Query 012719
Match_columns 458
No_of_seqs 206 out of 2216
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1942 DNA helicase, TBP-inte 100.0 1.1E-81 2.3E-86 579.8 30.3 455 3-457 1-456 (456)
2 COG1224 TIP49 DNA helicase TIP 100.0 1.8E-78 4E-83 572.4 28.1 438 13-457 12-450 (450)
3 PF06068 TIP49: TIP49 C-termin 100.0 1.2E-74 2.7E-79 556.5 16.8 397 17-417 1-397 (398)
4 KOG2680 DNA helicase TIP49, TB 100.0 4E-70 8.6E-75 504.5 25.4 444 3-458 3-448 (454)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 5.4E-35 1.2E-39 293.1 27.3 366 34-437 184-767 (802)
6 COG1222 RPT1 ATP-dependent 26S 100.0 1E-31 2.2E-36 256.1 17.0 240 21-289 134-396 (406)
7 COG2255 RuvB Holliday junction 100.0 9.3E-29 2E-33 229.2 22.8 243 30-456 17-273 (332)
8 PF05496 RuvB_N: Holliday junc 100.0 5.6E-30 1.2E-34 233.4 14.0 119 300-420 103-230 (233)
9 COG2812 DnaX DNA polymerase II 100.0 1.6E-29 3.4E-34 258.0 18.6 125 298-439 119-244 (515)
10 PRK14956 DNA polymerase III su 100.0 4E-29 8.7E-34 253.3 20.2 123 299-438 122-245 (484)
11 KOG0989 Replication factor C, 100.0 1.2E-28 2.6E-33 230.7 20.6 105 300-417 131-236 (346)
12 KOG0730 AAA+-type ATPase [Post 100.0 9.2E-28 2E-32 244.6 27.1 368 40-455 184-689 (693)
13 COG1223 Predicted ATPase (AAA+ 100.0 1.4E-28 2.9E-33 224.8 18.5 231 32-437 113-353 (368)
14 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-29 7.2E-34 255.1 15.2 218 20-267 412-649 (693)
15 KOG0733 Nuclear AAA ATPase (VC 100.0 8.6E-29 1.9E-33 248.7 17.3 219 18-266 487-729 (802)
16 PRK07003 DNA polymerase III su 100.0 1.5E-27 3.2E-32 249.9 22.6 122 299-437 120-242 (830)
17 PRK12323 DNA polymerase III su 100.0 2.2E-27 4.8E-32 245.9 23.3 123 300-439 126-249 (700)
18 PRK14958 DNA polymerase III su 100.0 2.5E-27 5.3E-32 246.4 23.2 123 299-438 120-243 (509)
19 PRK07994 DNA polymerase III su 100.0 5.9E-27 1.3E-31 246.6 24.8 121 300-437 121-242 (647)
20 PRK14960 DNA polymerase III su 100.0 8.2E-27 1.8E-31 242.2 23.3 121 300-437 120-241 (702)
21 PRK14949 DNA polymerase III su 100.0 8.9E-27 1.9E-31 248.4 23.6 121 300-437 121-242 (944)
22 PRK14964 DNA polymerase III su 100.0 1E-26 2.2E-31 238.3 23.1 123 299-438 117-240 (491)
23 KOG0734 AAA+-type ATPase conta 99.9 2E-27 4.4E-32 235.5 14.5 211 26-266 286-517 (752)
24 COG2256 MGS1 ATPase related to 99.9 6.4E-27 1.4E-31 226.8 16.9 217 28-437 13-236 (436)
25 KOG0736 Peroxisome assembly fa 99.9 5E-27 1.1E-31 241.5 17.0 209 34-269 666-894 (953)
26 PRK14951 DNA polymerase III su 99.9 5.1E-26 1.1E-30 239.2 23.4 123 299-438 125-248 (618)
27 PRK14952 DNA polymerase III su 99.9 4.4E-26 9.5E-31 238.9 22.2 124 299-438 119-243 (584)
28 PRK06645 DNA polymerase III su 99.9 9.8E-26 2.1E-30 232.9 23.7 129 299-441 129-258 (507)
29 PRK14957 DNA polymerase III su 99.9 1.3E-25 2.8E-30 233.4 23.2 122 300-438 121-243 (546)
30 PRK14961 DNA polymerase III su 99.9 9.8E-26 2.1E-30 226.9 21.5 122 299-437 120-242 (363)
31 KOG0727 26S proteasome regulat 99.9 1.5E-26 3.3E-31 210.5 13.5 213 19-266 136-372 (408)
32 PRK08691 DNA polymerase III su 99.9 4.3E-25 9.3E-30 231.5 25.0 123 300-439 121-244 (709)
33 PRK07764 DNA polymerase III su 99.9 1.9E-25 4.1E-30 242.4 23.0 123 299-437 121-244 (824)
34 PRK14969 DNA polymerase III su 99.9 3.2E-25 7E-30 232.0 23.7 122 299-437 120-242 (527)
35 PRK05563 DNA polymerase III su 99.9 4.7E-25 1E-29 232.3 24.0 123 299-438 120-243 (559)
36 PRK08451 DNA polymerase III su 99.9 2.1E-25 4.5E-30 230.6 20.2 122 299-437 118-240 (535)
37 PRK14965 DNA polymerase III su 99.9 5.9E-25 1.3E-29 232.5 23.5 122 299-437 120-242 (576)
38 TIGR01243 CDC48 AAA family ATP 99.9 1.5E-24 3.3E-29 237.0 27.5 361 34-437 172-708 (733)
39 PRK07133 DNA polymerase III su 99.9 4.3E-25 9.4E-30 233.6 22.3 123 299-438 119-242 (725)
40 KOG0739 AAA+-type ATPase [Post 99.9 1.5E-26 3.2E-31 215.0 9.8 199 34-263 127-343 (439)
41 PRK14959 DNA polymerase III su 99.9 6.5E-25 1.4E-29 229.3 23.3 122 299-437 120-242 (624)
42 PLN03025 replication factor C 99.9 8.5E-25 1.8E-29 216.7 22.7 120 300-437 101-221 (319)
43 PRK14962 DNA polymerase III su 99.9 7.1E-25 1.5E-29 225.8 22.7 126 299-441 118-244 (472)
44 PRK05896 DNA polymerase III su 99.9 8.3E-25 1.8E-29 227.4 23.2 122 299-437 120-242 (605)
45 KOG0738 AAA+-type ATPase [Post 99.9 6.5E-26 1.4E-30 217.8 13.5 207 33-266 205-428 (491)
46 PRK09111 DNA polymerase III su 99.9 1.3E-24 2.8E-29 229.0 22.1 124 299-439 133-257 (598)
47 PRK14953 DNA polymerase III su 99.9 4.8E-24 1E-28 220.6 22.9 122 299-437 120-242 (486)
48 PRK14955 DNA polymerase III su 99.9 6.7E-24 1.5E-28 216.0 21.9 124 300-436 129-254 (397)
49 PRK14954 DNA polymerase III su 99.9 1.3E-23 2.9E-28 221.7 24.0 126 299-437 128-255 (620)
50 PRK14963 DNA polymerase III su 99.9 8E-24 1.7E-28 219.7 21.7 122 299-438 117-239 (504)
51 PRK06647 DNA polymerase III su 99.9 5.6E-24 1.2E-28 223.3 20.2 122 299-437 120-242 (563)
52 KOG0735 AAA+-type ATPase [Post 99.9 2.9E-24 6.3E-29 219.3 17.2 200 37-266 664-881 (952)
53 KOG0991 Replication factor C, 99.9 2.1E-24 4.5E-29 194.5 14.0 118 300-435 115-233 (333)
54 PRK00080 ruvB Holliday junctio 99.9 2.6E-23 5.7E-28 206.9 23.4 127 300-439 104-250 (328)
55 TIGR00635 ruvB Holliday juncti 99.9 3.3E-23 7.1E-28 204.4 22.2 126 300-438 83-228 (305)
56 KOG0729 26S proteasome regulat 99.9 7.1E-24 1.5E-28 194.5 15.0 226 34-292 171-425 (435)
57 CHL00195 ycf46 Ycf46; Provisio 99.9 3.7E-23 8.1E-28 213.2 22.2 241 27-441 215-465 (489)
58 PRK14948 DNA polymerase III su 99.9 4.9E-23 1.1E-27 218.5 23.1 119 300-436 123-242 (620)
59 PRK06305 DNA polymerase III su 99.9 1.7E-22 3.7E-27 207.9 25.1 122 299-437 122-244 (451)
60 PRK14971 DNA polymerase III su 99.9 1.3E-22 2.9E-27 215.2 24.7 121 300-437 123-244 (614)
61 KOG2028 ATPase related to the 99.9 2E-23 4.4E-28 199.0 15.5 226 24-437 123-366 (554)
62 KOG0726 26S proteasome regulat 99.9 5.3E-24 1.2E-28 197.5 11.0 222 34-288 179-429 (440)
63 KOG0731 AAA+-type ATPase conta 99.9 2.5E-23 5.3E-28 218.4 16.0 205 32-266 303-529 (774)
64 PRK14950 DNA polymerase III su 99.9 4.1E-22 8.9E-27 211.9 23.3 122 299-437 121-243 (585)
65 TIGR02881 spore_V_K stage V sp 99.9 2.2E-22 4.8E-27 193.9 19.0 115 300-420 107-239 (261)
66 PTZ00454 26S protease regulato 99.9 1.2E-21 2.5E-26 198.1 23.0 244 21-439 128-386 (398)
67 TIGR02397 dnaX_nterm DNA polym 99.9 7.6E-22 1.6E-26 198.7 21.5 121 300-437 119-240 (355)
68 KOG0652 26S proteasome regulat 99.9 2.5E-22 5.3E-27 183.9 15.9 217 18-263 151-385 (424)
69 KOG0728 26S proteasome regulat 99.9 3.6E-22 7.8E-27 181.9 16.3 199 35-266 142-364 (404)
70 PRK07940 DNA polymerase III su 99.9 1E-21 2.2E-26 198.0 20.6 97 298-412 117-214 (394)
71 PRK07399 DNA polymerase III su 99.9 2.8E-21 6E-26 189.8 22.8 114 287-416 113-226 (314)
72 TIGR01241 FtsH_fam ATP-depende 99.9 2E-21 4.4E-26 203.5 21.7 233 34-439 49-295 (495)
73 PRK14970 DNA polymerase III su 99.9 2.5E-21 5.3E-26 195.9 21.5 121 300-437 110-231 (367)
74 PRK09112 DNA polymerase III su 99.9 7.4E-21 1.6E-25 189.3 22.5 101 299-414 142-243 (351)
75 PRK12402 replication factor C 99.9 5.4E-21 1.2E-25 191.1 21.5 121 299-437 126-247 (337)
76 COG0465 HflB ATP-dependent Zn 99.9 5.8E-22 1.2E-26 204.9 14.7 202 34-265 144-365 (596)
77 COG0464 SpoVK ATPases of the A 99.9 5.8E-21 1.3E-25 200.5 22.3 232 32-438 234-482 (494)
78 CHL00181 cbbX CbbX; Provisiona 99.9 3E-21 6.6E-26 187.5 17.7 112 300-417 124-252 (287)
79 PRK13342 recombination factor 99.9 5.3E-21 1.2E-25 195.9 20.0 122 300-438 94-218 (413)
80 PRK03992 proteasome-activating 99.9 1.3E-20 2.7E-25 191.3 22.2 236 32-440 123-373 (389)
81 TIGR01243 CDC48 AAA family ATP 99.9 1.5E-21 3.3E-26 213.5 16.5 203 34-266 447-668 (733)
82 PRK04195 replication factor C 99.9 2.1E-20 4.5E-25 195.2 23.0 118 300-436 100-222 (482)
83 PRK13341 recombination factor 99.9 8.5E-21 1.8E-25 204.0 20.4 126 300-437 111-245 (725)
84 PTZ00361 26 proteosome regulat 99.9 2.5E-20 5.4E-25 189.6 21.6 232 34-439 177-424 (438)
85 PRK00440 rfc replication facto 99.9 5.7E-20 1.2E-24 182.2 23.6 120 300-437 104-224 (319)
86 CHL00176 ftsH cell division pr 99.9 2.3E-20 5E-25 198.3 21.9 234 33-439 176-423 (638)
