dssp TSCCCBT-TTCCCCCCHHHHHHHHTTSS--CCTT-SCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHH
T ss_pred cCccccc-cccccCCHHHHHHHHHHHHh--cCCC-CchhhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHH
Confidence 4568888 44444445566665554211 1221 1111345667888899999999999873 567889999999986
Q ss_pred HHHcCCCCCCCCC-----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCc
Q 012718 146 AYSWGLSNLKSGD-----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM 220 (458)
Q Consensus 146 ~~~l~~~~~~~g~-----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~ 220 (458)
+.++.....++|| +|+++.+.|++. ...++..|++++.++.++++.+|+++|++++++++++|+++++ |+
T Consensus 140 l~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~----~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~ 214 (474)
T 1wyu_B 140 ILIIRAYHEDRGEGRTRRVVLVPDSAHGSN----PATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NT 214 (474)
T ss_dssp HHHHHHHHHHTTCTTTCCEEEEETTSCTHH----HHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CT
T ss_pred HHHHHHHHHhcCCccCCCEEEEeCCcChhh----HHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CC
Confidence 6554100123565 999999999865 3446677999999999888999999999999999999999997 68
Q ss_pred Cccc-ccHHHHHHHHHhcCcEEEEeccccCCcc-cCCCCCCCCcEEEecccCCCC-CC-----ceeEEEEeccccccCC-
Q 012718 221 LASI-LPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCG-PT-----GIGFLFGKSDLLSAMP- 291 (458)
Q Consensus 221 tG~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~~g-p~-----g~G~l~~~~~~~~~l~- 291 (458)
+|.+ .++++|+++|+++|+++|+|++|+.+.. ..+...+++|++++|+||+|+ |. |+|++++++++++.+.
T Consensus 215 ~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~ 294 (474)
T 1wyu_B 215 LGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPV 294 (474)
T ss_dssp TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCS
T ss_pred CcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCC
Confidence 9998 6899999999999999999999986554 233334579999999999665 53 5999999999888776
Q ss_pred Cccc-cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 292 PFLG-GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 292 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
++.. ++.. ..... .......++..++.+...+.+....+..+...++++..++..++++++.+.|+++ ++++..
T Consensus 295 ~~~~~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 369 (474)
T 1wyu_B 295 PLVERGEEG---FYLDF-DRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPY 369 (474)
T ss_dssp CEEEECSSC---EEEEC-CCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSS
T ss_pred CeeeccCCe---eEecc-cCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecC
Confidence 3321 1110 00110 1111123444455666544544455544444457777899999999999999987 777633
Q ss_pred CCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+... ...+++.++ +.+..++.+.|.++ ||.+. +..+. ....+++||+++.+++.+|+++++++|++
T Consensus 370 ~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~~-~~~~~------~~~~~~lRis~~~~~t~e~id~~~~~L~~ 436 (474)
T 1wyu_B 370 DGPS-----MHEFVAQPPEGFRALDLAKGLLEL-GFHPP-TVYFP------LIVKEALMVEPTETEAKETLEAFAEAMGA 436 (474)
T ss_dssp CSSC-----CSCEEEBCSTTCCHHHHHHHHHHT-TCCCC-EESCS------TTSTTCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCc-----ceEEEEEcCCCCCHHHHHHHHHHC-Ccccc-ccccc------cccCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 2211 111344443 45678999999988 99853 32221 01257899999988899999999999998
Q ss_pred HHHh
Q 012718 450 TVSF 453 (458)
Q Consensus 450 ~~~~ 453 (458)
++++
T Consensus 437 ~~~~ 440 (474)
T 1wyu_B 437 LLKK 440 (474)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 8754
No 110
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.98 E-value=3.1e-31 Score=259.09 Aligned_cols=338 Identities=16% Similarity=0.136 Sum_probs=236.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH--cC-CCCCCcEEEeCChhH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF--IN-ASDSGEIVFTKNATE 140 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~g-~~~~~~v~~t~g~t~ 140 (458)
++++++|+.+..+ ++++.+.+++.+.+....... +.+. +.......++|++++++ .| ++++ +|++|+|+++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~~--y~~~~g~~~lr~~la~~l~~g~~~~~-~v~~~~G~~~ 106 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSSPT--TCRG--YGPDFGLPALRQKLSEDFYRGFVDAK-EIFISDGAKV 106 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSS--CCCC--CCCTTCCHHHHHHHHHTTSTTSSCGG-GEEEESCHHH
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcccccc--cccC--CCCCCCCHHHHHHHHHHHHcCCCCHH-HEEEccChHH
Confidence 3678999998776 678899999999887642211 1111 11123355899999999 46 5554 9999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-EEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
++..++..+ ++||+|+++.|+|++. ...++..|++ ++.++.++++.++.+ +++ + +++++|++++++|
T Consensus 107 al~~~~~~~-----~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~-~~~~~v~l~~p~n 174 (400)
T 3asa_A 107 DLFRLLSFF-----GPNQTVAIQDPSYPAY----LDIARLTGAKEIIALPCLQENAFFPE-FPE-D-THIDILCLCSPNN 174 (400)
T ss_dssp HHHHHHHHH-----CSSCEEEEEESCCHHH----HHHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-CCCSEEEEESSCT
T ss_pred HHHHHHHHc-----CCCCEEEECCCCcHHH----HHHHHHcCCcceEecccchhcCcccC-hhh-c-cCccEEEEeCCCC
Confidence 999976543 6899999999999954 4556677998 999998754322221 222 1 5789999999999
Q ss_pred cCccccc---HHHHHHHHHhcCcEEEEecccc-C---CcccCCCCCC----CCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 220 MLASILP---IEEIVHWSHDVGAKVLVDACQS-V---PHMVVDVQGL----DADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 220 ~tG~~~~---l~~i~~l~~~~~~~vivD~a~~-~---g~~~~~~~~~----~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
|||.++| +++|+++|+++|+++|+|++|+ + +..+..+..+ +.+++++|+||.+|++| +|++++++++
T Consensus 175 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~ 254 (400)
T 3asa_A 175 PTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQEL 254 (400)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTC
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhh
Confidence 9999998 5678899999999999999998 3 2222333222 24588999999998777 8999998877
Q ss_pred cccCC----CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 287 LSAMP----PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 287 ~~~l~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
.+... ..... ......++.+.....++..+++.. .+++++++++++++++.+.|++
T Consensus 255 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~ 314 (400)
T 3asa_A 255 TYADGHFVIQDWER-----------------FLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLA 314 (400)
T ss_dssp BCTTSCBHHHHHHH-----------------HHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHH-----------------HhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 42211 00000 000112456666666665555432 4678889999999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEE-eC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFN-VE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~-~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
. ++++..+. .+.++++. ++ +.+..++.+.|.+++||.+.+|..|... .++++||++ +.+++++
T Consensus 315 ~-g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~------~~~~iRis~--~~~~e~i 379 (400)
T 3asa_A 315 T-GFEVFGGE------HAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRS------GSGFVRFSS--LGKREDI 379 (400)
T ss_dssp T-TCEEEECS------SSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGG------GTTCEEEEC--CSCHHHH
T ss_pred C-CCeeeCCC------CceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCC------CCCEEEEEe--eCCHHHH
Confidence 7 78876543 15688998 76 3455678887765449999998766421 257899995 4799999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|++++++.
T Consensus 380 ~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 380 LAACERLQMAPALQ 393 (400)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
No 111
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.98 E-value=1.1e-31 Score=264.77 Aligned_cols=293 Identities=14% Similarity=0.156 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHc-----CCCCCCc---EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-cCC
Q 012718 113 YELARKKVAAFI-----NASDSGE---IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-TGA 183 (458)
Q Consensus 113 ~~~~~~~la~~~-----g~~~~~~---v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-~g~ 183 (458)
..++++.+++++ +++++ + |++|+|+++|+.+++.++ +++||+|+++.++|++ +...++. .|+
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~~g~ 160 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSID-NMSRPIVTNALTHGLSLVGDLF----VNQDDTILLPEHNWGN----YKLVFNTRNGA 160 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGG-GBCCCEEESHHHHHHHHHHHHH----CCTTCEEEEESSCCTH----HHHHHTTTTCC
T ss_pred CHHHHHHHHHHHhccCcccCCC-ccceEEEcCCchHHHHHHHHHH----hCCCCEEEEcCCcCcc----HHHHHHHhcCC
Confidence 457888999988 77765 7 999999999999999998 6899999999999995 4555666 799
Q ss_pred eEEEEeCCC-CCCCCHHHHHHhhcC---CceEEEEecccCcCccccc---HHHHHHHHHh-----cCcEEEEeccccCCc
Q 012718 184 NLKFLNLND-DESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP---IEEIVHWSHD-----VGAKVLVDACQSVPH 251 (458)
Q Consensus 184 ~~~~v~~~~-~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~-----~~~~vivD~a~~~g~ 251 (458)
+++.++.++ ++.+|++++++.+++ +++++++++|+||||.++| +++|.++|++ +|+++|+|++|+...
T Consensus 161 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~ 240 (430)
T 2x5f_A 161 NLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLF 240 (430)
T ss_dssp EEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCB
T ss_pred eEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccccc
Confidence 999999875 457899999999977 7899999999999999999 8899999999 999999999998432
Q ss_pred c------cC--CCCC-CCC---cEEEecccCCCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCC
Q 012718 252 M------VV--DVQG-LDA---DFLVASSHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPP 314 (458)
Q Consensus 252 ~------~~--~~~~-~~~---d~~~~s~~K~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 314 (458)
. ++ ++.. .+. +++++|+||.+|++| +|++++ ++++++.+.......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~----------------- 303 (430)
T 2x5f_A 241 YEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL----------------- 303 (430)
T ss_dssp CSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH-----------------
T ss_pred CCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhh-----------------
Confidence 1 11 2222 345 788999999888667 799999 887766654322110
Q ss_pred CccCCCCCCHHHHHHHHHHHH----HHHHhCHHHHHHHHHHHHHHHHHHHh----cCCCEEEeCCCCCCcCccccEEEEE
Q 012718 315 SRFEAGTPAIGEAIGLGAAID----YLSTIGMQKIHAYEMELAKYLYENLL----SIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 315 ~~~~~gt~~~~~~~~l~~al~----~~~~~g~~~~~~~~~~l~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
.+....+++.....++..+++ +... +++++++++++++++.+.|+ +. ++++..+. .+.++++.
T Consensus 304 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~------~g~~~~~~ 374 (430)
T 2x5f_A 304 IRSNISSGPLPTQSAVKHVLKNNKQFDKE--IEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFN------SGYFMAIK 374 (430)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHSCHHHHHH--HHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCC------BSSEEEEE
T ss_pred hhcccCCCChHHHHHHHHHHccChHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCC------ceEEEEeC
Confidence 001234567777777777777 3332 56688999999999999998 55 78876543 13468888
Q ss_pred eCCCChHHHHHHHhh-hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 387 VENIHPTDIATLLDQ-QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~-~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+++.+..++.+.|.+ + ||.+.+|. ++++||+++. .+++|+++++++|+++++++
T Consensus 375 ~~~~~~~~~~~~l~~~~-gi~v~~g~------------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 375 VHDVDPEALRKHLIDKY-SIGVIALN------------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp ESSSCHHHHHHHHHHHH-CEECEECS------------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC-CEEEecCC------------CCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 886678889999987 6 99998872 6789999995 58899999999999998765
No 112
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.98 E-value=1.7e-31 Score=254.16 Aligned_cols=296 Identities=19% Similarity=0.224 Sum_probs=212.0
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC
Q 012718 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE 194 (458)
Q Consensus 115 ~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~ 194 (458)
++++.+++++|.+ +.+++++|++|+..++.++ +++||+|+++.++|++....+..+++..|++++.++..
T Consensus 2 ~l~~~la~~~g~~---~~i~~~sG~~a~~~~~~~~----~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 71 (331)
T 1pff_A 2 ALEGKIAKLEHAE---ACAATASGMGAIAASVWTF----LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA--- 71 (331)
T ss_dssp HHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred hHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh----cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCC---
Confidence 5789999999986 4455555699999999987 67899999999999987766665566789999999863
Q ss_pred CCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh-cCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC
Q 012718 195 SPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 195 ~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g 273 (458)
|++++++.+++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.|....++ +.+.|++++|+||++|
T Consensus 72 --d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~ 148 (331)
T 1pff_A 72 --VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYIN 148 (331)
T ss_dssp --STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTS
T ss_pred --CHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccC
Confidence 8889999999899999999999999999999999999999 99999999999977653333 4679999999999666
Q ss_pred -CCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 274 -PTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 274 -p~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
|.+ +|++++++ ++++.+.+...++ ..++.+.....++..+++.+... ++...+..
T Consensus 149 ~~~~r~~G~~~~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 207 (331)
T 1pff_A 149 GHTDVVAGLVCSRADIIAKVKSQGIKDI--------------------TGAIISPHDAWLITRGTLTLDMR-VKRAAENA 207 (331)
T ss_dssp SSSSCCCEEEEECHHHHHHHHHTCCCCC--------------------CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhh--------------------cCCCCCHHHHHHHHcCcchHHHH-HHHHHHHH
Confidence 555 79999998 7776665443320 11345554444444455543321 23333333
Q ss_pred HHHHHHHHHH----------HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccC---------
Q 012718 350 MELAKYLYEN----------LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG--------- 410 (458)
Q Consensus 350 ~~l~~~l~~~----------L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g--------- 410 (458)
..+.+++.+. |.+++++++..+.. ...+++++|.+. +..++.+.+.+. ||.++..
T Consensus 208 ~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~l~~~-gI~~~~~s~g~~~sl~ 281 (331)
T 1pff_A 208 QKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM---KMFGSMIAFDVD--GLEKAKKVLDNC-HVVSLAVSLGGPESLI 281 (331)
T ss_dssp HHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC---SSCCSEEEEECS--SHHHHHHHHHTC-SSSEECSSCCSSSCEE
T ss_pred HHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC---CCCceEEEEEEC--CHHHHHHHHHhC-CCceeccCCCCcceee
Confidence 3333333321 11112222221110 124678999887 567788888877 9977654
Q ss_pred CCCChhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 411 HHCAQPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 411 ~~~~~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.+|..+.+ ..+|. ++.+|+|++.+++++|++++++.|+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 282 QHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp ECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 24433322 23454 589999999999999999999998754
No 113
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.98 E-value=5.4e-30 Score=257.08 Aligned_cols=358 Identities=15% Similarity=0.117 Sum_probs=251.7
Q ss_pred EEecCCCCCCCcHHHH-HHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVL-KALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVA 146 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~ 146 (458)
-||++-..+..++.+. +.+.+.+ +.+. ..+..+....+..+.+.+.+++++|.+.. ..++||+|+|+|+..++
T Consensus 97 ~f~~~~~~~~~~~~~~~e~l~~~~---~~~~--~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al 171 (511)
T 3vp6_A 97 RFFNQLSTGLDIIGLAGEWLTSTA---NTNM--FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSI 171 (511)
T ss_dssp TEESSSSCCCCHHHHHHHHHHHHH---CCCS--SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHH
T ss_pred CceEeecCCCcHHHHHHHHHHHHh---ccCC--CCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHH
Confidence 3777765555444443 4444433 2222 23344556677788899999999999842 38999999999999988
Q ss_pred HHcCCCC----------CCCCCEEEEcCCCCccchHHHHHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhcCC-----
Q 012718 147 YSWGLSN----------LKSGDEVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSRK----- 208 (458)
Q Consensus 147 ~~l~~~~----------~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~----- 208 (458)
.++.... ..+++.|+++...|++. ...++..|+ +++.++.++++.+|+++|+++|+++
T Consensus 172 ~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~----~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~ 247 (511)
T 3vp6_A 172 MAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI----KKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGY 247 (511)
T ss_dssp HHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH----HHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH----HHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCC
Confidence 7763100 01567899999999964 556666787 8999999988999999999999764
Q ss_pred -ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-----CCC-CCCcEEEecccCCC-CCCceeEE
Q 012718 209 -TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-----VQG-LDADFLVASSHKMC-GPTGIGFL 280 (458)
Q Consensus 209 -~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-----~~~-~~~d~~~~s~~K~~-gp~g~G~l 280 (458)
+++|++++++|++|.+.|+++|+++|++||+++|+|++|+.+....+ +.. .++|++++++||++ +|.|+|++
T Consensus 248 ~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l 327 (511)
T 3vp6_A 248 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 327 (511)
T ss_dssp EEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEE
Confidence 88999999999999999999999999999999999999998776221 211 24799999999954 58889999
Q ss_pred EEeccc-cccC----CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 281 FGKSDL-LSAM----PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 281 ~~~~~~-~~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
+++++. ++.. ..++.+...... ..+......++.+.+ ...+++..+++.+...|++++.++..+++++
T Consensus 328 ~~~~~~~~~~~~~~~~~yl~~~~~~~~-----~~~~~~~~~~~~~r~--~~al~~~~al~~~g~~gl~~~~~~~~~~a~~ 400 (511)
T 3vp6_A 328 LVKEKGILQGCNQMHASYLFQQDKHYD-----VSYDTGDKAIQCGRH--VDIFKFWLMWKAKGTVGFENQINKCLELAEY 400 (511)
T ss_dssp EESSTTHHHHHHCCCCTTTCCSSCSSC-----GGGCCGGGSSCSSCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHhccCCccccCcccccc-----cccCccCCCCCCCCc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 998753 3221 122211110000 000000111222222 2456777888888888899999999999999
Q ss_pred HHHHHhcCCCEEEeCC-CCCCcCccccEEEEEeCCCC-----------------hHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 356 LYENLLSIPNIRIYGP-KPSEHVQRAALCSFNVENIH-----------------PTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
+.+.|++.|++++..+ .+. .++++|++.... ..++.+.|.++ |+.+.... +
T Consensus 401 l~~~L~~~pg~~l~~~~~p~-----~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~----~- 469 (511)
T 3vp6_A 401 LYAKIKNREEFEMVFNGEPE-----HTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQ----P- 469 (511)
T ss_dssp HHHHHHSCTTEEESSSSCCS-----SSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEE----E-
T ss_pred HHHHHhcCCCEEEEecCCCC-----eEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEE----E-
Confidence 9999999999999874 222 677888763211 23588888888 76443210 0
Q ss_pred HhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 418 HRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 418 ~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..+..+++|+++ ++.++.+||+++++.|+++-+.+.
T Consensus 470 --~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 470 --QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp --ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred --eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 001134799999 688999999999999998876553
No 114
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.98 E-value=1.4e-31 Score=265.21 Aligned_cols=354 Identities=12% Similarity=0.099 Sum_probs=238.9
Q ss_pred CCeE-EecCCCCCCCcHHHHHHHHHHHHHhccC-------CCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCc
Q 012718 66 KKLV-YLDNAATSQKPIAVLKALQNYYEAYNSN-------VHRGIHFLSAKATDEYELARKKVAAFI------NASDSGE 131 (458)
Q Consensus 66 ~~~i-~l~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~ 131 (458)
++++ +|.++.+.. ++.+.+++.+++.+...+ +....+..++......+++|+++|+++ +++++ +
T Consensus 31 ~~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~ 108 (444)
T 3if2_A 31 DQPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE-N 108 (444)
T ss_dssp SSCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-G
T ss_pred chhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-H
Confidence 5678 998887665 555666666666654333 210111222333344567888888887 45554 9
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCC--------------EEEEc-CCCCccchHHHH--HHHHHcCCeEEEEeCCC-C
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGD--------------EVILT-VAEHHSAIVPWQ--LVAQKTGANLKFLNLND-D 193 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~--------------~vl~~-~~~~~s~~~~~~--~~a~~~g~~~~~v~~~~-~ 193 (458)
|++|+|+|+|+++++.++ +++|| +|+++ .|+|++...... ......|..++.+++++ +
T Consensus 109 i~~t~G~t~al~~~~~~l----~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLF----GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEE 184 (444)
T ss_dssp EEEESSHHHHHHHHHHHS----SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEE
T ss_pred EEEecCcHHHHHHHHHHH----hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccccccc
Confidence 999999999999999988 57777 78776 888886532110 01223477888888775 2
Q ss_pred C----CCCHHHHHHh---hcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCC
Q 012718 194 E----SPDLDKLKEM---LSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQG 258 (458)
Q Consensus 194 ~----~~d~~~l~~~---l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~ 258 (458)
| .+|++.|+++ +.+++++|++++++||||.++| +++|+++|+++|+++|+|++|+.+.. ......
T Consensus 185 g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 264 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNW 264 (444)
T ss_dssp EEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCC
T ss_pred CccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccC
Confidence 3 6899999998 6778999999999999999999 88899999999999999999984322 111223
Q ss_pred CCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 259 LDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 259 ~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
.+.+++++|+||+ +++| +|+++.++++++.+.......+ .+++.....++...++.
T Consensus 265 ~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~l~~ 322 (444)
T 3if2_A 265 DNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVN---------------------LAPTRFGAAIATPLVAN 322 (444)
T ss_dssp CTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHH---------------------SSCCCHHHHHHHHHHHT
T ss_pred CCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhcc---------------------CCCChHHHHHHHHHHHc
Confidence 4678999999996 5444 8999998887766653322111 12233333333333332
Q ss_pred HHHh-CHHH-HHHHHHHHHHHHHHHHhc-CC--CEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEecc
Q 012718 337 LSTI-GMQK-IHAYEMELAKYLYENLLS-IP--NIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRS 409 (458)
Q Consensus 337 ~~~~-g~~~-~~~~~~~l~~~l~~~L~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~ 409 (458)
.... ...+ ++++++++++.+.+.|.+ ++ ++.+..+. .+.++++.++ +.+..++.+.|.++ ||.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~ 395 (444)
T 3if2_A 323 DRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE------GAIFLWLWFKDLPISTLDLYERLKAK-GTLIVP 395 (444)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC------BSSEEEEEETTCSSCHHHHHHHHHHT-TEECEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC------ccEEEEEEcCCCCCCHHHHHHHHHHC-CeEEec
Confidence 1100 0122 445555666666666543 33 56666543 2568888887 46788999999887 999999
Q ss_pred CCCCChhhHhh--cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 410 GHHCAQPLHRY--LGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 410 g~~~~~~~~~~--~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|..|....... -...+++|||++. ++++|++++++|.++++++..
T Consensus 396 g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 396 SEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence 98774321000 0013689999996 999999999999999987754
No 115
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.98 E-value=1.2e-30 Score=257.73 Aligned_cols=335 Identities=15% Similarity=0.175 Sum_probs=239.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCChhH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNATE 140 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~t~g~t~ 140 (458)
+++++|..+... +.|+.+.+++.+.+....... +.+ ++......+++++++++++ +.+++ +|++|+|+++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~-~i~~t~G~~~ 130 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHELSTIE--GYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDD-DVFVSDGAKC 130 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTT--TCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGG-GEEEESCHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcccccC--Ccc--CCCCCCCCHHHHHHHHHHHHccCCCCcc-eEEECCChHH
Confidence 578999988766 788999999999987642211 111 1111223457778888876 66654 9999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC------------CeEEEEeCCCCC--CCCHHHHHHhhc
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG------------ANLKFLNLNDDE--SPDLDKLKEMLS 206 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g------------~~~~~v~~~~~~--~~d~~~l~~~l~ 206 (458)
++.++ ..+ +++||.|+++.|+|++... .++..| .+++.+++++++ ..|++ + .
T Consensus 131 al~~l-~~l----~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~--~ 196 (432)
T 3ei9_A 131 DISRL-QVM----FGSNVTIAVQDPSYPAYVD----SSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLS---T--V 196 (432)
T ss_dssp HHHHH-HHH----HCTTCCEEEEESCCTHHHH----HHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGG---G--C
T ss_pred HHHHH-HHH----cCCCCEEEEeCCCCHHHHH----HHHHcCCcccccccccccCceEEeccCcccCCcCChh---h--C
Confidence 99986 445 5799999999999996543 333445 367888887543 33433 2 3
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC----CCCcEEEecccCCCCCCc
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG----LDADFLVASSHKMCGPTG 276 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~~gp~g 276 (458)
+++++|++++++||||.+++ +++|+++|+++|+++|+|++|+.... +..+.. .+.++++.|+||.+|+.|
T Consensus 197 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 57899999999999999998 56777779999999999999993321 222211 246799999999988777
Q ss_pred --eeEEEEecccc--------ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 277 --IGFLFGKSDLL--------SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 277 --~G~l~~~~~~~--------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+|+++++++++ +.+.... ....++++...+.++.+++.......++++.
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 335 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFNRII---------------------CTCFNGASNISQAGALACLTPEGLEAMHKVI 335 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHHHHH---------------------HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred cceEEEEEChHHhhcchHHHHHHHHHHh---------------------ccccCCCCHHHHHHHHHHHhcccHHHHHHHH
Confidence 89999998873 2221111 0112345555555555555322112367888
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCe
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~ 426 (458)
++++++++++.+.|+++ ++++..+.. ++++++.+++.+..++.+.+.+++||.+++|..|... .+++
T Consensus 336 ~~~~~~~~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~------~~~~ 402 (432)
T 3ei9_A 336 GFYKENTNIIIDTFTSL-GYDVYGGKN------APYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPG------GEGF 402 (432)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEECSS------SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGG------GTTE
T ss_pred HHHHHHHHHHHHHHHHC-CceecCCCc------ceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCC------CCCE
Confidence 99999999999999988 777765431 6789999987777888888766559999998865432 1689
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+||++. .+++++++++++|++-.+..+
T Consensus 403 iRis~~--~~~e~l~~~l~rl~~~~~~~~ 429 (432)
T 3ei9_A 403 VRVSAF--GHRENILEACRRFKQLYKHHH 429 (432)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEec--CCHHHHHHHHHHHHHHhhhcc
Confidence 999985 699999999999998776554
No 116
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.98 E-value=8.4e-31 Score=249.81 Aligned_cols=307 Identities=15% Similarity=0.158 Sum_probs=233.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC---CCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN---ASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~~v~~t~g~t~a 141 (458)
++++||+.+..+ +.|+.+.+++.+.+.....+ .+. . ...+++|+.++++++ ++++ +|++|+|++++
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~--~-~~~~~lr~~la~~~~~~~~~~~-~v~~~~G~~~a 88 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDALR------IYY--D-SPDEELIEKILSYLDTDFLSKN-NVSVGNGADEI 88 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGGGGG------SCC--C-SSCHHHHHHHHHHHTCSSCCGG-GEEEESSHHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhhhhh------cCC--C-CchHHHHHHHHHHcCCCCCCHH-HEEEcCChHHH
Confidence 357999999875 57899999988876321110 000 0 125689999999999 6654 99999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
+.+++.++ ||+|+++ |+|++ +...++..|++++.++.++++.+|++++ +++++|++++|+|||
T Consensus 89 l~~~~~~~-------gd~Vl~~-p~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~npt 151 (335)
T 1uu1_A 89 IYVMMLMF-------DRSVFFP-PTYSC----YRIFAKAVGAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPT 151 (335)
T ss_dssp HHHHHHHS-------SEEEECS-SSCHH----HHHHHHHHTCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTT
T ss_pred HHHHHHHh-------CCcEEEC-CCcHH----HHHHHHHcCCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCC
Confidence 99999865 7899999 99995 4555667799999999877767787776 578999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcc-c-CC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcccc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~-~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g 296 (458)
|.++|.+++.++++..| ++|+|++|+.... + ++ +...+.+++++|+||.+|++| +|++++++++++.+.....
T Consensus 152 G~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~- 229 (335)
T 1uu1_A 152 GHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL- 229 (335)
T ss_dssp CCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSC-
T ss_pred CCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcC-
Confidence 99999999999999889 9999999983211 1 22 234567899999999998777 8999998887665543211
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~ 376 (458)
..+++.....++..+++... .+++..++++++++++.+.|+++ ++++. +.
T Consensus 230 ----------------------~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~---- 279 (335)
T 1uu1_A 230 ----------------------PFNVSYVSQMFAKVALDHRE--IFEERTKFIVEERERMKSALREM-GYRIT-DS---- 279 (335)
T ss_dssp ----------------------TTCSCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CC----
T ss_pred ----------------------CCCcCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CC----
Confidence 12566666666666666521 36778888999999999999877 66543 22
Q ss_pred CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 377 ~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.++++++.+++.+..++.+.|.++ ||.++++ ++++|+|++ +.+|+++++++|+++
T Consensus 280 --~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~-------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 280 --RGNFVFVFMEKEEKERLLEHLRTK-NVAVRSF-------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp --CSSEEEEECCTHHHHHHHHHHHHH-TEEEEEE-------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred --CCeEEEEECCCCCHHHHHHHHHHC-CEEEEEC-------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 166888988754466788899888 9999862 568999987 468899999988753
No 117
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.97 E-value=3.6e-31 Score=259.08 Aligned_cols=346 Identities=16% Similarity=0.143 Sum_probs=249.5
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhh-hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLS-AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
+++.++.++.|+.+.+++.+.+.... .++.. .+..+ ....+..+.+|+.+++++|.++ ..+++++|++|+.+++
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~r~~la~~~g~~~--~~i~~~sGt~a~~~a~ 102 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGR-RYYGGCEYVDIVEELARERAKQLFGAEH--ANVQPHSGAQANMAVY 102 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCc--eEEEecCcHHHHHHHH
Confidence 34555556679999999988764211 11111 11111 2233444558899999999873 4455556699999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHH--HHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcCc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQ--LVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNMLA 222 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~--~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG 222 (458)
.++ +++||+|+++.++|++....+. ... ..+.+++.++++ .++.+|++++++.+++ ++++|+++. +| .|
T Consensus 103 ~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~-~~-~~ 175 (405)
T 2vi8_A 103 FTV----LEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAA-AA-YP 175 (405)
T ss_dssp HHH----CCTTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECC-SS-CC
T ss_pred HHh----cCCCCEEEEecccccchhcccchhhhc-cceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEeC-CC-CC
Confidence 988 6899999999999987642111 111 124578888875 4677899999999986 788888743 33 46
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCC---CCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
...++++|.++|+++|+++|+|++|+.|..+.+.... .+|++++|+||+++ |.| |++++++++++.+.+...
T Consensus 176 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~--- 251 (405)
T 2vi8_A 176 RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF--- 251 (405)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT---
T ss_pred ccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhc---
Confidence 7778999999999999999999999965443222222 58999999999775 888 999999877665543221
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCc
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQ 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~ 378 (458)
.+..++++..+++++.++++.+...+++++.++++++++++.+.|+++ ++++..+..
T Consensus 252 -----------------~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----- 308 (405)
T 2vi8_A 252 -----------------PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGT----- 308 (405)
T ss_dssp -----------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-----
T ss_pred -----------------ccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCC-----
Confidence 122467788888888888888765568899999999999999999988 888876432
Q ss_pred cccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC----CCCHHHHHHHHHHHHHHHH
Q 012718 379 RAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF----YNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 379 ~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~----~~t~~di~~l~~~l~~~~~ 452 (458)
.+.++++.++ +.+..++.+.|.++ ||.+++|..+.... ....++++|++++. ..+++|+++++++|+++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~--~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 309 DNHLLLVDLRPQQLTGKTAEKVLDEV-GITVNKNTIPYDPE--SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp SSSEEEEECGGGTCCHHHHHHHHHHH-TEECEEECCTTCSS--CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEccCCCCCHHHHHHHHHHc-CceeccCcCccccC--CCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 2668888886 34678899999888 99999876321000 00125689999986 4679999999999999987
Q ss_pred hhh
Q 012718 453 FFN 455 (458)
Q Consensus 453 ~~~ 455 (458)
+++
T Consensus 386 ~~~ 388 (405)
T 2vi8_A 386 NVG 388 (405)
T ss_dssp CTT
T ss_pred ccc
Confidence 654
No 118
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.97 E-value=4.2e-30 Score=255.65 Aligned_cols=377 Identities=11% Similarity=0.037 Sum_probs=258.7
Q ss_pred CCCccchhhhhcC-CCCcccccccCCCCeEEecCCCCCCCcHHHH-HHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHH
Q 012718 41 STDSVSLGHITRP-DFPILHQEVYGSKKLVYLDNAATSQKPIAVL-KALQNYYEAYNSNVHRGIHFLSAKATDEYELARK 118 (458)
Q Consensus 41 ~~~~~~~~~~~r~-~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (458)
..+..++.+.+++ ..|....+.+ --|+++-..+..++.+. +.+...+ +.+. ..+..++...+..+++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~l~~~~---n~~~--~~~~~~p~~~~lE~~v~~ 120 (475)
T 3k40_A 50 PEKWQDVMQDIERVIMPGVTHWHS----PKFHAYFPTANSYPAIVADMLSGAI---ACIG--FTWIASPACTELEVVMMD 120 (475)
T ss_dssp CCCHHHHHHHHHHHTGGGCCCTTC----TTBCCSSCCCCCHHHHHHHHHHHHH---CCCS--SSCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCC----cCceeeCCCCCcHHHHHHHHHHHHh---Cccc--cCccCCcHHHHHHHHHHH
Confidence 4444555555554 3444433322 23566654454444443 3333332 2232 233445566777778999
Q ss_pred HHHHHcCCCCC--------CcEEEeCChhHHHHHHHHHcCCCC---------------CCCCCEEEEcCCCCccchHHHH
Q 012718 119 KVAAFINASDS--------GEIVFTKNATEAINLVAYSWGLSN---------------LKSGDEVILTVAEHHSAIVPWQ 175 (458)
Q Consensus 119 ~la~~~g~~~~--------~~v~~t~g~t~a~~~~~~~l~~~~---------------~~~g~~vl~~~~~~~s~~~~~~ 175 (458)
.+++++|.+.. ...+||+|||+|+..++.+.+... ..+++.|+++..+|++. .
T Consensus 121 ~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~----~ 196 (475)
T 3k40_A 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSV----E 196 (475)
T ss_dssp HHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHH----H
T ss_pred HHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHH----H
Confidence 99999999853 168999999999988887752110 01346899999999965 4
Q ss_pred HHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC
Q 012718 176 LVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249 (458)
Q Consensus 176 ~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~ 249 (458)
+.++..|++++.||+++++ +|+++|+++|+++ +.+|++++++|++|.+.|+++|+++|++||+++|+|++|+.
T Consensus 197 ~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~ 275 (475)
T 3k40_A 197 RAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAG 275 (475)
T ss_dssp HHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGG
T ss_pred HHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHH
Confidence 5556679999999999889 9999999999764 67889999999999999999999999999999999999997
Q ss_pred CcccCC-----CCCC-CCcEEEecccC-CCCCCceeEEEEecccc--ccCC---CccccCcceEeeecCCCCCCCCCCcc
Q 012718 250 PHMVVD-----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSDLL--SAMP---PFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 250 g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~g~G~l~~~~~~~--~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
+....+ +... .+|++++|+|| +++|.|+|+++++++.. +.+. +++.+... . ..+......+
T Consensus 276 ~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--~-----~~~~~~~~~~ 348 (475)
T 3k40_A 276 SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ--G-----SAPDYRHWQI 348 (475)
T ss_dssp GGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------------------------------
T ss_pred HHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcC--C-----CCCCcccccc
Confidence 654211 1111 36999999999 66799999999987532 2221 11111000 0 0000011122
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--ChHHH
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--HPTDI 395 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~ 395 (458)
+.+.+ ...+.+.++++.+...|++++.++..++++++.+.|++++++++..++. .++++|++++. ...++
T Consensus 349 ~~sr~--~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~------~~iv~f~~~~~~~~~~~l 420 (475)
T 3k40_A 349 PLGRR--FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN------MGLVCFRLKGSNERNEAL 420 (475)
T ss_dssp CCCGG--GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCB------TTEEEEEESSCHHHHHHH
T ss_pred cCCCc--ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc------eEEEEEEeCCchHHHHHH
Confidence 22222 3456778888888888899999999999999999999999999986542 67999998753 25678
Q ss_pred HHHHhhhcCe-EeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 396 ATLLDQQYGV-ATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 396 ~~~l~~~~gi-~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.|.++ |+ .+.++. +....++|+++. +.++++||+++++.|+++.+++.+
T Consensus 421 ~~~L~~~-g~~~~~~~~---------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 421 LKRINGR-GHIHLVPAK---------IKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHH-TSCBCEEEE---------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC-CcEEEEeeE---------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 8889888 65 333322 122568999976 556999999999999999887643
No 119
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.97 E-value=2.4e-30 Score=250.47 Aligned_cols=328 Identities=16% Similarity=0.181 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEE
Q 012718 83 VLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVIL 162 (458)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~ 162 (458)
+.+++.+.+.... + ...+..+++++.++++++.+ ++++++|||+|+..++.++ .+++||+|++
T Consensus 21 ~~~~~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~---~~~~gd~v~~ 83 (374)
T 3uwc_A 21 YLNDLREFIKTAD-------F----TLGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKML---NIGAGDEVIT 83 (374)
T ss_dssp HHHHHHHHHHHTC-------C----SSCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT---TCCTTCEEEE
T ss_pred HHHHHHHHHHcCC-------c----ccChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc---CCCCCCEEEE
Confidence 7788877765421 1 11345678999999999987 7899999999999999987 3689999999
Q ss_pred cCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 163 TVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 163 ~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
+.++|++. ...++..|++++.++.++++.+|++++++.+++++++|+ ++||||.+.|+++|.++|+++|+++|
T Consensus 84 ~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li 156 (374)
T 3uwc_A 84 CANTFIAS----VGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIV 156 (374)
T ss_dssp ESSSCHHH----HHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEE
T ss_pred CCCccHHH----HHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEE
Confidence 99999965 444567799999999987788999999999998888887 78899999999999999999999999
Q ss_pred EeccccCCcccCCCCCCC--CcEEEeccc--CCCCCCc-eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCc
Q 012718 243 VDACQSVPHMVVDVQGLD--ADFLVASSH--KMCGPTG-IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 243 vD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~~gp~g-~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
+|++|+.|.. ++....+ .|+++.|+| |++++.| +|+++.++ ++.+.+.....++... .+.
T Consensus 157 ~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~----- 222 (374)
T 3uwc_A 157 EDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN--------RDV----- 222 (374)
T ss_dssp EECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE--------TTE-----
T ss_pred EeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc--------cCc-----
Confidence 9999998765 3333333 799999987 9888744 78888766 3444444332222110 000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC-EEEeCCCCCCcCccccEEEEEeCCCChHHH
Q 012718 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN-IRIYGPKPSEHVQRAALCSFNVENIHPTDI 395 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 395 (458)
....+.+. ....+.+++......+++++.++.+++.+++.+.|.++++ +++...... ....++.+.+...+..++
T Consensus 223 ~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l 298 (374)
T 3uwc_A 223 CVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREG---VYHVFHIYVLRVKYRDQL 298 (374)
T ss_dssp ESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTT---EECCCSSEEEEETTHHHH
T ss_pred cccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCC---CceeeEEEEEEcCCHHHH
Confidence 00001111 1223444444444456788899999999999999999877 876433321 112223333333367889
Q ss_pred HHHHhhhcCeEeccCC----CCChhhHhhcCC------------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 396 ATLLDQQYGVATRSGH----HCAQPLHRYLGV------------NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 396 ~~~l~~~~gi~~~~g~----~~~~~~~~~~g~------------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.|.++ ||.++++. ++.+ .+..++. .+.+|++++.++|++||+++++.|++++++.
T Consensus 299 ~~~L~~~-gi~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 299 FQYLKDN-GIEVKIHYPIAMHLQP-AAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHHT-TBCCBCSCSSCGGGSG-GGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHC-CCccccCCCCccccCh-hhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999988 99998875 2211 1111111 2689999999999999999999999998754
No 120
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=6.4e-30 Score=251.71 Aligned_cols=301 Identities=14% Similarity=0.133 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHcCCCC--------CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC
Q 012718 111 DEYELARKKVAAFINASD--------SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG 182 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~--------~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g 182 (458)
+..+.+.+.+++..|.+. .++|++|+|+++|+.+++.++ +++||+|++++|+|++ +...++..|
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g 153 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI----INPGDNVLLDEPAYSG----TLQSLHPLG 153 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH----CCTTCEEEEESSCCHH----HHHHHGGGT
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh----CCCCCEEEEeCCCcHH----HHHHHHHcC
Confidence 334444455555568764 248999999999999999998 6899999999999994 456667789
Q ss_pred CeEEEEeCCCCCCCCHHHHHHhhc------------CCceEEEE-ecccCcCcccccHH---HHHHHHHhcCcEEEEecc
Q 012718 183 ANLKFLNLNDDESPDLDKLKEMLS------------RKTKLVVI-HHISNMLASILPIE---EIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 183 ~~~~~v~~~~~~~~d~~~l~~~l~------------~~~~~v~~-~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a 246 (458)
++++.++.++++ +|+++|++.++ +++++|++ ++++||||.++|.+ +|+++|+++|++||+|++
T Consensus 154 ~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~ 232 (425)
T 2r2n_A 154 CNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDP 232 (425)
T ss_dssp CEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 999999987654 79999999887 35788865 79999999999955 999999999999999999
Q ss_pred ccC----CcccCC---CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc
Q 012718 247 QSV----PHMVVD---VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 247 ~~~----g~~~~~---~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
|+. |..+.+ +...+.+++++|+||.++ +| +||+++++++++.+..... .
T Consensus 233 ~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~---------------------~ 290 (425)
T 2r2n_A 233 YYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQ---------------------V 290 (425)
T ss_dssp TGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHH---------------------T
T ss_pred cccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHH---------------------H
Confidence 982 221122 233346799999999888 66 8999999987766553321 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHhc-CCCE-EEeCCCCCCcCccccEEEEEeCC-C
Q 012718 318 EAGTPAIGEAIGLGAAIDYLST----IGMQKIHAYEMELAKYLYENLLS-IPNI-RIYGPKPSEHVQRAALCSFNVEN-I 390 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~----~g~~~~~~~~~~l~~~l~~~L~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~ 390 (458)
...+++.....++..+++.+.. ..+++++++++++++++.+.|++ ++++ .+..+. .+.++++.+++ .
T Consensus 291 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~------~g~~~~~~~~~~~ 364 (425)
T 2r2n_A 291 STLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPA------AGMFLWIKVKGIN 364 (425)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCS------BSSEEEEEETTCS
T ss_pred hcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCC------ceEEEEEEeCCCC
Confidence 1235666666666677765321 12567788888999999999987 5665 444332 25689999975 3
Q ss_pred ChHH-HHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 391 HPTD-IATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 391 ~~~~-~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+..+ +.+.+.++ ||.+.+|..|.... -...+++||+++. .+++++++++++|.+++++
T Consensus 365 ~~~~~~~~~l~~~-gv~v~pg~~f~~~~---~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 365 DVKELIEEKAVKM-GVLMLPGNAFYVDS---SAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp CCHHHHHTHHHHT-TEECEEGGGGSSST---TSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC-CcEEechhhhcCCC---CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 4455 57778877 99999987553221 0125799999984 5999999999999999875
No 121
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.97 E-value=9.4e-30 Score=248.02 Aligned_cols=344 Identities=16% Similarity=0.174 Sum_probs=240.5
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG 157 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g 157 (458)
..|+.+.+++.+.+..... . .....+++++.+++++|.+ ++++++|+|+|+.+++.++. +++|
T Consensus 17 ~~~~~~~~a~~~~~~~~~~-------~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~~---~~~g 79 (393)
T 1mdo_A 17 AMGAEELAAVKTVLDSGWI-------T----TGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMALG---IGEG 79 (393)
T ss_dssp CCCHHHHHHHHHHHHHTCC-------S----SSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTT---CCTT
T ss_pred CCCHHHHHHHHHHHhcCCc-------C----CChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHcC---CCCC
Confidence 3567888888888765311 1 1245678999999999985 89999999999999999873 6789
Q ss_pred CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh
Q 012718 158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD 236 (458)
Q Consensus 158 ~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~ 236 (458)
|+|+++.++|++.. ..++..|++++.++++++ +.+|++++++.+++++++|++++ ++|.+.++++|.++|++
T Consensus 80 d~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~ 152 (393)
T 1mdo_A 80 DEVITPSMTWVSTL----NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGER 152 (393)
T ss_dssp CEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHH
T ss_pred CEEEeCCCccHhHH----HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHH
Confidence 99999999999653 445667999999998865 67899999999988899888764 69999999999999999
Q ss_pred cCcEEEEeccccCCcccCCCCCCC-CcEEEeccc--CCCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCCCC
Q 012718 237 VGAKVLVDACQSVPHMVVDVQGLD-ADFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFAD 312 (458)
Q Consensus 237 ~~~~vivD~a~~~g~~~~~~~~~~-~d~~~~s~~--K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 312 (458)
+|+++|+|++|+.|... +...++ .|++++|+| |++++..+|+++.+ +++++.+.+....+.... .. .. .+..
T Consensus 153 ~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~-~~~~ 228 (393)
T 1mdo_A 153 YGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD-AW-DR-QSGG 228 (393)
T ss_dssp HTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------
T ss_pred cCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCccc-ch-hh-hccc
Confidence 99999999999987543 222334 899999999 87765458899886 566665554332221110 00 00 0011
Q ss_pred CCCccC---CCC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC
Q 012718 313 PPSRFE---AGT-PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE 388 (458)
Q Consensus 313 ~~~~~~---~gt-~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (458)
.+..++ .|+ ..... .....++..+. +++++.++.+++++++.+.|.+++ +++...+.......+.++++.++
T Consensus 229 ~~~~~~~~~~g~~~~~~~-~~~a~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 304 (393)
T 1mdo_A 229 RAPQAEVLAPGYKYNLPD-LNAAIALAQLQ--KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVD 304 (393)
T ss_dssp ---CCEESSCCCBCCCCH-HHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECC
T ss_pred ccccccccccCccCCCCH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEec
Confidence 111221 222 11111 11212223332 367788888899999999999885 77754321000112347889887
Q ss_pred ----CCChHHHHHHHhhhcCeEeccCCCCCh--hhHhh------cC-----CCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 389 ----NIHPTDIATLLDQQYGVATRSGHHCAQ--PLHRY------LG-----VNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 389 ----~~~~~~~~~~l~~~~gi~~~~g~~~~~--~~~~~------~g-----~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+.+..++.+.|.++ ||.++++..|.. +.+.. +. ....+|++++.++|++|++++++.|++++
T Consensus 305 ~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 383 (393)
T 1mdo_A 305 EARCGITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 383 (393)
T ss_dssp HHHHSSCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 56788999999988 999998876621 11110 00 04589999999999999999999999988
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
+..
T Consensus 384 ~~~ 386 (393)
T 1mdo_A 384 GQG 386 (393)
T ss_dssp C--
T ss_pred hcC
Confidence 754
No 122
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.97 E-value=3.4e-30 Score=252.68 Aligned_cols=301 Identities=18% Similarity=0.197 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
.....+++++.+++++|.+ +.+++++|++|++.++.++ +++||+|+++.+.|++....+...++..|++++.+
T Consensus 112 ~~~~~~~l~~~lA~l~g~~---~~v~~~sG~~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGAE---STLLMASGMCASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred CChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 4566778999999999986 4455556669999999987 67899999999999987655554566789999999
Q ss_pred eCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEec
Q 012718 189 NLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s 267 (458)
+.+ |++++++++++++ ++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+... ...++++|+++.|
T Consensus 185 ~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~Div~~S 258 (445)
T 1qgn_A 185 DPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGADLVLHS 258 (445)
T ss_dssp CSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTCSEEEEC
T ss_pred CCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCCEEEEEC
Confidence 875 8999999999888 99999999999999999999999999999999999999977542 3345689999999
Q ss_pred ccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 268 SHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 268 ~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
+||++|+.| +|+++.++++++.+...... ..++++....+.+..+++.+ ..
T Consensus 259 ~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~---------------------~g~~~~~~~a~~~~~~l~~l-----~~ 312 (445)
T 1qgn_A 259 ATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI---------------------LGGALNPNAAYLIIRGMKTL-----HL 312 (445)
T ss_dssp TTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH---------------------HCCCCCHHHHHHHHHHGGGH-----HH
T ss_pred CcccccccccceEEEEEECHHHHHHHHHHHHH---------------------hCCCCCHHHHHHHHHhHHHH-----HH
Confidence 999999887 99999998876655422110 01234443333333333332 33
Q ss_pred HHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCC-c---------CccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCC
Q 012718 345 IHAYEMELAKYLYENLLSIPNI-RIYGPKPSE-H---------VQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~-~---------~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~ 411 (458)
..++..++++++.+.|++.|++ ++..+.-.. + ...+++++|.+++. ....+.+.+... ++.++.|.
T Consensus 313 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~-~i~~s~G~ 391 (445)
T 1qgn_A 313 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIP-YIAPSFGG 391 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSS-EECSCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCc-eEeccCCC
Confidence 3344556688899999988888 555542110 0 12477999999862 123344444323 77888888
Q ss_pred CCChh--------------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 412 HCAQP--------------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 412 ~~~~~--------------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.|+.. ....+|. ++.||+|++. ||++.+++.|+++++.
T Consensus 392 ~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~----Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 392 CESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDS 444 (445)
T ss_dssp SSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred CceeeecccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence 87631 1224555 4799999994 7899999999998864
No 123
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.97 E-value=3.5e-31 Score=258.49 Aligned_cols=339 Identities=18% Similarity=0.140 Sum_probs=233.3
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
.+.+.++.+.....+.+.+++..+... . +.+.++....+..+++++.+++++|.+ +++++++|++|+..++
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l 96 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAARFALE-----E-SGYIYTRLGNPTTDALEKKLAVLERGE---AGLATASGISAITTTL 96 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHHC-----------CCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHHhhcCC-----C-CCCceeCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHH
Confidence 345667777776666666666521111 0 111222223566788999999999986 5667777889999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
.++ +++||+|+++.++|++....+..+++..|.+++.++.+ |++++++.+++++++|++++++||||.+.|
T Consensus 97 ~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~ 167 (398)
T 2rfv_A 97 LTL----CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVD 167 (398)
T ss_dssp HHH----CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCC
T ss_pred HHH----hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccC
Confidence 988 67999999999999988766666667789999999875 899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCc--eeEEEEeccccc-cCCCccccCcceEe
Q 012718 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTG--IGFLFGKSDLLS-AMPPFLGGGEMISD 302 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~ 302 (458)
+++|.++|+++|+++|+|++|+.+.....+ ..++|+++.|+||+++ |.+ +|+++++++.++ .+.+...++
T Consensus 168 l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~----- 241 (398)
T 2rfv_A 168 IETVAGIAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI----- 241 (398)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT-----
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhC-----
Confidence 999999999999999999999977653222 4579999999999775 555 499999988765 444332211
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCC-C-----
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY-GPKPS-E----- 375 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~-~----- 375 (458)
..++.+.....++..+++.+ ....++..++.+.+.+.|.+.+.++-. .+.-. .
T Consensus 242 ---------------~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~ 301 (398)
T 2rfv_A 242 ---------------TGGCMSPFNAWLTLRGVKTL-----GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL 301 (398)
T ss_dssp ---------------TCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred ---------------CCCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHH
Confidence 12355655555555555433 223344455666677777665433211 11000 0
Q ss_pred ----cCccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCCC------CChhhHh--------hcCC-CCeEEEeeCCC
Q 012718 376 ----HVQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGHH------CAQPLHR--------YLGV-NASARASLHFY 434 (458)
Q Consensus 376 ----~~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~~------~~~~~~~--------~~g~-~~~lRis~~~~ 434 (458)
....+++++|.+++. ....+.+.+... |+.+++|.. |....+. ..|. ++.+|+|++..
T Consensus 302 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~-~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 380 (398)
T 2rfv_A 302 GQRQMSLPGGIISFEIAGGLEAGRRMINSVELC-LLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLE 380 (398)
T ss_dssp HHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSS-EECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSS
T ss_pred HHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcc-eeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCC
Confidence 012477999998752 122233333333 777777754 2221111 2333 68999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 012718 435 NTKEDVDEFIHALNET 450 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~ 450 (458)
+++++|++++++|+++
T Consensus 381 ~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 381 DPEDIINDLEHAIRKA 396 (398)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988764
No 124
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.97 E-value=5.5e-30 Score=256.79 Aligned_cols=326 Identities=15% Similarity=0.132 Sum_probs=230.9
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
.|..++++..+.+...... ....+ .......++|+++++++ | ++++ +|++|+|+++++.+++.++
T Consensus 107 ~p~~~~~~a~~~l~~~~~~-~~~~Y----~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l--- 177 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGR-ATGAY----SHSQGIHGLRDAIASGIASRDGFPANAD-DIFLTDGASPGVHLMMQLL--- 177 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTS-CSSSC----CCTTCCHHHHHHHHHHHHHHHSSCCCGG-GEEEESSSHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHcCCCC-cCCCc----CCCcChHHHHHHHHHHHHhhcCCCCCcc-cEEEcCCHHHHHHHHHHHH---
Confidence 4555666665555442110 01111 12223345666666665 3 4444 9999999999999999998
Q ss_pred CC-CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcC------CceEEEEecccCcCcc
Q 012718 153 NL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLAS 223 (458)
Q Consensus 153 ~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~ 223 (458)
+ ++||.|+++.|+|+ .+...++..|++++.++++++ +.+|+++|++.+++ ++++|++++++||||.
T Consensus 178 -~~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~ 252 (500)
T 3tcm_A 178 -IRNEKDGILVPIPQYP----LYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252 (500)
T ss_dssp -CCSTTEEEEEEESCCT----HHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred -cCCCCCEEEEeCCCcH----hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence 4 78999999999999 445566777999999998865 47899999999976 6899999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCccc-----CC-------C---CCCCCcEEEecccCCC-CCCc--eeEEEE
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VD-------V---QGLDADFLVASSHKMC-GPTG--IGFLFG 282 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~-------~---~~~~~d~~~~s~~K~~-gp~g--~G~l~~ 282 (458)
+++ +++|+++|+++|+++|+|++|+..... .+ + ......+++.|+||.+ |++| +||+++
T Consensus 253 ~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 332 (500)
T 3tcm_A 253 VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEI 332 (500)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEE
Confidence 998 567777799999999999999853321 11 1 1111246778999976 7777 899998
Q ss_pred ---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH-----------HHHHhCHHHHHHH
Q 012718 283 ---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-----------YLSTIGMQKIHAY 348 (458)
Q Consensus 283 ---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-----------~~~~~g~~~~~~~ 348 (458)
++++++.+..... ...+++.....++..+++ +... ++++.++
T Consensus 333 ~~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~ 388 (500)
T 3tcm_A 333 TGFSAPVREQIYKIAS----------------------VNLCSNITGQILASLVMNPPKASDESYASYKAE--KDGILAS 388 (500)
T ss_dssp ESCCTTHHHHHHHHHH----------------------TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHH--HHHHHHH
T ss_pred eCCCHHHHHHHHHHHh----------------------cccCCCHHHHHHHHHHhcCccccchhHHHHHHH--HHHHHHH
Confidence 7777665543211 123566666666666664 3333 5778889
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------------CChH-HHH-HHHhhhcCeEeccCCCCC
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------------IHPT-DIA-TLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------~~~~-~~~-~~l~~~~gi~~~~g~~~~ 414 (458)
++++++++.+.|++++++++..+.. +.++++++.- .... .++ +.|.+. ||.+.+|+.|.
T Consensus 389 l~~~~~~l~~~L~~~~g~~~~~~~g------~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~-gI~v~pg~~f~ 461 (500)
T 3tcm_A 389 LARRAKALEHAFNKLEGITCNEAEG------AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLEST-GIVVVPGSGFG 461 (500)
T ss_dssp HHHHHHHHHHHHHTSTTEECCCCCB------TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHH-CEECEESTTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEecCCe------EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHC-CEEEEeCcccC
Confidence 9999999999999999998875541 3355544431 1112 223 455566 99999998765
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.. ...+++|++++ .+++++++++++|.++++++.+
T Consensus 462 ~~-----~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 462 QV-----PGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp CC-----TTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred CC-----CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 31 12568999999 7889999999999999887654
No 125
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.97 E-value=5.9e-30 Score=250.74 Aligned_cols=316 Identities=17% Similarity=0.202 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+++++.+++++|.+ ++++++|+++|++.++.++ +++||+|+++.++|+++...+...++..|++++.++
T Consensus 55 ~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 127 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL---EAVVLASGQAATFAALLAL----LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVD 127 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 356788999999999986 8999999999999999987 689999999999999877666665667799999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
. |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.........++|++++|+|
T Consensus 128 ~------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~ 201 (412)
T 2cb1_A 128 P------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLT 201 (412)
T ss_dssp S------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETT
T ss_pred C------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCc
Confidence 6 4899999999999999999999999999999999999999999999999999873222222457999999999
Q ss_pred CCCC-CCc-eeEEEEeccccc-----cCC-CccccCcceEeeecCCCCCCCCCCcc--C-CC-CCCHHHHHHHHHHHHHH
Q 012718 270 KMCG-PTG-IGFLFGKSDLLS-----AMP-PFLGGGEMISDVFLDHSTFADPPSRF--E-AG-TPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 270 K~~g-p~g-~G~l~~~~~~~~-----~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~--~-~g-t~~~~~~~~l~~al~~~ 337 (458)
|+++ |.+ +|++++.++... .+. +...|.... ..+ ....+....+.+ . .| ..+....+.....++.
T Consensus 202 K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~- 278 (412)
T 2cb1_A 202 KWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW-EAL-RARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET- 278 (412)
T ss_dssp TTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------H-HHH-GGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-
T ss_pred ccccCCCCcEEEEEEeccccccccccccccccccccchh-hcc-chHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-
Confidence 9765 555 788877663211 111 111111000 000 000000000000 0 11 2222222222222222
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCeE
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGVA 406 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~ 406 (458)
++...++..++.+++.+.|.+.+++.+. .+..... ...++++.|.+ + +.+++.+.+.+. ||.
T Consensus 279 ----l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~-~i~ 351 (412)
T 2cb1_A 279 ----VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAI-RLL 351 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHC-SSE
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhC-Cee
Confidence 3445556678899999999998888743 3321100 13467999999 6 677788888776 999
Q ss_pred eccCC---------CCChhhHh--------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 407 TRSGH---------HCAQPLHR--------YLGV-NASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 407 ~~~g~---------~~~~~~~~--------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+ .++ +|....+. .+|. ++.||+|++.++++++|+.+.++|++
T Consensus 352 ~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 352 K-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp E-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred e-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 8 773 56443322 2343 68999999999999999999998864
No 126
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.97 E-value=3.1e-31 Score=260.57 Aligned_cols=346 Identities=12% Similarity=0.117 Sum_probs=226.8
Q ss_pred CCeEEecCCCCCCCc---HHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEEeC
Q 012718 66 KKLVYLDNAATSQKP---IAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~t~ 136 (458)
++++.|..+.....| +.+.+++.+.+.... ......++.......++|+++|+++ +++++ +|++|+
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~ 105 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGK----AADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQ-NIALTN 105 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTH----HHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGG-GEEEES
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCc----ccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcc-cEEEeC
Confidence 578999988766533 334444444433210 0001111222344567888888887 45554 999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCC-----EEEEc-CCCCccchHHHHHHHH--HcCCeEEEEeCCC-CCCCCHHHHHHhhcC
Q 012718 137 NATEAINLVAYSWGLSNLKSGD-----EVILT-VAEHHSAIVPWQLVAQ--KTGANLKFLNLND-DESPDLDKLKEMLSR 207 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~-----~vl~~-~~~~~s~~~~~~~~a~--~~g~~~~~v~~~~-~~~~d~~~l~~~l~~ 207 (458)
|+|+|+++++.++ .++|| +|+++ .|+|++.......... ..+..+..++.+. ++.+|++.++ +++
T Consensus 106 G~t~al~~~~~~l----~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~ 179 (417)
T 3g7q_A 106 GSQSAFFYLFNLF----AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGE 179 (417)
T ss_dssp CHHHHHHHHHHHH----SBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCT
T ss_pred CcHHHHHHHHHHH----cCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--ccc
Confidence 9999999999998 56776 89997 9999854322211101 1233444454331 2457888887 777
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCCCCCc--e
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
++++|++++++||||.++| +++|+++|++||+++|+|++|+.+.. .......+.+++++|+|| ++++| +
T Consensus 180 ~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~ 258 (417)
T 3g7q_A 180 ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRC 258 (417)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCC
T ss_pred CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcce
Confidence 8999999999999999999 88999999999999999999984321 111223467899999999 46556 9
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH----H-HHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ----K-IHAYEMEL 352 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~----~-~~~~~~~l 352 (458)
|+++.++++++.+......+ ..+++.....++...++ ...+. + ++++++++
T Consensus 259 G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~ 314 (417)
T 3g7q_A 259 GIIIANDKTITAIANMNGII---------------------SLAPGGMGPAMMCEMIK---RNDLLRLSETVIKPFYYQR 314 (417)
T ss_dssp EEEECCHHHHHHHHHHHHHH---------------------CCCCCSHHHHHHHHHHH---TTCHHHHHHHTHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHhhcce---------------------eeCCCcHHHHHHHHHHc---CcchHHHHHHHHHHHHHHH
Confidence 99999888776665332211 11233333333333333 22221 2 55566667
Q ss_pred HHHHHHHHhc-CC--CEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcC-CCCe
Q 012718 353 AKYLYENLLS-IP--NIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG-VNAS 426 (458)
Q Consensus 353 ~~~l~~~L~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g-~~~~ 426 (458)
++.+.+.|.+ ++ ++++..+. .+.++++.++. .+..++.+.|.++ ||.+++|..|.......++ .+++
T Consensus 315 ~~~~~~~l~~~l~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~~~~~~ 387 (417)
T 3g7q_A 315 VQQTIAIIRRYLSEERCLIHKPE------GAIFLWLWFKDLPITTELLYQRLKAR-GVLMVPGHYFFPGLDKPWPHTHQC 387 (417)
T ss_dssp HHHHHHHHHHHCCTTTCEEECCC------BSSEEEEECTTCSSCHHHHHHHHHHT-TEECEEGGGGCTTBSSCCGGGGGE
T ss_pred HHHHHHHHHHhcccCCceeeCCC------cceEEEEEcCCCCCCHHHHHHHHHHC-CEEEECchhhCCCCccccccCCCe
Confidence 7777777654 34 46766553 25688898874 5788999999877 9999999866442110000 0468
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+|||++. +++|+++++++|.++++++.+
T Consensus 388 iRis~~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 388 MRMNYVP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp EEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence 9999994 999999999999999987654
No 127
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.97 E-value=1.5e-30 Score=253.74 Aligned_cols=301 Identities=13% Similarity=0.105 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+|+++|.+ ++++++||++|+++++.++ +++||+|+++.+.|+++...+....+..|++++.++
T Consensus 81 ~p~~~~le~~lA~l~g~~---~~i~~ssGt~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 153 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGA---GCVLFPCGAAAVANSILAF----IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 153 (415)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred CchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC
Confidence 455678999999999986 5677789999999999987 689999999999999887766666667899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccCCCCCCCCcEEEec
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s 267 (458)
.+ |++++++++++++++|++++++||+|.+.|+++|+++|++ +|+++|+|++|+.+.....+ ++++|++++|
T Consensus 154 ~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~Div~~S 227 (415)
T 2fq6_A 154 PL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGIDVSIQA 227 (415)
T ss_dssp TT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTCSEEEEE
T ss_pred CC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCCeEEEEe
Confidence 65 8899999999999999999999999999999999999999 99999999999966431112 4579999999
Q ss_pred ccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 268 SHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 268 ~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
+||++|+.| +|+++.++++++.+..... .+ .++.+....+.+..+++.+ ..
T Consensus 228 ~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~--------------------~~-G~~~~~~~a~~~~~~l~~l-----~~ 281 (415)
T 2fq6_A 228 ATKYLVGHSDAMIGTAVCNARCWEQLRENAY--------------------LM-GQMVDADTAYITSRGLRTL-----GV 281 (415)
T ss_dssp TTTTTTCSSSCCCEEEEECTTTHHHHHHHHH--------------------HT-TCCCCHHHHHHHHHHHHHH-----HH
T ss_pred CccccCCCCCceEEEEEeCHHHHHHHHHHHH--------------------hc-CCCCCHHHHHHHHhhhhHH-----HH
Confidence 999888776 7999998876655442211 00 1223332222232333333 33
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEE-eCCCCCC-c---------CccccEEEEEeCCC-ChHHHHHHHhhh--cCeEeccC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRI-YGPKPSE-H---------VQRAALCSFNVENI-HPTDIATLLDQQ--YGVATRSG 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~-~~~~~~~-~---------~~~~~~v~~~~~~~-~~~~~~~~l~~~--~gi~~~~g 410 (458)
..++..++++.+.+.|.+.|.+.. ..+.-.. + ...+++++|.+++. +..+..+.+... +++.++.|
T Consensus 282 r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G 361 (415)
T 2fq6_A 282 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWG 361 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCC
Confidence 445556777888888888776653 2221100 0 12467999999863 233444444322 25667778
Q ss_pred CCCChhh--------H----hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 411 HHCAQPL--------H----RYLGV-NASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 411 ~~~~~~~--------~----~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+.|+... + ..+|. ++.||+|++..+++++|+.+.++|++
T Consensus 362 ~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 362 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 7765322 1 12454 57999999999999999999888864
No 128
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.97 E-value=4.3e-30 Score=248.64 Aligned_cols=331 Identities=16% Similarity=0.170 Sum_probs=234.6
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+.... + ......+++++.+++++|.+ ++++++|||+|++.++.++ .+++||
T Consensus 15 ~~~~~~~a~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l---~~~~gd 77 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRNW-------F----ILGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGY---DIGFGD 77 (373)
T ss_dssp HHHHHHHHHHHHHHHTC-------C----SSSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred CCHHHHHHHHHHHHCCC-------c----cCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc---CCCCcC
Confidence 45667777777665421 1 12356778999999999986 8999999999999999988 368999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|++.... ++..|++++.++++ +++.+|++++++++++++++|+ ++|+||...|+++|.++|+++
T Consensus 78 ~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~ 150 (373)
T 3frk_A 78 EVIVPSNTFIATALA----VSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKY 150 (373)
T ss_dssp EEEEETTSCTHHHHH----HHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHH
T ss_pred EEEECCCCcHHHHHH----HHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHc
Confidence 999999999976443 45569999999988 4578899999999999998888 667899999999999999999
Q ss_pred CcEEEEeccccCCcccCCCCCCC--CcEEEeccc--CCCCCCc-eeEEEEecc-ccccCCCccccCcceEeeecCCCCCC
Q 012718 238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASSH--KMCGPTG-IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~~gp~g-~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
|+++|+|++|+.|.. ++....+ .|++++|++ |++|+.| +|+++.+++ +.+.+.....++... .+.
T Consensus 151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~--------~~~ 221 (373)
T 3frk_A 151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK--------KYH 221 (373)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSB--------TTB
T ss_pred CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCccc--------CCc
Confidence 999999999998876 5544445 799999966 9888744 788887653 544444433322211 010
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH 391 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 391 (458)
. ...|... .+..+.+++......+++++.++.+++.+++.+.|.+++ +.+...... ....+..|.+...+
T Consensus 222 ~----~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~---~~~~~~~~~~~~~~ 291 (373)
T 3frk_A 222 H----IYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADY---AKHVWYTFVIRSEK 291 (373)
T ss_dssp C----CSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTT---EECCCSSEEEEESS
T ss_pred c----ccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCC---CceeeEEEEEEeCC
Confidence 0 1111100 112333344444444578889999999999999999885 665433211 12223333333336
Q ss_pred hHHHHHHHhhhcCeEeccCC----CCChhhHhhcCC------------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 392 PTDIATLLDQQYGVATRSGH----HCAQPLHRYLGV------------NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 392 ~~~~~~~l~~~~gi~~~~g~----~~~~~~~~~~g~------------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
..++.+.|.++ ||.++++. +|.+. ...++. .+.+|++++.++|++||+++++.|+++..+-
T Consensus 292 ~~~l~~~L~~~-gI~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 292 RDELQKYLNNN-GIGTLIHYPIPIHLQQA-YKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp HHHHHHHHHHT-TBCCBCSCSSCGGGSGG-GGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHC-CCCcccCcCCccccChH-HHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 78999999998 99998654 22221 112221 2689999999999999999999998876543
No 129
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.97 E-value=8.9e-31 Score=250.87 Aligned_cols=326 Identities=16% Similarity=0.176 Sum_probs=225.2
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
..+|+|+++....+++.+.+++.+... +... +.......++++++++++|.+ ++++++|||+|+.++
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~~~--------~~~~--y~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~~ 69 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQAEV--------GDDV--YGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVS 69 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTCCC--------CCGG--GTCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcCCC--------CCcc--cCCChHHHHHHHHHHHHhCCc---eEEEecCcHHHHHHH
Confidence 356899999988888888887754311 0001 112334668999999999985 778899999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecccC
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISN 219 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n 219 (458)
+.++ +++||+|++++++|.+.... ...+...|++++.+ .++++.+|++++++++++ ++++|++++++|
T Consensus 70 ~~~~----~~~gd~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~n 143 (347)
T 1jg8_A 70 IMAH----TQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN 143 (347)
T ss_dssp HHHH----CCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred HHHh----cCCCCEEEEcCcchhhhccc-cchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEecccc
Confidence 9887 68999999999999754321 12455679999988 555677899999999975 689999999999
Q ss_pred cC-ccccc---HHHHHHHHHhcCcEEEEeccccCCc---ccCCCCC--CCCcEEEecccCCCCCCcee-EEEEecccccc
Q 012718 220 ML-ASILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQG--LDADFLVASSHKMCGPTGIG-FLFGKSDLLSA 289 (458)
Q Consensus 220 ~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~~--~~~d~~~~s~~K~~gp~g~G-~l~~~~~~~~~ 289 (458)
|| |.++| +++|.++|+++|+++|+|++|..+. ...+... .+.|.+++|+||+++++ +| +++.++++++.
T Consensus 144 pt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~ 222 (347)
T 1jg8_A 144 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIER 222 (347)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHH
T ss_pred ccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHH
Confidence 99 99988 4688899999999999999985432 1112111 24788888999977743 45 56667766655
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+..+...++. . ...+.....+...+++.. .+.+.+ ..++++++.+.|+++ ++++.
