BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012719
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/455 (74%), Positives = 402/455 (88%), Gaps = 1/455 (0%)
Query: 4 MKIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKK 63
MKIEEV+ST K QR+A+H+H+KGLGL+ +G A A+G VGQ AREA G++V++I+ KK
Sbjct: 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60
Query: 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123
MAGRA+LLAGPPGTGKTALAL I QELGSKVPFCPMVGSEVYS+E+KKTE+LMENFRRAI
Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Query: 124 GLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183
GLRIKE KEVYEGEVTEL+P ETE+ GGYGK+ISHVIIGLKT KGTKQLKLDP+I+++L
Sbjct: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180
Query: 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL 243
KE+V GDVIYIEANSGAVKR GR D +ATEFDLEAEEYVPLPKG+VHKKKEI+QDVTL
Sbjct: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240
Query: 244 HDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLF 303
HDLD ANARPQGGQDILS+MGQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLF
Sbjct: 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF 300
Query: 304 IDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVI 362
+DEVHMLD+ECF+YL+RALESS++PIVIFA+NRG C IRGT D+ SPHGIPLDLLDR++I
Sbjct: 301 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360
Query: 363 IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMN 422
IRT +Y P EM QI+ IRAQ E I + EE+L HLGEI T+LR++VQLL PA+++AK+N
Sbjct: 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN 420
Query: 423 GRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYI 457
G+DSI K VEE+ L+ DAKSSAK+L +QQ+KY+
Sbjct: 421 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 325 bits (832), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 155/221 (70%), Positives = 187/221 (84%), Gaps = 1/221 (0%)
Query: 237 IVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAE 296
I+QDVTLHDLD ANARPQGGQDILS GQ+ KP+KTEITDKLR EINKVVN++ID+G AE
Sbjct: 145 IIQDVTLHDLDVANARPQGGQDILSXXGQLXKPKKTEITDKLRGEINKVVNKYIDQGIAE 204
Query: 297 LVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLD 355
LVPGVLF+DEVH LD+ECF+YL+RALESS++PIVIFA+NRG C IRGT D+ SPHGIPLD
Sbjct: 205 LVPGVLFVDEVHXLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLD 264
Query: 356 LLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPA 415
LLDR+ IIRT +Y P E QI+ IRAQ E I + EE+L HLGEI T+LR++VQLL PA
Sbjct: 265 LLDRVXIIRTXLYTPQEXKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA 324
Query: 416 SVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKY 456
+++AK+NG+DSI K VEE+ L+ DAKSSAK+L +QQ+KY
Sbjct: 325 NLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKY 365
Score = 191 bits (484), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 91/125 (72%), Positives = 108/125 (86%)
Query: 5 KIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKM 64
KIEEV+ST K QR+A+H+H+KGLGL+ +G A A+G VGQ AREA G++V++I+ KK
Sbjct: 16 KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKX 75
Query: 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIG 124
AGRA+LLAGPPGTGKTALAL I QELGSKVPFCP VGSEVYS+E+KKTE+L ENFRRAIG
Sbjct: 76 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIG 135
Query: 125 LRIKE 129
LRIKE
Sbjct: 136 LRIKE 140
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 194 bits (493), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 145/227 (63%), Gaps = 7/227 (3%)
Query: 231 VHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFI 290
V K V V+LH++D N+R QG + S EI ++R++IN V +
Sbjct: 129 VRIKAGAVHTVSLHEIDVINSRTQGFLALFS-------GDTGEIKSEVREQINAKVAEWR 181
Query: 291 DEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPH 350
+EG AE++PGVLFIDEVHMLD+E FS+LNRALES ++P++I ATNRGI IRGT SPH
Sbjct: 182 EEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPH 241
Query: 351 GIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQ 410