87 TIGR02880 cbbX_cfxQ probable R 99.9 2.1E-20 4.6E-25 181.7 17.9 113 300-418 123-252 (284)
88 TIGR02902 spore_lonB ATP-depen 99.9 3.3E-20 7.1E-25 194.9 20.5 125 300-437 177-330 (531)
89 PRK07471 DNA polymerase III su 99.9 7.3E-20 1.6E-24 183.1 21.9 102 295-413 138-240 (365)
90 PLN00020 ribulose bisphosphate 99.8 1.3E-20 2.8E-25 183.2 15.2 171 62-255 144-330 (413)
91 PRK07993 DNA polymerase III su 99.8 7.7E-20 1.7E-24 181.0 20.0 97 299-413 109-206 (334)
92 KOG0740 AAA+-type ATPase [Post 99.8 1.9E-20 4.1E-25 186.3 13.0 206 36-271 149-372 (428)
93 TIGR01242 26Sp45 26S proteasom 99.8 4.8E-19 1E-23 178.8 22.8 234 32-438 114-362 (364)
94 PRK05564 DNA polymerase III su 99.8 2.4E-19 5.2E-24 177.3 19.7 97 299-412 94-191 (313)
95 PRK05707 DNA polymerase III su 99.8 4.3E-19 9.3E-24 175.3 20.9 99 298-413 106-205 (328)
96 PRK08058 DNA polymerase III su 99.8 4.8E-19 1E-23 175.9 19.9 95 299-413 111-206 (329)
97 PRK06871 DNA polymerase III su 99.8 6.4E-19 1.4E-23 172.8 20.5 97 299-413 108-205 (325)
98 KOG0741 AAA+-type ATPase [Post 99.8 3.2E-19 6.9E-24 177.4 18.2 207 31-265 210-450 (744)
99 KOG0737 AAA+-type ATPase [Post 99.8 5.6E-20 1.2E-24 177.0 12.2 203 34-266 86-307 (386)
100 PRK06893 DNA replication initi 99.8 1.6E-18 3.4E-23 163.7 21.2 128 300-437 93-228 (229)
101 KOG2035 Replication factor C, 99.8 4.4E-19 9.5E-24 164.1 16.4 107 299-418 128-235 (351)
102 PRK04132 replication factor C 99.8 4.1E-19 9E-24 191.8 18.9 120 300-437 632-752 (846)
103 TIGR03689 pup_AAA proteasome A 99.8 2.9E-19 6.3E-24 184.2 15.7 208 34-266 176-406 (512)
104 PHA02544 44 clamp loader, smal 99.8 3.1E-18 6.8E-23 169.7 22.2 116 300-434 102-226 (316)
105 PRK08084 DNA replication initi 99.8 9.9E-19 2.1E-23 165.7 17.6 128 300-438 99-235 (235)
106 TIGR02639 ClpA ATP-dependent C 99.8 2E-17 4.4E-22 180.6 27.4 337 37-414 179-706 (731)
107 PRK06620 hypothetical protein; 99.8 8.9E-18 1.9E-22 156.5 20.7 123 300-436 87-213 (214)
108 CHL00081 chlI Mg-protoporyphyr 99.8 6.3E-18 1.4E-22 166.9 20.5 137 299-445 145-328 (350)
109 PRK08769 DNA polymerase III su 99.8 5.9E-18 1.3E-22 165.8 20.1 95 299-412 114-209 (319)
110 KOG0651 26S proteasome regulat 99.8 3.5E-19 7.7E-24 167.2 9.9 197 36-265 128-348 (388)
111 PRK06090 DNA polymerase III su 99.8 7.2E-18 1.6E-22 165.0 19.4 95 298-413 108-203 (319)
112 TIGR00390 hslU ATP-dependent p 99.8 4.4E-18 9.6E-23 169.2 18.0 336 41-438 13-429 (441)
113 KOG0732 AAA+-type ATPase conta 99.8 8.4E-19 1.8E-23 189.1 13.1 205 34-266 259-485 (1080)
114 TIGR00678 holB DNA polymerase 99.8 8.7E-18 1.9E-22 153.9 17.8 91 299-408 97-188 (188)
115 PRK08727 hypothetical protein; 99.8 2.3E-17 5E-22 156.1 20.1 128 300-437 95-229 (233)
116 TIGR02928 orc1/cdc6 family rep 99.8 5.1E-17 1.1E-21 164.3 23.1 131 300-439 131-274 (365)
117 PRK06964 DNA polymerase III su 99.8 2E-17 4.2E-22 163.5 19.2 98 294-412 128-226 (342)
118 CHL00206 ycf2 Ycf2; Provisiona 99.8 1.2E-17 2.7E-22 187.4 19.7 91 347-437 1780-1875(2281)
119 PTZ00112 origin recognition co 99.8 8.1E-17 1.7E-21 170.3 24.3 129 300-440 871-1007(1164)
120 PRK13407 bchI magnesium chelat 99.8 3.1E-17 6.6E-22 161.8 19.8 136 299-444 129-311 (334)
121 PRK08903 DnaA regulatory inact 99.8 8.1E-17 1.7E-21 152.0 21.9 127 300-437 92-224 (227)
122 PRK10733 hflB ATP-dependent me 99.8 4.1E-17 9E-22 175.3 21.8 233 34-439 146-392 (644)
123 PRK05642 DNA replication initi 99.8 6.1E-17 1.3E-21 153.3 20.4 128 300-437 99-233 (234)
124 PRK00411 cdc6 cell division co 99.8 1.5E-16 3.2E-21 162.6 24.4 131 300-439 140-282 (394)
125 PF13177 DNA_pol3_delta2: DNA 99.8 2.5E-17 5.3E-22 147.0 16.1 61 297-369 101-162 (162)
126 PRK00149 dnaA chromosomal repl 99.8 2E-17 4.4E-22 171.5 17.8 128 300-439 213-349 (450)
127 PRK05917 DNA polymerase III su 99.8 5.7E-17 1.2E-21 155.7 18.8 122 297-451 94-218 (290)
128 TIGR00362 DnaA chromosomal rep 99.7 5.1E-17 1.1E-21 166.4 19.0 131 300-440 201-338 (405)
129 COG0606 Predicted ATPase with 99.7 3.8E-18 8.1E-23 170.1 10.1 142 297-438 282-484 (490)
130 KOG0735 AAA+-type ATPase [Post 99.7 1.4E-15 3E-20 156.4 28.6 357 20-419 390-885 (952)
131 COG0470 HolB ATPase involved i 99.7 4E-17 8.7E-22 162.1 16.9 97 298-418 109-206 (325)
132 TIGR02903 spore_lon_C ATP-depe 99.7 1.9E-16 4.1E-21 169.0 22.6 126 299-437 266-428 (615)
133 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.9E-16 4.1E-21 149.2 19.4 127 300-436 92-225 (226)
134 CHL00095 clpC Clp protease ATP 99.7 7.5E-16 1.6E-20 170.3 26.9 132 37-203 176-318 (821)
135 PRK05201 hslU ATP-dependent pr 99.7 8.1E-16 1.7E-20 153.3 22.9 131 300-437 251-430 (443)
136 TIGR02030 BchI-ChlI magnesium 99.7 4.2E-16 9.2E-21 154.0 20.8 137 299-445 132-315 (337)
137 PRK12422 chromosomal replicati 99.7 2.4E-16 5.1E-21 161.9 19.1 130 300-439 204-343 (445)
138 PRK05818 DNA polymerase III su 99.7 3.6E-16 7.7E-21 147.1 18.7 92 300-413 90-192 (261)
139 KOG0990 Replication factor C, 99.7 5E-17 1.1E-21 153.7 12.8 108 299-419 132-240 (360)
140 PRK14086 dnaA chromosomal repl 99.7 4.7E-16 1E-20 162.4 20.7 129 300-440 379-516 (617)
141 PRK14088 dnaA chromosomal repl 99.7 2.7E-16 5.9E-21 161.8 18.6 131 300-440 196-333 (440)
142 TIGR00763 lon ATP-dependent pr 99.7 1.9E-16 4.2E-21 173.9 17.7 91 347-437 471-584 (775)
143 PRK09087 hypothetical protein; 99.7 7.8E-16 1.7E-20 144.7 19.0 128 300-439 89-222 (226)
144 PRK07276 DNA polymerase III su 99.7 8E-16 1.7E-20 148.4 19.1 95 298-413 104-199 (290)
145 PF00308 Bac_DnaA: Bacterial d 99.7 6.8E-16 1.5E-20 144.5 17.8 112 300-420 99-217 (219)
146 COG0593 DnaA ATPase involved i 99.7 2.9E-15 6.2E-20 149.6 22.6 131 300-442 177-316 (408)
147 PRK14087 dnaA chromosomal repl 99.7 1.1E-15 2.5E-20 157.4 20.4 130 300-438 208-347 (450)
148 COG1474 CDC6 Cdc6-related prot 99.7 3E-15 6.6E-20 149.7 21.1 129 300-437 125-263 (366)
149 TIGR02442 Cob-chelat-sub cobal 99.7 9E-16 1.9E-20 164.8 18.2 136 298-444 126-309 (633)
150 PRK13531 regulatory ATPase Rav 99.7 5.1E-15 1.1E-19 150.4 22.5 134 300-443 109-287 (498)
151 PF01078 Mg_chelatase: Magnesi 99.7 8.7E-17 1.9E-21 146.2 6.5 75 298-372 106-206 (206)
152 KOG0742 AAA+-type ATPase [Post 99.7 4.7E-15 1E-19 144.0 18.0 124 19-147 335-461 (630)
153 TIGR02640 gas_vesic_GvpN gas v 99.6 1.1E-14 2.4E-19 140.2 19.9 126 300-440 107-258 (262)
154 TIGR00368 Mg chelatase-related 99.6 3.9E-15 8.4E-20 154.5 17.8 140 299-438 296-498 (499)
155 PRK05342 clpX ATP-dependent pr 99.6 3.2E-15 7E-20 151.7 16.5 66 37-104 67-144 (412)
156 COG1220 HslU ATP-dependent pro 99.6 7.3E-15 1.6E-19 139.7 17.5 132 299-437 251-431 (444)
157 PRK11034 clpA ATP-dependent Cl 99.6 5.1E-15 1.1E-19 160.3 18.7 114 300-413 559-709 (758)
158 TIGR03345 VI_ClpV1 type VI sec 99.6 1E-14 2.2E-19 160.7 21.5 103 37-146 184-297 (852)
159 TIGR00602 rad24 checkpoint pro 99.6 3.2E-15 6.9E-20 158.2 15.9 135 300-435 197-351 (637)
160 COG0542 clpA ATP-binding subun 99.6 1.1E-14 2.3E-19 155.0 18.2 115 299-413 594-748 (786)
161 COG1239 ChlI Mg-chelatase subu 99.6 9.4E-15 2E-19 144.1 15.2 139 297-446 143-329 (423)
162 PRK10787 DNA-binding ATP-depen 99.6 2.1E-14 4.6E-19 156.7 19.2 126 300-437 418-580 (784)
163 TIGR03345 VI_ClpV1 type VI sec 99.6 1.5E-14 3.3E-19 159.5 17.4 114 300-414 670-825 (852)
164 COG1219 ClpX ATP-dependent pro 99.6 6.3E-15 1.4E-19 139.2 10.8 125 38-164 58-199 (408)
165 TIGR00382 clpX endopeptidase C 99.6 5E-14 1.1E-18 142.3 18.0 67 351-417 300-382 (413)
166 PRK13406 bchD magnesium chelat 99.6 6.5E-14 1.4E-18 147.7 19.0 138 299-444 94-255 (584)
167 TIGR00764 lon_rel lon-related 99.6 9.3E-14 2E-18 148.0 20.3 133 297-439 216-391 (608)
168 TIGR03015 pepcterm_ATPase puta 99.6 7.1E-13 1.5E-17 128.2 24.4 131 300-437 125-264 (269)
169 PRK09862 putative ATP-dependen 99.6 1.4E-13 3.1E-18 142.2 19.1 141 299-439 295-492 (506)
170 TIGR02031 BchD-ChlD magnesium 99.6 1.3E-13 2.7E-18 146.7 19.0 136 300-444 86-263 (589)
171 PRK08699 DNA polymerase III su 99.6 1.5E-13 3.2E-18 135.8 17.6 71 298-380 113-184 (325)
172 PRK07132 DNA polymerase III su 99.6 1.1E-13 2.4E-18 134.7 16.3 93 300-412 92-185 (299)
173 PF00004 AAA: ATPase family as 99.5 3.8E-14 8.3E-19 121.4 11.4 73 69-145 1-74 (132)