T Consensus 223 ~~~~~~~~~~----------------~---~~~~~~~~~~~~~~l~~~----~~~~~~-~~~~~~~l~~~L~~~-~~~~~ 277 (347)
T 1jg8_A 223 ARKARKMLGG----------------G---MRQAGVLAAAGIIALTKM----VDRLKE-DHENARFLALKLKEI-GYSVN 277 (347)
T ss_dssp HHHHHHHHTC----------------C---CSSTHHHHHHHHHHHHHS----STTHHH-HHHHHHHHHHHHHHH-TCBCC
T ss_pred HHHHHHHcCC----------------c---hhHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHhc-Cceec
Confidence 4322111000 0 011111222222333321 122222 234667778888776 66543
Q ss_pred CCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+ ..++++++.++ +.+..++.+.|.++ ||.++++. .+++|++++.+++++|+++++++|
T Consensus 278 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------------~~~iRl~~~~~~~~e~i~~~~~~l 339 (347)
T 1jg8_A 278 PED-----VKTNMVILRTDNLKVNAHGFIEALRNS-GVLANAVS------------DTEIRLVTHKDVSRNDIEEALNIF 339 (347)
T ss_dssp GGG-----CCSSEEEEECTTSSSCHHHHHHHHHHH-TEECEEEE------------TTEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCC-----CcceEEEEEcccccCCHHHHHHHHHHC-CCEEecCC------------CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 222 12678899987 45688999999888 99998643 468999999889999999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
+++++++
T Consensus 340 ~~~l~~~ 346 (347)
T 1jg8_A 340 EKLFRKF 346 (347)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988753
No 130
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.97 E-value=7.5e-31 Score=259.12 Aligned_cols=284 Identities=17% Similarity=0.193 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+++ +|++ +++++|+|+|+|+..++.++ +++||+|++++++|++...++ ...|++++.++.
T Consensus 57 ~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~----~~~gd~Vlv~~~~h~s~~~~~----~~~G~~~~~v~~ 125 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSF----SQKKGDILMARNVHKSVLHAL----DISQQEGHFIET 125 (446)
T ss_dssp SHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTT----TTSSSCEEECTTCCHHHHHHH----HHHTCCEEECEE
T ss_pred hHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHh----cCCCCEEEEecCccHHHHHHH----HHcCCeEEEEeC
Confidence 456789999999 9987 38999999999999999987 689999999999999776544 345999999988
Q ss_pred --CCC----CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCC
Q 012718 191 --NDD----ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGL 259 (458)
Q Consensus 191 --~~~----~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~ 259 (458)
+++ +.+|++++ +.++++++++++ .|++|.+.|+++|.++|+++|+++|+|++|+. .. +.+....
T Consensus 126 ~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~ 200 (446)
T 2x3l_A 126 HQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNY 200 (446)
T ss_dssp EECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGG
T ss_pred eeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHc
Confidence 554 45688877 456789999999 57799999999999999999999999999986 22 3444455
Q ss_pred CCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 260 DADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 260 ~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
++|+++.|+|| ++|+.|+|+++++++.++ +.++..++ ..+..+++++..++++.++++++.
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~-----------------~~~~~~s~~~~~~aal~~a~~~l~ 262 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL-----------------SYFQTSSPSYLIMASLESAAQFYK 262 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH-----------------HHHSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH-----------------HHHcCCCchHHHHHHHHHHHHHHH
Confidence 78999999999 778889999999988654 22221111 134567899988889988999998
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEec-cCCCCChhh
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATR-SGHHCAQPL 417 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~-~g~~~~~~~ 417 (458)
..|.+++.++.+++++++.+. ++++..+.. ...+++.+++.+..++.+.|.++ ||.++ +|
T Consensus 263 ~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~------~~~l~i~~~~~~~~~l~~~L~~~-GI~v~~~g------- 323 (446)
T 2x3l_A 263 TYDSTLFFAKRAQLIECLENK-----GFEMLQVDD------PLKLLIKYEGFTGHDIQNWFMNA-HIYLELAD------- 323 (446)
T ss_dssp HCCCHHHHHHHHHHHHHHHHH-----TCEEEECSS------TTEEEEECTTSCHHHHHHHHHHT-TEEESEEC-------
T ss_pred HhCHHHHHHHHHHHHHHHHHc-----CCEECcCCC------CeEEEEEeCCcCHHHHHHHHHHC-CCEEEecC-------
Confidence 877777888888999888887 666665431 23688888877888999999999 99986 43
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++|++++.+++++|+ +++++|+++++++
T Consensus 324 ------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 ------DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp ------SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred ------CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 35899999998999999 9999999998765
No 131
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.97 E-value=1.8e-29 Score=246.40 Aligned_cols=333 Identities=15% Similarity=0.131 Sum_probs=236.8
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+... .+. ......++++.+++++|.+ ++++++|||+|+..++.++. +++||
T Consensus 42 ~~~~v~~a~~~~~~~~-------~y~----~~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~~---~~~gd 104 (399)
T 2oga_A 42 LRAETDAAIARVLDSG-------RYL----LGPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGLG---IGPGD 104 (399)
T ss_dssp THHHHHHHHHHHHHHT-------CCS----SSHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred CCHHHHHHHHHHHhcC-------CCC----CchhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHhC---CCCcC
Confidence 3478888888887541 111 1245678999999999986 67889999999999999873 67899
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|++. ...++..|++++.+++++ ++.+|++++++.+++++++|+ ++||||.+.|+++|.++|+++
T Consensus 105 ~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~ 177 (399)
T 2oga_A 105 EVIVPSHTYIAS----WLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRH 177 (399)
T ss_dssp EEEEESSSCTHH----HHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred EEEECCCccHHH----HHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHc
Confidence 999999999964 445567799999999886 478899999999988888877 467899999999999999999
Q ss_pred CcEEEEeccccCCcccCCCCCCC--CcEEEecc--cCCCCCCc-eeEEEEe-ccccccCCCccccCcceEeeecCCCCCC
Q 012718 238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASS--HKMCGPTG-IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s~--~K~~gp~g-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
|+++|+|++|+.+.. .+....+ .|++++|+ +|++|+.| +|+++.+ +++++.+.+....+.. ..|.
T Consensus 178 ~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~--------~~~~ 248 (399)
T 2oga_A 178 GLHIVEDAAQAHGAR-YRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSR--------QKYS 248 (399)
T ss_dssp TCEECEECTTCTTCE-ETTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCS--------STTC
T ss_pred CCEEEEECcccccCc-cCCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcc--------cccc
Confidence 999999999998754 2322233 69999999 59888755 7888886 5666555433221110 0011
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeCCC
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVENI 390 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 390 (458)
.....+ ..+.+....+++..+++.+ +.+.++.+++.+++.+.|.+++++++...+. ...+ ++.|.+...
T Consensus 249 ~~~~g~-~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----~~~~~~~~~~~~~~ 318 (399)
T 2oga_A 249 HETKGT-NSRLDEMQAAVLRIRLAHL-----DSWNGRRSALAAEYLSGLAGLPGIGLPVTAP----DTDPVWHLFTVRTE 318 (399)
T ss_dssp CCSCCC-BCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHTTTCTTCBCCCCCT----TEECCCSSEEEECS
T ss_pred cccccc-CCCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCCccccCCCC----CCcceeEEEEEECC
Confidence 000011 1234555555554555443 4566777888999999999888877643321 1122 223554444
Q ss_pred ChHHHHHHHhhhcCeEeccCCCCC---hhhHhhcCC------------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 391 HPTDIATLLDQQYGVATRSGHHCA---QPLHRYLGV------------NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 391 ~~~~~~~~l~~~~gi~~~~g~~~~---~~~~~~~g~------------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+..++.+.|.++ ||.++++.... .+.+..+|. .+.+||+++.+++++|++++++.|++++++++
T Consensus 319 ~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 319 RRDELRSHLDAR-GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp SHHHHHHHHHHT-TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHC-CCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678899999988 99998743111 011112221 25899999999999999999999999988764
No 132
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.97 E-value=1.4e-30 Score=256.51 Aligned_cols=341 Identities=16% Similarity=0.196 Sum_probs=235.5
Q ss_pred CCeEEecCCCCC----CCcHHHHHHHH--HHHHHhccCCCCCcchhhh-HHHHHHHHHHHHHHHHcCCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS----QKPIAVLKALQ--NYYEAYNSNVHRGIHFLSA-KATDEYELARKKVAAFINASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~----~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~ 138 (458)
.+.+.|..+... +.|+.+.+++. +.+.. +....++ .......++|+.++++++++++ +|++|+|+
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-------~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~ 96 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-------GLDLRNYPGGVAGLPSARALFAGYLDVKAE-NVLVWNNS 96 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-------TEETTSSCSCTTCCHHHHHHHHHHTTSCGG-GEEECSSC
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-------chhhhCCCCCCCChHHHHHHHHHHhCCChh-hEEEeCCc
Confidence 456788777665 34555666653 32211 1111111 1233456899999999999876 99999999
Q ss_pred hHHHH--HHHHHcCCCCCC--C---------CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh
Q 012718 139 TEAIN--LVAYSWGLSNLK--S---------GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 139 t~a~~--~~~~~l~~~~~~--~---------g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
++++. +++.++ ++ + ||+|+++.|+|++ +...++..|++++.+++++++ +|++.+++++
T Consensus 97 ~~al~~~~~~~~l----~~~~~g~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l 167 (423)
T 3ez1_A 97 SLELQGLVLTFAL----LHGVRGSTGPWLSQTPKMIVTVPGYDR----HFLLLQTLGFELLTVDMQSDG-PDVDAVERLA 167 (423)
T ss_dssp HHHHHHHHHHHHH----HTCCTTCSSCGGGGCCEEEEEESCCHH----HHHHHHHHTCEEEEEEEETTE-ECHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hccCCCccccccCCCCEEEEcCCCcHH----HHHHHHHcCCEEEeccCCCCC-CCHHHHHHHH
Confidence 99998 788776 34 5 6999999999984 455566779999999988765 8999999999
Q ss_pred --cCCceEEEE-ecccCcCcccccHH---HHHHHH-HhcCcEEEEeccccCCcc-------cCCC-------CCCCCcEE
Q 012718 206 --SRKTKLVVI-HHISNMLASILPIE---EIVHWS-HDVGAKVLVDACQSVPHM-------VVDV-------QGLDADFL 264 (458)
Q Consensus 206 --~~~~~~v~~-~~~~n~tG~~~~l~---~i~~l~-~~~~~~vivD~a~~~g~~-------~~~~-------~~~~~d~~ 264 (458)
.+++++|++ ++++||||.++|.+ +|+++| +++|+++|+|++|+.... +.++ ...+.+++
T Consensus 168 ~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (423)
T 3ez1_A 168 GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFV 247 (423)
T ss_dssp HSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEE
T ss_pred hhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEE
Confidence 568888864 58999999999966 888888 999999999999984221 1111 23457899
Q ss_pred EecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-HH--Hh
Q 012718 265 VASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LS--TI 340 (458)
Q Consensus 265 ~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~--~~ 340 (458)
+.|+||. +++.++|+++.++++++.+...... ...+++.....++..+++. .. ..
T Consensus 248 ~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~ 306 (423)
T 3ez1_A 248 FASTSKITFAGAGLGFVASSEDNIRWLSKYLGA---------------------QSIGPNKVEQARHVKFLTEYPGGLEG 306 (423)
T ss_dssp EEESTTTSCSSSSCEEEEECHHHHHHHHHHHHH---------------------SCSCCCHHHHHHHHHHHHHSTTHHHH
T ss_pred EeCchhhccCCcceEEEEeCHHHHHHHHHHHhh---------------------hccCCCHHHHHHHHHHHHhccchHHH
Confidence 9999995 4445599999998877666533221 1123444444444444443 11 01
Q ss_pred CHHHHHHHHH----HHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEecc-CCCCC
Q 012718 341 GMQKIHAYEM----ELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS-GHHCA 414 (458)
Q Consensus 341 g~~~~~~~~~----~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~-g~~~~ 414 (458)
.+.+.++.++ .+.+.|.+.|.+++ ++++..+. .+.++++.+++.+..++.+.+.++ ||.+++ |.+|.
T Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~------~g~~~~~~~~~~~~~~~~~~l~~~-gv~v~~~g~~~~ 379 (423)
T 3ez1_A 307 LMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK------GGYFISLDTAEPVADRVVKLAEAA-GVSLTPAGATYP 379 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS------BSSCEEEEESSSCHHHHHHHHHHT-TEECCCTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC------ccEEEEEECCCCcHHHHHHHHHHC-CcEEecCccccc
Confidence 1333444444 44444555555564 47776543 256899999866678888888888 999998 65553
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
... -..++++||+++.. +++++++++++|.++++++.
T Consensus 380 ~~~---~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 380 AGQ---DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp TTC---CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 210 01268999999864 99999999999999998764
No 133
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=250.18 Aligned_cols=377 Identities=12% Similarity=0.057 Sum_probs=259.8
Q ss_pred CCCccchhhhhcCC-CCcccccccCCCCeEEecCCCCCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHH
Q 012718 41 STDSVSLGHITRPD-FPILHQEVYGSKKLVYLDNAATSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARK 118 (458)
Q Consensus 41 ~~~~~~~~~~~r~~-f~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (458)
..+..++.+.+++. .|....+.+ + -|+++-..+.. |..+.+.+...+ +.+. ..+..++...+..+++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~--p--~~~~~~~~~~~~~~~~~~~~~~~~---n~~~--~~~~~~p~~~~lE~~v~~ 125 (481)
T 4e1o_A 55 PDSWDSIFGDIERIIMPGVVHWQS--P--HMHAYYPALTSWPSLLGDMLADAI---NCLG--FTWASSPACTELEMNVMD 125 (481)
T ss_dssp CCCHHHHHHHHHHHTGGGCCCTTS--T--TBCSSSCCCCCHHHHHHHHHHHHH---CCCC--SSTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCC--C--CeeEeCCCCCCHHHHHHHHHHHHh---Cccc--CCcCCCcHHHHHHHHHHH
Confidence 34444555555443 344333222 2 35665544433 443444444433 2222 233445566777888999
Q ss_pred HHHHHcCCCCC---------CcEEEeCChhHHHHHHHHHcCCCC---------------CCCCCEEEEcCCCCccchHHH
Q 012718 119 KVAAFINASDS---------GEIVFTKNATEAINLVAYSWGLSN---------------LKSGDEVILTVAEHHSAIVPW 174 (458)
Q Consensus 119 ~la~~~g~~~~---------~~v~~t~g~t~a~~~~~~~l~~~~---------------~~~g~~vl~~~~~~~s~~~~~ 174 (458)
.+++++|.+.. ...+||+|||+|+..++.+.+... ..+++.|+++..+|.+.
T Consensus 126 ~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~---- 201 (481)
T 4e1o_A 126 WLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSV---- 201 (481)
T ss_dssp HHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHH----
T ss_pred HHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHH----
Confidence 99999998753 157999999999999887763110 12567999999999965
Q ss_pred HHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 175 ~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
.+.+...|++++.+|+++++.+|+++|+++|+++ +.+|++++++|++|.+.|+++|+++|++||+++|+|++|+
T Consensus 202 ~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g 281 (481)
T 4e1o_A 202 EKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYA 281 (481)
T ss_dssp HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTG
T ss_pred HHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhH
Confidence 4445567999999999888999999999999763 6789999999999999999999999999999999999999
Q ss_pred CCcccCC-----CCCC-CCcEEEecccC-CCCCCceeEEEEecccc--ccCC---CccccCcceEeeecCCCCCCCCCCc
Q 012718 249 VPHMVVD-----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSDLL--SAMP---PFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 249 ~g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~g~G~l~~~~~~~--~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
.+....+ +... .+|++++++|| +++|.|+|+++++++.. +.+. .+..+... ...+......
T Consensus 282 ~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~-------~~~~~~~~~~ 354 (481)
T 4e1o_A 282 GTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS-------GVATDFMHWQ 354 (481)
T ss_dssp GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT-------TTSCCGGGGS
T ss_pred HHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc-------CCCCCccccc
Confidence 7654211 1111 25999999999 56699999999987532 2221 11111000 0000000011
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--ChHH
Q 012718 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--HPTD 394 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 394 (458)
.+.+.+ ...+.+.++++.+...|++++.++..++++++.+.|++++++++..++. .++++|++++. ...+
T Consensus 355 ~~~~r~--~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~------~~~v~f~~~~~~~~~~~ 426 (481)
T 4e1o_A 355 IPLSRR--FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH------LGLVVFRLKGPNSLTEN 426 (481)
T ss_dssp SSSCCC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCC------SSEEEEEESSCHHHHHH
T ss_pred ccCCCC--ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc------eeEEEEEeCCchHHHHH
Confidence 222222 2456777888888777899999999999999999999999999876542 67999998753 2467
Q ss_pred HHHHHhhhcCe-EeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 395 IATLLDQQYGV-ATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 395 ~~~~l~~~~gi-~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+.|.++ |+ .+.++. ++...++|+++. +.++++||+++++.|+++.+++.
T Consensus 427 l~~~L~~~-g~~~~~~~~---------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 427 VLKEIAKA-GRLFLIPAT---------IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHH-CSSBCEEEE---------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CeEEEEeeE---------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 88888888 74 433322 222568999976 44589999999999999988764
No 134
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.97 E-value=5.8e-30 Score=249.70 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=223.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
.-.++.+.+...+.+.+++..+. +.. +.+.++....+..+++++.+++++|.+ +.++++||++|+..++.+
T Consensus 29 ~~p~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~r~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l~~ 99 (398)
T 1gc0_A 29 VPPVYQTATFTFPTVEYGAACFA-----GEQ-AGHFYSRISNPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWT 99 (398)
T ss_dssp SCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHH
T ss_pred CCCccCCCccccCCHHHHHHhhc-----CCc-CCCcccCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHH
Confidence 33455555555555555543211 111 112222223466788999999999986 566677778999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+ +++||+|+++.++|++....+..+++..|++++.++.+ |++++++.+++++++|++++++||||.+.|++
T Consensus 100 ~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~ 170 (398)
T 1gc0_A 100 L----LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIA 170 (398)
T ss_dssp H----CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred H----hcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHH
Confidence 8 67999999999999988766665557789999999874 89999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCc--eeEEEEeccccc-cCCCccccCcceEeee
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTG--IGFLFGKSDLLS-AMPPFLGGGEMISDVF 304 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~ 304 (458)
+|.++|+++|+++|+|++|+.+.....+ ..++|+++.|+||++| |.+ +|+++++++.++ .+.+...+
T Consensus 171 ~i~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~-------- 241 (398)
T 1gc0_A 171 GVAKIARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD-------- 241 (398)
T ss_dssp HHHHHHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH--------
T ss_pred HHHHHHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc--------
Confidence 9999999999999999999976643322 3579999999999777 444 599999887554 34332221
Q ss_pred cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE--------------EeC
Q 012718 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR--------------IYG 370 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~--------------~~~ 370 (458)
+..++.+.....++..+++.+ ....++..++.+.+.+.|.+++.++ +..
T Consensus 242 ------------~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~ 304 (398)
T 1gc0_A 242 ------------MTGAVLSPHDAALLMRGIKTL-----NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304 (398)
T ss_dssp ------------HTCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC------------
T ss_pred ------------cCCCCCCHHHHHHHHhccchH-----HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHH
Confidence 012455655555544455433 3444555666667777776654433 222
Q ss_pred CCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---CCC------CC------hhh--HhhcCC-CCeEEEeeC
Q 012718 371 PKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS---GHH------CA------QPL--HRYLGV-NASARASLH 432 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~---g~~------~~------~~~--~~~~g~-~~~lRis~~ 432 (458)
+.. ...++++.|.+++. ..++.+.+.+. ++..+. |+. |. .+. ...+|. ++.+|+|++
T Consensus 305 ~~~---~~~~~~~~~~l~~~-~~~~~~~l~~~-~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g 379 (398)
T 1gc0_A 305 QQM---SQPGGMIAFELKGG-IGAGRRFMNAL-QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG 379 (398)
T ss_dssp -------CCTTEEEEEETTH-HHHHHHHHHHC-SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC
T ss_pred hhC---CCCceEEEEEECCC-HHHHHHHHHhC-CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC
Confidence 110 13477999998752 34556666655 876654 421 21 111 123444 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 012718 433 FYNTKEDVDEFIHALNET 450 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~ 450 (458)
..+++++|+.+.++|+++
T Consensus 380 ~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 380 LEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999999988764
No 135
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.97 E-value=9.2e-29 Score=240.61 Aligned_cols=334 Identities=17% Similarity=0.123 Sum_probs=233.1
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+.... . . +......+++++.+++++|.+ +.|+++ +||+|+++++.+++ +++||
T Consensus 15 ~~~~~~~a~~~~l~~~~--~---~----~~~~~~~~~l~~~la~~~~~~--~~i~~~-sGt~al~~~l~~l~---~~~gd 79 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ--W---W----RMGGDEVNSFEREFAAHHGAA--HALAVT-NGTHALELALQVMG---VGPGT 79 (388)
T ss_dssp CCHHHHHHHHHHHHTSC--C---B----TTTCSHHHHHHHHHHHHTTCS--EEEEES-CHHHHHHHHHHHTT---CCTTC
T ss_pred CCHHHHHHHHHHHHcCC--e---e----ecCCHHHHHHHHHHHHHhCCC--eEEEeC-CHHHHHHHHHHHcC---CCCcC
Confidence 44889999988886521 0 0 111345678999999999986 245555 55999999999873 67899
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|++.. ..++..|++++.++++++ +.+|++++++.+++++++|+ ++|+||.+.|+++|.++|+++
T Consensus 80 ~Vi~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~ 152 (388)
T 1b9h_A 80 EVIVPAFTFISSS----QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADT 152 (388)
T ss_dssp EEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred EEEECCCccHHHH----HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHc
Confidence 9999999999664 445677999999999865 78899999999988888877 789999999999999999999
Q ss_pred CcEEEEeccccCCccc--CCCCCCCCcEEEeccc--CCCCCCceeEEEEecc-c--cccCCCccccCcceEeeecCCCCC
Q 012718 238 GAKVLVDACQSVPHMV--VDVQGLDADFLVASSH--KMCGPTGIGFLFGKSD-L--LSAMPPFLGGGEMISDVFLDHSTF 310 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~--~~~~~~~~d~~~~s~~--K~~gp~g~G~l~~~~~-~--~~~l~~~~~g~~~~~~~~~~~~~~ 310 (458)
|+++|+|++|+.|... .++..++ |++++|+| |.+++..+|+++.+++ + ++.+..... ++..
T Consensus 153 ~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~-~~~~---------- 220 (388)
T 1b9h_A 153 GVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHS-CGRP---------- 220 (388)
T ss_dssp TCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTB-TTCC----------
T ss_pred CCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHh-CCCC----------
Confidence 9999999999987653 2333333 56666655 7665544799998876 4 343321111 1100
Q ss_pred CCCCCcc---CCCC---CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEE
Q 012718 311 ADPPSRF---EAGT---PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 311 ~~~~~~~---~~gt---~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~ 384 (458)
..+.+| ..|+ ++..+.+++...++ .+++..++.+++++++.+.|++++++++..+.+......+.+++
T Consensus 221 -~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 221 -RDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp -TTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred -ccCccceeecccccCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence 001111 1233 34333333322222 25667788888999999999998888887643210011246899
Q ss_pred EEeCCC---ChHHHHHHHhhhcCeEeccCCCCCh--hhHhhcCC-------------------CCeEEEeeCCCC-CHHH
Q 012718 385 FNVENI---HPTDIATLLDQQYGVATRSGHHCAQ--PLHRYLGV-------------------NASARASLHFYN-TKED 439 (458)
Q Consensus 385 ~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~--~~~~~~g~-------------------~~~lRis~~~~~-t~~d 439 (458)
+.+++. +..++.+.|.++ ||.++++..... +.+..++. .+.+|++++..+ |++|
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~ed 373 (388)
T 1b9h_A 295 FRIPGLTEERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPE 373 (388)
T ss_dssp EECTTCCHHHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred EEeCCcCcccHHHHHHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHH
Confidence 999864 467899999988 999987643211 11111110 247999999989 9999
Q ss_pred HHHHHHHHHHHHHh
Q 012718 440 VDEFIHALNETVSF 453 (458)
Q Consensus 440 i~~l~~~l~~~~~~ 453 (458)
|+++++.|++++++
T Consensus 374 i~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 374 LHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 136
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.97 E-value=5.5e-29 Score=242.54 Aligned_cols=322 Identities=15% Similarity=0.182 Sum_probs=235.8
Q ss_pred eEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
.-|+|..+ .|..++.+.+++.+.+......... ...+..+++++.+++++|. +++++++|+++|
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~la~~~g~---~~v~~~~~gt~a 105 (392)
T 3ruy_A 36 NRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRA-------FHSDQLGPWYEKVAKLTNK---EMVLPMNTGAEA 105 (392)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT-------SEETTHHHHHHHHHHHHTC---SEEEEESSHHHH
T ss_pred CEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHHhcCC---CEEEEeCcHHHH
Confidence 34566543 2335789999999887653221110 1134456788999999983 399999999999
Q ss_pred HHHHHHHcCCC-----CC-CCCCEEEEcCCCCccchHHHHHHHHHcC---------CeEEEEeCCCCCCCCHHHHHHhhc
Q 012718 142 INLVAYSWGLS-----NL-KSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDDESPDLDKLKEMLS 206 (458)
Q Consensus 142 ~~~~~~~l~~~-----~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g---------~~~~~v~~~~~~~~d~~~l~~~l~ 206 (458)
+..++..+... .. ..+++|++..++|++.......+....+ ..+..++.+ |+++++++++
T Consensus 106 ~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~ 180 (392)
T 3ruy_A 106 VETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAIT 180 (392)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhc
Confidence 99999876210 00 2367999999999987654433211100 124445443 8999999999
Q ss_pred CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC--C
Q 012718 207 RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP--T 275 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp--~ 275 (458)
+++++|++++++||||.+.| +++|.++|++||+++|+|++|+ ++.. ..+.....+|+++ ++|.+++ .
T Consensus 181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~--~SK~l~gG~~ 258 (392)
T 3ruy_A 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYI--LGKALGGGVF 258 (392)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTTS
T ss_pred cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEE--EchhhhCChh
Confidence 99999999999999999999 9999999999999999999995 3321 1222234578775 5696655 3
Q ss_pred ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 276 GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 276 g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
.+|++++++++++.+.+...+. ..+.+...+.++.++++.+.. +++.+++++++++
T Consensus 259 ~~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~ 314 (392)
T 3ruy_A 259 PISCAAANRDILGVFEPGSHGS---------------------TFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEK 314 (392)
T ss_dssp CCEEEEECHHHHTTCCTTSSCC---------------------SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred hhEEEEECHHHHhhhccCCcCC---------------------CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Confidence 4899999998877776543211 235677777777788877654 5778889999999
Q ss_pred HHHHHhcC--CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 356 LYENLLSI--PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 356 l~~~L~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+.+.|+++ +.+....+ .+.++++.+++ +..++.+.|.++ ||.++++. ++++|++++.
T Consensus 315 l~~~L~~~~~~~~~~~~~-------~g~~~~~~~~~-~~~~l~~~l~~~-gi~v~~~~------------~~~iRi~~~~ 373 (392)
T 3ruy_A 315 LVGQLKEIDNPMITEVRG-------KGLFIGIELNE-PARPYCEQLKAA-GLLCKETH------------ENVIRIAPPL 373 (392)
T ss_dssp HHHHHTTCCCTTEEEEEE-------ETTEEEEEESS-CSHHHHHHHHTT-TEECCCBT------------TTEEEECCCT
T ss_pred HHHHHHHhcCCCceEEEe-------eeeEEEEEEcc-hHHHHHHHHHHC-CcEEecCC------------CCEEEEECCC
Confidence 99999887 33443322 26788888876 678899999988 99998765 6799999998
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 012718 434 YNTKEDVDEFIHALNETV 451 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~ 451 (458)
.++++|+++++++|++++
T Consensus 374 ~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 374 VISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 899999999999999876
No 137
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.97 E-value=4.1e-29 Score=241.93 Aligned_cols=320 Identities=16% Similarity=0.166 Sum_probs=227.6
Q ss_pred CeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|.++. +.+++.+.+++.+.+.... +... .+. .....++++.+++++|.+ +++++|+|+|+
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~-~~~~-~y~-----~~~~~~l~~~la~~~g~~--~~v~~~~g~t~ 97 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL-HVSN-LYE-----NPWQEELAHKLVKHFWTE--GKVFFANSGTE 97 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS-CCCT-TBC-----CHHHHHHHHHHHHTSSSC--EEEEEESSHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcc-ccCc-ccC-----CHHHHHHHHHHHhhcCCC--CeEEEeCchHH
Confidence 3456665432 2278999999999887531 1111 111 234567899999999983 49999999999
Q ss_pred HHHHHHHHcCCCCC---CCC-CEEEEcCCCCccchHHHHHHHHH----cCCe-----EEEEeCCCCCCCCHHHHHHhhcC
Q 012718 141 AINLVAYSWGLSNL---KSG-DEVILTVAEHHSAIVPWQLVAQK----TGAN-----LKFLNLNDDESPDLDKLKEMLSR 207 (458)
Q Consensus 141 a~~~~~~~l~~~~~---~~g-~~vl~~~~~~~s~~~~~~~~a~~----~g~~-----~~~v~~~~~~~~d~~~l~~~l~~ 207 (458)
|+.+++.++.. .. ++| |+|++++++|++....+...... .|.. +..++. .|++++++.+++
T Consensus 98 a~~~~~~~~~~-~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~ 171 (375)
T 2eh6_A 98 SVEAAIKLARK-YWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDE 171 (375)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCT
T ss_pred HHHHHHHHHHH-HhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcC
Confidence 99999875210 02 567 99999999999876544332100 0111 444443 389999999988
Q ss_pred CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--CCCCCCC--CcEEEecccCCCC-CCce
Q 012718 208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQGLD--ADFLVASSHKMCG-PTGI 277 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g-p~g~ 277 (458)
++++|++++++||||.+.| +++|.++|+++|+++|+|++|+ ++..+ +++...+ +|+++ ++|.++ +.++
T Consensus 172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s--~SK~~~~g~~~ 249 (375)
T 2eh6_A 172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA--LAKGLGGGVPI 249 (375)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSCC
T ss_pred CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE--EcccccCCCCe
Confidence 9999999999999999988 9999999999999999999999 55432 2233334 78875 559555 4559
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLY 357 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~ 357 (458)
|++++++++++.+.+...+ ...++ +.....++.++++.+. ++.++++++++++.
T Consensus 250 G~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~ 303 (375)
T 2eh6_A 250 GAILAREEVAQSFTPGSHG--------------------STFGG-NPLACRAGTVVVDEVE-----KLLPHVREVGNYFK 303 (375)
T ss_dssp EEEEEEHHHHTTCCTTSCC--------------------CSSTT-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHhhhcCCCCC--------------------CCCCC-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 9999999887777642111 11133 4444444445565543 67788889999999
Q ss_pred HHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 358 ENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 358 ~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
+.|++++...+ . ..+.++++.+++ +..++.+.|.++ ||.+.++. ++++|++++.++++
T Consensus 304 ~~L~~~~~~~~-~-------~~g~~~~~~~~~-~~~~~~~~l~~~-gi~~~~~~------------~~~iRi~~~~~~~~ 361 (375)
T 2eh6_A 304 EKLKELGKGKV-K-------GRGLMLGLELER-ECKDYVLKALEK-GLLINCTA------------GKVLRFLPPLIIQK 361 (375)
T ss_dssp HHHHHTTSSEE-E-------EETTEEEEECSS-CCHHHHHHHHHT-TEECEEET------------TTEEEECCCTTCCH
T ss_pred HHHHHHhcCCc-e-------EEEEEEEEEEcC-cHHHHHHHHHHC-CCEEecCC------------CCEEEEECCCCCCH
Confidence 99988743211 1 226788898875 467899999887 99998653 57899999988999
Q ss_pred HHHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNETV 451 (458)
Q Consensus 438 ~di~~l~~~l~~~~ 451 (458)
+|+++++++|++++
T Consensus 362 ~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 362 EHIDRAISVLREIL 375 (375)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998763
No 138
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.97 E-value=1.2e-29 Score=249.42 Aligned_cols=332 Identities=9% Similarity=0.041 Sum_probs=233.9
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHH-hccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEE
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVF 134 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~ 134 (458)
.+++.|..+. ..++++.+.+++.+.... ...+. ......++++++++++ +.+..++|++
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~----------~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~ 107 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYA----------PIAGIPDFLCAAEKECFGNFRPEGHIRSIA 107 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCC----------CTTCCHHHHHHHHHHHHGGGCCSSEEEEEE
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCC----------CCCChHHHHHHHHHHHhcccCccccccEEE
Confidence 4678888875 336778888877664332 11111 1112346777777765 3221128999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC----Cc
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR----KT 209 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~----~~ 209 (458)
|+|+++|+..++.++ +++||+|+++.|+|+ .+...++..|++++.++++ +++.+|++.+++.+++ ++
T Consensus 108 t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 108 TAGGTGGIHHLIHNY----TEPGDEVLTADWYWG----AYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp ESHHHHHHHHHHHHH----SCTTCEEEEESSCCT----HHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCS
T ss_pred CCchHHHHHHHHHHh----cCCCCEEEECCCCch----hHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCC
Confidence 999999999999988 789999999999998 4466677789999999985 4568899999999875 56
Q ss_pred e-EEEEecc-cCcCcccccHH---HHHHHHH------hcCcEEEEeccccCCcc------c--CCCCCCCCc---EEEec
Q 012718 210 K-LVVIHHI-SNMLASILPIE---EIVHWSH------DVGAKVLVDACQSVPHM------V--VDVQGLDAD---FLVAS 267 (458)
Q Consensus 210 ~-~v~~~~~-~n~tG~~~~l~---~i~~l~~------~~~~~vivD~a~~~g~~------~--~~~~~~~~d---~~~~s 267 (458)
+ +++++++ +||||.++|.+ +|+++|+ ++|+++|+|++|..... + ........+ +++.|
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 259 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYS 259 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEe
Confidence 5 8889999 99999999955 5556666 89999999999862111 1 112222333 78889
Q ss_pred ccCCCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH---H
Q 012718 268 SHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---T 339 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---~ 339 (458)
+||.+|.+| +|++++ ++++++.+........ +...++++.....++..+++... .
T Consensus 260 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 322 (418)
T 3rq1_A 260 LSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTS-----------------RATWSNICRPAMRTMANIVADPAKFKE 322 (418)
T ss_dssp STTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHH-----------------HHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHH-----------------hhccCCCchHHHHHHHHHhCCHHHHHH
Confidence 999888777 899998 7777666553221000 00012355555555555553211 0
Q ss_pred --hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 340 --IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 340 --~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
....+++++++++++++.+.|+++ ++++..+. .+.++++.++ +..++.+.|.++ ||.+.+|
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~~~~~~~~~~--~~~~~~~~l~~~-gi~v~~g------- 385 (418)
T 3rq1_A 323 YEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYR------GGFFITIPTD--SANAICEELKKE-HIYVIAL------- 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCC------SSSEEEEECT--THHHHHHHHHHT-TEECEEC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCC------ceEEEEcCCC--CHHHHHHHHHhC-CEEEecC-------
Confidence 124567788888999999999887 77665443 1446676664 577899988877 9999886
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+++|||++ ..+++++++++++|+++++++.+
T Consensus 386 ------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~~ 417 (418)
T 3rq1_A 386 ------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLGK 417 (418)
T ss_dssp ------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTTC
T ss_pred ------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHhc
Confidence 367999987 36999999999999999988754
No 139
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.97 E-value=2.1e-30 Score=253.75 Aligned_cols=347 Identities=16% Similarity=0.139 Sum_probs=246.1
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHH--hccCCCCCcchhhhHHHHHHH-HHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYE-LARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
.+++.|..+... .++.+.+++.+.+.. ...++.. .+..+.......+ .+++.+++++|.++ ..+++++|++|+
T Consensus 23 ~~~i~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~-~~~~g~~~~~~~e~~ar~~la~~~g~~~--~~i~~~sGt~a~ 98 (407)
T 2dkj_A 23 REGLELIASENF-VSKQVREAVGSVLTNKYAEGYPGA-RYYGGCEVIDRVESLAIERAKALFGAAW--ANVQPHSGSQAN 98 (407)
T ss_dssp HTSEECCTTCCC-CCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHH
T ss_pred hcceeeccCCCC-CCHHHHHHHHhhhhcCcccCCCcc-cccCCchHHHHHHHHHHHHHHHHhCCCc--ceEEecchHHHH
Confidence 345666555544 489999999888754 1222211 1111222223344 47789999999874 334555567799
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC--eEEEEeCCC-CCCCCHHHHHHhhcC-CceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA--NLKFLNLND-DESPDLDKLKEMLSR-KTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~ 218 (458)
..++.++ +++||+|++++++|++...... .++..|. ..+.+++++ ++.+|++++++.+++ ++++|++++++
T Consensus 99 ~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~ 173 (407)
T 2dkj_A 99 MAVYMAL----MEPGDTLMGMDLAAGGHLTHGS-RVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASA 173 (407)
T ss_dssp HHHHHHH----CCTTCEEEEECGGGTCCGGGTC-TTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHHh----cCCCCEEEEecccccCccchHH-HHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccc
Confidence 9999988 6899999999999987631111 1122244 445554443 577899999999985 88999998888
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCC---CCCcEEEecccCCC-CCCceeEEEEe-ccccccCCCc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG---LDADFLVASSHKMC-GPTGIGFLFGK-SDLLSAMPPF 293 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~~-gp~g~G~l~~~-~~~~~~l~~~ 293 (458)
|+ ...|+++|.++|+++|+++|+|++|+.|....+... ...|++++|+||++ |+.| |+++++ +++++.+.+.
T Consensus 174 ~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~ 250 (407)
T 2dkj_A 174 YP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKL 250 (407)
T ss_dssp CC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHH
T ss_pred cC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhh
Confidence 86 778999999999999999999999987543222111 13799999999954 5665 999999 6776655433
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
.. .+..++++...+.++.++++.+...+++++.++.+++++++.+.|+++ ++++..++.
T Consensus 251 ~~--------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 309 (407)
T 2dkj_A 251 IF--------------------PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGT 309 (407)
T ss_dssp HT--------------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred hc--------------------ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCC
Confidence 21 122457777777778888888655568899999999999999999988 888875422
Q ss_pred CCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHAL 447 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~l 447 (458)
.++++++.++. .+..++.+.|.++ ||.++++..+.... ..+.++++|++++.+ .+++|+++++++|
T Consensus 310 -----~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~--~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l 381 (407)
T 2dkj_A 310 -----DNHLFLVDLRPKGLTGKEAEERLDAV-GITVNKNAIPFDPK--PPRVTSGIRIGTPAITTRGFTPEEMPLVAELI 381 (407)
T ss_dssp -----SSSEEEEECGGGTCCHHHHHHHHHHT-TEECEECCCTTCSS--CTTTCSEEEEECHHHHHTTCCGGGHHHHHHHH
T ss_pred -----CceEEEEECcccCCCHHHHHHHHHHc-CceecCCcCccccc--cccCCCceeeecccccccCCCHHHHHHHHHHH
Confidence 26788998873 4678899999877 99999876321000 011257899999753 6899999999999
Q ss_pred HHHHHh
Q 012718 448 NETVSF 453 (458)
Q Consensus 448 ~~~~~~ 453 (458)
++++++
T Consensus 382 ~~~~~~ 387 (407)
T 2dkj_A 382 DRALLE 387 (407)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 140
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.97 E-value=5.5e-29 Score=242.77 Aligned_cols=312 Identities=14% Similarity=0.138 Sum_probs=229.0
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
++.++.+.+++.+.+....... . .+ ..+..+++++.++++++.+.+ ++++|+|+++|+.+++.++. .+.+
T Consensus 60 g~~~~~v~~a~~~~~~~~~~~~-~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~~a~~~al~~~~--~~~~ 129 (395)
T 1vef_A 60 GHGNPEVVEAVKRQAETLMAMP-Q-TL-----PTPMRGEFYRTLTAILPPELN-RVFPVNSGTEANEAALKFAR--AHTG 129 (395)
T ss_dssp CBTCHHHHHHHHHHHHHCCCCC-T-TS-----CCHHHHHHHHHHHHTSCTTEE-EEEEESSHHHHHHHHHHHHH--HHHS
T ss_pred CCCCHHHHHHHHHHHHhCCCCc-c-cc-----CCHHHHHHHHHHHHhcCCCcC-EEEEcCcHHHHHHHHHHHHH--HHhC
Confidence 5688999999999987632111 1 11 245667899999999987554 89999999999999998651 1246
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCe------------EEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
|+.|++++++|++....+. ...|.+ +..++. .|++++++.+++++++|++++++|+||.+
T Consensus 130 ~~~vi~~~~~y~~~~~~~~---~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 201 (395)
T 1vef_A 130 RKKFVAAMRGFSGRTMGSL---SVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVR 201 (395)
T ss_dssp CCEEEEETTCCCCSSHHHH---HTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSE
T ss_pred CCeEEEEcCCcCCCchhhh---hhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccCEEEEEEeCccCCCCcc
Confidence 8899999999987654332 223443 333432 38999999999889999999999999999
Q ss_pred cc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC-CceeEEEEeccccccCCCcc
Q 012718 225 LP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 225 ~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~ 294 (458)
.| +++|.++|+++|+++|+|++|+ ++.. +++.....+|++ |+||.+++ .++|++++++++++.+....
T Consensus 202 ~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~ 279 (395)
T 1vef_A 202 PATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG 279 (395)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC
Confidence 88 9999999999999999999998 3221 112223357876 67996654 45999999998777665411
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ....+++.....++.++++.+.. +.+.++++++++++.+.|+++.. .+....
T Consensus 280 ~---------------------~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~-- 332 (395)
T 1vef_A 280 H---------------------GTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREV-- 332 (395)
T ss_dssp S---------------------CCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEE--
T ss_pred c---------------------CCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc-CceEEE--
Confidence 0 01224667777777778887754 45678888999999999988732 111001
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+.++++.+++ +..++.+.|. ++ ||.++++. ++++|++++.+++++|+++++++|++++
T Consensus 333 --~~~g~~~~~~~~~-~~~~l~~~l~~~~-gi~v~~~~------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 333 --RGMGLMVGLELKE-KAAPYIARLEKEH-RVLALQAG------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp --EEETTEEEEEESS-CSHHHHHHHHHHH-CEECEESS------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred --EEEEEEEEEEEcC-hHHHHHHHHHHHC-CeEEecCC------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1225688998875 3678999998 77 99998753 5799999998899999999999999876
No 141
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.97 E-value=1.5e-29 Score=245.95 Aligned_cols=299 Identities=20% Similarity=0.171 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
.....+++++.+++++|.+ ++++++||++|++.++.++ +++||+|+++.++|++....+....+..|++++.+
T Consensus 64 ~~~~~~~l~~~la~~~g~~---~~~~~~sGt~A~~~al~~~----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v 136 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAA---FGRAFSSGMAAADCALRAM----LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEE
T ss_pred CChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEe
Confidence 3455778999999999986 7899999999999999988 68999999999999987766666667789999999
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
+.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.. .+....++|+++.|+
T Consensus 137 ~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~~~~~~~di~~~S~ 210 (392)
T 3qhx_A 137 ALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQPLSLGADVVLHST 210 (392)
T ss_dssp CTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CCGGGGTCSEEEEET
T ss_pred CCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CChHHhCCcEEEEcC
Confidence 876 89999999999999999999999999999999999999999999999999986643 233356799999999
Q ss_pred cCCCCCCc---eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 269 HKMCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 269 ~K~~gp~g---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
||++|++| +|+++.++ ++.+.+....... ..+.+......+...++. +..
T Consensus 211 sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~---------------------g~~~~~~~~~~~~~~l~~-----l~~ 264 (392)
T 3qhx_A 211 TKYIGGHSDVVGGALVTNDEELDQSFAFLQNGA---------------------GAVPGPFDAYLTMRGLKT-----LVL 264 (392)
T ss_dssp TTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH---------------------CCCCCHHHHHHHHHHHTT-----HHH
T ss_pred ccccCCCCCceEEEEEECcHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHhhhhH-----HHH
Confidence 99888766 89999885 5555443221110 123333333333223332 344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~ 411 (458)
..++..++++++.+.|++.+.+... .+.-... ...+++++|.+++ .....+...+... ++.++.|+
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~-~~~~s~G~ 343 (392)
T 3qhx_A 265 RMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIF-ILAESLGS 343 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSS-EECSCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCc-eECCCCCC
Confidence 5566678888889999888877533 2221100 1236699999986 3345666666655 78888777
Q ss_pred CCChhhH------h-----hcCC-CCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 412 HCAQPLH------R-----YLGV-NASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 412 ~~~~~~~------~-----~~g~-~~~lRis~~~~~t~~di~~l~~~l 447 (458)
.|+...+ . .+|. ++.||+|++..+++++|+.+.++|
T Consensus 344 ~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 344 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp SSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 6542111 1 1222 678999999877777777666654
No 142
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.97 E-value=1.6e-28 Score=239.68 Aligned_cols=301 Identities=22% Similarity=0.244 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+++++|.+ ++++++|+++|+..++.++ +++||+|+++.+.|++....+...++..|++++.++
T Consensus 61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 133 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI----LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN 133 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHH----hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 455678999999999985 6788888899999999988 689999999999999877666656788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh-cCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
.+ |++++++.+++++++|++++++||||.+.|+++|+++|++ +|+++|+|++|+.+.....+ ..+.|+++.|+
T Consensus 134 ~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~S~ 207 (404)
T 1e5e_A 134 TA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-DFGVDVVVHSA 207 (404)
T ss_dssp TT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-GGTCSEEEEET
T ss_pred CC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-ccCCEEEEEcC
Confidence 76 7889999999999999999999999999999999999999 99999999999977632112 35799999999
Q ss_pred cCCCCC-Cc--eeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 269 HKMCGP-TG--IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 269 ~K~~gp-~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
||+++. .+ +|+++++++.++ .+.+...++ ..++.+.....++..+++. ++.
T Consensus 208 sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~--------------------~g~~~~~~~~~~~~~~l~~-----~~~ 262 (404)
T 1e5e_A 208 TKYINGHTDVVAGLICGKADLLQQIRMVGIKDI--------------------TGSVISPHDAWLITRGLST-----LNI 262 (404)
T ss_dssp TTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC--------------------CCCCCCHHHHHHHHHHHTT-----HHH
T ss_pred ccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC--------------------CCCCCCHHHHHHHHHhHhH-----HHH
Confidence 997764 44 499999998766 555433221 0123444344444444432 333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---C
Q 012718 345 IHAYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATRS---G 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~---g 410 (458)
..++..++.+.+.+.|++.+.+. +..+.-.. ....++++.|.+++. ..++.+.+.+. ||.+.. |
T Consensus 263 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~-~i~~~~~s~G 340 (404)
T 1e5e_A 263 RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNL-KLITLAVSLG 340 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTC-SSSEESSCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhC-CCceeccCCC
Confidence 44555667777777777665443 22221000 012377888888752 24555666665 884433 2
Q ss_pred ------CCCChhhHh--------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 411 ------HHCAQPLHR--------YLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 411 ------~~~~~~~~~--------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+|....+. ..|. ++++|+|++. +|++++++.|+++++.+
T Consensus 341 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 341 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 234332221 2343 5899999995 89999999999888764
No 143
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.97 E-value=6.5e-29 Score=241.90 Aligned_cols=345 Identities=17% Similarity=0.167 Sum_probs=239.0
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++++.+..+.. ..++.+.+++.+.+.... +. ......+++++.+++++|.+ ++++++|||+|+..+
T Consensus 22 ~~~~~l~~~~p-~~~~~~~~a~~~~~~~~~-------~~---~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~ 87 (391)
T 3dr4_A 22 SDLPRISVAAP-RLDGNERDYVLECMDTTW-------IS---SVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLA 87 (391)
T ss_dssp ------CCCCC-CCCSSHHHHHHHHHHHTC-------CS---SCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH
T ss_pred CCCceeccCCC-CCCHHHHHHHHHHHHcCC-------cc---CCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHH
Confidence 45566666655 455778888887775421 11 11355678999999999987 789999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
+.++ .+++||+|+++.++|++.. ..++..|++++.++++ +++.+|++++++.+++++++|++ +||||..
T Consensus 88 l~~~---~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~ 157 (391)
T 3dr4_A 88 LVAM---GIGPGDEVIVPSLTYIASA----NSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQI 157 (391)
T ss_dssp HHHH---TCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCC
T ss_pred HHHc---CCCCcCEEEECCCchHHHH----HHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCCh
Confidence 9988 3689999999999999664 4455679999999998 45788999999999988888884 5789999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccCCcccCC--CCCCCCcEEEec--ccCCCCCCceeEEEEecc-ccccCCCccccCcc
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFLVAS--SHKMCGPTGIGFLFGKSD-LLSAMPPFLGGGEM 299 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s--~~K~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~ 299 (458)
.|+++|.++|+++|+++|+|++|+.|....+ ...+ .|+++.| .+|++++..+|+++.+++ +.+.+.....++..
T Consensus 158 ~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~ 236 (391)
T 3dr4_A 158 CDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMD 236 (391)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCC
T ss_pred hhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998776333 2222 3677777 459776633788877654 44444433222211
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC--CCCCcC
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP--KPSEHV 377 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~--~~~~~~ 377 (458)
.. ..+......+.. ....+.+++......+++++.++.+++.+++.+.|.++ ++++..+ ... .
T Consensus 237 ~~------~~~~~~~~g~~~------~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~ 301 (391)
T 3dr4_A 237 PN------RRYWFPIVGFNY------RMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALT--G 301 (391)
T ss_dssp TT------STTCCSSCCCBC------BCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTT--S
T ss_pred CC------Cccccccccccc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCC--C
Confidence 00 000000001111 12233344444444567889999999999999999988 7777655 221 1
Q ss_pred ccc-cEEEEEeC---CCChHHHHHHHhhhcCeEeccCC---CCChhhHhh-cC--------CCCeEEEeeCCCCCHHHHH
Q 012718 378 QRA-ALCSFNVE---NIHPTDIATLLDQQYGVATRSGH---HCAQPLHRY-LG--------VNASARASLHFYNTKEDVD 441 (458)
Q Consensus 378 ~~~-~~v~~~~~---~~~~~~~~~~l~~~~gi~~~~g~---~~~~~~~~~-~g--------~~~~lRis~~~~~t~~di~ 441 (458)
... .++++.++ +.+..++.+.|.++ ||.++++. +|.+..... .+ ....+|++++.++|++||+
T Consensus 302 ~~~~~~~~i~~~~~~~~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~ 380 (391)
T 3dr4_A 302 RHVFWMYTVRLGEGLSTTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADID 380 (391)
T ss_dssp CCCCSSEEEEECSSCSSCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred cceeEEEEEEECCccchhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHH
Confidence 122 35677776 45688999999998 99999875 333322110 00 0468999999999999999
Q ss_pred HHHHHHHHHH
Q 012718 442 EFIHALNETV 451 (458)
Q Consensus 442 ~l~~~l~~~~ 451 (458)
++++.|++++
T Consensus 381 ~~~~~l~~~l 390 (391)
T 3dr4_A 381 RVIAALDQVL 390 (391)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 144
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=247.07 Aligned_cols=325 Identities=16% Similarity=0.212 Sum_probs=227.2
Q ss_pred cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-----CCC-CCCcEEEeCChhHHHHHHHHHcCCCC
Q 012718 80 PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----NAS-DSGEIVFTKNATEAINLVAYSWGLSN 153 (458)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----g~~-~~~~v~~t~g~t~a~~~~~~~l~~~~ 153 (458)
|..+.+++.+.+...... ...++.......++|+++++++ |.+ ..++|++|+|+++++.+++.++
T Consensus 103 P~~~~~~~~~~l~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l---- 173 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGN-----SLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL---- 173 (498)
T ss_dssp CHHHHHHHHHHHHHC---------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhccCC-----CCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH----
Confidence 555666666666543210 0111122233345666666665 343 2249999999999999999988
Q ss_pred CCCCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcC-----CceEEEEecccCcCc
Q 012718 154 LKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR-----KTKLVVIHHISNMLA 222 (458)
Q Consensus 154 ~~~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG 222 (458)
.++|| .|+++.|+|+ .+...++..|++++.++++++ +.+|+++|++.+++ ++++|++++++||||
T Consensus 174 ~~~gd~~~d~Vlv~~p~y~----~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG 249 (498)
T 3ihj_A 174 VSGGGKSRTGVMIPIPQYP----LYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249 (498)
T ss_dssp CCCCGGGSEEEEEEESCCT----HHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTC
T ss_pred cCCCCCCCCEEEEeCCCch----hHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCC
Confidence 56664 9999999999 445566677999999998854 57899999999976 589999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCccc-----CCCCC----C-------CCcEEEecccCCC-CCCc--eeEE
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQG----L-------DADFLVASSHKMC-GPTG--IGFL 280 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~~~~----~-------~~d~~~~s~~K~~-gp~g--~G~l 280 (458)
.+++ +++|+++|+++|+++|+|++|+..... ..+.. . ...+++.|+||.+ |.+| +||+
T Consensus 250 ~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~ 329 (498)
T 3ihj_A 250 QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYM 329 (498)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEE
Confidence 9998 667999999999999999999854321 11111 0 1236788999977 6566 8999
Q ss_pred EE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH-----------HHHHhCHHHHH
Q 012718 281 FG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-----------YLSTIGMQKIH 346 (458)
Q Consensus 281 ~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-----------~~~~~g~~~~~ 346 (458)
++ ++++++.+..... ...+++.....++..+++ ++.+ ..+++
T Consensus 330 ~~~~~~~~l~~~l~~~~~----------------------~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~--~~~~~ 385 (498)
T 3ihj_A 330 EVINLHPEIKGQLVKLLS----------------------VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE--KESVL 385 (498)
T ss_dssp EEESCCHHHHHHHHHHHH----------------------HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH--HHHHH
T ss_pred EEecCCHHHHHHHHHHHh----------------------ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHH--HHHHH
Confidence 84 6666555442211 012455555666655552 2222 46778
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeC------------CCChHHH--HHHHhhhcCeEeccCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVE------------NIHPTDI--ATLLDQQYGVATRSGH 411 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~------------~~~~~~~--~~~l~~~~gi~~~~g~ 411 (458)
++++++++++.+.|+++|++++..+. ++ ++++++. +.+.+++ .+.|.+. ||.+.+|.
T Consensus 386 ~~l~~~~~~l~~~L~~~~g~~~~~p~-------gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~-gI~v~pG~ 457 (498)
T 3ihj_A 386 GNLAKKAKLTEDLFNQVPGIHCNPLQ-------GAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEET-GICVVPGS 457 (498)
T ss_dssp HHHHHHHHHHHHHHHTSTTEECCCCC-------BSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHH-CBCCEEGG
T ss_pred HHHHHHHHHHHHHHhcCCCcEecCCC-------eEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHC-CEEEEeCc
Confidence 88999999999999999999887554 44 5555553 3344453 4455566 99999998
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.|..+ ..++++|+++. .+++++++++++|.++++++.+
T Consensus 458 ~f~~~-----~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 458 GFGQR-----EGTYHFRMTIL--PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp GTCCC-----TTCCBEEEECC--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-----CCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 66432 12579999996 7999999999999999987754
No 145
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.97 E-value=1.7e-29 Score=248.94 Aligned_cols=303 Identities=15% Similarity=0.143 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH--HHHHHHcCCCCCC--C----------CCEEEEcCCCCccchHHHHH
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAI--NLVAYSWGLSNLK--S----------GDEVILTVAEHHSAIVPWQL 176 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~--~~~~~~l~~~~~~--~----------g~~vl~~~~~~~s~~~~~~~ 176 (458)
....++|++++++++++++ +|++|+|+++++ ++++.++ ++ + ||+|++++|+|++ +..
T Consensus 78 ~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~~~~~~l----~~~~~g~~~~~~~~~gd~V~v~~p~y~~----~~~ 148 (427)
T 3ppl_A 78 DGIVDIRQIWADLLGVPVE-QVLAGDASSLNIMFDVISWSY----IFGNNDSVQPWSKEETVKWICPVPGYDR----HFS 148 (427)
T ss_dssp SCCHHHHHHHHHHHTSCGG-GEEECSSCHHHHHHHHHHHHH----HHCCTTCSSCGGGSSCCEEEEEESCCHH----HHH
T ss_pred CCcHHHHHHHHHHhCCCcc-eEEEeCCcHHHHHHHHHHHHH----hccCCcccccccCCCCCEEEEcCCCcHH----HHH
Confidence 4456899999999999876 999999999999 5777776 33 4 8999999999994 456
Q ss_pred HHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEe-cccCcCcccccHH---HHHHHH-HhcCcEEEEeccccCC
Q 012718 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIH-HISNMLASILPIE---EIVHWS-HDVGAKVLVDACQSVP 250 (458)
Q Consensus 177 ~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~-~~~n~tG~~~~l~---~i~~l~-~~~~~~vivD~a~~~g 250 (458)
.++..|++++.+|+++++ +|++.|++.++ +++++|++. +++||||.++|.+ +|+++| +++|++||+|++|+..
T Consensus 149 ~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~ 227 (427)
T 3ppl_A 149 ITERFGFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVH 227 (427)
T ss_dssp HHHHTTCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTC
T ss_pred HHHHcCCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCccc
Confidence 667789999999998776 89999999995 578888754 8999999999966 888999 9999999999999842
Q ss_pred cc------cCCC-------CCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCc
Q 012718 251 HM------VVDV-------QGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 251 ~~------~~~~-------~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
.. ++++ +..+.+++++|+||.++ +-++||++.++++++.+.......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~------------------- 288 (427)
T 3ppl_A 228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIR------------------- 288 (427)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHH-------------------
T ss_pred ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcc-------------------
Confidence 21 1121 13457899999999743 334999999988776654332110
Q ss_pred cCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHH----hcCCCEEEeCCCCCCcCccccEEEEEeCC
Q 012718 317 FEAGTPAIGEAIGLGAAIDY---LSTIGMQKIHAYEMELAKYLYENL----LSIPNIRIYGPKPSEHVQRAALCSFNVEN 389 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~---~~~~g~~~~~~~~~~l~~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 389 (458)
..+++.....++..+++. +.. .+.+.++.+++.++.+.+.| ..++++++..+. .+.++++.+++
T Consensus 289 --~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~------~g~~~~~~~~~ 359 (427)
T 3ppl_A 289 --GIGPNKVNQLAHARYFGDAEGVRA-VMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA------GGYFISLDVVP 359 (427)
T ss_dssp --CSCCCHHHHHHHHHHHCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS------BSSCEEEECST
T ss_pred --cCCCCHHHHHHHHHHHhChhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC------ccEEEEEECCc
Confidence 123344444444444432 111 14445555555555555554 444456665543 26689999986
Q ss_pred CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 390 IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 390 ~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+..++.+.|.++ ||.+++|+.|.... .-..++++|||++. .+++++++++++|.++++++.
T Consensus 360 ~~~~~~~~~l~~~-gv~v~~~g~~~~~~--~~~~~~~~Ris~~~-~~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 360 GTASRVAELAKEA-GIALTGAGSSYPLR--QDPENKNLRLAPSL-PPVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp TCHHHHHHHHHHT-TEECCCTTTTSGGG--CCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHC-CCEEecCcCcCCCC--CCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 6778898888888 99999944332210 00126899999975 489999999999999998764
No 146
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.97 E-value=1e-29 Score=247.16 Aligned_cols=300 Identities=17% Similarity=0.137 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+|+++|.+ ++++++|||+|+++++. + +++||+|+++.++|++....+...++..|++++.++
T Consensus 54 ~~~~~~lr~~la~~~g~~---~~i~~~sGt~a~~~al~-~----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQ---YGLAFSSGSATTATILQ-S----LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp CHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHH-T----SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred ChhHHHHHHHHHHHhCCC---cEEEECChHHHHHHHHH-H----cCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 456778999999999987 56666667999999999 7 678999999999999776555555667799999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc----CcEEEEeccccCCcccCCCCCCCCcEEE
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV----GAKVLVDACQSVPHMVVDVQGLDADFLV 265 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~----~~~vivD~a~~~g~~~~~~~~~~~d~~~ 265 (458)
.+ | +++++++++++++|++++++||||.+.|+++|.++|+++ |+++|+|++|+.+... +...+++|+++
T Consensus 126 ~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~~~di~~ 198 (393)
T 1n8p_A 126 DL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNFGADIVV 198 (393)
T ss_dssp SH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGGTCSEEE
T ss_pred CC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHcCCeEEE
Confidence 76 7 899999998999999999999999999999999999999 9999999999976542 34455799999
Q ss_pred ecccCCCCCCc--e-eEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 266 ASSHKMCGPTG--I-GFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 266 ~s~~K~~gp~g--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
.|+||++|+.| + |+++++ +++++.+......+ .++.+.....++..+++.
T Consensus 199 ~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~---------------------g~~~~~~~~~~~~~~l~~----- 252 (393)
T 1n8p_A 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAI---------------------GAIPSPFDAWLTHRGLKT----- 252 (393)
T ss_dssp EETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH---------------------CCCCCHHHHHHHHHHHTT-----
T ss_pred EECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHhccch-----
Confidence 99999999888 6 999986 56655554321100 123333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-EE-EeCCCC-CCc---------Cc-c-ccEEEEEeCCC--ChHHHHHHHhhhcCe
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPN-IR-IYGPKP-SEH---------VQ-R-AALCSFNVENI--HPTDIATLLDQQYGV 405 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~-~~-~~~~~~-~~~---------~~-~-~~~v~~~~~~~--~~~~~~~~l~~~~gi 405 (458)
+....++..++++.+.+.|.+.+. +. +..+.- ..+ .. . +++++|.+++. +...+...+... ++
T Consensus 253 ~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~-~~ 331 (393)
T 1n8p_A 253 LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLF-TL 331 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSS-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcc-eE
Confidence 344445556677778888887765 54 322211 000 11 3 66999999863 223344444333 56
Q ss_pred EeccCCCCCh------hhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 406 ATRSGHHCAQ------PLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 406 ~~~~g~~~~~------~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.++.|+.|+. +.+ ..+|. ++.+|+|++.++++++|+.+.++|+++.
T Consensus 332 ~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 332 AESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp CSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 6666765542 222 23444 5899999999999999999999988753
No 147
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.97 E-value=3.3e-28 Score=239.06 Aligned_cols=355 Identities=15% Similarity=0.134 Sum_probs=241.8
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
.++++.+.+++.+.+...... ...... +..+..+++++.+++++|.+ ++++++|||+|+.+++.++. +++
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--g~~~l~~~l~~~la~~~g~~---~~i~~~~gt~al~~~~~~~~---~~~ 81 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSNRWA--ISGYWT--GEESMERKFAKAFADFNGVP---YCVPTTSGSTALMLALEALG---IGE 81 (418)
T ss_dssp SCCCHHHHHHHHHHHHHTCCS--TTSBCC--SSCCHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTT---CCT
T ss_pred CCCCHHHHHHHHHHHhcCCcc--ccCccc--CCHHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcC---CCC
Confidence 456899999999988763211 011111 12345678999999999987 67888889999999999883 678
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH 235 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~ 235 (458)
||+|+++.++|++.. ..++..|++++.+++++ ++.+|++++++.+++++++|+++ |+||...++++|.++|+
T Consensus 82 gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~ 154 (418)
T 2c81_A 82 GDEVIVPSLTWIATA----TAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQ 154 (418)
T ss_dssp TCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHH
T ss_pred cCEEEECCCccHhHH----HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHH
Confidence 999999999999664 34456799999999986 67899999999999889988864 57999999999999999
Q ss_pred hcCcEEEEeccccCCcc-cC-CCCCCCCcEEEecc--cCCCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCC
Q 012718 236 DVGAKVLVDACQSVPHM-VV-DVQGLDADFLVASS--HKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTF 310 (458)
Q Consensus 236 ~~~~~vivD~a~~~g~~-~~-~~~~~~~d~~~~s~--~K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~ 310 (458)
++|+++|+|++|+.+.. .. .+... .|+++.|+ ||++|+..+|+++.+ +++++.+.+....+.......
T Consensus 155 ~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~------ 227 (418)
T 2c81_A 155 EHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDS------ 227 (418)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCG------
T ss_pred HCCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccc------
Confidence 99999999999998863 11 12222 36777766 998887348888885 566655554333222111000
Q ss_pred CCCCCccC--CCCCCHHH----HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEE
Q 012718 311 ADPPSRFE--AGTPAIGE----AIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALC 383 (458)
Q Consensus 311 ~~~~~~~~--~gt~~~~~----~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v 383 (458)
......+. .+++...+ +..+.+++.......++++.++.+++++++.+.|.+++++++..++... .... .++
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~~~~~~~~ 306 (418)
T 2c81_A 228 SELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQV-SRQTYYGY 306 (418)
T ss_dssp GGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTE-EECCCSEE
T ss_pred cccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC-cccccEEE
Confidence 00001111 11111000 0111122222222346788888899999999999998899987443100 0112 255
Q ss_pred EEEeC-----CCChHHHHHHHhhhcCeE---eccCCCCCh--hhHhhc------------------CC--------CCeE
Q 012718 384 SFNVE-----NIHPTDIATLLDQQYGVA---TRSGHHCAQ--PLHRYL------------------GV--------NASA 427 (458)
Q Consensus 384 ~~~~~-----~~~~~~~~~~l~~~~gi~---~~~g~~~~~--~~~~~~------------------g~--------~~~l 427 (458)
.+.++ +.+..++.+.|.+++||. ++++..+.. +.+..+ +. .+.+
T Consensus 307 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 386 (418)
T 2c81_A 307 VFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSI 386 (418)
T ss_dssp EEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEE
T ss_pred EEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEE
Confidence 57776 567889999998777999 887753311 000001 00 2589
Q ss_pred EEeeCCCC-CHHHHHHHHHHHHHHHHhhhc
Q 012718 428 RASLHFYN-TKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 428 Ris~~~~~-t~~di~~l~~~l~~~~~~~~~ 456 (458)
|++++.++ |++||+++++.|+++++++..
T Consensus 387 rl~~~~~~gt~edi~~~~~~l~~~~~~~~~ 416 (418)
T 2c81_A 387 VIHHAILLAEPSHLSLLVDAVAELARKFCV 416 (418)
T ss_dssp EEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999 999999999999999887643
No 148
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=1.7e-28 Score=238.56 Aligned_cols=301 Identities=19% Similarity=0.263 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.++++++.+ +.+++ ++|++|+..++.++ +++||+|+++.++|++....+...++..|++++.++
T Consensus 51 ~~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~~~~~~~----~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA--GAVLT-NTGMSAIHLVTTVF----LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEE-SSHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred CccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHH----hCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence 345678999999999987 25555 55599999999988 678999999999999877667666777899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.....+ ..++|+++.|+|
T Consensus 124 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~s 197 (386)
T 1cs1_A 124 QG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADLVLHSCT 197 (386)
T ss_dssp TT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETT
T ss_pred CC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceEEEEcCc
Confidence 75 899999999989999999999999999999999999999999999999999977653333 467999999999
Q ss_pred CCCC-CCc-e-eEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCG-PTG-I-GFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~g-p~g-~-G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|+++ |.+ + |++++++ ++++.+.+...++ .++.+....+++..+++. ++..
T Consensus 198 K~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~l~~-----~~~~ 251 (386)
T 1cs1_A 198 KYLNGHSDVVAGVVIAKDPDVVTELAWWANNI---------------------GVTGGAFDSYLLLRGLRT-----LVPR 251 (386)
T ss_dssp TTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------------TCBCCHHHHHHHHHHHTT-----HHHH
T ss_pred ccccCCCCceeEEEEeCcHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHhcccH-----HHHH
Confidence 9766 555 2 9999987 6766665433221 123444443333333332 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---C-
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATRS---G- 410 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~---g- 410 (458)
.++..++.+.+.+.|++++.+.-. .+.-.. ....++++.|.+++. ..++.+.|.++ ||.++. |
T Consensus 252 ~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-gi~~~~~~~g~ 329 (386)
T 1cs1_A 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGL-SLFTLAESLGG 329 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTC-SSSEEBSCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhC-CcceEcccCCC
Confidence 566777788888888887665432 221000 013477999998764 66788888877 998873 4
Q ss_pred -----CCCC------hhh--HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 411 -----HHCA------QPL--HRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 411 -----~~~~------~~~--~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++|. .+. ...+|. ++++|+|++..+++++++++.++|+++.
T Consensus 330 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 330 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2222 111 123343 5899999999888888888888887653
No 149
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.97 E-value=1.1e-27 Score=235.86 Aligned_cols=338 Identities=17% Similarity=0.150 Sum_probs=236.8
Q ss_pred ecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 71 LDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 71 l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
|..+... +.|+.+.+++.+.+... . +.. .....+++++.+++++|.+ ++++|+|+|+|+.+++.++
T Consensus 21 l~~~~p~~~~p~~~~~a~~~~~~~~-~------y~~---~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~l~~l 87 (424)
T 2po3_A 21 LLVGRPNRIDRARLYERLDRALDSQ-W------LSN---GGPLVREFEERVAGLAGVR---HAVATCNATAGLQLLAHAA 87 (424)
T ss_dssp EETTCCCCCCHHHHHHHHHHHHHHT-C------CSS---SCHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHH
T ss_pred ccccCCCCCChHHHHHHHHHHHhcC-C------ccc---CCHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc
Confidence 4444443 34678888888887641 1 110 1345678999999999985 8999999999999999988
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
. +||+|++++++|++.. ..++..|++++.+++++ ++.+|++++++.+++++++|++++ +||...+++
T Consensus 88 ~-----~gd~Vlv~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~ 155 (424)
T 2po3_A 88 G-----LTGEVIMPSMTFAATP----HALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAAD 155 (424)
T ss_dssp T-----CCSEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHH
T ss_pred C-----CCCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHH
Confidence 2 6799999999999654 44566799999999986 577899999999988899988854 799999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCC---CCCCCCcEEEeccc--CCCCCCceeEEEEe-ccccccCCCccccCcceEe
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVD---VQGLDADFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~---~~~~~~d~~~~s~~--K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~ 302 (458)
+|.++|+++|+++|+|++|+.|.. .+ +... .|++++|+| |.+++..+|+++.+ +++++.+......+...
T Consensus 156 ~i~~la~~~~~~li~Dea~~~g~~-~~~~~~~~~-~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~-- 231 (424)
T 2po3_A 156 QLRKVADEHGLRLYFDAAHALGCA-VDGRPAGSL-GDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDL-- 231 (424)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCE-ETTEETTSS-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTC--
T ss_pred HHHHHHHHcCCEEEEECccccCCe-ECCeecccc-cCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccc--
Confidence 999999999999999999997654 22 2222 589999998 77776458999998 56666554332211100
Q ss_pred eecCCCCCCCCCCccCCCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcc-c
Q 012718 303 VFLDHSTFADPPSRFEAGTP-AIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQR-A 380 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~-~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~ 380 (458)
.+.. . ..|.. ...+ .+...++..+. +++++.++.+++.+++.+.|.+++++++..++.. ... .