GIP+DLLDRL+I+ T Y + QIL IR + E++ + E++ L I +TSLR+A+Q
Sbjct: 242 GIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQ 301
Query: 411 LLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYI 457
L+ AS+V + + D++ V +L+LD S + ++E Q+ ++
Sbjct: 302 LITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFL 348
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 91/124 (73%)
Query: 5 KIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKM 64
K+ E++ + +R+ AH+HI+GLGL+ + G VGQ+ AR AAG+V++MIR+ K+
Sbjct: 9 KVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKI 68
Query: 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIG 124
AGRA+L+AG PGTGKTA+A+G+ Q LG PF + GSE++S E+ KTE L + FRR+IG
Sbjct: 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIG 128
Query: 125 LRIK 128
+RIK
Sbjct: 129 VRIK 132
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 141/221 (63%), Gaps = 7/221 (3%)
Query: 237 IVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAE 296
+V V+LH++D N+R QG L+L EI ++R++IN V + +EG AE
Sbjct: 153 VVHTVSLHEIDVINSRTQG---FLALFSGDTG----EIKSEVREQINAKVAEWREEGKAE 205
Query: 297 LVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDL 356
++PGVLFIDEVH LD+E FS+LNRALES +P++I ATNRGI IRGT SPHGIP+DL
Sbjct: 206 IIPGVLFIDEVHXLDIESFSFLNRALESDXAPVLIXATNRGITRIRGTSYQSPHGIPIDL 265
Query: 357 LDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPAS 416
LDRL+I+ T Y + QIL IR + E++ E++ L I +TSLR+A+QL+ AS
Sbjct: 266 LDRLLIVSTTPYSEKDTKQILRIRCEEEDVEXSEDAYTVLTRIGLETSLRYAIQLITAAS 325
Query: 417 VVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYI 457
+V + + D++ V +L+LD S + +E Q+ ++
Sbjct: 326 LVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYXKEYQDAFL 366
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 88/126 (69%)
Query: 5 KIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKM 64
K+ E++ + +R+ AH+HI+GLGL+ + G VGQ+ AR AAG+V++ IR+ K+
Sbjct: 24 KVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGXVGQLAARRAAGVVLEXIREGKI 83
Query: 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIG 124
AGRA+L+AG PGTGKTA+A G Q LG PF + GSE++S E KTE L + FRR+IG
Sbjct: 84 AGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIG 143
Query: 125 LRIKEN 130
+RIKE
Sbjct: 144 VRIKEG 149
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 9/64 (14%)
Query: 47 EAREAAGLVVDMIRQ----KKMAGR---ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99
EA+E +V+ +R+ +K+ G+ +L+ GPPGTGKT LA I E +KVPF +
Sbjct: 19 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPFFTI 76
Query: 100 VGSE 103
GS+
Sbjct: 77 SGSD 80
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 40 AGFVGQVEA-REAAGLVVD---MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95
AG G EA +EA L + + K+ R +LL GPPGTGK+ LA + E +
Sbjct: 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST- 195
Query: 96 FCPMVGSEVYSSEVKKTEILMENF 119
F + S++ S + ++E L++N
Sbjct: 196 FFSISSSDLVSKWLGESEKLVKNL 219
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 40 AGFVGQVEA-REAAGLVVD---MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95
AG G EA +EA L + + K+ R +LL GPPGTGK+ LA + E +
Sbjct: 15 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST- 73
Query: 96 FCPMVGSEVYSSEVKKTEILMEN-FRRAIGLRIKENKE--VYEGEVTELSPEETES 148
F + S++ S + ++E L++N F+ A +ENK ++ E+ L +E+
Sbjct: 74 FFSISSSDLVSKWLGESEKLVKNLFQLA-----RENKPSIIFIDEIDSLCGSRSEN 124
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMEN-FRRAIGL 125
+ +LL GPPGTGKT LA + E + F +VGSE+ + + L+++ F+ A
Sbjct: 52 KGILLYGPPGTGKTLLAKAVATE--TNATFIRVVGSELVKKFIGEGASLVKDIFKLA--- 106
Query: 126 RIKENKEVYEGEVTELSPEETESITGG 152
+ K ++ E+ ++ + T+++TGG
Sbjct: 107 KEKAPSIIFIDEIDAIAAKRTDALTGG 133
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRI 127
+LLAGPPG GKT LA + E G + F + G E+ + V ++E + + F+RA +
Sbjct: 47 VLLAGPPGCGKTLLAKAVANESG--LNFISVKGPELLNMYVGESERAVRQVFQRA---KN 101