174 KOG0744 AAA+-type ATPase [Post 99.5 2.3E-13 4.9E-18 129.0 15.9 108 39-146 141-267 (423)
175 KOG0736 Peroxisome assembly fa 99.5 5E-12 1.1E-16 131.7 25.9 165 67-263 432-606 (953)
176 PRK11034 clpA ATP-dependent Cl 99.5 3.8E-13 8.2E-18 145.9 18.4 92 351-442 332-436 (758)
177 TIGR03346 chaperone_ClpB ATP-d 99.5 5.3E-13 1.2E-17 148.2 19.2 117 300-416 669-822 (852)
178 COG0466 Lon ATP-dependent Lon 99.5 7.5E-13 1.6E-17 137.4 18.4 114 25-144 300-432 (782)
179 KOG1969 DNA replication checkp 99.5 8.3E-13 1.8E-17 136.8 18.5 109 299-420 388-519 (877)
180 smart00350 MCM minichromosome 99.5 1.4E-12 3E-17 137.0 20.6 142 300-441 302-506 (509)
181 PRK10865 protein disaggregatio 99.5 1.3E-12 2.9E-17 144.6 20.5 116 300-415 672-824 (857)
182 COG0714 MoxR-like ATPases [Gen 99.5 2.7E-12 5.8E-17 128.0 19.2 139 300-445 114-302 (329)
183 PRK10865 protein disaggregatio 99.5 1.5E-12 3.3E-17 144.1 18.0 103 37-146 175-288 (857)
184 PRK13765 ATP-dependent proteas 99.5 2.1E-12 4.6E-17 137.2 18.2 131 297-437 225-398 (637)
185 TIGR03346 chaperone_ClpB ATP-d 99.5 1.4E-12 3E-17 144.9 17.1 102 37-145 170-282 (852)
186 TIGR01650 PD_CobS cobaltochela 99.4 6.5E-12 1.4E-16 122.5 18.4 101 300-400 136-252 (327)
187 PRK08485 DNA polymerase III su 99.4 9.6E-13 2.1E-17 118.2 11.3 104 300-417 56-173 (206)
188 KOG0745 Putative ATP-dependent 99.4 2.5E-12 5.5E-17 126.1 14.8 255 67-421 227-510 (564)
189 KOG2004 Mitochondrial ATP-depe 99.4 5.7E-12 1.2E-16 130.4 18.0 96 41-142 412-518 (906)
190 smart00763 AAA_PrkA PrkA AAA d 99.4 3.7E-11 8.1E-16 118.4 19.2 97 299-400 237-349 (361)
191 PRK06581 DNA polymerase III su 99.3 1.1E-10 2.4E-15 107.8 17.6 89 297-400 88-177 (263)
192 PF07726 AAA_3: ATPase family 99.3 4.8E-12 1E-16 106.0 7.8 55 300-361 64-130 (131)
193 PF05673 DUF815: Protein of un 99.3 1.6E-10 3.5E-15 107.5 18.0 65 36-101 23-88 (249)
194 PF03215 Rad17: Rad17 cell cyc 99.3 4.4E-10 9.5E-15 117.3 21.0 117 300-417 134-269 (519)
195 TIGR01817 nifA Nif-specific re 99.3 1.6E-10 3.4E-15 122.7 17.8 126 300-433 292-439 (534)
196 KOG0743 AAA+-type ATPase [Post 99.2 9.7E-11 2.1E-15 116.6 12.5 110 25-146 185-303 (457)
197 PTZ00111 DNA replication licen 99.2 9.9E-10 2.1E-14 119.1 20.1 143 300-442 559-807 (915)
198 TIGR02974 phageshock_pspF psp 99.2 7.3E-10 1.6E-14 110.1 17.0 115 300-419 95-233 (329)
199 PF05621 TniB: Bacterial TniB 99.2 2.9E-09 6.2E-14 102.3 20.3 125 300-434 147-284 (302)
200 COG1221 PspF Transcriptional r 99.2 4.9E-10 1.1E-14 112.0 15.2 111 300-420 175-310 (403)
201 PHA02244 ATPase-like protein 99.2 6.2E-10 1.3E-14 109.9 15.3 72 300-372 182-265 (383)
202 KOG1514 Origin recognition com 99.2 2.3E-09 5.1E-14 111.4 20.1 136 298-442 508-658 (767)
203 PRK15424 propionate catabolism 99.2 1E-09 2.2E-14 115.1 17.1 128 300-432 324-478 (538)
204 COG0542 clpA ATP-binding subun 99.2 1.7E-09 3.6E-14 115.8 18.9 210 37-422 167-396 (786)
205 TIGR02329 propionate_PrpR prop 99.1 1.7E-09 3.7E-14 113.4 18.1 130 300-434 309-465 (526)
206 PRK11388 DNA-binding transcrip 99.1 7.5E-10 1.6E-14 120.1 16.0 128 300-435 418-567 (638)
207 COG2204 AtoC Response regulato 99.1 1.2E-09 2.6E-14 111.1 15.2 125 300-432 237-384 (464)
208 PF07724 AAA_2: AAA domain (Cd 99.1 1.6E-10 3.6E-15 103.7 7.4 38 67-104 4-43 (171)
209 COG3829 RocR Transcriptional r 99.1 1.9E-09 4.2E-14 109.7 14.9 128 299-433 341-491 (560)
210 PRK11608 pspF phage shock prot 99.1 5.9E-09 1.3E-13 103.6 18.0 115 300-419 102-240 (326)
211 PRK10820 DNA-binding transcrip 99.1 3E-09 6.4E-14 112.3 16.5 125 300-432 300-447 (520)
212 KOG2227 Pre-initiation complex 99.1 6.1E-09 1.3E-13 103.9 16.8 135 299-442 257-418 (529)
213 KOG1970 Checkpoint RAD17-RFC c 99.0 9.5E-09 2.1E-13 104.2 17.0 111 300-415 196-319 (634)
214 cd00009 AAA The AAA+ (ATPases 99.0 1E-08 2.2E-13 88.4 14.7 57 300-366 86-150 (151)
215 PF07728 AAA_5: AAA domain (dy 99.0 9.8E-10 2.1E-14 95.3 7.9 53 300-360 67-139 (139)
216 COG2607 Predicted ATPase (AAA+ 99.0 3.9E-08 8.5E-13 90.3 18.4 64 37-101 57-121 (287)
217 COG3604 FhlA Transcriptional r 99.0 1E-08 2.2E-13 103.2 15.9 115 300-419 319-456 (550)
218 PRK05022 anaerobic nitric oxid 99.0 1.8E-08 3.9E-13 106.3 18.8 116 300-420 283-421 (509)
219 COG3267 ExeA Type II secretory 99.0 1.1E-07 2.3E-12 88.5 20.5 126 299-433 132-267 (269)
220 KOG1051 Chaperone HSP104 and r 99.0 2.2E-08 4.8E-13 108.6 17.5 101 300-400 662-812 (898)
221 PRK15429 formate hydrogenlyase 98.9 3.2E-08 6.9E-13 108.2 17.2 115 300-419 472-609 (686)
222 PF01637 Arch_ATPase: Archaeal 98.9 2.9E-08 6.2E-13 93.2 14.6 102 300-410 120-233 (234)
223 TIGR02915 PEP_resp_reg putativ 98.8 1.6E-07 3.4E-12 97.7 18.8 125 300-432 235-382 (445)
224 PRK11331 5-methylcytosine-spec 98.8 9.4E-08 2E-12 97.0 15.9 47 39-92 174-220 (459)
225 PF00158 Sigma54_activat: Sigm 98.8 8.3E-08 1.8E-12 86.0 13.1 60 42-104 1-61 (168)
226 PRK10923 glnG nitrogen regulat 98.8 1.6E-07 3.4E-12 98.4 16.9 126 300-433 234-382 (469)
227 PRK14700 recombination factor 98.8 1.6E-08 3.4E-13 96.9 8.0 90 347-437 18-113 (300)
228 COG0464 SpoVK ATPases of the A 98.8 1.6E-07 3.5E-12 98.9 16.3 173 60-265 12-195 (494)
229 PF00493 MCM: MCM2/3/5 family 98.8 3.3E-09 7E-14 105.6 3.2 142 300-441 123-328 (331)
230 COG1241 MCM2 Predicted ATPase 98.7 2.1E-07 4.5E-12 99.0 15.6 146 300-445 385-598 (682)
231 TIGR01818 ntrC nitrogen regula 98.7 5.6E-07 1.2E-11 94.0 18.5 127 300-434 230-379 (463)
232 PRK11361 acetoacetate metaboli 98.7 4.5E-07 9.8E-12 94.6 17.5 126 300-433 239-387 (457)
233 CHL00095 clpC Clp protease ATP 98.7 4.3E-08 9.2E-13 109.0 10.1 99 40-144 509-626 (821)
234 PRK15115 response regulator Gl 98.7 7.7E-07 1.7E-11 92.5 16.8 127 300-434 230-379 (444)
235 smart00382 AAA ATPases associa 98.6 1.5E-07 3.2E-12 80.3 8.2 77 66-145 2-94 (148)
236 KOG0741 AAA+-type ATPase [Post 98.6 4.6E-07 1E-11 91.6 12.4 112 66-203 538-651 (744)
237 PRK15455 PrkA family serine pr 98.6 7.4E-07 1.6E-11 92.5 13.8 64 37-101 73-137 (644)
238 KOG0480 DNA replication licens 98.6 1.6E-06 3.4E-11 89.6 15.3 139 300-439 444-643 (764)
239 TIGR02639 ClpA ATP-dependent C 98.5 5.1E-07 1.1E-11 99.3 11.9 155 278-442 255-432 (731)
240 KOG0478 DNA replication licens 98.5 4.5E-06 9.8E-11 87.0 17.7 139 300-438 528-723 (804)
241 PRK12377 putative replication 98.5 1.2E-06 2.5E-11 83.4 12.6 100 35-142 69-176 (248)
242 KOG0482 DNA replication licens 98.5 3.8E-06 8.3E-11 84.7 16.3 141 300-442 441-641 (721)
243 COG1222 RPT1 ATP-dependent 26S 98.5 2.1E-06 4.6E-11 83.5 14.1 145 284-441 220-394 (406)
244 PRK10365 transcriptional regul 98.5 5.3E-06 1.2E-10 86.1 18.2 127 300-434 235-384 (441)
245 KOG2170 ATPase of the AAA+ sup 98.4 1.6E-05 3.4E-10 75.8 17.7 39 300-338 180-226 (344)
246 PF13173 AAA_14: AAA domain 98.4 1.1E-06 2.5E-11 75.0 8.9 64 300-373 63-127 (128)
247 TIGR02688 conserved hypothetic 98.4 1.8E-05 3.9E-10 79.8 18.4 145 300-448 262-442 (449)
248 PRK07952 DNA replication prote 98.4 2E-06 4.4E-11 81.6 10.8 102 36-142 68-175 (244)
249 PF13401 AAA_22: AAA domain; P 98.4 1.5E-06 3.2E-11 74.2 8.8 35 300-334 89-124 (131)
250 PF13191 AAA_16: AAA ATPase do 98.4 1.1E-06 2.4E-11 79.5 7.8 49 41-91 1-49 (185)
251 COG1067 LonB Predicted ATP-dep 98.4 4.1E-06 8.8E-11 89.3 12.8 134 295-438 222-398 (647)
252 COG5271 MDN1 AAA ATPase contai 98.3 1.4E-05 3E-10 89.8 16.7 123 301-433 958-1101(4600)
253 KOG0477 DNA replication licens 98.3 2.4E-06 5.1E-11 88.0 10.1 143 300-442 548-760 (854)
254 TIGR01128 holA DNA polymerase 98.3 6E-06 1.3E-10 81.2 12.7 125 300-437 48-176 (302)
255 PRK08116 hypothetical protein; 98.3 2.6E-06 5.6E-11 82.3 9.8 99 37-140 82-189 (268)
256 PF14532 Sigma54_activ_2: Sigm 98.3 1.4E-06 3E-11 75.5 6.6 63 300-367 71-137 (138)
257 KOG1968 Replication factor C, 98.3 4.7E-06 1E-10 91.5 10.7 103 300-415 430-535 (871)
258 PRK08939 primosomal protein Dn 98.2 3.8E-06 8.1E-11 82.6 8.6 68 66-140 156-228 (306)
259 COG3283 TyrR Transcriptional r 98.2 3.7E-05 8E-10 74.8 15.0 115 300-419 295-432 (511)
260 PRK08181 transposase; Validate 98.2 5.5E-06 1.2E-10 79.8 8.6 72 67-143 107-181 (269)