T Consensus 232 ------~~~~--~--~~g~~~~~~~-~~aa~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~ 296 (424)
T 2po3_A 232 ------PGGS--P--AGGTNAKMSE-AAAAMGLTSLD--AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRH--GLNNH 296 (424)
T ss_dssp ------TTCC--T--TCCCBCCCCH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGG--SCCCC
T ss_pred ------cccc--c--ccCcCCCcCH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCC--Ccccc
Confidence 0000 0 01111 1111 12222233232 2677888889999999999998889988763211 011 1
Q ss_pred cEEEEEeC----CCChHHHHHHHhhhcCeEeccCCCCChhhH-----hhcC---C-------CCeEEEeeCCCCCHHHHH
Q 012718 381 ALCSFNVE----NIHPTDIATLLDQQYGVATRSGHHCAQPLH-----RYLG---V-------NASARASLHFYNTKEDVD 441 (458)
Q Consensus 381 ~~v~~~~~----~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~-----~~~g---~-------~~~lRis~~~~~t~~di~ 441 (458)
.++++.++ +.+..++.+.|.++ ||.+++. |..+.+ ..+| . ...+|++++.+++++|++
T Consensus 297 ~~~~i~~~~~~~~~~~~~l~~~L~~~-gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~ 373 (424)
T 2po3_A 297 QYVIVEIDEATTGIHRDLVMEVLKAE-GVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIR 373 (424)
T ss_dssp CCEEEEECHHHHSSCHHHHHHHHHHT-TEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHH
T ss_pred EEEEEEECCccchhhHHHHHHHHHHC-CCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHH
Confidence 45667776 46788899999888 9999762 221111 0111 0 234888888889999999
Q ss_pred HHHHHHHHHHHhhh
Q 012718 442 EFIHALNETVSFFN 455 (458)
Q Consensus 442 ~l~~~l~~~~~~~~ 455 (458)
++++.|.+++++..
T Consensus 374 ~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 374 RVADLLRLCATRGR 387 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhH
Confidence 99999999987654
No 150
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.97 E-value=8.8e-29 Score=243.35 Aligned_cols=302 Identities=13% Similarity=0.134 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHH--HHHHHHcCCCCCCC------------CCEEEEcCCCCccchHHHHHH
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAI--NLVAYSWGLSNLKS------------GDEVILTVAEHHSAIVPWQLV 177 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~--~~~~~~l~~~~~~~------------g~~vl~~~~~~~s~~~~~~~~ 177 (458)
...++|++++++++++++ +|++|+|+++++ .+++.++. ++ +++|++++|+|++ +...
T Consensus 77 G~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~----~~~~ 147 (422)
T 3d6k_A 77 GIADIRELWAEALGLPAD-LVVAQDGSSLNIMFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDR----HFTI 147 (422)
T ss_dssp CCHHHHHHHHHHHTCCGG-GEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHH----HHHH
T ss_pred CCHHHHHHHHHHhCCChh-HEEEecchHHHHHHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHH----HHHH
Confidence 356899999999998876 999999999997 67767662 23 4579999999994 4556
Q ss_pred HHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEE-EecccCcCcccccHH---HHHHHHH-hcCcEEEEeccccCCc
Q 012718 178 AQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVV-IHHISNMLASILPIE---EIVHWSH-DVGAKVLVDACQSVPH 251 (458)
Q Consensus 178 a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~-~~~~~n~tG~~~~l~---~i~~l~~-~~~~~vivD~a~~~g~ 251 (458)
++..|++++.+++++++ +|++++++.+++ ++++|+ +++++||||.++|.+ +|+++|+ ++|+++|+|++|+.+.
T Consensus 148 ~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~ 226 (422)
T 3d6k_A 148 TEHFGFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT 226 (422)
T ss_dssp HHHHTCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred HHHcCCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence 67779999999988766 899999999986 788888 799999999999965 8888888 9999999999997311
Q ss_pred c-----c-CCC-------CCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCc
Q 012718 252 M-----V-VDV-------QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 252 ~-----~-~~~-------~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
+ + ..+ ...+.++++.|+||..+| | +||+++++++++.+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-GlriG~~~~~~~l~~~l~~~~~~-------------------- 285 (422)
T 3d6k_A 227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHA-GSGVSFFASSKENIEWYASHANV-------------------- 285 (422)
T ss_dssp SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCT-TSSCEEEECCHHHHHHHHHHHHH--------------------
T ss_pred cCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCc-ccceEEEEeCHHHHHHHHHHHHh--------------------
Confidence 1 0 111 234578999999997333 5 99999998877666533211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHh----cCCCEEEeCCCCCCcCccccEEEEEeCCC
Q 012718 317 FEAGTPAIGEAIGLGAAIDYLS--TIGMQKIHAYEMELAKYLYENLL----SIPNIRIYGPKPSEHVQRAALCSFNVENI 390 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~~~--~~g~~~~~~~~~~l~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 390 (458)
+ ..+.+.....++..+++... ...+++.++++++.++++.+.|. .++++++..+. .+.++++.+++.
T Consensus 286 ~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~------~g~~~~~~~~~~ 358 (422)
T 3d6k_A 286 R-GIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT------GGYFISVDVVPG 358 (422)
T ss_dssp H-CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS------BSSCEEEEESTT
T ss_pred h-cCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC------cceEEEEECCCC
Confidence 1 12345555555555554311 01145556666666666666654 34346765543 156899999855
Q ss_pred ChHHHHHHHhhhcCeEecc-CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 391 HPTDIATLLDQQYGVATRS-GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 391 ~~~~~~~~l~~~~gi~~~~-g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+..++.+.+.++ ||.+++ |.+|.... .+.++++|||++. ++++++++++++|+++++++..
T Consensus 359 ~~~~~~~~l~~~-gV~v~~~g~~f~~~~---~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 359 TASRVVELAKEA-GIALTGAGSSFPLHN---DPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp CHHHHHHHHHHT-TEECCCTTTTSGGGC---CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CeEEEcCccccCCCC---CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 567788888877 999999 45443110 0125799999997 8999999999999999887643
No 151
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.97 E-value=3.3e-28 Score=237.06 Aligned_cols=335 Identities=14% Similarity=0.148 Sum_probs=237.9
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++++.+++.+.+......+ .....+++++.+++++|.+ ++++++|+|+|+.+++.++. +++||
T Consensus 10 ~~~~v~~a~~~~~~~~~~~~----------~g~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~l~---~~~gd 73 (394)
T 1o69_A 10 MGGNELKYIEEVFKSNYIAP----------LGEFVNRFEQSVKDYSKSE---NALALNSATAALHLALRVAG---VKQDD 73 (394)
T ss_dssp --CCHHHHHHHHHHHTTTSC----------TTHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred CCHHHHHHHHHHHHcCCccC----------CChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcC---CCCCC
Confidence 45667788887776421110 1245678999999999984 89999999999999999873 67899
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccCcCcccccHHHHHHHHH
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSH 235 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~l~~i~~l~~ 235 (458)
+|+++.++|++....+ +..|++++.+++++++.+|++++++.+++ ++++|++++ ++|...++++|.++|+
T Consensus 74 ~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~ 146 (394)
T 1o69_A 74 IVLASSFTFIASVAPI----CYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICK 146 (394)
T ss_dssp EEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred EEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHH
Confidence 9999999999876544 44699999999987788999999999876 789999886 6999999999999999
Q ss_pred hcCcEEEEeccccCCcccCCC--CC-CCCcEEEecccCCCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCCC
Q 012718 236 DVGAKVLVDACQSVPHMVVDV--QG-LDADFLVASSHKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 236 ~~~~~vivD~a~~~g~~~~~~--~~-~~~d~~~~s~~K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
++|+++|+|++|+.|....+. .. .++|+.++|.+|.+++.++|+++++ +++++.+......+.. ....+.
T Consensus 147 ~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~------~~~~~~ 220 (394)
T 1o69_A 147 ENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARE------NCLHYE 220 (394)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCC------SSSSCC
T ss_pred HcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccc------cCcccc
Confidence 999999999999976553221 11 2467778788998888789999996 5666655433221110 000111
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEEeCC-
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFNVEN- 389 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~- 389 (458)
....+++.++++....+++.. +++ +++..++.+++++++.+.|.++ +++..+... .... .++++.++.
T Consensus 221 ~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~--~~~~~~~~~i~~~~~ 290 (394)
T 1o69_A 221 HLDYGYNYRLSNVLGAIGVAQ-MEV-----LEQRVLKKREIYEWYKEFLGEY--FSFLDELEN--SRSNRWLSTALINFD 290 (394)
T ss_dssp CSSCCCBCBCCHHHHHHHHHH-HTT-----HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTT--EECCCSSEEEEESCC
T ss_pred ccccCcccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhccc--ccccCCCCC--CcceeEEEEEEecch
Confidence 223455556776655555432 333 4557788899999999999886 665543211 0112 257787763
Q ss_pred ---------------------CChHHHHHHHhhhcCeEeccCCCCCh--hhHhhc---CC-------CCeEEEeeCCCCC
Q 012718 390 ---------------------IHPTDIATLLDQQYGVATRSGHHCAQ--PLHRYL---GV-------NASARASLHFYNT 436 (458)
Q Consensus 390 ---------------------~~~~~~~~~l~~~~gi~~~~g~~~~~--~~~~~~---g~-------~~~lRis~~~~~t 436 (458)
.+..++.+.|.++ ||.++++..|.. +....+ +. ...+|+..+.++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 369 (394)
T 1o69_A 291 KNELNACQKDINISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMS 369 (394)
T ss_dssp GGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCC
T ss_pred hhccccccccccccccccccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCC
Confidence 2567899999888 999998854421 211111 00 1457777789999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012718 437 KEDVDEFIHALNETVSF 453 (458)
Q Consensus 437 ~~di~~l~~~l~~~~~~ 453 (458)
++|++++++.|+++++.
T Consensus 370 ~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 370 KDDVYEISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
No 152
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.97 E-value=1.3e-27 Score=232.57 Aligned_cols=338 Identities=16% Similarity=0.215 Sum_probs=236.2
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC---
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS--- 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~--- 152 (458)
...+++.+.+++.+.+.... +. .....+++++.+++++|.+ ++++++|||+|++.++.++...
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~~al~~~~~~~~~ 75 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDSKM-------FT----MGEYVKQYETQFAKTFGSK---YAVMVSSGSTANLLMIAALFFTKKP 75 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHTC-------CS----SCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTSSSSC
T ss_pred CCCCCHHHHHHHHHHHHcCC-------CC----CChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHHhhhhc
Confidence 34678889999988886521 11 1345678999999999986 6888999999999999987210
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
.+++||+|+++.++|++...+ ++..|++++.++++++ +.+|++++++.+++++++|++++ ++|...|+++|.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~ 148 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYP----LQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEIN 148 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHH
T ss_pred CCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHH
Confidence 167899999999999976544 4457999999999876 88999999999998999998874 578889999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCCCCCCC--cEEEecc---cCCCCCCceeEEEEec-cccccCCCccccC--cc---e
Q 012718 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDA--DFLVASS---HKMCGPTGIGFLFGKS-DLLSAMPPFLGGG--EM---I 300 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~~~~~~~~~~~--d~~~~s~---~K~~gp~g~G~l~~~~-~~~~~l~~~~~g~--~~---~ 300 (458)
++|+++|+++|+|++|+.|..+ +....+. |+.++|+ +|+.++.| |+++.++ ++.+.+.+...++ .. .
T Consensus 149 ~l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~ 226 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKK 226 (390)
T ss_dssp HHHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSE
T ss_pred HHHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCcccccc
Confidence 9999999999999999988764 4444444 6655543 34544555 8999887 4544444332222 10 0
Q ss_pred -----EeeecC-CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 301 -----SDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 301 -----~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
...... ...+.-...++..++++....+++.. ++. ++++.++.+++++++.+.|++++++++..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~- 299 (390)
T 3b8x_A 227 NKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKK-----LPRFISVRRKNAEYFLDKFKDHPYLDVQQETG- 299 (390)
T ss_dssp ETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHTTCSSEEECCCCS-
T ss_pred ccccccccccccccccceeccccccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhcCCCCcccCCCCC-
Confidence 000000 00000001123334555555555432 332 46788888999999999999988998765431
Q ss_pred CcCcccc-EEEEEeC---CCChHHHHHHHhhhcCeEecc---CCCCCh-hhHhhc-----CC--------CCeEEEeeCC
Q 012718 375 EHVQRAA-LCSFNVE---NIHPTDIATLLDQQYGVATRS---GHHCAQ-PLHRYL-----GV--------NASARASLHF 433 (458)
Q Consensus 375 ~~~~~~~-~v~~~~~---~~~~~~~~~~l~~~~gi~~~~---g~~~~~-~~~~~~-----g~--------~~~lRis~~~ 433 (458)
.... .+++.++ +.+..++.+.|.++ ||.+++ ++.|.. +....+ +. .+.+|++++.
T Consensus 300 ---~~~~~~~~i~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 375 (390)
T 3b8x_A 300 ---ESSWFGFSFIIKKDSGVIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQ 375 (390)
T ss_dssp ---BCCCCEEEEEECTTSCCCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCS
T ss_pred ---CcccEEEEEEecCcCcccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCC
Confidence 1122 3556666 45788999999988 999986 555655 543210 00 2579999999
Q ss_pred CCCHHHHHHHHHHH
Q 012718 434 YNTKEDVDEFIHAL 447 (458)
Q Consensus 434 ~~t~~di~~l~~~l 447 (458)
++|++||+++++.|
T Consensus 376 ~~t~~di~~i~~~l 389 (390)
T 3b8x_A 376 IELFDEIDYLREVL 389 (390)
T ss_dssp SCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
No 153
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.97 E-value=3.8e-29 Score=243.75 Aligned_cols=300 Identities=18% Similarity=0.186 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+++++|.+ +.++++ +|++|+..++. + +++||+|+++++.|+++...+...++..|++++.++.
T Consensus 67 p~~~~l~~~la~~~g~~--~~i~~~-sG~~ai~~~~~-l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 138 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK--YCLAFA-SGLAATVTITH-L----LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC 138 (403)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEES-CHHHHHHHHHT-T----SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred chHHHHHHHHHHHhCCC--cEEEEC-CHHHHHHHHHH-H----hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence 44668999999999986 255555 55799999987 6 6899999999999998776676666778999999987
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcC-cEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG-AKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~-~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
+ |++++++.+++++++|++++++||||.+.|+++|+++|+++| +++|+|++|+.+.....+ ..++|+++.|+|
T Consensus 139 ~-----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~s 212 (403)
T 3cog_A 139 S-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSAT 212 (403)
T ss_dssp T-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETT
T ss_pred C-----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcCh
Confidence 6 899999999999999999999999999999999999999999 999999999987542223 257999999999
Q ss_pred CCCC-CCc--eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCG-PTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~g-p~g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|++| +.| +|+++++ +++++.+.....+++ ++.+.....++..+++.+ +..
T Consensus 213 K~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g---------------------~~~~~~~~~~~~~~l~~l-----~~r 266 (403)
T 3cog_A 213 KYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG---------------------AVPSPIDCYLCNRGLKTL-----HVR 266 (403)
T ss_dssp TTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHTTH-----HHH
T ss_pred hhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC---------------------CCCCHHHHHHHHhhhhHH-----HHH
Confidence 9666 555 5999996 566666554332221 234444444444444433 223
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEec---cCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATR---SGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~---~g~ 411 (458)
.++..+++..+.+.|++.+.++-. .+.-.. ....++++.|.+++. ..++.+.+.+. +|.++ .|.
T Consensus 267 ~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~l~~~-~i~~~~~s~G~ 344 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-LQHAEIFLKNL-KLFTLAESLGG 344 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHC-SSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-HHHHHHHHHhC-CcceEccCCCC
Confidence 344445555556666554333211 110000 012377999998753 35566666665 88543 232
Q ss_pred ------CCChhh--------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 412 ------HCAQPL--------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 412 ------~~~~~~--------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+|.... ...+|. ++.+|+|++..+++++|+.+.++|+++++
T Consensus 345 ~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 345 FESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred cceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 332211 123454 68999999998888888888888876654
No 154
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.96 E-value=5.2e-28 Score=236.03 Aligned_cols=311 Identities=13% Similarity=0.099 Sum_probs=224.3
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC--
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL-- 154 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~-- 154 (458)
+..++.+.+++.+.+..... .... + ..+..+++++.+++++|. +++++|+|+++|+..++.++.. .
T Consensus 55 g~~~~~v~~a~~~~~~~~~~-~~~~-~-----~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~~~al~~~~~--~~~ 122 (397)
T 2ord_A 55 GHSHPRLVEAIKDQAEKLIH-CSNL-F-----WNRPQMELAELLSKNTFG---GKVFFANTGTEANEAAIKIARK--YGK 122 (397)
T ss_dssp CBTCHHHHHHHHHHHHHCSC-CCTT-S-----EEHHHHHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHH--HHH
T ss_pred CCCCHHHHHHHHHHHHhccc-Cccc-c-----CCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHH--Hhh
Confidence 45688999999998876321 1111 1 235567889999999984 3899999999999999987620 1
Q ss_pred ---CCCCEEEEcCCCCccchHHHHHHHHHcCCe------------EEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 155 ---KSGDEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 155 ---~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
..++.|++.+++|++..... +...|.+ ++.++.+ |++++++.+++++++|++++++|
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~n 194 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTLGS---LTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDVCAVFLEPIQG 194 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSHHH---HHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTEEEEEECSEEC
T ss_pred cCCCCCceEEEEcCCcCCCchhh---hhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCeEEEEEecccC
Confidence 23578999999998765422 2334554 6677653 89999999998999999999999
Q ss_pred cCcc-ccc---HHHHHHHHHhcCcEEEEecccc-CCcc--cCCCC--CCCCcEEEecccCCCCC-CceeEEEEecccccc
Q 012718 220 MLAS-ILP---IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQ--GLDADFLVASSHKMCGP-TGIGFLFGKSDLLSA 289 (458)
Q Consensus 220 ~tG~-~~~---l~~i~~l~~~~~~~vivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~ 289 (458)
|||. +++ +++|.++|+++|+++|+|++|+ ++.. +..+. ...+|++ |++|.+++ .++|+++++++++ .
T Consensus 195 ptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~ 271 (397)
T 2ord_A 195 ESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-V 271 (397)
T ss_dssp TTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-C
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-c
Confidence 9999 554 8899999999999999999997 2211 11111 1236866 66897763 3499999998876 5
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CC
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PN 365 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~ 365 (458)
+..... ....+.+...+.++.++++.+.+ +++.++++++++++.+.|+++ +.
T Consensus 272 l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 327 (397)
T 2ord_A 272 LEPGDH---------------------GTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDV 327 (397)
T ss_dssp CCTTSS---------------------CCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCc---------------------CCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 542111 01124566667777777776654 456778888888888888654 32
Q ss_pred EEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
+.... ..+.++++.+++ .+..++.+.|.++ ||.++++. ++++|++++...+++|+++++
T Consensus 328 ~~~~~-------~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~------------~~~iRis~~~~~~~e~i~~~~ 387 (397)
T 2ord_A 328 VADVR-------GMGLMIGIQFREEVSNREVATKCFEN-KLLVVPAG------------NNTIRFLPPLTVEYGEIDLAV 387 (397)
T ss_dssp EEEEE-------EETTEEEEEECTTSCHHHHHHHHHHT-TEECEEET------------TTEEEECCCTTCCHHHHHHHH
T ss_pred eEEEE-------EEeEEEEEEECChHHHHHHHHHHHHC-CCEEccCC------------CCEEEEECCcCCCHHHHHHHH
Confidence 22111 226788898874 4578899999987 99998763 578999998889999999999
Q ss_pred HHHHHHHHhh
Q 012718 445 HALNETVSFF 454 (458)
Q Consensus 445 ~~l~~~~~~~ 454 (458)
++|+++++++
T Consensus 388 ~~l~~~l~~~ 397 (397)
T 2ord_A 388 ETLKKVLQGI 397 (397)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhC
Confidence 9999988653
No 155
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.96 E-value=6.5e-29 Score=241.38 Aligned_cols=295 Identities=19% Similarity=0.213 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+++++.+++++|.+ ++++++||++|+..++.++ +++||+|+++.++|++....+..+++..|++++.++
T Consensus 58 ~~~~~~l~~~la~~~g~~---~~i~~~sG~~ai~~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 130 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA---GSAAFGSGMGAISSSTLAF----LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID 130 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHTTT----CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 456778999999999986 5677778899999999877 689999999999999887777776788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc--cCCCCCCCCcEEEec
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--VVDVQGLDADFLVAS 267 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~--~~~~~~~~~d~~~~s 267 (458)
.. |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.. +++ .++|+++.|
T Consensus 131 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~di~~~S 202 (389)
T 3acz_A 131 TS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGADIALHS 202 (389)
T ss_dssp TT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTCSEEEEE
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCCeEEEEC
Confidence 74 89999999999999999999999999999999999999999999999999987653 443 579999999
Q ss_pred ccCCCC-CCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 268 SHKMCG-PTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 268 ~~K~~g-p~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+||+++ +.+ +|++++++ ++++.+.+....+ .++.+.....++..+++. ++
T Consensus 203 ~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~---------------------g~~~~~~~~~~~~~~l~~-----l~ 256 (389)
T 3acz_A 203 VSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA---------------------GSLMAPMDAFLCARGMKT-----LP 256 (389)
T ss_dssp TTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------------CCCCCHHHHHHHHHHHTT-----HH
T ss_pred ChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHcCccH-----HH
Confidence 999665 555 59999998 7776665433111 123333333333333332 33
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---
Q 012718 344 KIHAYEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATRS--- 409 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~--- 409 (458)
...++..++++.+.+.|++.+.++-. .+.-.. ....+++++|.+++ ..++.+.+.+. ++.++.
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~-~i~~~~~s~ 333 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHL-KVCTLAVSL 333 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTC-SSSEEBSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhC-CCcEECcCC
Confidence 34455556777777777766544322 111000 01236799999976 56677777766 887766
Q ss_pred C------CCCChhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 410 G------HHCAQPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 410 g------~~~~~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
| .+|....+ ..+|. ++.+|+|++..+ ++.+++.|.++++
T Consensus 334 G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~----~~~li~~l~~al~ 387 (389)
T 3acz_A 334 GCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIEN----VDDIIADLKQALE 387 (389)
T ss_dssp CCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHHT
T ss_pred CCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCC----HHHHHHHHHHHHh
Confidence 5 55654332 23454 689999999854 4444455554443
No 156
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.3e-28 Score=240.39 Aligned_cols=298 Identities=18% Similarity=0.226 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.++++.|.+ ++++++||++|+..++.++ +++||+|+++++.|++....+....+..|++++.++
T Consensus 80 ~p~~~~l~~~la~~~g~~---~~~~~~sG~~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 152 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAP---AAFATASGMAAVFTSLGAL----LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVD 152 (414)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeC
Confidence 456778999999999975 7899999999999999887 789999999999999877666666677899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.... ....+.|+++.|++
T Consensus 153 ~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-~~~~g~div~~S~s 226 (414)
T 3ndn_A 153 GD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ-GFPLGVDVVVYSGT 226 (414)
T ss_dssp TT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-CGGGTCSEEEEETT
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC-chhcCCCeEeccCC
Confidence 76 8999999999999999999999999999999999999999999999999999665422 22567899999999
Q ss_pred CCCCCCc---eeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCGPTG---IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|++|+.| +|+++.+++.+. .+....... .++.+....+. ++..+.. +...
T Consensus 227 K~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~---------------------g~~~~~~~a~~---~~~~l~~--l~~r 280 (414)
T 3ndn_A 227 KHIDGQGRVLGGAILGDREYIDGPVQKLMRHT---------------------GPAMSAFNAWV---LLKGLET--LAIR 280 (414)
T ss_dssp TTTTCSSCCCCEEEEECHHHHTTHHHHHHHHH---------------------CCCCCHHHHHH---HHHHGGG--HHHH
T ss_pred ccccCCCCceEEEEEECHHHHHHHHHHHHHHc---------------------CCCCCHHHHHH---HHHHHHH--HHHH
Confidence 9988877 799999887654 333211100 12233322222 2222222 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCCC------ChHHHHHHHhhhcCeEec
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVENI------HPTDIATLLDQQYGVATR 408 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~~------~~~~~~~~l~~~~gi~~~ 408 (458)
.++..++++++.+.|++.|++... .|.-... ...+++++|.+++. ....+.+.+... ++.++
T Consensus 281 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~-~~~~s 359 (414)
T 3ndn_A 281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI-DISNN 359 (414)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSS-EECSC
T ss_pred HHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccc-eEcCC
Confidence 566678888999999988887643 3321100 12467999999763 234566666544 77777
Q ss_pred cCCCCChhh--------------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 409 SGHHCAQPL--------------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 409 ~g~~~~~~~--------------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.|..++.-. ...+|. ++.+|+|++. ||++.+++.|++++
T Consensus 360 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 360 LGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp CSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 776544210 112343 6899999997 67777777777665
No 157
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.96 E-value=1.2e-27 Score=235.97 Aligned_cols=341 Identities=10% Similarity=0.038 Sum_probs=236.8
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++..|+|..+. +..++.+.+++.+.+.....+.. +.+ ......++++.++++++.+.+ +|+||+|++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt 113 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF-GGI-----THAPAIELCRKLVAMTPQPLE-CVFLADSGS 113 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCC-SSE-----ECHHHHHHHHHHHHHSCTTCC-EEEEESSHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccc-ccc-----CCHHHHHHHHHHHHhCCCCCC-EEEEeCCHH
Confidence 34467776433 23689999999999876432211 111 123345778899999987665 999999999
Q ss_pred HHHHHHHHHcCCCCC----CCCCEEEEcCCCCccchHHHHHHHH-----H--c---CCeEEEEeCCC-----C-CCCCHH
Q 012718 140 EAINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQ-----K--T---GANLKFLNLND-----D-ESPDLD 199 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~----~~g~~vl~~~~~~~s~~~~~~~~a~-----~--~---g~~~~~v~~~~-----~-~~~d~~ 199 (458)
+|++.++.++.. .. ++|++|++.+++|++.......+.. + . ...+..++.+. + +.+|++
T Consensus 114 ea~~~ai~~~~~-~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 192 (429)
T 1s0a_A 114 VAVEVAMKMALQ-YWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192 (429)
T ss_dssp HHHHHHHHHHHH-HHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGH
T ss_pred HHHHHHHHHHHH-HhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHH
Confidence 999999886510 01 2589999999999976543322110 0 0 11345555542 2 357999
Q ss_pred HHHHhhc---CCceEEEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEe
Q 012718 200 KLKEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVA 266 (458)
Q Consensus 200 ~l~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~ 266 (458)
++++.++ +++++|+++.+ +||||.+.+ +++|.++|+++|+++|+|++|+ +|... .+.....+|++
T Consensus 193 ~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~-- 270 (429)
T 1s0a_A 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL-- 270 (429)
T ss_dssp HHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--
T ss_pred HHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--
Confidence 9999987 46788888888 899998887 9999999999999999999997 54321 22223457876
Q ss_pred cccCCCC-C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 267 SSHKMCG-P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 267 s~~K~~g-p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
|++|.++ + .++|++++++++++.+.....++. ......+.+...+.++.++++.+.+ +.
T Consensus 271 t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~----------------~~~~t~~~n~~~~~a~~aal~~~~~---~~ 331 (429)
T 1s0a_A 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCF----------------MHGPTFMGNPLACAAANASLAILES---GD 331 (429)
T ss_dssp EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSC----------------SCCCTTTTCHHHHHHHHHHHHHHHT---CH
T ss_pred EecccccCCCccceEEEeCHHHHHHhhcCCCccc----------------ccCCCCCCCHHHHHHHHHHHHHHHh---CC
Confidence 4679555 4 569999999887665532100000 0001224577777788888887765 25
Q ss_pred HHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 345 IHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
+.++++++++++.+.|+++ +++....+ .+.++++.+++ .+..++.+.|.++ ||.+++.
T Consensus 332 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~---------- 393 (429)
T 1s0a_A 332 WQQQVADIEVQLREQLAPARDAEMVADVRV-------LGAIGVVETTHPVNMAALQKFFVEQ-GVWIRPF---------- 393 (429)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-------ETTEEEEEESSCBCHHHHHHHHHHT-TEECCCB----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-------eeEEEEEEECCcccHHHHHHHHHHC-CCEEecc----------
Confidence 6788888899999998775 45543222 25688888874 4677899999887 9999752
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+++||+++..++++|+++++++|++++++++.
T Consensus 394 ---~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~~~ 426 (429)
T 1s0a_A 394 ---GKLIYLMPPYIILPQQLQRLTAAVNRAVQDETF 426 (429)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHTSSGGG
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 368999999889999999999999999876543
No 158
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.96 E-value=9.1e-28 Score=236.54 Aligned_cols=321 Identities=12% Similarity=0.089 Sum_probs=226.1
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH---HcCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY---SWGLS 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~---~l~~~ 152 (458)
.+..++.+.+++.+.+..... . . ..+...+...++++.++++++.+.+++|++|+|+++|+..++. .+
T Consensus 55 lg~~~~~v~~a~~~~~~~~~~-~--~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~--- 125 (426)
T 1sff_A 55 TGHLHPKVVAAVEAQLKKLSH-T--C---FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA--- 125 (426)
T ss_dssp TCBTCHHHHHHHHHHTTTCSC-C--C---TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH---
T ss_pred cCCCCHHHHHHHHHHHHhCCC-c--c---ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh---
Confidence 345788899999888754211 1 1 0122345677899999999932332489999999999999987 44
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-------------EEEEeCCCC-----CCCCHHHHHHhhc-----CCc
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-------------LKFLNLNDD-----ESPDLDKLKEMLS-----RKT 209 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-------------~~~v~~~~~-----~~~d~~~l~~~l~-----~~~ 209 (458)
.++| +|++.+++|++....+..+ .|.+ ++.++.+.+ +.+|+++|++.++ +++
T Consensus 126 -~~~~-~vi~~~p~y~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (426)
T 1sff_A 126 -TKRS-GTIAFSGAYHGRTHYTLAL---TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDI 200 (426)
T ss_dssp -HTCC-EEEEETTCCCCSSHHHHHH---SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGE
T ss_pred -hCCC-eEEEECCCcCCCchHhhhh---cCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCce
Confidence 3555 8999999999765433332 2332 677777531 2368999999886 467
Q ss_pred eEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCCCc--ee
Q 012718 210 KLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--IG 278 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp~g--~G 278 (458)
++|+++...++||...+ +++|.++|++||+++|+|++|+ ++.. .++.....+|++ |+||.+|+ | +|
T Consensus 201 ~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG 277 (426)
T 1sff_A 201 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLA 277 (426)
T ss_dssp EEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCE
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCceE
Confidence 78888554444997777 9999999999999999999998 3221 112222346765 78898887 7 79
Q ss_pred EEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012718 279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 279 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~ 358 (458)
++++++++++.+..... ....+.+.....++.++++.+.+. .+.++++++++++.+
T Consensus 278 ~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~ 333 (426)
T 1sff_A 278 GVTGRAEVMDAVAPGGL---------------------GGTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKD 333 (426)
T ss_dssp EEEEEHHHHTTSCTTSB---------------------CCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHH
T ss_pred EEEEcHHHHhhhccCCc---------------------CcCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence 99999988776653211 011245667777777888887653 456677777777777
Q ss_pred HHhc----CCCEEEeCCCCCCcCccccEEEEEeCC---------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 359 NLLS----IPNIRIYGPKPSEHVQRAALCSFNVEN---------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 359 ~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
.|++ ++.+....+ .+.++++.+.+ .+..++.+.|.++ ||.+++|..+ ++
T Consensus 334 ~l~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~----------~~ 395 (426)
T 1sff_A 334 GLLAIAEKHPEIGDVRG-------LGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY----------YN 395 (426)
T ss_dssp HHHHHHHTCTTEEEEEE-------ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT----------SC
T ss_pred HHHHHHHhCCCeEEEEE-------EEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC----------CC
Confidence 7765 333332211 26788998842 2356788888888 9999987631 57
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++|++++..++++|+++++++|++++++++
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 899999988999999999999999998764
No 159
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=1.6e-28 Score=240.93 Aligned_cols=328 Identities=14% Similarity=0.110 Sum_probs=225.1
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHH-hccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CC---CCCCcEEE
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFI-NA---SDSGEIVF 134 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~---~~~~~v~~ 134 (458)
++++.|..+.. .++++.+.+++.+.... ...+. ......++++++++++ +. +..++|++
T Consensus 37 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~----------~~~g~~~lr~~la~~~~~~~~~~~~~~i~~ 106 (413)
T 3t18_A 37 EAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYA----------PIEGEKDYRKIVIDTLFGPYKPEGYISAIA 106 (413)
T ss_dssp GGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCC----------CTTCCHHHHHHHHHHHHGGGCCSSEEEEEE
T ss_pred cceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcC----------CCCCCHHHHHHHHHHHhcccCccccCcEEE
Confidence 46677777753 36778888887664321 11111 1112336667777655 22 22238999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC----Cc
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR----KT 209 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~----~~ 209 (458)
|+|+++|+..++.++ +++||+|+++.|+|++ +...++..|++++.+++. +++.+|++++++.+++ ++
T Consensus 107 t~g~~~al~~~~~~~----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 178 (413)
T 3t18_A 107 TPGGTGAIRSAIFSY----LDEGDPLICHDYYWAP----YRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSD 178 (413)
T ss_dssp ESHHHHHHHHHHHHH----CCSSCEEEEESSCCTH----HHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCS
T ss_pred cCccHHHHHHHHHHh----cCCCCEEEECCCCccc----HHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCC
Confidence 999999999999988 7899999999999994 455566779999999984 4568899999999875 66
Q ss_pred e-EEEEecc-cCcCcccccHH---HHHHHHH------hcCcEEEEeccccCCcc------c-C-CCCCCCCc---EEEec
Q 012718 210 K-LVVIHHI-SNMLASILPIE---EIVHWSH------DVGAKVLVDACQSVPHM------V-V-DVQGLDAD---FLVAS 267 (458)
Q Consensus 210 ~-~v~~~~~-~n~tG~~~~l~---~i~~l~~------~~~~~vivD~a~~~g~~------~-~-~~~~~~~d---~~~~s 267 (458)
+ ++++++| +||||.++|.+ +|+++|+ ++|+++|+|++|..... + . .....+.+ ++++|
T Consensus 179 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 258 (413)
T 3t18_A 179 RIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFS 258 (413)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEe
Confidence 6 8888988 99999999955 5556666 89999999999862111 1 0 11122233 78889
Q ss_pred ccCCCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH----
Q 012718 268 SHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---- 338 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---- 338 (458)
+||.+|++| +|++++ ++++++.+......... ...++++.....++..+++...
T Consensus 259 ~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~a~~~~l~~~~~~~~ 321 (413)
T 3t18_A 259 MSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSAR-----------------CNWSNGTHAAQNILIELERAENKKIY 321 (413)
T ss_dssp HHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHH-----------------HHTSSCCHHHHHHHHHTTSHHHHHHH
T ss_pred cCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhh-----------------ccccCCChHHHHHHHHHhcChHHHHH
Confidence 999998777 899998 77777665532210000 0012355555555555553221
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhH
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
....++++++++++++++.+.|+++ ++++..+.. +.++++.+. +..++.+.|.++ ||.+.+|
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~------~~~~~~~~~--~~~~~~~~l~~~-gv~v~~g-------- 383 (413)
T 3t18_A 322 EQELVDLRNMLKSRADVFVTAAKEN-KLTMIPYFG------GFFTFIPTD--KAFDIVKDLEKE-NIFTIPS-------- 383 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCS------SSCEEEECS--CHHHHHHHHHHT-TEECEEC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCCCc------eEEEEeCCC--CHHHHHHHHHhC-CEEEecC--------
Confidence 1125677888899999999999887 777655431 346666653 678899988877 9999886
Q ss_pred hhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 419 RYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 419 ~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++++||+++.. +.+++ +++|.+++++++
T Consensus 384 -----~~~iRis~~~~-~~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 384 -----AKGIRVAICGV-GEEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp -----SSEEEECTTTS-CGGGH---HHHHHHHHHHHH
T ss_pred -----CCceEEEEeeC-CHHHH---HHHHHHHHHHHh
Confidence 46899999853 44555 777777776654
No 160
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.96 E-value=1.8e-28 Score=240.84 Aligned_cols=345 Identities=12% Similarity=0.116 Sum_probs=234.8
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhH-HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAK-ATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.|..+ ..+.++.+.+++.+.+.... .++.. .++.+.. ..+..+.+++.+++++|+++. +|++++| |+|+.+
T Consensus 27 ~i~l~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 27 GLEMIAS-ENFTLPEVMEVMGSILTNKYAEGYPGK-RYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQPNSG-SQANQG 102 (417)
T ss_dssp SEECCTT-CCCCCHHHHHHHTBGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSH-HHHHHH
T ss_pred Ceeeecc-cCCCCHHHHHHHhhhhhccccccCCCc-cccccchHHHHHHHHHHHHHHHHhCCCCc-ceEeccH-HHHHHH
Confidence 3555433 33458889999888764322 12211 1112222 234444688899999999753 5666555 899999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-HHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEecccCcCc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLA 222 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG 222 (458)
++.++ +++||+|+++.++|++........ ....+..++.++++.++.+|++++++.++ .++++|++++++| |
T Consensus 103 ~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G 176 (417)
T 3n0l_A 103 VYAAL----INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--A 176 (417)
T ss_dssp HHHHH----SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred HHHHh----cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence 99988 789999999999998764322221 12235567777777678899999999998 5889998887764 9
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCC-CCCceeEEEEe-ccccccCCCccc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGK-SDLLSAMPPFLG 295 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~-~~~~~~l~~~~~ 295 (458)
...|+++|.++|+++|+++|+|++|+.|.. +..+. +.|++++|+||.+ |+. +|+++.+ +++++.+.....
T Consensus 177 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~-~G~~~~~~~~~~~~~~~~~~ 253 (417)
T 3n0l_A 177 RVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPR-GGIIMTNDEELAKKINSAIF 253 (417)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCS-CEEEEESCHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCC-eeEEEECCHHHHHHHhhhhC
Confidence 999999999999999999999999875543 22222 4799999999955 455 5999998 566655543222
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
. ...++++...+.++..++......+++++.+++.++++++.+.|.+. ++++.....
T Consensus 254 ~--------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-- 310 (417)
T 3n0l_A 254 P--------------------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGT-- 310 (417)
T ss_dssp T--------------------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC--
T ss_pred C--------------------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCC--
Confidence 1 11356777777777777776544457888999999999999999884 888765321
Q ss_pred cCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHALNE 449 (458)
Q Consensus 376 ~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~l~~ 449 (458)
...++++.+. +.+..++.+.|.++ ||.++++.....+. ..+ ....+|+++... .+++|++++++.|.+
T Consensus 311 ---~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~-~~~-~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~ 384 (417)
T 3n0l_A 311 ---DNHLVLMSFLDREFSGKDADLALGNA-GITANKNTVPGEIR-SPF-ITSGLRLGTPALTARGFKEKEMEIVSNYIAD 384 (417)
T ss_dssp ---SSSEEEEECTTSSSCHHHHHHHHHHT-TEECEECCCTTCCS-CTT-TCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---CceEEEEEcccCCCCHHHHHHHHHHc-CeEEeccccCCCCc-ccC-CCCeeEecCHHHhhCCCCHHHHHHHHHHHHH
Confidence 2557778775 34677888888877 99998654221100 001 146799987632 468999999999999
Q ss_pred HHHhh
Q 012718 450 TVSFF 454 (458)
Q Consensus 450 ~~~~~ 454 (458)
+++..
T Consensus 385 ~l~~~ 389 (417)
T 3n0l_A 385 ILDDV 389 (417)
T ss_dssp HHHTT
T ss_pred HHhcc
Confidence 98754
No 161
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.96 E-value=4.1e-28 Score=234.20 Aligned_cols=337 Identities=15% Similarity=0.121 Sum_probs=230.8
Q ss_pred EecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 70 YLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 70 ~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
|+|.+... +.++++.+++.+.+... .+. .....+++++.+++++|.+ ++++++|||+|+..++.+
T Consensus 4 ~~~~~~~~~~~~~~v~~a~~~~~~~~-------~~~----~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~ 69 (367)
T 3nyt_A 4 FIDLKNQQARIKDKIDAGIQRVLRHG-------QYI----LGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMA 69 (367)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHC-------CCS----SCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHhcC-------Ccc----CChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHH
Confidence 34443333 45677777777776542 111 1245678999999999986 899999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
+ .+++||+|+++.++|++.. ..++..|++++.++++++ +.+|++++++++++++++|+ ++|++|...|+
T Consensus 70 ~---~~~~gd~Vi~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~ 139 (367)
T 3nyt_A 70 L---GVGPGDEVITPGFTYVATA----ETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADF 139 (367)
T ss_dssp T---TCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCH
T ss_pred h---CCCCcCEEEECCCccHHHH----HHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhH
Confidence 8 3689999999999999654 445667999999999876 88899999999998998888 66789999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCC--cEEEecc--cCCCCCCc-eeEEEEec-cccccCCCccccCcceE
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDA--DFLVASS--HKMCGPTG-IGFLFGKS-DLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~--d~~~~s~--~K~~gp~g-~G~l~~~~-~~~~~l~~~~~g~~~~~ 301 (458)
++|.++|+++|+++|+|++|+.|.. .+....+. |++++|+ +|++|+.| +|+++.++ ++.+.+......+...
T Consensus 140 ~~i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~- 217 (367)
T 3nyt_A 140 DAINAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDR- 217 (367)
T ss_dssp HHHHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-
T ss_pred HHHHHHHHHcCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCc-
Confidence 9999999999999999999998765 23222222 9999996 89888755 78888754 4554444332221110
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
.|.....++.. ..+....+ .++..+. .++...++.+++++++.+.|.++ ++.+...... .....
T Consensus 218 -------~~~~~~~g~~~-~~~~~~aa---~~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~--~~~~~ 281 (367)
T 3nyt_A 218 -------RYHHIRVGVNS-RLDTLQAA---ILLPKLE--IFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVN--NISVY 281 (367)
T ss_dssp -------TTEECSCCCBC-CCCHHHHH---HHHHHHH--THHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTT--EECCC
T ss_pred -------CceeeccCcCC-CccHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCC--Cceee
Confidence 00000001111 22222222 2223333 25677788889999999999887 5544332211 11122
Q ss_pred -EEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcC------------CCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 382 -LCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG------------VNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 382 -~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g------------~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
++.+.++ +.+++.+.|.++ ||.++.+..+.......+. ....+|++++..+|++||+++++.|+
T Consensus 282 ~~~~~~~~--~~~~l~~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~ 358 (367)
T 3nyt_A 282 AQYTVRMD--NRESVQASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALT 358 (367)
T ss_dssp SSEEEECS--SHHHHHHHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeC--CHHHHHHHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 3445554 678899999999 9998866431211111121 04689999999999999999999987
Q ss_pred HHH
Q 012718 449 ETV 451 (458)
Q Consensus 449 ~~~ 451 (458)
+.-
T Consensus 359 ~~~ 361 (367)
T 3nyt_A 359 NLE 361 (367)
T ss_dssp C--
T ss_pred HHh
Confidence 653
No 162
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.96 E-value=4e-28 Score=237.50 Aligned_cols=329 Identities=13% Similarity=0.126 Sum_probs=232.4
Q ss_pred eEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
..|+|..+. +..++.+.+++.+.+........ . ...+..+++++.+++++|.+ ++++|+|+++|
T Consensus 39 ~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~---~----~~~~~~~~l~~~la~~~~~~---~v~~~~gg~~a 108 (406)
T 4adb_A 39 KEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGN---G----YTNEPVLRLAKKLIDATFAD---RVFFCNSGAEA 108 (406)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT---T----SCCHHHHHHHHHHHHHSSCS---EEEEESSHHHH
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccC---C----cCCHHHHHHHHHHHhhCCCC---eEEEeCcHHHH
Confidence 345665433 34588999999988765322111 0 11344678899999999865 89999999999
Q ss_pred HHHHHHHcCCC---CC-CCCCEEEEcCCCCccchHHHHHHHHH---------cCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 142 INLVAYSWGLS---NL-KSGDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 142 ~~~~~~~l~~~---~~-~~g~~vl~~~~~~~s~~~~~~~~a~~---------~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
+..++.++... .- ..+++|++.+++|++........... .+..+..++.. |+++|++.++++
T Consensus 109 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~ 183 (406)
T 4adb_A 109 NEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDDS 183 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCSTT
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcCC
Confidence 99999876200 00 23489999999999876444332110 01244555543 899999999989
Q ss_pred ceEEEEecccCcCcccc-----cHHHHHHHHHhcCcEEEEecccc-CCcc--c--CCCCCCCCcEEEecccCCCCCCc--
Q 012718 209 TKLVVIHHISNMLASIL-----PIEEIVHWSHDVGAKVLVDACQS-VPHM--V--VDVQGLDADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~-----~l~~i~~l~~~~~~~vivD~a~~-~g~~--~--~~~~~~~~d~~~~s~~K~~gp~g-- 276 (458)
+++|+++ |+||+|.++ ++++|.++|++||+++|+|++|+ ++.. + .+.....+|++ ++||.++ .|
T Consensus 184 ~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r 259 (406)
T 4adb_A 184 TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFP 259 (406)
T ss_dssp EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSC
T ss_pred eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCC
Confidence 9999999 889999876 38899999999999999999996 3221 1 11223346777 4699777 45
Q ss_pred eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012718 277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYL 356 (458)
Q Consensus 277 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l 356 (458)
+|++++++++++.+.+...+. ..+.+.....++.++++.+.. +++.++++++++++
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l 315 (406)
T 4adb_A 260 VGALLATEECARVMTVGTHGT---------------------TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWF 315 (406)
T ss_dssp CEEEEECHHHHHTCCTTSSCC---------------------SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHHhhhccCCcCC---------------------CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Confidence 999999998887776543211 124566666666666765533 67788888888888
Q ss_pred HHHHhcCCC-EEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 357 YENLLSIPN-IRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 357 ~~~L~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
.+.|+++.. +...... ...+.++++.+++. +..++.+.|.++ ||.++++. ++++|++++
T Consensus 316 ~~~l~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------------~~~iRi~~~ 378 (406)
T 4adb_A 316 VERLNTINHRYGLFSEV----RGLGLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG------------GNVVRFAPA 378 (406)
T ss_dssp HHHHHHHHHHHCCEEEE----EEETTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS------------TTEEEECCC
T ss_pred HHHHHHHHHhCCCceEE----EEEEEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC------------CCeEEEECC
Confidence 888876411 1000011 12366888988753 578899999988 99998764 679999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 433 FYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..++++|+++++++|+++++++.+
T Consensus 379 ~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 379 LNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999987754
No 163
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.96 E-value=6.4e-29 Score=250.56 Aligned_cols=358 Identities=14% Similarity=0.062 Sum_probs=235.4
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CC--CCCcEEEeCCh
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--AS--DSGEIVFTKNA 138 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~--~~~~v~~t~g~ 138 (458)
+++.|..+..+..++.+++++.+.+.... +. .. .....++++.+++++ + .+ ++++|++|+|+
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~~~~~-y~--~~-------~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~ 173 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGAVANN-YP--VP-------DRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGG 173 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTCS-CC--SS-------SSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHH
T ss_pred hheeccCCCCCcCCcHHHHHHHHHHHhCC-CC--CC-------cccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCH
Confidence 45667777766667777777766665321 11 00 011224555555555 2 22 22489999999
Q ss_pred hHHHHHHHHHcCC-CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----CCCCCHHHHHHhhcCCceEEE
Q 012718 139 TEAINLVAYSWGL-SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----DESPDLDKLKEMLSRKTKLVV 213 (458)
Q Consensus 139 t~a~~~~~~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----~~~~d~~~l~~~l~~~~~~v~ 213 (458)
|+|+.+++.++.. ..+++||+|+++.|+|++. ...++..|++++.++++. ++.+|+++|++.+++++++|+
T Consensus 174 t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~ 249 (533)
T 3f6t_A 174 TAAIVYAFHSLAENHLLKKGDKIAINEPIFTPY----LRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALI 249 (533)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHH----HTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHH----HHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEE
Confidence 9999999987200 0168999999999999953 555566789999999863 467899999999999999999
Q ss_pred EecccCcCcccccHH---HHHHHHH-hcCcEEEEeccccCCccc-CCCC--CCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 214 IHHISNMLASILPIE---EIVHWSH-DVGAKVLVDACQSVPHMV-VDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 214 ~~~~~n~tG~~~~l~---~i~~l~~-~~~~~vivD~a~~~g~~~-~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
+++++||||.++|.+ +|+++|+ ++|+++|+|++|+..... ..+. ..+.+++++|+||.+|++| +|++++++
T Consensus 250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~ 329 (533)
T 3f6t_A 250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNE 329 (533)
T ss_dssp EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEES
T ss_pred EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECc
Confidence 999999999999965 8888888 689999999999832211 1111 1236699999999999888 99999998
Q ss_pred c-----ccccCCCccc--------cCcceEe--eecCC--CCCCCCCCccCCCCCCHHHHHHHH-HHHHHHH--------
Q 012718 285 D-----LLSAMPPFLG--------GGEMISD--VFLDH--STFADPPSRFEAGTPAIGEAIGLG-AAIDYLS-------- 338 (458)
Q Consensus 285 ~-----~~~~l~~~~~--------g~~~~~~--~~~~~--~~~~~~~~~~~~gt~~~~~~~~l~-~al~~~~-------- 338 (458)
+ +++.+.+... ....... .+.+. .... ....+..++++.....++. .++..+.
T Consensus 330 ~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~-~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~ 408 (533)
T 3f6t_A 330 KNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSR-SIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSD 408 (533)
T ss_dssp SCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHT-TTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTB
T ss_pred HHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHH-HHHHhcccCCChHHHHHHHHHHHHHHhhhccccch
Confidence 7 5555432100 0000000 00000 0000 0111223344544444422 1334442
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----------------CChHHHHHHHhh
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----------------IHPTDIATLLDQ 401 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~l~~ 401 (458)
...+++.+++++++++++.+.|. + ++.+..+. .+.++++.++. .+..++...+.+
T Consensus 409 ~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~------~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~ 480 (533)
T 3f6t_A 409 DPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTN------THYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAE 480 (533)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTB------CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCC------ceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHH
Confidence 11257788889999999999997 5 44433322 24577777652 345566666654
Q ss_pred hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 402 QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 402 ~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++||.+.+|..|..+ ++++|+|++. .+++|+++++++|.++++++.
T Consensus 481 ~~GV~v~pg~~f~~~-------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 481 KNGVVLVDGVGFGAK-------PGELRVSQAN-LPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp HTTSSSCTTEEECSS-------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEeCCcccCCC-------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHHH
Confidence 449999999876542 5799999975 588999999999999988764
No 164
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.96 E-value=2.2e-29 Score=244.84 Aligned_cols=341 Identities=12% Similarity=0.089 Sum_probs=226.1
Q ss_pred CCCCcccccccCCCCeEEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHH-----HHHHHHHHHHcCC
Q 012718 53 PDFPILHQEVYGSKKLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY-----ELARKKVAAFINA 126 (458)
Q Consensus 53 ~~f~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~la~~~g~ 126 (458)
+.||...... ++++++|+.+.... .|+.+.+++.+... ...+. +. .++...... .++|+++|++++.
T Consensus 11 ~~~~~~~~~~--~~~~i~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~--~~--~~Y~~~~G~~~~~~~~lr~aia~~~~~ 83 (391)
T 3bwn_A 11 EKISNKNIPM--SDFVVNLDHGDPTAYEEYWRKMGDRCTVT-IRGCD--LM--SYFSDMTNLCWFLEPELEDAIKDLHGV 83 (391)
T ss_dssp -------CCT--TTSCEECSSCCCGGGHHHHHHTGGGSCEE-ECTTT--TC--SSCSCTTSSSTTSCHHHHHHHHHHHHH
T ss_pred cccCCCCccC--CCCeeEcCCCCCCCCCCHHHHHhHHHHhh-cCccc--hh--hcCCCCCCcccccCHHHHHHHHHHHHh
Confidence 4466543332 36789998887763 33333333311110 00000 10 111122233 6788999998873
Q ss_pred -----CCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCC
Q 012718 127 -----SDSGEIVFTKNATEAINLVAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPD 197 (458)
Q Consensus 127 -----~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d 197 (458)
.++++|++|+|+++++.+++.++ +++|| +|++++|+|. .+...++..|++++.++++.++. +
T Consensus 84 ~g~~~~~~~~i~~t~G~~~al~~~~~~l----~~~Gd~~~~~Vlv~~P~y~----~~~~~~~~~g~~~~~~~~d~~~l-~ 154 (391)
T 3bwn_A 84 VGNAATEDRYIVVGTGSTQLCQAAVHAL----SSLARSQPVSVVAAAPFYS----TYVEETTYVRSGMYKWEGDAWGF-D 154 (391)
T ss_dssp HCSBCCSSSEEEEEEHHHHHHHHHHHHH----HHTSSSSSEEEEECSSCCT----HHHHHHHTTCBTTEEEEEESTTC-C
T ss_pred cCCCCCCCCeEEEeCChHHHHHHHHHHh----cCCCCCCcceEEEcCCCch----hHHHHHHHcCCeEEEecCCHHHc-C
Confidence 23248999999999999999998 67899 9999999999 45667777899999888765432 1
Q ss_pred HHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-cCCCCCCCCcEEEecccCCCCCCc
Q 012718 198 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 198 ~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~~gp~g 276 (458)
.+++++|++++++||||.+++ +|++.++.++++||+|++|..+.. ++.. ..+.+++++|+||.+|++|
T Consensus 155 --------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 155 --------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKITGHAG 223 (391)
T ss_dssp --------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHHSCGG
T ss_pred --------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhcCCCc
Confidence 257899999999999999997 444422223499999999986432 2322 3467999999999999888
Q ss_pred --eeEEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH---------HhCHHH
Q 012718 277 --IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---------TIGMQK 344 (458)
Q Consensus 277 --~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---------~~g~~~ 344 (458)
+||+++ ++++++.+..... ....+++...+.++..+++... +..+++
T Consensus 224 lRiG~~~~~~~~l~~~l~~~~~---------------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 282 (391)
T 3bwn_A 224 SRIGWALVKDKEVAKKMVEYII---------------------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKY 282 (391)
T ss_dssp GCEEEEEECCHHHHHHHHHHHH---------------------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHH
T ss_pred cceEEEEecCHHHHHHHHHHhc---------------------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHH
Confidence 799998 7777666553321 0012455555556666665432 223778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc-------CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIYGPKPSEH-------VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
++++++++++++.+.|++++++++..+.+... ...+.++|+.+++ ...+.+.|.++ ||.+++|..|..
T Consensus 283 ~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~--~~~~~~~l~~~-gV~v~pg~~fg~-- 357 (391)
T 3bwn_A 283 GREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE--ETDLVSELRRH-KVMSRAGERCGS-- 357 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS--SCCHHHHHHHT-TEECEEGGGGTC--
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc--HHHHHHHHHHC-CEEEccCCCCCC--
Confidence 89999999999999999987887754432100 0113478888874 24566677766 999999986521
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.++++|||++ .+++++++++++|.+++++
T Consensus 358 -----~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 358 -----DKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp -----CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred -----CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 2679999999 5889999999999988764
No 165
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.96 E-value=1.4e-28 Score=243.20 Aligned_cols=299 Identities=21% Similarity=0.221 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..+++++.+++++|.+ ++++++||++|+..++. + +++||+|+++++.|++....+...++..|++++.++.+
T Consensus 134 ~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l~-~----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 205 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-L----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 205 (464)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHT-T----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHH-H----hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 5778999999999975 77888888999988775 4 68999999999999977655555567789999999875
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 271 (458)
|++++++++++++++|++++++||||.+.|+++|+++|+++|+++|+|++|+.|.....+ ++++|+++.|+||+
T Consensus 206 -----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~-~~~~div~~S~sK~ 279 (464)
T 1ibj_A 206 -----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATKF 279 (464)
T ss_dssp -----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTTT
T ss_pred -----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCEEEEECCccc
Confidence 899999999999999999999999999999999999999999999999999987651112 25799999999996
Q ss_pred C-CCCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 272 C-GPTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 272 ~-gp~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
+ |+.| +|++++++ ++++.+...... ..++.+.....++..+++.+... +++..+
T Consensus 280 ~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~---------------------~g~~~~~~~~~a~~~al~~~~~r-~~~~~~ 337 (464)
T 1ibj_A 280 IAGHSDVMAGVLAVKGEKLAKEVYFLQNS---------------------EGSGLAPFDCWLCLRGIKTMALR-IEKQQE 337 (464)
T ss_dssp TTCSSCCCCEEEEECSHHHHHHHHHHHHH---------------------TTCBCCHHHHHHHHHHHTTHHHH-HHHHHH
T ss_pred ccCCCCCcEEEEEEChHHHHHHHHHHHHh---------------------cCCCCCHHHHHHHHhchhhHHHH-HHHHHH
Confidence 5 4667 49999986 565555432210 01223333333333444322111 222223
Q ss_pred HHHHHHHHHHH----------HHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC-hHHHHHHHhhhcCeEeccCC----C
Q 012718 348 YEMELAKYLYE----------NLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH-PTDIATLLDQQYGVATRSGH----H 412 (458)
Q Consensus 348 ~~~~l~~~l~~----------~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~gi~~~~g~----~ 412 (458)
....+.+++.+ .|.++|++++..+.. ...+++++|.+.+.. ...+.+.|... ||.++.|. .
T Consensus 338 ~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~---~g~g~~~~~~l~~~~~~~~~~~~L~~~-gi~v~~G~~~sl~ 413 (464)
T 1ibj_A 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA---KGAGSVFSFITGSVALSKHLVETTKYF-SIAVSFGSVKSLI 413 (464)
T ss_dssp HHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC---SCCCSEEEEECSCHHHHHHHHHHCSSS-EECSCCCSSSCEE
T ss_pred HHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC---CCCceEEEEEECCHHHHHHHHHhcCcc-eEeecCCCCceee
Confidence 33333333332 333445555544331 134679999986422 23466677665 89888886 2
Q ss_pred CChhh----------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CAQPL----------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~~~~----------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|.+.. ...+|. ++++|+|++. ||++++++.|+++++++
T Consensus 414 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 414 SMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp ECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred ecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhhc
Confidence 22210 012333 5799999995 89999999999998754
No 166
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.96 E-value=3.2e-27 Score=231.94 Aligned_cols=322 Identities=16% Similarity=0.115 Sum_probs=228.0
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|.. ..+..++.+.+++.+.+....... . .+ ..+..+++++.+++++|.+ ++++|+|+++
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~-~~-----~~~~~~~l~~~la~~~g~~---~v~~~~ggte 125 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS-N-VF-----TNEPALRLGRKLIDATFAE---RVLFMNSGTE 125 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC-T-TS-----CCHHHHHHHHHHHHHSSCS---EEEEESSHHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc-C-cc-----CCHHHHHHHHHHHhhCCCC---eEEEeCCHHH
Confidence 34566653 234568899999999886532111 1 01 2355678889999999843 8999999999
Q ss_pred HHHHHHHHcCCCCC-----CCC-CEEEEcCCCCccchHHHHHHHHHcCCe------------EEEEeCCCCCCCCHHHHH
Q 012718 141 AINLVAYSWGLSNL-----KSG-DEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLK 202 (458)
Q Consensus 141 a~~~~~~~l~~~~~-----~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~------------~~~v~~~~~~~~d~~~l~ 202 (458)
|+..++.++.. . .+| ++|++.+++|++....+..+ .|.+ +..++.. |+++|+
T Consensus 126 A~~~al~~~~~--~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le 195 (420)
T 2pb2_A 126 ANETAFKLARH--YACVRHSPFKTKIIAFHNAFHGRSLFTVSV---GGQPKYSDGFGPKPADIIHVPFN-----DLHAVK 195 (420)
T ss_dssp HHHHHHHHHHH--HHHHHTCTTCCEEEEETTCCCCSSHHHHHH---SSCHHHHTTSSSCCSCEEEECTT-----CHHHHH
T ss_pred HHHHHHHHHHH--HhhhccCCCCCEEEEEeCCcCCcCHHHHHh---cCCccccccCCCCCCCeEEecCC-----CHHHHH
Confidence 99999987720 0 045 58999999999776443332 2322 5556543 899999
Q ss_pred HhhcCCceEEEEecccCcCccc-c---cHHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCCCCCCcEEEecccCCCC
Q 012718 203 EMLSRKTKLVVIHHISNMLASI-L---PIEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 203 ~~l~~~~~~v~~~~~~n~tG~~-~---~l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~~~~~d~~~~s~~K~~g 273 (458)
+.+++++++|++++++|++|.+ + ++++|.++|+++|+++|+|++|. ++.. .+ +.....+|++ |++|.+|
T Consensus 196 ~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~ 273 (420)
T 2pb2_A 196 AVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG 273 (420)
T ss_dssp HHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG
T ss_pred HHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc
Confidence 9999899999999999888862 3 38899999999999999999996 2211 11 1123357877 5789776
Q ss_pred C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 274 P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 274 p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
+ ..+|++++++++++.+.+...+. ..+.+.....++.++++.+.+ +.+.++++++
T Consensus 274 ~G~~iG~~~~~~~l~~~l~~~~~~~---------------------t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~ 329 (420)
T 2pb2_A 274 GGFPVSAMLTTQEIASAFHVGSHGS---------------------TYGGNPLACAVAGAAFDIINT---PEVLQGIHTK 329 (420)
T ss_dssp TTSCCEEEEECHHHHTTCC----CC---------------------EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHH
T ss_pred CCCceEEEEEhHHHHHhhcCCCcCc---------------------ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence 3 23999999988777665421110 114566666666677776653 5677888888
Q ss_pred HHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 353 AKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 353 ~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
.+++.+.|+++ +.+.... ..+.++++.++.. +..++.+.|.++ ||.+.++. ++
T Consensus 330 ~~~l~~~L~~~~~~~~~~~~~~-------~~g~~~~v~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~------------~~ 389 (420)
T 2pb2_A 330 RQQFVQHLQAIDEQFDIFSDIR-------GMGLLIGAELKPKYKGRARDFLYAGAEA-GVMVLNAG------------AD 389 (420)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEE-------EETTEEEEEECGGGTTCHHHHHHHHHHT-TEECEESS------------TT
T ss_pred HHHHHHHHHHHHhcCCCeEEEE-------ecceEEEEEECCCchHHHHHHHHHHHHC-CCEEEeCC------------CC
Confidence 88888888664 3333221 1267888888643 467899999987 99998763 57
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++|++++...+++|+++++++|+++++++
T Consensus 390 ~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 390 VMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999988899999999999999998765
No 167
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.96 E-value=2.3e-28 Score=240.29 Aligned_cols=338 Identities=13% Similarity=0.138 Sum_probs=225.6
Q ss_pred CCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
...++.+.+++.+.+.... .++....+..........+.+++.+++++|.++. .|++ ++|++|+..++.++ +
T Consensus 40 n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~v~~-~sGs~a~~~a~~~~----~ 113 (420)
T 3gbx_A 40 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA-NVQP-HSGSQANFAVYTAL----L 113 (420)
T ss_dssp CCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE-ECCC-SSHHHHHHHHHHHH----C
T ss_pred CCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc-eeEe-cCcHHHHHHHHHHh----c
Confidence 3478999999988764322 2221111111111234455577899999999753 4444 55689999999888 7
Q ss_pred CCCCEEEEcCCCCccchHHHHH-HHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHHHH
Q 012718 155 KSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 155 ~~g~~vl~~~~~~~s~~~~~~~-~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
++||+|+++.++|.+....... .....+...+.++.+.++.+|++++++++++ ++++|++++++|+ ...|+++|.+
T Consensus 114 ~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~ 191 (420)
T 3gbx_A 114 QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMRE 191 (420)
T ss_dssp CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHH
T ss_pred CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHH
Confidence 8999999999999874322111 1122345666777777788999999999987 6899999887775 5788999999
Q ss_pred HHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCC-CCCceeEEEEec---cccccCCCccccCcceEee
Q 012718 233 WSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKS---DLLSAMPPFLGGGEMISDV 303 (458)
Q Consensus 233 l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~---~~~~~l~~~~~g~~~~~~~ 303 (458)
+|++||+++|+|++|+.+.. +..+. .+|++++|+||++ ||.| |+++.++ ++.+.+......
T Consensus 192 l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~------- 261 (420)
T 3gbx_A 192 IADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFP------- 261 (420)
T ss_dssp HHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC--------
T ss_pred HHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCC-------
Confidence 99999999999999875543 22222 3899999999976 5665 9999987 444444322111
Q ss_pred ecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEE
Q 012718 304 FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALC 383 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v 383 (458)
...++++...+.++..++......+++++.+++.++++++.+.|.+. ++++..+.. .++++
T Consensus 262 -------------~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-----~~~~~ 322 (420)
T 3gbx_A 262 -------------SAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGT-----ENHLF 322 (420)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-----SSSEE
T ss_pred -------------CCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCC-----CCeEE
Confidence 11346667677777666655433346788999999999999999885 888765322 26678
Q ss_pred EEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHHHHHHHHhh
Q 012718 384 SFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 384 ~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~l~~~~~~~ 454 (458)
++.++ +.+...+.+.|.++ ||.+.+....... ...++ +..+|++++.. .+++|++++++.|++++++.
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~-~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 323 LLDLVDKNLTGKEADAALGRA-NITVNKNSVPNDP-KSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp EEECGGGTCCHHHHHHHHHHT-TEECEEECCTTCS-SCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCHHHHHHHHHHC-CcEeccccCCCCc-cccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 88775 45677888888877 9999873211100 00112 45699998754 35899999999999998653
No 168
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.93 E-value=3.3e-31 Score=258.20 Aligned_cols=329 Identities=16% Similarity=0.163 Sum_probs=237.2
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCChh
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNAT 139 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g~t 139 (458)
+++.|..+... ++++.+.+++.+.+... ...+. .. ..++++.+++++ | .++ ++|++|+|++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------~~~y~--~~--~~~l~~~la~~l~~~~g~~~~~-~~v~~~~g~~ 99 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-------VYGYT--YA--SDELLQAVLDWEKSEHQYSFDK-EDIVFVEGVV 99 (392)
Confidence 56777766654 56777888888776431 11111 11 446667777665 4 334 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CC--CCCCHHHHHHhhc-CCceEEEEe
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLS-RKTKLVVIH 215 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~--~~~d~~~l~~~l~-~~~~~v~~~ 215 (458)
+|+.+++.++ .++||+|+++.++|++.. ..++..|++++.++.+ ++ +.+|++.+++.++ .++++|+++
T Consensus 100 ~a~~~~~~~~----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~ 171 (392)
T 3b1d_A 100 PAISIAIQAF----TKEGEAVLINSPVYPPFA----RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLC 171 (392)
Confidence 9999999987 678999999999999653 4455668899999885 32 3479999999987 578899999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC---CCC--CCCcEEEecccCCCCCCc--eeEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD---VQG--LDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~---~~~--~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.... ... +.. .+.++++.|+||.+|..| +|+++
T Consensus 172 ~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 251 (392)
T 3b1d_A 172 NPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAI 251 (392)
Confidence 99999999998 88999999999999999999985321 112 222 456789999999888556 89999
Q ss_pred Eecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 282 GKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 282 ~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
++++ +++.+......+ ..++++.....++.++++.. ...+++++++++++++++.+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l 310 (392)
T 3b1d_A 252 IENPTLCAQFKHQQLVN--------------------NHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYF 310 (392)
Confidence 8754 776665433211 11234444455555555532 2236778888899999999999
Q ss_pred hc-CCCEEEeCCCCCCcCcccc-EEEEEeCC--CChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 361 LS-IPNIRIYGPKPSEHVQRAA-LCSFNVEN--IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 361 ~~-~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
++ ++++++..+. ++ ++++.++. .+..++.+.|. ++ ||.+.+|..+... .++++|++++.
T Consensus 311 ~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~l~~~~-gi~v~~g~~f~~~------~~~~iRi~~~~-- 374 (392)
T 3b1d_A 311 AQEAPRLKVMKPQ-------GTYLIWLDFSDYGLTDDALFTLLHDQA-KVILNRGSDYGSE------GELHARLNIAA-- 374 (392)
Confidence 87 6787765543 44 55677763 45678888886 56 9999988755321 25789999884
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNETVS 452 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~ 452 (458)
+++++++++++|.++++
T Consensus 375 ~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 375 PKSLVEEICKRIVCCLP 391 (392)
Confidence 68999999999998775
No 169
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.96 E-value=4.9e-27 Score=228.93 Aligned_cols=326 Identities=12% Similarity=0.105 Sum_probs=228.4
Q ss_pred eEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
.-|+|..+ .|..++.+.+++.+.+....... .....+..+++++.+++++|. +++++++||++|
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~ea 105 (395)
T 3nx3_A 36 KKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-------NLYYNENIAAAAKNLAKASAL---ERVFFTNSGTES 105 (395)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-------TTSBCHHHHHHHHHHHHHHTC---SEEEEESSHHHH
T ss_pred CEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-------cccCCHHHHHHHHHHHHhcCC---CeEEEeCCHHHH
Confidence 34666543 23468999999998876532111 011245567888999999983 399999999999
Q ss_pred HHHHHHHcCCCCC-----CCCCEEEEcCCCCccchHHHHHHH---------HHcCCeEEEEeCCCCCCCCHHHHHHhhcC
Q 012718 142 INLVAYSWGLSNL-----KSGDEVILTVAEHHSAIVPWQLVA---------QKTGANLKFLNLNDDESPDLDKLKEMLSR 207 (458)
Q Consensus 142 ~~~~~~~l~~~~~-----~~g~~vl~~~~~~~s~~~~~~~~a---------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 207 (458)
+..++.++.. . .++++|++.++.|++......... ...+.++..++.+ |+++|++++++
T Consensus 106 ~~~al~~~~~--~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~ 178 (395)
T 3nx3_A 106 IEGAMKTARK--YAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNE 178 (395)
T ss_dssp HHHHHHHHHH--HHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCT
T ss_pred HHHHHHHHHH--HhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccC
Confidence 9999887621 1 457899999999997653322210 0112456666654 89999999998
Q ss_pred CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCC-Cce
Q 012718 208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGP-TGI 277 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp-~g~ 277 (458)
++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+|+++ ++|.+++ .++
T Consensus 179 ~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~~ 256 (395)
T 3nx3_A 179 KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT--SAKALGCGLSV 256 (395)
T ss_dssp TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGTTTSCC
T ss_pred CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE--ecccccCCCce
Confidence 9999999999999999988 9999999999999999999987 43221 122233467664 6796553 348
Q ss_pred eEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKY 355 (458)
Q Consensus 278 G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~ 355 (458)
|++++++++ ++.+.+...+.. .+.+....++..++++.+.... .+++++....+.+.
T Consensus 257 G~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~ 315 (395)
T 3nx3_A 257 GAFVINQKVASNSLEAGDHGST---------------------YGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQS 315 (395)
T ss_dssp EEEEECHHHHHHHSCTTCCSSC---------------------BSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEEEchhhhhhhcCCcccCCC---------------------CCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999988 777765432211 2356666667777777665432 23334444444444
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~ 434 (458)
+.+.+..++.+..... .+.++++.+++. +..++.+.|.++ ||.++++. ++++|++++..