Query: 128 KENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQL 173
++ EV L P ++ TG + ++ ++ + ++ +Q+
Sbjct: 102 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 44 GQVEAREAAGLVVDMIRQKKMAG-------RALLLAGPPGTGKTALALGICQELGSKVPF 96
G EA+E +VD ++ + + +LL GPPGTGKT LA + E + VPF
Sbjct: 15 GNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF 72
Query: 97 CPMVGS 102
M GS
Sbjct: 73 FSMGGS 78
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 62 KKMAGRALLLAGPPGTGKTALALGICQELGSK 93
K + G L LAGPPG GKT+LA I + LG K
Sbjct: 104 KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101
+ +LL GPPGTGKT LA + +G+ F P G
Sbjct: 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250
>pdb|2CQA|A Chain A, Solution Structure Of Rsgi Ruh-039, A Fragment Of C-
Terminal Domain Of Ruvb-Like 2 From Human Cdna
Length = 95
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 128 KENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYD------ 181
KE E+ EGEV E+ + + TG +G T+K T+ TIYD
Sbjct: 8 KEETEIIEGEVVEIQIDRPATGTGSK--------VGKLTLKTTEM----ETIYDLGTKMI 55
Query: 182 -ALIKEKVAVGDVIYIEANSGAVKRVGRS 209
+L K+KV GDVI I+ +G + ++GRS
Sbjct: 56 ESLTKDKVQAGDVITIDKATGKISKLGRS 84
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
+ +LL GPPGTGKT LA + E + VPF + GS+
Sbjct: 50 KGILLVGPPGTGKTLLARAVAGE--ANVPFFHISGSD 84
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123
R +LL GPPGTGKT +A + E G+ F + G E+ S ++E N R+A
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 290
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123
R +LL GPPGTGKT +A + E G+ F + G E+ S ++E N R+A
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 290
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123
R +LL GPPGTGKT +A + E G+ F + G E+ S ++E N R+A
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 290
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123
R +LL GPPGTGKT +A + E G+ F + G E+ S ++E N R+A
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 290
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123
R +LL GPPGTGKT +A + E G+ F + G E+ S ++E N R+A
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 290
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123
R +LL GPPGTGKT +A + E G+ F + G E+ S ++E N R+A
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 290
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94
F+GQ ++ L ++ + + +LLAGPPG GKT LA I EL + +
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94
F+GQ ++ L ++ + + +LLAGPPG GKT LA I EL + +
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94
F+GQ ++ L ++ + + +LLAGPPG GKT LA I EL + +
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94
F+GQ ++ L ++ + + +LLAGPPG GKT LA I EL + +
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94
F+GQ ++ L ++ + + +LLAGPPG GKT LA I EL + +
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 70 LLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
LL GPPG GKT LA + E ++VPF M G+E
Sbjct: 43 LLLGPPGCGKTLLAKAVATE--AQVPFLAMAGAE 74
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94
F+GQ ++ L ++ + + +LLAGPPG G+T LA I EL + +
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNI 79
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
+ +LL GPPG GKT LA + E ++VPF GS+
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSD 99
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
+ +LL GPPG GKT LA + E ++VPF GS+
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSD 108
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91
++GQ ++ + ++ + +K LLL GPPG GKT LA I ELG
Sbjct: 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPIVI----FATNRGICNIRGTDMNS---PHGIP 353
+LFIDE+H L + +L A+E + IVI A + R T + + P I
Sbjct: 93 ILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152
Query: 354 LDLLDRLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412
LL R I+ + Y P E+ Q + A++ + + EE+ +G +R T +R A +L