261 COG1484 DnaC DNA replication p 98.1 5.9E-06 1.3E-10 79.1 7.4 88 46-141 89-179 (254)
262 PRK06921 hypothetical protein; 98.1 1E-05 2.2E-10 78.0 8.8 70 66-140 117-188 (266)
263 PRK06835 DNA replication prote 98.1 1.3E-05 2.9E-10 79.4 9.0 71 67-142 184-259 (329)
264 PF08298 AAA_PrkA: PrkA AAA do 98.1 0.00015 3.1E-09 71.5 15.5 63 38-101 58-122 (358)
265 PF06309 Torsin: Torsin; Inte 98.0 1.4E-05 2.9E-10 67.2 6.9 51 40-90 25-77 (127)
266 PRK06526 transposase; Provisio 98.0 5.4E-06 1.2E-10 79.3 4.8 69 67-142 99-172 (254)
267 PF01695 IstB_IS21: IstB-like 98.0 4.3E-06 9.4E-11 75.7 3.8 70 66-140 47-119 (178)
268 PF12775 AAA_7: P-loop contain 98.0 9.1E-05 2E-09 71.7 12.3 74 300-382 102-194 (272)
269 PF00931 NB-ARC: NB-ARC domain 97.9 0.00012 2.6E-09 71.2 12.9 91 300-406 103-197 (287)
270 PF07693 KAP_NTPase: KAP famil 97.9 0.0017 3.6E-08 64.5 21.2 84 299-382 173-264 (325)
271 KOG0481 DNA replication licens 97.9 0.00064 1.4E-08 69.1 17.6 138 300-441 430-641 (729)
272 COG3284 AcoR Transcriptional a 97.9 5.7E-05 1.2E-09 78.9 10.3 114 300-419 409-540 (606)
273 PF03969 AFG1_ATPase: AFG1-lik 97.9 3.1E-05 6.8E-10 77.8 8.0 67 300-366 129-199 (362)
274 COG5271 MDN1 AAA ATPase contai 97.9 0.00025 5.5E-09 80.3 14.9 90 300-399 1613-1717(4600)
275 PF13654 AAA_32: AAA domain; P 97.9 6.2E-05 1.3E-09 78.8 9.8 135 296-437 330-504 (509)
276 PF10923 DUF2791: P-loop Domai 97.9 0.016 3.4E-07 59.1 26.5 55 34-90 18-73 (416)
277 PRK09183 transposase/IS protei 97.8 3.8E-05 8.3E-10 73.8 7.1 73 66-142 102-177 (259)
278 PF05970 PIF1: PIF1-like helic 97.8 0.00013 2.9E-09 73.7 10.8 44 47-92 5-48 (364)
279 PHA00729 NTP-binding motif con 97.8 7.2E-05 1.6E-09 69.7 8.0 34 56-91 9-42 (226)
280 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.6E-10 66.1 4.1 31 69-101 2-32 (121)
281 PRK07452 DNA polymerase III su 97.8 0.00028 6.1E-09 70.3 12.2 128 300-437 63-197 (326)
282 PRK10536 hypothetical protein; 97.7 0.00022 4.8E-09 67.6 10.4 61 37-104 52-114 (262)
283 KOG2543 Origin recognition com 97.7 0.0018 3.9E-08 63.9 16.7 62 39-104 5-66 (438)
284 PF13604 AAA_30: AAA domain; P 97.7 0.0003 6.6E-09 64.7 10.9 32 300-331 95-126 (196)
285 PF10236 DAP3: Mitochondrial r 97.7 0.0036 7.8E-08 61.8 19.0 48 362-410 258-308 (309)
286 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 5.7E-05 1.2E-09 68.5 5.5 38 69-110 2-39 (183)
287 PRK14532 adenylate kinase; Pro 97.7 5.9E-05 1.3E-09 68.8 5.6 39 68-110 2-40 (188)
288 PLN02674 adenylate kinase 97.7 0.00011 2.5E-09 69.5 7.3 54 66-123 31-84 (244)
289 PRK14531 adenylate kinase; Pro 97.7 6E-05 1.3E-09 68.6 5.1 39 67-109 3-41 (183)
290 COG0563 Adk Adenylate kinase a 97.7 4.4E-05 9.6E-10 69.0 4.1 50 68-121 2-51 (178)
291 PRK05574 holA DNA polymerase I 97.6 0.0008 1.7E-08 67.3 13.6 127 300-439 78-213 (340)
292 PF03266 NTPase_1: NTPase; In 97.6 8.8E-05 1.9E-09 66.4 5.8 63 300-374 97-164 (168)
293 PRK00131 aroK shikimate kinase 97.6 6E-05 1.3E-09 67.5 4.7 33 65-99 3-35 (175)
294 PRK08118 topology modulation p 97.6 6.1E-05 1.3E-09 67.5 4.1 33 67-101 2-34 (167)
295 PF05729 NACHT: NACHT domain 97.6 0.0011 2.3E-08 58.5 12.1 25 67-91 1-25 (166)
296 PF00910 RNA_helicase: RNA hel 97.6 8.8E-05 1.9E-09 61.2 4.4 23 69-91 1-23 (107)
297 KOG0728 26S proteasome regulat 97.6 0.0011 2.5E-08 61.6 11.9 134 296-442 238-391 (404)
298 COG4650 RtcR Sigma54-dependent 97.5 0.0025 5.4E-08 60.8 14.0 132 300-436 284-440 (531)
299 PF00406 ADK: Adenylate kinase 97.5 7.6E-05 1.7E-09 65.6 3.8 49 71-123 1-49 (151)
300 PRK12723 flagellar biosynthesi 97.5 0.0059 1.3E-07 61.9 17.7 25 66-90 174-198 (388)
301 PLN03210 Resistant to P. syrin 97.5 0.0075 1.6E-07 70.2 20.6 54 35-91 179-232 (1153)
302 PTZ00202 tuzin; Provisional 97.5 0.018 3.8E-07 58.7 20.2 54 36-91 258-311 (550)
303 PRK03839 putative kinase; Prov 97.5 0.0001 2.3E-09 66.7 4.2 31 68-100 2-32 (180)
304 KOG3347 Predicted nucleotide k 97.5 0.0001 2.2E-09 63.3 3.7 33 67-101 8-40 (176)
305 PRK04841 transcriptional regul 97.5 0.01 2.2E-07 67.3 21.1 93 300-408 123-222 (903)
306 PTZ00088 adenylate kinase 1; P 97.5 0.00017 3.7E-09 67.9 5.6 41 67-111 7-47 (229)
307 PRK14722 flhF flagellar biosyn 97.5 0.0023 4.9E-08 64.4 13.9 25 66-90 137-161 (374)
308 PRK07261 topology modulation p 97.5 0.0003 6.4E-09 63.3 6.6 40 68-109 2-41 (171)
309 cd01428 ADK Adenylate kinase ( 97.4 0.00017 3.7E-09 65.9 5.1 37 69-109 2-38 (194)
310 PRK04296 thymidine kinase; Pro 97.4 0.0023 4.9E-08 58.6 12.4 24 67-90 3-26 (190)
311 PRK00625 shikimate kinase; Pro 97.4 0.00014 3.1E-09 65.5 4.3 31 68-100 2-32 (173)
312 PLN02200 adenylate kinase fami 97.4 0.00025 5.5E-09 67.1 6.0 41 66-110 43-83 (234)
313 PRK13947 shikimate kinase; Pro 97.4 0.00016 3.5E-09 64.8 4.4 31 68-100 3-33 (171)
314 PLN00020 ribulose bisphosphate 97.4 0.0055 1.2E-07 61.0 15.1 88 298-400 212-328 (413)
315 PF14516 AAA_35: AAA-like doma 97.4 0.019 4.1E-07 57.3 19.3 102 299-413 128-241 (331)
316 KOG2228 Origin recognition com 97.4 0.0037 8.1E-08 60.8 13.4 60 42-102 26-88 (408)
317 PF12774 AAA_6: Hydrolytic ATP 97.4 0.0048 1E-07 58.2 14.1 26 67-92 33-58 (231)
318 TIGR01351 adk adenylate kinase 97.4 0.0002 4.4E-09 66.6 4.7 38 69-110 2-39 (210)
319 PRK11889 flhF flagellar biosyn 97.4 0.011 2.4E-07 59.6 17.1 25 66-90 241-265 (436)
320 PLN02459 probable adenylate ki 97.4 0.00027 5.9E-09 67.4 5.6 53 67-123 30-82 (261)
321 PRK00279 adk adenylate kinase; 97.4 0.00032 6.9E-09 65.5 5.8 40 68-111 2-41 (215)
322 PRK05629 hypothetical protein; 97.3 0.0034 7.4E-08 62.3 13.3 124 300-437 66-190 (318)
323 TIGR01618 phage_P_loop phage n 97.3 0.00019 4.1E-09 66.9 4.0 72 67-143 13-95 (220)
324 cd00464 SK Shikimate kinase (S 97.3 0.00022 4.8E-09 62.5 4.2 31 68-100 1-31 (154)
325 PRK13949 shikimate kinase; Pro 97.3 0.00021 4.5E-09 64.2 4.1 32 67-100 2-33 (169)
326 PRK07914 hypothetical protein; 97.3 0.0023 5.1E-08 63.5 11.9 124 300-437 66-192 (320)
327 PRK06217 hypothetical protein; 97.3 0.00023 4.9E-09 64.8 4.3 32 68-101 3-34 (183)
328 PRK14526 adenylate kinase; Pro 97.3 0.00028 6.2E-09 65.6 4.9 39 68-110 2-40 (211)
329 TIGR02768 TraA_Ti Ti-type conj 97.3 0.002 4.4E-08 71.1 12.3 30 300-329 441-470 (744)
330 COG0703 AroK Shikimate kinase 97.3 0.0002 4.3E-09 63.7 3.6 33 67-101 3-35 (172)
331 PRK14530 adenylate kinase; Pro 97.3 0.00021 4.5E-09 66.8 3.9 25 67-91 4-28 (215)
332 KOG0734 AAA+-type ATPase conta 97.3 0.0016 3.6E-08 66.7 10.4 128 298-440 396-542 (752)
333 PRK14527 adenylate kinase; Pro 97.3 0.0003 6.4E-09 64.4 4.8 40 66-109 6-45 (191)
334 PRK14528 adenylate kinase; Pro 97.3 0.00036 7.7E-09 63.7 5.1 37 67-107 2-38 (186)
335 PRK14529 adenylate kinase; Pro 97.3 0.0003 6.5E-09 65.8 4.5 51 68-122 2-52 (223)
336 PF13671 AAA_33: AAA domain; P 97.2 0.00021 4.6E-09 61.7 3.2 23 69-91 2-24 (143)
337 cd00227 CPT Chloramphenicol (C 97.2 0.00027 5.9E-09 63.7 3.9 34 66-101 2-35 (175)
338 PF00437 T2SE: Type II/IV secr 97.2 0.00064 1.4E-08 65.8 6.8 99 36-140 100-208 (270)
339 cd01120 RecA-like_NTPases RecA 97.2 0.00053 1.2E-08 60.1 5.6 23 68-90 1-23 (165)
340 KOG0731 AAA+-type ATPase conta 97.2 0.0055 1.2E-07 66.2 13.9 128 298-437 403-551 (774)
341 PRK12727 flagellar biosynthesi 97.2 0.027 6E-07 58.9 18.4 25 66-90 350-374 (559)
342 TIGR00767 rho transcription te 97.2 0.0046 1E-07 62.4 12.4 28 65-92 167-194 (415)
343 COG1102 Cmk Cytidylate kinase 97.2 0.00032 7E-09 61.1 3.6 28 69-98 3-30 (179)
344 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00072 1.6E-08 57.9 5.7 36 57-92 13-48 (133)
345 cd01130 VirB11-like_ATPase Typ 97.2 0.0014 3E-08 59.8 8.0 71 66-139 25-110 (186)
346 TIGR02237 recomb_radB DNA repa 97.2 0.0015 3.2E-08 60.6 8.2 45 59-103 5-50 (209)
347 PRK06585 holA DNA polymerase I 97.2 0.005 1.1E-07 61.8 12.6 124 300-438 83-209 (343)
348 TIGR03689 pup_AAA proteasome A 97.2 0.0096 2.1E-07 62.4 15.0 74 298-383 289-380 (512)
349 PRK13900 type IV secretion sys 97.2 0.0014 3E-08 65.3 8.3 71 66-139 160-245 (332)
350 COG1485 Predicted ATPase [Gene 97.2 0.0039 8.5E-08 61.2 11.2 68 300-367 132-203 (367)
351 PRK06547 hypothetical protein; 97.2 0.00066 1.4E-08 61.0 5.6 32 66-99 15-46 (172)