T Consensus 316 l~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------------~~~iRi~~~~~ 375 (395)
T 3nx3_A 316 LDELINEFDFCKKRKG-------LGFMQGLSLDKSVKVAKVIQKCQEN-ALLLISCG------------ENDLRFLPPLI 375 (395)
T ss_dssp HHHHHHHCTTEEEEEE-------ETTEEEEEECTTSCHHHHHHHHHHT-TEECEEET------------TTEEEECCCTT
T ss_pred HHHHHHhCCCeEEEEe-------EEEEEEEEeCCcchHHHHHHHHHHC-CCEEecCC------------CCEEEEECCCC
Confidence 4444444555543322 267888988753 677899999988 99998764 67999999988
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 012718 435 NTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~~~~ 453 (458)
.+++|+++++++|++++++
T Consensus 376 ~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 376 LQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 170
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.96 E-value=1.1e-26 Score=228.95 Aligned_cols=329 Identities=16% Similarity=0.188 Sum_probs=223.6
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .+..++.+.+++.+.+..... .... + ..+...++++.+++++|.+ +|+|++|+++
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~-~~~~-----~-~~~~~~~l~~~la~~~g~~---~v~~~~sGse 133 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI-CSRA-----F-FSVPLGICERYLTNLLGYD---KVLMMNTGAE 133 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC-CCTT-----S-EEHHHHHHHHHHHHHHTCS---EEEEESSHHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC-ccCC-----c-CCHHHHHHHHHHHhhcCCC---eEEEeCCHHH
Confidence 345666433 233788999999998765321 1111 1 2345567889999999743 8999999999
Q ss_pred HHHHHHHHcCC-----CCCCCC-CEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCCCCCCCCHHHHHHhh
Q 012718 141 AINLVAYSWGL-----SNLKSG-DEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 141 a~~~~~~~l~~-----~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
|+..++..+.. ..+.+| ++|++.+++|++.......+... .+ ..+..+|.. |++++++.+
T Consensus 134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l 208 (433)
T 1z7d_A 134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEEL 208 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHh
Confidence 99999987520 012456 89999999999765433322110 01 345556543 899999999
Q ss_pred -cCCceEEEEecccCcCcccc----cHHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCCC
Q 012718 206 -SRKTKLVVIHHISNMLASIL----PIEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 206 -~~~~~~v~~~~~~n~tG~~~----~l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~ 275 (458)
.+++++|+++.+++++|.+. ++++|.++|+++|+++|+|++|. ++... .+.....+|++ |++|.+|+.
T Consensus 209 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G 286 (433)
T 1z7d_A 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGG 286 (433)
T ss_dssp TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCC
Confidence 56889999998888899876 59999999999999999999997 32211 11123357876 678977642
Q ss_pred --ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 276 --GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 276 --g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
.+|++++++++++.+.+...+. ..+.+....+++.++++.+.+. .+.++.+++.
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~~~~~---------------------t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 342 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPGEHGS---------------------TYGGNPLAASICVEALNVLINE---KLCENAEKLG 342 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTTCCCC---------------------TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred CCCeEEEEECHHHHhhhccccccc---------------------cCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Confidence 3999999998877765421110 1245666677777788877653 4566777778
Q ss_pred HHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 354 KYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 354 ~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
+++.+.|+++ +.+.... ..+.++++.+++. +..++.+.|.++ ||.+.++. .+++
T Consensus 343 ~~l~~~L~~l~~~~~~~~~~~-------~~g~~~~i~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~i 402 (433)
T 1z7d_A 343 GPFLENLKRELKDSKIVRDVR-------GKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDVH------------DKTI 402 (433)
T ss_dssp HHHHHHHHHHHTTCTTEEEEE-------EETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEET------------TTEE
T ss_pred HHHHHHHHHHHHhCCCeEEEE-------eeeeEEEEEEccChhHHHHHHHHHHHC-CeEEecCC------------CCEE
Confidence 8887777653 3322211 2267888988753 467899999988 99998642 5789
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|++++..++++|+++++++|+++++++.+
T Consensus 403 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 403 RLTPPLCITKEQLDECTEIIVKTVKFFDE 431 (433)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred EEECCcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999889999999999999999887643
No 171
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=1.5e-27 Score=234.07 Aligned_cols=318 Identities=16% Similarity=0.172 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE-
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL- 188 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v- 188 (458)
....+++++.+++++|.+ ..+++++|++|+..++.++ +++||+|+++.++|++....+..+++..|++++.+
T Consensus 57 ~~~~~~l~~~la~~~g~~---~~v~~~sGt~A~~~~l~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL----AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred ChHHHHHHHHHHHHhCCC---ceEEecCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 356678999999999986 4456666799999999987 67999999999999998877766667889999998
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccc-cCCcccCCCCCCCCcEEEec
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ-SVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~-~~g~~~~~~~~~~~d~~~~s 267 (458)
+.+ |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++| +.|.. ......++|++++|
T Consensus 130 ~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-~~~~~~~~Di~~~s 203 (421)
T 2ctz_A 130 REE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAALVTHS 203 (421)
T ss_dssp TTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSEEEEE
T ss_pred CCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-CCccccCCeEEEEC
Confidence 764 899999999999999999999999999999999999999999999999999 87742 12224579999999
Q ss_pred ccCCCCCCc--eeEEEEec---cc----cccCCCccccCcceEee-ecCCCCCCCCCCccC----CC-CCCHHHHHHHHH
Q 012718 268 SHKMCGPTG--IGFLFGKS---DL----LSAMPPFLGGGEMISDV-FLDHSTFADPPSRFE----AG-TPAIGEAIGLGA 332 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~~~---~~----~~~l~~~~~g~~~~~~~-~~~~~~~~~~~~~~~----~g-t~~~~~~~~l~~ 332 (458)
+||+++++| +|++++.+ ++ ++.+.+...++...... ......+.. ..+++ .| ..+....+....
T Consensus 204 ~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~-~~r~~~~~~~g~~~~~~~a~~~~~ 282 (421)
T 2ctz_A 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV-KARVDGLRDQGQALGPFEAWVVLL 282 (421)
T ss_dssp TTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH-HHHHTHHHHHCCCCCHHHHHHHHH
T ss_pred CcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH-HHHHHHHHhcCCCCCHHHHHHHHc
Confidence 999776544 67777752 22 22333332222211000 000000000 00111 11 333333223223
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC-CCCCCc-----------CccccEEEEEeCCCChHHHHHHHh
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG-PKPSEH-----------VQRAALCSFNVENIHPTDIATLLD 400 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~-~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~~l~ 400 (458)
.++. +....++..++++++.+.|.++|+++.+. +..... ..++++++|.+.+. ..+..+.+.
T Consensus 283 ~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~-~~~~~~~~~ 356 (421)
T 2ctz_A 283 GMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG-YEAAKRFIS 356 (421)
T ss_dssp HHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH-HHHHHHHHH
T ss_pred Ccch-----HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCC-HHHHHHHHH
Confidence 3332 33344555689999999999999998763 221000 24577999999852 233333333
Q ss_pred hh--cCeEeccCCCCC------hhh--------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 401 QQ--YGVATRSGHHCA------QPL--------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 401 ~~--~gi~~~~g~~~~------~~~--------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+. +++.++.|..++ ... ...+|. ++.||+|++. +|++.+++.|++++
T Consensus 357 ~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 357 RLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp TCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHT
T ss_pred hCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHh
Confidence 22 245556563222 111 334454 5899999997 57777777777665
No 172
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=4.4e-28 Score=238.26 Aligned_cols=327 Identities=14% Similarity=0.068 Sum_probs=222.8
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCC--cEE
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSG--EIV 133 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~--~v~ 133 (458)
+++.|..| ...++++.+.+++.+.+...... . + .......++|++++++++.. .++ +|+
T Consensus 50 ~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~--~--Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 121 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPR--G--Y----LPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTA 121 (420)
T ss_dssp SCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCC--C--C----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCC--C--C----CCCCCcHHHHHHHHHHhcCCCccccccCceEEE
Confidence 45566555 44466699999999988651110 0 0 11223457888888887542 234 799
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC--CCCCCCCHHHHHHhhc---CC
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLS---RK 208 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~---~~ 208 (458)
+|+|+|+|+.+++..+. .+++||+|++++|+|++ +...++..|++++.++. ++++.+|++.+++.++ ++
T Consensus 122 ~t~G~t~al~~~~~~~~--~~~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 195 (420)
T 4f4e_A 122 QALGGTGALKIGADFLR--TLNPKAKVAISDPSWEN----HRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPG 195 (420)
T ss_dssp EEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCHH----HHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTT
T ss_pred ECCccHHHHHHHHHHHH--HhCCCCEEEEeCCCcHh----HHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCC
Confidence 99999999999954221 15799999999999994 45666778999999998 3467889999999998 57
Q ss_pred ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcccC-----C---C-CCCCCcEEEecccCCCCCCc
Q 012718 209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV-----D---V-QGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~-----~---~-~~~~~d~~~~s~~K~~gp~g 276 (458)
++++++++++||||.+++ +++|+++|+++|+++|+|++|+...... . + ...+.++++.|+||.+|++|
T Consensus 196 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 275 (420)
T 4f4e_A 196 TIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG 275 (420)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC
Confidence 899999999999999988 6688999999999999999987433210 0 1 12357899999999999888
Q ss_pred --eeEEEEe---ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-----HhCHHHHH
Q 012718 277 --IGFLFGK---SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQKIH 346 (458)
Q Consensus 277 --~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~~~ 346 (458)
+|++++. ++.++.+....... .+...++++.....++...+.... ...+++++
T Consensus 276 ~RiG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 338 (420)
T 4f4e_A 276 ERVGALSIITDSKDEAARVLSQLKRV-----------------IRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR 338 (420)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHHH-----------------HhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8998752 23222211000000 001112333334444434443210 12267888
Q ss_pred HHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC
Q 012718 347 AYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~ 423 (458)
++++++++++.+.|+++ +++++..+. .+.++++.+ +...+.+.+.++ ||.+.++
T Consensus 339 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~g~~~~~~~---~~~~~~~~l~~~-gI~v~~~------------- 395 (420)
T 4f4e_A 339 DRIRAMRNGLVERLKAAGIERDFSFINAQ------RGMFSYSGL---TSAQVDRLREEF-GIYAVST------------- 395 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCTHHHHS------CSSEEECCC---CHHHHHHHHHHH-CEECCTT-------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceeECCC------ccEEEEeCC---CHHHHHHHHHhC-CEEecCC-------------
Confidence 99999999999999876 355544333 144555544 456666677777 9998753
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 424 NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 424 ~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.|++++. .+.+++++++++|++++
T Consensus 396 ---~Ris~~~-~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 396 ---GRICVAA-LNTRNLDVVANAIAAVL 419 (420)
T ss_dssp ---SEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ---CeEEEec-CCHHHHHHHHHHHHHHh
Confidence 2999975 46678999999999876
No 173
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.96 E-value=1.5e-28 Score=239.90 Aligned_cols=328 Identities=11% Similarity=0.046 Sum_probs=222.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHH-HHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCC--c
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSG--E 131 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~--~ 131 (458)
++++.|..| ...+.++.+.+++.+ .+...... .+ .......++|+.++++++.. ..+ +
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~----~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~ 97 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGAS----LY----LPMEGLNCYRHAIAPLLFGADHPVLKQQRVA 97 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCC----CC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccc----cC----CCCCchHHHHHHHHHHHhcCCcccccccceE
Confidence 345666555 444566999999998 66531110 00 11223457888888888652 234 7
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC--CCCCCCCHHHHHHhhc---
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLS--- 206 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~--- 206 (458)
|++|+|+|+|+++++..+. .+++||+|+++.|+|++ +...++..|++++.++. ++++.+|++++++.++
T Consensus 98 i~~t~g~~~a~~~~~~~~~--~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 171 (397)
T 3fsl_A 98 TIQTLGGSGALKVGADFLK--RYFPESGVWVSDPTWEN----HVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ 171 (397)
T ss_dssp EEEESHHHHHHHHHHHHHH--HHCTTCCEEEESSCCHH----HHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC
T ss_pred EEEcCCcHHHHHHHHHHHH--hcCCCCeEEEeCCCchh----HHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC
Confidence 8999999999999954321 15799999999999994 45666778999999998 3567889999999998
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-----C---CC-CCCCCcEEEecccCCCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----V---DV-QGLDADFLVASSHKMCGP 274 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~---~~-~~~~~d~~~~s~~K~~gp 274 (458)
++++++++++++||||.+++ +++|+++|+++|+++|+|++|+..... . .+ ...+.++++.|+||.+|+
T Consensus 172 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 251 (397)
T 3fsl_A 172 AGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSL 251 (397)
T ss_dssp TTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccC
Confidence 57799999999999999988 558999999999999999999854321 0 11 233467889999999998
Q ss_pred Cc--eeEEEEec---cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-----HHhCHHH
Q 012718 275 TG--IGFLFGKS---DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-----STIGMQK 344 (458)
Q Consensus 275 ~g--~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-----~~~g~~~ 344 (458)
+| +|++++.. +.++.+....... .+...++++.....++..++... ....+++
T Consensus 252 ~G~riG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 314 (397)
T 3fsl_A 252 YGERVGGLSVMCEDAEAAGRVLGQLKAT-----------------VRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEE 314 (397)
T ss_dssp GGGCCEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEecCCHHHHHHHHHHHHHH-----------------HHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 78 89998632 2222221100000 00112233433444444344321 0223678
Q ss_pred HHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 345 IHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
.+++++++++++.+.|++++ ++++..+. .+.++++.+ +...+.+.+.++ ||.+.+|.
T Consensus 315 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~l~~~-gi~v~~g~---------- 374 (397)
T 3fsl_A 315 MRTRILAMRQELVKVLSTEMPERNFDYLLNQ------RGMFSYTGL---SAAQVDRLREEF-GVYLIASG---------- 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCTHHHHC------CSSEEECCC---CHHHHHHHHHTT-CEECCTTC----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeecCC------ceEEEecCC---CHHHHHHHHHhC-CEEECCCC----------
Confidence 88999999999999998763 45544332 144555544 355666677766 99998652
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
|++++. .+++||++++++|++++
T Consensus 375 ------Ris~~~-~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 375 ------RMCVAG-LNTANVQRVAKAFAAVM 397 (397)
T ss_dssp ------EEEGGG-CCTTTHHHHHHHHHHHC
T ss_pred ------eEEEEe-cCHhhHHHHHHHHHhhC
Confidence 999975 35688999999998763
No 174
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.96 E-value=1.2e-27 Score=231.25 Aligned_cols=324 Identities=15% Similarity=0.101 Sum_probs=218.4
Q ss_pred CeEEecCC-CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+++.+..+ +..++++.+.+++..+ + ++ ....+.+++.+++++|+++++++++++|+|+|+..+
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~~~----------~----~~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~ 92 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLNTY----------I----GS--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT 92 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHTST----------T----HH--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHHHh----------c----Cc--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH
Confidence 34434433 3458889998888511 1 01 122356777778899985334899999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceE-EEEecccCcCc-c
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKL-VVIHHISNMLA-S 223 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~-v~~~~~~n~tG-~ 223 (458)
+.++ +||+|+++.++|++....+. .++..|++++.+ .|++++++. ++++++ |++++++|||| .
T Consensus 93 ~~~~------~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~ 157 (374)
T 2aeu_A 93 ILAL------KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIE 157 (374)
T ss_dssp HHHH------CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCC
T ss_pred HHhC------CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCC
Confidence 9865 79999999999988665444 667789999888 288999988 778999 99999999999 8
Q ss_pred cccHHHHHHHHHhcCcEEEEeccccCCcc-cC-C--CCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcc
Q 012718 224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV-D--VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEM 299 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~-~--~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~ 299 (458)
..++++|.++|+++|+++|+|++|+.+.. +. . ....++|++++|+||++++.++|++++++++++.+......
T Consensus 158 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~--- 234 (374)
T 2aeu_A 158 LENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTK--- 234 (374)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHT---
T ss_pred cccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHHHHhhcc---
Confidence 88899999999999999999999986531 11 1 11246899999999976655799999999887766533210
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH----HHHHHHHHhcC---CCEEEeCCC
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL----AKYLYENLLSI---PNIRIYGPK 372 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l----~~~l~~~L~~~---~~~~~~~~~ 372 (458)
+ .++++.....++..+++.+....+.+..+..+.+ .+.+.+.|..+ +++.+...+
T Consensus 235 -----------------~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~ 296 (374)
T 2aeu_A 235 -----------------F-GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTP 296 (374)
T ss_dssp -----------------T-TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECS
T ss_pred -----------------c-cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCC
Confidence 1 1245665666666666654211123333444444 46666766654 356653332
Q ss_pred CCCcCccccEEEE-EeCCC-C---hHHHHHHH-hhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC-CCCHHHHHHHHH
Q 012718 373 PSEHVQRAALCSF-NVENI-H---PTDIATLL-DQQYGVATRSGHHCAQPLHRYLGVNASARASLHF-YNTKEDVDEFIH 445 (458)
Q Consensus 373 ~~~~~~~~~~v~~-~~~~~-~---~~~~~~~l-~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~-~~t~~di~~l~~ 445 (458)
. +.+++. ..... . ..+++..+ .++ ||.+.+|..+. +..+++||+++. ...+.+++++.+
T Consensus 297 -~-----g~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gV~v~~g~~~~-------~~~~~lRi~~~~~~~~~~~l~~l~~ 362 (374)
T 2aeu_A 297 -T-----GFVIKRVYKDDTINIKKLIEIGFNLLKNY-GIITITVAGMP-------GASKSLRIDLTSRDAERIDDNYIIK 362 (374)
T ss_dssp -S-----EEEEEEEESSHHHHHHHHHHHHHHHHHHH-CEECSTTSSSC-------SSCCSEEEETTSGGGGGSCHHHHHH
T ss_pred -c-----eEEEEeecccccccccchHHHHHHHHHhC-CEEEecCCCCC-------CCCCeEEEEcCCchHHHHHHHHHHH
Confidence 1 444333 23210 0 11255444 456 99999875321 125689999874 223345999999
Q ss_pred HHHHHHHhhhc
Q 012718 446 ALNETVSFFNV 456 (458)
Q Consensus 446 ~l~~~~~~~~~ 456 (458)
.|+++++++.+
T Consensus 363 ~l~~~l~~~~~ 373 (374)
T 2aeu_A 363 AIVESIKMAFK 373 (374)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999987653
No 175
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.96 E-value=3e-26 Score=226.06 Aligned_cols=328 Identities=12% Similarity=0.127 Sum_probs=230.8
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .+..++.+.+++.+.+..... .... + ..+..+++++.+++++|.+ +++|++|+++
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~-~~~~-~-----~~~~~~~l~~~la~~~g~~---~v~~~~sGse 144 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL-TSRA-F-----YNNVLGEYEEYITKLFNYH---KVLPMNTGVE 144 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC-CCTT-S-----EESSHHHHHHHHHHHHTCS---EEEEESSHHH
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc-ccCc-c-----CCHHHHHHHHHHHHhcCCC---EEEEeCCHHH
Confidence 445666543 222788999999998765321 1111 1 1234557888999998743 8999999999
Q ss_pred HHHHHHHHcCC-----CCCCCC-CEEEEcCCCCccchHHHHHHHH----HcC-----CeEEEEeCCCCCCCCHHHHHHhh
Q 012718 141 AINLVAYSWGL-----SNLKSG-DEVILTVAEHHSAIVPWQLVAQ----KTG-----ANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 141 a~~~~~~~l~~-----~~~~~g-~~vl~~~~~~~s~~~~~~~~a~----~~g-----~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
|+..++.++.. ....+| ++|++.+++|++.......+.. +.+ ..+..+|.. |++++++.+
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l 219 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERAL 219 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHh
Confidence 99999987620 012356 8999999999977543322210 011 456667654 899999999
Q ss_pred c-CCceEEEEecccCcCcccc----cHHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCCC
Q 012718 206 S-RKTKLVVIHHISNMLASIL----PIEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 206 ~-~~~~~v~~~~~~n~tG~~~----~l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~ 275 (458)
+ +++++|+++.+++++|.+. ++++|.++|++||+++|+|++|. ++... .+.....+|++ |++|.+|+.
T Consensus 220 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G 297 (439)
T 2oat_A 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGG 297 (439)
T ss_dssp TSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCC
Confidence 4 6788999988888899877 59999999999999999999995 32211 12223357876 788976652
Q ss_pred --ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 276 --GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 276 --g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
.+|++++++++++.+.+...+ . ..+.+....+++.++++.+.+. .+.++.+++.
T Consensus 298 ~~~~G~v~~~~~~~~~l~~~~~~--------------------~-t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 353 (439)
T 2oat_A 298 LYPVSAVLCDDDIMLTIKPGEHG--------------------S-TYGGNPLGCRVAIAALEVLEEE---NLAENADKLG 353 (439)
T ss_dssp SSCCEEEEECHHHHTTSCTTSSC--------------------C-SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred CCCeEEEEECHHHHhccCCCCcc--------------------c-CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHH
Confidence 399999999887776542111 0 1245666667777788877652 5678888999
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
+++.+.|+++ ++.+.... ...+.++++.+++ .+..++.+.|.++ ||.+.++. ++++|++
T Consensus 354 ~~l~~~L~~l-~~~~~~~~----~~~g~~~~v~l~~~~~~~~~~l~~~l~~~-Gv~v~~~~------------~~~iRi~ 415 (439)
T 2oat_A 354 IILRNELMKL-PSDVVTAV----RGKGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPTH------------GDIIRFA 415 (439)
T ss_dssp HHHHHHHTTS-CTTTEEEE----EEETTEEEEEECCCSSCCHHHHHHHHHHT-TEECCBSS------------SSEEEEC
T ss_pred HHHHHHHHHh-cCCCcEEE----EeeeeEEEEEEecCccHHHHHHHHHHHHC-CeEEecCC------------CCEEEEE
Confidence 9999999876 32111111 1236788888874 3467899999988 99998642 5789999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++..++++|+++++++|++++++
T Consensus 416 ~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 416 PPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHHHHh
Confidence 99889999999999999998865
No 176
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.95 E-value=4e-27 Score=230.24 Aligned_cols=315 Identities=18% Similarity=0.212 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+++++|.+ ..++++||++|+..++.++ +++||.|+++++.|++....+...++..|++++.++
T Consensus 81 ~p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~al----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~ 153 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGAL---GVLALGSGMAAISTAILTL----ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD 153 (430)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 456678999999999986 5677778899999999988 789999999999999887766667788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.. .+....++|+++.|++
T Consensus 154 ~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div~~S~s 227 (430)
T 3ri6_A 154 VM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIEVLSST 227 (430)
T ss_dssp TT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEEEEECC
T ss_pred CC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEEEECCc
Confidence 76 89999999999999999999999999999999999999999999999999998876 4445678999999999
Q ss_pred CCCCCCc---eeEEEEecc-ccccCCCccc---cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 270 KMCGPTG---IGFLFGKSD-LLSAMPPFLG---GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~-~~~~l~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
|++|++| .|+++.+.+ .+..-..+.. ..+.. .+... ......+...++.+....+.+...++. +
T Consensus 228 K~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~--~~i~~--~~~~~~~~~g~~~~~~~a~l~l~~l~~-----l 298 (430)
T 3ri6_A 228 KFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPM--AFLYK--ARKEVFQNLGPSLSPHNAYLQSLGLET-----M 298 (430)
T ss_dssp CEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGG--HHHHH--HHHTHHHHHCCCCCHHHHHHHHHHHHH-----H
T ss_pred ccccCCCCceEEEEEECChHHhhhccchhhhhhhhchh--hHHHH--HHHHHHHhcCCCCCHHHHHHHHhhhhh-----H
Confidence 9887664 566554332 1110000000 00000 00000 000000001223333222222223333 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCcC---------cccc-EEEEEeCC-CChHHHHHHHhhhcCeEeccC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEHV---------QRAA-LCSFNVEN-IHPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~~---------~~~~-~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g 410 (458)
....++..++++++.+.|++.|+++ +..|.-.... ..++ +++|.+++ ....++.+.+... ++.++.|
T Consensus 299 ~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~-~~~~s~G 377 (430)
T 3ri6_A 299 ALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLI-RRATNIH 377 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSS-EECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcc-eecCCCC
Confidence 3445666788899999999988877 4433311100 2367 99999983 1223444444433 5556666
Q ss_pred CCCCh------hhHh--------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 411 HHCAQ------PLHR--------YLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 411 ~~~~~------~~~~--------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+- ..+. ..|. ++.||+|++. ||++.+++.|++++
T Consensus 378 ~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 378 DNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp CSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 54432 1111 1232 6899999997 77777787777765
No 177
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=3.4e-26 Score=224.60 Aligned_cols=325 Identities=12% Similarity=0.073 Sum_probs=225.9
Q ss_pred CeEEecCCC------CCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCh
Q 012718 67 KLVYLDNAA------TSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNA 138 (458)
Q Consensus 67 ~~i~l~~~~------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~ 138 (458)
+..|+|..+ .++. ++.+.+++.+.+...... +... + ......++++.+++++|.+ ++ +|+||+|+
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~---~~~~--~-~~~~~~~l~~~la~~~~~~~~~-~v~~~~gg 113 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA---AAND--F-YNIPQLELAKKLVTYSPGNFQK-KVFFSNSG 113 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCC---SCSC--S-CCHHHHHHHHHHHHHSSCSSCE-EEEEESSH
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccc---cccc--c-CCHHHHHHHHHHHHhCCCCcCC-EEEEeCch
Confidence 345666543 2233 799999999988653211 1000 0 1233467888999999987 44 99999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----HcC-----CeEEEEeCCCCCC-------------
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTG-----ANLKFLNLNDDES------------- 195 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g-----~~~~~v~~~~~~~------------- 195 (458)
++|+..++.++.. . +|++|++.++.|++.......+.. +.+ ..++.++.+.++.
T Consensus 114 ~ea~~~ai~~~~~--~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~ 190 (419)
T 2eo5_A 114 TEAIEASIKVVKN--T-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSE 190 (419)
T ss_dssp HHHHHHHHHHHHT--T-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHH
T ss_pred HHHHHHHHHHHHH--h-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchh
Confidence 9999999987521 1 289999999999976544333211 111 3577888764422
Q ss_pred ---CCHHHHH-Hhhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCC
Q 012718 196 ---PDLDKLK-EMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQ 257 (458)
Q Consensus 196 ---~d~~~l~-~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~ 257 (458)
+|+++|+ +.++ +++++|+++..+|+||.+.+ +++|.++|++||+++|+|++|. ++... .+..
T Consensus 191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~ 270 (419)
T 2eo5_A 191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENF 270 (419)
T ss_dssp HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhc
Confidence 3688999 8886 45678888777788998776 9999999999999999999998 44321 1222
Q ss_pred CCCCcEEEecccCCCCC--CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID 335 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~gp--~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 335 (458)
...+|++ |++|.+|+ -++|+++++++++ .+ .... ....+.+...+.++.++++
T Consensus 271 ~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~---------------------~~t~~~n~~~~~aa~aal~ 325 (419)
T 2eo5_A 271 NTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMH---------------------SNTFGGNALACAIGSKVID 325 (419)
T ss_dssp TCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC----------------------------CCCCCHHHHHHHHHHHH
T ss_pred CCCCCEE--EecccccCCccceEEEEEchHhh-cC-Cccc---------------------CCCCCCCHHHHHHHHHHHH
Confidence 3346766 68896654 4589999999876 55 2111 0112456667777777777
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-C-CChHHHHHHHhhhcCeEeccCCCC
Q 012718 336 YLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-N-IHPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
.+.+ +.++++++++++.+.|.++ +... . ..+.++++.+. + .... +.+.|.++ ||.++++.
T Consensus 326 ~~~~-----~~~~~~~~~~~l~~~L~~~--~~~~--~-----~~g~~~~i~~~~~~~~~~-~~~~l~~~-Gv~v~~~~-- 387 (419)
T 2eo5_A 326 IVKD-----LLPHVNEIGKIFAEELQGL--ADDV--R-----GIGLAWGLEYNEKKVRDR-IIGESFKR-GLLLLPAG-- 387 (419)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHTTS--SSEE--E-----EETTEEEEECSCHHHHHH-HHHHHHHT-TEECEEET--
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHh--hhhe--E-----eeeEEEEEEEecCccHHH-HHHHHHHC-CCEEecCC--
Confidence 6543 7788889999999999875 1111 1 22678888873 2 1244 88888877 99998753
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++||+++...+++|+++++++|+++++++
T Consensus 388 ----------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 388 ----------RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5689999998899999999999999998764
No 178
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.95 E-value=5.9e-26 Score=224.16 Aligned_cols=354 Identities=17% Similarity=0.159 Sum_probs=231.2
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++++.|. ...+++.+.+++.+.+.... +.. ....+++++.+++++|.+ ++++++|||+|+.++
T Consensus 31 ~~~i~~~---~~~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~a 93 (437)
T 3bb8_A 31 KSVVPPS---GKVIGTKELQLMVEASLDGW-------LTT----GRFNDAFEKKLGEYLGVP---YVLTTTSGSSANLLA 93 (437)
T ss_dssp TSCBCSC---CCCCCHHHHHHHHHHHHHCC-------CBS----CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred CccccCC---CCCCCHHHHHHHHHHHHcCC-------cCC----ChHHHHHHHHHHHHHCCC---cEEEeCCHHHHHHHH
Confidence 3445552 33456788888888876421 111 235678999999999987 788999999999999
Q ss_pred HHHcCC-----CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 146 AYSWGL-----SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 146 ~~~l~~-----~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
+.++.. ..+++||+|+++.++|++.... +...|++++.+++++ ++.+|++++++.+++++++|++++
T Consensus 94 l~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~--- 166 (437)
T 3bb8_A 94 LTALTSPKLGVRALKPGDEVITVAAGFPTTVNP----TIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAH--- 166 (437)
T ss_dssp HHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHH----HHHTTCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEEC---
T ss_pred HHHhhhcccccccCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeC---
Confidence 998720 0167899999999999976544 445799999999876 688899999999998999999875
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCC--CcEEEecccCCCC-CCc-eeEEEEeccccccCCCccc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHKMCG-PTG-IGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s~~K~~g-p~g-~G~l~~~~~~~~~l~~~~~ 295 (458)
++|...++++|.++|+++|+++|+|++|+.|..+ +....+ .|+++.|++|..+ +.| +|+++.+++.+..+.....
T Consensus 167 ~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~~~~~d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~~~~ 245 (437)
T 3bb8_A 167 TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTY-DGKMAGTFGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFR 245 (437)
T ss_dssp GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TTEETTSSSSEEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHH
T ss_pred CCCChhcHHHHHHHHHHcCCEEEEECccccCceE-CCeecccccCEEEEECcCCcCCCCCCeEEEEeCCHHHHHHHHHHH
Confidence 3677799999999999999999999999988765 444445 7998888765333 223 6888887654433211111
Q ss_pred cCcce-------EeeecCC--CCCCCCCCcc-----------CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 296 GGEMI-------SDVFLDH--STFADPPSRF-----------EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 296 g~~~~-------~~~~~~~--~~~~~~~~~~-----------~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
+++.. ....... ..+...+.+| ..++.+....+++ ..+.. ++...++.+++.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l----~~l~~--~~~~~~~~~~~~~~ 319 (437)
T 3bb8_A 246 DWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL----AQLER--IEEFVEKRKANFKY 319 (437)
T ss_dssp BTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHH----HHHHH--HHHHHHHHHHHHHH
T ss_pred HhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHH----HHHHH--HHHHHHHHHHHHHH
Confidence 11110 0000000 0000111111 1222233322222 22332 24455556888999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccc---cEEEEEeC-CCChHHHHHHHhhhcCeEeccCCC--C-ChhhHhhcC------
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRA---ALCSFNVE-NIHPTDIATLLDQQYGVATRSGHH--C-AQPLHRYLG------ 422 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~---~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~--~-~~~~~~~~g------ 422 (458)
+.+.|++++++.+....... ...+ .++.+..+ +.+..++.+.|.++ ||.++.+.. | ..+.+..++
T Consensus 320 l~~~L~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-GI~v~~~~~~~~~~~p~~~~~~~~~~~~ 397 (437)
T 3bb8_A 320 LKDALQSCADFIELPEATEN-SDPSWFGFPITLKEDSGVSRIDLVKFLDEA-KVGTRLLFAGNLTRQPYFHDVKYRVVGE 397 (437)
T ss_dssp HHHHGGGGTTTEECCCCCTT-EECCCSSEEEEECGGGSSCHHHHHHHHHHT-TBCCBCCTTSSGGGSGGGSSCCCEECSC
T ss_pred HHHHhhccCCccccCCCCCC-CceeeEEEEEEECCcCcCcHHHHHHHHHHC-CCceeccCCcccccCchhhccCccccCC
Confidence 99999988776655322110 0001 13334443 56788999999998 999987653 2 112221111
Q ss_pred --C-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 423 --V-----NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 423 --~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
. .+.+|++++.++|++||+++++.|+++++
T Consensus 398 ~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 398 LTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 0 24699999999999999999999998865
No 179
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.95 E-value=4.5e-28 Score=237.63 Aligned_cols=331 Identities=14% Similarity=0.040 Sum_probs=227.3
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CC-----CCCCcEE
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NA-----SDSGEIV 133 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~~v~ 133 (458)
++++.|..+.. .++++.+.+++.+.+... ...+. + .......++|+++++++ +. +++ +|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~--y----~~~~g~~~lr~~la~~~~~~~~~~~~~~-~v~ 101 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS-SLNHE--Y----LPILGLAEFRTCASRLALGDDSPALQEK-RVG 101 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT-TCCCC--C----CCTTCCHHHHHHHHHHHHCTTCHHHHTT-CEE
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhCh-hhccC--C----CCCCCCHHHHHHHHHHHhcCCCCccCCC-cEE
Confidence 55677777653 356688889888775221 01110 0 11223458889999999 43 343 899
Q ss_pred E--eCChhHHHHHHHHHcCCCCCCCC-----CEEEEcCCCCccchHHHHHHHHHcCCe-EEEEeCC--CCCCCCHHHHHH
Q 012718 134 F--TKNATEAINLVAYSWGLSNLKSG-----DEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLN--DDESPDLDKLKE 203 (458)
Q Consensus 134 ~--t~g~t~a~~~~~~~l~~~~~~~g-----~~vl~~~~~~~s~~~~~~~~a~~~g~~-~~~v~~~--~~~~~d~~~l~~ 203 (458)
+ |+|+++|+.+++..+. .+++| |+|+++.++|++ +...++..|++ ++.++.+ +++.+|++++++
T Consensus 102 ~~~t~gg~~a~~~~~~~~~--~~~~g~~~~~d~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 102 GVQSLGGTGALRIGAEFLA--RWYNGTNNKDTPVYVSSPTWEN----HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp EEEEEHHHHHHHHHHHHHH--HHSSSSSCCCSCEEEEESCCTH----HHHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHH--HhCcCcCCCCCeEEEcCCCcHH----HHHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence 9 9999999999965321 14688 999999999995 45666778999 9999984 456789999999
Q ss_pred hhcC---CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------cCC-CC-CCCCcEEEec
Q 012718 204 MLSR---KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VVD-VQ-GLDADFLVAS 267 (458)
Q Consensus 204 ~l~~---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~~~-~~-~~~~d~~~~s 267 (458)
.+++ +++++++++++||||.++| +++|+++|+++|+++|+|++|..... ++. +. ..+.++++.|
T Consensus 176 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 255 (412)
T 1ajs_A 176 DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255 (412)
T ss_dssp HHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEe
Confidence 8875 6788889999999999988 56899999999999999999763211 111 21 1234588999
Q ss_pred ccCCCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH----
Q 012718 268 SHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---- 338 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---- 338 (458)
+||.+|+.| +|++++ +++.++.+....... .+...++++.....++..+++...
T Consensus 256 ~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 318 (412)
T 1ajs_A 256 FSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-----------------VRVTWSNPPAQGARIVARTLSDPELFHE 318 (412)
T ss_dssp CTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHHSHHHHHH
T ss_pred cccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-----------------HhcccCCCChHHHHHHHHHHcCcchhHH
Confidence 999999888 899999 665322211000000 011123345555566666666432
Q ss_pred -HhCHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCC
Q 012718 339 -TIGMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 339 -~~g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
...+++++++++++++++.+.|+++. ++++..+. .+.++++.+ +...+...+.++ ||.+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~l~~~-gv~v~~----- 383 (412)
T 1ajs_A 319 WTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQ------IGMFSFTGL---NPKQVEYLINQK-HIYLLP----- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHC------CSSEEECCC---CHHHHHHHHHTT-CEECCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCC------CceEEEeCC---CHHHHHHHHHhC-CEEecC-----
Confidence 22367888999999999999998873 35544332 134555443 344444555566 999874
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+|++++. .+++|+++++++|+++++++
T Consensus 384 -----------~~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 384 -----------SGRINMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp -----------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred -----------CcEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence 25999984 58899999999999998764
No 180
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.95 E-value=5.8e-27 Score=231.39 Aligned_cols=344 Identities=12% Similarity=0.109 Sum_probs=224.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHH-HHHHHHHHHHHHHcCCCCCC--cEEEeCChhHHHHHHHHH
Q 012718 74 AATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKAT-DEYELARKKVAAFINASDSG--EIVFTKNATEAINLVAYS 148 (458)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~la~~~g~~~~~--~v~~t~g~t~a~~~~~~~ 148 (458)
++..++++.+++++...+.+.. +++.. .++.+.... +..+.+++.+++++|++.++ ..++++|||+|+..++.+
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~-r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 4666789999999988876533 23321 222222322 33346789999999998642 235677999999999999
Q ss_pred cCCCCCCCCCEEEEcCCCCccchH-HHH---HHHHHcCCe--EEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCc
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIV-PWQ---LVAQKTGAN--LKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNM 220 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~-~~~---~~a~~~g~~--~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~ 220 (458)
+ +++||+|+++++.|.++.. .+. ..+...|.. ++.++++ +++.+|++++++.+.+ ++++|++..++|+
T Consensus 140 l----~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~ 215 (490)
T 2a7v_A 140 L----LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA 215 (490)
T ss_dssp H----CCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred H----cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC
Confidence 8 7999999999999875432 110 011223443 4445555 4588999999999864 7889888777665
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccc------
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLS------ 288 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~------ 288 (458)
...|+++|.++|+++|+++++|++|..|.. +..+. ++|++++|+||. .||.| |+++++++++.
T Consensus 216 --~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~ 290 (490)
T 2a7v_A 216 --RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG 290 (490)
T ss_dssp --SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTE
T ss_pred --CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhccccccc
Confidence 567999999999999999999999975432 22222 589999999995 46775 99999886421
Q ss_pred -----cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 289 -----AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 289 -----~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
.+...+.. .......|+++...++++.+++......+++++.+++.+++++|.+.|.+.
T Consensus 291 ~~~~~~l~~~i~~----------------~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~ 354 (490)
T 2a7v_A 291 REIPYTFEDRINF----------------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER 354 (490)
T ss_dssp EEEECCCHHHHHH----------------HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHH----------------HhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 01100000 000112367888888888888887654446888899999999999999987
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC----CCCCH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH----FYNTK 437 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~----~~~t~ 437 (458)
|+++...... ..++++.+. +.+..++.+.|.+. ||.+..+..+... ..+ .++.+|++.. ...++
T Consensus 355 -G~~v~~~~t~-----t~lv~vdl~~~g~~~~~~~~~L~~~-GI~v~~~~~p~d~--~p~-~~~~iRig~~a~t~~g~~~ 424 (490)
T 2a7v_A 355 -GYSLVSGGTD-----NHLVLVDLRPKGLDGARAERVLELV-SITANKNTCPGDR--SAI-TPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp -TCEEGGGSCS-----SSEEEEECTTTTCCHHHHHHHHHHT-TEECEEECCTTCC--CSS-SCSEEEEESHHHHHTTCCH
T ss_pred -CcEEecCCCC-----CeEEEEEeCCCCCCHHHHHHHHHhC-CeEEecCccCCCC--CCC-CCCceEecccccccCCCCH
Confidence 9988753211 457888875 45678888899887 9999754322110 011 1578999663 34689
Q ss_pred HHHHHHHHHHHHHHHh
Q 012718 438 EDVDEFIHALNETVSF 453 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~ 453 (458)
+|++++++.|.++++.
T Consensus 425 ~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 425 DDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998864
No 181
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=4e-27 Score=231.79 Aligned_cols=340 Identities=15% Similarity=0.134 Sum_probs=220.8
Q ss_pred CCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHH-HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKA-TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
..+.++.+.+++.+.+.... .++.. .+..+... ....+.+++.+++++|.+. ..++++||++|+..++.++
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~v~~~~Gs~a~~~al~~~--- 114 (425)
T 3ecd_A 41 ENIVSRAVLDAQGSVLTNKYAEGYPGK-RYYGGCEFADEVEALAIERVKRLFNAGH--ANVQPHSGAQANGAVMLAL--- 114 (425)
T ss_dssp CCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHH---
T ss_pred cCCCCHHHHHHHhhhhhcccccCCCcc-hhcCCChHHHHHHHHHHHHHHHHhCCCC--ceeecCchHHHHHHHHHHc---
Confidence 34458999999888764221 11110 11111111 1233445688999999873 3356899999999999988
Q ss_pred CCCCCCEEEEcCCCCccchHHHHH-HHHHcCCeEEEEeCCC-CCCCCHHHHHHhhc-CCceEEEEecccCcCcccccHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLND-DESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~-~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+++||+|+++.++|++....... .....+.+++.++.++ ++.+|++++++.+. .++++|++++++| |...++++
T Consensus 115 -~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~~ 191 (425)
T 3ecd_A 115 -AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFAR 191 (425)
T ss_dssp -CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHHH
T ss_pred -cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHHH
Confidence 78999999999999873321111 1122234566676663 37889999999997 4889999988777 56788999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCC--CCC-CCCcEEEecccCCCC-CCceeEEEEec-cccccCCCccccCcceEeee
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVD--VQG-LDADFLVASSHKMCG-PTGIGFLFGKS-DLLSAMPPFLGGGEMISDVF 304 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~--~~~-~~~d~~~~s~~K~~g-p~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~ 304 (458)
|.++|+++|+++|+|++|+.|..... ... ...|++++|+||+++ |. +|+++.++ ++.+.+......+
T Consensus 192 i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~------- 263 (425)
T 3ecd_A 192 FRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPG------- 263 (425)
T ss_dssp HHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC---------
T ss_pred HHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcc-------
Confidence 99999999999999999875543111 110 127899999999664 44 69999885 4444443222111
Q ss_pred cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEE
Q 012718 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~ 384 (458)
..++++.....++..++......+++.+.++.+++.+++.+.|.+. ++++..+.. .+.+++
T Consensus 264 -------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-----~~~~~~ 324 (425)
T 3ecd_A 264 -------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGT-----DNHLLL 324 (425)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-----SSSEEE
T ss_pred -------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCC-----CceEEE
Confidence 1245666666776666655544457788999999999999999886 888765432 266888
Q ss_pred EEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC----CHHHHHHHHHHHHHHHHhh
Q 012718 385 FNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN----TKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 385 ~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~----t~~di~~l~~~l~~~~~~~ 454 (458)
+.++ +.+...+.+.|.++ ||.++++..+.... .. ...+.+|++++.++ +++|++++++.|++++++.
T Consensus 325 ~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~p~~~~-~~-~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 325 VDLRPKGLKGAQVEQALERA-GITCNKNGIPFDPE-KP-TITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EECGGGTCCHHHHHHHHHHT-TEECEECCCTTCSS-CT-TTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHc-CCEecccccCCCCC-CC-CCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 8875 45677888888877 99998443211000 00 11468999955444 4899999999999998765
No 182
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.95 E-value=1.3e-26 Score=223.94 Aligned_cols=337 Identities=17% Similarity=0.123 Sum_probs=222.2
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHH-HHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKV-AAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+.++.+.+++.+.+... .+.. .....+++++++ |+++|. . +++++++|||+|+++++.++ .+++
T Consensus 13 ~~~~~i~~a~~~~~~~~-------~~~~---~~~~~~~l~~~~~a~~~g~-~-~~~v~~~sgt~al~~al~~l---~~~~ 77 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASH-------IYTN---YGPINQRFEQTIMSGFFQN-R-GAVTTVANATLGLMAAIQLK---KRKK 77 (377)
T ss_dssp CCGGGGHHHHHHHHHHT-------CCSS---SCHHHHHHHHHHHHHTSTT-C-SEEEEESCHHHHHHHHHHHH---SCTT
T ss_pred CCcHHHHHHHHHHHHcC-------Cccc---CCHHHHHHHHHHHHHHhCC-C-CeEEEeCCHHHHHHHHHHHc---CCCC
Confidence 45667788888877652 1110 013356888999 999993 2 28999999999999999987 3789
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhh-cCC--ceEEEEecccCcCcccccHHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEML-SRK--TKLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l-~~~--~~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
||+|+++.++|.+. ...+...|++++.++++ .++.+|++++++++ +++ +++|+ ++|++|...|+++|.+
T Consensus 78 Gd~Vi~~~~~~~~~----~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~ 150 (377)
T 3ju7_A 78 GKYALMPSFTFPAT----PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEE 150 (377)
T ss_dssp CCEEEEESSSCTHH----HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHH
T ss_pred cCEEEECCCCcHHH----HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHH
Confidence 99999999999965 44456679999999998 45889999999988 566 88887 4567999999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCCCCC---CCcEEEec--ccCCCCCCceeEEEEec-cccccCCCccccCcceEeeecC
Q 012718 233 WSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVAS--SHKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 233 l~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s--~~K~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
+|+ +|+++|+|++|++|... +.... ..|+.+.| .+|.+++...|+++.++ ++.+.+..+...+..
T Consensus 151 la~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~------- 221 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFD------- 221 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBC-------
T ss_pred HHh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCC-------
Confidence 999 99999999999988752 22222 24666666 56988763467777765 444444433221111
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSF 385 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~ 385 (458)
..+.....++..+..+....+ ++..+. .++...++.+++++++.+.|++++++.+....... ..... ++.+
T Consensus 222 -~~~~~~~~g~~~~~~~~~aa~----~~~~l~--~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~ 293 (377)
T 3ju7_A 222 -TNRECTMMGFNCKMSEYAAAI----GIATMK--KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKT-EAVIQQFMPI 293 (377)
T ss_dssp -TTSCBCSSCCBCCCCHHHHHH----HHHHHH--THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCC-SCBCCSSEEE
T ss_pred -CCCceeeccccCCCCHHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCC-CcceEEEEEE
Confidence 001111112222233322222 222232 36777888889999999999887543211111110 11122 4456
Q ss_pred EeCC-CChHHHHHHHhhhcCeEeccCCC--CC-hhhHhhc--CC--------CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 386 NVEN-IHPTDIATLLDQQYGVATRSGHH--CA-QPLHRYL--GV--------NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 386 ~~~~-~~~~~~~~~l~~~~gi~~~~g~~--~~-~~~~~~~--g~--------~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+++ .+.+++.+.|.++ ||.++.+.. |. .+.+... +. ...+|++++...|++|++++++.|++++
T Consensus 294 ~~~~~~~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 294 LCPEEVRNKQVIEDLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp ECCTTSCHHHHHHHHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC--
T ss_pred EeCChhhHHHHHHHHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 6664 3478999999998 999876541 11 1111111 11 4689999999999999999999999887
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
...
T Consensus 373 ~~~ 375 (377)
T 3ju7_A 373 VSA 375 (377)
T ss_dssp ---
T ss_pred hcc
Confidence 654
No 183
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.95 E-value=2.4e-27 Score=231.62 Aligned_cols=320 Identities=14% Similarity=0.076 Sum_probs=211.2
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC------CCCcEEE--eCChhHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS------DSGEIVF--TKNATEA 141 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~~v~~--t~g~t~a 141 (458)
|+|.....++.+.+.+++.+..... .+.. ... ....+++|++++++++.. ++ +|++ |+|+|+|
T Consensus 38 ~~d~~~~~~~~~~v~~a~~~~~~~~-~~~~-Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~v~t~G~~~a 108 (401)
T 7aat_A 38 YRDDNGKPYVLNCVRKAEAMIAAKK-MDKE-YLP------IAGLADFTRASAELALGENSEAFKSG-RYVTVQGISGTGS 108 (401)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTT-CCCC-CCC------TTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHHHHH
T ss_pred EECCCCCEechHHHHHHHHHhcccc-cccC-CCC------CCCCHHHHHHHHHHhcCCCccccccC-ceEEEecCcchHH
Confidence 3444444555677888887776521 1111 111 122457888888888654 43 8877 9999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhc---CCceEEEEec
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RKTKLVVIHH 216 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---~~~~~v~~~~ 216 (458)
+++++.++.. ..++||+|++++|+|.+. ...++..|++++.++++ .++.+|++.+++.+. ++++++++++
T Consensus 109 l~~~~~~l~~-~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~ 183 (401)
T 7aat_A 109 LRVGANFLQR-FFKFSRDVYLPKPSWGNH----TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHAC 183 (401)
T ss_dssp HHHHHHHHHH-HCTTCCEEEEEESCCTTH----HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESS
T ss_pred HHHHHHHHHH-hccCCCEEEEcCCCchhH----HHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCC
Confidence 9998876510 147899999999999954 55566779999999985 357889997776664 4779999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc--------CC--CCCCCCcEEEecccCCCCCCc--eeEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV--------VD--VQGLDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~--------~~--~~~~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
++||||.+++ +++|+++|+++|+++|+|++|...... +. ....+..+++.|+||.||++| +|+++
T Consensus 184 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~ 263 (401)
T 7aat_A 184 AHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFT 263 (401)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEE
Confidence 9999999988 678899999999999999998733221 10 123347789999999999888 89999
Q ss_pred Eec---c----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH--H-H--HhCHHHHHHHH
Q 012718 282 GKS---D----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY--L-S--TIGMQKIHAYE 349 (458)
Q Consensus 282 ~~~---~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~--~-~--~~g~~~~~~~~ 349 (458)
+.. + +.+.+...... . ..+++.....++..++.. + . ...+++.++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (401)
T 7aat_A 264 VICRDAEEAKRVESQLKILIRP--------------------M-YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRI 322 (401)
T ss_dssp EECSSHHHHHHHHHHHHHHHHH--------------------H-HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHHh--------------------c-cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 732 2 22222211110 0 112333222333223321 1 0 11256778899
Q ss_pred HHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCe
Q 012718 350 MELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 350 ~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~ 426 (458)
+++++++.+.|.++ +++++..+. .+.+++..+ +.+.+...+.+. ||.+.+ .
T Consensus 323 ~~~r~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~ll~~~-gi~v~~----------------~ 376 (401)
T 7aat_A 323 ISMRTQLVSNLKKEGSSHNWQHITDQ------IGMFCFTGL---KPEQVERLTKEF-SIYMTK----------------D 376 (401)
T ss_dssp HHHHHHHHHHHHHTTCCSCCHHHHHC------CSSEEECCC---CHHHHHHHHHHH-CEECCT----------------T
T ss_pred HHHHHHHHHHHHhcCCCCCCceecCC------cceEEecCC---CHHHHHHHHHhC-CEeccC----------------C
Confidence 99999999999876 124433332 133444433 345554444556 999853 3
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+|+|++..++ +||+++++.|++++
T Consensus 377 ~Ris~~~~~~-~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 377 GRISVAGVAS-SNVGYLAHAIHQVT 400 (401)
T ss_dssp CEEEGGGCCT-TTHHHHHHHHHHHH
T ss_pred CeEEeccCCh-hhHHHHHHHHHHHh
Confidence 6999986445 56999999999876
No 184
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.95 E-value=1.1e-28 Score=242.13 Aligned_cols=326 Identities=16% Similarity=0.110 Sum_probs=224.2
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHH-HHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC------CCCCcE
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA------SDSGEI 132 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~~v 132 (458)
++.+.|..+. ..++++.+.+++.+ .+... ..+ .+ .......++|+.++++++. +++ +|
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~--~y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i 99 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--YNH--EY----LGITGLPSLTSNAAKIIFGTQSDALQED-RV 99 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--CCC--CC----CCTTCCHHHHHHHHHHHHCTTCHHHHTT-CE
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--ccc--CC----CCCCCcHHHHHHHHHHHhcCCCCCCCcc-eE
Confidence 3456665543 34678889999888 65411 111 01 1122345788899988842 343 89
Q ss_pred EE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CC-CCCCCHHHHHHhhcCC
Q 012718 133 VF--TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-ND-DESPDLDKLKEMLSRK 208 (458)
Q Consensus 133 ~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~~ 208 (458)
++ |+|+++|+++++..+. .+++||+|+++.|+|++. ...++..|++++.++. ++ ++.+|++++++.++++
T Consensus 100 ~~~~t~g~~~a~~~~~~~~~--~~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 100 ISVQSLSGTGALHISAKFFS--KFFPDKLVYLSKPTWANH----MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp EEEEEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCTTH----HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred EEEeccchHhHHHHHHHHHH--HhCCCCEEEEeCCCCccH----HHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence 99 9999999999843221 146899999999999964 5556677999999998 43 5778999999998653
Q ss_pred ---ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc--------ccC-CCCCCC----CcEEEeccc
Q 012718 209 ---TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH--------MVV-DVQGLD----ADFLVASSH 269 (458)
Q Consensus 209 ---~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~--------~~~-~~~~~~----~d~~~~s~~ 269 (458)
+.++++++++||||.+++ +++|+++|+++|+++|+|++|.... .++ ++...+ .+++++|+|
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 253 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA 253 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccC
Confidence 456666999999999998 5678999999999999999996321 112 222122 468899999
Q ss_pred CCCCCCc--eeEEE--E-----ecc----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 270 KMCGPTG--IGFLF--G-----KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 270 K~~gp~g--~G~l~--~-----~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
|.+|+.| +|+++ . +++ +++.+.... +...++++.....++..+++.
T Consensus 254 K~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~~~a~~~~l~~ 312 (412)
T 1yaa_A 254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKII---------------------RSEVSNPPAYGAKIVAKLLET 312 (412)
T ss_dssp TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHHS
T ss_pred CCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHH---------------------hhccCCCChHHHHHHHHHhCC
Confidence 9999888 79998 6 444 444433211 111234566666666666654
Q ss_pred HH-----HhCHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEec
Q 012718 337 LS-----TIGMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATR 408 (458)
Q Consensus 337 ~~-----~~g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~ 408 (458)
.. ...+++++++++++++++.+.|+++. ++++..+. .+.++++. .+...+.+.+.++ ||.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~l~~~-gi~v~ 382 (412)
T 1yaa_A 313 PELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQ------CGMFSFTG---LTPQMVKRLEETH-AVYLV 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHC------CSSEEECC---CCHHHHHHHHHHH-CEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccC------ceEEEeeC---CCHHHHHHHHHhC-CEEec
Confidence 32 12477888999999999999998763 25554332 13344443 3455665555566 99986
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ ++||+++. .+++|+++++++|+++++.+
T Consensus 383 ~----------------~~Ris~~~-~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 383 A----------------SGRASIAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp T----------------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred c----------------CcEEEEcc-CCHhHHHHHHHHHHHHHHhh
Confidence 3 47999984 58999999999999998753
No 185
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.95 E-value=5.7e-28 Score=235.48 Aligned_cols=326 Identities=13% Similarity=0.074 Sum_probs=223.6
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CC--CCCCcEEE--
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NA--SDSGEIVF-- 134 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~~v~~-- 134 (458)
++.+.|..+.. .++++.+.+++.+.+... ..+. + .......++|+++++++ +. ++ ++|++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~--y----~~~~g~~~lr~~la~~~~~~~~~~-~~v~~~~ 96 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE--TTKT--Y----AGLSGEPEFQKAMGELILGDGLKS-ETTATLA 96 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC--CCCC--C----CCSSCCHHHHHHHHHHHHGGGCCG-GGEEEEE
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCCc--ccCC--C----CCCCCcHHHHHHHHHHHhCCCCCc-ccEEEEe
Confidence 45677776652 256789999998877541 1110 1 01122457888899887 54 34 38998
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcC---Cc
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR---KT 209 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~---~~ 209 (458)
|+|+++|+++++.++. .+.+||+|+++.++|++. ...++..|++++.++.+ +++.+|++.+++.+++ ++
T Consensus 97 ~~g~~~a~~~~~~~~~--~~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 170 (394)
T 2ay1_A 97 TVGGTGALRQALELAR--MANPDLRVFVSDPTWPNH----VSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGD 170 (394)
T ss_dssp EEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCHHH----HHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTC
T ss_pred cCCchhHHHHHHHHHH--hcCCCCEEEEcCCCChhH----HHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCC
Confidence 9999999999988762 134899999999999954 55566679999999985 4577899999999875 36
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-------cCC-CCCCC-CcEEEecccCCCCCCc-
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VVD-VQGLD-ADFLVASSHKMCGPTG- 276 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-------~~~-~~~~~-~d~~~~s~~K~~gp~g- 276 (458)
+++++++++||||.++| +++|+++|+++|+++|+|++|+.... ++. +...+ .+++++|+||.+|++|
T Consensus 171 ~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 250 (394)
T 2ay1_A 171 MVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE 250 (394)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGG
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCC
Confidence 78888999999999998 55789999999999999999985322 121 22222 4577889999999777
Q ss_pred -eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-----HhCHHHHHH
Q 012718 277 -IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQKIHA 347 (458)
Q Consensus 277 -~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~~~~ 347 (458)
+|++++ ++++++.+....... .+...++++.....++..+++... ...++++.+
T Consensus 251 riG~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~ 313 (394)
T 2ay1_A 251 RTGCLLALCADAATRELAQGAMAFL-----------------NRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313 (394)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHH-----------------HhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 699998 454433221110000 001122334445555555555320 123678888
Q ss_pred HHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 348 YEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
+++++++++.+.|+++. ++++..+. .+.++++.++ ...+.+.+.++ ||.+.++
T Consensus 314 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~g~~~~~~~~---~~~~~~~l~~~-gi~v~~~-------------- 369 (394)
T 2ay1_A 314 GMLRLREQLAGELRDLSGSDRFGFVAEH------RGMFSRLGAT---PEQVKRIKEEF-GIYMVGD-------------- 369 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTTHHHHC------CSSEEECCCC---HHHHHHHHHHH-CEECCTT--------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCeeEEcCC------ceEEEeeCCC---HHHHHHHHHhC-CEEecCC--------------
Confidence 99999999999987752 24443322 1446666543 45666667677 9998642
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+|++++ +++++|+++++++|+++
T Consensus 370 --~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 370 --SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp --CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred --CeEEee-cCCHhhHHHHHHHHHHc
Confidence 699998 47899999999999875
No 186
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.95 E-value=4.1e-26 Score=225.58 Aligned_cols=324 Identities=13% Similarity=0.074 Sum_probs=219.4
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+...... + ......+..+++++.++++++...+++++||+||++|+..++.++. ...+++
T Consensus 60 ~~p~v~~a~~~~~~~~~~~---~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~--~~~~~~ 131 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAGA---T---ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIV--KATGRS 131 (439)
T ss_dssp SCHHHHHHHHHHHHSCSCS---C---SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHH--HHHSCC
T ss_pred CCHHHHHHHHHHHHhccCc---c---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHH--HHhCCC
Confidence 6889999999988754211 1 0112245667888999999965542399999999999999998741 123567
Q ss_pred EEEEcCCCCccchHHHHHHHHHcC--C---------eEEEEeCCCCCCC-----CHHHHHHhh----cCCceEEEEeccc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTG--A---------NLKFLNLNDDESP-----DLDKLKEML----SRKTKLVVIHHIS 218 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g--~---------~~~~v~~~~~~~~-----d~~~l~~~l----~~~~~~v~~~~~~ 218 (458)
+|++.++.||+.......+..... . .+..++.+.++.. |+++|++.+ .+++++|+++.++
T Consensus 132 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~ 211 (439)
T 3dxv_A 132 GVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQ 211 (439)
T ss_dssp EEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSB
T ss_pred EEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence 899999999876543332211100 0 1123333322222 689999999 4578999999999
Q ss_pred CcCccccc----HHHHHHHHHhcCcEEEEecccc-CCc----ccCCCCCCCCcEEEecccCCCCC-CceeEEEEeccccc
Q 012718 219 NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPH----MVVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLS 288 (458)
Q Consensus 219 n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~----~~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~ 288 (458)
|++|.+.+ +++|.++|++||+++|+|++|+ ++. ...+.....+|++ |++|.+|+ ..+|++++++++++
T Consensus 212 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~~~~ 289 (439)
T 3dxv_A 212 SDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAEILD 289 (439)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHHHHh
Confidence 99999999 9999999999999999999997 321 1122223447776 78897764 23899999998887
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh----cCC
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL----SIP 364 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~----~~~ 364 (458)
.+.+...+ . .. .+...+.+..++++.+.+. .+.++++++.+++.+.|. ..+
T Consensus 290 ~~~~~~~~--------------------~-t~-~~~~~~~aa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ 344 (439)
T 3dxv_A 290 CASAFAMQ--------------------T-LH-GNPISAAAGLAVLETIDRD---DLPAMAERKGRLLRDGLSELAKRHP 344 (439)
T ss_dssp SCSSSSCC--------------------T-TT-TCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhcCCCcC--------------------C-Cc-ccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77643210 1 12 4555666666677766552 344445555555555544 445
Q ss_pred CEEEeCCCCCCcCccccEEEEEeC---------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVE---------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.+....+. +.++++.+. .....++.+.|.++ ||.+.++... .+++|++++...
T Consensus 345 ~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----------~~~iRi~~~~~~ 406 (439)
T 3dxv_A 345 LIGDIRGR-------GLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN----------GNVLEFTPPLTI 406 (439)
T ss_dssp TEEEEEEE-------TTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT----------SCEEEECCCTTC
T ss_pred CeEEEEEE-------EEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC----------CCEEEEECCCCC
Confidence 55443222 667777662 12246788888888 9999876411 479999999889
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 012718 436 TKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~ 455 (458)
+++|+++++++|+++++++.
T Consensus 407 t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 407 TETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp CHHHHHHHHHHHHHHHHTGG
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 187
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.95 E-value=1.4e-26 Score=229.22 Aligned_cols=347 Identities=14% Similarity=0.127 Sum_probs=235.8
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHH-HHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELAR-KKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.|.. +..+.++.+.+++.+.+.+.. .++. ..+..+.......+++. +.+++++|++. ..++++||++|+..
T Consensus 47 ~i~l~~-~~~~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~~ 122 (447)
T 3h7f_A 47 TLEMIA-SENFVPRAVLQAQGSVLTNKYAEGLPG-RRYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANAA 122 (447)
T ss_dssp SEECCT-TCCCCCHHHHHHHTSGGGGCCCCEETT-EESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHH
T ss_pred ceeEec-CCCCCCHHHHHHHHHHhcCCccccCCc-ccccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHHH
Confidence 455643 445569999999988764321 1111 11222333344445555 99999999873 33448889999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccch-HHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAI-VPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~-~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
++.++ +++||+|++++++|++.. ..........+..++.++++ +++.+|++++++.+.. ++++|+++.++|++
T Consensus 123 a~~~~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~ 198 (447)
T 3h7f_A 123 VLHAL----MSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPR 198 (447)
T ss_dssp HHHHH----CCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCS
T ss_pred HHHHh----cCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCC
Confidence 99988 789999999999987632 11110111235677777776 4577899999999854 78899998888988
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcc----cCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCcccc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g 296 (458)
+. ++++|.++|+++|+++|+|++|..|.. ..+.. .+.|++++|+||.++ |.| |+++.++++++.+......
T Consensus 199 ~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~ 274 (447)
T 3h7f_A 199 VL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP 274 (447)
T ss_dssp CC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT
T ss_pred cc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC
Confidence 76 999999999999999999999875432 11111 247999999999654 665 9999998776655432211
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCC
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PNIRIYGPK 372 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~~~~~~~~ 372 (458)
+..++++...+.++.+++......++++..+++.++++++.+.|.+. +++++....
T Consensus 275 --------------------~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~ 334 (447)
T 3h7f_A 275 --------------------GQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG 334 (447)
T ss_dssp --------------------TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS
T ss_pred --------------------cccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC
Confidence 12356676667777777766544346788899999999999999876 578876532
Q ss_pred CCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHA 446 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~ 446 (458)
.. ..++++.+. +.+...+.+.|.++ ||.++......... ....++++|+++... .+++|++++++.
T Consensus 335 ~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-GI~v~~~~i~~~~~--~p~~~~~lRig~~~~~~~~~~~eei~~~~~~ 406 (447)
T 3h7f_A 335 TD-----VHLVLVDLRDSPLDGQAAEDLLHEV-GITVNRNAVPNDPR--PPMVTSGLRIGTPALATRGFGDTEFTEVADI 406 (447)
T ss_dssp CS-----SSEEEEECTTSSCCHHHHHHHHHHT-TEECBC---------------CEEEEECHHHHHHTCCHHHHHHHHHH
T ss_pred CC-----CCEEEEEcCCCCCCHHHHHHHHHHC-CeEEecccCCCCCC--CCCCCCceeccCHHHhhCCCCHHHHHHHHHH
Confidence 11 557777775 34566777777777 99987321110000 001257899987643 578999999999
Q ss_pred HHHHHHhh
Q 012718 447 LNETVSFF 454 (458)
Q Consensus 447 l~~~~~~~ 454 (458)
|.+++++.
T Consensus 407 l~~~l~~~ 414 (447)
T 3h7f_A 407 IATALATG 414 (447)
T ss_dssp HHHHHHSG
T ss_pred HHHHHhcc
Confidence 99998754
No 188
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=3.7e-26 Score=226.55 Aligned_cols=346 Identities=11% Similarity=0.065 Sum_probs=230.4
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|.. ..+..++.+.+++.+.+.... .+.. .....+...++++.++++++.+.+ +|+||+|+++
T Consensus 49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~----~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggse 121 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPG----FQYGHPLSFQLAEKITDLTPGNLN-HVFFTDSGSE 121 (449)
T ss_dssp CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCS----SSCCCHHHHHHHHHHHTTSSTTEE-EEEEESSHHH
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Cccc----cccCCHHHHHHHHHHHHhCCCCCC-EEEEcCcHHH
Confidence 34567763 344558999999998876532 1110 001234456788999999976654 8999999999
Q ss_pred HHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHH----HcC-----CeEEEEeCCCCC-----CCC-----
Q 012718 141 AINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQ----KTG-----ANLKFLNLNDDE-----SPD----- 197 (458)
Q Consensus 141 a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~----~~g-----~~~~~v~~~~~~-----~~d----- 197 (458)
|++.++.++.... -.++++|++.+++|++.......... +.+ ..+..++.+... .+|
T Consensus 122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~ 201 (449)
T 3a8u_X 122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG 201 (449)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence 9999998762100 01678999999999987543332210 001 134555543211 135
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
+++|++.++ +++++|+++..+|+||.+.| +++|.++|++||+++|+|++|. +|... .+.....+
T Consensus 202 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~ 281 (449)
T 3a8u_X 202 IALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTP 281 (449)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCC
Confidence 899999887 46788888888888999888 9999999999999999999994 65321 11112347
Q ss_pred cEEEecccCCCCCC--ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
|++ |++|.+++. .+|++++++++++.+.....+. ..... ......+.+....+++.++++.+.+
T Consensus 282 di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~-----------~~~~~-~~~~t~~~~~~~~aa~~aal~~~~~ 347 (449)
T 3a8u_X 282 DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPE-----------YAVEF-PHGYTYSAHPVACAAGLAALCLLQK 347 (449)
T ss_dssp SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCT-----------TSCSS-CCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CEE--EEcccccCCCCceEEEEECHHHHHHhhccCccc-----------ccccc-cccCCCcccHHHHHHHHHHHHHHHh
Confidence 866 677977652 2899999988766554311000 00000 0001224566677777788887765
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------hHHHHHHHhhhcCeEeccCCCC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------PTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
. .+.++++++.+++.+.|+++..+.+.... ...+.++++.+++.. ..++.+.|.++ ||.++++
T Consensus 348 ~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~----~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--- 416 (449)
T 3a8u_X 348 E---NLVQSVAEVAPHFEKALHGIKGAKNVIDI----RNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG--- 416 (449)
T ss_dssp T---THHHHHHHHHHHHHHHHHTTTTSTTEEEE----EEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE---
T ss_pred c---CHHHHHHHHHHHHHHHHHHHhcCCCeEEE----eeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC---
Confidence 3 46778888888898888764222111110 123678999887431 22688999888 9999864
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++||+++..++++|+++++++|+++++++
T Consensus 417 ----------g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 417 ----------GDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----------CCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 2689999988899999999999999998764
No 189
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.95 E-value=6e-28 Score=235.45 Aligned_cols=323 Identities=13% Similarity=0.067 Sum_probs=222.4
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC------CCCCcEE
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA------SDSGEIV 133 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~~v~ 133 (458)
++++.|..+. ..++++.+.+++.+.+... ..+. + .......++|++++++++. ++ ++|+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~--y----~~~~g~~~lr~~la~~~~~~~~~~~~~-~~v~ 96 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE--TTKN--Y----LGIDGIPEFGRCTQELLFGKGSALIND-KRAR 96 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC--CCCC--C----CCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEE
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcc--cccC--C----CCCCCCHHHHHHHHHHHhcCCCCcccc-ccEE
Confidence 4456666654 2356789999998876542 1110 1 1123345788999998832 23 3888
Q ss_pred E--eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcC--
Q 012718 134 F--TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR-- 207 (458)
Q Consensus 134 ~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~-- 207 (458)
+ |+|+++|+++++.++. .+++||+|+++.|+|++ +...++..|++++.++.+ +++.+|++++++.+++
T Consensus 97 ~~~~~g~~~a~~~~~~~~~--~~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 170 (396)
T 2q7w_A 97 TAQTPGGTGALRVAADFLA--KNTSVKRVWVSNPSWPN----HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ 170 (396)
T ss_dssp EEEESHHHHHHHHHHHHHH--HHSCCCEEEEEESCCTH----HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC
T ss_pred EEecccchhhHHHHHHHHH--HhCCCCEEEEcCCCchh----HHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC
Confidence 8 9999999999987652 13589999999999995 455667789999999985 4577899999999875
Q ss_pred -CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-------cCC-CCC-CCCcEEEecccCCCCC
Q 012718 208 -KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VVD-VQG-LDADFLVASSHKMCGP 274 (458)
Q Consensus 208 -~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-------~~~-~~~-~~~d~~~~s~~K~~gp 274 (458)
+++++++++++||||.++| +++|+++|+++|+++|+|++|+.... ++. +.. .+.++++.|+||.+|+
T Consensus 171 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 250 (396)
T 2q7w_A 171 AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGL 250 (396)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccc
Confidence 4688899999999999998 56899999999999999999884321 111 211 1356889999999998
Q ss_pred Cc--eeEEEE---ecc----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-----HHh
Q 012718 275 TG--IGFLFG---KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-----STI 340 (458)
Q Consensus 275 ~g--~G~l~~---~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-----~~~ 340 (458)
+| +|++++ +++ +++.+.... +...++++.....++..+++.. ...