Sbjct: 153 APLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLF 211
Query: 413 YPASVVAKMNGRDSIC 428
A++ G + I
Sbjct: 212 RRVRDFAQVAGEEVIT 227
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91
++GQ ++ + ++ + +K LLL GPPG GKT LA I ELG
Sbjct: 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPIVI----FATNRGICNIRGTDMNS---PHGIP 353
+LFIDE+H L + +L A+E + IVI A + R T + + P I
Sbjct: 93 ILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152
Query: 354 LDLLDRLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412
LL R I+ + Y P E+ Q + A++ + + EE+ +G +R T +R A +L
Sbjct: 153 APLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLF 211
Query: 413 YPASVVAKMNGRDSIC 428
A++ G + I
Sbjct: 212 RRVRDFAQVAGEEVIT 227
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91
++GQ ++ + ++ + +K LLL GPPG GKT LA I ELG
Sbjct: 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPIVI----FATNRGICNIRGTDMNS---PHGIP 353
+LFIDE+H L + +L A+E + IVI A + R T + + P I
Sbjct: 93 ILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152
Query: 354 LDLLDRLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412
LL R I+ + Y P E+ Q + A++ + + EE+ +G +R T +R A +L
Sbjct: 153 APLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLF 211
Query: 413 YPASVVAKMNGRDSIC 428
A++ G + I
Sbjct: 212 RRVRDFAQVAGEEVIT 227
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
+ +LL GPPGTG T LA + E + VPF + GS+
Sbjct: 50 KGILLVGPPGTGATLLARAVAGE--ANVPFFHISGSD 84
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
+ +LL GPPG GKT LA + E ++VPF GS+
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSD 108
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
+ +LL GPPG GKT LA + E ++VPF GS+
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSD 84
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103
R +LL GPPGTGKT L + +K F + GSE
Sbjct: 207 RGVLLYGPPGTGKTMLVKAVAN--STKAAFIRVNGSE 241
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 69 LLLAGPPGTGKTALALGICQEL 90
LL +GPPGTGKTA A+ + ++L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 69 LLLAGPPGTGKTALALGICQEL 90
LL +GPPGTGKTA A+ + ++L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 69 LLLAGPPGTGKTALALGICQEL 90
LL AGPPG GKT AL + +EL
Sbjct: 49 LLFAGPPGVGKTTAALALAREL 70
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 40 AGFVGQVEA-REAAGLVVD---MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95
AG G EA +EA L V + + + +LL GPPGTGK+ LA + E S
Sbjct: 54 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-- 111
Query: 96 FCPMVGSEVYSSEVKKTEILMENF 119
F + S++ S + ++E L++
Sbjct: 112 FFSVSSSDLVSKWMGESEKLVKQL 135
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 40 AGFVGQVEA-REAAGLVVD---MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95
AG G EA +EA L V + + + +LL GPPGTGK+ LA + E S
Sbjct: 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-- 78
Query: 96 FCPMVGSEVYSSEVKKTEILMENF 119
F + S++ S + ++E L++
Sbjct: 79 FFSVSSSDLVSKWMGESEKLVKQL 102
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 40 AGFVGQVEA-REAAGLVVD---MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95
AG G EA +EA L V + + + +LL GPPGTGK+ LA + E S
Sbjct: 39 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-- 96
Query: 96 FCPMVGSEVYSSEVKKTEILMENF 119
F + S++ S + ++E L++
Sbjct: 97 FFSVSSSDLVSKWMGESEKLVKQL 120
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDR 359
V IDEVHML F+ L + LE + + AT TD P +P+ +L R
Sbjct: 129 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT---------TD---PQKLPVTILSR 176
Query: 360 LVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAH----LGEIAR--DTSLRHAVQL 411
+ Q + A + + IR Q+E I L+EE +AH L +AR + SLR A+ L
Sbjct: 177 CL----QFHLKA--LDVEQIRHQLEHI-LNEEHIAHEPRALQLLARAAEGSLRDALSL 227
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 58 MIRQKKMAGR----ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE--VYSSEVKK 111
+++Q K + R ++LL GPP +GKTALA I +E S PF + + + SE K