352 cd02020 CMPK Cytidine monophos 97.2 0.00038 8.3E-09 60.3 3.9 30 69-100 2-31 (147)
353 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00037 8.1E-09 63.2 4.0 24 68-91 5-28 (188)
354 TIGR01448 recD_rel helicase, p 97.1 0.0018 4E-08 71.1 9.8 24 300-323 418-441 (720)
355 PRK02496 adk adenylate kinase; 97.1 0.00054 1.2E-08 62.2 4.7 24 68-91 3-26 (184)
356 PRK13948 shikimate kinase; Pro 97.1 0.00056 1.2E-08 62.1 4.7 34 65-100 9-42 (182)
357 COG2842 Uncharacterized ATPase 97.1 0.025 5.5E-07 54.4 16.0 119 300-428 167-288 (297)
358 PF12780 AAA_8: P-loop contain 97.1 0.053 1.1E-06 52.3 18.5 89 41-138 9-98 (268)
359 cd02021 GntK Gluconate kinase 97.1 0.00045 9.8E-09 60.4 3.9 23 69-91 2-24 (150)
360 PRK08154 anaerobic benzoate ca 97.1 0.00092 2E-08 66.0 6.5 36 63-100 130-165 (309)
361 COG1618 Predicted nucleotide k 97.1 0.0015 3.3E-08 57.0 6.8 24 67-90 6-29 (179)
362 cd01131 PilT Pilus retraction 97.1 0.0011 2.3E-08 61.2 6.2 68 68-138 3-83 (198)
363 PRK05057 aroK shikimate kinase 97.1 0.00061 1.3E-08 61.3 4.5 33 67-101 5-37 (172)
364 PRK06762 hypothetical protein; 97.1 0.00056 1.2E-08 60.9 4.2 25 67-91 3-27 (166)
365 COG4619 ABC-type uncharacteriz 97.1 0.016 3.5E-07 51.1 12.9 30 63-92 26-55 (223)
366 PHA02624 large T antigen; Prov 97.1 0.0012 2.7E-08 69.3 7.0 38 54-91 419-456 (647)
367 PRK13946 shikimate kinase; Pro 97.1 0.00056 1.2E-08 62.2 4.0 33 66-100 10-42 (184)
368 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0015 3.3E-08 62.4 7.2 33 69-101 2-35 (249)
369 COG3854 SpoIIIAA ncharacterize 97.1 0.002 4.4E-08 59.5 7.5 72 68-139 139-228 (308)
370 PRK03731 aroL shikimate kinase 97.1 0.00068 1.5E-08 60.7 4.5 32 67-100 3-34 (171)
371 COG1373 Predicted ATPase (AAA+ 97.1 0.0064 1.4E-07 62.2 12.1 66 300-375 96-161 (398)
372 PF09848 DUF2075: Uncharacteri 97.0 0.0031 6.8E-08 63.5 9.6 23 68-90 3-25 (352)
373 TIGR01313 therm_gnt_kin carboh 97.0 0.00053 1.2E-08 60.9 3.6 23 69-91 1-23 (163)
374 PRK13833 conjugal transfer pro 97.0 0.0019 4.1E-08 63.9 7.7 71 66-139 144-225 (323)
375 PRK06696 uridine kinase; Valid 97.0 0.0016 3.5E-08 61.1 7.0 40 67-106 23-63 (223)
376 PF13238 AAA_18: AAA domain; P 97.0 0.0005 1.1E-08 58.0 3.2 22 69-90 1-22 (129)
377 COG2804 PulE Type II secretory 97.0 0.0014 3.1E-08 67.3 6.9 97 37-140 235-338 (500)
378 cd02019 NK Nucleoside/nucleoti 97.0 0.00067 1.4E-08 51.2 3.3 22 69-90 2-23 (69)
379 TIGR02868 CydC thiol reductant 97.0 0.013 2.9E-07 62.3 14.5 35 59-93 354-388 (529)
380 cd01128 rho_factor Transcripti 97.0 0.0021 4.6E-08 61.3 7.5 27 66-92 16-42 (249)
381 COG0465 HflB ATP-dependent Zn 97.0 0.006 1.3E-07 64.5 11.3 131 299-442 243-393 (596)
382 KOG1808 AAA ATPase containing 97.0 0.0069 1.5E-07 71.0 12.7 78 300-382 509-600 (1856)
383 PHA02774 E1; Provisional 97.0 0.0023 4.9E-08 67.1 7.9 32 61-92 429-460 (613)
384 PRK13851 type IV secretion sys 97.0 0.002 4.3E-08 64.4 7.3 73 64-139 160-246 (344)
385 PF13245 AAA_19: Part of AAA d 97.0 0.00086 1.9E-08 51.6 3.6 23 68-90 12-35 (76)
386 PRK08487 DNA polymerase III su 96.9 0.0082 1.8E-07 59.8 11.6 122 300-437 73-198 (328)
387 PRK13764 ATPase; Provisional 96.9 0.0015 3.2E-08 69.6 6.5 27 66-92 257-283 (602)
388 PRK13808 adenylate kinase; Pro 96.9 0.0011 2.4E-08 65.5 5.1 38 68-109 2-39 (333)
389 PRK13894 conjugal transfer ATP 96.9 0.0022 4.8E-08 63.4 7.2 71 66-139 148-229 (319)
390 PF02562 PhoH: PhoH-like prote 96.9 0.005 1.1E-07 56.8 8.9 25 300-324 121-145 (205)
391 PRK09361 radB DNA repair and r 96.9 0.0024 5.2E-08 60.0 6.9 43 60-102 17-60 (225)
392 KOG3928 Mitochondrial ribosome 96.9 0.061 1.3E-06 53.9 16.7 108 299-407 316-452 (461)
393 KOG0479 DNA replication licens 96.9 0.038 8.2E-07 57.5 15.7 135 300-439 400-642 (818)
394 COG1936 Predicted nucleotide k 96.9 0.00087 1.9E-08 59.2 3.4 30 68-100 2-31 (180)
395 TIGR02782 TrbB_P P-type conjug 96.9 0.0021 4.5E-08 63.2 6.4 71 66-139 132-214 (299)
396 COG4088 Predicted nucleotide k 96.9 0.00076 1.6E-08 61.2 2.9 26 68-93 3-28 (261)
397 PRK06067 flagellar accessory p 96.9 0.0033 7.1E-08 59.4 7.5 30 60-89 19-48 (234)
398 TIGR01420 pilT_fam pilus retra 96.8 0.0023 5.1E-08 64.1 6.7 70 67-139 123-205 (343)
399 KOG0727 26S proteasome regulat 96.8 0.018 3.9E-07 53.9 11.8 141 284-437 224-394 (408)
400 PRK04040 adenylate kinase; Pro 96.8 0.0013 2.9E-08 60.0 4.4 31 67-97 3-33 (188)
401 COG1419 FlhF Flagellar GTP-bin 96.8 0.029 6.3E-07 56.5 14.1 31 300-335 342-374 (407)
402 PF05872 DUF853: Bacterial pro 96.8 0.0077 1.7E-07 61.1 9.7 77 287-375 244-329 (502)
403 TIGR02788 VirB11 P-type DNA tr 96.8 0.0032 7E-08 62.1 7.2 76 62-140 140-229 (308)
404 cd01394 radB RadB. The archaea 96.8 0.0079 1.7E-07 56.1 9.3 42 60-101 13-55 (218)
405 PRK13889 conjugal transfer rel 96.8 0.013 2.8E-07 66.0 12.3 32 300-331 435-466 (988)
406 PRK05907 hypothetical protein; 96.8 0.02 4.3E-07 56.5 12.3 125 300-437 71-201 (311)
407 cd03283 ABC_MutS-like MutS-lik 96.8 0.0046 1E-07 57.0 7.4 22 67-88 26-47 (199)
408 KOG1803 DNA helicase [Replicat 96.7 0.013 2.7E-07 61.2 11.0 43 299-360 359-402 (649)
409 COG3899 Predicted ATPase [Gene 96.7 0.15 3.2E-06 57.4 20.2 106 297-417 153-266 (849)
410 PF06144 DNA_pol3_delta: DNA p 96.7 0.0023 5.1E-08 57.2 4.9 107 300-415 59-170 (172)
411 PF13521 AAA_28: AAA domain; P 96.7 0.0015 3.3E-08 58.0 3.7 26 69-97 2-27 (163)
412 PRK05541 adenylylsulfate kinas 96.7 0.0017 3.6E-08 58.5 3.9 27 65-91 6-32 (176)
413 PF13479 AAA_24: AAA domain 96.7 0.0034 7.4E-08 58.5 6.1 69 67-141 4-80 (213)
414 cd01121 Sms Sms (bacterial rad 96.7 0.0056 1.2E-07 61.9 8.0 85 58-145 74-174 (372)
415 PRK10875 recD exonuclease V su 96.7 0.0025 5.5E-08 68.4 5.8 26 299-324 266-291 (615)
416 PF00004 AAA: ATPase family as 96.7 0.0043 9.4E-08 52.4 6.2 56 299-366 59-131 (132)
417 PRK08233 hypothetical protein; 96.7 0.0014 3E-08 59.1 3.2 25 67-91 4-28 (182)
418 PRK11823 DNA repair protein Ra 96.6 0.0047 1E-07 64.1 7.4 86 57-145 71-172 (446)
419 PF01745 IPT: Isopentenyl tran 96.6 0.0024 5.3E-08 58.5 4.6 35 68-104 3-37 (233)
420 PRK09376 rho transcription ter 96.6 0.0039 8.5E-08 62.7 6.4 78 66-143 169-270 (416)
421 PRK11174 cysteine/glutathione 96.6 0.031 6.6E-07 60.4 13.9 31 60-90 370-400 (588)
422 PRK01184 hypothetical protein; 96.6 0.0019 4E-08 58.7 3.9 28 68-98 3-30 (184)
423 COG1124 DppF ABC-type dipeptid 96.6 0.039 8.5E-07 51.6 12.4 44 59-102 26-69 (252)
424 PRK10263 DNA translocase FtsK; 96.6 0.043 9.4E-07 62.6 15.0 102 297-408 1139-1269(1355)
425 KOG0058 Peptide exporter, ABC 96.6 0.024 5.3E-07 60.6 12.4 41 61-101 489-529 (716)
426 PRK04132 replication factor C 96.6 0.0011 2.4E-08 73.1 2.5 49 28-82 8-56 (846)
427 COG2766 PrkA Putative Ser prot 96.6 0.018 4E-07 59.5 11.0 69 31-100 67-136 (649)
428 PHA02530 pseT polynucleotide k 96.6 0.0018 4E-08 63.5 3.8 24 67-90 3-26 (300)
429 TIGR02322 phosphon_PhnN phosph 96.6 0.0019 4.1E-08 58.3 3.6 26 67-92 2-27 (179)
430 PF13086 AAA_11: AAA domain; P 96.6 0.0022 4.8E-08 59.8 4.2 22 69-90 20-41 (236)
431 PF04665 Pox_A32: Poxvirus A32 96.6 0.16 3.5E-06 48.0 16.6 82 298-396 98-181 (241)
432 PF01583 APS_kinase: Adenylyls 96.6 0.0056 1.2E-07 53.9 6.3 60 67-126 3-71 (156)
433 PF08433 KTI12: Chromatin asso 96.6 0.0034 7.4E-08 60.6 5.5 73 69-141 4-82 (270)
434 PRK04182 cytidylate kinase; Pr 96.6 0.0022 4.7E-08 57.7 3.9 29 68-98 2-30 (180)
435 COG4618 ArpD ABC-type protease 96.6 0.016 3.4E-07 59.5 10.3 39 66-104 362-400 (580)
436 TIGR01447 recD exodeoxyribonuc 96.6 0.0086 1.9E-07 64.2 9.0 26 298-323 259-284 (586)
437 TIGR02525 plasmid_TraJ plasmid 96.6 0.0048 1E-07 62.3 6.6 71 67-140 150-236 (372)
438 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.0069 1.5E-07 52.7 6.8 74 64-140 24-99 (144)
439 PRK05800 cobU adenosylcobinami 96.6 0.008 1.7E-07 53.9 7.4 35 68-104 3-37 (170)
440 TIGR01526 nadR_NMN_Atrans nico 96.6 0.0056 1.2E-07 60.9 7.0 39 66-106 162-200 (325)
441 TIGR02173 cyt_kin_arch cytidyl 96.6 0.0023 4.9E-08 57.1 3.8 29 68-98 2-30 (171)
442 cd01129 PulE-GspE PulE/GspE Th 96.5 0.01 2.2E-07 57.3 8.5 95 37-140 57-160 (264)
443 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0083 1.8E-07 54.2 7.4 74 64-140 23-100 (177)