T Consensus 251 ~G~riG~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~ 309 (396)
T 2q7w_A 251 YNERVGACTLVAADSETVDRAFSQMKAAI---------------------RANYSNPPAHGASVVATILSNDALRAIWEQ 309 (396)
T ss_dssp GGGCCEEEEEECSSHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cccccceEEEEcCCHHHHHHHHHHHHHHH---------------------hhccCCCCcHHHHHHHHHhcChhhHHHHHH
Confidence 88 799997 443 322221100 0112344665566665655432 012
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 341 GMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
.++++.++++++++++.+.|+++. ++++..+. .+.++++.++ ...+.+.+.++ ||.+.+
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~l~~~-gv~v~~-------- 371 (396)
T 2q7w_A 310 ELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQ------NGMFSFSGLT---KEQVLRLREEF-GVYAVA-------- 371 (396)
T ss_dssp HHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHC------CSSEEECCCC---HHHHHHHHHHH-CEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCC------CceEEEecCC---HHHHHHHHHhc-CeeecC--------
Confidence 367778888999999999998873 25443332 1345555443 45566666667 999864
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+|++++. .+++|+++++++|++++
T Consensus 372 --------~~Ris~~~-~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 372 --------SGRVNVAG-MTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp --------TCEEEGGG-CCTTTHHHHHHHHHHHC
T ss_pred --------CceEEEee-cCHHHHHHHHHHHHhcC
Confidence 26999985 48899999999998763
No 190
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.95 E-value=1.9e-26 Score=237.60 Aligned_cols=309 Identities=15% Similarity=0.132 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
...++++.+|+++|++. .+++++|+|+++..++.++ +++||+|+++.++|.+...+ +++..|++++.++..
T Consensus 174 ~i~e~e~~lA~~~gae~--~i~v~nGtt~an~~ai~al----~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK--TYFVLGGSSNANNTVTSAL----VSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTN 244 (730)
T ss_dssp HHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHh----cCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCC
Confidence 56789999999999973 6778888889999999998 78999999999999987643 145569999988765
Q ss_pred CC-----CCCCHHHH-----HHhhcCC------c----eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCc
Q 012718 192 DD-----ESPDLDKL-----KEMLSRK------T----KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH 251 (458)
Q Consensus 192 ~~-----~~~d~~~l-----~~~l~~~------~----~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~ 251 (458)
.+ +.+|++++ +++++++ + ++++++++ |++|.+.|+++|+++|+++|+++++|++|+.+.
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 32 34688888 8888765 5 88999988 689999999999999999999999999997421
Q ss_pred ---------ccCCCCCCCCc----EEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc
Q 012718 252 ---------MVVDVQGLDAD----FLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 252 ---------~~~~~~~~~~d----~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
.+++...++.| +++.|+||+ .|+.++|+++++++.+..-+.... . ..+......+
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~-~----------~~~~~~~~~~ 392 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCD-H----------KHFNNSFNLF 392 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCC-H----------HHHHHHHHHH
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccC-H----------HHHHHHHHHh
Confidence 12334345677 999999995 456778999998875422110000 0 0000000234
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCC----------------------
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPS---------------------- 374 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~---------------------- 374 (458)
..+++++..++++.++++++...+.....++..++++++++.|.+ ++++++..+...
T Consensus 393 ~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (730)
T 1c4k_A 393 MSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF 472 (730)
T ss_dssp SCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBC
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhcc
Confidence 568899999999999998876622345567888999999999988 789998765310
Q ss_pred ---C-----cCc-cc-----c-EEEEEeC------------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 375 ---E-----HVQ-RA-----A-LCSFNVE------------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 375 ---~-----~~~-~~-----~-~v~~~~~------------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
. ... .+ + .+.|..+ +.+..++.+.|.++ ||.+.... ...+
T Consensus 473 ~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~-GI~v~~~~------------~~~i 539 (730)
T 1c4k_A 473 EKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKSD------------LNSI 539 (730)
T ss_dssp CTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEEC------------SSEE
T ss_pred CccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHC-CcEEEECC------------CCeE
Confidence 0 000 01 1 1667764 35678899999988 99885422 5689
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|++++.++|.+|+++++++|.++.++.
T Consensus 540 r~~~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 540 LFLMTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988755
No 191
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.95 E-value=1.2e-26 Score=229.63 Aligned_cols=325 Identities=14% Similarity=0.088 Sum_probs=218.9
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCC----CCcEEE--eCChhHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASD----SGEIVF--TKNATEA 141 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~----~~~v~~--t~g~t~a 141 (458)
+|+|..+..++.+.+.+++.+............. ......++|+++++++ |.+. +++|++ |+|+|+|
T Consensus 58 ~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~------~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~a 131 (448)
T 3meb_A 58 AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYP------PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGS 131 (448)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCC------CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHH
T ss_pred cccCCCCCEechHHHHHHHHHHhhcccCCCCCCC------CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHH
Confidence 3455555566778888876665421101111111 1223457889999988 7762 248999 9999999
Q ss_pred HHHHH--HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH----HcCCeEEEEeC-CCC--CCCCHHHHHHhhcC---Cc
Q 012718 142 INLVA--YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ----KTGANLKFLNL-NDD--ESPDLDKLKEMLSR---KT 209 (458)
Q Consensus 142 ~~~~~--~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~----~~g~~~~~v~~-~~~--~~~d~~~l~~~l~~---~~ 209 (458)
+++++ .++ +.+||+|++++|+|.+. ...++ ..|++++.++. +++ +.+|++.+++.+++ ++
T Consensus 132 l~l~~~~~~~----~~~gd~Vlv~~p~~~~~----~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~ 203 (448)
T 3meb_A 132 LHIGFEFLHL----WMPKAEFYMPSTTWPNH----YGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKS 203 (448)
T ss_dssp HHHHHHHHHH----HCTTCCEEEESSCCTHH----HHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHH----hCCCCEEEECCCCCHhH----HHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCc
Confidence 98844 333 57899999999999954 44555 77999999998 554 78899999999874 57
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-c-------CC-C-CCCCCcEEEecccCCCCCCc
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-V-------VD-V-QGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-~-------~~-~-~~~~~d~~~~s~~K~~gp~g 276 (458)
+++++++++||||.+++ +++|+++|+++|+++|+|++|..... + +. + ......+++.|+||.+|++|
T Consensus 204 ~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 283 (448)
T 3meb_A 204 IFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYG 283 (448)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcc
Confidence 88999999999999999 55699999999999999999873221 1 00 1 12234577899999999888
Q ss_pred --eeEE--EE--------e-c----cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-
Q 012718 277 --IGFL--FG--------K-S----DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS- 338 (458)
Q Consensus 277 --~G~l--~~--------~-~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~- 338 (458)
+|++ ++ + + ++++.+.... +...++++.....++..++....
T Consensus 284 ~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~l 342 (448)
T 3meb_A 284 ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI---------------------RKTWSMSAIHGAYIVQVIVHDKRL 342 (448)
T ss_dssp GCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHTSHHH
T ss_pred ccceeeeeeeccccccccCCHHHHHHHHHHHHHHH---------------------hcccCCccHHHHHHHHHHhcChHH
Confidence 8998 65 3 3 3333332111 11123455555555555543211
Q ss_pred --H--hCHHHHHHHHHHHHHHHHHHHhcC--CC------EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeE
Q 012718 339 --T--IGMQKIHAYEMELAKYLYENLLSI--PN------IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVA 406 (458)
Q Consensus 339 --~--~g~~~~~~~~~~l~~~l~~~L~~~--~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~ 406 (458)
+ ..+++.+++++++++++.+.|+++ ++ +++..+. .+.+++..+ +. +++..+.+++||.
T Consensus 343 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~---~~-~~~~~ll~~~gV~ 412 (448)
T 3meb_A 343 LQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA------IGMFTFTGL---TP-EHVDYLKEKWSIY 412 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC------CSSEEECCC---CH-HHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC------ceEEEecCC---CH-HHHHHHHHhCCEE
Confidence 1 126788899999999999999876 34 3332222 133444433 33 5555554334999
Q ss_pred eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 407 TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 407 ~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+.+|+ .|||++. .+.++|++++++|.++++++
T Consensus 413 v~~G~---------------gRis~a~-~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 413 LVKAG---------------GRMSMCG-LTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp ECSGG---------------GEEEGGG-CCTTTHHHHHHHHHHHHHHS
T ss_pred EeCCC---------------cEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 98764 2999975 36677999999999999854
No 192
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.95 E-value=4.8e-26 Score=224.65 Aligned_cols=338 Identities=10% Similarity=0.026 Sum_probs=226.7
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .+..++.+.+++.+.+..... ... ++ ..+...++++.++++++.+.+ +|++|+|+++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~-----~~-~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~e 113 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFS-----EM-LSRPVVDLATRLANITPPGLD-RALLLSTGAE 113 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCT-----TC-CCHHHHHHHHHHHHHSCTTCC-EEEEESCHHH
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-ccc-----cc-CCHHHHHHHHHHHHhCCCCcC-EEEEeCchHH
Confidence 345666532 234588999999998876421 111 11 124456788899999987654 9999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----Hc---CCeEEEEeCCCC----C--------CCCHHH
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KT---GANLKFLNLNDD----E--------SPDLDK 200 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~---g~~~~~v~~~~~----~--------~~d~~~ 200 (458)
|+..++..+. ...++++|++.++.|++.......... .. ...+..++.+.. + .+|+++
T Consensus 114 a~~~a~~~~~--~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 191 (433)
T 1zod_A 114 SNEAAIRMAK--LVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY 191 (433)
T ss_dssp HHHHHHHHHH--HHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred HHHHHHHHHH--HhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence 9999998641 113467999999999976543332210 00 113445544321 1 135899
Q ss_pred HHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEec
Q 012718 201 LKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVAS 267 (458)
Q Consensus 201 l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s 267 (458)
|++.++ +++++|+++.++|+||...+ +++|.++|++||+++|+|++|+ ++... . +.....+|++ |
T Consensus 192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s 269 (433)
T 1zod_A 192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--T 269 (433)
T ss_dssp HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--E
T ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--E
Confidence 999887 46788888888899998776 9999999999999999999998 54221 1 1112346765 6
Q ss_pred ccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 268 SHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 268 ~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
++|.+|+ -++|++++++++++.+...... .....+.+.....++.++++.+.+. .+.
T Consensus 270 ~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~-------------------~~~t~~~~~~~~~a~~aal~~~~~~---~~~ 327 (433)
T 1zod_A 270 LSKTLGAGLPLAAIVTSAAIEERAHELGYL-------------------FYTTHVSDPLPAAVGLRVLDVVQRD---GLV 327 (433)
T ss_dssp ECHHHHTTSSCEEEEECHHHHHHHHHTTCC-------------------CCCTTTTCHHHHHHHHHHHHHHHHT---THH
T ss_pred ecccccCCCCeeEEEEhHHHHHhhccCCCC-------------------CCCCCCcCHHHHHHHHHHHHHHHhC---CHH
Confidence 7896654 3389999998876655421000 0011234666777777888877663 345
Q ss_pred HHHHHHHHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCC---------CChHHHHHHHhhhcCeEeccCCCC
Q 012718 347 AYEMELAKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVEN---------IHPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
++++++.+++.+.|++ .+.+....+ .+.++++.+++ ....++.+.|.++ ||.+.++..+
T Consensus 328 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~ 399 (433)
T 1zod_A 328 ARANVMGDRLRRGLLDLMERFDCIGDVRG-------RGLLLGVEIVKDRRTKEPADGLGAKITRECMNL-GLSMNIVQLP 399 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEE-------ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHT-TEECCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEE-------EEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CCeEeccCCC
Confidence 6666777777777654 344433222 26678887752 2256788888887 9999887522
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+.++++||+++...+++|+++++++|+++++++
T Consensus 400 --------~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 400 --------GMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp --------TSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 224799999998899999999999999998764
No 193
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=7.4e-27 Score=232.84 Aligned_cols=340 Identities=16% Similarity=0.116 Sum_probs=221.1
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
+..|+|..+.... +.+.+++.+.+... . ..+ .......+++++++++++.+ ++++|+|||+|+.+++
T Consensus 42 g~~ylD~~~~~~~-~~v~~a~~~~~~~~---~--~~y----~~~~~~~~l~~~la~~~~~~---~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 42 SAVYIDLLTDSGT-NAMSDHQWAAMITG---D--EAY----AGSRNYYDLKDKAKELFNYD---YIIPAHQGRGAENILF 108 (467)
T ss_dssp GGCSEECSCSSSC-CCEEHHHHHHHHTC---C--CCS----SSCHHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHH
T ss_pred CceeeecccCcCC-HHHHHHHHHHHhhc---c--ccc----ccCccHHHHHHHHHHHcCCC---cEEEcCCcHHHHHHHH
Confidence 3457777554433 55556665554321 0 001 11234567899999999874 8999999999999999
Q ss_pred HHcCCCCCC----CCCE---EEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----------CCCCCHHHHHHhhcC--
Q 012718 147 YSWGLSNLK----SGDE---VILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSR-- 207 (458)
Q Consensus 147 ~~l~~~~~~----~g~~---vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----------~~~~d~~~l~~~l~~-- 207 (458)
.++ .+ +||. |+++ ..|+. .+.......|++++.++... ++.+|+++|++++++
T Consensus 109 ~~~----~~~~~~~Gd~~~~viv~-~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~ 180 (467)
T 1ax4_A 109 PVL----LKYKQKEGKAKNPVFIS-NFHFD---TTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG 180 (467)
T ss_dssp HHH----HHHHHHTTCCSSCEEEE-SSCCH---HHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred HHH----HHhhccCCCccceEEEe-ccccc---hhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC
Confidence 987 56 8998 8888 44432 22444456688888765421 356899999999974
Q ss_pred --CceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccC-----------CcccCCCCC------CCCcEE
Q 012718 208 --KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQG------LDADFL 264 (458)
Q Consensus 208 --~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~-----------g~~~~~~~~------~~~d~~ 264 (458)
++++|++++++||+ |.+++ +++|+++|++||+++|+|+++.. +....++.. ..+|++
T Consensus 181 ~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 260 (467)
T 1ax4_A 181 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADAL 260 (467)
T ss_dssp GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEE
T ss_pred CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceE
Confidence 68999999999999 78877 67899999999999999998765 222222111 136889
Q ss_pred EecccCCCCCCceeEEEEe-c-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 265 VASSHKMCGPTGIGFLFGK-S-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 265 ~~s~~K~~gp~g~G~l~~~-~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
++|+||.+|++-.|+++.+ + ++++.+......++ ...+.++.+...+.++..+++...+
T Consensus 261 ~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~a~~~~l~~~~~--- 321 (467)
T 1ax4_A 261 TMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPME----------------GFVTYGGLAGRDMAAMVQGLEEGTE--- 321 (467)
T ss_dssp EEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHT----------------CSTTTTTCCHHHHHHHHHHHHHTTC---
T ss_pred EEeccccCCCCcceEEEeCCHHHHHHHHHhhccccc----------------cccccCCccchHHHHHHHHHHHhhh---
Confidence 9999998886523777777 5 66554432211000 0011234454444444444443221
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE-------eC--CCChHHHHHHH-hhhcCeEecc-CC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN-------VE--NIHPTDIATLL-DQQYGVATRS-GH 411 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~--~~~~~~~~~~l-~~~~gi~~~~-g~ 411 (458)
+...++..++.+++.+.|.+ +++++..+. .+.++++. ++ +.+..++.+.| .++ ||.+.+ |.
T Consensus 322 ~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-gv~v~~~g~ 393 (467)
T 1ax4_A 322 EEYLHYRIGQVKYLGDRLRE-AGIPIQYPT------GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLES-GVRAVEIGS 393 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCBCSSC------CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHH-CEECEEESH
T ss_pred hhHHHHHHHHHHHHHHHHHh-CCCCcccCC------CceEEEEehhhhccccccCCCCHHHHHHHHHHhc-CceeeecCc
Confidence 12223334667888888877 477665433 25678888 43 23457788888 777 999988 54
Q ss_pred CCChhhHhhcC-----CCCeEEEeeCC-CCCHHHHHHHHHHHHHHHHhhh
Q 012718 412 HCAQPLHRYLG-----VNASARASLHF-YNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 412 ~~~~~~~~~~g-----~~~~lRis~~~-~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++.... ...| ..+++|++++. .+|.+|++++++.|++++++.+
T Consensus 394 ~~~~~~-~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 394 FLLGRD-PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp HHHCBC-TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccccc-cccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 321000 0001 13799999984 4899999999999999887654
No 194
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.95 E-value=6.6e-26 Score=225.22 Aligned_cols=336 Identities=16% Similarity=0.150 Sum_probs=225.2
Q ss_pred CCeEEecCCCC---CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAAT---SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
.+..|+|..+. .++++.+.+++... . ..+ .......+++++++++++.+ ++++|+||++|+
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~------~---~~y----~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~ 103 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMMG------D---EAY----AGSENFYHLERTVQELFGFK---HIVPTHQGRGAE 103 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTTC------C---CCS----SSCHHHHHHHHHHHHHHCCS---EEEEESSHHHHH
T ss_pred cccceeeeccccCCccCCHHHHHHhhcc------h---hhc----ccChhHHHHHHHHHHHhCCC---cEEEeCCcHHHH
Confidence 34456776433 25667777766511 1 011 11345668999999999875 899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----------CCCCCHHHHHHhhcCCc---
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSRKT--- 209 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----------~~~~d~~~l~~~l~~~~--- 209 (458)
..++.++ +++|| +++.++|++. +...+...|++++.+++++ ++.+|+++|++++++++
T Consensus 104 ~~al~~l----~~~gd--i~~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~ 174 (456)
T 2ez2_A 104 NLLSQLA----IKPGQ--YVAGNMYFTT---TRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAEN 174 (456)
T ss_dssp HHHHHHH----CCTTC--EEEESSCCHH---HHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred HHHHHHh----CCCCC--Eeccccccch---hHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccc
Confidence 9999988 67898 7888899433 2344566799999998863 25789999999997655
Q ss_pred -eEEEEecccC-cCccccc---HHHHHHHHHhcCcEEEEeccccCC---------cccCCCC--------CCCCcEEEec
Q 012718 210 -KLVVIHHISN-MLASILP---IEEIVHWSHDVGAKVLVDACQSVP---------HMVVDVQ--------GLDADFLVAS 267 (458)
Q Consensus 210 -~~v~~~~~~n-~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g---------~~~~~~~--------~~~~d~~~~s 267 (458)
++|++++++| |||.+.| +++|+++|++||+++|+|++|+.| ....+.. ....|+++.|
T Consensus 175 ~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S 254 (456)
T 2ez2_A 175 IAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMS 254 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEE
T ss_pred eeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEe
Confidence 8999999998 9999998 999999999999999999999875 1111111 1236888889
Q ss_pred ccCCCCCCceeEEEE-eccccccCCCcccc-CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 268 SHKMCGPTGIGFLFG-KSDLLSAMPPFLGG-GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 268 ~~K~~gp~g~G~l~~-~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
++|+++++.+|+++. ++++++.+...... ++. .+.+..+...+.++ ++..+.... +.+
T Consensus 255 ~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~a~--a~~~~~~~~-~~~ 314 (456)
T 2ez2_A 255 GKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGM-----------------PSYGGLAGRDMEAM--AIGLREAMQ-YEY 314 (456)
T ss_dssp TTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC-----------------TTTTTCCHHHHHHH--HHHHHHHTC-HHH
T ss_pred CcccCCCCceeEEEECCHHHHHHHHHHHhhccCc-----------------ccccCcchhHHHHH--HHHHHHHhH-HHH
Confidence 889876333799988 45666554432110 000 00112233233221 233333322 456
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe----CCCChHHH-----HHHH-hhhcCeEecc-CCCCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV----ENIHPTDI-----ATLL-DQQYGVATRS-GHHCA 414 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~-----~~~l-~~~~gi~~~~-g~~~~ 414 (458)
.++..++.+++.+.|++. ++++..+. .+.++++.+ ++.+..++ .+.| .++ ||.+.+ |.+|.
T Consensus 315 ~~~~~~~~~~l~~~L~~~-g~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-gv~~~~~g~~~~ 386 (456)
T 2ez2_A 315 IEHRVKQVRYLGDKLKAA-GVPIVEPV------GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVET-GVRSMERGIISA 386 (456)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCBCSSC------CSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHH-SEECEEESHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCccccCC------CceEEEEEhHHhcCCCChhhccHHHHHHHHHHhc-Ceeeeccccccc
Confidence 677778889999999875 77655443 156777776 34445555 6666 566 998654 44331
Q ss_pred hhhHhh-----cCCCCeEEEeeCCC-CCHHHHHHHHHHHHHHHHhhh
Q 012718 415 QPLHRY-----LGVNASARASLHFY-NTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 415 ~~~~~~-----~g~~~~lRis~~~~-~t~~di~~l~~~l~~~~~~~~ 455 (458)
. .... ....+++|++++.+ ++++|+++++++|++++++..
T Consensus 387 ~-~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 387 G-RNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp C-BCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred c-cCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 1 0000 11247899999976 899999999999999988654
No 195
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.94 E-value=8.3e-26 Score=222.75 Aligned_cols=348 Identities=13% Similarity=0.049 Sum_probs=217.3
Q ss_pred eEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
.-|+|..+ .|..++.+.+++.+.+......... ....+..+++++.++++++.+.+ +|+||+|+++|
T Consensus 29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~ea 101 (430)
T 3i4j_A 29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGS------QFSSDVLEEYAGRLARFVGLPTF-RFWAVSGGSEA 101 (430)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT------TCEEHHHHHHHHHHHHHTTCTTC-EEEEESSHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhccccccc------ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCcHHHH
Confidence 34566543 3345899999999988764211100 11234556788899999987765 99999999999
Q ss_pred HHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHcC---------C--eEEEEeCCCC---CCCCHHHHHH
Q 012718 142 INLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTG---------A--NLKFLNLNDD---ESPDLDKLKE 203 (458)
Q Consensus 142 ~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g---------~--~~~~v~~~~~---~~~d~~~l~~ 203 (458)
+..++.++... .-.+++.|++.++.|++.......+..... . .+..++.+.. +..|+++|++
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 181 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA 181 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence 99999876210 004578999999999975433222211100 0 3334443322 2236688888
Q ss_pred hhc----CCceEEEEecccC-cCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCC-CCCCcEEEecc
Q 012718 204 MLS----RKTKLVVIHHISN-MLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQ-GLDADFLVASS 268 (458)
Q Consensus 204 ~l~----~~~~~v~~~~~~n-~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~-~~~~d~~~~s~ 268 (458)
.++ +++++|+++.+++ ++|...+ +++|.++|++||+++|+|++|. ++.. .. +.. ...+|+++ +
T Consensus 182 ~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~ 259 (430)
T 3i4j_A 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--L 259 (430)
T ss_dssp HHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--E
T ss_pred HHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--E
Confidence 886 4668888888888 9999887 9999999999999999999997 4322 11 111 33467665 6
Q ss_pred cCCCCC--CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHH
Q 012718 269 HKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKI 345 (458)
Q Consensus 269 ~K~~gp--~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~ 345 (458)
+|.+++ -.+|++++++++++.+....... ......+.+...+.+..++++.+.+.. .+++
T Consensus 260 sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~-----------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 322 (430)
T 3i4j_A 260 GKGLAAGYAPLAGLLAAPQVYETVMGGSGAF-----------------MHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA 322 (430)
T ss_dssp CGGGTTTSSCCEEEEECHHHHHHHHHTTCBC-----------------CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cccccCCccccEEEEECHHHHHHHhccCCcc-----------------cccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 797765 22799999988776654310000 000122456666677777777765533 3444
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC----------ChHHHHHHHhhhcCeEeccCCCCCh
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI----------HPTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
++....+.+.|.+.+.+++++....+. +.++++.+.+. ...++.+.+.++ ||.++++.++..
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~ 394 (430)
T 3i4j_A 323 KERGAQLLAGLQALQARFPQMMQVRGT-------GLLLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGAEP 394 (430)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEE-------TTEEEEEEC------------CHHHHHHHHHHT-TEECC-------
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEE-------EEEEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccccC
Confidence 455555555555555556666654332 67888877532 125788889888 999988642211
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.. ..+++||+++...+++|+++++++|+++++++
T Consensus 395 ~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 395 NG-----RGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ---------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11 15689999998899999999999999998865
No 196
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.94 E-value=5.6e-26 Score=224.84 Aligned_cols=337 Identities=10% Similarity=0.051 Sum_probs=226.9
Q ss_pred CeEEecCC------CCCCCcHHHH-H-HHHH---HHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEe
Q 012718 67 KLVYLDNA------ATSQKPIAVL-K-ALQN---YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT 135 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t 135 (458)
+..|+|.. ..|..++.+. + ++.+ .+... .+.+. . ...+...++.+.++++++....++|+|+
T Consensus 53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~---~~~~~---~-~~~~~~~~la~~la~~~~~~~~~~v~~~ 125 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALN---KPSNS---D-VYSVAMARFVETFARVLGDPALPHLFFV 125 (449)
T ss_dssp CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTC---CCCTT---T-CCCHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhc---CCCCc---c-cCCHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 44677752 2344688999 8 9999 44432 11110 0 1234456788899999973222499999
Q ss_pred CChhHHHHHHHHHcCCCCC---------C-CCCEEEEcCCCCccchHHHHHHH-----HHcCC-----eEEEEeCCC--C
Q 012718 136 KNATEAINLVAYSWGLSNL---------K-SGDEVILTVAEHHSAIVPWQLVA-----QKTGA-----NLKFLNLND--D 193 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~---------~-~g~~vl~~~~~~~s~~~~~~~~a-----~~~g~-----~~~~v~~~~--~ 193 (458)
+|+++|++.++..+....- + +|++|++.++.||+....+..+. .+.+. .+..+|.++ .
T Consensus 126 ~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 205 (449)
T 2cjg_A 126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGL 205 (449)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTC
T ss_pred CchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchh
Confidence 9999999999875420000 1 28899999999997654322211 11233 556666543 1
Q ss_pred C--------CCCHHHHHHhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C-
Q 012718 194 E--------SPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V- 254 (458)
Q Consensus 194 ~--------~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~- 254 (458)
. ..++++|++.++ +++++|+++.++|++|...+ +++|.++|++||+++|+|++|+ +|... .
T Consensus 206 ~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~ 285 (449)
T 2cjg_A 206 DEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWA 285 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSST
T ss_pred hccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCccee
Confidence 1 135566888885 57899999999999998776 9999999999999999999998 43221 1
Q ss_pred -CCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHH
Q 012718 255 -DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 255 -~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 333 (458)
+.....+|++ +++|.+ | +|++++++++++.+.+...+... .....+.+.....++.++
T Consensus 286 ~~~~~~~~di~--t~sK~l-~--iG~~~~~~~~~~~l~~~~~~~~~----------------~~~t~~~n~~~~~aa~aa 344 (449)
T 2cjg_A 286 YQQLDVAPDIV--AFGKKT-Q--VCGVMAGRRVDEVADNVFAVPSR----------------LNSTWGGNLTDMVRARRI 344 (449)
T ss_dssp HHHHTCCCSEE--EECGGG-S--SEEEEECGGGGGSTTCTTTSTTS----------------SCCSSSSCHHHHHHHHHH
T ss_pred ecccCCCceEE--EecCcc-c--EEEEEECHHHhhhhhhcccCCcc----------------cccCCCCCHHHHHHHHHH
Confidence 1112357876 467966 3 89999999888765542110000 001224566677777788
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCC-EEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEe
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLS----IPN-IRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVAT 407 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~----~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~ 407 (458)
++.+.+ +.+.++++++.+++.+.|++ .+. +....+ .+.++++.+++. ...++.+.|.++ ||.+
T Consensus 345 l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~l~~~-Gv~v 413 (449)
T 2cjg_A 345 LEVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDPRG-------RGLMCAFSLPTTADRDELIRQLWQR-AVIV 413 (449)
T ss_dssp HHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE-------ETTEEEEECSSHHHHHHHHHHHHHT-TEEC
T ss_pred HHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEee-------ccEEEEEEECChHHHHHHHHHHHHC-CeEE
Confidence 887765 34567777888888888765 343 433222 267888888642 356788888887 9999
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.++. .+++|+++++.++++|+++++++|+++++++
T Consensus 414 ~~~g------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 414 LPAG------------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEET------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCC------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8753 5799999998899999999999999998754
No 197
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.94 E-value=5.7e-26 Score=220.62 Aligned_cols=298 Identities=19% Similarity=0.192 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-HHHcCCeEEEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFL 188 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-a~~~g~~~~~v 188 (458)
.+..+++++.++++.|.+ .+++++||++|+..+ ..+ +++||+|+++++.|++....+... .+..|++++.+
T Consensus 66 ~p~~~~l~~~la~l~g~~---~~~~~~sG~~Ai~~~-~~l----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 137 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGT---RAFAFASGMAATSTV-MEL----LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV 137 (400)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH-HTT----SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEE
T ss_pred CHHHHHHHHHHHHHhCCC---CEEEecCHHHHHHHH-HHH----cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEE
Confidence 345667889999999976 677788889999984 444 689999999999999877666666 67779999999
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
+.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+... ....+++|+++.|+
T Consensus 138 ~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~-~~~~~g~div~~S~ 211 (400)
T 3nmy_A 138 DLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ-RPLSLGADLVVHSA 211 (400)
T ss_dssp CTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC-CGGGGTCSEEEEET
T ss_pred CCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCcEEEecC
Confidence 876 899999999999999999999999999999999999999999999999999855431 11235799999999
Q ss_pred cCCCCCCc---ee-EEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 269 HKMCGPTG---IG-FLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 269 ~K~~gp~g---~G-~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+|+++++| .| +++. ++++++.+....... ..+.+....+. ++..+.. +.
T Consensus 212 sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~---------------------g~~~~~~~a~~---~l~~l~~--l~ 265 (400)
T 3nmy_A 212 TKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI---------------------GGVQGPFDSFL---ALRGLKT--LP 265 (400)
T ss_dssp TTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH---------------------CCBCCHHHHHH---HHHHHTT--HH
T ss_pred ccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc---------------------CCCCCHHHHHH---HHHhHhH--HH
Confidence 99776543 45 3444 444544443221111 12233322222 2233322 44
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccC
Q 012718 344 KIHAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVENI--HPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g 410 (458)
...++..++++++.+.|++.|.+... .|.-... ...+++++|.+++. ....+.+.+.-- ++.++.|
T Consensus 266 ~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~-~~~~s~G 344 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELF-TLAESLG 344 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSS-EECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcc-eEecCCC
Confidence 55667788899999999988877643 3321100 23467999999752 123344444322 4445555
Q ss_pred CCCCh--------------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 411 HHCAQ--------------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 411 ~~~~~--------------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
..++- .....+|. ++.+|+|++. ||++.+++.|+++++
T Consensus 345 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 345 GVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI----EDLGDLRGDLERALV 397 (400)
T ss_dssp SSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHC
T ss_pred CCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 43321 01112343 6899999998 455566666666664
No 198
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.94 E-value=1.8e-25 Score=225.32 Aligned_cols=355 Identities=13% Similarity=0.071 Sum_probs=220.8
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-----C--CC--CCCcEEEeCCh
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----N--AS--DSGEIVFTKNA 138 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----g--~~--~~~~v~~t~g~ 138 (458)
.+.|..+..+..++.+.+++.+.... ..++... ....+++++++.+ + .+ +.++|++|+|+
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~~----------g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~ 174 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG-CNYPVPP----------RMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGG 174 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSSS----------SCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc-CCCCCCc----------CCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCH
Confidence 45565566666677777777766532 1222111 1113444444332 2 21 23499999999
Q ss_pred hHHHHHHHHHcC-CCCCCCCCEEEEcCCCCccchHHHHHHHH--HcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEE
Q 012718 139 TEAINLVAYSWG-LSNLKSGDEVILTVAEHHSAIVPWQLVAQ--KTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVV 213 (458)
Q Consensus 139 t~a~~~~~~~l~-~~~~~~g~~vl~~~~~~~s~~~~~~~~a~--~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~ 213 (458)
++++.+++.++. ...+++||+|++++|+|++. ...+. ..|++++.++.+++ +.+|++.+++.++.++++|+
T Consensus 175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~ 250 (546)
T 2zy4_A 175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPY----IEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFF 250 (546)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHH----HHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccH----HHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEE
Confidence 999999998731 00157899999999999954 44333 34788999998754 45899999998888899999
Q ss_pred EecccCcCccccc---HHHHHHHH--HhcCcEEEEeccccCCcc-cCCCCC--CCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 214 IHHISNMLASILP---IEEIVHWS--HDVGAKVLVDACQSVPHM-VVDVQG--LDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 214 ~~~~~n~tG~~~~---l~~i~~l~--~~~~~~vivD~a~~~g~~-~~~~~~--~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
+++++||||.+++ +++|+++| +++|++||+|++|+.... +..+.. .+.++++.|+||.+|.+| +||++++
T Consensus 251 l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 330 (546)
T 2zy4_A 251 CVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAH 330 (546)
T ss_dssp EESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEE
T ss_pred EECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEEC
Confidence 9999999999998 56788888 789999999999984322 111111 246789999999999888 8999998
Q ss_pred cc-ccccCCCcc------------ccCcceEeeecCC-CCC---CCCCCccCCCCCCHHHHHHHH-HH-HHHHHH--hCH
Q 012718 284 SD-LLSAMPPFL------------GGGEMISDVFLDH-STF---ADPPSRFEAGTPAIGEAIGLG-AA-IDYLST--IGM 342 (458)
Q Consensus 284 ~~-~~~~l~~~~------------~g~~~~~~~~~~~-~~~---~~~~~~~~~gt~~~~~~~~l~-~a-l~~~~~--~g~ 342 (458)
++ +++.+.... ..+..... .... ..+ ......+...+.+.....++. .+ ..++.+ .-.
T Consensus 331 ~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~ 409 (546)
T 2zy4_A 331 QQNVFDLALDKLQESEKVALDHRYRSLLPDVR-SLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYK 409 (546)
T ss_dssp SSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGG-GCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHhhcchhhhHHHHHHhhhcccccc-chhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHH
Confidence 86 554431000 00000000 0000 000 000000111233333333321 11 122321 124
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----------------CCh-HHHHHHHhhhcC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----------------IHP-TDIATLLDQQYG 404 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------~~~-~~~~~~l~~~~g 404 (458)
+++++.++++.+.+.+.|. . ++.+..+ ..+.+++++++. .+. ..+.+.+.++ |
T Consensus 410 ~~~r~~~~~r~~~l~~~L~-~-~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~-g 480 (546)
T 2zy4_A 410 HTLKQLIRRRETTLYRELG-M-PPLRDEN------AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADET-G 480 (546)
T ss_dssp HHHHHHHHHHHHHHHGGGT-S-SCCCCTT------BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHhcC-C-CcccCCC------CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHC-C
Confidence 6677778888888888875 3 3322111 224577888752 122 3355566667 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|.+.||..+.. .++++||+++. .+++++++++++|++++++..
T Consensus 481 V~v~pG~~F~~-------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 481 IVLLPGRGFGS-------NRPSGRASLAN-LNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp CCCEESSCTTC-------SSCEEEEESSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCccccCC-------CCCeEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 99999986532 25789999983 589999999999999987654
No 199
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.94 E-value=1.8e-24 Score=214.60 Aligned_cols=337 Identities=9% Similarity=0.038 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC-CC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS-NL 154 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~-~~ 154 (458)
.|..++.+.+++.+.+.+..... .....+...++++.++++++.+. +|+||+||++|+..++..+... ..
T Consensus 63 lG~~~p~v~~A~~~~~~~~~~~~-------~~~~~~~~~~la~~l~~~~~~~~--~v~~~~ggseA~~~al~~~~~~~~~ 133 (452)
T 3n5m_A 63 SGYGRKELAEAAYKQLQTLSYFP-------MSQSHEPAIKLAEKLNEWLGGEY--VIFFSNSGSEANETAFKIARQYYAQ 133 (452)
T ss_dssp TCBCCHHHHHHHHHHHTTCCCCC-------TTSEEHHHHHHHHHHHHHHTSCE--EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcCCcc-------cccCCHHHHHHHHHHHHhCCCCc--eEEEeCchHHHHHHHHHHHHHHHHh
Confidence 34568999999999886532211 01123556678899999998654 3999999999999999887210 00
Q ss_pred C---CCCEEEEcCCCCccchHHHHHHHHH---------cCCeEEEEeCCCCCC---CC---------HHHHHHhhc----
Q 012718 155 K---SGDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDES---PD---------LDKLKEMLS---- 206 (458)
Q Consensus 155 ~---~g~~vl~~~~~~~s~~~~~~~~a~~---------~g~~~~~v~~~~~~~---~d---------~~~l~~~l~---- 206 (458)
+ ++++|++.+++|++.......+... ....+..++...... -| +++|++.++
T Consensus 134 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 213 (452)
T 3n5m_A 134 KGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELS 213 (452)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCG
T ss_pred cCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCC
Confidence 3 7889999999999765433221100 001234454322111 02 889999987
Q ss_pred CCceEEEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC--
Q 012718 207 RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-- 274 (458)
Q Consensus 207 ~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-- 274 (458)
+++++|+++.+ +| +|.+.| +++|.++|++||+++|+|++|. +|.. ..+.....+|+++ ++|.+++
T Consensus 214 ~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~ 290 (452)
T 3n5m_A 214 ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITSAY 290 (452)
T ss_dssp GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTS
T ss_pred CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccCCC
Confidence 56789999998 89 999887 9999999999999999999987 4322 1222233477775 6795543
Q ss_pred CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHH
Q 012718 275 TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELA 353 (458)
Q Consensus 275 ~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~ 353 (458)
-++|++++++++++.+......... ......+.+....++..++++.+.+.+ .+++.+....+.
T Consensus 291 ~~ig~~~~~~~i~~~~~~~~~~~~~---------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 355 (452)
T 3n5m_A 291 LPLSATAVKREIYEAFKGKGEYEFF---------------RHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLL 355 (452)
T ss_dssp SCCEEEEEEHHHHGGGCSSSTTCSC---------------CCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cceEEEEECHHHHHHHhhccCCCCc---------------cccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3489999999888776431000000 000122456666667777787765533 334444444445
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--CC--------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCC
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--IH--------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~ 423 (458)
+.|.+.+.+++.+...... +.++++.+.. .+ ..++.+.+.++ ||.++++..+.. +.
T Consensus 356 ~~L~~~~~~~~~~~~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~------~~ 421 (452)
T 3n5m_A 356 EQLKEEIGEHPLVGDIRGK-------GLLVGIELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMTTA------GY 421 (452)
T ss_dssp HHHHHHHTTCTTEEEEEES-------SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTSST------TC
T ss_pred HHHHHHHhcCCCeEEEEEE-------EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcccC------CC
Confidence 5555544555655543322 5566666531 11 24688888888 999998764422 22
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 424 NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 424 ~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++||+++...+++|+++++++|++++++
T Consensus 422 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 422 NNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 689999999889999999999999998864
No 200
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.94 E-value=1.7e-24 Score=215.00 Aligned_cols=333 Identities=12% Similarity=0.026 Sum_probs=228.0
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC---
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS--- 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~--- 152 (458)
.|..++.+.+++.+.+.+..... ... ....+...++.+.++++++.+.+ +|+||+|+++|+..++.++...
T Consensus 65 lG~~~p~v~~A~~~~~~~~~~~~--~~~---~~~~~~~~~la~~l~~~~~~~~~-~v~~~~gGseA~~~al~~~~~~~~~ 138 (460)
T 3gju_A 65 VGYGRQKIADAIATQAKNLAYYH--AYV---GHGTEASITLAKMIIDRAPKGMS-RVYFGLSGSDANETNIKLIWYYNNV 138 (460)
T ss_dssp TCBCCHHHHHHHHHHHHHHSCCC--CCT---TCCCHHHHHHHHHHHHHSCTTEE-EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccccc--ccc---ccCCHHHHHHHHHHHhhCCCCcC-EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 34567999999999887643211 000 01234556788999999876654 9999999999999999877210
Q ss_pred -CCCCCCEEEEcCCCCccchHHHHHHHH---------HcCCeEEEEeCCC-----CCCCC--------HHHHHHhhc---
Q 012718 153 -NLKSGDEVILTVAEHHSAIVPWQLVAQ---------KTGANLKFLNLND-----DESPD--------LDKLKEMLS--- 206 (458)
Q Consensus 153 -~~~~g~~vl~~~~~~~s~~~~~~~~a~---------~~g~~~~~v~~~~-----~~~~d--------~~~l~~~l~--- 206 (458)
...++++|++.++.||+.......+.. .....+..++... +...+ +++|++.++
T Consensus 139 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~ 218 (460)
T 3gju_A 139 LGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG 218 (460)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC
Confidence 003578999999999987654333210 0112345565432 11122 578888886
Q ss_pred -CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCCC-
Q 012718 207 -RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGPT- 275 (458)
Q Consensus 207 -~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~- 275 (458)
+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+|+++ ++|.+++.
T Consensus 219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~ 296 (460)
T 3gju_A 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAY 296 (460)
T ss_dssp GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS
T ss_pred CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCC
Confidence 46789999999999998776 9999999999999999999998 43221 111123477775 67966553
Q ss_pred -ceeEEEEeccccccCC-------CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHH
Q 012718 276 -GIGFLFGKSDLLSAMP-------PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIH 346 (458)
Q Consensus 276 -g~G~l~~~~~~~~~l~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~ 346 (458)
.+|++++++++++.+. .+..+ ...+.+....++..++++.+...+ +++++
T Consensus 297 ~~lg~v~~~~~i~~~~~~~~~~~~~~~~~---------------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 355 (460)
T 3gju_A 297 APLSGVIVADRVWQVLVQGSDKLGSLGHG---------------------WTYSAHPICVAAGVANLELIDEMDLVTNAG 355 (460)
T ss_dssp SCCEEEEEEHHHHHHHHHHHHHHCSCSCC---------------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCeEEEEECHHHHHHHhcccccccccccC---------------------CCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4899999998877663 11111 122456666777777888765543 45566
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhhcCeEeccCCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
+....+.+.|.+.+.+++.+...... +.++++.+.... ..++.+.+.++ ||.++++.
T Consensus 356 ~~~~~~~~~l~~~l~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--- 424 (460)
T 3gju_A 356 ETGAYFRAELAKAVGGHKNVGEVRGD-------GMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP--- 424 (460)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEEEEE-------TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS---
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEeee-------eEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC---
Confidence 66666677777777777666544332 668888775311 34688888888 99998753
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..+++||+++...+++|+++++++|+++++++.+
T Consensus 425 --------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 425 --------QGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp --------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1479999999889999999999999999987654
No 201
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.94 E-value=2.4e-24 Score=213.27 Aligned_cols=346 Identities=10% Similarity=0.062 Sum_probs=216.9
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+......... ....+...++.+.++++++...+ +|+||+||++
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGse 115 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL------GMTNVPATQLAETLIDISPKKLT-RVFYSDSGAE 115 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS------SSEEHHHHHHHHHHHHHSCTTEE-EEEEESSHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHH
Confidence 345666543 4456899999999988653211100 01234556788999999875544 9999999999
Q ss_pred HHHHHHHHcCCCCCCC----CCEEEEcCCCCccchHHHHHHHHHc---------CCeEEEEeCCCCCCC-----------
Q 012718 141 AINLVAYSWGLSNLKS----GDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDESP----------- 196 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~----g~~vl~~~~~~~s~~~~~~~~a~~~---------g~~~~~v~~~~~~~~----------- 196 (458)
|+..++..+.....++ +++|++.+++||+.......+.... ...+..++.+..+..
T Consensus 116 A~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (448)
T 3dod_A 116 AMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQ 195 (448)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHH
Confidence 9999998873100002 5999999999997643322221100 112344554432221
Q ss_pred CHHHHHHhhc---CCceEEEEeccc-CcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcE
Q 012718 197 DLDKLKEMLS---RKTKLVVIHHIS-NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADF 263 (458)
Q Consensus 197 d~~~l~~~l~---~~~~~v~~~~~~-n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~ 263 (458)
|+++|++.++ +++++|+++.++ |++|.+.+ +++|.++|++||+++|+|++|+ +|.. ..+.....+|+
T Consensus 196 d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di 275 (448)
T 3dod_A 196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDL 275 (448)
T ss_dssp HHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCE
Confidence 4788998886 467888898888 99998877 9999999999999999999988 4321 11222334776
Q ss_pred EEecccCCCCCC--ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 264 LVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 264 ~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
++ ++|.++++ .+|++++++++++.+.......... ......+.+.....+..++++.+.+.+
T Consensus 276 ~t--~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~--------------~~~~t~~~~~~~~aaa~aal~~~~~~~ 339 (448)
T 3dod_A 276 MA--AGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTF--------------FHGHSYTGNQLGCAVALENLALFESEN 339 (448)
T ss_dssp EE--ECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCC--------------CCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred EE--ecccccCCcCceEEEEECHHHHHHhhhccccCCcc--------------cccCCCCcCHHHHHHHHHHHHHHhccc
Confidence 65 67965542 5899999999887776410000000 000122456666677777787765533
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-C-----------hHHHHHHHhhhcCeEec
Q 012718 342 -MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-H-----------PTDIATLLDQQYGVATR 408 (458)
Q Consensus 342 -~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-----------~~~~~~~l~~~~gi~~~ 408 (458)
.+++++....+.+.|.+ +..++.+.... ..+.++++.+... . ..++.+.+.++ ||.+.
T Consensus 340 ~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~ 410 (448)
T 3dod_A 340 IVEQVAEKSKKLHFLLQD-LHALPHVGDIR-------QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTR 410 (448)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTSTTEEEEE-------EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECC
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCCeEEEE-------eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEe
Confidence 33444444444555555 54554443322 2266888887632 1 26788899988 99997
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
++ .+++|++++...+++|+++++++|+++++++..+
T Consensus 411 ~~-------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 411 PL-------------GDVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp EE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 65 2689999998899999999999999999876543
No 202
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.94 E-value=1.5e-25 Score=233.10 Aligned_cols=302 Identities=10% Similarity=0.086 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++++.+++++|.+ +.+++++|+++|+..++.++ +++||+|+++.++|.+...+ +...|++++.++.
T Consensus 205 g~v~~~ee~la~l~G~d--~~i~~~~Gtt~a~~~~i~al----~~~GD~Vlv~~~~h~s~~~~----~~~~G~~~v~v~~ 274 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD--RSWSVVVGTSGSNRTIMQAC----MTDNDVVVVDRNCHKSIEQG----LMLTGAKPVYMVP 274 (755)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHH----CCTTCEEEEESSCCHHHHHH----HHHHCCEEEEECC
T ss_pred cHHHHHHHHHHHHhCCC--ceEEECCcHHHHHHHHHHHh----cCCCCEEEECCCchHHHHHH----HHHcCCEEEEEeC
Confidence 45667899999999987 26778888899999999998 78999999999999987654 3446999999987
Q ss_pred CCC-----CCC-----CHHHHHHhhcC--Cce--------EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCC
Q 012718 191 NDD-----ESP-----DLDKLKEMLSR--KTK--------LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVP 250 (458)
Q Consensus 191 ~~~-----~~~-----d~~~l~~~l~~--~~~--------~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g 250 (458)
+.+ +.+ |++++++++++ +++ +++++++ |++|.+.|+++|+++|+++|+++++|++|+.+
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 643 345 99999999864 343 8888887 79999999999999999999999999999753
Q ss_pred cc--cC--CCCC-CC--CcE------EEecccCCC-CCCceeEEEEecc--ccccCCCccccCcceEeeecCCCCCCCCC
Q 012718 251 HM--VV--DVQG-LD--ADF------LVASSHKMC-GPTGIGFLFGKSD--LLSAMPPFLGGGEMISDVFLDHSTFADPP 314 (458)
Q Consensus 251 ~~--~~--~~~~-~~--~d~------~~~s~~K~~-gp~g~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 314 (458)
.. +. +... .+ +|+ ++.|+||++ |+.++|+++++++ .++.. .+.. ..
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~-~~~~-----------------~~ 415 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFS-RFNQ-----------------AY 415 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHH-HHHH-----------------HH
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHH-HHHH-----------------HH
Confidence 21 10 1111 34 565 999999955 5677899999876 22100 0000 00
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC---------EEEeCCCCCCc---------
Q 012718 315 SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN---------IRIYGPKPSEH--------- 376 (458)
Q Consensus 315 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~---------~~~~~~~~~~~--------- 376 (458)
..++.+++++..++++.++++++...|.+...++..++++++++.|+++++ ++++.+.....
T Consensus 416 ~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (755)
T 2vyc_A 416 MMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDF 495 (755)
T ss_dssp HHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEG
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccccccccc
Confidence 235568999999999999999887764567788888999999999988766 77776542100
Q ss_pred ------------------------------Cc----cccEEEEEeC-----------CCChHHHHHHHhhhcCeEeccCC
Q 012718 377 ------------------------------VQ----RAALCSFNVE-----------NIHPTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 377 ------------------------------~~----~~~~v~~~~~-----------~~~~~~~~~~l~~~~gi~~~~g~ 411 (458)
.. -...++|.++ +++..++.+.|.+. ||.+....
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~-gI~~e~~~ 574 (755)
T 2vyc_A 496 ADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH-GIVPTRTT 574 (755)
T ss_dssp GGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTT-TCCCSEEC
T ss_pred ccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHC-CCEEeecC
Confidence 00 0125677776 34558899999885 99875322
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+|+++++++|.+|+++++++|.++.+..
T Consensus 575 ------------~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 575 ------------DFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp ------------SSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ------------CCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999987654
No 203
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.94 E-value=7.5e-27 Score=229.32 Aligned_cols=334 Identities=12% Similarity=0.027 Sum_probs=224.8
Q ss_pred CCeEEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhh-HHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 66 KKLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSA-KATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
+..+.|+.+.... .|+.+.+++.+.+... ..+...+.... + .....++|+++|++++ ++++ +|++|+|
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~--~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~-~iv~t~G 131 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVS--PWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDR-YIVFGVG 131 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEEC--TTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTC-EEEEESH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcC--CcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCC-EEEEeCC
Confidence 5678888777653 3355555665544211 11110011000 0 1114578888888886 4444 9999999
Q ss_pred hhHHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEE
Q 012718 138 ATEAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~ 213 (458)
+++++.+++.++..+. +++||.|+++.|+|+ .+...++..|++++... +|++.|++.+++++++|+
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~----~~~~~~~~~g~~~~~~~------~d~~~l~~~~~~~~k~v~ 201 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP----VFREQTKYFDKKGYVWA------GNAANYVNVSNPEQYIEM 201 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH----HHHHHHHHSCBTTEEEE------EEGGGGTTCSCGGGEEEE
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcc----cHHHHHHHcCCeeeeec------CCHHHHHHhhcCCceEEE
Confidence 9999999999882111 678999999999998 45666677798876543 477888888888899999
Q ss_pred EecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc-CCCCCCCCcEEEecccCCCCCCc--eeEEEEe-cccccc
Q 012718 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV-VDVQGLDADFLVASSHKMCGPTG--IGFLFGK-SDLLSA 289 (458)
Q Consensus 214 ~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~-~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~-~~~~~~ 289 (458)
+++++||||.+++ + +++ ++..+.|+++..+..+ .++. .+.+++++|+||.+|++| +||++++ +++++.
T Consensus 202 l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~ 273 (427)
T 2hox_A 202 VTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNN 273 (427)
T ss_dssp EESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHH
T ss_pred EcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHHHHH
Confidence 9999999999999 4 233 5678889887532221 2232 468999999999999888 8999995 677766
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHH
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS----------TIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~----------~~g~~~~~~~~~~l~~~l~~~ 359 (458)
+......+ ..+.+.....++..+|+... +.-+++.+++++++++++.+.
T Consensus 274 l~~~~~~~---------------------~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (427)
T 2hox_A 274 LLNYMTKN---------------------TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITAL 332 (427)
T ss_dssp HHHHHHHH---------------------TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---------------------CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 65432210 11233333334444554321 112456778888999999999
Q ss_pred HhcCCCEEE--eC-CCC-----CCcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 360 LLSIPNIRI--YG-PKP-----SEHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 360 L~~~~~~~~--~~-~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
|++++++++ +. +.. ......+.++|++++. +..++++.+. ++ ||.+++|..|.. .++++|||
T Consensus 333 L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~-gI~v~pg~~f~~-------~~~~~Ris 403 (427)
T 2hox_A 333 LDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNG-RINTQNGVGFEA-------SSRYVRLS 403 (427)
T ss_dssp HTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHT-TEECEEGGGGTS-------CTTEEEEE
T ss_pred HHhCcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHC-CEEEcCCCccCC-------CCCEEEEE
Confidence 999888876 22 110 0001125588899875 4456777765 55 999999885532 26799999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++ ++++++++++++|.+++++
T Consensus 404 ~~--~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 404 LI--KTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp CS--SCHHHHHHHHHHHHHHHTC
T ss_pred ec--CCHHHHHHHHHHHHHHHhh
Confidence 99 5889999999999998754
No 204
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.94 E-value=3.3e-24 Score=212.94 Aligned_cols=338 Identities=13% Similarity=0.062 Sum_probs=227.4
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .|..++.+.+++.+.+.+..... ... ....+..+++.+.++++++.+.+ +|+|++|+++
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~--~~~---~~~~~~~~~la~~l~~~~~~~~~-~v~~~~ggse 122 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYN--TFF---KTTHPAVVELSSLLAEVTPAGFD-RVFYTNSGSE 122 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC--TTS---SSCCHHHHHHHHHHHHHSCTTCC-EEEEESSHHH
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccc--ccc---ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHH
Confidence 345666543 34568999999999987643111 100 01234556788999999987655 9999999999
Q ss_pred HHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHH---------cCCeEEEEeCCC-----CCCCC-----
Q 012718 141 AINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLND-----DESPD----- 197 (458)
Q Consensus 141 a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~---------~g~~~~~v~~~~-----~~~~d----- 197 (458)
|+..++..+... .-.++++|++.+++|++.......+... ....+..++... ++ .|
T Consensus 123 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~ 201 (459)
T 4a6r_A 123 SVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFG 201 (459)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHH
Confidence 999999887310 0025789999999999876443332100 011344454332 11 34
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
+++|++.+. +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+
T Consensus 202 ~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~p 281 (459)
T 4a6r_A 202 VVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQP 281 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCC
Confidence 788888886 46688889888888998887 9999999999999999999987 43221 11123347
Q ss_pred cEEEecccCCCCC--CceeEEEEeccccccCC---CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGP--TGIGFLFGKSDLLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 262 d~~~~s~~K~~gp--~g~G~l~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
|+++ ++|.+++ -.+|++++++++++.+. ....+.. .+.+....++..++|+.
T Consensus 282 di~t--~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t---------------------~~~~~~~~aaa~aal~~ 338 (459)
T 4a6r_A 282 DLFT--AAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFT---------------------YSGHPVCAAVAHANVAA 338 (459)
T ss_dssp SEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHH---------------------HCSCHHHHHHHHHHHHH
T ss_pred Ceee--hhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCC---------------------CCCCHHHHHHHHHHHHH
Confidence 8776 6696554 34899999998877664 2222111 13455666666677877
Q ss_pred HHHhC-HHHHH-HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhh
Q 012718 337 LSTIG-MQKIH-AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQ 402 (458)
Q Consensus 337 ~~~~g-~~~~~-~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~ 402 (458)
+.+.+ +++++ +....+.+.|.+.|.+.+.+...... +.++.+.+.... ..++.+.+.++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (459)
T 4a6r_A 339 LRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGV-------GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN 411 (459)
T ss_dssp HHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEE-------TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-------EEEEEEEEecCccccccccchHHHHHHHHHHHHHC
Confidence 65543 33444 45555556665666666656544332 668888775311 45788888888
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
||.++++. +++||++++..+++|+++++++|+++++++.
T Consensus 412 -Gv~v~~~g-------------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 412 -NLIMRACG-------------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp -TEECEEET-------------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CeEEecCC-------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998641 6899999988999999999999999987653
No 205
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.94 E-value=1.6e-25 Score=215.40 Aligned_cols=293 Identities=15% Similarity=0.101 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCE--EEEcCCCCccchHHHHHHHHHcCCeEEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDE--VILTVAEHHSAIVPWQLVAQKTGANLKF 187 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~--vl~~~~~~~s~~~~~~~~a~~~g~~~~~ 187 (458)
....+++++.+++++|.+ ..++++||++|+.+++.++ .++||. |+++.+.|.+.. .....+...|++++.
T Consensus 47 ~~~~~~l~~~la~~~~~~---~~i~~~~g~~a~~~a~~~~----~~~g~~~vvi~~~~~~~~~~-~~~~~~~~~g~~~~~ 118 (359)
T 3pj0_A 47 GAVIEDFETKIAKILGKQ---SAVFFPSGTMAQQIALRIW----ADRKENRRVAYHPLSHLEIH-EQDGLKELQQITPLL 118 (359)
T ss_dssp SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----HHHHTCCEEEECTTCHHHHS-STTHHHHHHCCEEEE
T ss_pred CHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----HhcCCCcEEEEeccceeeeh-hcchHHHhcCceEEe
Confidence 455678999999999986 3466789999999999887 466775 555555544321 111222445999999
Q ss_pred EeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC-cccccHHH---HHHHHHhcCcEEEEeccccCCcc------cCCCC
Q 012718 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILPIEE---IVHWSHDVGAKVLVDACQSVPHM------VVDVQ 257 (458)
Q Consensus 188 v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~~l~~---i~~l~~~~~~~vivD~a~~~g~~------~~~~~ 257 (458)
++. +++.+|+++++++ .+++++|++++++||+ |.++|.++ |.++|++||+++|+|++|..+.. +.++.
T Consensus 119 v~~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 196 (359)
T 3pj0_A 119 LGT-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC 196 (359)
T ss_dssp CSC-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH
T ss_pred cCC-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh
Confidence 987 5678899999988 7789999999999998 79888555 59999999999999999875432 11111
Q ss_pred CCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
.+.|+++.|+||.++ |.| |+++.++++++.+.......+ ....+.+....+++ .+++.
T Consensus 197 -~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~a~~-~~l~~ 255 (359)
T 3pj0_A 197 -ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYG------------------GDLISLYPYILSAD-YYFEK 255 (359)
T ss_dssp -TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT------------------CCCSCCHHHHHHHH-HHHHH
T ss_pred -ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhC------------------CCcchhHHHHHHHH-HHHHH
Confidence 357999999999655 544 888888888776653211000 00011122222222 23322
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCC
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
. . +..++..++++++.+.|++++++++...+.. ++++++.++.. +..++.+.|.++ ||.+++|..+
T Consensus 256 ~----~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~v~~g~~~ 324 (359)
T 3pj0_A 256 R----I-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPV-----SNMFHVYFENSADEIGAILTKIQDET-GVGISGYLQE 324 (359)
T ss_dssp H----G-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCS-----SSEEEEEESSCHHHHHHHHHHHHHHH-CEECCSCCEE
T ss_pred H----H-HHhHHHHHHHHHHHHHHhhCCCceeeccCCc-----ceEEEEEecCccchhHHHHHHHHHhc-CcEecCCccc
Confidence 2 2 2334467788999999999999998532222 66788887642 356788889888 9999988643
Q ss_pred ChhhHhhcCCCCeEEEeeCC---CCCHHHHHHHHHHHHHH
Q 012718 414 AQPLHRYLGVNASARASLHF---YNTKEDVDEFIHALNET 450 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~---~~t~~di~~l~~~l~~~ 450 (458)
.. ...+++|++++. ..+.+++++.+++|.+.
T Consensus 325 ~~------~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 325 KS------ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EE------TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cC------CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 21 114689998863 24788898888888765
No 206
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.93 E-value=3.8e-26 Score=219.55 Aligned_cols=291 Identities=13% Similarity=0.090 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC--EEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD--EVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~--~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
...+++++.+++++|.+ ..++++||++|+.+++.++ .++|| .|+++.+.|.+.... ...+...|++++.+
T Consensus 47 ~~~~~l~~~la~~~~~~---~~i~~~~G~~a~~~al~~~----~~~gd~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v 118 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMD---DAVFFPSGTMAQQVALRIW----SDETDNRTVAYHPLCHLEIHEQ-DGLKELHPIETILV 118 (357)
T ss_dssp TTHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----HHHHTCCEEEECTTCHHHHSST-THHHHHSSCEEEEC
T ss_pred hHHHHHHHHHHHHhCCC---cEEEecCcHHHHHHHHHHH----hhcCCCcEEEecccceeeeecc-chhhhccCcEEEEe
Confidence 34568889999999985 4566688999999998887 56777 677777766543211 11334558999888
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccCC------cccCCCCC
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSVP------HMVVDVQG 258 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~g------~~~~~~~~ 258 (458)
+. +++.+|+++++++. ++++|++++++||+ |.+++ +++|+++|++||+++|+|++|..+ .....+.
T Consensus 119 ~~-~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~- 194 (357)
T 3lws_A 119 GA-ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA- 194 (357)
T ss_dssp SC-TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-
T ss_pred cC-CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-
Confidence 84 45778999999884 38999999999998 99887 889999999999999999998621 1111111
Q ss_pred CCCcEEEecccCCC-CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 259 LDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 259 ~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
...|+++.|+||.+ ||.| |+++.++++++.+.......+ ....+.+.....++ .+++..
T Consensus 195 ~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~l~~~ 254 (357)
T 3lws_A 195 GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYG------------------GDLISLYPYIVSAD-YYYELR 254 (357)
T ss_dssp TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT------------------CCCSCCHHHHHHHH-HHHHHH
T ss_pred hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhc------------------CCcccchHHHHHHH-HHHHHH
Confidence 24788999999977 6777 999998887766543221000 00011222222222 333321
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCC
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
.+.+ ++..++++++.+.|++++++++...++. ++++++.+++. +..++.+.|.++ ||.+++|..+.
T Consensus 255 ----~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~g~~~~ 323 (357)
T 3lws_A 255 ----KDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPV-----SNMFHLHFDGQAADISPKLEQVQEET-GLGFVGYLVDK 323 (357)
T ss_dssp ----TTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCS-----SSEEEEEEESCHHHHHHHHHHHHHHH-CEESCSCCEEC
T ss_pred ----HHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCc-----ceEEEEEecCChHHHHHHHHHHHHhc-CeEEecccccC
Confidence 1222 3356778899999999999998533322 67888888753 256788889888 99999885321
Q ss_pred hhhHhhcCCCCeEEEeeCCC---CCHHHHHHHHHHHHHHH
Q 012718 415 QPLHRYLGVNASARASLHFY---NTKEDVDEFIHALNETV 451 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~---~t~~di~~l~~~l~~~~ 451 (458)
....++|++++.. .+.+++++.+++|.+++
T Consensus 324 -------~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 324 -------DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp -------SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred -------CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 1134899998743 47889999998888764
No 207
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.93 E-value=1e-24 Score=215.86 Aligned_cols=334 Identities=12% Similarity=0.071 Sum_probs=231.1
Q ss_pred EEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 69 VYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 69 i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
-|+|..+ .|..++.+.+++.+.+.+...... . ....+...++++.++++++...+ +|+|++||++|+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~-----~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA~ 148 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMF-G-----GLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVSV 148 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCS-S-----SEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccc-c-----ccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHHH
Confidence 5666543 445789999999999876422110 1 11234556899999999976654 999999999999
Q ss_pred HHHHHHcCCC---CC-CCCCEEEEcCCCCccchHHHHHHH----------HHcCCeEEEEeCCCC--CCCCHHHHHHhhc
Q 012718 143 NLVAYSWGLS---NL-KSGDEVILTVAEHHSAIVPWQLVA----------QKTGANLKFLNLNDD--ESPDLDKLKEMLS 206 (458)
Q Consensus 143 ~~~~~~l~~~---~~-~~g~~vl~~~~~~~s~~~~~~~~a----------~~~g~~~~~v~~~~~--~~~d~~~l~~~l~ 206 (458)
+.++..+... .- ..+++|++.+++|++.......+. ......+..++...+ ...|+++|++.++
T Consensus 149 ~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~ 228 (457)
T 3tfu_A 149 EVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLA 228 (457)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHH
Confidence 9999876210 00 234589999999997654333220 111123344444322 2248889999987
Q ss_pred ---CCceEEEEec-ccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEecccCCCC
Q 012718 207 ---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 207 ---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~~g 273 (458)
+++++|+++. ++|++|.+.+ +++|.++|++||+++|+|++|. +|... . +.....+|++ +++|.++
T Consensus 229 ~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~ 306 (457)
T 3tfu_A 229 QHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALT 306 (457)
T ss_dssp HHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGG
T ss_pred hCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhh
Confidence 6789999999 9999999987 9999999999999999999987 43221 1 1123347877 6789554
Q ss_pred C--CceeEEEEeccccccCC---C--ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 274 P--TGIGFLFGKSDLLSAMP---P--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 274 p--~g~G~l~~~~~~~~~l~---~--~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+ ..+|++++++++++.+. + +..+ ...+.+....++..++|+.+.+. .+.
T Consensus 307 gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~---------------------~t~~~n~~a~aaa~aaL~~~~~~---~~~ 362 (457)
T 3tfu_A 307 GGYLSLAATLCTADVAHTISAGAAGALMHG---------------------PTFMANPLACAVSVASVELLLGQ---DWR 362 (457)
T ss_dssp TTSSCCEEEEEEHHHHHHHHHSSSCSCCCC---------------------CTTTTCHHHHHHHHHHHHHHHTS---CHH
T ss_pred CCCcceEEEEEcHHHHHHhhccCCCceeEe---------------------cCCCcCHHHHHHHHHHHHHHhhh---HHH
Confidence 4 25899999998876652 1 1111 11245666677777778877653 456
Q ss_pred HHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcC
Q 012718 347 AYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG 422 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g 422 (458)
++.+++.+++.+.|+++ +++..... .+.++++.+.. .+..++.+.|.++ ||.+++.
T Consensus 363 ~~~~~~~~~l~~~L~~l~~~~~v~~vr~-------~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~------------ 422 (457)
T 3tfu_A 363 TRITELAAGLTAGLDTARALPAVTDVRV-------CGAIGVIECDRPVDLAVATPAALDR-GVWLRPF------------ 422 (457)
T ss_dssp HHHHHHHHHHHHHHGGGGGSTTEEEEEE-------CSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeeec-------CCeEEEEEECCcccHHHHHHHHHHC-CeEEEec------------
Confidence 67777788888887654 44443222 26688888864 3567899999998 9999763
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 423 VNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 423 ~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+++|++++...|++|+++++++|+++++++..
T Consensus 423 -~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 423 -RNLVYAMPPYICTPAEITQITSAMVEVARLVGS 455 (457)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 358999999888999999999999999987643
No 208
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.93 E-value=4.4e-24 Score=211.42 Aligned_cols=341 Identities=14% Similarity=0.121 Sum_probs=223.4
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+.+..... . .....+...++.+.++++++.+..++|+||+||++
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~---~---~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse 136 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC---F---MVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAE 136 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT---T---TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccc---c---CcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHH
Confidence 345666543 34568999999999987642211 0 01123455678899999998653348999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC-----CeEEEEeCCCCC----CCC--------H
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDDE----SPD--------L 198 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g-----~~~~~v~~~~~~----~~d--------~ 198 (458)
|+..++..+. ...++++|++.+++||+.......+... .+ ..+..++..... ..+ +
T Consensus 137 A~~~alk~a~--~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (453)
T 4ffc_A 137 AVENAIKVAR--LATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAI 214 (453)
T ss_dssp HHHHHHHHHH--HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHH--HhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHH
Confidence 9999997652 1135689999999999876544433110 01 145666654211 112 3
Q ss_pred HHHHHhhcC-CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEecc
Q 012718 199 DKLKEMLSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASS 268 (458)
Q Consensus 199 ~~l~~~l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s~ 268 (458)
+.+++.+.+ ++++|+++..++..|.+.+ +++|.++|++||+++|+|++|. +|... . +.....+|+++ +
T Consensus 215 ~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t--~ 292 (453)
T 4ffc_A 215 SRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVT--M 292 (453)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--E
T ss_pred HHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHh--h
Confidence 556666654 4577777777767777776 9999999999999999999987 43221 1 11123467665 6
Q ss_pred cCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHH
Q 012718 269 HKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIH 346 (458)
Q Consensus 269 ~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~ 346 (458)
+|.+++ -.+|++++++++++.+.+...+. ..+.+....++..++++.+...+ .++++
T Consensus 293 sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~---------------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 351 (453)
T 4ffc_A 293 AKGIAGGMPLSAVTGRAELMDAVYAGGLGG---------------------TYGGNPVTCAAAVAALGVMRELDLPARAR 351 (453)
T ss_dssp CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC---------------------SSSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhcCCcCeEEEEECHHHHhhhcccCcCC---------------------CCCcCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 796654 23899999999887776543211 12455666666677777765533 23344
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--------CChHHHHHHHhhhcCeEeccCCCCChhhH
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--------IHPTDIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
+....+.+.|.+.+.+++.+..... .+.++++.+.. ....++.+.+.++ ||.+.++...
T Consensus 352 ~~~~~l~~~l~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----- 418 (453)
T 4ffc_A 352 AIEASVTSRLSALAEEVDIIGEVRG-------RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGTF----- 418 (453)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEE-------ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECTT-----
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEe-------eceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCCC-----
Confidence 4444444445554455555543322 26688887732 1245688888888 9999876421
Q ss_pred hhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 419 RYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 419 ~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+|++++...+++|+++++++|+++++++.+
T Consensus 419 -----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 419 -----GNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp -----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred -----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999889999999999999999987653
No 209
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.93 E-value=1.8e-25 Score=217.21 Aligned_cols=328 Identities=14% Similarity=0.048 Sum_probs=215.7
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCC----CCC--cE
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NAS----DSG--EI 132 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~----~~~--~v 132 (458)
++.|.|..|.. .++++.+.++.. ....... .+. |....+..++|+++++++ +.. .++ ++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~-~~~------Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i 100 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYK-EKP------YLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICT 100 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCC-CCC------CCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEE
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCC-CCC------CCCCCCcHHHHHHHHHHHcCCCCccccccceEE
Confidence 46789987752 245788888776 3311111 110 111233457888888876 322 112 36
Q ss_pred EEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CC-CCCCCHHHHHHhhcC--C
Q 012718 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-ND-DESPDLDKLKEMLSR--K 208 (458)
Q Consensus 133 ~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~--~ 208 (458)
++|.|+++|+.+++.++. .+.+ |+|++++|+|+ .+...++..|++++.+|+ ++ ++.+|++.+++.+++ +
T Consensus 101 ~~t~G~~~al~~~~~~l~--~~~~-d~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 173 (405)
T 3k7y_A 101 IQCIGGTGAIFVLLEFLK--MLNV-ETLYVTNPPYI----NHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPN 173 (405)
T ss_dssp EEEEHHHHHHHHHHHHHH--TTTC-CEEEEESSCCH----HHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCS
T ss_pred EEcCchHHHHHHHHHHHH--hcCC-CEEEEeCCCCH----hHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCC
Confidence 899999999999998872 1237 99999999999 556777888999999998 33 477899999999864 5
Q ss_pred ceEEEEecc-cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------cC-CC-CCCCCcEEEecccCCCCC
Q 012718 209 TKLVVIHHI-SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DV-QGLDADFLVASSHKMCGP 274 (458)
Q Consensus 209 ~~~v~~~~~-~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~~-~~-~~~~~d~~~~s~~K~~gp 274 (458)
++++++..+ +||||.+++ +++|+++|++||++||+|++|..-.. ++ .+ ......+++.|+||.||.