Sbjct: 51 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPFIKICSPDKMIGFSETAK 108
Query: 112 TEILMENFRRA 122
+ + + F A
Sbjct: 109 CQAMKKIFDDA 119
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 40 AGFVGQVEA-REAAGLVVD---MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95
AG G EA +EA L V + + + +LL GPPGTGK+ LA + E S
Sbjct: 30 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-- 87
Query: 96 FCPMVGSEVYSSEVKKTEILMENF 119
F + S++ S + ++E L++
Sbjct: 88 FFSVSSSDLVSKWMGESEKLVKQL 111
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKV 94
RA +L GPPG GKT A + QELG +
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDI 105
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDR 359
V IDEVHML F+ L + LE + + AT TD P +P+ +L R
Sbjct: 125 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT---------TD---PQKLPVTILSR 172
Query: 360 LVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAH----LGEIAR--DTSLRHAVQL 411
+ Q + A + + IR Q+E I L+EE +AH L +AR + SLR A+ L
Sbjct: 173 CL----QFHLKA--LDVEQIRHQLEHI-LNEEHIAHEPRALQLLARAAEGSLRDALSL 223
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDR 359
V IDEVHML F+ L + LE + + AT TD P +P+ +L R
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT---------TD---PQKLPVTILSR 169
Query: 360 LVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAH----LGEIAR--DTSLRHAVQL 411
+ Q + A + + IR Q+E I L+EE +AH L +AR + SLR A+ L
Sbjct: 170 CL----QFHLKA--LDVEQIRHQLEHI-LNEEHIAHEPRALQLLARAAEGSLRDALSL 220
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDR 359
V IDEVHML F+ L + LE + + AT TD P +P+ +L R
Sbjct: 144 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT---------TD---PQKLPVTILSR 191
Query: 360 LVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAH----LGEIAR--DTSLRHAVQL 411
+ Q + A + + IR Q+E I L+EE +AH L +AR + SLR A+ L
Sbjct: 192 CL----QFHLKA--LDVEQIRHQLEHI-LNEEHIAHEPRALQLLARAAEGSLRDALSL 242
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDR 359
V IDEVHML F+ L + LE + + AT TD P +P+ +L R
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT---------TD---PQKLPVTILSR 169
Query: 360 LVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAH----LGEIAR--DTSLRHAVQL 411
+ Q + A + + IR Q+E I L+EE +AH L +AR + SLR A+ L
Sbjct: 170 CL----QFHLKA--LDVEQIRHQLEHI-LNEEHIAHEPRALQLLARAAEGSLRDALSL 220
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 58 MIRQKKMAGR----ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE--VYSSEVKK 111
+++Q K + R ++LL GPP +GKTALA I +E S PF + + + SE K
Sbjct: 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPFIKICSPDKMIGFSETAK 109
Query: 112 TEILMENFRRA 122
+ + + F A
Sbjct: 110 CQAMKKIFDDA 120
>pdb|3LW7|A Chain A, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
pdb|3LW7|B Chain B, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
Length = 179
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLR 126
+ +L+ G PG+GK+ A + +E G+KV V + YS E K E LM+ +R
Sbjct: 2 KVILITGMPGSGKSEFA-KLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRL---- 56
Query: 127 IKENKEVY-EGEVTELSPEE 145
+E+Y +G V L EE
Sbjct: 57 ----REIYGDGVVARLCVEE 72
>pdb|3H0K|A Chain A, Crystal Structure Of An Adenylated Kinase Related Protein
From Sulfolobus Solfataricus To 3.25a
pdb|3H0K|B Chain B, Crystal Structure Of An Adenylated Kinase Related Protein
From Sulfolobus Solfataricus To 3.25a
Length = 178
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLR 126
+ +L+ G PG+GK+ A + +E G+KV V + YS E K E LM+ +R
Sbjct: 1 KVILITGMPGSGKSEFA-KLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRL---- 55
Query: 127 IKENKEVY-EGEVTELSPEE 145
+E+Y +G V L EE
Sbjct: 56 ----REIYGDGVVARLCVEE 71
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 63 KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILM 116
+ R LLL GPPG GKT LA + E S F + + + S V + E L+
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAE--SNATFFNISAASLTSKYVGEGEKLV 196