444 KOG0726 26S proteasome regulat 96.5 0.0077 1.7E-07 57.5 7.3 128 297-438 277-425 (440)
445 PRK13826 Dtr system oriT relax 96.5 0.025 5.3E-07 64.4 12.5 32 300-331 470-501 (1102)
446 TIGR02012 tigrfam_recA protein 96.5 0.0059 1.3E-07 60.2 6.7 82 61-144 50-148 (321)
447 PRK10078 ribose 1,5-bisphospho 96.5 0.0019 4.2E-08 58.8 3.1 25 67-91 3-27 (186)
448 TIGR03375 type_I_sec_LssB type 96.5 0.037 8E-07 61.0 13.7 33 60-92 485-517 (694)
449 TIGR02533 type_II_gspE general 96.5 0.0054 1.2E-07 64.3 6.8 95 37-140 219-322 (486)
450 cd00983 recA RecA is a bacter 96.5 0.0086 1.9E-07 59.2 7.8 82 61-144 50-148 (325)
451 KOG0652 26S proteasome regulat 96.5 0.029 6.3E-07 52.8 10.7 129 296-437 262-410 (424)
452 PLN02199 shikimate kinase 96.5 0.0033 7.2E-08 60.9 4.6 34 65-100 101-134 (303)
453 cd03216 ABC_Carb_Monos_I This 96.5 0.0088 1.9E-07 53.2 7.0 75 63-140 23-111 (163)
454 PRK11176 lipid transporter ATP 96.5 0.05 1.1E-06 58.7 14.1 34 60-93 363-396 (582)
455 PRK00889 adenylylsulfate kinas 96.5 0.0028 6.2E-08 57.0 3.9 26 66-91 4-29 (175)
456 PF02367 UPF0079: Uncharacteri 96.4 0.0043 9.3E-08 52.3 4.6 30 64-93 13-42 (123)
457 PRK11160 cysteine/glutathione 96.4 0.041 9E-07 59.2 13.3 35 59-93 359-393 (574)
458 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.011 2.4E-07 55.1 7.7 22 67-88 30-51 (213)
459 TIGR03499 FlhF flagellar biosy 96.4 0.0069 1.5E-07 59.0 6.5 25 66-90 194-218 (282)
460 KOG0738 AAA+-type ATPase [Post 96.4 0.027 5.8E-07 56.0 10.4 160 271-446 278-473 (491)
461 PRK12339 2-phosphoglycerate ki 96.4 0.0031 6.7E-08 58.0 3.8 25 67-91 4-28 (197)
462 TIGR02203 MsbA_lipidA lipid A 96.4 0.06 1.3E-06 57.8 14.2 33 61-93 353-385 (571)
463 TIGR03796 NHPM_micro_ABC1 NHPM 96.4 0.045 9.7E-07 60.5 13.5 34 60-93 499-532 (710)
464 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.14 3.1E-06 45.2 13.9 60 285-363 86-149 (159)
465 cd02027 APSK Adenosine 5'-phos 96.4 0.003 6.4E-08 55.4 3.3 22 69-90 2-23 (149)
466 TIGR02857 CydD thiol reductant 96.4 0.063 1.4E-06 57.2 14.0 36 57-92 339-374 (529)
467 TIGR01846 type_I_sec_HlyB type 96.4 0.062 1.3E-06 59.3 14.3 33 60-92 477-509 (694)
468 PRK00300 gmk guanylate kinase; 96.3 0.0034 7.4E-08 57.9 3.8 27 65-91 4-30 (205)
469 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0055 1.2E-07 58.1 5.1 44 59-102 14-58 (237)
470 COG1119 ModF ABC-type molybden 96.3 0.068 1.5E-06 50.2 12.0 30 63-92 54-83 (257)
471 COG1118 CysA ABC-type sulfate/ 96.3 0.059 1.3E-06 52.1 11.8 38 65-102 27-64 (345)
472 TIGR01193 bacteriocin_ABC ABC- 96.3 0.065 1.4E-06 59.2 14.2 35 58-92 492-526 (708)
473 KOG0729 26S proteasome regulat 96.3 0.013 2.9E-07 55.2 7.3 124 300-437 272-416 (435)
474 TIGR02204 MsbA_rel ABC transpo 96.3 0.078 1.7E-06 57.1 14.4 34 59-92 359-392 (576)
475 KOG2383 Predicted ATPase [Gene 96.3 0.016 3.4E-07 57.8 8.1 68 300-367 195-266 (467)
476 PRK13657 cyclic beta-1,2-gluca 96.3 0.068 1.5E-06 57.7 14.0 36 57-92 352-387 (588)
477 COG2805 PilT Tfp pilus assembl 96.3 0.012 2.5E-07 56.7 6.9 71 67-140 125-209 (353)
478 PRK07667 uridine kinase; Provi 96.3 0.0069 1.5E-07 55.5 5.4 35 57-91 8-42 (193)
479 PRK05986 cob(I)alamin adenolsy 96.3 0.1 2.2E-06 47.5 12.7 24 67-90 23-46 (191)
480 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.014 3E-07 51.5 7.0 74 64-140 23-109 (157)
481 PF00485 PRK: Phosphoribulokin 96.2 0.0036 7.7E-08 57.4 3.3 24 69-92 2-25 (194)
482 COG4178 ABC-type uncharacteriz 96.2 0.032 7E-07 59.2 10.7 32 60-91 413-444 (604)
483 PRK05537 bifunctional sulfate 96.2 0.0081 1.8E-07 64.2 6.3 48 41-91 370-417 (568)
484 PRK13975 thymidylate kinase; P 96.2 0.0043 9.2E-08 56.8 3.7 27 67-93 3-29 (196)
485 COG4586 ABC-type uncharacteriz 96.2 0.05 1.1E-06 51.8 10.7 43 62-104 46-88 (325)
486 COG0529 CysC Adenylylsulfate k 96.2 0.031 6.6E-07 49.8 8.7 60 66-125 23-91 (197)
487 TIGR00958 3a01208 Conjugate Tr 96.2 0.054 1.2E-06 59.9 12.9 35 59-93 500-534 (711)
488 KOG0737 AAA+-type ATPase [Post 96.2 0.018 4E-07 56.8 8.0 107 296-414 184-306 (386)
489 PRK12608 transcription termina 96.2 0.012 2.5E-07 59.0 6.8 26 67-92 134-159 (380)
490 cd03247 ABCC_cytochrome_bd The 96.2 0.016 3.5E-07 52.2 7.2 29 63-91 25-53 (178)
491 PLN02842 nucleotide kinase 96.2 0.0048 1E-07 64.2 4.2 35 70-108 1-35 (505)
492 KOG1051 Chaperone HSP104 and r 96.2 0.04 8.6E-07 61.0 11.3 101 39-147 185-298 (898)
493 cd01124 KaiC KaiC is a circadi 96.2 0.0041 8.9E-08 56.3 3.2 22 69-90 2-23 (187)
494 TIGR03263 guanyl_kin guanylate 96.2 0.0037 7.9E-08 56.4 2.9 25 67-91 2-26 (180)
495 PRK09825 idnK D-gluconate kina 96.1 0.0054 1.2E-07 55.4 3.9 26 66-91 3-28 (176)
496 KOG0740 AAA+-type ATPase [Post 96.1 0.028 6.1E-07 57.2 9.3 95 297-403 244-354 (428)
497 PLN02165 adenylate isopentenyl 96.1 0.0059 1.3E-07 60.3 4.4 32 66-99 43-74 (334)
498 TIGR00235 udk uridine kinase. 96.1 0.0049 1.1E-07 57.1 3.7 25 67-91 7-31 (207)
499 COG1855 ATPase (PilT family) [ 96.1 0.0064 1.4E-07 61.3 4.5 47 37-93 244-290 (604)
500 PRK04328 hypothetical protein; 96.1 0.0082 1.8E-07 57.4 5.2 43 60-102 17-60 (249)
No 1
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-81 Score=579.79 Aligned_cols=455 Identities=76% Similarity=1.155 Sum_probs=447.8
Q ss_pred cchhhhhhhhHHHHHHhhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHH
Q 012719 3 KMKIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTAL 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~l 82 (458)
.|+||||+|+.+.+|.++||||||||+++...+...-++++||++++++...++++++.++..++.+||.||||||||.+
T Consensus 1 ~~~ieeVkst~~~~ria~HsHvkgLGlde~g~~~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAl 80 (456)
T KOG1942|consen 1 MVKIEEVKSTGRTQRIAAHSHVKGLGLDETGNAVEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTAL 80 (456)
T ss_pred CcchhhhcccccchhhhhhhhccccCcCCCCCeeecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHH
Q 012719 83 ALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVII 162 (458)
Q Consensus 83 A~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~ 162 (458)
|-+++++||..+||+.+.+|+.++.++.+|+-+.++|++|++++.++-..+|..|+..+.|...+++.++|++.++.+++
T Consensus 81 AlaisqELG~kvPFcpmvgSEvyS~EvKKTEvLmenfRRaIglRikEtKeVYEGEVtEl~p~e~enp~ggygKtIshv~i 160 (456)
T KOG1942|consen 81 ALAISQELGPKVPFCPMVGSEVYSNEVKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPVEAENPLGGYGKTISHVVI 160 (456)
T ss_pred HHHHHHHhCCCCCcccccchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhcceeeEeccccccCCCCccCceeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC
Q 012719 163 GLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT 242 (458)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~ 242 (458)
+|++..+...+++.|.+++.++++++..||+++|.+.++.+++.||++.+...||.+...|+|.|.+++.+++++.+++|
T Consensus 161 ~LKtaKgtKqLkLdPsiyesi~kerv~~GDViYIEaNsGavKrvGRsda~ateFDLEaeeyVPlPKGeVhKkKeivQdVt 240 (456)
T KOG1942|consen 161 GLKTAKGTKQLKLDPSIYESIQKERVEVGDVIYIEANSGAVKRVGRSDAYATEFDLEAEEYVPLPKGEVHKKKEIVQDVT 240 (456)
T ss_pred EEeecCCcceeccChHHHHHHHHhhhccCcEEEEEeccchhhcccccccchhhcccccceeecCCccchhhhHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhcCCCChhhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHh
Q 012719 243 LHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRAL 322 (458)
Q Consensus 243 l~~l~~~~~~~~g~adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~l 322 (458)
+||+|..+++++|+.|+.+++.+++.+++.+|++.+|.++|+.+++|++.|.+|+++|||||||+|+|+.+++.+|.+++
T Consensus 241 LhDLD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLDiEcFTyL~kal 320 (456)
T KOG1942|consen 241 LHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHKAL 320 (456)
T ss_pred hhhcccccCCCCccchHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcchhhhcCcceEeeehhhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCeEEEecCCccccccCC-CCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhh
Q 012719 323 ESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIAR 401 (458)
Q Consensus 323 E~~~~~i~il~tn~~~~~~~~~-~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~ 401 (458)
|.+-.|++||++|++.|.++++ ++..|+++|+++++|+.+++..+|+++++++|++.+++.++++++++++.+++.++.