T Consensus 174 ~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l 253 (405)
T 3k7y_A 174 GSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSL 253 (405)
T ss_dssp SCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCC
T ss_pred CeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCC
Confidence 578887655 899999999 66788999999999999999872111 01 01 122356888999999998
Q ss_pred Cc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH--H-HH--hCHHH
Q 012718 275 TG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY--L-ST--IGMQK 344 (458)
Q Consensus 275 ~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~--~-~~--~g~~~ 344 (458)
+| +||+++ ++++++.+....... .+...++++.....++..+++. + .. ..+.+
T Consensus 254 ~GlRiG~~~~~~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~ 316 (405)
T 3k7y_A 254 YGERAGALHIVCKNQEEKKIVFNNLCFI-----------------VRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQ 316 (405)
T ss_dssp TTTTEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccccceEEEEEeCCHHHHHHHHHHHHHH-----------------HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88 999875 333333221100000 0011123444444444444432 1 11 12566
Q ss_pred HHHHHHHHHHHHHHHHh----cCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 345 IHAYEMELAKYLYENLL----SIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~----~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
+++++++.++.+.+.|+ ++. ++++..+. .+.++|+.++. ++++.|. ++||.+.|+
T Consensus 317 ~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~------gg~f~~~~l~~----~~~~~L~-~~gV~v~p~------- 378 (405)
T 3k7y_A 317 LSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQ------RGLFSFVPLLA----KIAEHLK-THHIYIINN------- 378 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSC------CSSEEECGGGG----GGTTTTT-TTTEECCTT-------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCC------ceEEEecCCCH----HHHHHHH-HCCEeecCC-------
Confidence 77888999999999998 762 14444433 14477766542 4456674 449999764
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
. |||++. .++++|++++++|++++++
T Consensus 379 --------~-Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 379 --------G-RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp --------S-EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred --------C-eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 1 999974 5778999999999999875
No 210
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=1.5e-25 Score=219.42 Aligned_cols=323 Identities=13% Similarity=0.076 Sum_probs=212.5
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCC----CCcEE--EeC
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASD----SGEIV--FTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~----~~~v~--~t~ 136 (458)
++++.|..+.. . +.++.+.+++.+.. .. +.+ ++.......++|+++++++ |... +++|. .|.
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~---~~----~~~--~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~ 111 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQAT---LG----TNM--DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTL 111 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCC---CC----SCC--CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEES
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcC---cc----ccc--cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecc
Confidence 45677877764 3 33444555555541 11 111 1111233457889999876 6541 23674 599
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhc---CCceE
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RKTKL 211 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---~~~~~ 211 (458)
++++++..+...+. ...++||+|++++|+|.+ +...++..|++++.+++. +++.+|++++++.++ +++++
T Consensus 112 ~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 186 (409)
T 4eu1_A 112 GGTGALRIGGDLLN-RFVANCNRIYGPDVGYPN----HESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVI 186 (409)
T ss_dssp HHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTH----HHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEE
T ss_pred cchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHh----HHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEE
Confidence 99999998755432 125789999999999994 466667789999999983 457789999999986 35677
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------cC-CC-CCCCCcEEEecccCCCCCCc--
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DV-QGLDADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~~-~~-~~~~~d~~~~s~~K~~gp~g-- 276 (458)
+++++++||||.+++ +++|+++|+++|+++|+|++|+.... ++ .+ ......++++|+||.+|++|
T Consensus 187 i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r 266 (409)
T 4eu1_A 187 LVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHR 266 (409)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGC
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCC
Confidence 888999999999999 45699999999999999999874321 11 11 22335678899999999777
Q ss_pred eeEE--EEe-cc----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-----HhCHHH
Q 012718 277 IGFL--FGK-SD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQK 344 (458)
Q Consensus 277 ~G~l--~~~-~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~ 344 (458)
+|++ ++. ++ +++.+..... ....+++.....++..+++... ...+++
T Consensus 267 iG~~~~v~~~~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 325 (409)
T 4eu1_A 267 CGALHISTASAEEAKRLVSQLALLIR---------------------PMYNNPPLYGAWVVSSILKDPQLTALWKKELKQ 325 (409)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHH---------------------HHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHh---------------------hhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8997 554 44 4343332211 0012344445555555554211 112677
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 345 IHAYEMELAKYLYENLLSIPN----IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
.+++++++++++.+.|+++ + +++..+. .+.+++..+ +. ++...+.+++||.+.++
T Consensus 326 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~------~~~~~~~~~---~~-~~~~~ll~~~gv~v~p~---------- 384 (409)
T 4eu1_A 326 MSSRIAEVRKRLVSELKAC-GSVHDWSHIERQ------VGMMAYTGL---TR-EQVELLRSEYHIYMTLN---------- 384 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHS------CSSEEECCC---CH-HHHHHHHHHHCEECCTT----------
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCcceecCC------ceEEEEeCC---CH-HHHHHHHHcCCEEEcCC----------
Confidence 8889999999999999886 3 4443332 133444333 33 44555553339998753
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.||+++. .+.+|+++++++|++++
T Consensus 385 ------~Ri~~~~-~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 ------GRAAVSG-LNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ------CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ------CEEEEEe-cCHhhHHHHHHHHHHHh
Confidence 3888875 45678999999999876
No 211
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.93 E-value=4.4e-24 Score=211.36 Aligned_cols=339 Identities=12% Similarity=0.106 Sum_probs=220.8
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|..++.+.+++.+.+.+.... .. .....+...++.+.++++++....++|+||+|||
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~---~~---~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs 132 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT---CF---MVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGS 132 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCC---TT---TTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccc---cC---CccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHH
Confidence 3445676543 3456899999999987653211 10 0112345567888999998755334899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC-----CeEEEEeCCCC------CC-------C
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDD------ES-------P 196 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g-----~~~~~v~~~~~------~~-------~ 196 (458)
+|+..++..+. ....+++|++.+++||+.......+... .+ ..+..++.... +. .
T Consensus 133 eA~~~Alk~a~--~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 210 (451)
T 3oks_A 133 EAVENAVKIAR--SHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGEL 210 (451)
T ss_dssp HHHHHHHHHHH--HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHH
T ss_pred HHHHHHHHHHH--HhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHH
Confidence 99999997762 1135689999999999876544433110 01 14566665411 00 1
Q ss_pred CHHHHHHhhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCc
Q 012718 197 DLDKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDAD 262 (458)
Q Consensus 197 d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d 262 (458)
+++.+++.+. .++++|+++.+++..|.+.+ +++|.++|++||+++|+|++|. ++.. ..+.....+|
T Consensus 211 ~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd 290 (451)
T 3oks_A 211 AAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPD 290 (451)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCC
Confidence 2444444443 35678888888888888877 9999999999999999999997 3321 1122233477
Q ss_pred EEEecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 263 FLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 263 ~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
++ +++|.+++ -.+|++++++++++.+.+...+. ..+.+.....+..++++.+.+.+
T Consensus 291 i~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~aal~~~~~~~ 347 (451)
T 3oks_A 291 LI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGG---------------------TYGGNPIACAAALATIETIESEG 347 (451)
T ss_dssp EE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCC---------------------SSSSCHHHHHHHHHHHHHHHHTT
T ss_pred ee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCC---------------------CCCCCHHHHHHHHHHHHHHhhhh
Confidence 76 57796654 23899999999887776543211 12456666667677787765532
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--------CChHHHHHHHhhhcCeEeccCCC
Q 012718 342 -MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--------IHPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 342 -~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
.+++++....+.+.|.+.+.+.+.+..... .+.++++.+.. ....++.+.+.++ ||.+.++..
T Consensus 348 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~ 419 (451)
T 3oks_A 348 LVARAQQIEKIMKDRLGRLQAEDDRIGDVRG-------RGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGT 419 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-------ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE-------eeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCC
Confidence 233344444444444444445555543322 26688887732 1245688888888 999987542
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ .+.+|++++...+++|+++++++|++++++
T Consensus 420 ~----------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 420 Y----------GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp T----------SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred C----------CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 468999999889999999999999998864
No 212
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.93 E-value=1.5e-23 Score=208.19 Aligned_cols=336 Identities=12% Similarity=0.017 Sum_probs=226.4
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|..++.+.+++.+.+.+......... ...+...++.+.|+++++.+.+ +|+|++||+
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-----~~~~~~~~lae~l~~~~~~~~~-~v~~~~sGs 126 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFK-----TTHVPAIALAQKLAELAPGDLN-HVFFAGGGS 126 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSS-----EECHHHHHHHHHHHHHSCTTEE-EEEEESSHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccc-----cCCHHHHHHHHHHHHhCCCCCC-EEEEeCCHH
Confidence 3445676543 455689999999999877431110000 1234456788999999876544 999999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHH----H----cCCeEEEEeCCC-----CCCCC-----
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ----K----TGANLKFLNLND-----DESPD----- 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~----~----~g~~~~~v~~~~-----~~~~d----- 197 (458)
+|+..++..+... ...++++|++.+++|++.......+.. + ....+..++... ++ .|
T Consensus 127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~ 205 (472)
T 3hmu_A 127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFG 205 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHH
Confidence 9999999887310 002578999999999987644332210 0 011345555432 11 23
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
+++|++.++ +++++|+++.+++++|.+.+ +++|.++|+++|+++|+|++|. +|... .+.....+
T Consensus 206 ~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~p 285 (472)
T 3hmu_A 206 LARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRP 285 (472)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCC
Confidence 778888886 46789999999999999987 9999999999999999999997 43321 11123347
Q ss_pred cEEEecccCCCCCC--ceeEEEEeccccccCCC--ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPP--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 262 d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
|+++ ++|.++.. .+|++++++++++.+.+ +..++ ..+.+....++..++|+.+
T Consensus 286 di~t--~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~---------------------t~~~np~a~aAa~aaL~~~ 342 (472)
T 3hmu_A 286 HIMT--IAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGY---------------------TYSGHPVAAAVALENLRIL 342 (472)
T ss_dssp SEEE--ECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCC---------------------TTTTCHHHHHHHHHHHHHH
T ss_pred ceee--echhhhcCCcceEEEEECHHHHHhcccCCccccC---------------------CCCCCHHHHHHHHHHHHHH
Confidence 8876 56966543 48999999988776632 11110 1235566667777778777
Q ss_pred HHhCHHHHHHHHH-HHHHHHHHHHhc---CCCEEEeCCCCCCcCccccEEEEEeCCCC-------------hHHHHHHHh
Q 012718 338 STIGMQKIHAYEM-ELAKYLYENLLS---IPNIRIYGPKPSEHVQRAALCSFNVENIH-------------PTDIATLLD 400 (458)
Q Consensus 338 ~~~g~~~~~~~~~-~l~~~l~~~L~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~l~ 400 (458)
.+. .+.++.+ ++.+++.+.|++ .+.+..... .+.++.+.+.... ..++.+.|.
T Consensus 343 ~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-------~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (472)
T 3hmu_A 343 EEE---NILDHVRNVAAPYLKEKWEALTDHPLVGEAKI-------VGMMASIALTPNKASRAKFASEPGTIGYICRERCF 412 (472)
T ss_dssp HHT---THHHHHHHTHHHHHHHHHHGGGGSTTEEEEEE-------ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHH
T ss_pred HHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-------cCceEEEEEecCccccccccchhHHHHHHHHHHHH
Confidence 553 4455555 666666666654 344443322 2668888775310 456788888
Q ss_pred hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 401 QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 401 ~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++ ||.++++ .+++||++++..+++|+++++++|+++++++.
T Consensus 413 ~~-Gv~v~~~-------------g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 413 AN-NLIMRHV-------------GDRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HT-TBCCEEE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HC-CcEEEec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88 9998764 16899999988999999999999999987653
No 213
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.93 E-value=1.8e-25 Score=222.83 Aligned_cols=341 Identities=15% Similarity=0.091 Sum_probs=215.0
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
.+..|+|..+..+. +.+.+++.+.+.. +... +.......+++++++++++.+ ++++|+|||+|+.++
T Consensus 39 ~~~~ylD~~~~~~~-~~v~~a~~~~l~~-------~~~~--y~~~~~~~~l~~~la~~~~~~---~v~~t~~gt~A~~~a 105 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-GAVTQSMQAAMMR-------GDEA--YSGSRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIY 105 (467)
T ss_dssp GGGCSEECSCCSSC-SCCCHHHHHHTTS-------CCCC--SSSCHHHHHHHHHHHHHHCCS---EEEEEC--CCSHHHH
T ss_pred CCCeeEecccCCCc-HHHHHHHHHHhcc-------Ccce--eccCchhHHHHHHHHHHhCcC---cEEEcCCcHHHHHHH
Confidence 34567887655544 6666776666432 1000 111234567899999999874 899999999999999
Q ss_pred HHHcCCCCCCC-----C----CEEEEcCCCCccchHHHHHHHHHcCCeEEEEe------CC----CCCCCCHHHHHHhhc
Q 012718 146 AYSWGLSNLKS-----G----DEVILTVAEHHSAIVPWQLVAQKTGANLKFLN------LN----DDESPDLDKLKEMLS 206 (458)
Q Consensus 146 ~~~l~~~~~~~-----g----~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~------~~----~~~~~d~~~l~~~l~ 206 (458)
+.++ .++ | |+|++. ..|.... .......|+.+.... .+ .++.+|+++|+++++
T Consensus 106 l~~~----~~~~~~~~G~~~~d~Ii~~-~~h~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~ 177 (467)
T 2oqx_A 106 IPVL----IKKREQEKGLDRSKMVAFS-NYFFDTT---QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIE 177 (467)
T ss_dssp HHHH----HHHHHHHHCCCTTTCEEEE-SSCCHHH---HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHH
T ss_pred HHHH----hccccccCCCCccceEEec-ccccccc---hhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHH
Confidence 9987 345 6 887776 4554322 223344566655432 12 246689999999997
Q ss_pred C----CceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccC-----------CcccCCCCC------CCC
Q 012718 207 R----KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQG------LDA 261 (458)
Q Consensus 207 ~----~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~-----------g~~~~~~~~------~~~ 261 (458)
+ ++++|++++++|++ |.+++ +++|+++|++||+++|+|++|+. +....+... ...
T Consensus 178 ~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 257 (467)
T 2oqx_A 178 EVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYA 257 (467)
T ss_dssp HHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGC
T ss_pred hcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccC
Confidence 3 78999999999998 77776 77999999999999999987765 222222111 236
Q ss_pred cEEEecccCCCCCCceeEEEEecc-cccc---CCCcc-ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPTGIGFLFGKSD-LLSA---MPPFL-GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 262 d~~~~s~~K~~gp~g~G~l~~~~~-~~~~---l~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
|++++|+||.+|++-.|+++.+++ +++. +.+.. .+++ ..+.++.+...+.++..+++.
T Consensus 258 d~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~al~~~l~~ 320 (467)
T 2oqx_A 258 DMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG-----------------FPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_dssp SEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTS-----------------SCCCCCCCHHHHHHHHHHHHH
T ss_pred CeEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCC-----------------cccccchhhhHHHHHHHhhHh
Confidence 888999999887542377777766 3332 22221 1111 011233443333333322221
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC----CCC-----hHHHHHHH-hhhcCeE
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE----NIH-----PTDIATLL-DQQYGVA 406 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~-----~~~~~~~l-~~~~gi~ 406 (458)
. .. +...++..++.+++.+.|.++ ++++. +. .+.++++.++ +.+ ..++.+.| .++ ||.
T Consensus 321 ~--~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-gv~ 388 (467)
T 2oqx_A 321 G--MN-LDWLAYRIAQVQYLVDGLEEI-GVVCQ-QA------GGHAAFVDAGKLLPHIPADQFPAQALACELYKVA-GIR 388 (467)
T ss_dssp T--TC-HHHHHHHHHHHHHHHHHHHHT-TCCEE-EE------CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHH-CEE
T ss_pred h--hh-HHHHHHHHHHHHHHHHHHHHC-CCeee-cC------CceEEEEechhhcccCCcccccHHHHHHHHHHhc-Cce
Confidence 1 11 123344567788899999887 77766 43 1567888773 333 23458888 777 999
Q ss_pred eccCCCCChhhHh-----hcCCCCeEEEeeCCC-CCHHHHHHHHHHHHHHHHhhhc
Q 012718 407 TRSGHHCAQPLHR-----YLGVNASARASLHFY-NTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 407 ~~~g~~~~~~~~~-----~~g~~~~lRis~~~~-~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.++..|...... .....+++|++++.. ++++||++++++|++++++.++
T Consensus 389 ~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 389 AVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp CEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred ecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 9875422110000 000137999999988 9999999999999999987653
No 214
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.93 E-value=6.3e-24 Score=209.56 Aligned_cols=327 Identities=17% Similarity=0.138 Sum_probs=215.4
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+.+...+ + + ......++++.++++++ .. ++|+|++|||+
T Consensus 54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~-~-----~~~~~~~l~~~la~~~~-~~-~~v~~~~sGse 122 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY---G-T-----PTALEVKFAKMLKEAMP-AL-DKVRFVNSGTE 122 (434)
T ss_dssp CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC---S-S-----CCHHHHHHHHHHHHHCT-TC-SEEEEESSHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC---C-C-----CCHHHHHHHHHHHHhCC-CC-CEEEEeCchHH
Confidence 445666543 2346899999999988763111 1 0 12345578889999987 33 49999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH----------------cCCeEEEEeCCCCCCCCHHHHHHh
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------------TGANLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~----------------~g~~~~~v~~~~~~~~d~~~l~~~ 204 (458)
|+..++..+. ...++++|++.+++|++........... .+..+..+|.+ |+++|++.
T Consensus 123 a~~~ai~~a~--~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~ 195 (434)
T 3l44_A 123 AVMTTIRVAR--AYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEA 195 (434)
T ss_dssp HHHHHHHHHH--HHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHH
T ss_pred HHHHHHHHHH--HhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHH
Confidence 9999998762 1236789999999998754321111000 00123333332 88999998
Q ss_pred hc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccC---Ccc-cCCCCCCCCcEEEecccCCCC
Q 012718 205 LS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV---PHM-VVDVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 205 l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~---g~~-~~~~~~~~~d~~~~s~~K~~g 273 (458)
++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|.. |.. ..+.....+|++ +++|.+|
T Consensus 196 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~ 273 (434)
T 3l44_A 196 LDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIG 273 (434)
T ss_dssp HHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGG
T ss_pred HHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhc
Confidence 87 46788999998889999987 99999999999999999999972 211 011112346765 5779655
Q ss_pred -CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 274 -PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 274 -p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
+-.+|++++++++++.+.+.... ......+.+....++..++++.+.+ +.+.++.+++
T Consensus 274 ~G~~iG~~~~~~~i~~~~~~~~~~------------------~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~ 332 (434)
T 3l44_A 274 GGLPIGAYGGKKEIMEQVAPLGPA------------------YQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDEL 332 (434)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSB------------------CCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHH
T ss_pred CCcCeeeEEEcHHHHHhhccCCCc------------------ccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHH
Confidence 33499999999887776542100 0011234566666777777776644 3444555555
Q ss_pred HHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCCCC--------------hHHHHHHHhhhcCeEeccCCCCC
Q 012718 353 AKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVENIH--------------PTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 353 ~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
.+++.+.|.+ .+...... ..+.++++.+.... ..++.+.|.++ ||.++++.
T Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--- 401 (434)
T 3l44_A 333 GATLEKGILEQAAKHNIDITLN-------RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSK--- 401 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEE-------EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSST---
T ss_pred HHHHHHHHHHHHHhCCCCEEEE-------eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecC---
Confidence 5555555543 32222111 22668888774211 25678888888 99998764
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+|+++ ..+++|+++++++|+++++++++
T Consensus 402 ---------~~~~rl~~--~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 402 ---------YEAWFLTT--EHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp ---------TCCEECCT--TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCcEEEec--ccCHHHHHHHHHHHHHHHHHHHh
Confidence 35688864 47999999999999999987754
No 215
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.93 E-value=2.3e-24 Score=212.65 Aligned_cols=316 Identities=14% Similarity=0.129 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+..++.+.+++.+.+.... +.+ ...+...++++.++++++ .. ++|+|++|+++|+..++.+.+ .+.+
T Consensus 71 G~~~~~v~~a~~~~~~~~~---~~~------~~~~~~~~l~~~la~~~~-~~-~~v~~~~sgseA~~~al~~ar--~~~~ 137 (434)
T 2epj_A 71 GHKHPRVLEAVEEALARGW---LYG------APGEAEVLLAEKILGYVK-RG-GMIRFVNSGTEATMTAIRLAR--GYTG 137 (434)
T ss_dssp CBTCHHHHHHHHHHHHTCS---CCS------SCCHHHHHHHHHHHHHHC-TT-CEEEEESSHHHHHHHHHHHHH--HHHC
T ss_pred CCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence 4468999999999887521 111 023455678899999985 33 389999999999999998721 0235
Q ss_pred CCEEEEcCCCCccchHHHHHHH----------HHcCC------eEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVA----------QKTGA------NLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHI 217 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a----------~~~g~------~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~ 217 (458)
+++|++.+++|++......... ...|+ ++..++.. |++++++.+++ ++++|+++.+
T Consensus 138 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~ 212 (434)
T 2epj_A 138 RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYGDRIAGVIVEPV 212 (434)
T ss_dssp CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSS
T ss_pred CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCCCCEEEEEEeCC
Confidence 6789999999987543211000 01132 35556542 89999998873 6788999888
Q ss_pred cCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcc--c---CCCCCCCCcEEEecccCCCCC-CceeEEEEecccc
Q 012718 218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM--V---VDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~--~---~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~ 287 (458)
++++|.+.| +++|.++|++||+++|+|++|+ |.. . .+.....+|++ |++|.+|+ ..+|+++++++++
T Consensus 213 ~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~ 289 (434)
T 2epj_A 213 IANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVM 289 (434)
T ss_dssp BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHH
T ss_pred cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHH
Confidence 889999998 9999999999999999999998 221 0 01112347765 67897765 2389999999887
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC---
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP--- 364 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~--- 364 (458)
+.+.+... . ......+.+...++++.++++.+.+ +.+.++++++.+++.+.|+++.
T Consensus 290 ~~l~~~~~--~----------------~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 348 (434)
T 2epj_A 290 SLLTPQGK--V----------------FNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRT 348 (434)
T ss_dssp TTBTTTSS--B----------------CCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCC--c----------------ccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 76653110 0 0011124666677777788887765 3456677777777777776531
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCC--------------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENI--------------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
++....+ ..+.++++.+++. ...++.+.|.++ ||.+.++. ...+|++
T Consensus 349 ~~~~~~~------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~~~~~ 409 (434)
T 2epj_A 349 GLPYTIN------RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSN------------LEAVFTG 409 (434)
T ss_dssp TCCEEEE------EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST------------TSCEECC
T ss_pred CCcEEEE------EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccC------------CCcEEEe
Confidence 2211111 2267888888641 245788888888 99998764 2245554
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..++++|+++++++|+++++++.
T Consensus 410 --~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 410 --LPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp --TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHHHHHHHHHHh
Confidence 55899999999999999988753
No 216
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.92 E-value=8e-23 Score=203.38 Aligned_cols=342 Identities=12% Similarity=0.092 Sum_probs=227.9
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+.+....... ....+...++.+.++++++...+ .|+|++||++
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGse 125 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW------YMATSPAARLAEKIATLTPGDLN-RIFFTTGGST 125 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT------TCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC------ccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHH
Confidence 344666432 4556899999999998764321110 11244566788899999876554 9999999999
Q ss_pred HHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHH------c---CCeEEEEeCCCC--C-CCC-------
Q 012718 141 AINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQK------T---GANLKFLNLNDD--E-SPD------- 197 (458)
Q Consensus 141 a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~------~---g~~~~~v~~~~~--~-~~d------- 197 (458)
|+..++..+... .-..+++|++.++.|++.......+... . ...+..++.... . ..|
T Consensus 126 A~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 205 (476)
T 3i5t_A 126 AVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDD 205 (476)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHH
Confidence 999999887310 0034679999999999876443322100 0 012334442211 1 112
Q ss_pred -HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCC-CCCCCCc
Q 012718 198 -LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVD-VQGLDAD 262 (458)
Q Consensus 198 -~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~-~~~~~~d 262 (458)
+++|++.++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|. +|.. ... .....+|
T Consensus 206 ~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd 285 (476)
T 3i5t_A 206 LVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD 285 (476)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcc
Confidence 778888886 46789999999999998666 9999999999999999999997 4322 112 2234588
Q ss_pred EEEecccCCCCC--CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh
Q 012718 263 FLVASSHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 263 ~~~~s~~K~~gp--~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
+++ ++|.+|. -.+|++++++++++.+.+....+... ......+.+....++..++++.+.+
T Consensus 286 i~t--~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~--------------~~~~t~~~np~a~aAa~aaL~~~~~- 348 (476)
T 3i5t_A 286 IIT--FAKGVTSGYVPLGGLAISEAVLARISGENAKGSWF--------------TNGYTYSNQPVACAAALANIELMER- 348 (476)
T ss_dssp EEE--ECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEE--------------CCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred hhh--hhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccc--------------cccCCCCcCHHHHHHHHHHHHHHHh-
Confidence 876 5695543 34899999998887776421000000 0001224566667777777877765
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhhcCe
Q 012718 341 GMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQYGV 405 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~~gi 405 (458)
+.+.++.+++.+++.+.|+.+ +.+..... .+.++.+.+.... ..++.+.+.++ ||
T Consensus 349 --~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-------~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv 418 (476)
T 3i5t_A 349 --EGIVDQAREMADYFAAALASLRDLPGVAETRS-------VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GL 418 (476)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-------ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-------cCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CC
Confidence 346667777777777777654 34433222 2667788775421 45678888888 99
Q ss_pred EeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 406 ~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+++. .+++||++++..+++|+++++++|+++++++.
T Consensus 419 ~v~~~-------------g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 419 IVRPL-------------GDLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp ECEEE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98762 26899999988999999999999999998754
No 217
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.92 E-value=4.2e-24 Score=207.16 Aligned_cols=259 Identities=16% Similarity=0.131 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHcCCCCCCcEEE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHHH------HHHHHcCC
Q 012718 113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQ------LVAQKTGA 183 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~------~~a~~~g~ 183 (458)
.+.+++.+|+++|.+. .+++ ++||++|+..++.++ +++||+|+++. +.|.+....+. ..++..|+
T Consensus 61 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~al----l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~ 134 (409)
T 3jzl_A 61 RDTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGI----LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI 134 (409)
T ss_dssp HHHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHH----CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC
T ss_pred HHHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHh----cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC
Confidence 6678899999999873 4444 899999999999988 78999999998 88886542221 23456799
Q ss_pred eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEec----ccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccCCCC
Q 012718 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQ 257 (458)
Q Consensus 184 ~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~ 257 (458)
+++.++.++++.+|++++++++++++++|++++ ++||+|.+.|+++|+++|++ +|+++++|++|+.+....+..
T Consensus 135 ~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~ 214 (409)
T 3jzl_A 135 GYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP 214 (409)
T ss_dssp EEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG
T ss_pred EEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCcc
Confidence 999999988899999999999999999999999 99999999999999999999 999999999999776333344
Q ss_pred CCCCcEEEecccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI 334 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 334 (458)
..++|++++|+||++|+.| .|+++.++++++.+.......+ .....+... ....+ ++
T Consensus 215 ~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~----------------~g~~~g~~~-~~~~~---~l 274 (409)
T 3jzl_A 215 EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPG----------------IGREAGASL-YSLLE---MY 274 (409)
T ss_dssp GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTT----------------TGGGCCCCT-TCHHH---HH
T ss_pred ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccc----------------ccccccccH-HHHHH---HH
Confidence 5679999999999877654 5999999888776653211000 001111111 11122 23
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhh
Q 012718 335 DYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQ 402 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 402 (458)
+.+.. +....++..+++.++.+.|+++ ++++... +. +.++.-+++|.+.+. ....+++.|...
T Consensus 275 ~gl~~--~~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~-~~~~~~i~~i~l~~~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 275 QGFFL--APHVTAQAIKGARFTAAMLAEF-GVEADPV-WD-APRTDLIQSVSFHNKEKMVAFAQAIQAA 338 (409)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TT-SCCSSSCCEEECSCHHHHHHHHHHHHHT
T ss_pred HHHhh--HHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CC-CCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 33332 3455667788899999999988 6677433 21 122333788888631 234566677655
No 218
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.92 E-value=2.4e-23 Score=206.51 Aligned_cols=315 Identities=14% Similarity=0.061 Sum_probs=201.6
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+..++.+.+++.+.+.... +.+ ...+..+++.+.+++.++ .. ++|+|++|+++|+..++.+.+ .+.+
T Consensus 72 g~~~~~v~~a~~~~~~~~~---~~~------~~~~~~~~la~~l~~~~~-~~-~~v~~~~gg~eA~~~al~~ar--~~~~ 138 (453)
T 2cy8_A 72 GHGHPRVNAAIAEALSHGV---QYA------ASHPLEVRWAERIVAAFP-SI-RKLRFTGSGTETTLLALRVAR--AFTG 138 (453)
T ss_dssp CBTCHHHHHHHHHHHTTTC---SSC------SSCHHHHHHHHHHHHHCT-TC-SEEEEESCHHHHHHHHHHHHH--HHHC
T ss_pred CCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHhhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence 3478999999998876421 111 123455667777888776 33 489999999999999998721 0124
Q ss_pred CCEEEEcCCCCccchHHHHHHH-------HHcCC------eEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecccCc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVA-------QKTGA------NLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNM 220 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a-------~~~g~------~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~ 220 (458)
+++|++.+++|++......... ...|+ .+..++. .|++++++.++ +++++|+++.++|+
T Consensus 139 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~ 213 (453)
T 2cy8_A 139 RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSH 213 (453)
T ss_dssp CCEEEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHH
T ss_pred CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence 5688899999986544322211 01233 2344443 28999999887 46788888888888
Q ss_pred Cccccc----HHHHHHHHHhcCcEEEEeccccCCccc-----CCCCCCCCcEEEecccCCCCC-CceeEEEEeccccccC
Q 012718 221 LASILP----IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAM 290 (458)
Q Consensus 221 tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l 290 (458)
+|.+.| +++|.++|++||+++|+|++|+ |... .+.....+|++ |++|.+++ ..+|++++++++++.+
T Consensus 214 tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l 290 (453)
T 2cy8_A 214 FGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVL 290 (453)
T ss_dssp HHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTS
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHh
Confidence 999887 9999999999999999999998 3210 11112346765 67897664 3499999999887776
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHhcC----CC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LSTIGMQKIHAYEMELAKYLYENLLSI----PN 365 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~ 365 (458)
.+...+... .....+.+....+++.++++. + . +.+.++++++.+++.+.|+++ +.
T Consensus 291 ~~~~~~~~~----------------~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 350 (453)
T 2cy8_A 291 SRGSDRKVL----------------HQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFARKGL 350 (453)
T ss_dssp SSCC-------------------------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCce----------------eCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 541100000 011224566666777777776 5 3 345667777777777777553 22
Q ss_pred EEEeCCCCCCcCccccEEEEEeCC-----C------------C---hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVEN-----I------------H---PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~-----~------------~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
...... .+.++++.++. . + ..++.+.|.++ ||.+.++ +
T Consensus 351 ~~~~~~-------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~--------------~ 408 (453)
T 2cy8_A 351 NWLAYG-------RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGGR--------------G 408 (453)
T ss_dssp CEEEEC-------CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBTT--------------T
T ss_pred cEEEEE-------eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeCC--------------C
Confidence 221111 26788898874 1 1 45788888887 9998532 2
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+|++ ...+++|+++++++|+++++++.+
T Consensus 409 ~~~l~--~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 409 SVFLS--AQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp EEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEee--ccCCHHHHHHHHHHHHHHHHHHHh
Confidence 35654 558999999999999999887643
No 219
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.92 E-value=9.6e-24 Score=207.86 Aligned_cols=323 Identities=15% Similarity=0.075 Sum_probs=214.1
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|..++.+.+++.+.+.+...+ + + ......++++.++++++ .. ++++|++||+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~l~~~la~~~~-~~-~~v~~~~~Gs 119 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF---G-A-----PTEIENKLAKLVIERVP-SI-EIVRMVNSGT 119 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC---S-S-----CCHHHHHHHHHHHHHST-TC-SEEEEESSHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc---C-C-----CCHHHHHHHHHHHHhCC-CC-CEEEEeCChH
Confidence 3445676553 2346899999999988763211 1 0 12445578889999986 33 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-------------------eEEEEeCCCCCCCCHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-------------------NLKFLNLNDDESPDLDK 200 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-------------------~~~~v~~~~~~~~d~~~ 200 (458)
+|+..++..+. ...++++|++.+++|++....... ..|. .+..++.+ |+++
T Consensus 120 ea~~~ai~~a~--~~~~~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 189 (429)
T 3k28_A 120 EATMSALRLAR--GYTGRNKILKFIGCYHGHGDSLLI---KAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLES 189 (429)
T ss_dssp HHHHHHHHHHH--HHHTCCEEEEEETCCCCSCGGGCS---SCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHH
T ss_pred HHHHHHHHHHH--HhhCCCEEEEECCCcCCCcHHHHH---hcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHH
Confidence 99999998762 123678999999999865422110 0111 23333332 8899
Q ss_pred HHHhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCC---cc-cCCCCCCCCcEEEeccc
Q 012718 201 LKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVP---HM-VVDVQGLDADFLVASSH 269 (458)
Q Consensus 201 l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g---~~-~~~~~~~~~d~~~~s~~ 269 (458)
+++.++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|..- .. ..+.....+|+++ ++
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t--~s 267 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTC--LG 267 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEE--EC
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceeh--hh
Confidence 999886 46788999999999999998 999999999999999999999621 10 0111123467654 77
Q ss_pred CCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 012718 270 KMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348 (458)
Q Consensus 270 K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 348 (458)
|.+|+ ..+|++++++++++.+.+..... .....+.+....++..++++.. . ++..++
T Consensus 268 K~~~~G~~iG~~~~~~~~~~~~~~~~~~~------------------~~~t~~~~~~a~aaa~aal~~~---~-~~~~~~ 325 (429)
T 3k28_A 268 KVIGGGLPVGAYGGKAEIMRQVAPSGPIY------------------QAGTLSGNPLAMAAGYETLVQL---T-PESYVE 325 (429)
T ss_dssp GGGGTTSCCEEEEECHHHHTTBTTTSSBC------------------CCCTTTTCHHHHHHHHHHHHTC---C-HHHHHH
T ss_pred hhhcCCCCeEEEEEcHHHHhhhccCCCcc------------------ccCCCCCChHHHHHHHHHHHHH---H-HHHHHH
Confidence 96653 34999999998877765321000 0012244555555555555533 2 566777
Q ss_pred HHHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCCC--------------hHHHHHHHhhhcCeEeccC
Q 012718 349 EMELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENIH--------------PTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~l~~~~gi~~~~g 410 (458)
++++.+++.+.|.++ +..... ...+.++++.+.... ..++.+.|.++ ||.++++
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~ 397 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHI-------NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPS 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEE-------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEE-------EeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecC
Confidence 777777777777653 222111 122667778764211 25788888888 9999876
Q ss_pred CCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 411 ~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
. .+.+|+++ ..+++|+++++++|++++++++
T Consensus 398 ~------------~~~~r~~~--~~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 398 Q------------FEGLFLST--VHSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp T------------TSCBCCCT--TCCHHHHHHHHHHHHHHHHTCC
T ss_pred C------------CCCEEEEC--CCCHHHHHHHHHHHHHHHHHHh
Confidence 4 45678865 4799999999999999998764
No 220
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.91 E-value=1.1e-22 Score=202.13 Aligned_cols=334 Identities=14% Similarity=0.151 Sum_probs=214.5
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHh-ccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~ 138 (458)
++..|+|..+ .|..++.+.+++.+.+... ..+.. ........+..+.+.+.|+++++...+ .|+|++||
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~la~~l~~~~~~~~~-~v~f~~sG 136 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRP---ALGILPPENFVEKLRESLLSVAPKGMS-QLITMACG 136 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCC---CTTTSCBTTHHHHHHHTGGGGCCTTCC-EEEEESSH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccc---ccccccHHHHHHHHHHHHHHhCCCCcC-EEEEeCCc
Confidence 3445777532 3556888999998865332 11110 000011123333444445556544443 89999999
Q ss_pred hHHHHHHHHHcCCC------C---C------------CCC---CEEEEcCCCCccchHHHHHHH-----HHcCCeE---E
Q 012718 139 TEAINLVAYSWGLS------N---L------------KSG---DEVILTVAEHHSAIVPWQLVA-----QKTGANL---K 186 (458)
Q Consensus 139 t~a~~~~~~~l~~~------~---~------------~~g---~~vl~~~~~~~s~~~~~~~~a-----~~~g~~~---~ 186 (458)
++|+..++..+... . . ++| ++|++.++.||+.......+. +..|... .
T Consensus 137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (472)
T 1ohv_A 137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP 216 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCc
Confidence 99999999876210 0 0 134 899999999998776544331 1112211 1
Q ss_pred EEeCCCC-C-------------CCCHHHHHHhhcC------CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEE
Q 012718 187 FLNLNDD-E-------------SPDLDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVL 242 (458)
Q Consensus 187 ~v~~~~~-~-------------~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vi 242 (458)
.+++... . ..|+++|++.+++ ++++|+++.++|++|.+.| +++|.++|++||+++|
T Consensus 217 ~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli 296 (472)
T 1ohv_A 217 IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFL 296 (472)
T ss_dssp EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred ccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 2232210 0 1267889988876 7899999999999999887 9999999999999999
Q ss_pred Eecccc-CCccc--CCCCCCC----CcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCC
Q 012718 243 VDACQS-VPHMV--VDVQGLD----ADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPP 314 (458)
Q Consensus 243 vD~a~~-~g~~~--~~~~~~~----~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 314 (458)
+|++|. +|... +....++ +|++ +++|. +| | |+++ ++++ ..+.+...
T Consensus 297 ~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~--G-G~~~-~~~~-~~~~~~~~------------------- 350 (472)
T 1ohv_A 297 VDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT--G-GFFH-KEEF-RPNAPYRI------------------- 350 (472)
T ss_dssp EECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS--E-EEEE-CGGG-SCSSSSSS-------------------
T ss_pred EeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc--C-CccC-chhh-cccccccc-------------------
Confidence 999998 44331 2333333 7776 56797 44 2 6665 5543 22221111
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CC-EEEeCCCCCCcCccccEEEEEeCC
Q 012718 315 SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PN-IRIYGPKPSEHVQRAALCSFNVEN 389 (458)
Q Consensus 315 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~-~~~~~~~~~~~~~~~~~v~~~~~~ 389 (458)
+...+.+...++++.++++.+.+. .+.++++++.++|.+.|+++ ++ +.... ..+.++++.+++
T Consensus 351 --~~T~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~-------~~g~~~~~~~~~ 418 (472)
T 1ohv_A 351 --FNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-------GRGTFCSFDTPD 418 (472)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-------EETTEEEEECSS
T ss_pred --cCccCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeec-------CCceEEEEEeCC
Confidence 112235666777777888887663 35677777788887777654 32 32111 126688887753
Q ss_pred -CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 390 -IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 390 -~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
....++.+.|.++ ||.+.++. .+.||+++++.++++||++++++|+++++++
T Consensus 419 ~~~~~~~~~~l~~~-Gv~~~~~g------------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 419 ESIRNKLISIARNK-GVMLGGCG------------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHHT-TEECEEET------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHC-CeEEecCC------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1346788888887 99987642 5689999999999999999999999998764
No 221
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.91 E-value=6.4e-24 Score=206.23 Aligned_cols=332 Identities=14% Similarity=0.021 Sum_probs=213.7
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCCC-C--cEEEeCChhHHHHHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASDS-G--EIVFTKNATEAINLV 145 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~~-~--~v~~t~g~t~a~~~~ 145 (458)
|.|..+..+.++.|.+|.....+.... + +|....+..++|+++++++ |.... . ..+.|.|+|.|+..+
T Consensus 54 y~d~~g~~~vl~~Vk~A~~~~~~~~~~--~------~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a 125 (420)
T 4h51_A 54 YRDEQGRPYPLRVVRKAEQLLLDMNLD--Y------EYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLG 125 (420)
T ss_dssp CBCTTSCBCCCHHHHHHHHHHHHTTCC--C------CCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCC--C------CCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHH
Confidence 444445557778898888776654211 1 0112344557888888875 32211 1 235588999999988
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-EEEEeCC--CCCCCCHHHHHHhhc---CCceEEEEecccC
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLN--DDESPDLDKLKEMLS---RKTKLVVIHHISN 219 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-~~~v~~~--~~~~~d~~~l~~~l~---~~~~~v~~~~~~n 219 (458)
+..+.....++||+|++++|+|+. +..+.+..|.+ +...+.. .+..+|.+.+.+.+. +++++++++.++|
T Consensus 126 ~~~l~~~~~~pgd~V~ip~P~w~~----y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~N 201 (420)
T 4h51_A 126 AKLLTRVFDAETTPIYLSDPTWPN----HYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHN 201 (420)
T ss_dssp HHHHTTTSCTTTSCEEEEESCCTH----HHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCT
T ss_pred HHHHHHhcCCCCCEEEEecCCchh----HHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCC
Confidence 887754456899999999999994 45556667886 4444433 235568887777653 5678889999999
Q ss_pred cCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC-------CCCCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 220 MLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD-------VQGLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 220 ~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~-------~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
|||..++ +++|+++|+++++++++|++|..-.. ..+ .+.....+++.|+||.|+.+| +|++++..
T Consensus 202 PtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~ 281 (420)
T 4h51_A 202 PTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLL 281 (420)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecc
Confidence 9999999 77899999999999999999863211 000 112235678889999999888 99999987
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH------HHHHhCHHHHHHHHHHHHHHHHH
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~~~~~~~~l~~~l~~ 358 (458)
+..+........-.. ..+...+.++..+.......+. .+.. .++.++++++++++.|.+
T Consensus 282 ~~~~~~~~~~~~l~~--------------~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~-~~~~m~~r~~~~R~~l~~ 346 (420)
T 4h51_A 282 KDKTKRADVKSVMDS--------------LIREEYTCPPAHGARLAHLILSNNELRKEWEA-ELSAMAERIRTMRRTVYD 346 (420)
T ss_dssp SCHHHHHHHHHHHHH--------------HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--------------hhhcccCcchHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 655433211110000 0011233455555554444443 1111 267788899999999999
Q ss_pred HHhcCC--C-EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 359 NLLSIP--N-IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 359 ~L~~~~--~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.|++.. + +....+. .|.|.+. +.+.+ .++.|++. ||++.++ -|||+.. .
T Consensus 347 ~L~~~g~~~~~~~i~~q------~GmF~~~---gls~e-~v~~L~e~-~Vy~~~~----------------gRis~Ag-l 398 (420)
T 4h51_A 347 ELLRLQTPGSWEHVINQ------IGMFSFL---GLSKA-QCEYCQNH-NIFITVS----------------GRANMAG-L 398 (420)
T ss_dssp HHHHTTCSSCCTHHHHC------CSSEEEC---CCCHH-HHHHHHHT-TEECCTT----------------CEEEGGG-C
T ss_pred HHHHhCCCCCCCeecCC------CceEEec---CcCHH-HHHHHHhC-CEEEcCC----------------CEEEecc-C
Confidence 998761 1 2111122 2434433 44444 45778766 9988643 1999875 6
Q ss_pred CHHHHHHHHHHHHHHHHhhhc
Q 012718 436 TKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~~ 456 (458)
+++.|++++++|.++++++.+
T Consensus 399 ~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 399 THETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999998765
No 222
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.91 E-value=1.5e-23 Score=203.95 Aligned_cols=257 Identities=17% Similarity=0.149 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHcCCCCCCcEEE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHH-------HHHHHHcC
Q 012718 113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPW-------QLVAQKTG 182 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~-------~~~a~~~g 182 (458)
.+.+++.+|+++|++. .+++ ++||++|+..++.++ +++||+|++++ +.|.+....+ ...++..|
T Consensus 75 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~al----l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G 148 (427)
T 3i16_A 75 RDSLDAVYARVFNTES--ALVRPHFVNGTHALGAALFGN----LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG 148 (427)
T ss_dssp HHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHH----CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT
T ss_pred HHHHHHHHHHHhCCcc--eEEeCCCccHHHHHHHHHHHH----hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC
Confidence 6678899999999873 4454 899999999999988 78999999999 8898664332 03345569
Q ss_pred CeEEEEeCCCCCCCCHHHHHHhhc--CCceEEEEec----ccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccC
Q 012718 183 ANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 183 ~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~ 254 (458)
++++.++.+++|.+|+++++++++ +++++|++++ ++||+|.+.|+++|+++|++ +|+++++|++|+.+....
T Consensus 149 ~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~ 228 (427)
T 3i16_A 149 INYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK 228 (427)
T ss_dssp CEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS
T ss_pred CEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence 999999998889899999999998 7899999999 99999999999999999999 999999999999776323
Q ss_pred CCCCCCCcEEEecccCCCCCCc---eeEEEEeccccccCCCcc--ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHH
Q 012718 255 DVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIG 329 (458)
Q Consensus 255 ~~~~~~~d~~~~s~~K~~gp~g---~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 329 (458)
.....++|++++|+||.+|++| .|+++.++++++.+.... .+.+. .. .+... +
T Consensus 229 ~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~------------------~~-~~~~~---~ 286 (427)
T 3i16_A 229 EPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGG------------------EC-GSTFG---V 286 (427)
T ss_dssp CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGG------------------GC-CCCTT---C
T ss_pred CccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCc------------------cC-CccHH---H
Confidence 3334678999999999887643 699999998887765421 11110 01 11111 1
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhh
Q 012718 330 LGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQ 402 (458)
Q Consensus 330 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 402 (458)
...+++-+.. +....++..+++.++.+.|+++ ++++... +. +.++.-++.|.+.+. ....+++.|...
T Consensus 287 a~~~l~gl~~--~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~-~~~~~~i~~i~l~~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 287 VRSMYQGLFL--APHISMEALKGAILCSRIMELA-GFEVMPK-YD-EKRSDIIQSIKFNDKDKLIEFCKGIQTG 355 (427)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TT-SCCSSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CC-CCCccEEEEEEECCHHHHHHHHHHHhhc
Confidence 1222333333 3456677788889999999988 6677433 21 122333888888631 234566666654
No 223
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.91 E-value=1.9e-22 Score=198.60 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=209.6
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++..|+|..+. |..++.+.+++.+.+.+...+ + + ..+...++.+.++++++ .. ++++|++||+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~la~~l~~~~~-~~-~~v~~~~sGs 119 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF---G-A-----PTEMEVKMAQLVTDLVP-TM-DMVRMVNSGT 119 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---S-S-----CCHHHHHHHHHHHHHST-TC-SEEEEESSHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc---C-C-----CCHHHHHHHHHHHhhCC-CC-CEEEEeCcHH
Confidence 34456765432 235899999999987653211 1 0 12455678899999987 33 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-----------------eEEEEeCCCCCCCCHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------------NLKFLNLNDDESPDLDKLK 202 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-----------------~~~~v~~~~~~~~d~~~l~ 202 (458)
+|++.++.... ...++++|++.++.||+.......... .+. .+..++.. |+++|+
T Consensus 120 ea~~~al~~a~--~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le 191 (429)
T 4e77_A 120 EATMSAIRLAR--GYTGRDKIIKFEGCYHGHADCLLVKAG-SGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVR 191 (429)
T ss_dssp HHHHHHHHHHH--HHHCCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEECTT-----CHHHHH
T ss_pred HHHHHHHHHHH--HhhCCCEEEEEcCccCCCChhhhhhcC-CcccccCCCCcCCCCCccCCceeecCCC-----CHHHHH
Confidence 99999998542 123567899999999976542211100 011 12222221 889999
Q ss_pred Hhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc---CCcc-cCCCCCCCCcEEEecccCC
Q 012718 203 EMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 203 ~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~ 271 (458)
+.++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|+ .|.. ..+.....+|++ |++|.
T Consensus 192 ~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~ 269 (429)
T 4e77_A 192 QAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKI 269 (429)
T ss_dssp HHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGG
T ss_pred HHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eeccc
Confidence 9886 36788888888888888888 9999999999999999999998 2221 011122346765 67796
Q ss_pred CCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 012718 272 CGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350 (458)
Q Consensus 272 ~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~ 350 (458)
+|+ ..+|++++++++++.+.+.... ......+.+....+++.++++.+.+ +.+.++++
T Consensus 270 ~~~G~~~G~~~~~~~~~~~l~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~ 328 (429)
T 4e77_A 270 IGGGMPVGAFGGRREVMNALAPTGPV------------------YQAGTLSGNPIAMAAGFACLTEISQ---VGVYETLT 328 (429)
T ss_dssp GGTTSCCEEEEECHHHHTTBTTTSSB------------------CC--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHH
T ss_pred ccCCCCeEEEEECHHHHHHhccCCCc------------------cccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHH
Confidence 653 3489999999887776542100 0011235677777777778877643 34455555
Q ss_pred HHHHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCCCC---------------hHHHHHHHhhhcCeEeccCC
Q 012718 351 ELAKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVENIH---------------PTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 351 ~l~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~l~~~~gi~~~~g~ 411 (458)
++.+++.+.|.+ .+..... ...+.++++.+++.. ..++.+.|.++ ||.++++.
T Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~ 400 (429)
T 4e77_A 329 ELTDSLATGLRHAAKEENIPLVV-------NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA 400 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEE-------EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST
T ss_pred HHHHHHHHHHHHHHHhCCCceEE-------EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC
Confidence 555555555543 3211111 123668888886531 16788889888 99998764
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
...+|++ ...+++|+++++++|++++++
T Consensus 401 ------------~~~~~~~--~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 401 ------------FEAGFMS--LAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ------------TSCEECC--TTCCHHHHHHHHHHHHHHHTT
T ss_pred ------------CCCEEEe--ccCCHHHHHHHHHHHHHHHHh
Confidence 2345554 558999999999999998864
No 224
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.91 E-value=3e-23 Score=204.08 Aligned_cols=312 Identities=15% Similarity=0.113 Sum_probs=208.7
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+..++.+.+++.+.+.... +.+ ...+..+++.+.++++++ .. ++|++++|+++|+..++...+ .+.+
T Consensus 67 G~~~p~v~~a~~~~~~~~~---~~~------~~~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~ea~~~al~~ar--~~~~ 133 (424)
T 2e7u_A 67 GHAHPKVLARVRETLERGL---TFG------APSPLEVALAKKVKRAYP-FV-DLVRFVNSGTEATMSALRLAR--GYTG 133 (424)
T ss_dssp CBTCHHHHHHHHHHHHTCS---CCS------SCCHHHHHHHHHHHHHCT-TC-CEEEEESSHHHHHHHHHHHHH--HHHC
T ss_pred CCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence 4578999999999887521 111 123455678899999986 33 399999999999999988511 0235
Q ss_pred CCEEEEcCCCCccchHHHHHHH----------HHcC------CeEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVA----------QKTG------ANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHI 217 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a----------~~~g------~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~ 217 (458)
+++|++.+++|++........+ ...| .++..++.. |++++++.++ +++++|+++..
T Consensus 134 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~ 208 (424)
T 2e7u_A 134 RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN-----DPEGLREVLKRRGEEIAAIIFEPV 208 (424)
T ss_dssp CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSS
T ss_pred CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----CHHHHHHHHHhCCCCEEEEEEeCC
Confidence 6789999999987532211100 0012 234555542 8999999886 46778888777
Q ss_pred cCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcc--c---CCCCCCCCcEEEecccCCCCC-CceeEEEEecccc
Q 012718 218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM--V---VDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~--~---~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~ 287 (458)
++++|.+.| +++|.++ ++||+++|+|++|+ |.. . .+.....+|++ |++|.+|+ -.+|+++++++++
T Consensus 209 ~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~ 284 (424)
T 2e7u_A 209 VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIM 284 (424)
T ss_dssp BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHH
Confidence 777999887 9999999 99999999999998 221 0 01112346765 78897764 2389999999887
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---C
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI---P 364 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~---~ 364 (458)
+.+.+... . ......+.+....++..++++.+.+ .+.+.++++++.+++.+.|+++ .
T Consensus 285 ~~~~~~~~--~----------------~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (424)
T 2e7u_A 285 EKVAPLGP--V----------------YQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEK 344 (424)
T ss_dssp TTBTTTSS--B----------------CCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccCC--c----------------ccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76654110 0 0011224566667777778887755 2567788888888888887654 1
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCC--------------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENI--------------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
++....+ ..+.++++.++.. ...++.+.|.++ ||.+.++. ...+|++
T Consensus 345 ~~~~~~~------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~~~~~ 405 (424)
T 2e7u_A 345 GLPHTVN------RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDR-GIYWPPSN------------FEAAFLS 405 (424)
T ss_dssp TCCCEEE------EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTT-TEECCSSS------------SSCEECC
T ss_pred CCceEEE------eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHC-CeEEeccC------------CCceEee
Confidence 2211001 2266888888641 134688888887 99998764 2245655
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q 012718 431 LHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+++|+++++++|++++
T Consensus 406 --~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 406 --VAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp --TTCCHHHHHHHHHHHHHHC
T ss_pred --ccCCHHHHHHHHHHHHHhC
Confidence 5589999999999998763
No 225
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.91 E-value=9.6e-23 Score=200.62 Aligned_cols=313 Identities=19% Similarity=0.156 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG 157 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g 157 (458)
..++.+.+++.+.+.....+ + + ..+...++.+.++++++ .. ++|+|++|+++|+..++.... ...++
T Consensus 68 ~~~p~v~~a~~~~~~~~~~~---~-----~-~~~~~~~la~~l~~~~~-~~-~~v~~~~ggsea~~~al~~a~--~~~~~ 134 (427)
T 3fq8_A 68 HAHPEVIEALKVAMEKGTSF---G-----A-PCALENVLAEMVNDAVP-SI-EMVRFVNSGTEACMAVLRIMR--AYTGR 134 (427)
T ss_dssp BTCHHHHHHHHHHHTTCSCC---S-----S-CCHHHHHHHHHHHHHST-TC-SEEEEESSHHHHHHHHHHHHH--HHHCC
T ss_pred CCCHHHHHHHHHHHHhCCCc---C-----C-CCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhCC
Confidence 35899999999887653111 1 1 24556678899999987 43 499999999999999995431 12345
Q ss_pred CEEEEcCCCCccchHHHHHH----HHHc------------CCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEeccc
Q 012718 158 DEVILTVAEHHSAIVPWQLV----AQKT------------GANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHIS 218 (458)
Q Consensus 158 ~~vl~~~~~~~s~~~~~~~~----a~~~------------g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~ 218 (458)
++|++.+++|++........ .... +..+..++.+ |++++++.+++ ++++|+++.++
T Consensus 135 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~ 209 (427)
T 3fq8_A 135 DKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIV 209 (427)
T ss_dssp CEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSB
T ss_pred CEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCc
Confidence 78999999998643211100 0000 1124444443 89999999875 67999999999
Q ss_pred CcCccccc----HHHHHHHHHhcCcEEEEecccc---CCcc-cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccc
Q 012718 219 NMLASILP----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLS 288 (458)
Q Consensus 219 n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~ 288 (458)
+++|.+.+ +++|.++|++||+++|+|++|+ .|.. ..+.....+|++ |++|.+++ | +|++++++++++
T Consensus 210 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~~G~~~~~~~~~~ 286 (427)
T 3fq8_A 210 GNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLT--TLGKIIGG-GLPVGAYGGKREIMQ 286 (427)
T ss_dssp CTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEE--EECGGGGT-TSSCEEEEECHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChh--hhhhhhhC-CcceEEEEEcHHHHH
Confidence 99999999 9999999999999999999998 1111 111223346765 56697763 5 999999998877
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC---C
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP---N 365 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~---~ 365 (458)
.+.+..... .....+.+....++..++++.+.+ +.+.++++++.+++.+.|.++. +
T Consensus 287 ~~~~~~~~~------------------~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (427)
T 3fq8_A 287 LVAPAGPMY------------------QAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQETG 345 (427)
T ss_dssp TBTTTSSBC------------------CCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccCCCcc------------------ccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 766421000 001123466677777777776644 3445555566666655554320 1
Q ss_pred EEEeCCCCCCcCccccEEEEEeCCC--C------------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVENI--H------------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL 431 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~~--~------------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~ 431 (458)
+... . ...+.++++.+... . ..++.+.|.++ ||.++++. .. |+++
T Consensus 346 ~~~~--~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~------------~~--r~~~ 404 (427)
T 3fq8_A 346 HAAC--G----GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQ------------FE--AGFT 404 (427)
T ss_dssp CCCE--E----EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST------------TS--CEEC
T ss_pred CCeE--E----EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCC------------CC--CEEe
Confidence 1100 0 12366888887532 1 24788888888 99998764 12 5555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 012718 432 HFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 432 ~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+...+++|+++++++|++++++
T Consensus 405 ~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 405 SLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCcCCHHHHHHHHHHHHHHHHh
Confidence 6668999999999999999875
No 226
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.91 E-value=1.4e-22 Score=197.02 Aligned_cols=255 Identities=17% Similarity=0.150 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHcCCCCCCcEEE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHH-------HHHHHHcC
Q 012718 113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPW-------QLVAQKTG 182 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~-------~~~a~~~g 182 (458)
.+.+++.+|+++|.+. .+++ ++||++|+..++.++ +++||+|++++ +.|.+....+ ...++..|
T Consensus 76 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~al----l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G 149 (427)
T 3hvy_A 76 RDSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGN----LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG 149 (427)
T ss_dssp HHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHT----CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT
T ss_pred HHHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHh----cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC
Confidence 6778899999999873 3443 889999999999988 79999999999 8898664222 02345569
Q ss_pred CeEEEEeCCCCCCCCHHHHHHhhc--CCceEEEEec----ccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccC
Q 012718 183 ANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 183 ~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~ 254 (458)
++++.++. +++.+|+++++++++ +++++|++++ ++||||.+.|+++|+++|++ +|+++++|++|+.+....
T Consensus 150 ~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~ 228 (427)
T 3hvy_A 150 VKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK 228 (427)
T ss_dssp CEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS
T ss_pred CEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCC
Confidence 99999998 678899999999998 7899999999 99999999999999999999 899999999999776323
Q ss_pred CCCCCCCcEEEecccCCCCCCc---eeEEEEeccccccCCCcc--ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHH
Q 012718 255 DVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIG 329 (458)
Q Consensus 255 ~~~~~~~d~~~~s~~K~~gp~g---~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 329 (458)
.....++|++++|+||.+|++| .|+++.++++++.+.... .+.+ ...+ ++.....
T Consensus 229 ~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g------------------~~~~-~~~~~a~- 288 (427)
T 3hvy_A 229 EPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIG------------------GECG-STFGVMR- 288 (427)
T ss_dssp CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTG------------------GGCC-CCTTCHH-
T ss_pred CCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcc------------------cccC-CCHHHHH-
Confidence 3334578999999999877643 599999988877765321 1111 1111 1111112
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhh
Q 012718 330 LGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQ 401 (458)
Q Consensus 330 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~ 401 (458)
.+++-+.. .+...++..+++.++.+.|+++ ++++... +. +.++..+++|.+.+. ...++++.|..
T Consensus 289 --~~~~gl~~--~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~-~~~~~li~~~~l~~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 289 --SLYEGLFM--APHVTIEAVKGAVFCARIMELA-GFDVLPK-YN-DKRTDIIQAIKFNDEKKLIDFIKGIQT 354 (427)
T ss_dssp --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TT-SCCSSSEEEEECSSHHHHHHHHHHHHH
T ss_pred --HHHHhHhH--HHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CC-CCCceEEEEEeCCCHHHHHHHHHHhcc
Confidence 22232322 3456677788899999999988 6677433 21 122333888888631 12345555554
No 227
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.88 E-value=5.1e-21 Score=195.51 Aligned_cols=296 Identities=11% Similarity=0.087 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
.+.++++.+|+++|++. .+++++|++.|+..++.++ +++||+|+++.++|.|...+ +...|++++.++.+
T Consensus 196 ~i~eaE~~lA~~fGa~~--a~~v~nGts~An~~ai~al----~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~ 265 (715)
T 3n75_A 196 PHKEAEQYIARVFNADR--SYMVTNGTSTANKIVGMYS----APAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHH----CCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCC--ceEECcHHHHHHHHHHHHh----CCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecc
Confidence 46689999999999973 5566677789999999988 79999999999999987543 45679999999875
Q ss_pred CC-C----CC-----CHHHHHHhhcC--Cce---EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc--cC
Q 012718 192 DD-E----SP-----DLDKLKEMLSR--KTK---LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--VV 254 (458)
Q Consensus 192 ~~-~----~~-----d~~~l~~~l~~--~~~---~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~--~~ 254 (458)
.+ + .+ |++.+++++.+ +++ +++++++ |++|.+.|+++|.++|++++ +++|++|+.+.. +.
T Consensus 266 ~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (715)
T ss_dssp BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence 33 2 23 89999999974 334 8888888 99999999999999998774 799999986531 11
Q ss_pred --CCCC--C--CCcEE---EecccCC-CCCCceeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCC
Q 012718 255 --DVQG--L--DADFL---VASSHKM-CGPTGIGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPA 323 (458)
Q Consensus 255 --~~~~--~--~~d~~---~~s~~K~-~gp~g~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 323 (458)
+... . ++|++ +.|+||. .|+.+.|+++++++... .+.... ..+.+++++
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~--------------------~~~~STSps 402 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY--------------------MMHTTTSPH 402 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHH--------------------HHTSCSSCC
T ss_pred cccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHH--------------------HhhcCCCch
Confidence 1111 1 25765 8999995 55778999999876311 111100 124467899
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC------EEEeCCCCCCc-------------------C-
Q 012718 324 IGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN------IRIYGPKPSEH-------------------V- 377 (458)
Q Consensus 324 ~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~------~~~~~~~~~~~-------------------~- 377 (458)
+..++++.++++++....-.++.++..++++++++.|+++++ +++..+..... .
T Consensus 403 y~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~ 482 (715)
T 3n75_A 403 YGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNE 482 (715)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSS
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccC
Confidence 999999999999886422355778888999999998877643 45554331000 0
Q ss_pred --cccc-EEEEEeC-----------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 378 --QRAA-LCSFNVE-----------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 378 --~~~~-~v~~~~~-----------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
..-+ =+++..+ +++..++.+.|+++ ||.+.-.. ...+=+-+++..+.+++++|
T Consensus 483 ~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~-~I~~E~~d------------~~~vl~l~s~g~~~~~~~~L 549 (715)
T 3n75_A 483 HMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEH-GIVVEKTG------------PYNLLFLFSIGIDKTKALSL 549 (715)
T ss_dssp SEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHT-TCCCSEEE------------TTEEEEECCTTCCHHHHHHH
T ss_pred cccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHC-CCEEEecC------------CCcEEEEeCCCCCHHHHHHH
Confidence 0011 2344444 34567888999876 99874222 45666666766899999999
Q ss_pred HHHHHHHHHh
Q 012718 444 IHALNETVSF 453 (458)
Q Consensus 444 ~~~l~~~~~~ 453 (458)
+++|.++-+.
T Consensus 550 ~~aL~~~~~~ 559 (715)
T 3n75_A 550 LRALTDFKRA 559 (715)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 228
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.88 E-value=9.2e-22 Score=192.36 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHcCCCCCC-cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHHH------HHHHHcCC
Q 012718 112 EYELARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQ------LVAQKTGA 183 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~-~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~------~~a~~~g~ 183 (458)
..+++++.+++++|.+... ++++ +|||+|+..++.++ +++||+|+++. +.|.+....+. ..++..|+
T Consensus 66 ~~~~l~~~la~~~g~~~~~~~i~~-~sGt~Ai~~al~al----~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~ 140 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGLVRPQI-ISGTHAISTALFGI----LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI 140 (431)
T ss_dssp HHHHHHHHHHHHTTCSEECCBTTS-CSHHHHHHHHHHTT----CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC
T ss_pred hHHHHHHHHHHHhCCCccccccee-eCHHHHHHHHHHHh----CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC
Confidence 3677899999999987431 1224 47899999999887 78999999998 88886532221 22345699
Q ss_pred eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEec-ccCcCcc---cccHHHHHHHHHh--cCcEEEEeccccCCcccCCCC
Q 012718 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH-ISNMLAS---ILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQ 257 (458)
Q Consensus 184 ~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~-~~n~tG~---~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~ 257 (458)
+++.++.++++.+|++++++++++++++|++++ ++||+|. ..++++|+++|++ +|+++++|++|+.+....+..
T Consensus 141 ~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~ 220 (431)
T 3ht4_A 141 GYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC 220 (431)
T ss_dssp EEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred EEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence 999999988899999999999999999999996 5555555 4458899999999 999999999999876433444
Q ss_pred CCCCcEEEecccCCCC----CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~g----p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 333 (458)
..++|++++|++|.+| +.| |++++++++++.+.......+. ....+. +......+...
T Consensus 221 ~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~----------------g~~~~~-~~~~~~~~~~~ 282 (431)
T 3ht4_A 221 HVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGI----------------GAEAGA-SLYSLQEMYQG 282 (431)
T ss_dssp GTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTT----------------TTSCSC-CCSCSHHHHHH
T ss_pred ccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCc----------------ccccCc-cHHHHHHHHhH
Confidence 5578999999999643 455 9999998887766532211000 011111 11101112223
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhh
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQ 402 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 402 (458)
++. ++...++..++++++.+.|+++ ++++.... . ...+.-++.+.+.+. ...++++.|.+.
T Consensus 283 l~~-----~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~-~-~~~~~li~~i~l~~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 283 FFL-----APHVAGQALKGAIFTAAFLEKL-GMNTSPAW-N-APRTDLIQSVQFDDKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHHHHH-TCCEESCT-T-SCCSSSCCEEECCCHHHHHHHHHHHHHT
T ss_pred hhh-----HHHHHHHHHHHHHHHHHHHHhC-cCEecCCC-C-CCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 332 2455667778888888888887 66663322 1 123333778888631 234666777654
No 229
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.86 E-value=1.3e-20 Score=181.58 Aligned_cols=315 Identities=15% Similarity=0.128 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh-HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE
Q 012718 107 AKATDEYELARKKVAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185 (458)
Q Consensus 107 ~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t-~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~ 185 (458)
+......+.+...+.+++|.+.....++++|+| .++.+++.+.+ ....+++.|+++...|.|+ .+.+...|+.+
T Consensus 94 ~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar-~~~~~~~~viv~r~aHkSv----~kAl~l~Gl~p 168 (450)
T 3bc8_A 94 SLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR-HKRPKAKYIIWPRIDQKSC----FKSMVTAGFEP 168 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHH-HHCTTCCEEEEECCCCHHH----HHHHHHTTCEE
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcc-hhhcCCCEEEEECCcHHHH----HHHHHHcCCee
Confidence 345567777889999999998765678898888 44444444432 1122378999999999876 44455679999
Q ss_pred EEEeC---CCCCCCCHHHHHHhhcC----CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC-CC-
Q 012718 186 KFLNL---NDDESPDLDKLKEMLSR----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DV- 256 (458)
Q Consensus 186 ~~v~~---~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~-~~- 256 (458)
+.++. ++.+.+|++.|+++|++ .+.+|+.+..++.+|.+.|+++|+++||+||+++|||+||+.-.... ++
T Consensus 169 ~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~ 248 (450)
T 3bc8_A 169 VVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLI 248 (450)
T ss_dssp EEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH
T ss_pred EEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHH
Confidence 88876 44578999999999965 33455555555556789999999999999999999999999543211 11
Q ss_pred -C--C-CCCcEEEecccC-CCCCCceeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHH
Q 012718 257 -Q--G-LDADFLVASSHK-MCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGL 330 (458)
Q Consensus 257 -~--~-~~~d~~~~s~~K-~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 330 (458)
. + -++|+++.|.|| ++.|.|+++++++++ .++.+...+.+ ...++| .+.+
T Consensus 249 ~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g--------------------~~s~Sp----sL~l 304 (450)
T 3bc8_A 249 QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG--------------------RASASP----SLDV 304 (450)
T ss_dssp HHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS--------------------CBCSHH----HHHH
T ss_pred HHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhc--------------------CCcccH----HHHH
Confidence 1 1 258999999999 567999999998643 33322211110 111112 2444
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeC------CCChHHHHHHHhh
Q 012718 331 GAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVE------NIHPTDIATLLDQ 401 (458)
Q Consensus 331 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~l~~ 401 (458)
+.++..+...++.+..++..++++++.+.|++++ +.+++..+.. +.-..+.+. +.+..++.-.+..
T Consensus 305 ~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~-----~~~~~~~l~~~~~~~~~D~tkl~i~~~~ 379 (450)
T 3bc8_A 305 LITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN-----PISLAMTLKTIDGHHDKAVTQLGSMLFT 379 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC-----SSEEEEECTTTSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccC-----CCcceeecccccccccCCCceeEEEecC
Confidence 4554444555677777778899999999998876 7777664421 111223333 2344556655554
Q ss_pred hcCe---Eec-cC-------C-CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 402 QYGV---ATR-SG-------H-HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 402 ~~gi---~~~-~g-------~-~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
. |+ .+. +| . +-....+..+....++-+.+++..+.+|+++++++|+++.+++++
T Consensus 380 ~-g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 380 R-QVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp T-TCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 43 221 00 0 000011122333678888888889999999999999999876654
No 230
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.78 E-value=1.2e-23 Score=206.48 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=211.1
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
|..++.+.+++.+.+.+... . + ...+...++.+.|+++++ .. +.++|++||++|+..++..++ ....