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 26/118 (22%)
Query: 301 VLFIDEVHMLDMECFSYLNRALESSLSPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDR 359
V IDEVHML F+ L + LE + + AT P +P+ +L R
Sbjct: 144 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT------------ADPQKLPVTILSR 191
Query: 360 LVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAH----LGEIAR--DTSLRHAVQL 411
+ Q + A + + IR Q+E I L+EE +AH L +AR + SLR A+ L
Sbjct: 192 CL----QFHLKA--LDVEQIRHQLEHI-LNEEHIAHEPRALQLLARAAEGSLRDALSL 242
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 69 LLLAGPPGTGKTALALGICQEL 90
+L GPPGTGKT+ L + +EL
Sbjct: 61 MLFYGPPGTGKTSTILALTKEL 82
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 44 GQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95
G +E ++A +++ Q + G+ L+ P G+GKT +++ IC+ +P
Sbjct: 1 GAMETKKARSYQIELA-QPAINGKNALICAPTGSGKTFVSILICEHHFQNMP 51
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104
+ ++L GPPGTGKT LA + K F + G+E+
Sbjct: 183 KGVILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAEL 218
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104
+ +LL GPPGTGKT A + + F ++GSE+
Sbjct: 244 KGILLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL 279
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 66 GRALLLAGPPGTGKTALALGICQELGSK 93
G+A++ GPPG GK A + QELG K
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELGFK 31
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 69 LLLAGPPGTGKTALALGICQELGSK 93
LL GPPGTGKT+ + + +E+ K
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGK 73
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 63 KMAGRALLLAGPPGTGKTALALGICQE 89
+ + LLL GPPG GKT LA + E
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATE 77
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
Length = 338
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 41 GFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94
G++GQ ++ + + +++ +L +GP G GKT LA I E + +
Sbjct: 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSANI 83
>pdb|1R4V|A Chain A, 1.9a Crystal Structure Of Protein Aq328 From Aquifex
Aeolicus
Length = 171
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 410 QLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQE 451
+L Y A A+ NGRD I AD+ KAL K+ K+ Q+
Sbjct: 62 KLFYGAEQRARWNGRDFIALADLNITKALEEHIKNFQKIEQD 103
>pdb|2J4H|A Chain A, Crystal Structure Of A H121a Escherichia Coli Dctp
Deaminase Mutant Enzyme
pdb|2J4H|B Chain B, Crystal Structure Of A H121a Escherichia Coli Dctp
Deaminase Mutant Enzyme
Length = 193
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 366 QIYGPAEMIQILAIRAQVEEIVLD--EESLAHLGEIARDTSLRHAVQLLYPASVVAKMNG 423
+ GP + + R +EIVLD E H GE+A +L +V L PA +V ++G
Sbjct: 53 DLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTL-ESVTL--PADLVGWLDG 109
Query: 424 RDSICK 429
R S+ +
Sbjct: 110 RSSLAR 115
>pdb|2V9X|A Chain A, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|B Chain B, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|C Chain C, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|D Chain D, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|E Chain E, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|F Chain F, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|G Chain G, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|H Chain H, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|I Chain I, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|J Chain J, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|K Chain K, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|L Chain L, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
Length = 193
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 366 QIYGPAEMIQILAIRAQVEEIVLD--EESLAHLGEIARDTSLRHAVQLLYPASVVAKMNG 423
+ GP + + R +EIVLD E H GE+A +L +V L PA +V ++G
Sbjct: 53 DLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTL-ESVTL--PADLVGWLDG 109