T Consensus 321 ES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 321 ESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred cCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 9999999999999999999996 899999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHHHHHHHHHHhhc
Q 012719 402 DTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYI 457 (458)
Q Consensus 402 ~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
..++|+++++|--+..+|...|+..|..++|+++..||+|..+|.+.+++.+.+|+
T Consensus 401 ~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~s~k~l~~~~~k~~ 456 (456)
T KOG1942|consen 401 STSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKRSAKILEESQNKYL 456 (456)
T ss_pred chhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchhhHHHHHhhhccCC
Confidence 89999999999999999999999999999999999999999999999999999985
No 2
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=100.00 E-value=1.8e-78 Score=572.44 Aligned_cols=438 Identities=58% Similarity=0.898 Sum_probs=423.4
Q ss_pred HHHHHHhhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 13 AKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
...+|.++||||+|||++++.+++..=++++||.+++++...++++++.|+..++++||.||||||||.||-++|++||.
T Consensus 12 ~~~~~i~aHSHI~GLGLdeng~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 12 GERERIAAHSHIKGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred chhcccchhccccccccCCCCCEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhcccccccc
Q 012719 93 KVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQ 172 (458)
Q Consensus 93 ~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 172 (458)
++||+.++++++++.++++++.|.++|++|++.+.++-..+|..|+..+...+..++.++|.+.+....+.|+|.|+.+.
T Consensus 92 dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~ 171 (450)
T COG1224 92 DVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKT 171 (450)
T ss_pred CCCceeeccceeeeecccHHHHHHHHHHHhhceEeeeeeEEEEEEEEEEEEeeccCCCCCccccccceEEEEEecccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccc-cccccccccccCCCcchHHHHHHHhhcCHhhHHHHhc
Q 012719 173 LKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFAT-EFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANA 251 (458)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~-~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~ 251 (458)
+++++.+++++.++++..||+++|++.++++.++||+..+.+ .||.....++|+|.+++.+++++.+.+|+||+|..++
T Consensus 172 ~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~na 251 (450)
T COG1224 172 LRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSKARAREDFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANA 251 (450)
T ss_pred eecCHHHHHHHHHhCcccCCEEEEEccccEEEEeecccccccccccccceEEEECCCCceeeeEEEEEEEEehhhhhhhc
Confidence 999999999999999999999999999999999999998886 8999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEE
Q 012719 252 RPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVI 331 (458)
Q Consensus 252 ~~~g~adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~i 331 (458)
++.|+ -.++...-++|.+++|+++|+.+++|+++|++++++|||||||+|+|+.+++.+|+++||+...|++|
T Consensus 252 r~~G~-------~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii 324 (450)
T COG1224 252 RAQGI-------LSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIII 324 (450)
T ss_pred cccch-------HhhhcCCcccCCHHHHHHHHHHHHHHHhcCcEEeecceEEEechhhhhHHHHHHHHHHhhcccCcEEE
Confidence 99993 33344444569999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHh
Q 012719 332 FATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQL 411 (458)
Q Consensus 332 l~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~l 411 (458)
++||++-|.++|+|...|+++|.+|++|+.++...||+.+|++.|++.+++.+++.++++|++++++++...|+|++++|
T Consensus 325 ~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qL 404 (450)
T COG1224 325 LATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQL 404 (450)
T ss_pred EEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHHHHHHHHHHhhc
Q 012719 412 LYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYI 457 (458)
Q Consensus 412 l~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
|.-|..+|..+|+..|..+||+++..+|+|..||+++.+.|..+|+
T Consensus 405 L~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~krSv~~v~~~~~~~~ 450 (450)
T COG1224 405 LTPASIIAKRRGSKRVEVEDVERAKELFLDVKRSVEYVEKYEGLLL 450 (450)
T ss_pred ccHHHHHHHHhCCCeeehhHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998874
No 3
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=100.00 E-value=1.2e-74 Score=556.54 Aligned_cols=397 Identities=66% Similarity=1.013 Sum_probs=322.8
Q ss_pred HHhhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccE
Q 012719 17 RVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPF 96 (458)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~ 96 (458)
|.++||||+|||+++...+....++++||.+++++...++++++.++..++++||.||||||||++|.++|++||.++||
T Consensus 1 Ri~~HSHI~GLGld~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 1 RIGAHSHIKGLGLDENGEARYIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp HHGCCTT--S--B-TTS-B-SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred CcccccccccCCcCCCCCEeeccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCC
Q 012719 97 CPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLD 176 (458)
Q Consensus 97 i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (458)
+.++++++++.++.+||.|.++|++|.+.+.++-..+|..|+..+...+..++.+ |.+.+....+.|+|.|+...++++
T Consensus 81 ~~isgSEiyS~e~kKTE~L~qa~RraIGvrIkE~~eV~EGeVvei~~~~~~~~~~-~~~~~~~~~i~LkT~~~~~~l~l~ 159 (398)
T PF06068_consen 81 VSISGSEIYSSEVKKTEALTQAFRRAIGVRIKEEKEVYEGEVVEIKIEEAENPLN-YGKTIKHGKITLKTTDMEKTLKLG 159 (398)
T ss_dssp EEEEGGGG-BTTC-HHHHHHHHHHCSEEEEEEEEECEEEEEEEEEEE---E-TTS--SSSS-EEEEEEEETTCEEEEEE-
T ss_pred eEcccceeeecccCchHHHHHHHHHhheEEEEEEEEEEEEEEEEEEEeeccCccc-cCCcceEEEEEEEEcCCceEecCC
Confidence 9999999999999999999999999999999999999999999999987777666 778888888999999999999999
Q ss_pred hhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCCh
Q 012719 177 PTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGG 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~ 256 (458)
+++++++.++++..||+++|++.++.+.++||++.+...||.+...++|+|.|++++++++.+++|+||+|.++++++|+
T Consensus 160 ~~i~~~l~kekV~~GDVI~Id~~tG~V~k~Grs~~~~~~~D~~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q~~ 239 (398)
T PF06068_consen 160 PKIYEQLQKEKVRVGDVIYIDKNTGRVKKVGRSDSYAKDYDLEATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQDF 239 (398)
T ss_dssp CHHHHHHHHTT--TTCEEEEETTTTEEEEEEEECCCS-TTSECCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC-----
T ss_pred HHHHHHHHHhCCccCcEEEEECCCCeEEEEecccchhhccccccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred hhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCC
Q 012719 257 QDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNR 336 (458)
Q Consensus 257 adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~ 336 (458)
.+++..++.++.+||++++|+++|+.+++|+++++++++||||||||+|+|+.+++.+|+++||...+|++|++|||
T Consensus 240 ---lslf~~~~~~~~~EI~~elR~eInk~V~~wieegkAelvpGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNR 316 (398)
T PF06068_consen 240 ---LSLFGQLFKGDTGEITDELREEINKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNR 316 (398)
T ss_dssp -------------------HHHHHHHHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-
T ss_pred ---HHHHHhhcCCCcccchHHHHHHHhHHHHHHHhcCceEEecceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCc
Confidence 55677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHH
Q 012719 337 GICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPAS 416 (458)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~ 416 (458)
+.+.++++++..|+++|.+|++||.++...||+.+|+.+|++.+|+.+++.++++++++|.+++.+.|+|+|+++|..|.
T Consensus 317 g~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 317 GITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred eeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999998765
Q ss_pred H
Q 012719 417 V 417 (458)
Q Consensus 417 ~ 417 (458)
.
T Consensus 397 i 397 (398)
T PF06068_consen 397 I 397 (398)
T ss_dssp H
T ss_pred c
Confidence 3
No 4
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=100.00 E-value=4e-70 Score=504.48 Aligned_cols=444 Identities=45% Similarity=0.745 Sum_probs=420.7
Q ss_pred cchhhhhhhhHHHHHHhhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHH
Q 012719 3 KMKIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTAL 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~l 82 (458)
.++.-|++...+++|.++||||+|||++...+|.+.-++.+||-.++++...++++++.|+..++.+|+.|+||||||.+
T Consensus 3 ~~~~~e~rDv~~veri~aHSHI~GlGldd~le~~~~s~GmVGQ~~AR~Aagvi~kmi~egkiaGraiLiaG~pgtGKtAi 82 (454)
T KOG2680|consen 3 TLDLIEIRDVTRVERIGAHSHIRGLGLDDVLEPRYVSEGMVGQVKARKAAGVILKMIREGKIAGRAILIAGQPGTGKTAI 82 (454)
T ss_pred ccccccccchhhhhhccchhhccccCCCcccCcccccccchhhHHHHHHhHHHHHHHHcCcccceEEEEecCCCCCceee
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHH
Q 012719 83 ALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVII 162 (458)
Q Consensus 83 A~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~ 162 (458)
|-.+++.|+...||..++++++++-++.+++++.++|+++.+.++++...++..|+..+.-.|..++ +++.+. .+
T Consensus 83 Amg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRksiGvrIKEetevIEGEVVeiqidRp~tg---~g~k~G--Kl 157 (454)
T KOG2680|consen 83 AMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRKSIGVRIKEETEVIEGEVVEIQIDRPATG---MGSKVG--KL 157 (454)
T ss_pred eeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHHhhceEeeheeeeecceEEEEEeeccccC---cCcccc--ee
Confidence 9999999999999999999999999999999999999999999999999999999999886665442 222222 25
Q ss_pred hhccccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccc--cccccccCCCcchHHHHHHHhh
Q 012719 163 GLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDL--EAEEYVPLPKGEVHKKKEIVQD 240 (458)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~--~~~~~v~~p~~~~~~r~~i~~~ 240 (458)
.+++.||++.|+++.++.+.+.++++..||++.|+...+++..+||+..+.++||. ....+++||+++..+|++.++.
T Consensus 158 t~kTtdMEt~ydlG~Kmi~~l~KeKV~aGDVI~idka~GkitKlGrSf~rsrdyDamG~~tkfVqCPeGElqkrkevvht 237 (454)
T KOG2680|consen 158 TLKTTDMETIYDLGMKMIESLTKEKVQAGDVITIDKASGKITKLGRSFTRSRDYDAMGSQTKFVQCPEGELQKRKEVVHT 237 (454)
T ss_pred EEeecchhhHHHHHHHHHHHhhHhhccCCceEEEEcccceeehhhccccccccCCccCCccceecCCchhhhheeeeeEe
Confidence 78999999999999999999999999999999999999999999999999999998 4778999999999999999999
Q ss_pred cCHhhHHHHhcCCCChhhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHH
Q 012719 241 VTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNR 320 (458)
Q Consensus 241 ~~l~~l~~~~~~~~g~adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~ 320 (458)
+++|++|.++++++|| .++|.++.++|.+++|+++|+++.+|.+||++++++|||||||+|+|+.+++.+|++
T Consensus 238 vsLHeIDViNSrtqG~-------lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFIDEvHMLDIEcFsFlNr 310 (454)
T KOG2680|consen 238 VSLHEIDVINSRTQGF-------LALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNR 310 (454)
T ss_pred eeecccccccccccce-------EEEEeCCcccccHHHHHHHHHHHHHHHhcCCeeeccceEEEeeehhhhhHHHHHHHH
Confidence 9999999999999995 568899999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHh
Q 012719 321 ALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIA 400 (458)
Q Consensus 321 ~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~ 400 (458)
++|+-..|+++++||++.+.++++++..|+++|-.|++|+.++...||+.+++.+||..+|+.+++.+++++++.+..++
T Consensus 311 AlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~ 390 (454)
T KOG2680|consen 311 ALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIG 390 (454)
T ss_pred HhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHHHHHHHHHHhhcC
Q 012719 401 RDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYIT 458 (458)
Q Consensus 401 ~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (458)
...++|++++++..+...+..+....++.+||+++..||||-.||++++.+|+..|+.