T Consensus 115 Gh~~p~V~~Av~~q~~~~~~---~-----~-~~~~~~~~Lae~L~~~~p-~~-~~v~~~nSGseA~~~Aik~ar--~~tg 181 (465)
T 2yky_A 115 GHSHPVIRAAVERALAVGLN---L-----S-TQTENEALFAEAVCDRFP-SI-DLVRFTNSGTEANLMALATAT--AITG 181 (465)
Confidence 34578888888887765211 0 0 124455678889999985 22 389999999999999998653 2356
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCC--eEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecccCcCccccc----H
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGA--NLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----I 227 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~--~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l 227 (458)
+++|++.+.+||+.......-....|+ .+..++. .|++.|++.++ +++++|+++.+++++|.+.| +
T Consensus 182 r~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l 256 (465)
T 2yky_A 182 RKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFL 256 (465)
Confidence 789999999999765432200012233 2333332 27889999887 57889999888888998887 9
Q ss_pred HHHHHHHHhcCcEEEEeccccCCccc--CCCCC--CCCcEEEecccCCCCC-CceeEEEEeccccccCCCccccCcceEe
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMV--VDVQG--LDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~--~~~~~--~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
++|.++|+++|+++|+|++|+ +... ...+. ..+|++ +++|.+|+ ..+|++++++++++.+.+...+....
T Consensus 257 ~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~-- 331 (465)
T 2yky_A 257 DLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAH-- 331 (465)
Confidence 999999999999999999999 4221 11122 236654 68897775 22899999999888776521110000
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCcccc
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~ 381 (458)
....+.+....++..++|+.+.+ +.+.++++++.+++.+.|+++. ...+.... ...+.
T Consensus 332 --------------~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v----~g~G~ 390 (465)
T 2yky_A 332 --------------AGTFNNNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVENQAPLQF----TGLGS 390 (465)
Confidence 00113444555666677777755 3567777888888888876651 11221111 12366
Q ss_pred EEEEEeCC--C------------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 382 LCSFNVEN--I------------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 382 ~v~~~~~~--~------------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
++++.+.+ . ....+.+.+.++ ||.+.++.+ +. ++..++++||++++++|
T Consensus 391 ~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~~------------~~----~s~~~t~edid~~l~~l 453 (465)
T 2yky_A 391 LGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYLAPRGM------------YA----LSLEIADAGRDAFAEAL 453 (465)
Confidence 88886653 1 134677888888 999987541 11 34448999999999999
Q ss_pred HHHHHhhhc
Q 012718 448 NETVSFFNV 456 (458)
Q Consensus 448 ~~~~~~~~~ 456 (458)
++++++++.
T Consensus 454 ~~~l~~~~~ 462 (465)
T 2yky_A 454 ADFIGEQRA 462 (465)
Confidence 999987754
No 231
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=176.68 Aligned_cols=305 Identities=14% Similarity=0.121 Sum_probs=205.0
Q ss_pred HHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC---C
Q 012718 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---D 192 (458)
Q Consensus 116 ~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~---~ 192 (458)
+.++|+.+ |.+.....++++|+|.++..++.+........+++|+++...|.|+..++ ...|+++++++.. +
T Consensus 122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl----iL~Gl~Pv~V~p~~d~~ 196 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----ITAGFEPVVIENVLEGD 196 (501)
T ss_dssp HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECEEEETT
T ss_pred HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHH----HHcCCeEEEEeeeeccc
Confidence 44555555 99865568889999966666655542100012499999999999875444 4459999999873 3
Q ss_pred CCCCCHHHHHHhhcC---CceEEEEec-ccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCC-Cc
Q 012718 193 DESPDLDKLKEMLSR---KTKLVVIHH-ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLD-AD 262 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~---~~~~v~~~~-~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~-~d 262 (458)
...+|++.++++|++ +..++++.. +.+..|.+.|+++|+++||+||++++||+||+.-.. |...-..| +|
T Consensus 197 ~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 197 ELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp EEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred ccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 467899999999975 223334333 344355678999999999999999999999995442 11111235 99
Q ss_pred EEEecccC-CCCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh
Q 012718 263 FLVASSHK-MCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 263 ~~~~s~~K-~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
+++.|.|| ++.|-|.|++++++ +.++.+...+ .|+.+....+.+.+++..+...
T Consensus 277 ~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~y------------------------PGr~S~Spsldl~~tLL~lGr~ 332 (501)
T 3hl2_A 277 AFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMY------------------------PGRASASPSLDVLITLLSLGSN 332 (501)
T ss_dssp EEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTS------------------------CSCBCSHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeecCceEEEeCCHHHHHHHHHhC------------------------CCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999 67788877777765 3444432211 1344455567777888888888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCcccc-EEEEEeCCC------ChHHHHHHHhhhcCeE----
Q 012718 341 GMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAA-LCSFNVENI------HPTDIATLLDQQYGVA---- 406 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~~~------~~~~~~~~l~~~~gi~---- 406 (458)
|+.++.++..++.++|.+.|+++ -+-+++..+. .+ -+++.+... ...++-..|..+ +|.
T Consensus 333 Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~------n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~Rv 405 (501)
T 3hl2_A 333 GYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPH------NPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGARV 405 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTT------CSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCC------CceeEEEecccccccccccHHHHHHHHHhc-CCCccee
Confidence 89999999999999999999875 2344443331 23 355565432 134666777766 662
Q ss_pred eccCCCCC--hhhHhhcCC------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 407 TRSGHHCA--QPLHRYLGV------NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 407 ~~~g~~~~--~~~~~~~g~------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.+|.... .-.+..||. ..++-++.....+.+|||.++++|++++.++++
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23332000 000011111 468888888889999999999999999988765
No 232
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.84 E-value=2.3e-18 Score=168.71 Aligned_cols=339 Identities=15% Similarity=0.164 Sum_probs=220.1
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|-..+.+.+++.+.+.+........ ...+...++-+.|++++..+..+.++|++||+
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~------~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGs 135 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMV------TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGA 135 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTT------SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCc------cCcHHHHHHHHHHHHhCCCCCCcEEEEeCChH
Confidence 455677753 345678899999998887642211111 01223335667788888654334789999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----c-----CCeEEEEeCCCC------CCCCHHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----T-----GANLKFLNLNDD------ESPDLDKLKE 203 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~-----g~~~~~v~~~~~------~~~d~~~l~~ 203 (458)
+|++.+++..+ ....+++|+....+||+........... . .-.+..+|.... ...+.+.+++
T Consensus 136 EA~e~AlklAr--~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 213 (456)
T 4atq_A 136 EAVENAVKVAR--LATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR 213 (456)
T ss_dssp HHHHHHHHHHH--HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHH
T ss_pred HHHHHHHHHHh--hhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHH
Confidence 99999998764 2456779999999999887544432111 0 113455654311 1113333333
Q ss_pred hh-------c-CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccC-Cccc--C--CCCCCCCcEEEe
Q 012718 204 ML-------S-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHMV--V--DVQGLDADFLVA 266 (458)
Q Consensus 204 ~l-------~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~-g~~~--~--~~~~~~~d~~~~ 266 (458)
.+ . .++.+|+++.++...|.+.| +++|.++|++||+++|+|+++.. |..- + ......+|+++.
T Consensus 214 ~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~ 293 (456)
T 4atq_A 214 AITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITM 293 (456)
T ss_dssp HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEE
T ss_pred HHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhh
Confidence 22 2 25789999999999998887 89999999999999999999873 3221 1 122335999985
Q ss_pred cccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 267 SSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 267 s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
.| +.|...+|.+++++++.+.+.+...++ +.+.++...++..++|+.+.+.+ +
T Consensus 294 --gK~lggg~P~~av~~~~~i~~~~~~~~~~~---------------------Tf~gnpla~aaala~L~~i~~~~---l 347 (456)
T 4atq_A 294 --AKGIAGGLPLSAITGRADLLDAVHPGGLGG---------------------TYGGNPVACAAALAAIDTMEQHD---L 347 (456)
T ss_dssp --CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC---------------------SSSSCHHHHHHHHHHHHHHHHTT---H
T ss_pred --hhcccCcCCceeeEecHHHHhcccccCCCC---------------------CCCCChHHHHhhHHHHHHHhhcc---H
Confidence 57 444444899999999887776543322 22456777777778888887754 4
Q ss_pred HHHHHHHHHHHHHHHhcC----CC--EEEeCCCCCCcCccccEEEEEeCCC-----C---hHHHHHHHhhhcCeEeccCC
Q 012718 346 HAYEMELAKYLYENLLSI----PN--IRIYGPKPSEHVQRAALCSFNVENI-----H---PTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~----~~--~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~~~~~~~l~~~~gi~~~~g~ 411 (458)
.++.+++.+++.+.|+++ +. ..+.... ...|.++.+.+... + ...+.+.+.++ |+.+.+..
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~V----RG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g 422 (456)
T 4atq_A 348 NGRARHIEELALGKLRELAAELSAGGGSVVGDI----RGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCG 422 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----CEEEE----EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCceEEe----eecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecC
Confidence 455555556555555432 21 1111111 23356777776321 1 34677888888 99886432
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
. ..+.||+.+.+..|++|+|++++.|+++++.
T Consensus 423 ~----------~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 423 T----------YGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp T----------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C----------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 1468999999989999999999999999874
No 233
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.84 E-value=3.9e-19 Score=167.91 Aligned_cols=339 Identities=14% Similarity=0.132 Sum_probs=221.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHHH-HHHHHHHHcCCCCCCc--EEEeCChhHHHHHHHHHcC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYEL-ARKKVAAFINASDSGE--IVFTKNATEAINLVAYSWG 150 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~--v~~t~g~t~a~~~~~~~l~ 150 (458)
+-...++.+++++-..+.+.+..-+.+ .++.|-...+.+|. ++++..++||++..+. -|-..||+.|+..+..++
T Consensus 62 SEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~Al- 140 (490)
T 3ou5_A 62 SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL- 140 (490)
T ss_dssp TCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-
T ss_pred CCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHH-
Confidence 444678888988887776533322112 23333344455554 7888999999986521 255679999999999999
Q ss_pred CCCCCCCCEEEEcCCCCccchH-HHHH---HHHHcC--CeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcCc
Q 012718 151 LSNLKSGDEVILTVAEHHSAIV-PWQL---VAQKTG--ANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNMLA 222 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~-~~~~---~a~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG 222 (458)
++|||+|+..+..+.+++. .+.. .....| .+...++++ +++.+|.+.+++...+ ++++|++-.-. .-
T Consensus 141 ---l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~Sa--Y~ 215 (490)
T 3ou5_A 141 ---LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA--YA 215 (490)
T ss_dssp ---CC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSS--CC
T ss_pred ---cCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCcc--Cc
Confidence 8999999998887765532 1110 001112 244555555 3488999999988765 88999986543 33
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccc--------
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLS-------- 288 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~-------- 288 (458)
..+|++++.++|++.|+++++|.+|-.|. .|-.+. .+|++++|.|| +.||. .|+++++++...
T Consensus 216 r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~ 292 (490)
T 3ou5_A 216 RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGRE 292 (490)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCE
T ss_pred cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCC-ceEEEeccccccccccccch
Confidence 56789999999999999999999998443 332232 28999999999 66777 588888875321
Q ss_pred -------cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 289 -------AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 289 -------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
++...... -..|.|....+++.+.++.......+..+.+.+.++++.|.+.|.
T Consensus 293 ~~~~~~kkin~aVFP--------------------g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~ 352 (490)
T 3ou5_A 293 IPYTFEDRINFAVFP--------------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL 352 (490)
T ss_dssp EECCCHHHHHHHHTT--------------------TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCc--------------------cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 11100000 014678888888888888776555578999999999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC----CCC
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH----FYN 435 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~----~~~ 435 (458)
+. |++++...-. ..++.+.+. +.+..+..+.|.+. ||.+.-...+.- ..--.++.|||+.. ...
T Consensus 353 ~~-G~~vvsGgTd-----nHlvLvDl~~~g~tG~~ae~~Le~a-gItvNkN~iP~D---~sp~~~SGiRiGTpa~TtRG~ 422 (490)
T 3ou5_A 353 ER-GYSLVSGGTD-----NHLVLVDLRPKGLDGARAERVLELV-SITANKNTCPGD---RSAITPGGLRLGAPALTSRQF 422 (490)
T ss_dssp HT-TCEEGGGSCS-----SSEEEEECGGGTCCHHHHHHHHHHT-TEECEEECCTTC---CCSSSCSEEEEESHHHHHTTC
T ss_pred hC-CCeeecCCCC-----ceEEEEeccccCCCHHHHHHHHHHc-CcEECCCCCCCC---CCCCCCCeeEECCHHHHhCCC
Confidence 87 9999854321 335666664 56778888888887 998753221110 00112678999865 234
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNETVS 452 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~ 452 (458)
.++|++++.+.|.++++
T Consensus 423 ~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 423 REDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88999999999988775
No 234
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.82 E-value=5.1e-19 Score=172.49 Aligned_cols=323 Identities=14% Similarity=0.135 Sum_probs=209.6
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|..+ .|-..+.+.+++.+.+..... .+.. .....++.+.|++.+..- +.+.|++|||
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~---~~~~------~~~~~~lae~l~~~~p~~--~~v~f~~SGs 153 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN---LTGH------NLLEGRLARLICERFPQI--EQLRFTNSGT 153 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC---CCSE------ESSHHHHHHHHHHHSTTC--SEEEEESSHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC---ccCC------cHHHHHHHHHHHHhCCCC--CEEEEeCchH
Confidence 4556777532 345678999999988875311 1111 112235667788887532 4899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH--HcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEE
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ--KTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVI 214 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~--~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~ 214 (458)
+|+..+++..+ ....+++|+..+.+||+....+..... ........+|.+ |++.+++.+++ ++.+|++
T Consensus 154 EA~e~AiklAr--~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 154 EANLMALTAAL--HFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp HHHHHHHHHHH--HHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEE
T ss_pred HHHHHHHHHHH--hcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEe
Confidence 99999998763 234567899999999975422111000 001233444433 88888888864 5789999
Q ss_pred ecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcccC----CCCCCCCcEEEecccCC-CCCCceeEEEEecc
Q 012718 215 HHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMVV----DVQGLDADFLVASSHKM-CGPTGIGFLFGKSD 285 (458)
Q Consensus 215 ~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~~----~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~ 285 (458)
+.++...|.+.| +++|.++|++||+++|+|+++. |..-. ......+|+++ +.|. .|+..+|.+.++++
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t--~gK~lggG~Piga~~~~~e 303 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT--LGKYIGGGMSFGAFGGRAD 303 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEECHH
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEE--eccccCCCCcceeeeeHHH
Confidence 999999999998 9999999999999999999997 32211 11123489987 6784 34445899999999
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++.+.+.... .+..+ +.|+...++..++|+.+.+ +.+.+++.++.++|.+.|+++
T Consensus 304 i~~~~~~~~~~-------------------~~h~~T~~gnPla~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 304 VMALFDPRTGP-------------------LAHSGTFNNNVMTMAAGYAGLTKLFT---PEAAGALAERGEALRARLNAL 361 (454)
T ss_dssp HHGGGCTTTCS-------------------CCCCCTTTTCHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCC-------------------ccccCCCCCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHH
Confidence 88766532110 01122 3455556666666666644 556677777777777776543
Q ss_pred ----CC-EEEeCCCCCCcCccccEEEEEeCCC-----------C---hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 364 ----PN-IRIYGPKPSEHVQRAALCSFNVENI-----------H---PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 364 ----~~-~~~~~~~~~~~~~~~~~v~~~~~~~-----------~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
+- .++ ...+.++.+.+... + ...+...+.++ ||++.|.
T Consensus 362 ~~~~~~~~~v--------rg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~-------------- 418 (454)
T 4ao9_A 362 CANEGVAMQF--------TGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR-------------- 418 (454)
T ss_dssp HHHHTBSCEE--------EEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------------
T ss_pred HhhCCCCEEE--------eeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------------
Confidence 11 111 12245666655210 1 13456677788 9998653
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.+.+++. +|++|||+++++|++++.+...
T Consensus 419 ~~~~~s~~--~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 419 GFVVLSLP--LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp CEEECCTT--CCHHHHHHHHHHHHHHHHHSGG
T ss_pred CCEEEeCC--CCHHHHHHHHHHHHHHHHhccc
Confidence 23444544 7999999999999999987654
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.78 E-value=1.1e-16 Score=157.43 Aligned_cols=344 Identities=15% Similarity=0.141 Sum_probs=216.8
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|..+ .|--.+.+.+++.+.+.+...... .. + ...+...++-+.|++..+.+-+ .|.|++||+
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~-~~---~-~~~~~~~~lAe~L~~~~p~~~~-~v~f~~sGs 138 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA-FF---G-RMSDQTVMLSEKLVEVSPFDSG-RVFYTNSGS 138 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCC-CT---T-EEEHHHHHHHHHHHHHSSCSSC-EEEEESSHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccc-cc---c-ccCHHHHHHHHHHHhhCCCCcc-EEEEeCchH
Confidence 4556777532 345678999999998887532111 00 0 0122233566778888865544 899999999
Q ss_pred HHHHHHHHHcCC----CCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC---CeEEEEeCC------CCCCC-----
Q 012718 140 EAINLVAYSWGL----SNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG---ANLKFLNLN------DDESP----- 196 (458)
Q Consensus 140 ~a~~~~~~~l~~----~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g---~~~~~v~~~------~~~~~----- 196 (458)
+|++.+++..+. .......+|+....+||+.......+... .+ .....++.. ..+..
T Consensus 139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 218 (473)
T 4e3q_A 139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV 218 (473)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence 999999986421 01234568999999999876544432110 11 123334332 11111
Q ss_pred --CHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCC
Q 012718 197 --DLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDA 261 (458)
Q Consensus 197 --d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~ 261 (458)
..+++++.+. +++.+|+++.++...|.+.| +++|.++|++||+++|.|+++. +|... + ......+
T Consensus 219 ~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P 298 (473)
T 4e3q_A 219 ARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTP 298 (473)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCC
Confidence 1223444443 35789999999999998887 8999999999999999999987 33221 1 1123459
Q ss_pred cEEEecccCCC-CC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMC-GP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~~-gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
|+++ +.|.+ |+ ..+|.+++++++.+.+......... + .... ..+.|+...++..++|+.+.+
T Consensus 299 Di~t--~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~----~---------~hg~-T~~Gnpla~Aaala~L~~i~~ 362 (473)
T 4e3q_A 299 DAII--SSKNLTAGFFPMGAVILGPELSKRLETAIEAIEE----F---------PHGF-TASGHPVGCAIALKAIDVVMN 362 (473)
T ss_dssp SEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSC----C---------CCCC-TTTTCHHHHHHHHHHHHHHHH
T ss_pred ChHH--hcccccCCCCCcccccccHHHHHHhccccccccc----c---------ccCC-CCCCCcchhhhhhhhhhhhcc
Confidence 9998 67843 33 4489999999876654321100000 0 0000 124566677777788888776
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCC-------C-----ChHHHHHHHhhhcC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVEN-------I-----HPTDIATLLDQQYG 404 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-------~-----~~~~~~~~l~~~~g 404 (458)
.+ +.++.+++.++|.+.|+++ +.+.- . ...|.++.+.+.. . ....+.+.+.++ |
T Consensus 363 ~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~---v----RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-G 431 (473)
T 4e3q_A 363 EG---LAENVRRLAPRFEERLKHIAERPNIGE---Y----RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-G 431 (473)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHTTSTTEEE---E----EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-T
T ss_pred cc---HHHHHHHHHHHHHHHHHHHhcCCCeeE---E----eecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-C
Confidence 44 4555566666776666543 44321 1 2235577776531 0 134678888888 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+++. .+.+|+++++..|++|+|++++.++++++++.
T Consensus 432 ll~~~~-------------g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 432 LICRPL-------------GQSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EECEEE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEec-------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998753 35899999998999999999999999998763
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.69 E-value=1.6e-15 Score=159.03 Aligned_cols=343 Identities=10% Similarity=0.051 Sum_probs=212.4
Q ss_pred EEecCCC------CCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 69 VYLDNAA------TSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 69 i~l~~~~------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
-|||..+ .|.. .+.+.+++.+.+.++......+ . ..+...++.+.|+++++...-+.++|++||++|
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~-~-----~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA 454 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPE-N-----VYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTT-E-----ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccc-c-----CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence 4666542 3445 7889999999887753221001 1 123334677888888874422389999999999
Q ss_pred HHHHHHHc-CCCCCC------------CCCEEEEcCCCCccchHHHHHHHHH---c---------CCe------------
Q 012718 142 INLVAYSW-GLSNLK------------SGDEVILTVAEHHSAIVPWQLVAQK---T---------GAN------------ 184 (458)
Q Consensus 142 ~~~~~~~l-~~~~~~------------~g~~vl~~~~~~~s~~~~~~~~a~~---~---------g~~------------ 184 (458)
++.++... +....+ .+.+|+..+.+||+.+.....+... . +..
T Consensus 455 ~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 534 (831)
T 4a0g_A 455 IEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 534 (831)
T ss_dssp HHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEET
T ss_pred HHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccC
Confidence 99998865 100001 2447999999999887655544210 0 100
Q ss_pred -EEEEeCCCCC---------CCC------------------HHHHHHhhc--------CCceEEEEecc-cCcCccccc-
Q 012718 185 -LKFLNLNDDE---------SPD------------------LDKLKEMLS--------RKTKLVVIHHI-SNMLASILP- 226 (458)
Q Consensus 185 -~~~v~~~~~~---------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~n~tG~~~~- 226 (458)
+..++..... .-+ .+.|++.|. +++++|+++.+ ++..|...+
T Consensus 535 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~ 614 (831)
T 4a0g_A 535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVD 614 (831)
T ss_dssp TEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEEC
T ss_pred CceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCC
Confidence 0112222110 001 256777764 24689999996 899998886
Q ss_pred ---HHHHHHHHHhcCcEEEEecccc-CCccc--CCC--CCCCCcEEEecccCCCCCC--ceeEEEEeccccccCCCcccc
Q 012718 227 ---IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDV--QGLDADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 227 ---l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~--~~~~~d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g 296 (458)
+++|.++|++||+++|+|+++. +|... +.. ....+|+++ ++|.+|.. .+|++++++++++.+......
T Consensus 615 ~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~ 692 (831)
T 4a0g_A 615 PLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSGDSKL 692 (831)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEE--EecccccCccCcEEEEECHHHHHHHhccccc
Confidence 8999999999999999999987 33321 111 123488875 88955432 379999999987776532100
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH-HHHHHHHHH----HHHHHHHHhcCCCEEEeCC
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ-KIHAYEMEL----AKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~-~~~~~~~~l----~~~l~~~L~~~~~~~~~~~ 371 (458)
.. + ...+ +.+.++...++..++|+.+.+.++. ++.+....+ .+.+.+.+.+.+.+.....
T Consensus 693 ~~-----~---------~hg~-T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg 757 (831)
T 4a0g_A 693 KA-----L---------LHGH-SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV 757 (831)
T ss_dssp GS-----C---------CCCC-TTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE
T ss_pred cc-----c---------eeec-CCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee
Confidence 00 0 0011 2245666777777888887654321 111111111 2234455556665543322
Q ss_pred CCCCcCccccEEEEEeCCC---------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENI---------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
.|.++.+.+... ...++.+.+.++ ||.+++. .+.+|+++++.+|++||++
T Consensus 758 -------~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gv~v~p~-------------g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 758 -------IGTLFALELKADASNSGYASLYAKSLLIMLRED-GIFTRPL-------------GNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp -------ETTEEEEEEC---------CHHHHHHHHHHHHT-TEECCCB-------------TTEEEEECCTTCCHHHHHH
T ss_pred -------cccEEEEEEecCccccccchHHHHHHHHHHHHC-CcEEEec-------------CCEEEEECCCCCCHHHHHH
Confidence 266777777421 134688888888 9999864 3689999988899999999
Q ss_pred HHHHHHHHHHhhh
Q 012718 443 FIHALNETVSFFN 455 (458)
Q Consensus 443 l~~~l~~~~~~~~ 455 (458)
++++|.++++++.
T Consensus 817 ~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 817 LLTKLYKRLGEFN 829 (831)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 237
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=53.72 E-value=41 Score=31.93 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEec
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHH 216 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~ 216 (458)
..+++.+....+ ++-+.+.+.+|-.......|..+.+..| ++..+- ++-..-+++.+++.++.+. .++.+ -
T Consensus 281 ~~elid~y~~ll-----e~ypI~~IEDPl~~dD~eg~a~Lt~~lg-~i~IvG-DEl~vTn~~~i~~~Ie~~a~n~IlI-K 352 (441)
T 3qtp_A 281 VDGLIAEYVDYG-----KHYPIASIEDPFAEDDWAAWNKFTVEHG-NFQIVG-DDLLVTNPARVQMAMDKNACNSVLI-K 352 (441)
T ss_dssp HHHHHHHHHHHH-----HHSCEEEEESCSCTTCHHHHHHHHHHTT-TSEEEE-STTTTTCHHHHHHHHHHTCCSEEEE-C
T ss_pred HHHHHHHHHHHh-----hhcceeeecCCCChHHHHHHHHHHHhcC-CceEEe-ccccccCHHHHHHHHHcCCCCEEEe-c
Confidence 455665555433 3344788889988888889999988877 332222 2223336888988887754 44443 3
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEe
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVD 244 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD 244 (458)
+ |..|.+....+++++|+++|+.+++=
T Consensus 353 v-nqiGGITEalkaa~lA~~~G~~vmvs 379 (441)
T 3qtp_A 353 V-NQIGTLTETFKTIKMAQEKGWGVMAS 379 (441)
T ss_dssp G-GGTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred c-cccccHHHHHHHHHHHHHcCCeEEEe
Confidence 3 55788888999999999999887753
No 238
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=53.39 E-value=21 Score=29.84 Aligned_cols=35 Identities=9% Similarity=0.306 Sum_probs=30.2
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+..++.+-..|..|......++.+++++||+.++
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~ii 193 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKII 193 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEE
Confidence 56777777666889999999999999999998776
No 239
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=50.69 E-value=1.2e+02 Score=25.84 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=6.9
Q ss_pred cEEEeCChhHHH
Q 012718 131 EIVFTKNATEAI 142 (458)
Q Consensus 131 ~v~~t~g~t~a~ 142 (458)
+|+++.|+|..+
T Consensus 65 dVIISRGgta~~ 76 (225)
T 2pju_A 65 DAIIAAGSNGAY 76 (225)
T ss_dssp SEEEEEHHHHHH
T ss_pred eEEEeCChHHHH
Confidence 566666666443
No 240
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae}
Probab=49.28 E-value=1.4e+02 Score=28.44 Aligned_cols=98 Identities=13% Similarity=0.243 Sum_probs=66.2
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~ 217 (458)
.+++..+-..+ ++-+.+++.+|-.......|..+.+..+..+..+- ++...-++..+++.++.+. .+|.+. +
T Consensus 292 ~eai~~~~~ll-----e~y~i~~IEdPl~~dD~eg~~~L~~~~~~~ipI~g-DE~~~tn~~~~~~~i~~~a~d~i~iK-v 364 (449)
T 3uj2_A 292 EELVAHWKSLC-----ERYPIVSIEDGLDEEDWEGWQYMTRELGDKIQLVG-DDLFVTNTERLNKGIKERCGNSILIK-L 364 (449)
T ss_dssp HHHHHHHHHHH-----HHSCEEEEESCSCTTCHHHHHHHHHHHTTTSEEEE-STTTTTCHHHHHHHHHTTCCSEEEEC-H
T ss_pred HHHHHHHHHHH-----HhcCceEEECCCCcchHHHHHHHHHHhCCCceEEC-CcceeCCHHHHHHHHHcCCCCEEEEC-c
Confidence 45555543323 23357889999888888889988887764433221 2222225888999887765 444433 3
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEe
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVD 244 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD 244 (458)
+..|.+....+++++|+++|+.+++=
T Consensus 365 -~~iGGiTea~kia~lA~~~Gi~~~v~ 390 (449)
T 3uj2_A 365 -NQIGTVSETLEAIKMAHKAGYTAVVS 390 (449)
T ss_dssp -HHHCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred -cccCCHHHHHHHHHHHHHcCCeEEEe
Confidence 55788888999999999999987653
No 241
>3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni}
Probab=47.84 E-value=1.3e+02 Score=28.24 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEec
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHH 216 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~ 216 (458)
..+++...-..+ ++-+.+++.+|-.......|..+.+..|.++- +-.++...-++..+++.++.+. .++.+ -
T Consensus 263 ~~eai~~~~~ll-----~~y~i~~IEdPl~~dD~e~~~~L~~~~g~~ip-I~gDE~~~tn~~~~~~~i~~~a~d~i~i-K 335 (417)
T 3qn3_A 263 SEALIERYVELC-----AKYPICSIEDGLAENDFEGWIKLTEKLGNKIQ-LVGDDLFVTNEDILREGIIKKMANAVLI-K 335 (417)
T ss_dssp HHHHHHHHHHHH-----HHSCEEEEESSSCTTCHHHHHHHHHHHTTTSE-EEESTTTTTCHHHHHHHHHHTCCSEEEE-C
T ss_pred HHHHHHHHHHHH-----hhcceeEEecCCCcccHHHHHHHHHhhCCCCc-eecCCcccCCHHHHHHHHHhCCCCEEEe-c
Confidence 345665554323 33357889999888888889988887763332 2223333224888888887654 44433 3
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEec
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDA 245 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~ 245 (458)
+ |..|.+....+++++|+++|+.+++=.
T Consensus 336 v-~qiGGiTea~kia~lA~~~G~~v~vsh 363 (417)
T 3qn3_A 336 P-NQIGTITQTMRTVRLAQRNNYKCVMSH 363 (417)
T ss_dssp H-HHHCSHHHHHHHHHHHHHTTCEEEEEC
T ss_pred C-CCCCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 3 557888889999999999999887644
No 242
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=47.00 E-value=69 Score=27.44 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+|+++..+.+.. ..|.+|++..+.-.. .+. ..+..+.|.++..+++... +++.+.+ .+..+|+++-.
T Consensus 33 TT~lL~~~~r~~-----~~g~kvli~kp~~D~-Ryg-~~i~sr~G~~~~a~~i~~~-----~di~~~~-~~~dvViIDEa 99 (234)
T 2orv_A 33 STELMRRVRRFQ-----IAQYKCLVIKYAKDT-RYS-SSFCTHDRNTMEALPACLL-----RDVAQEA-LGVAVIGIDEG 99 (234)
T ss_dssp HHHHHHHHHHHH-----TTTCCEEEEEETTCC-CC------------CEEEEESSG-----GGGHHHH-TTCSEEEESSG
T ss_pred HHHHHHHHHHHH-----HCCCeEEEEeecCCc-cch-HHHHhhcCCeeEEEecCCH-----HHHHHHh-ccCCEEEEEch
Confidence 457777777665 345556655443321 112 3444555777666655421 2233333 45689999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQ 247 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~ 247 (458)
+..++ +.++.++....|+.||+=+-.
T Consensus 100 QF~~~----v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 100 QFFPD----IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp GGCTT----HHHHHHHHHHTTCEEEEECCS
T ss_pred hhhhh----HHHHHHHHHhCCCEEEEEecc
Confidence 88864 788888888899999976554
No 243
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=46.22 E-value=1.9e+02 Score=27.31 Aligned_cols=99 Identities=11% Similarity=0.197 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEec
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHH 216 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~ 216 (458)
..+++..+-..+ ++-+.+++.+|-.......|..+.+..+..+..+- ++-...++..+++.++.+. .+|.+ -
T Consensus 265 ~~eai~~~~~ll-----~~y~i~~IEdPl~~dD~eg~~~L~~~~~~pI~ivG-Del~vt~~~~~~~~i~~~a~d~i~i-K 337 (428)
T 3tqp_A 265 SEEMIDRLTEWT-----KKYPVISIEDGLSENDWAGWKLLTERLENKVQLVG-DDIFVTNPDILEKGIKKNIANAILV-K 337 (428)
T ss_dssp HHHHHHHHHHHH-----HHSCEEEEECCSCTTCHHHHHHHHHHHTTTSEEEE-STTTTTCHHHHHHHHHTTCCSEEEE-C
T ss_pred HHHHHHHHHHHH-----hhcccceEeCCCCcccHHHHHHHHHhcCCCcceec-cccccCCHHHHHHHHHhCCCCEEEe-c
Confidence 355665554423 23357889999888888889998888775443322 2223337888888887764 44433 3
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEe
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVD 244 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD 244 (458)
+ |..|.+....+++++|+++|+.+++=
T Consensus 338 v-~~iGGiTealkia~lA~~~G~~~~v~ 364 (428)
T 3tqp_A 338 L-NQIGTLTETLATVGLAKSNKYGVIIS 364 (428)
T ss_dssp H-HHHCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred c-cccCCHHHHHHHHHHHHHcCCeEEEe
Confidence 3 55788888999999999999987653
No 244
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=41.31 E-value=69 Score=30.45 Aligned_cols=101 Identities=11% Similarity=0.147 Sum_probs=68.6
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEe
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIH 215 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~ 215 (458)
+..+++.+....+ ++-+.+.+.+|-.......|..+.+..|-++..+- ++...-++..+++.++.+. .++.+
T Consensus 282 t~~Elid~y~~ll-----e~ypIv~IEDPl~~dD~eg~a~Lt~~lg~~iqIvG-DDl~vTn~~~i~~~Ie~~a~n~IlI- 354 (452)
T 3otr_A 282 TGEKLKEVYEGWL-----KKYPIISVEDPFDQDDFASFSAFTKDVGEKTQVIG-DDILVTNILRIEKALKDKACNCLLL- 354 (452)
T ss_dssp CHHHHHHHHHHHH-----HHSCEEEEECCSCTTCHHHHHHHHHHHTTTSEEEE-STTTTTCHHHHHHHHHHTCCSEEEE-
T ss_pred cHHHHHHHHHHHH-----hhhCceEEecCCChhhHHHHHHHHHhhCCCeEEEe-CccccCCHHHHHHHHhcCCCCEEEe-
Confidence 3456666655433 23347888899888888899999888773332232 2222336888888887654 44433
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEec
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDA 245 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~ 245 (458)
-+ |..|.+....+++++|+++|+.+++=.
T Consensus 355 Kv-nQIGgITEalka~~lA~~~G~~vmvsh 383 (452)
T 3otr_A 355 KV-NQIGSVTEAIEACLLAQKSGWGVQVSH 383 (452)
T ss_dssp CH-HHHCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ec-cccccHHHHHHHHHHHHHcCCeEEEeC
Confidence 22 457888888899999999998877643
No 245
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=40.34 E-value=88 Score=27.70 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=44.5
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHhh---c-CCceEEEEecccCcCcccccHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEML---S-RKTKLVVIHHISNMLASILPIEEI 230 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~l---~-~~~~~v~~~~~~n~tG~~~~l~~i 230 (458)
++..+++..+. |..+++++|.+...+.- .++....+.+|.+.+ + .++++|+++...++ +-+
T Consensus 178 ~~~~~v~~H~a-------f~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~ 243 (286)
T 3gi1_A 178 RSKTFVTQHTA-------FSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-------KIA 243 (286)
T ss_dssp SCCEEEEEESC-------CHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-------HHH
T ss_pred CCCEEEEECCc-------hHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHH
Confidence 46677776653 35567888999877653 334455555555544 3 36788888765332 334
Q ss_pred HHHHHhcCcEEE
Q 012718 231 VHWSHDVGAKVL 242 (458)
Q Consensus 231 ~~l~~~~~~~vi 242 (458)
..++++.|+.++
T Consensus 244 ~~la~~~g~~v~ 255 (286)
T 3gi1_A 244 HAIAKSTGAKVK 255 (286)
T ss_dssp HHHHHTTTCEEE
T ss_pred HHHHHHhCCeEE
Confidence 456788888776
No 246
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=39.90 E-value=72 Score=30.34 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEec
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHH 216 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~ 216 (458)
..+++..+...+ ++-+.+++.+|-.......|..+.+.....+ -.++....++..+++.+..+. .+|.+ -
T Consensus 275 ~~eai~~~~~~l-----~~y~i~~iEdPl~~dD~~g~~~l~~~~~ipI---~gDE~~vt~~~~~~~~i~~~a~d~i~i-k 345 (436)
T 2al1_A 275 GPQLADLYHSLM-----KRYPIVSIEDPFAEDDWEAWSHFFKTAGIQI---VADDLTVTNPKRIATAIEKKAADALLL-K 345 (436)
T ss_dssp HHHHHHHHHHHH-----HHSCEEEEECCSCTTCHHHHHHHHTTCCSEE---EESTTTTTCHHHHHHHHHTTCCSEEEE-C
T ss_pred HHHHHHHHHHHH-----HhCCcEEEECCCCCcCHHHHHHHHhcCCCeE---EECCcccCCHHHHHHHHHhCCCCEEEe-c
Confidence 345555544433 3345789999988888888888766533322 223322237889999998765 44444 3
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
+ |..|.+....+++++|+++|+.+++
T Consensus 346 v-~qiGGitea~~ia~lA~~~g~~~~~ 371 (436)
T 2al1_A 346 V-NQIGTLSESIKAAQDSFAAGWGVMV 371 (436)
T ss_dssp H-HHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred h-hhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 3 4578888899999999999997765
No 247
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=39.75 E-value=84 Score=29.89 Aligned_cols=95 Identities=12% Similarity=0.166 Sum_probs=64.9
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~ 217 (458)
.+++..+...+ ++-+.+.+.+|-.......|..+.+.....+ -.++....++..+++.++.+. .+|.+ -+
T Consensus 273 ~e~~~~~~~ll-----~~y~i~~IEdPl~~dD~~g~~~L~~~~~ipI---~gDE~~vt~~~~~~~~i~~~a~d~i~i-Kv 343 (439)
T 2akz_A 273 DQLGALYQDFV-----RDYPVVSIEDPFDQDDWAAWSKFTANVGIQI---VGDDLTVTNPKRIERAVEEKACNCLLL-KV 343 (439)
T ss_dssp HHHHHHHHHHH-----HHSCEEEEECCSCTTCHHHHHHHHHTCSSEE---EESTTTTTCHHHHHHHHHTTCCSEEEE-CH
T ss_pred HHHHHHHHHHH-----HhCCCcEEECCCCcccHHHHHHHHhCCCCEE---EeCCCccCCHHHHHHHHHhCCCCEEEe-ch
Confidence 44455544433 2335789999998888888888877643322 223323338899999998865 44444 23
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
|..|.+....+++++|+++|+.+++
T Consensus 344 -~qiGGitea~~ia~lA~~~g~~~~~ 368 (439)
T 2akz_A 344 -NQIGSVTEAIQACKLAQENGWGVMV 368 (439)
T ss_dssp -HHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred -hhcCCHHHHHHHHHHHHHCCCeEEe
Confidence 4578888889999999999997765
No 248
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=38.23 E-value=78 Score=26.67 Aligned_cols=113 Identities=8% Similarity=0.082 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEE-EcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVI-LTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl-~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
.+.+.+.+.+.+|.+....+++.+.|..+-.++ ..+. .-..|-+++ +.+..-.... . . ....|.++.
T Consensus 68 V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa-~~~~--~~~~g~~iVg~~D~dp~~ki-G-~--~~i~GvpV~----- 135 (212)
T 3keo_A 68 VKKLMNFFAEILNDHSTTNVMLVGCGNIGRALL-HYRF--HDRNKMQISMAFDLDSNDLV-G-K--TTEDGIPVY----- 135 (212)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHT-TCCC--CTTSSEEEEEEEECTTSTTT-T-C--BCTTCCBEE-----
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHH-Hhhh--cccCCeEEEEEEeCCchhcc-C-c--eeECCeEEe-----
Confidence 457778888999988665777776666554433 2221 112232322 2222111010 0 0 001244433
Q ss_pred CCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 192 DDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+.+++++.+.+ ++..++++.|+. ..+++++.|.+.|+.-|+.=+..
T Consensus 136 -----~~~dL~~~v~~~~Id~vIIAvPs~------~aq~v~d~lv~~GIk~I~nFap~ 182 (212)
T 3keo_A 136 -----GISTINDHLIDSDIETAILTVPST------EAQEVADILVKAGIKGILSFSPV 182 (212)
T ss_dssp -----EGGGHHHHC-CCSCCEEEECSCGG------GHHHHHHHHHHHTCCEEEECSSS
T ss_pred -----CHHHHHHHHHHcCCCEEEEecCch------hHHHHHHHHHHcCCCEEEEcCCc
Confidence 23567777766 567777776643 35789999999999888876643
No 249
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=37.55 E-value=63 Score=28.60 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=45.1
Q ss_pred CCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 165 AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 165 ~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
+-|......+...++..|.++.......+.....+.++..+..++..|++..... . .+....+.+++.|++++.
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~----~~~~~~~~~~~~~iPvV~ 88 (313)
T 3m9w_A 15 ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG-Q----VLSNVVKEAKQEGIKVLA 88 (313)
T ss_dssp STTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSST-T----SCHHHHHHHHTTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-h----hhHHHHHHHHHCCCeEEE
Confidence 3344556677778888999998877643221122345666667787776654421 1 234566677788887663
No 250
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=37.21 E-value=1.4e+02 Score=25.53 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=56.6
Q ss_pred cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEc----CC-----C-CccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHH
Q 012718 131 EIVFTKNATEAINLVAYSWGLSNLKSGDEVILT----VA-----E-HHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDK 200 (458)
Q Consensus 131 ~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~----~~-----~-~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~ 200 (458)
-++..+||-.+...+..+. +.|-.|... .. . |..........|+..|++...+++......-.++
T Consensus 7 vvvl~SGGkDSs~al~~l~-----~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~ 81 (237)
T 3rjz_A 7 VAVLYSGGKDSNYALYWAI-----KNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVED 81 (237)
T ss_dssp EEEECCSSHHHHHHHHHHH-----HTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CHHH
T ss_pred EEEEecCcHHHHHHHHHHH-----HcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHH
Confidence 4567788888777776654 345444321 11 1 1122335577888999999988877443223577
Q ss_pred HHHhhcC-CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEE
Q 012718 201 LKEMLSR-KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVL 242 (458)
Q Consensus 201 l~~~l~~-~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vi 242 (458)
+.+.+.. +...++ +|.+.. ...+-..|.+.|+..+
T Consensus 82 l~~~l~~~~i~~vv-------~Gdi~s~yqr~r~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 82 LKRVLSGLKIQGIV-------AGALASKYQRKRIEKVAKELGLEVY 120 (237)
T ss_dssp HHHHHTTSCCSEEE-------CC---CCSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCCcEEE-------ECCcchHHHHHHHHHHHHHcCCEEE
Confidence 7777765 333443 455554 4578888988887665
No 251
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=37.12 E-value=1.1e+02 Score=24.63 Aligned_cols=35 Identities=6% Similarity=0.026 Sum_probs=24.6
Q ss_pred hhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 204 MLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 204 ~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+.++..+|+++. +|.-..+-++++.++++|+.+|
T Consensus 84 ~~~~~d~~i~iS~----sG~t~~~~~~~~~ak~~g~~vi 118 (187)
T 3sho_A 84 NLRPTDLMIGVSV----WRYLRDTVAALAGAAERGVPTM 118 (187)
T ss_dssp TCCTTEEEEEECC----SSCCHHHHHHHHHHHHTTCCEE
T ss_pred cCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCCEE
Confidence 3455655666655 6777778888899999886554
No 252
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=37.00 E-value=64 Score=26.97 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=28.6
Q ss_pred CceEEEEecc-cCcCcccccHHHHHHHHHhcCcEEE
Q 012718 208 KTKLVVIHHI-SNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 208 ~~~~v~~~~~-~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+..++.+-+ -|..|......++.+++++||+.++
T Consensus 158 ~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~i 193 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALI 193 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEE
T ss_pred CceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEE
Confidence 5566666552 5678999999999999999999887
No 253
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=34.75 E-value=21 Score=34.41 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHH-------HHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCccc
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVA-------QKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASI 224 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a-------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~ 224 (458)
...+|..+++--.++. |..++ +..|+..+.++..-+...........-.. .+.-+ .+.+..|..
T Consensus 5 ~~~~g~~~i~~~f~W~-----w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy---~i~~~~Gt~ 76 (496)
T 4gqr_A 5 NTQQGRTSIVHLFEWR-----WVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSY---KLCTRSGNE 76 (496)
T ss_dssp CCCTTCCEEEEETTCC-----HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS---CSCBTTBCH
T ss_pred CCCCCCcEEEEecCCC-----HHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCc---eeCCCCCCH
Confidence 3556777777666664 33332 23588888886442210000000000000 11111 245668999
Q ss_pred ccHHHHHHHHHhcCcEEEEecccc
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
.+++++++-||++|+.||+|.+.-
T Consensus 77 ~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 77 DEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHCCCEEEEEEccC
Confidence 999999999999999999999954
No 254
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=34.45 E-value=1.2e+02 Score=27.33 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHh---hcC-CceEEEEecccCcCcccccHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEM---LSR-KTKLVVIHHISNMLASILPIEEI 230 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~---l~~-~~~~v~~~~~~n~tG~~~~l~~i 230 (458)
++..+++..+ +|..+++++|.+...+.- .++.+..+.+|.+. +++ ++++|+++...+ -+.+
T Consensus 189 ~~~~~v~~H~-------af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~-------~~~~ 254 (312)
T 2o1e_A 189 EKKEFITQHT-------AFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIAS-------SKVA 254 (312)
T ss_dssp SCCEEEESSC-------TTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCC-------HHHH
T ss_pred CCCEEEEECC-------chHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------hHHH
Confidence 4567777655 345667889999776542 23445566665554 444 567777766533 2445
Q ss_pred HHHHHhcCcEEE
Q 012718 231 VHWSHDVGAKVL 242 (458)
Q Consensus 231 ~~l~~~~~~~vi 242 (458)
..++++.|+.++
T Consensus 255 ~~ia~e~g~~v~ 266 (312)
T 2o1e_A 255 DTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHTCCEEE
T ss_pred HHHHHHhCCcEE
Confidence 556788887764
No 255
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=34.44 E-value=75 Score=26.81 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=27.8
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+..++.+-. |..|......++.+++++||+.++
T Consensus 167 ~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~i 200 (217)
T 1g57_A 167 KPAGVLCELT-NDDGTMARAPECIEFANKHNMALV 200 (217)
T ss_dssp CSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEE
T ss_pred CceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEE
Confidence 5566665554 678999999999999999998876
No 256
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=32.82 E-value=46 Score=27.56 Aligned_cols=51 Identities=10% Similarity=0.248 Sum_probs=39.5
Q ss_pred CHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcC--cEEEEeccccCCcc
Q 012718 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG--AKVLVDACQSVPHM 252 (458)
Q Consensus 197 d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~--~~vivD~a~~~g~~ 252 (458)
|.++|++++......+++- +|.+..++++++.++++| +.++.|-+.+++.-
T Consensus 18 ~~~~l~~al~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d 70 (192)
T 3kts_A 18 NQKDMEKILELDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVNGLKND 70 (192)
T ss_dssp SSHHHHHHTTSSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEETCCCS
T ss_pred CHHHHHHHHcCCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchhccCCc
Confidence 6788999998877777663 467788999999999987 45677777776543
No 257
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=32.25 E-value=1.7e+02 Score=26.32 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=51.2
Q ss_pred cEEEeCC-hhHHHHHHHHHcCCCCCCCCCEEE-EcCCC--CccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc
Q 012718 131 EIVFTKN-ATEAINLVAYSWGLSNLKSGDEVI-LTVAE--HHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS 206 (458)
Q Consensus 131 ~v~~t~g-~t~a~~~~~~~l~~~~~~~g~~vl-~~~~~--~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~ 206 (458)
.|++|++ |.-+-.++-..+ +.|..|. +.... ..........+ ...|++++..++. |.+.+.+.+.
T Consensus 12 ~IlVtGatG~iG~~l~~~L~-----~~g~~V~~l~R~~~~~~~~~~~~~~l-~~~~v~~~~~Dl~-----d~~~l~~~~~ 80 (346)
T 3i6i_A 12 RVLIAGATGFIGQFVATASL-----DAHRPTYILARPGPRSPSKAKIFKAL-EDKGAIIVYGLIN-----EQEAMEKILK 80 (346)
T ss_dssp CEEEECTTSHHHHHHHHHHH-----HTTCCEEEEECSSCCCHHHHHHHHHH-HHTTCEEEECCTT-----CHHHHHHHHH
T ss_pred eEEEECCCcHHHHHHHHHHH-----HCCCCEEEEECCCCCChhHHHHHHHH-HhCCcEEEEeecC-----CHHHHHHHHh
Confidence 5777654 555555554433 2344444 33322 11111111111 2347777666654 7888888887
Q ss_pred C-CceEEE-EecccCcCcccccHHHHHHHHHhcC-cEEEE
Q 012718 207 R-KTKLVV-IHHISNMLASILPIEEIVHWSHDVG-AKVLV 243 (458)
Q Consensus 207 ~-~~~~v~-~~~~~n~tG~~~~l~~i~~l~~~~~-~~viv 243 (458)
+ ++..|+ .....|..| ...+.+.|++.| +..++
T Consensus 81 ~~~~d~Vi~~a~~~n~~~----~~~l~~aa~~~g~v~~~v 116 (346)
T 3i6i_A 81 EHEIDIVVSTVGGESILD----QIALVKAMKAVGTIKRFL 116 (346)
T ss_dssp HTTCCEEEECCCGGGGGG----HHHHHHHHHHHCCCSEEE
T ss_pred hCCCCEEEECCchhhHHH----HHHHHHHHHHcCCceEEe
Confidence 3 444444 333333333 468888899888 64444
No 258
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A
Probab=32.06 E-value=91 Score=29.55 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=61.0
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWS 234 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l~ 234 (458)
+-+.+++.+|-.......|..+.+..|.++-.+- ++....+.+.+++.++.+. .+|.+ -+ |..|.+....+++++|
T Consensus 287 ~y~i~~iEdPl~~~D~~g~~~l~~~~g~~ipI~g-De~~v~~~~~~~~~i~~~a~d~i~i-k~-~~~GGitea~~i~~lA 363 (432)
T 2ptz_A 287 DYPIVSIEDPYDQDDFAGFAGITEALKGKTQIVG-DDLTVTNTERIKMAIEKKACNSLLL-KI-NQIGTISEAIASSKLC 363 (432)
T ss_dssp HSCEEEEECCSCTTCHHHHHHHHHHTTTTSEEEE-STTTTTCHHHHHHHHHTTCCSEEEE-CH-HHHCCHHHHHHHHHHH
T ss_pred hCCceEEECCCCcchHHHHHHHHHhcCCCCeEEe-cCcccCCHHHHHHHHHcCCCCEEEe-cc-cccCCHHHHHHHHHHH
Confidence 3357899999998888899998888743332222 2222347888999888765 44444 33 4578888889999999
Q ss_pred HhcCcEEEEe
Q 012718 235 HDVGAKVLVD 244 (458)
Q Consensus 235 ~~~~~~vivD 244 (458)
+++|+.+++=
T Consensus 364 ~~~g~~v~~~ 373 (432)
T 2ptz_A 364 MENGWSVMVS 373 (432)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEec
Confidence 9999988654
No 259
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=31.79 E-value=1.7e+02 Score=27.60 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=61.4
Q ss_pred CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHHHHHh
Q 012718 158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSHD 236 (458)
Q Consensus 158 ~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l~~~ 236 (458)
+..++.+|-.+.....|..+.+..|..+ .|-.++-...+...+++.+..+. .+|.+. + +..|.+....+++++|++
T Consensus 284 ~i~~iEePl~~~d~~~~~~l~~~~~~~i-pIa~dEl~~~~~~~~~~~i~~~a~d~i~ik-~-~~~GGite~~~i~~~A~~ 360 (431)
T 2fym_A 284 PIVSIEDGLDESDWDGFAYQTKVLGDKI-QLVGDDLFVTNTKILKEGIEKGIANSILIK-F-NQIGSLTETLAAIKMAKD 360 (431)
T ss_dssp CEEEEESCSCTTCHHHHHHHHHHHTTTS-EEEESTTTTTCHHHHHHHHHTTCCSEEEEC-G-GGTCSHHHHHHHHHHHHH
T ss_pred CceEEECCCCcccHHHHHHHHHHhCCCC-eEEeCCcccCCHHHHHHHHHhCCCCEEEEC-c-cccCCHHHHHHHHHHHHH
Confidence 4789999998888888888887764322 22234323447888999887754 455443 3 568888889999999999
Q ss_pred cCcEEEEec
Q 012718 237 VGAKVLVDA 245 (458)
Q Consensus 237 ~~~~vivD~ 245 (458)
+|+.+++-.
T Consensus 361 ~g~~~~~~h 369 (431)
T 2fym_A 361 AGYTAVISH 369 (431)
T ss_dssp TTCEEEEEC
T ss_pred CCCeEEEeC
Confidence 999887643
No 260
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=31.45 E-value=1.4e+02 Score=24.26 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=27.2
Q ss_pred HHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 202 KEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 202 ~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
...+.++.-+|+++. +|.-..+-++++.++++|+.+|
T Consensus 104 ~~~~~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI 140 (196)
T 2yva_A 104 RALGHAGDVLLAIST----RGNSRDIVKAVEAAVTRDMTIV 140 (196)
T ss_dssp HHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEE
T ss_pred HhcCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEE
Confidence 345666666677765 5877778888999999997654
No 261
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=31.15 E-value=1.6e+02 Score=25.37 Aligned_cols=71 Identities=10% Similarity=-0.075 Sum_probs=40.8
Q ss_pred ccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE-Eec
Q 012718 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL-VDA 245 (458)
Q Consensus 168 ~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi-vD~ 245 (458)
......+...++..|.++.......+.....+.++..+..++..+++..... + + ...+.+++.+++++ +|.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~----~--~~~~~l~~~~iPvV~~~~ 95 (287)
T 3bbl_A 24 DQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINY-N----D--PRVQFLLKQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCT-T----C--HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCC-C----c--HHHHHHHhcCCCEEEECC
Confidence 3445566777888899887765443333334556666677787777654322 1 1 23344556677544 443
No 262
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=30.99 E-value=2.4e+02 Score=24.17 Aligned_cols=79 Identities=11% Similarity=0.115 Sum_probs=50.6
Q ss_pred CEEEE-cCCCCccchHHHHHHHHHcCCeEEEEeCC--------CCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccH
Q 012718 158 DEVIL-TVAEHHSAIVPWQLVAQKTGANLKFLNLN--------DDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 158 ~~vl~-~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--------~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l 227 (458)
.+|+. .+..|.. .+..+.+..+..+..++.. ..+.+++++..+.++. +++.++..|.....-...+.
T Consensus 161 ~~i~~~GDt~~~~---~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~ 237 (264)
T 3rpc_A 161 PTVYLVGDTVWTS---DVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSR 237 (264)
T ss_dssp CCEEECCSCCSCH---HHHHHHHHHCCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCH
T ss_pred cEEEEECCcCchH---HHHHHHHHhCCCEEEEecCccccccccCCcccCHHHHHHHHHhCCcCeEEEEccccccccccCH
Confidence 34444 4555553 3455566678888888876 2456777766555533 56778888875433344568
Q ss_pred HHHHHHHHhcCc
Q 012718 228 EEIVHWSHDVGA 239 (458)
Q Consensus 228 ~~i~~l~~~~~~ 239 (458)
+++.+.+++.|+
T Consensus 238 ~~l~~~~~~~g~ 249 (264)
T 3rpc_A 238 KDVRKFIKGNNI 249 (264)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 888888887764
No 263
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=30.95 E-value=27 Score=24.50 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q 012718 227 IEEIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a 246 (458)
-.+|.++|+++|+.++.|-.
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 56899999999999999976
No 264
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=30.91 E-value=99 Score=27.73 Aligned_cols=71 Identities=7% Similarity=0.149 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe-CCCCCCCCHHHHHHhh---cC-CceEEEEecccCcCcccccHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN-LNDDESPDLDKLKEML---SR-KTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~-~~~~~~~d~~~l~~~l---~~-~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+..+++..+ +|..+++++|.+...+. +.++....+.+|.+.+ ++ ++++|+++...++ +.+.
T Consensus 190 ~~~~v~~H~-------af~Yfa~~yGl~~~~~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~-------k~~~ 255 (307)
T 3ujp_A 190 QRFLVSCEG-------AFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQK 255 (307)
T ss_dssp GCEEEEEES-------TTHHHHHHTTCEEEEEESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHH
T ss_pred CCEEEEECc-------hHHHHHHHCCCcEEEeeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCCh-------HHHH
Confidence 345666554 34566788999987653 4455556666655544 33 6788888765443 4456
Q ss_pred HHHHhcCcEE
Q 012718 232 HWSHDVGAKV 241 (458)
Q Consensus 232 ~l~~~~~~~v 241 (458)
.++++.|+.+
T Consensus 256 ~ia~e~g~~v 265 (307)
T 3ujp_A 256 QVAQATGARF 265 (307)
T ss_dssp HTTTTTCCEE
T ss_pred HHHHHhCCce
Confidence 6677888765
No 265
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=30.84 E-value=43 Score=29.72 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=40.9
Q ss_pred HHHHHHHcCCeEEEEe-CCCCCCCCHHHHHHhh---cC-CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 174 WQLVAQKTGANLKFLN-LNDDESPDLDKLKEML---SR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 174 ~~~~a~~~g~~~~~v~-~~~~~~~d~~~l~~~l---~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
|..+++++|.+...+. +.++.+..+.+|.+.+ ++ ++++|+++...++ -..+.|.++|++.|+.+++
T Consensus 173 f~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~l~~~a~~~g~~v~~ 243 (282)
T 3mfq_A 173 FNYFAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIFTESTTNP----ERMKKLQEAVKAKGGQVEV 243 (282)
T ss_dssp CHHHHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBTTSCT----HHHHHHHHHHHTTSCCCEE
T ss_pred HHHHHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh----HHHHHHHHHHHhcCCceEE
Confidence 3556788899877543 2344455666665554 33 6788877554221 1267788889998876543
No 266
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=30.80 E-value=1.4e+02 Score=27.24 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc-----ccHHHHHHHHHhcCcEEEEec
Q 012718 171 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI-----LPIEEIVHWSHDVGAKVLVDA 245 (458)
Q Consensus 171 ~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~-----~~l~~i~~l~~~~~~~vivD~ 245 (458)
...+..+.+..|++.+.+|+.. +.+ ... ...|.+ .-++++++.|+++|+.+|+|-
T Consensus 45 t~~m~~~i~~~G~N~vRipi~w------~~~---~~~-----------~~~g~~~~~~l~~ld~vV~~a~~~Gi~vIlDl 104 (340)
T 3qr3_A 45 IGQMQHFVNEDGMTIFRLPVGW------QYL---VNN-----------NLGGNLDSTSISKYDQLVQGCLSLGAYCIVDI 104 (340)
T ss_dssp HHHHHHHHHHHCCCEEEEEECH------HHH---TTT-----------CTTCCCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEeeH------HHh---CCC-----------CCCCccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3344555566799999999851 222 110 112222 227899999999999999998
Q ss_pred cccC
Q 012718 246 CQSV 249 (458)
Q Consensus 246 a~~~ 249 (458)
-+..
T Consensus 105 H~~~ 108 (340)
T 3qr3_A 105 HNYA 108 (340)
T ss_dssp CSTT
T ss_pred cCCc
Confidence 7543
No 267
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Probab=30.76 E-value=80 Score=29.86 Aligned_cols=96 Identities=10% Similarity=0.148 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEec
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHH 216 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~ 216 (458)
..+++..+...+ .+-+..++.+|..+.....+..+.+..+. .|-.++...-+..++++.+..+. .+|.+.
T Consensus 269 ~~~ai~~~~~~l-----~~~~i~~iEeP~~~~d~~~~~~l~~~~~i---pIa~dE~~~~~~~~~~~~i~~~a~d~i~ik- 339 (427)
T 2pa6_A 269 REELLDYYKALV-----DEYPIVSIEDPFHEEDFEGFAMITKELDI---QIVGDDLFVTNVERLRKGIEMKAANALLLK- 339 (427)
T ss_dssp HHHHHHHHHHHH-----HHSCEEEEECCSCTTCHHHHHHHHHHSSS---EEEESTTTTTCHHHHHHHHHHTCCSEEEEC-
T ss_pred HHHHHHHHHHHH-----hhCCCcEEEcCCChhhHHHHHHHHhhCCC---eEEeCccccCCHHHHHHHHHhCCCCEEEEc-
Confidence 346666654333 23347899999988888888888776443 33334433335888888887654 444443
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
+ +..|.+....+++++|+++|+.+++
T Consensus 340 ~-~~~GGitea~~ia~lA~~~g~~~~~ 365 (427)
T 2pa6_A 340 V-NQIGTLSEAVDAAQLAFRNGYGVVV 365 (427)
T ss_dssp H-HHHCSHHHHHHHHHHHHTTTCEEEE
T ss_pred c-cccCCHHHHHHHHHHHHHcCCeEEE
Confidence 2 3468888888999999999998876
No 268
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=30.67 E-value=71 Score=27.12 Aligned_cols=34 Identities=6% Similarity=0.008 Sum_probs=27.5
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+..++.+-. |..|......++.++|++||+.++
T Consensus 178 ~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~i 211 (227)
T 1snn_A 178 VPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYL 211 (227)
T ss_dssp CSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEE
T ss_pred CceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEE
Confidence 4555555555 677999999999999999998877
No 269
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=30.43 E-value=1.9e+02 Score=25.07 Aligned_cols=84 Identities=7% Similarity=0.033 Sum_probs=53.2
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc----HHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP----IEEIV 231 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----l~~i~ 231 (458)
.-|.+++++.-+.. ...+...++..|.+++.+-.+.. +.+.+++.......++++......||...+ +.++.
T Consensus 116 GvdG~IipDLP~eE-~~~~~~~~~~~Gl~~I~lvaP~t---~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v 191 (252)
T 3tha_A 116 GICALIVPELSFEE-SDDLIKECERYNIALITLVSVTT---PKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKV 191 (252)
T ss_dssp TEEEEECTTCCGGG-CHHHHHHHHHTTCEECEEEETTS---CHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHH-HHHHHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHH
Confidence 34789999876664 34678888999998776432211 345666655555566666665567888765 34455
Q ss_pred HHHHhc-CcEEEE
Q 012718 232 HWSHDV-GAKVLV 243 (458)
Q Consensus 232 ~l~~~~-~~~viv 243 (458)
+..|++ ++++++
T Consensus 192 ~~vr~~~~~Pv~v 204 (252)
T 3tha_A 192 KEIRSFTNLPIFV 204 (252)
T ss_dssp HHHHTTCCSCEEE
T ss_pred HHHHHhcCCcEEE
Confidence 555554 566665
No 270
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=30.40 E-value=1.3e+02 Score=24.52 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=27.9
Q ss_pred HHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 200 KLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 200 ~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+...++++.-+|+++. +|.-..+-++++.++++|+.+|
T Consensus 106 ~~~~~~~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI 144 (199)
T 1x92_A 106 QIRALGQPGDVLLAIST----SGNSANVIQAIQAAHDREMLVV 144 (199)
T ss_dssp HHHHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEE
T ss_pred HHHhCCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEE
Confidence 34445666666677765 5777778888899999997655
No 271
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=29.13 E-value=29 Score=33.12 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=28.2
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
.+....|...+++++++-||++|+-||+|.+.-
T Consensus 56 ~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 56 ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 345567888889999999999999999999954
No 272
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=28.74 E-value=93 Score=28.44 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=10.7
Q ss_pred HHHcCCeEEEEeCCC
Q 012718 178 AQKTGANLKFLNLND 192 (458)
Q Consensus 178 a~~~g~~~~~v~~~~ 192 (458)
.+..|++++.+++.+
T Consensus 63 lk~~G~N~VRip~~~ 77 (345)
T 3jug_A 63 IAEQGANTIRIVLSD 77 (345)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHHcCCCEEEEEecC
Confidence 345688888888753
No 273
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=28.61 E-value=55 Score=28.31 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE-Eec
Q 012718 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL-VDA 245 (458)
Q Consensus 169 s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi-vD~ 245 (458)
.....+...++..|.++.......+.....+.++..+..++..|++..... ....+.+++.|+.++ +|.
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHHHHHHHHCCCCEEEEec
Confidence 344456667788899998887654321112335555666777777655422 556666777887654 443
No 274
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=28.09 E-value=1.4e+02 Score=26.37 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHh---hcC-CceEEEEecccCcCcccccHHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM---LSR-KTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~---l~~-~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
++..+++..+.| ..+++++|.+...+... +....+..|.+. +++ ++++|+++...++ +-+.
T Consensus 189 ~~~~~v~~H~af-------~Yf~~~yGl~~~~~~~~-~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~ 253 (291)
T 1pq4_A 189 PQRKFIVFHPSW-------AYFARDYNLVQIPIEVE-GQEPSAQELKQLIDTAKENNLTMVFGETQFST-------KSSE 253 (291)
T ss_dssp SCCEEEESSCCC-------HHHHHHTTCEEEESCBT-TBCCCHHHHHHHHHHHHTTTCCEEEEETTSCC-------HHHH
T ss_pred CCCEEEEECCch-------HHHHHHCCCEEeecccC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHH
Confidence 466788776643 45678889988766432 344555555554 443 6788877655332 2233
Q ss_pred HHHHhcCcEEE
Q 012718 232 HWSHDVGAKVL 242 (458)
Q Consensus 232 ~l~~~~~~~vi 242 (458)
.++++.|+.++
T Consensus 254 ~ia~~~g~~v~ 264 (291)
T 1pq4_A 254 AIAAEIGAGVE 264 (291)
T ss_dssp HHHHHHTCEEE
T ss_pred HHHHHcCCeEE
Confidence 45777787654
No 275
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=28.04 E-value=2.6e+02 Score=26.68 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=54.4
Q ss_pred HHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCH
Q 012718 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDL 198 (458)
Q Consensus 119 ~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~ 198 (458)
.++..++..+.+.|+=...|+.+..+.+... ...+..|+..+..-.. ......-+++.|..+..+. . |.
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~----~~~~g~V~AvDis~~~-l~~a~~n~~r~G~~v~~~~-~-----Da 160 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAAR----MGGKGLLLANEVDGKR-VRGLLENVERWGAPLAVTQ-A-----PP 160 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHH----TTTCSEEEEECSCHHH-HHHHHHHHHHHCCCCEEEC-S-----CH
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHh----CCCCCEEEEEECCHHH-HHHHHHHHHHcCCeEEEEE-C-----CH
Confidence 3455666665545554555555555555443 3333466666654442 2234445566787733332 2 56
Q ss_pred HHHHHhhcCCceEEEEecccCcCccc
Q 012718 199 DKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 199 ~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
..+.........+|+++.|++.+|.+
T Consensus 161 ~~l~~~~~~~FD~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 161 RALAEAFGTYFHRVLLDAPCSGEGMF 186 (464)
T ss_dssp HHHHHHHCSCEEEEEEECCCCCGGGT
T ss_pred HHhhhhccccCCEEEECCCcCCcccc
Confidence 66655455566899999999888865
No 276
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=27.37 E-value=72 Score=28.41 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE-Eec
Q 012718 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL-VDA 245 (458)
Q Consensus 169 s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi-vD~ 245 (458)
.....+...++..|.++.......+..-..+.++..+..++..|++..... .......+.+++.|++++ +|.
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~-----~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 20 DDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG-----TTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG-----GGGHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc-----hhHHHHHHHHHHCCCCEEEECC
Confidence 445566777888899988877443221123345666666887777654421 124556677788898766 443
No 277
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.29 E-value=4e+02 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.4
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.-||+-+...+.+||.++++..++.-+-+
T Consensus 398 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~ 426 (443)
T 3dm5_A 398 IKRIARGSGTSTKDVKELLDQYRQMKKLF 426 (443)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 45787777789999999998887765433
No 278
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=26.56 E-value=1.9e+02 Score=21.63 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHhcCcEEE
Q 012718 224 ILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vi 242 (458)
..++.+|.++++++|+.++
T Consensus 60 ~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 60 PVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp SCCHHHHHHHHHTTTCEEE
T ss_pred hHHHHHHHHHHHHcCCEEE
Confidence 3679999999999998775
No 279
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=26.31 E-value=1.1e+02 Score=18.49 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.1
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+|||+.. -+..+-+++...|-+++.++
T Consensus 3 rvrisita-rtkkeaekfaailikvfael 30 (62)
T 2gjh_A 3 RVRISITA-RTKKEAEKFAAILIKVFAEL 30 (62)
T ss_dssp EEEEEEEC-SSHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEe-cchhHHHHHHHHHHHHHHHh
Confidence 58999886 68889999999888887664
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=26.18 E-value=2.6e+02 Score=24.81 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=28.5
Q ss_pred CCHHHHHHhhcC-----Cce--EEEEecccCcCccc--cc--------HHHHHHHHHhcCcEEEE
Q 012718 196 PDLDKLKEMLSR-----KTK--LVVIHHISNMLASI--LP--------IEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 196 ~d~~~l~~~l~~-----~~~--~v~~~~~~n~tG~~--~~--------l~~i~~l~~~~~~~viv 243 (458)
.+++++.+.+.. +++ +|++++.+...... .+ ...|..+|+++|+.+++
T Consensus 162 ~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~ 226 (315)
T 3bh0_A 162 QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 226 (315)
T ss_dssp CBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 466666554432 456 88888876554321 11 34567777888876664
No 281
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=26.00 E-value=2e+02 Score=22.64 Aligned_cols=70 Identities=9% Similarity=0.131 Sum_probs=38.4
Q ss_pred HHHHHHHcCCeEEEEeCCC--CC-----CCCHHHHHHhhcCC---ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 174 WQLVAQKTGANLKFLNLND--DE-----SPDLDKLKEMLSRK---TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 174 ~~~~a~~~g~~~~~v~~~~--~~-----~~d~~~l~~~l~~~---~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
+..+|...|.++..+-.+. .| ...+..+.+.+..+ ...|++...+-.+=...++..+.+.++++|+.|+.
T Consensus 31 l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv~l~~ 110 (167)
T 3guv_A 31 MKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLIC 110 (167)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCCCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCCCEEEE
Confidence 4455666677764332221 22 22233444444444 46777777655555555566677777888876663
No 282
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=25.90 E-value=1.4e+02 Score=25.11 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+|+++..+.+.. ..|.+|++..+.-. +.+.-..++.+.|.++..+++.. .+++.+.+..+..+|+++-.