Query: 424 RDSICK 429
R S+ +
Sbjct: 110 RSSLAR 115
>pdb|1XS6|A Chain A, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|B Chain B, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|C Chain C, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|D Chain D, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|E Chain E, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|F Chain F, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|2J4Q|A Chain A, Crystal Structure Of A E138a Escherichia Coli Dctp
Deaminase Mutant Enzyme In Complex With Dttp
pdb|2J4Q|B Chain B, Crystal Structure Of A E138a Escherichia Coli Dctp
Deaminase Mutant Enzyme In Complex With Dttp
Length = 193
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 366 QIYGPAEMIQILAIRAQVEEIVLD--EESLAHLGEIARDTSLRHAVQLLYPASVVAKMNG 423
+ GP + + R +EIVLD E H GE+A +L +V L PA +V ++G
Sbjct: 53 DLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTL-ESVTL--PADLVGWLDG 109
Query: 424 RDSICK 429
R S+ +
Sbjct: 110 RSSLAR 115
>pdb|1XS1|A Chain A, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|B Chain B, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|C Chain C, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|D Chain D, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|E Chain E, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|F Chain F, Dctp Deaminase From Escherichia Coli In Complex With Dutp
Length = 193
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 366 QIYGPAEMIQILAIRAQVEEIVLD--EESLAHLGEIARDTSLRHAVQLLYPASVVAKMNG 423
+ GP + + R +EIVLD E H GE+A +L +V L PA +V ++G
Sbjct: 53 DLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTL-ESVTL--PADLVGWLDG 109
Query: 424 RDSICK 429
R S+ +
Sbjct: 110 RSSLAR 115
>pdb|1XS4|A Chain A, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|B Chain B, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|C Chain C, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|D Chain D, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|E Chain E, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|F Chain F, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
Length = 193
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 366 QIYGPAEMIQILAIRAQVEEIVLD--EESLAHLGEIARDTSLRHAVQLLYPASVVAKMNG 423
+ GP + + R +EIVLD E H GE+A +L +V L PA +V ++G
Sbjct: 53 DLSGPKDEVSAALDRVXSDEIVLDEGEAFYLHPGELALAVTL-ESVTL--PADLVGWLDG 109
Query: 424 RDSICK 429
R S+ +
Sbjct: 110 RSSLAR 115
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104
+++L GPPGTGKT LA I + + V V S V
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVTSGV 88
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 54 LVVDMIRQKKMAG-----RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSE 108
+V M+R G + +LL GPPGTGKT + I + G+ F + S + S
Sbjct: 100 VVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT--FFSISASSLTSKW 157
Query: 109 VKKTE 113
V + E
Sbjct: 158 VGEGE 162
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104
+ ++L G PGTGKT LA + + + F +VGSE+
Sbjct: 217 KGVILYGAPGTGKTLLAKAVANQ--TSATFLRIVGSEL 252
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 70 LLAGPPGTGKTALALGICQE-LGSKVP 95
+L G PG GKTA+A G+ Q+ + ++VP
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVP 231
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 70 LLAGPPGTGKTALALGICQE-LGSKVP 95
+L G PG GKTA+A G+ Q+ + ++VP
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVP 231
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 68 ALLLAGPPGTGKTALALGICQELGSKV 94
A LL G PG+GKT+L I +E V
Sbjct: 35 AFLLGGQPGSGKTSLRSAIFEETQGNV 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,605,872
Number of Sequences: 62578
Number of extensions: 516552
Number of successful extensions: 1873
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 116
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)