T Consensus 42 TT~lL~~a~r~~-----~~g~kVli~k~~~d-~R~ge~~i~s~~g~~~~a~~~~~-----~~~~~~~~~~~~dvViIDEa 110 (214)
T 2j9r_A 42 SEELIRRVRRTQ-----FAKQHAIVFKPCID-NRYSEEDVVSHNGLKVKAVPVSA-----SKDIFKHITEEMDVIAIDEV 110 (214)
T ss_dssp HHHHHHHHHHHH-----HTTCCEEEEECC------------------CCEEECSS-----GGGGGGGCCSSCCEEEECCG
T ss_pred HHHHHHHHHHHH-----HCCCEEEEEEeccC-CcchHHHHHhhcCCeeEEeecCC-----HHHHHHHHhcCCCEEEEECc
Confidence 456666666654 34556666544332 11122334455566655555532 23343444445678888887
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEecc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a 246 (458)
+..+-.. ++.+.+++. .|+.||+=+-
T Consensus 111 QF~~~~~--V~~l~~l~~-~~~~Vi~~Gl 136 (214)
T 2j9r_A 111 QFFDGDI--VEVVQVLAN-RGYRVIVAGL 136 (214)
T ss_dssp GGSCTTH--HHHHHHHHH-TTCEEEEEEC
T ss_pred ccCCHHH--HHHHHHHhh-CCCEEEEEec
Confidence 6633211 334444443 4888876444
No 283
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=25.84 E-value=1.2e+02 Score=27.70 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=20.5
Q ss_pred CCCCCCcEEEeC-C----hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCcc
Q 012718 125 NASDSGEIVFTK-N----ATEAINLVAYSWGLSNLKSGDEVILTVAEHHS 169 (458)
Q Consensus 125 g~~~~~~v~~t~-g----~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s 169 (458)
|..+.+-+++++ . ++-+++++.... ..|..|++.+.+...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSAL-----NDDRGVAVFSLEMSA 86 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHH-----HTTCEEEEEESSSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeCCCCH
Confidence 666653334431 1 244555555443 245677777666653
No 284
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=25.34 E-value=73 Score=27.73 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=41.4
Q ss_pred chHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE-Eec
Q 012718 170 AIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL-VDA 245 (458)
Q Consensus 170 ~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi-vD~ 245 (458)
....+...++..|.++.......+..-..+.++..+..++..|++..... .....+.+.+++.|+.++ +|.
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-----~~~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 26 LINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDD-----VYIGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT-----TTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-----HHHHHHHHHHHHcCCCEEEecC
Confidence 44456667888899998887653322122445566667777766643311 123355566677787655 443
No 285
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=25.11 E-value=2.9e+02 Score=26.14 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=28.2
Q ss_pred CCHHHHHHhhcC-----Cce--EEEEecccCcCccc--cc--------HHHHHHHHHhcCcEEEE
Q 012718 196 PDLDKLKEMLSR-----KTK--LVVIHHISNMLASI--LP--------IEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 196 ~d~~~l~~~l~~-----~~~--~v~~~~~~n~tG~~--~~--------l~~i~~l~~~~~~~viv 243 (458)
++++++.+.+.. +++ +|+++..+...+.. .+ ...|..+|+++|+.+++
T Consensus 291 ~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 355 (444)
T 3bgw_A 291 QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 355 (444)
T ss_dssp CBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 466666554432 566 88888776554322 11 23566777788876664
No 286
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=24.98 E-value=42 Score=32.37 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=27.4
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+....|...+++++++.||++|+-||+|.+.-
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 102 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVLN 102 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 44456888889999999999999999999954
No 287
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=24.94 E-value=64 Score=27.86 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHHhhcCCceEEEEecccCc---------Cccccc-HHHHHHHHHhcCcEEEEecc
Q 012718 198 LDKLKEMLSRKTKLVVIHHISNM---------LASILP-IEEIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 198 ~~~l~~~l~~~~~~v~~~~~~n~---------tG~~~~-l~~i~~l~~~~~~~vivD~a 246 (458)
++.+++++..++.+|.+=....+ ...... .+++.++|+++|+.+|+++-
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~ 104 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDR 104 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCH
Confidence 45667777777777777665422 112222 46788999999998888553
No 288
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=24.84 E-value=39 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q 012718 227 IEEIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a 246 (458)
-.+|.++|+++|+.|+.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 46899999999999999976
No 289
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=24.79 E-value=3.8e+02 Score=24.01 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=53.3
Q ss_pred cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcC--CCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 131 EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV--AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 131 ~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~--~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
.+++|.|.+.....++.... ...+.-+|++.+ |.+.+... ...+ ...|+++..++- ..+...+. +
T Consensus 123 ~~ILTh~~S~tv~~~l~~A~--~~gk~~~V~v~EsrP~~qG~~l-a~~L-~~~gI~vtli~D--------sa~~~~m~-~ 189 (315)
T 3ecs_A 123 ATILTHAYSRVVLRVLEAAV--AAKKRFSVYVTESQPDLSGKKM-AKAL-CHLNVPVTVVLD--------AAVGYIME-K 189 (315)
T ss_dssp EEEEECSCCHHHHHHHHHHH--TTTCCEEEEEECCTTTTHHHHH-HHHH-HTTTCCEEEECG--------GGHHHHGG-G
T ss_pred CEEEEcCCcHHHHHHHHHHH--HcCCeEEEEEecCCCcchHHHH-HHHH-HHcCCCEEEEeh--------hHHHHHHH-h
Confidence 67778655554444444331 112223566554 33444433 2233 345899888862 22333343 3
Q ss_pred c-eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEE
Q 012718 209 T-KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 209 ~-~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~viv 243 (458)
+ ++++-...-...|.+.+ --.++-+|+.+|++++|
T Consensus 190 vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V 228 (315)
T 3ecs_A 190 ADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYV 228 (315)
T ss_dssp CSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred CCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEE
Confidence 4 44443333345566665 34677788999988876
No 290
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=24.77 E-value=3.3e+02 Score=25.93 Aligned_cols=95 Identities=9% Similarity=-0.064 Sum_probs=53.3
Q ss_pred HHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-EEEEeCCCCCCCC
Q 012718 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLNDDESPD 197 (458)
Q Consensus 119 ~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-~~~v~~~~~~~~d 197 (458)
.++..++..+.+.|+=...|+.+..+.+... ...+..|+..+..-.. ......-+++.|.. +..+.. |
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~----~~~~g~V~AvDis~~r-l~~~~~n~~r~g~~nv~v~~~------D 164 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQ----MKGKGLLVTNEIFPKR-AKILSENIERWGVSNAIVTNH------A 164 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHH----HTTCSEEEEECSSHHH-HHHHHHHHHHHTCSSEEEECC------C
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHH----cCCCCEEEEEeCCHHH-HHHHHHHHHHcCCCceEEEeC------C
Confidence 4455666665545544444444444444333 2333466666654443 22344445666765 333322 5
Q ss_pred HHHHHHhhcCCceEEEEecccCcCccc
Q 012718 198 LDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 198 ~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
...+.......-..|+++.|++.+|.+
T Consensus 165 a~~l~~~~~~~FD~Il~DaPCSg~G~~ 191 (456)
T 3m4x_A 165 PAELVPHFSGFFDRIVVDAPCSGEGMF 191 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECCCCCGGGT
T ss_pred HHHhhhhccccCCEEEECCCCCCcccc
Confidence 666655455566899999998888875
No 291
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=24.76 E-value=2.6e+02 Score=24.41 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=30.9
Q ss_pred cCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc-cCcCcccccHHHHHHHHHhcC-cE
Q 012718 181 TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI-SNMLASILPIEEIVHWSHDVG-AK 240 (458)
Q Consensus 181 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~-~n~tG~~~~l~~i~~l~~~~~-~~ 240 (458)
.|++++..++. |.+.++++++. ...|+.... ......+.....+.+.|++.| +-
T Consensus 55 ~~~~~~~~D~~-----d~~~l~~~~~~-~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~ 110 (313)
T 1qyd_A 55 LGAKLIEASLD-----DHQRLVDALKQ-VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIK 110 (313)
T ss_dssp TTCEEECCCSS-----CHHHHHHHHTT-CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCS
T ss_pred CCeEEEeCCCC-----CHHHHHHHHhC-CCEEEECCccccchhhHHHHHHHHHHHHhcCCCc
Confidence 35555544443 77888888864 444443332 211112334678889999887 63
No 292
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=24.74 E-value=2.4e+02 Score=26.01 Aligned_cols=82 Identities=4% Similarity=0.039 Sum_probs=55.8
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWS 234 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l~ 234 (458)
+-+..++.+|........+..+.+..++.+. .++ ...+++.+++.+..+. .+|.+. -+..|-+....+++++|
T Consensus 224 ~~~i~~iE~P~~~~~~~~~~~l~~~~~ipIa---~dE-~~~~~~~~~~~i~~~~~d~v~ik--~~~~GGit~~~~i~~~A 297 (392)
T 2poz_A 224 ELDICFVEEPCDPFDNGALKVISEQIPLPIA---VGE-RVYTRFGFRKIFELQACGIIQPD--IGTAGGLMETKKICAMA 297 (392)
T ss_dssp GGCEEEEECCSCTTCHHHHHHHHHHCSSCEE---ECT-TCCHHHHHHHHHTTTCCSEECCC--TTTSSCHHHHHHHHHHH
T ss_pred hcCCCEEECCCCcccHHHHHHHHhhCCCCEE---ecC-CcCCHHHHHHHHHcCCCCEEecC--ccccCCHHHHHHHHHHH
Confidence 3345678888776666677777666543322 222 2236788888887654 454443 25678888899999999
Q ss_pred HhcCcEEEE
Q 012718 235 HDVGAKVLV 243 (458)
Q Consensus 235 ~~~~~~viv 243 (458)
+++|+.+++
T Consensus 298 ~~~g~~~~~ 306 (392)
T 2poz_A 298 EAYNMRVAP 306 (392)
T ss_dssp HTTTCEECC
T ss_pred HHcCCeEec
Confidence 999998887
No 293
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=24.57 E-value=3.6e+02 Score=25.80 Aligned_cols=48 Identities=17% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCHHHHHHhhc-----CCceEEEEecccCcCcccc--c--------HHHHHHHHHhcCcEEEE
Q 012718 196 PDLDKLKEMLS-----RKTKLVVIHHISNMLASIL--P--------IEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 196 ~d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~--~--------l~~i~~l~~~~~~~viv 243 (458)
.+++.+.+.+. .++++|++++.+......- + +..|..+|+++|+.|++
T Consensus 337 ~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~ 399 (503)
T 1q57_A 337 AETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV 399 (503)
T ss_dssp -CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEE
Confidence 46666655543 2678999988866543211 1 34677788899986664
No 294
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=24.57 E-value=63 Score=31.73 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCceEEEEecccCcCccccc-HHHHHHHHHhcCcEEEEec
Q 012718 198 LDKLKEMLSRKTKLVVIHHISNMLASILP-IEEIVHWSHDVGAKVLVDA 245 (458)
Q Consensus 198 ~~~l~~~l~~~~~~v~~~~~~n~tG~~~~-l~~i~~l~~~~~~~vivD~ 245 (458)
.+.+++++..+..+|.+-..+........ .+++.++|+++|+.+|++.
T Consensus 28 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND 76 (540)
T 3nl6_A 28 YGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIIND 76 (540)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECS
T ss_pred HHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeC
Confidence 35667777777777777666555554444 5678888999998888755
No 295
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=24.55 E-value=3.5e+02 Score=23.59 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc--c--HHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL--P--IEEIVH 232 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~--~--l~~i~~ 232 (458)
-|.+++++..+.. ...+...++..|.+++.+-.+.. +.+.+++.......+|++......||... + +.++.+
T Consensus 126 vdGvIipDlp~ee-~~~~~~~~~~~gl~~I~lvap~t---~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~ 201 (271)
T 3nav_A 126 VDSVLIADVPTNE-SQPFVAAAEKFGIQPIFIAPPTA---SDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLE 201 (271)
T ss_dssp CCEEEETTSCGGG-CHHHHHHHHHTTCEEEEEECTTC---CHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHH
T ss_pred CCEEEECCCCHHH-HHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHH
Confidence 4788898877754 34678888999998775543321 34556555554555666655556688754 2 455555
Q ss_pred HHHhc-CcEEEE
Q 012718 233 WSHDV-GAKVLV 243 (458)
Q Consensus 233 l~~~~-~~~viv 243 (458)
.++++ ++++++
T Consensus 202 ~vr~~~~~Pv~v 213 (271)
T 3nav_A 202 RLQQFDAPPALL 213 (271)
T ss_dssp HHHHTTCCCEEE
T ss_pred HHHHhcCCCEEE
Confidence 55554 566665
No 296
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.48 E-value=97 Score=27.75 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcE-EEEec
Q 012718 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAK-VLVDA 245 (458)
Q Consensus 169 s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~-vivD~ 245 (458)
.....+...++..|.++.......+.....+.++..+..++..|++.... .+-+.+.+++++.+++ |++|.
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~------~~~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF------LSVDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS------SCHHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC------CChHHHHHHHHcCCCCEEEEcC
Confidence 34455667778889998887754322112224455566677777664321 1235677888888875 44554
No 297
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=24.46 E-value=43 Score=31.86 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=27.1
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+....|...+++++++-||++|+-||+|.+.-
T Consensus 79 id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 110 (435)
T 1mxg_A 79 VETRFGSKEELVRLIQTAHAYGIKVIADVVIN 110 (435)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 34456888889999999999999999999954
No 298
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=24.40 E-value=43 Score=32.23 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=27.2
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+....|...+++++++-||++|+.||+|.+.-
T Consensus 73 idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 104 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSNDINVYGDVVMN 104 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34447888889999999999999999999954
No 299
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=24.37 E-value=2.8e+02 Score=24.26 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=49.7
Q ss_pred cEEEeC-ChhHHHHHHHHHcCCCCCCCCCEEE-EcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 131 EIVFTK-NATEAINLVAYSWGLSNLKSGDEVI-LTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 131 ~v~~t~-g~t~a~~~~~~~l~~~~~~~g~~vl-~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
.|++|+ +|..+-.++-..+ +.|..|. +....- .....+..+ ...|++++..++. |.+.+.++++.
T Consensus 13 ~ilVtGatG~iG~~l~~~L~-----~~g~~V~~l~R~~~-~~~~~~~~l-~~~~v~~v~~Dl~-----d~~~l~~a~~~- 79 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSL-----KLGHPTYVFTRPNS-SKTTLLDEF-QSLGAIIVKGELD-----EHEKLVELMKK- 79 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHH-----HTTCCEEEEECTTC-SCHHHHHHH-HHTTCEEEECCTT-----CHHHHHHHHTT-
T ss_pred eEEEECCCchHHHHHHHHHH-----HCCCcEEEEECCCC-chhhHHHHh-hcCCCEEEEecCC-----CHHHHHHHHcC-
Confidence 566665 4555555554433 2344443 333221 121112222 2347777666554 77889888864
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcC-cEEEE
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVG-AKVLV 243 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~-~~viv 243 (458)
...|+...... .+.....+.+.|++.| +--++
T Consensus 80 ~d~vi~~a~~~---~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 80 VDVVISALAFP---QILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp CSEEEECCCGG---GSTTHHHHHHHHHHHCCCCEEE
T ss_pred CCEEEECCchh---hhHHHHHHHHHHHhcCCCCEEE
Confidence 44444333211 1333577888888887 64333
No 300
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=24.26 E-value=44 Score=32.26 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=27.3
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+....|...+++++++.||++|+-||+|.+.-
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 106 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMN 106 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44457888889999999999999999999954
No 301
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=24.24 E-value=3.3e+02 Score=27.22 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=14.5
Q ss_pred HHHHHHhhcC-CceEEEEecccCcCcccccHHH
Q 012718 198 LDKLKEMLSR-KTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 198 ~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
.+.+...+.. ++++++........|...++..
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~ 207 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKR 207 (663)
T ss_dssp HHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHH
T ss_pred HHHHHHHHHhcCCeEEEEccccccCCcccchHH
Confidence 3444444433 4455555444444444444443
No 302
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=24.24 E-value=44 Score=31.73 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=26.6
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
....|...+++++++.||++|+.||+|.+.-
T Consensus 63 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 93 (441)
T 1lwj_A 63 KAEYGSEREFKEMIEAFHDSGIKVVLDLPIH 93 (441)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3447888889999999999999999999954
No 303
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=24.21 E-value=92 Score=21.24 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=34.2
Q ss_pred ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 391 HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 391 ~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+.+.+...|... |+....- ....+.|+-+++|.+.++.+.+++.|++
T Consensus 22 ~A~~l~~~L~~~-G~~a~i~-----------~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 22 QAETVRAQLAFE-GFDSKIT-----------TNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp HHHHHHHHHHHH-TCCEEEE-----------ECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCeEEE-----------eCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 456778888876 7633210 1145789999999999999999999886
No 304
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=24.14 E-value=1.3e+02 Score=26.01 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE-Eec
Q 012718 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL-VDA 245 (458)
Q Consensus 169 s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi-vD~ 245 (458)
.....+...++..|.++.......+..-..+.++..+..++..|++...... ...+..++.+.+++.|+.++ +|.
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSA--LQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTT--SCCTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccccc--ccCCcHHHHHHHHhcCCCEEEEec
Confidence 4455666778888999988876533211223455556677877776544211 11123345566677787655 443
No 305
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=24.01 E-value=36 Score=24.61 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q 012718 227 IEEIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a 246 (458)
-++|.++|+++|+.++.|..
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 56899999999999999976
No 306
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=23.85 E-value=45 Score=32.52 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=27.2
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+....|...+++++++.||++|+-||+|.+.-
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 105 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHAAGMQVYADVVFD 105 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 34456888889999999999999999999954
No 307
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=23.79 E-value=3.2e+02 Score=23.83 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=42.3
Q ss_pred cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---
Q 012718 131 EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--- 207 (458)
Q Consensus 131 ~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--- 207 (458)
-+++|++++.-=..+...| .+.|-+|++.+..- ......++..|.++..+..|-. |.+++++.++.
T Consensus 31 valVTGas~GIG~aiA~~l----a~~Ga~V~i~~r~~----~~l~~~~~~~g~~~~~~~~Dv~---~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRF----VAEGARVFITGRRK----DVLDAAIAEIGGGAVGIQADSA---NLAELDRLYEKVKA 99 (273)
T ss_dssp EEEEESCSSHHHHHHHHHH----HHTTCEEEEEESCH----HHHHHHHHHHCTTCEEEECCTT---CHHHHHHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHH----HHCCCEEEEEECCH----HHHHHHHHHcCCCeEEEEecCC---CHHHHHHHHHHHHH
Confidence 4455554443333334444 46777777765432 2445555556777776665422 45555554432
Q ss_pred ---CceEEEEecccCcCccc
Q 012718 208 ---KTKLVVIHHISNMLASI 224 (458)
Q Consensus 208 ---~~~~v~~~~~~n~tG~~ 224 (458)
+..+++-+...++.+-+
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~ 119 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPL 119 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCT
T ss_pred HcCCCCEEEECCCCCCCCCh
Confidence 44555555544444433
No 308
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=23.70 E-value=1.1e+02 Score=28.20 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCCCCcE-EEeCC----------hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCcc
Q 012718 113 YELARKKVAAFINASDSGEI-VFTKN----------ATEAINLVAYSWGLSNLKSGDEVILTVAEHHS 169 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v-~~t~g----------~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s 169 (458)
.+.+++.|.+ +|.+.. +| +++.. +...+..++.-+. ...++||.+++---+|..
T Consensus 116 A~~m~~~L~~-~GF~~~-~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~-~~a~pgD~l~fyFSGHG~ 180 (367)
T 4af8_A 116 VKQMLATLQK-RGLPIN-EAVILVDEDNFPGRTDQPTRDNIVRYMAWLV-KDAKPGDVLFFHYSGHGT 180 (367)
T ss_dssp HHHHHHHHHH-TTCCCS-EEEEEECCTTCTTCCBCCCHHHHHHHHHHHH-HTCCTTCEEEEEEESCEE
T ss_pred HHHHHHHHHH-cCCCch-heEEecccccccccccCCCHHHHHHHHHHHH-HhCCCCCEEEEEEcCCcC
Confidence 3345555544 577654 44 45532 3345555554442 246789988887777764
No 309
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.65 E-value=2e+02 Score=25.88 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCCCCCEEEEcCCCCcc------chHHHHHHHHHcCCeEEEEeCCCC------CC--CCHHHHHHhhc-CCceEEEEec
Q 012718 152 SNLKSGDEVILTVAEHHS------AIVPWQLVAQKTGANLKFLNLNDD------ES--PDLDKLKEMLS-RKTKLVVIHH 216 (458)
Q Consensus 152 ~~~~~g~~vl~~~~~~~s------~~~~~~~~a~~~g~~~~~v~~~~~------~~--~d~~~l~~~l~-~~~~~v~~~~ 216 (458)
+.+++||+|-+..|+... .+.......+..|.+|+.-+.-.. +. .-.++|.+++. +.+++|+...
T Consensus 7 ~~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 7 AKLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 358999999888877542 122233344667999987664321 11 12345555554 4778998887
Q ss_pred ccCcCcccccH
Q 012718 217 ISNMLASILPI 227 (458)
Q Consensus 217 ~~n~tG~~~~l 227 (458)
.-.-+-.++|.
T Consensus 87 GG~g~~rlL~~ 97 (327)
T 4h1h_A 87 GGFNSNQLLPY 97 (327)
T ss_dssp CCSCGGGGGGG
T ss_pred CchhHHHHhhh
Confidence 77777777773
No 310
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=23.45 E-value=2.3e+02 Score=26.44 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=56.1
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWS 234 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l~ 234 (458)
+-+..++.+|..+.....+..+.+..+..+. .++. ..+++.+++.+..+. .+|.+. + +..|-+....+++++|
T Consensus 243 ~~~i~~iE~P~~~~~~~~~~~l~~~~~iPIa---~dE~-~~~~~~~~~~i~~~~~d~v~ik-~-~~~GGit~~~~ia~~A 316 (410)
T 2gl5_A 243 KYRIFLYEEPIHPLNSDNMQKVSRSTTIPIA---TGER-SYTRWGYRELLEKQSIAVAQPD-L-CLCGGITEGKKICDYA 316 (410)
T ss_dssp GGCEEEEECSSCSSCHHHHHHHHHHCSSCEE---ECTT-CCTTHHHHHHHHTTCCSEECCC-T-TTTTHHHHHHHHHHHH
T ss_pred hcCCCeEECCCChhhHHHHHHHHhhCCCCEE---ecCC-cCCHHHHHHHHHcCCCCEEecC-c-cccCCHHHHHHHHHHH
Confidence 3345678888776666677777666543322 2222 236788888887654 444443 2 5578888899999999
Q ss_pred HhcCcEEEEe
Q 012718 235 HDVGAKVLVD 244 (458)
Q Consensus 235 ~~~~~~vivD 244 (458)
+++|+.+++=
T Consensus 317 ~~~gi~~~~h 326 (410)
T 2gl5_A 317 NIYDTTVQVH 326 (410)
T ss_dssp HTTTCEECCC
T ss_pred HHcCCeEeec
Confidence 9999988773
No 311
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=23.39 E-value=1.3e+02 Score=26.80 Aligned_cols=71 Identities=11% Similarity=0.246 Sum_probs=44.3
Q ss_pred CEEEEcCCCCccchHHHHHHHHHcCCeEEEEe-CCCCCCCCHHHHHHhh---c-CCceEEEEecccCcCcccccHHHHHH
Q 012718 158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLN-LNDDESPDLDKLKEML---S-RKTKLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 158 ~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~-~~~~~~~d~~~l~~~l---~-~~~~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
..+++..+. |..+++++|.+...+. +.++.+..+.+|.+.+ + .++++|+++...++ +.+..
T Consensus 184 ~~~v~~H~a-------f~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~ 249 (294)
T 3hh8_A 184 KLIVTSEGC-------FKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDR-------RPMET 249 (294)
T ss_dssp CCEEEEESC-------CHHHHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEETTSCS-------HHHHH
T ss_pred cEEEEECCh-------HHHHHHHcCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHHHH
Confidence 456666553 3456778899987764 3344555666655544 3 36778887665332 34556
Q ss_pred HHHhcCcEEE
Q 012718 233 WSHDVGAKVL 242 (458)
Q Consensus 233 l~~~~~~~vi 242 (458)
++++.|+.++
T Consensus 250 ia~~~g~~v~ 259 (294)
T 3hh8_A 250 VSKDSGIPIY 259 (294)
T ss_dssp HHHHHCCCEE
T ss_pred HHHHhCCcEE
Confidence 7888888765
No 312
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=23.36 E-value=48 Score=31.12 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=26.3
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
...|...+++++++-||++|+-||+|.+.-
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 92 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIVIN 92 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 446878889999999999999999999965
No 313
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=23.33 E-value=1.3e+02 Score=27.20 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q 012718 227 IEEIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a 246 (458)
+++++++|+++|+.+|+|--
T Consensus 107 ld~~v~~a~~~Gi~VilD~H 126 (327)
T 3pzt_A 107 VKEAVEAAKELGIYVIIDWH 126 (327)
T ss_dssp HHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEec
Confidence 78888999999999998853
No 314
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.93 E-value=1e+02 Score=27.14 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe-CCCCCCCCHHHHHH---hhcC-CceEEEEecccCcCcccccHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN-LNDDESPDLDKLKE---MLSR-KTKLVVIHHISNMLASILPIEEI 230 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~-~~~~~~~d~~~l~~---~l~~-~~~~v~~~~~~n~tG~~~~l~~i 230 (458)
++..+++..+. |..+++++|.+...+. ..++.+..+.+|.+ .+++ ++++|+++...++ +.+
T Consensus 176 ~~~~~v~~H~a-------f~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~ 241 (284)
T 3cx3_A 176 TQKTFVTQHTA-------FSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASS-------KVA 241 (284)
T ss_dssp SCCCEEEEESC-------CHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCC-------HHH
T ss_pred CCCEEEEECCc-------hHHHHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHH
Confidence 45567776653 3556788899887665 33344444455444 4443 6777777665332 334
Q ss_pred HHHHHhcCcEEE
Q 012718 231 VHWSHDVGAKVL 242 (458)
Q Consensus 231 ~~l~~~~~~~vi 242 (458)
..++++.|+.++
T Consensus 242 ~~ia~~~g~~v~ 253 (284)
T 3cx3_A 242 ETLVKSTGVGLK 253 (284)
T ss_dssp HHHHSSSSCCEE
T ss_pred HHHHHHcCCeEE
Confidence 455777777654
No 315
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=22.84 E-value=40 Score=24.47 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q 012718 227 IEEIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a 246 (458)
-.+|.++|+++|+.|+.|-.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCeecCHH
Confidence 46899999999999999875
No 316
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A
Probab=22.71 E-value=1.6e+02 Score=27.98 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=66.3
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~ 217 (458)
.+++..+-... ++-+..++.+|..+.....|..+.+..|..+ .|-.++....++..+++.+..+. .+|.+. +
T Consensus 282 ~eai~~~~~l~-----~~~~i~~iEePl~~~d~~~~~~l~~~~~~~i-pIa~dE~~~~~~~~~~~~i~~~a~d~i~ik-~ 354 (444)
T 1w6t_A 282 AEQIDYLEELV-----NKYPIITIEDGMDENDWDGWKALTERLGKKV-QLVGDDFFVTNTDYLARGIQEGAANSILIK-V 354 (444)
T ss_dssp HHHHHHHHHHH-----HHSCEEEEESCSCTTCHHHHHHHHHHHTTTS-EEEESTTTTTCHHHHHHHHHHTCCSEEEEC-H
T ss_pred HHHHHHHHHHH-----HhCCcEEEECCCChhhHHHHHHHHHhhCCCC-eEEeCCcccCCHHHHHHHHHcCCCCEEEEc-c
Confidence 45555554322 1234788999998888888888887764222 22334433457888988887654 454443 2
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEe
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVD 244 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD 244 (458)
+..|.+....+++++|+++|+.+++-
T Consensus 355 -~~~GGitea~~ia~lA~~~g~~v~~~ 380 (444)
T 1w6t_A 355 -NQIGTLTETFEAIEMAKEAGYTAVVS 380 (444)
T ss_dssp -HHHCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred -cccCCHHHHHHHHHHHHHCCCeEEec
Confidence 45788888899999999999988873
No 317
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=22.60 E-value=50 Score=32.31 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=26.9
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
...|...+++++++-||++|+-||+|.+.-
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~N 116 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 557888889999999999999999999964
No 318
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.55 E-value=2.6e+02 Score=25.73 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=48.2
Q ss_pred CCCCCCCEEEEcCCCCcc------chHHHHHHHHHcCCeEEEEeCCCC------CC--CCHHHHHHhhc-CCceEEEEec
Q 012718 152 SNLKSGDEVILTVAEHHS------AIVPWQLVAQKTGANLKFLNLNDD------ES--PDLDKLKEMLS-RKTKLVVIHH 216 (458)
Q Consensus 152 ~~~~~g~~vl~~~~~~~s------~~~~~~~~a~~~g~~~~~v~~~~~------~~--~d~~~l~~~l~-~~~~~v~~~~ 216 (458)
+.+++||+|-+..|+.+. .+.......+..|.+|+.-+.... +. .-.++|.+++. +.+++|+...
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 357899999988887653 122223344567999987765421 11 12345655554 4778888888
Q ss_pred ccCcCcccccH
Q 012718 217 ISNMLASILPI 227 (458)
Q Consensus 217 ~~n~tG~~~~l 227 (458)
.-.-+-.++|.
T Consensus 118 GGyga~rlLp~ 128 (371)
T 3tla_A 118 GGDNSNSLLPF 128 (371)
T ss_dssp CCSCGGGGGGG
T ss_pred ccccHHHHHhh
Confidence 77777777773
No 319
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=22.49 E-value=1.2e+02 Score=26.62 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=42.2
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe-CCCCCCCCHHHHHHhh---cC-CceEEEEecccCcCcccccHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN-LNDDESPDLDKLKEML---SR-KTKLVVIHHISNMLASILPIEEI 230 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~-~~~~~~~d~~~l~~~l---~~-~~~~v~~~~~~n~tG~~~~l~~i 230 (458)
++..+++..+. |..+++++|.+...+. ..++....+.+|.+.+ ++ ++++|+++...+ -+-+
T Consensus 173 ~~~~~v~~H~a-------f~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~-------~~~~ 238 (284)
T 2prs_A 173 KGKGYFVFHDA-------YGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFR-------PAVV 238 (284)
T ss_dssp TTCCEEEEESC-------CHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSC-------SHHH
T ss_pred CCCeEEEECcc-------HHHHHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------hHHH
Confidence 34567776553 3456777898865543 3444555666555544 33 667777765422 2334
Q ss_pred HHHHHhcCcEEE
Q 012718 231 VHWSHDVGAKVL 242 (458)
Q Consensus 231 ~~l~~~~~~~vi 242 (458)
..++++.|+.++
T Consensus 239 ~~ia~~~g~~v~ 250 (284)
T 2prs_A 239 ESVARGTSVRMG 250 (284)
T ss_dssp HHHTTTSCCEEE
T ss_pred HHHHHHcCCeEE
Confidence 445777777664
No 320
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.47 E-value=2.6e+02 Score=21.24 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=28.5
Q ss_pred HHHHHhhc-CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 199 DKLKEMLS-RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 199 ~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
+.+..++. .++.+++++ |...|-+++.++|+++|++|+.
T Consensus 64 ~~~l~a~~~~~~~~iIlt------~g~~~~~~i~~~A~~~~ipvl~ 103 (139)
T 2ioj_A 64 DLLLTALEMPNVRCLILT------GNLEPVQLVLTKAEERGVPVIL 103 (139)
T ss_dssp HHHHHHTTCTTEEEEEEE------TTCCCCHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhCCCCcEEEEc------CCCCCCHHHHHHHHHCCCeEEE
Confidence 44455665 678888884 4455677888999999998874
No 321
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.08 E-value=1.6e+02 Score=26.19 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=41.4
Q ss_pred CCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE-Ee
Q 012718 166 EHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL-VD 244 (458)
Q Consensus 166 ~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi-vD 244 (458)
-|......+...++..|..+.......+.....+.++..+..++..|++...... +.+.+.+++.++.++ +|
T Consensus 76 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-------~~~~~~l~~~~iPvV~~~ 148 (339)
T 3h5o_A 76 VFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA-------EPFERILSQHALPVVYMM 148 (339)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC-------TTHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC-------HHHHHHHhcCCCCEEEEe
Confidence 3445556677788888999887765533221223345556667766665443211 134455667777554 45
Q ss_pred c
Q 012718 245 A 245 (458)
Q Consensus 245 ~ 245 (458)
.
T Consensus 149 ~ 149 (339)
T 3h5o_A 149 D 149 (339)
T ss_dssp S
T ss_pred e
Confidence 3
No 322
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=22.08 E-value=4.4e+02 Score=23.82 Aligned_cols=88 Identities=9% Similarity=0.129 Sum_probs=57.9
Q ss_pred CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC-ceEEEEecccCcCcccccHHHHHH
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK-TKLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
+.+-+..++.+|..+.....+..+.+..+..+ -.++. ..+.+++++.+..+ ..+|.+.. +..|-+....++++
T Consensus 206 L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPI---a~dE~-~~~~~~~~~~l~~~~~d~v~~k~--~~~GGit~~~~i~~ 279 (354)
T 3jva_A 206 LADYQIELVEQPVKRRDLEGLKYVTSQVNTTI---MADES-CFDAQDALELVKKGTVDVINIKL--MKCGGIHEALKINQ 279 (354)
T ss_dssp TTTSCEEEEECCSCTTCHHHHHHHHHHCSSEE---EESTT-CCSHHHHHHHHHHTCCSEEEECH--HHHTSHHHHHHHHH
T ss_pred HHhcCCCEEECCCChhhHHHHHHHHHhCCCCE---EEcCC-cCCHHHHHHHHHcCCCCEEEECc--hhcCCHHHHHHHHH
Confidence 34445667888877666666666666554332 22322 33778888887654 45555542 34677888899999
Q ss_pred HHHhcCcEEEEeccc
Q 012718 233 WSHDVGAKVLVDACQ 247 (458)
Q Consensus 233 l~~~~~~~vivD~a~ 247 (458)
+|+++|+.+.+-...
T Consensus 280 ~A~~~gi~~~~~~~~ 294 (354)
T 3jva_A 280 ICETAGIECMIGCMA 294 (354)
T ss_dssp HHHHTTCEEEECCCT
T ss_pred HHHHcCCeEEecCCC
Confidence 999999999875543
No 323
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=22.03 E-value=63 Score=27.12 Aligned_cols=70 Identities=7% Similarity=0.094 Sum_probs=35.7
Q ss_pred HHHHHHcCCeEEEEeCCCCCCCCH-HHHHHhhcCCceEEEEeccc---CcCcc----cccHHHHHHHHHhcCcEEEEec
Q 012718 175 QLVAQKTGANLKFLNLNDDESPDL-DKLKEMLSRKTKLVVIHHIS---NMLAS----ILPIEEIVHWSHDVGAKVLVDA 245 (458)
Q Consensus 175 ~~~a~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~~~~v~~~~~~---n~tG~----~~~l~~i~~l~~~~~~~vivD~ 245 (458)
..+++. .+.+..-|-......|+ ..+.++..++-.++=++..+ .+.|. ..+...+.++|+++|+.+++..
T Consensus 90 ~~a~~~-~vDII~Hp~~~~~~~~~~~~~a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisS 167 (212)
T 1v77_A 90 RYSIEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTS 167 (212)
T ss_dssp HHHHHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHhC-CCCEEecccccccCCCCCHHHHHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 445565 66666655433222333 23333333332344344322 12222 4456789999999998777643
No 324
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=21.85 E-value=3.4e+02 Score=22.41 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=42.9
Q ss_pred cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---
Q 012718 131 EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--- 207 (458)
Q Consensus 131 ~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--- 207 (458)
.+++|+++..-=..++..| .+.|..|++..............+.+..|.++..+..|-. |.+.+++.++.
T Consensus 4 ~vlITGas~gIG~~ia~~l----~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~ 76 (235)
T 3l77_A 4 VAVITGASRGIGEAIARAL----ARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVS---KAESVEEFSKKVLE 76 (235)
T ss_dssp EEEEESCSSHHHHHHHHHH----HHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT---CHHHHHHHCC-HHH
T ss_pred EEEEECCCcHHHHHHHHHH----HHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccC---CHHHHHHHHHHHHH
Confidence 4566655443223333334 3567777666543332211222233344677777765522 66777766653
Q ss_pred ---CceEEEEecccCcCcc
Q 012718 208 ---KTKLVVIHHISNMLAS 223 (458)
Q Consensus 208 ---~~~~v~~~~~~n~tG~ 223 (458)
+..+++........+.
T Consensus 77 ~~g~id~li~~Ag~~~~~~ 95 (235)
T 3l77_A 77 RFGDVDVVVANAGLGYFKR 95 (235)
T ss_dssp HHSSCSEEEECCCCCCCCC
T ss_pred hcCCCCEEEECCccccccC
Confidence 4566666555444443
No 325
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=21.85 E-value=51 Score=32.19 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=26.2
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
...|..-+++++++-||++|+-||.|-+.-
T Consensus 74 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 103 (549)
T 4aie_A 74 PQYGTMADMDELISKAKEHHIKIVMDLVVN 103 (549)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 346888889999999999999999999964
No 326
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=21.81 E-value=5.3e+02 Score=25.13 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=53.3
Q ss_pred CCCCCEEEEcCCCCccchHHHH---HHHHHcCCeEEEEe---CCCCCCCCHHHHHHhhcC-CceEEEEecccCcCccccc
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQ---LVAQKTGANLKFLN---LNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILP 226 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~---~~a~~~g~~~~~v~---~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~ 226 (458)
+++++.|+++....+++..... ....+.|++++... +.-.+.-|-++|...++. +++.++..|. ..-.
T Consensus 336 ~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHG-----e~~~ 410 (562)
T 3bk2_A 336 IKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHG-----EVRH 410 (562)
T ss_dssp CCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESB-----CHHH
T ss_pred CCCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEcC-----CHHH
Confidence 5789999999877777643322 22234588887543 123466688888887754 6777777664 3345
Q ss_pred HHHHHHHHHhcCc
Q 012718 227 IEEIVHWSHDVGA 239 (458)
Q Consensus 227 l~~i~~l~~~~~~ 239 (458)
+.+.++++++.|+
T Consensus 411 ~~~~~~~~~~~g~ 423 (562)
T 3bk2_A 411 QMNFKWLAESMSR 423 (562)
T ss_dssp HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCC
Confidence 6777788887764
No 327
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=21.77 E-value=1.2e+02 Score=26.97 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=39.1
Q ss_pred hHHHHHHHHHcCCeEEEE-eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 171 IVPWQLVAQKTGANLKFL-NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 171 ~~~~~~~a~~~g~~~~~v-~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
...+...++..|.++... +...+-....+.++..+..++..|++..... . .+..+.+.+++.|+++|.
T Consensus 22 ~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~-~----~~~~~~~~a~~~gipvV~ 90 (316)
T 1tjy_A 22 GNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSP-D----GLCPALKRAMQRGVKILT 90 (316)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSS-S----TTHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH-H----HHHHHHHHHHHCcCEEEE
Confidence 345566677789888765 2222111112346667777887777754321 1 134556677888987664
No 328
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.67 E-value=1.7e+02 Score=20.99 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=35.4
Q ss_pred CCCHHHHHHhhcC-CceEEEEecccCcCccccc----HHHHHHHHHhcCcE-EEEeccc
Q 012718 195 SPDLDKLKEMLSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAK-VLVDACQ 247 (458)
Q Consensus 195 ~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~-vivD~a~ 247 (458)
..+.+.+++.+.+ ++..+++-.|-|..|..-+ .++.++..++.++. ..+|+-+
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERl 95 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3366778888776 7788999989888887776 33444443333664 4578754
No 329
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.56 E-value=2.1e+02 Score=22.59 Aligned_cols=59 Identities=7% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh-cCCceEEEEecccCcCcccccHHHHHHHHHhcC
Q 012718 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEML-SRKTKLVVIHHISNMLASILPIEEIVHWSHDVG 238 (458)
Q Consensus 174 ~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~ 238 (458)
+..+.+..|.+++....+ ..++++.+.+ ..++.+|.++.... .....+.++.+.+++.+
T Consensus 38 va~~l~~~G~eVi~lG~~----~p~e~lv~aa~~~~~diV~lS~~~~--~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLR----QTPEQVAMAAVQEDVDVIGVSILNG--AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHHHTTCEEECCCSB----CCHHHHHHHHHHTTCSEEEEEESSS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCEEEECCCC----CCHHHHHHHHHhcCCCEEEEEeech--hhHHHHHHHHHHHHhcC
Confidence 344556789999877654 3566665554 45788888876533 33444777777777653
No 330
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=21.55 E-value=50 Score=31.75 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=27.3
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+....|...+++++++-||++|+-||+|.+.-
T Consensus 90 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 90 LNENYGTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp ECTTSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 34457888889999999999999999999965
No 331
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=21.50 E-value=1.2e+02 Score=22.64 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=25.6
Q ss_pred cCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc
Q 012718 181 TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 181 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~ 225 (458)
.|.++..+.+..-..+|.+.+.+.+....++++++. |.+|...
T Consensus 38 ~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~--~~~G~l~ 80 (118)
T 3ju3_A 38 EGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVES--NYTAQAA 80 (118)
T ss_dssp TTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCC--CCCCCHH
T ss_pred CCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEEC--CCCCcHH
Confidence 466666666655556677777777755445555554 3355443
No 332
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=21.49 E-value=52 Score=31.13 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.5
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
+....|..-+++++++-||++|+-||.|-+..
T Consensus 74 idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~N 105 (424)
T 2dh2_A 74 IDPNFGSKEDFDSLLQSAKKKSIRVILDLTPN 105 (424)
T ss_dssp ECGGGCCHHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34446888889999999999999999999854
No 333
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=21.38 E-value=1.6e+02 Score=25.71 Aligned_cols=124 Identities=11% Similarity=0.056 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+.++.+++.. +-+|.+ ++-+.=-......+.... |.+-+...+-.+. .-...+++ .|. ++.+.
T Consensus 73 ~egl~~l~~~~-~~~Gl~----~~te~~d~~~~~~l~~~v--------d~~kIga~~~~n~-~ll~~~a~-~~k-PV~lk 136 (262)
T 1zco_A 73 EKALRWMREAA-DEYGLV----TVTEVMDTRHVELVAKYS--------DILQIGARNSQNF-ELLKEVGK-VEN-PVLLK 136 (262)
T ss_dssp HHHHHHHHHHH-HHHTCE----EEEECCCGGGHHHHHHHC--------SEEEECGGGTTCH-HHHHHHTT-SSS-CEEEE
T ss_pred HHHHHHHHHHH-HHcCCc----EEEeeCCHHhHHHHHhhC--------CEEEECcccccCH-HHHHHHHh-cCC-cEEEe
Confidence 44455555443 556665 222232333445554432 3455554443321 12333433 443 34444
Q ss_pred CCCCCCCCHHHHHHhhc----C-CceEEEEe----cccCcCcccccHHHHHHHHHhcCcEEEEeccccCCc
Q 012718 190 LNDDESPDLDKLKEMLS----R-KTKLVVIH----HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH 251 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~----~-~~~~v~~~----~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~ 251 (458)
..-. .+++++..++. . +..++++. ..+|.+=...++..+..+.+..++.||+|..|+.|.
T Consensus 137 ~G~~--~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 137 RGMG--NTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp CCTT--CCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCS
T ss_pred cCCC--CCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCc
Confidence 2211 26677666552 2 33455544 222333344557888887777799999999999775
No 334
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=21.36 E-value=3.6e+02 Score=23.80 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=39.4
Q ss_pred cEEEeCCh-hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-C
Q 012718 131 EIVFTKNA-TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-K 208 (458)
Q Consensus 131 ~v~~t~g~-t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~ 208 (458)
.|++|+++ --+-.++ ..| .+.|..|++....-.........+....+..+..+..|- -|.+.+++.++. +
T Consensus 7 ~vlVTGatG~iG~~l~-~~L----~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl---~d~~~~~~~~~~~~ 78 (341)
T 3enk_A 7 TILVTGGAGYIGSHTA-VEL----LAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDV---SDERALARIFDAHP 78 (341)
T ss_dssp EEEEETTTSHHHHHHH-HHH----HHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCT---TCHHHHHHHHHHSC
T ss_pred EEEEecCCcHHHHHHH-HHH----HHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeec---CCHHHHHHHHhccC
Confidence 56666543 3333333 334 356777776654333332233333333344455554331 177888888764 4
Q ss_pred ceEEEEecc
Q 012718 209 TKLVVIHHI 217 (458)
Q Consensus 209 ~~~v~~~~~ 217 (458)
+.+|+....
T Consensus 79 ~d~vih~A~ 87 (341)
T 3enk_A 79 ITAAIHFAA 87 (341)
T ss_dssp CCEEEECCC
T ss_pred CcEEEECcc
Confidence 555554443
No 335
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.35 E-value=1.3e+02 Score=26.11 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHcCCeEEEEeCCCCCCCCHH---HHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEE-EEe
Q 012718 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLD---KLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKV-LVD 244 (458)
Q Consensus 169 s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~---~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~v-ivD 244 (458)
.....+...++..|.++.......+.....+ .++..+..++..+++..... + ....+.+++.++++ .+|
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 25 TILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL------H-DEDLDELHRMHPKMVFLN 97 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS------C-HHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC------C-HHHHHHHhhcCCCEEEEc
Confidence 3444566677788998887765433221223 45556666777776654321 1 23334455567654 455
Q ss_pred c
Q 012718 245 A 245 (458)
Q Consensus 245 ~ 245 (458)
.
T Consensus 98 ~ 98 (290)
T 2rgy_A 98 R 98 (290)
T ss_dssp S
T ss_pred c
Confidence 4
No 336
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.12 E-value=1e+02 Score=23.26 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=25.7
Q ss_pred HHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 200 KLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 200 ~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
.+++....+++.+++.. |.. -+++.++|+++|+.++-
T Consensus 74 ~v~e~~~~g~k~v~~~~-----G~~--~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 74 EYNYILSLKPKRVIFNP-----GTE--NEELEEILSENGIEPVI 110 (122)
T ss_dssp GHHHHHHHCCSEEEECT-----TCC--CHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCCEEEECC-----CCC--hHHHHHHHHHcCCeEEC
Confidence 35555555777776654 332 36899999999999883
No 337
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.11 E-value=1.3e+02 Score=26.18 Aligned_cols=48 Identities=4% Similarity=0.146 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 169 s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
.....+...++..|.++.......+.. ..+.++..+..++..|++...
T Consensus 28 ~~~~gi~~~a~~~g~~~~~~~~~~~~~-~~~~~~~l~~~~vdgiIi~~~ 75 (289)
T 3k9c_A 28 DLVEQIYAAATRRGYDVMLSAVAPSRA-EKVAVQALMRERCEAAILLGT 75 (289)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEBTTBC-HHHHHHHHTTTTEEEEEEETC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHH-HHHHHHHHHhCCCCEEEEECC
Confidence 344456667788899988887665433 455667777778877776543
No 338
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=21.10 E-value=4e+02 Score=24.31 Aligned_cols=83 Identities=4% Similarity=0.050 Sum_probs=53.3
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC-ceEEEEecccCcCcccccHHHHHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK-TKLVVIHHISNMLASILPIEEIVHWSH 235 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~n~tG~~~~l~~i~~l~~ 235 (458)
-+..++.+|..+.....+..+.+..+..+ -.++. ..+.+++++.+..+ ..+|.+.. +..|-+....+|+++|+
T Consensus 214 ~~i~~iEqP~~~~~~~~~~~l~~~~~iPi---a~dE~-~~~~~~~~~~~~~~~~d~v~~k~--~~~GGit~~~~i~~~A~ 287 (370)
T 1chr_A 214 LGVELIEQPVGRENTQALRRLSDNNRVAI---MADES-LSTLASAFDLARDRSVDVFSLKL--CNMGGVSATQKIAAVAE 287 (370)
T ss_dssp TTEEEEECCSCTTCHHHHHHHHHHSCSEE---EESSS-CCSHHHHHHHHTTTSCSEEEECT--TTSCSHHHHHHHHHHHH
T ss_pred cCCCEEECCCCcccHHHHHHHHhhCCCCE---EeCCC-cCCHHHHHHHHHcCCCCEEEECc--cccCCHHHHHHHHHHHH
Confidence 34566777766655555666655544322 22222 23677888887764 35555442 45788888999999999
Q ss_pred hcCcEEEEec
Q 012718 236 DVGAKVLVDA 245 (458)
Q Consensus 236 ~~~~~vivD~ 245 (458)
++|+.+.+=.
T Consensus 288 ~~g~~~~~~~ 297 (370)
T 1chr_A 288 ASGIASYGGT 297 (370)
T ss_dssp HHTCEEEECC
T ss_pred HcCCeEEecC
Confidence 9999887644
No 339
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=21.09 E-value=2.7e+02 Score=25.01 Aligned_cols=72 Identities=7% Similarity=0.122 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe-CCCCCCCCHHHHHHh---hcC-CceEEEEecccCcCcccccHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN-LNDDESPDLDKLKEM---LSR-KTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~-~~~~~~~d~~~l~~~---l~~-~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+..+++..+ +|..+++++|.+...+. ..++.+..+.+|.+. +++ ++++|+++...++ +-+.
T Consensus 204 ~r~~v~~H~-------af~Yfa~~yGL~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~ 269 (321)
T 1xvl_A 204 QRFLVSCEG-------AFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQK 269 (321)
T ss_dssp GCEEEEEES-------TTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHH
T ss_pred CCEEEEECc-------hHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCCh-------HHHH
Confidence 456777655 34566788999987654 334455566665554 444 6788887765432 3344
Q ss_pred HHHHhcCcEEE
Q 012718 232 HWSHDVGAKVL 242 (458)
Q Consensus 232 ~l~~~~~~~vi 242 (458)
.++++.|+.+.
T Consensus 270 ~iA~e~g~~v~ 280 (321)
T 1xvl_A 270 QVAQATGARFG 280 (321)
T ss_dssp HHHTTTCCEEE
T ss_pred HHHHhcCCcee
Confidence 55788888774
No 340
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=21.03 E-value=43 Score=32.23 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=28.1
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
.+....|...+++++++.||++|+.||+|.+.-
T Consensus 66 ~idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 98 (471)
T 1jae_A 66 IINTRSGDESAFTDMTRRCNDAGVRIYVDAVIN 98 (471)
T ss_dssp CSEETTEEHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cccCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 445557888889999999999999999999854
No 341
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=21.00 E-value=2.1e+02 Score=24.55 Aligned_cols=124 Identities=7% Similarity=0.026 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCC---hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKN---ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g---~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~ 186 (458)
.+....++..++++-++..- +--..+. ...++..++..+. +.| -+.+.+.+-..+ .....|+..|....
T Consensus 83 ~ei~~~l~~al~~vP~a~Gv-nNHmGS~~T~~~~~m~~vm~~l~----~~g-L~fvDS~Ts~~S--~a~~~A~~~gvp~~ 154 (245)
T 2nly_A 83 GEVKSRVRKAFDDIPYAVGL-NNHMGSKIVENEKIMRAILEVVK----EKN-AFIIDSGTSPHS--LIPQLAEELEVPYA 154 (245)
T ss_dssp HHHHHHHHHHHHHSTTCCEE-EEEECTTGGGCHHHHHHHHHHHH----HTT-CEEEECCCCSSC--SHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCcEEE-ecccccchhcCHHHHHHHHHHHH----HCC-CEEEcCCCCccc--HHHHHHHHcCCCeE
Confidence 34444555555555444311 1112221 2357777777662 233 555555543333 23677888898877
Q ss_pred EEeCCCCC-CCCHHHHHHhhcC-------CceEEEEecccCcCccc--ccHHHHHHHHHhcCcEEE
Q 012718 187 FLNLNDDE-SPDLDKLKEMLSR-------KTKLVVIHHISNMLASI--LPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 187 ~v~~~~~~-~~d~~~l~~~l~~-------~~~~v~~~~~~n~tG~~--~~l~~i~~l~~~~~~~vi 242 (458)
...+.-|. ..|.+.+++.+.+ +-.+|.+.|+... |.. --+++.....++.|+-++
T Consensus 155 ~rdvFLD~~~~~~~~I~~ql~~a~~~A~~~G~aIaIGhp~p~-~~~Ti~aL~~~~~~l~~~gi~LV 219 (245)
T 2nly_A 155 TRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVR-GDETYAGIRSMLDEFQAESIQLV 219 (245)
T ss_dssp ECCEESCCTTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTT-HHHHHHHHGGGHHHHHHTTEEEC
T ss_pred EeeEECCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEECCCCC-chhHHHHHHHHhhHHhhCCEEEE
Confidence 64444344 5577777776642 4467777777432 221 113333344455565443
No 342
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=20.97 E-value=4e+02 Score=22.87 Aligned_cols=92 Identities=9% Similarity=0.113 Sum_probs=43.6
Q ss_pred HcCCCCCCcEEEeCChhHHHH-HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHH
Q 012718 123 FINASDSGEIVFTKNATEAIN-LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKL 201 (458)
Q Consensus 123 ~~g~~~~~~v~~t~g~t~a~~-~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l 201 (458)
+|..+. .+++.+|++.++= .+...| .+.|-+|++.+..-......... .+..|.++..+..|-. |.+++
T Consensus 4 ~f~L~g--KvalVTGas~GIG~aia~~l----a~~Ga~Vvi~~~~~~~~~~~~~~-l~~~g~~~~~~~~Dv~---~~~~v 73 (255)
T 4g81_D 4 LFDLTG--KTALVTGSARGLGFAYAEGL----AAAGARVILNDIRATLLAESVDT-LTRKGYDAHGVAFDVT---DELAI 73 (255)
T ss_dssp TTCCTT--CEEEETTCSSHHHHHHHHHH----HHTTCEEEECCSCHHHHHHHHHH-HHHTTCCEEECCCCTT---CHHHH
T ss_pred CcCCCC--CEEEEeCCCcHHHHHHHHHH----HHCCCEEEEEECCHHHHHHHHHH-HHhcCCcEEEEEeeCC---CHHHH
Confidence 344443 3444444444443 333444 46787888776533321111122 2344777777765532 44555
Q ss_pred HHhhcC------CceEEEEecccCcCccc
Q 012718 202 KEMLSR------KTKLVVIHHISNMLASI 224 (458)
Q Consensus 202 ~~~l~~------~~~~v~~~~~~n~tG~~ 224 (458)
++.++. +..+++-+...+..+.+
T Consensus 74 ~~~~~~~~~~~G~iDiLVNNAG~~~~~~~ 102 (255)
T 4g81_D 74 EAAFSKLDAEGIHVDILINNAGIQYRKPM 102 (255)
T ss_dssp HHHHHHHHHTTCCCCEEEECCCCCCCCCG
T ss_pred HHHHHHHHHHCCCCcEEEECCCCCCCCCh
Confidence 444432 34555555544444433
No 343
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=20.80 E-value=4.1e+02 Score=22.92 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=47.8
Q ss_pred CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc-----HHHHHH
Q 012718 158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP-----IEEIVH 232 (458)
Q Consensus 158 ~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~-----l~~i~~ 232 (458)
|.|++++..... ...+...++..|.+++.+-.+ + -+.+.++........++++......||...+ .+.+.+
T Consensus 124 dgii~~d~~~e~-~~~~~~~~~~~g~~~i~l~~p-~--t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~ 199 (268)
T 1qop_A 124 DSVLVADVPVEE-SAPFRQAALRHNIAPIFICPP-N--ADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEK 199 (268)
T ss_dssp CEEEETTCCGGG-CHHHHHHHHHTTCEEECEECT-T--CCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHH
T ss_pred CEEEEcCCCHHH-HHHHHHHHHHcCCcEEEEECC-C--CCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHH
Confidence 568888766543 446677788889876543222 1 1345555544433335555555567887543 345555
Q ss_pred HHHhcCcEEEEec
Q 012718 233 WSHDVGAKVLVDA 245 (458)
Q Consensus 233 l~~~~~~~vivD~ 245 (458)
+.+..++.+++|.
T Consensus 200 lr~~~~~pi~vgg 212 (268)
T 1qop_A 200 LKEYHAAPALQGF 212 (268)
T ss_dssp HHHTTCCCEEEES
T ss_pred HHhccCCcEEEEC
Confidence 4444467777643
No 344
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=20.59 E-value=4e+02 Score=22.80 Aligned_cols=80 Identities=9% Similarity=0.088 Sum_probs=40.1
Q ss_pred cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---
Q 012718 131 EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--- 207 (458)
Q Consensus 131 ~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--- 207 (458)
.+++|+++..-=..++..| .+.|.+|++....-.........+....|.++..+..|-. |.+.+++.++.
T Consensus 29 ~~lVTGas~GIG~aia~~l----~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 29 VAFITGGGSGIGFRIAEIF----MRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR---APPAVMAAVDQALK 101 (277)
T ss_dssp EEEEETTTSHHHHHHHHHH----HTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT---CHHHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHH----HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCC---CHHHHHHHHHHHHH
Confidence 4566655443333334444 4567777766544332222223333334667777766532 55555555432
Q ss_pred ---CceEEEEecc
Q 012718 208 ---KTKLVVIHHI 217 (458)
Q Consensus 208 ---~~~~v~~~~~ 217 (458)
+..+++-...
T Consensus 102 ~~g~id~lv~nAg 114 (277)
T 4fc7_A 102 EFGRIDILINCAA 114 (277)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCc
Confidence 4556665554
No 345
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=20.55 E-value=51 Score=31.82 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.3
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
..|...+++++++.||++|+.||+|.+.-
T Consensus 77 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 105 (488)
T 1wza_A 77 DYGTLEDFHKLVEAAHQRGIKVIIDLPIN 105 (488)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 36777789999999999999999999954
No 346
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=20.52 E-value=50 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=25.3
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
...|...+++++++.||++|+.||+|.+..
T Consensus 78 ~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~N 107 (449)
T 3dhu_A 78 PEYGTLADFKALTDRAHELGMKVMLDIVYN 107 (449)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 345777779999999999999999999853
No 347
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Probab=20.51 E-value=1.7e+02 Score=26.86 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCcEEEEeccc
Q 012718 227 IEEIVHWSHDVGAKVLVDACQ 247 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a~ 247 (458)
++++++.|+++|+.+|+|--+
T Consensus 105 ~~~vv~~a~~~Gi~vildlH~ 125 (376)
T 3ayr_A 105 VHEVVDYPYKNGAFVILNLHH 125 (376)
T ss_dssp HHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHHHCCCEEEEECCC
Confidence 678888888899988888654
No 348
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=20.50 E-value=3.8e+02 Score=23.74 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=47.6
Q ss_pred cEEEeCC-hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH------cCCeEEEEeCCCCCCCCHHHHHH
Q 012718 131 EIVFTKN-ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK------TGANLKFLNLNDDESPDLDKLKE 203 (458)
Q Consensus 131 ~v~~t~g-~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~------~g~~~~~v~~~~~~~~d~~~l~~ 203 (458)
.|++|++ |.-+-.++-..+ +.|..|++..-.-.........+... .+++++..++. |.+.+++
T Consensus 27 ~vlVtGatG~iG~~l~~~L~-----~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----d~~~~~~ 96 (351)
T 3ruf_A 27 TWLITGVAGFIGSNLLEKLL-----KLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR-----DLTTCEQ 96 (351)
T ss_dssp EEEEETTTSHHHHHHHHHHH-----HTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTT-----CHHHHHH
T ss_pred eEEEECCCcHHHHHHHHHHH-----HCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCC-----CHHHHHH
Confidence 6777764 555555554433 45666665543322222222222211 24444444433 7788888
Q ss_pred hhcCCceEEEEeccc-CcCccccc-----------HHHHHHHHHhcCc
Q 012718 204 MLSRKTKLVVIHHIS-NMLASILP-----------IEEIVHWSHDVGA 239 (458)
Q Consensus 204 ~l~~~~~~v~~~~~~-n~tG~~~~-----------l~~i~~l~~~~~~ 239 (458)
.+. ++.+|+..... +......+ ...+.+.|++.++
T Consensus 97 ~~~-~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~ 143 (351)
T 3ruf_A 97 VMK-GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143 (351)
T ss_dssp HTT-TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred Hhc-CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 886 55555543321 11111111 2357788888775
No 349
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=20.47 E-value=4e+02 Score=24.78 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=56.4
Q ss_pred CCCEEEEcCC-CCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHHH
Q 012718 156 SGDEVILTVA-EHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHW 233 (458)
Q Consensus 156 ~g~~vl~~~~-~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l 233 (458)
+-+..++.+| ..+.....+..+.+..+..+. .++. ..+.+++++.+..+. .+|.+.. ...|-+....+|+++
T Consensus 238 ~~~i~~iEqP~~~~~~~~~~~~l~~~~~iPIa---~dE~-~~~~~~~~~~l~~~~~d~v~~k~--~~~GGit~~~~ia~~ 311 (410)
T 3dip_A 238 DYGVLWVEDPIAKMDNIPAVADLRRQTRAPIC---GGEN-LAGTRRFHEMLCADAIDFVMLDL--TWCGGLSEGRKIAAL 311 (410)
T ss_dssp GGTCSEEECCBSCTTCHHHHHHHHHHHCCCEE---ECTT-CCSHHHHHHHHHTTCCSEEEECT--TTSSCHHHHHHHHHH
T ss_pred hcCCCEEECCCCCcccHHHHHHHHhhCCCCEE---ecCC-cCCHHHHHHHHHcCCCCeEeecc--cccCCHHHHHHHHHH
Confidence 3345577788 666666667777666554322 2222 237888888887654 5554433 457888889999999
Q ss_pred HHhcCcEEEEecc
Q 012718 234 SHDVGAKVLVDAC 246 (458)
Q Consensus 234 ~~~~~~~vivD~a 246 (458)
|+++|+.+..=+.
T Consensus 312 A~~~gi~~~~h~~ 324 (410)
T 3dip_A 312 AETHARPLAPHXT 324 (410)
T ss_dssp HHHTTCCEEECSS
T ss_pred HHHcCCEEeeeCc
Confidence 9999998876444
No 350
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.47 E-value=2e+02 Score=25.48 Aligned_cols=38 Identities=11% Similarity=-0.027 Sum_probs=25.6
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccc
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~ 247 (458)
..+++...|. .||.-++.+.+.++++-.++.=|=|.+-
T Consensus 127 lPiilYn~P~-~tg~~l~~~~~~~La~~pnIvgiKds~g 164 (297)
T 2rfg_A 127 IPIIVYNIPP-RAVVDIKPETMARLAALPRIVGVKDATT 164 (297)
T ss_dssp SCEEEEECHH-HHSCCCCHHHHHHHHTSTTEEEEEECSC
T ss_pred CCEEEEeCcc-ccCCCCCHHHHHHHHcCCCEEEEEeCCC
Confidence 3566666664 3888888888888886455555556653
No 351
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=20.28 E-value=3.9e+02 Score=22.45 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=37.9
Q ss_pred CCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCc------EEEEeccccCCcccCCCCCCCCcEE
Q 012718 196 PDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGA------KVLVDACQSVPHMVVDVQGLDADFL 264 (458)
Q Consensus 196 ~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~------~vivD~a~~~g~~~~~~~~~~~d~~ 264 (458)
++.+++++.++.+..+++.++. -.++.+.|+++|+ +++-+...-.-. ....+.|+|++
T Consensus 73 lt~~~a~~ai~AGA~fivsP~~---------~~evi~~~~~~~v~~~~~~~~~PG~~TptE~--~~A~~~Gad~v 136 (217)
T 3lab_A 73 CTADDFQKAIDAGAQFIVSPGL---------TPELIEKAKQVKLDGQWQGVFLPGVATASEV--MIAAQAGITQL 136 (217)
T ss_dssp CSHHHHHHHHHHTCSEEEESSC---------CHHHHHHHHHHHHHCSCCCEEEEEECSHHHH--HHHHHTTCCEE
T ss_pred cCHHHHHHHHHcCCCEEEeCCC---------cHHHHHHHHHcCCCccCCCeEeCCCCCHHHH--HHHHHcCCCEE
Confidence 4777787777777777776542 5588899999999 888766422111 11224567777
No 352
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Probab=20.13 E-value=2.7e+02 Score=25.86 Aligned_cols=86 Identities=5% Similarity=0.039 Sum_probs=57.8
Q ss_pred CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHH
Q 012718 155 KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS 234 (458)
Q Consensus 155 ~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~ 234 (458)
.+-+..++.+|..+.....+..+.+..+. .|-.++. ..+..++++.+..+..=++..-+.. |-+....+|+++|
T Consensus 243 ~~~~i~~iEeP~~~~d~~~~~~l~~~~~i---PIa~dE~-~~~~~~~~~~i~~~a~d~i~~k~~~--GGit~~~~ia~~A 316 (393)
T 3u9i_A 243 HGIVPALFEQPVAKDDEEGLRRLTATRRV---PVAADES-VASATDAARLARNAAVDVLNIKLMK--CGIVEALDIAAIA 316 (393)
T ss_dssp TTCCCSEEECCSCTTCTTHHHHHHHTCSS---CEEESTT-CCSHHHHHHHHHTTCCSEEEECHHH--HCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHhhCCC---cEEeCCc-CCCHHHHHHHHHcCCCCEEEecccc--cCHHHHHHHHHHH
Confidence 34445688888877666677777665442 2333333 3377888888876543334444444 8888899999999
Q ss_pred HhcCcEEEEecc
Q 012718 235 HDVGAKVLVDAC 246 (458)
Q Consensus 235 ~~~~~~vivD~a 246 (458)
+++|+.+.+-+.
T Consensus 317 ~~~gi~~~~~~~ 328 (393)
T 3u9i_A 317 RTAGLHLMIGGM 328 (393)
T ss_dssp HHHTCEEEECCS
T ss_pred HHcCCeEEecCC
Confidence 999999987654
No 353
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=20.07 E-value=3.2e+02 Score=25.03 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=55.2
Q ss_pred CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHH
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
+.+-+..++.+|..+.....+..+.+..+..+ -.++. ..+.+++++.+..+. .+|.+. + +..|-+....++++
T Consensus 220 l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPI---a~dE~-~~~~~~~~~~i~~~~~d~v~~k-~-~~~GGit~~~~ia~ 293 (372)
T 3tj4_A 220 AKDLDIYWFEEPLWYDDVTSHARLARNTSIPI---ALGEQ-LYTVDAFRSFIDAGAVAYVQPD-V-TRLGGITEYIQVAD 293 (372)
T ss_dssp TTTSCEEEEESCSCTTCHHHHHHHHHHCSSCE---EECTT-CCSHHHHHHHHHTTCCSEECCC-T-TTTTHHHHHHHHHH
T ss_pred HhhcCCCEEECCCCchhHHHHHHHHhhcCCCE---EeCCC-ccCHHHHHHHHHcCCCCEEEeC-c-cccCCHHHHHHHHH
Confidence 34545668888877766666676666555432 22322 237788888887653 444332 2 45788888999999
Q ss_pred HHHhcCcEEEE
Q 012718 233 WSHDVGAKVLV 243 (458)
Q Consensus 233 l~~~~~~~viv 243 (458)
+|+++|+.+..
T Consensus 294 ~A~~~gi~~~~ 304 (372)
T 3tj4_A 294 LALAHRLPVVP 304 (372)
T ss_dssp HHHHTTCCBCC
T ss_pred HHHHcCCEEEe
Confidence 99999987653
No 354
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=20.07 E-value=3.6e+02 Score=24.56 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCCCCcE-EEeCC--------hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccch
Q 012718 114 ELARKKVAAFINASDSGEI-VFTKN--------ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171 (458)
Q Consensus 114 ~~~~~~la~~~g~~~~~~v-~~t~g--------~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~ 171 (458)
+.+++.|.+.+|.+.. +| +++.. +...+..++.-|. ...+++|.+++---+|....
T Consensus 78 ~~m~~~L~~~~Gf~~~-~I~lLtd~~~~~~~~pTr~nI~~aL~~L~-~~a~pgD~llfYFSGHG~q~ 142 (350)
T 4f6o_A 78 HNIFNFLTNGYGYSSD-DIVILTDDQNDLVRVPTRANMIRAMQWLV-KDAQPNDSLFLHYSGHGGQT 142 (350)
T ss_dssp HHHHHHHHHHSCCCGG-GEEEEETTSSCGGGSCCHHHHHHHHHHHH-TTCCTTCEEEEEEESCEEEC
T ss_pred HHHHHHHHHhcCCCcc-ceeeecccccccccCCCHHHHHHHHHHHH-HhCCCCCEEEEEEcCCceec
Confidence 3566777777787754 55 55542 4455666665553 24678999988887887543
No 355
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=20.06 E-value=4.3e+02 Score=22.93 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=48.9
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc----HHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP----IEEIVH 232 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----l~~i~~ 232 (458)
-|.+++++..+.. ...+...++..|.+++.+-.+.. +.+.+++.......+|++......||.... +.++.+
T Consensus 124 vdgvii~Dlp~ee-~~~~~~~~~~~gl~~i~liaP~t---~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~ 199 (267)
T 3vnd_A 124 VDSVLIADVPVEE-SAPFSKAAKAHGIAPIFIAPPNA---DADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILT 199 (267)
T ss_dssp CCEEEETTSCGGG-CHHHHHHHHHTTCEEECEECTTC---CHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHH
T ss_pred CCEEEeCCCCHhh-HHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHH
Confidence 4788888876654 33677788889998765443211 346666665555556777666667887642 445555
Q ss_pred HHHhc-CcEEEE
Q 012718 233 WSHDV-GAKVLV 243 (458)
Q Consensus 233 l~~~~-~~~viv 243 (458)
.++++ ++++++
T Consensus 200 ~vr~~~~~pv~v 211 (267)
T 3vnd_A 200 QLAEFNAPPPLL 211 (267)
T ss_dssp HHHTTTCCCEEE
T ss_pred HHHHhcCCCEEE
Confidence 55554 566665
No 356
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=20.03 E-value=2.4e+02 Score=19.96 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred cEEEeCChhHHHHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc
Q 012718 131 EIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT 209 (458)
Q Consensus 131 ~v~~t~g~t~a~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 209 (458)
.|+++++|.-+..++.... +.| ..|.+.+..-. ....+ ...|......+.. +.+.+++.+. +.
T Consensus 7 ~v~I~G~G~iG~~~~~~l~-----~~g~~~v~~~~r~~~----~~~~~-~~~~~~~~~~d~~-----~~~~~~~~~~-~~ 70 (118)
T 3ic5_A 7 NICVVGAGKIGQMIAALLK-----TSSNYSVTVADHDLA----ALAVL-NRMGVATKQVDAK-----DEAGLAKALG-GF 70 (118)
T ss_dssp EEEEECCSHHHHHHHHHHH-----HCSSEEEEEEESCHH----HHHHH-HTTTCEEEECCTT-----CHHHHHHHTT-TC
T ss_pred eEEEECCCHHHHHHHHHHH-----hCCCceEEEEeCCHH----HHHHH-HhCCCcEEEecCC-----CHHHHHHHHc-CC
Confidence 5777766766666655543 345 45655554221 22222 2346665544433 5677877775 45
Q ss_pred eEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+|+...+.. ....+.+.|.+.|+..+
T Consensus 71 d~vi~~~~~~------~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 71 DAVISAAPFF------LTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp SEEEECSCGG------GHHHHHHHHHHTTCEEE
T ss_pred CEEEECCCch------hhHHHHHHHHHhCCCEE
Confidence 5555544311 24677888888887654
Done!