T Consensus 391 ~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs~~yl~E~~~~y~~ 448 (454)
T KOG2680|consen 391 EATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRSMKYLTEYQSGYLF 448 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhhhHHHHHhhhcccc
Confidence 8899999999999999999888888899999999999999999999999999999974
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-35 Score=293.12 Aligned_cols=366 Identities=23% Similarity=0.299 Sum_probs=271.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH-------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI-------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~-------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.++.+|.+|.|.+.....|..++..+ ..|..|++++||+||||||||+||+++|.+++ +||+.++++++++
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf~~isApeivS 261 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPFLSISAPEIVS 261 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--CceEeecchhhhc
Confidence 34668999999999988887777433 56888999999999999999999999999999 9999999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
++.|++| .++++|++|... +||++||||+|+|.|+|.....+.-.|.+.+++..| |.+..
T Consensus 262 GvSGESEkkiRelF~~A~~~---aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~m----------------D~l~~ 322 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSN---APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSM----------------DELSN 322 (802)
T ss_pred ccCcccHHHHHHHHHHHhcc---CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhh----------------hcccc
Confidence 9999999 699999999974 499999999999999998866666678888888664 44432
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH----h---hHHHHhcCCCCh--
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL----H---DLDAANARPQGG-- 256 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l----~---~l~~~~~~~~g~-- 256 (458)
+.. .|+-|+|+++||++..++.++++.+|||.++.+.+|.. ..|.+|++.+.. . ++..++..|+||
T Consensus 323 ~~~-~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e----~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVG 397 (802)
T KOG0733|consen 323 EKT-KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSE----TAREEILRIICRGLRLSGDFDFKQLAKLTPGFVG 397 (802)
T ss_pred ccc-CCCCeEEEecCCCCcccCHHHhccccccceeeecCCch----HHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccc
Confidence 222 46778888888899999999999999999988888754 447777766443 2 889999999998
Q ss_pred hhHHHHHHhh--------ccchh----------H-----------HH---------------------------------
Q 012719 257 QDILSLMGQM--------MKPRK----------T-----------EI--------------------------------- 274 (458)
Q Consensus 257 adl~~l~~~~--------~~~~~----------~-----------~i--------------------------------- 274 (458)
||+.+|+... +.... . -+
T Consensus 398 ADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~ 477 (802)
T KOG0733|consen 398 ADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLE 477 (802)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhc
Confidence 9999887442 21000 0 00
Q ss_pred --------------------------------------hHHHHHHHH---------------------------------
Q 012719 275 --------------------------------------TDKLRQEIN--------------------------------- 283 (458)
Q Consensus 275 --------------------------------------~~~~~~~i~--------------------------------- 283 (458)
..++|.+++
T Consensus 478 ~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCG 557 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCG 557 (802)
T ss_pred cceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCcc
Confidence 011222222
Q ss_pred ----------------------HHHHHHHhhccc----------cccceEEEEcccchhc-----------HHHHHHHHH
Q 012719 284 ----------------------KVVNRFIDEGAA----------ELVPGVLFIDEVHMLD-----------MECFSYLNR 320 (458)
Q Consensus 284 ----------------------~~~~~~~~~~~~----------~~~~~Vl~IDE~~~l~-----------~~~~~~Ll~ 320 (458)
+.+++|+.|... ...+.|+|+||++.|. ..++|.||.
T Consensus 558 KTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLt 637 (802)
T KOG0733|consen 558 KTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLT 637 (802)
T ss_pred HHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHH
Confidence 566778776543 4567899999999995 358999999
Q ss_pred HhhccCC--C-eEEEecCCccccccCCCCCCCCCCChhHh--hhhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHH-H
Q 012719 321 ALESSLS--P-IVIFATNRGICNIRGTDMNSPHGIPLDLL--DRLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEES-L 393 (458)
Q Consensus 321 ~lE~~~~--~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~--sR~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l 393 (458)
-|+.... . ++|-+| |.|..+.|+++ .|+..+ .++.++.+|...||+...++....+++++ +
T Consensus 638 ElDGl~~R~gV~viaAT------------NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl 705 (802)
T KOG0733|consen 638 ELDGLEERRGVYVIAAT------------NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDL 705 (802)
T ss_pred HhcccccccceEEEeec------------CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCH
Confidence 9986533 3 555566 66788888888 366555 89999999999999999886665555543 5
Q ss_pred HHHHHHhh--cCCHHHHHHhhHHHHHHHhhhC-------CC---------CccHHHHHHHHH
Q 012719 394 AHLGEIAR--DTSLRHAVQLLYPASVVAKMNG-------RD---------SICKADVEEVKA 437 (458)
Q Consensus 394 ~~i~~~~~--~g~~r~a~~ll~~a~~~a~~~~-------~~---------~it~~~v~~~~~ 437 (458)
+.|+...+ ..+-.++..+++-|...|.... .. .+|..|.++|+.
T Consensus 706 ~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~ 767 (802)
T KOG0733|consen 706 DEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQ 767 (802)
T ss_pred HHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHH
Confidence 56665431 2333444445555544443211 00 256668888887
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1e-31 Score=256.09 Aligned_cols=240 Identities=23% Similarity=0.305 Sum_probs=182.7
Q ss_pred hcccCCCCCccCCCCCCccccccchHHHHHHHHHHHH--------HHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 21 HTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVD--------MIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~--------~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
++.++...++ -.|..+++|+.|+++.++.+++.+. +-+-|..||+++|||||||||||.||+|+|++.+
T Consensus 134 Dp~V~~M~v~--e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~- 210 (406)
T COG1222 134 DPRVSVMEVE--EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD- 210 (406)
T ss_pred Cchhheeeec--cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC-
Confidence 3444544444 4477899999999999999998885 3366889999999999999999999999999999
Q ss_pred CccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccc
Q 012719 93 KVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTK 171 (458)
Q Consensus 93 ~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 171 (458)
.-|+.+.+|+++.+|+|+.+ .++++|+.|+. ++||||||||+|++..+|.+...++ ++.+...|++|.++
T Consensus 211 -AtFIrvvgSElVqKYiGEGaRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~g-DrEVQRTmleLL~q---- 281 (406)
T COG1222 211 -ATFIRVVGSELVQKYIGEGARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSG-DREVQRTMLELLNQ---- 281 (406)
T ss_pred -ceEEEeccHHHHHHHhccchHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCc-hHHHHHHHHHHHHh----
Confidence 45999999999999999999 59999999997 6699999999999999998775443 66777777776555
Q ss_pred cccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHh-------
Q 012719 172 QLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLH------- 244 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~------- 244 (458)
+|+|. ..+++-+|.||| ++..++++.-+.+|||+ .+.+|.| +...|.+|++..+..
T Consensus 282 --------lDGFD----~~~nvKVI~ATN-R~D~LDPALLRPGR~DR--kIEfplP--d~~gR~~Il~IHtrkM~l~~dv 344 (406)
T COG1222 282 --------LDGFD----PRGNVKVIMATN-RPDILDPALLRPGRFDR--KIEFPLP--DEEGRAEILKIHTRKMNLADDV 344 (406)
T ss_pred --------ccCCC----CCCCeEEEEecC-CccccChhhcCCCcccc--eeecCCC--CHHHHHHHHHHHhhhccCccCc
Confidence 66665 567777777666 44444444444555544 4555555 667798888776532
Q ss_pred hHHHHhcCCCCh--hhHHHHHHhhc----cchhHHHh-HHHHHHHHHHHHHH
Q 012719 245 DLDAANARPQGG--QDILSLMGQMM----KPRKTEIT-DKLRQEINKVVNRF 289 (458)
Q Consensus 245 ~l~~~~~~~~g~--adl~~l~~~~~----~~~~~~i~-~~~~~~i~~~~~~~ 289 (458)
|++.++..++|+ ||+.++|..+. +.++..++ .++.+.+.++++..
T Consensus 345 d~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 345 DLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred CHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 899999999996 99999986632 22333333 57777777766644
No 7
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.97 E-value=9.3e-29 Score=229.18 Aligned_cols=243 Identities=26% Similarity=0.327 Sum_probs=193.1
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhh
Q 012719 30 EANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 30 ~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~ 109 (458)
+....|+ .|+|++||+++|+.++.++.+.+....+.-|+||+||||.||||||..+|++++.+ +-..+++.
T Consensus 17 e~~lRP~-~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~tsGp~------ 87 (332)
T COG2255 17 ERSLRPK-TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LKITSGPA------ 87 (332)
T ss_pred hcccCcc-cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEeccccc------
Confidence 3445564 59999999999999999999999888888899999999999999999999999844 22222211
Q ss_pred hhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhccc
Q 012719 110 KKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVA 189 (458)
Q Consensus 110 ~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
T Consensus 88 -------------------------------------------------------------------------------- 87 (332)
T COG2255 88 -------------------------------------------------------------------------------- 87 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhhccc
Q 012719 190 VGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKP 269 (458)
Q Consensus 190 ~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~~~~ 269 (458)
+.++ .|+.+++..+-.+
T Consensus 88 -------------leK~--------------------------------------------------gDlaaiLt~Le~~ 104 (332)
T COG2255 88 -------------LEKP--------------------------------------------------GDLAAILTNLEEG 104 (332)
T ss_pred -------------ccCh--------------------------------------------------hhHHHHHhcCCcC
Confidence 1111 1344444443333
Q ss_pred hhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCC--C--
Q 012719 270 RKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT--D-- 345 (458)
Q Consensus 270 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~--~-- 345 (458)
-||||||+|++++.+...|..+||++..+++| +..+...+++.. +
T Consensus 105 ------------------------------DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~I-G~gp~Arsv~ldLppFT 153 (332)
T COG2255 105 ------------------------------DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIII-GKGPAARSIRLDLPPFT 153 (332)
T ss_pred ------------------------------CeEEEehhhhcChhHHHHhhhhhhheeEEEEE-ccCCccceEeccCCCee
Confidence 79999999999999999999999998766555 444444444333 1
Q ss_pred ----CCCCCCCChhHhhhhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 346 ----MNSPHGIPLDLLDRLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 346 ----~~~~~~l~~~l~sR~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
.+....|+.+|++||+++ ++..|+.+|+.+|+++.++..+++++++++..|+..| +|.||-|.++|++..++|.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS-RGTPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRS-RGTPRIANRLLRRVRDFAQ 232 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhc-cCCcHHHHHHHHHHHHHHH
Confidence 578889999999999988 9999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhCCCCccHHHHHHHHHhhhch-----HHHHHHHHHHHHhh
Q 012719 421 MNGRDSICKADVEEVKALYLDA-----KSSAKLLQEQQEKY 456 (458)
Q Consensus 421 ~~~~~~it~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~ 456 (458)
-.+...|+.+-+..++..+-=+ ..+.+++..-.++|
T Consensus 233 V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred HhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHh
Confidence 9999999999999998854322 12445555444444
No 8
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=5.6e-30 Score=233.44 Aligned_cols=119 Identities=26% Similarity=0.336 Sum_probs=89.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCC--------CCCCCCCCChhHhhhhccc-ccCCCCH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT--------DMNSPHGIPLDLLDRLVII-RTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~--------~~~~~~~l~~~l~sR~~~i-~~~~~~~ 370 (458)
.||||||+|++++..++.|+.+||+....++| +..+....++.. ..+....|+++|++||+++ ++..|+.
T Consensus 103 ~ILFIDEIHRlnk~~qe~LlpamEd~~idiii-G~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~ 181 (233)
T PF05496_consen 103 DILFIDEIHRLNKAQQEILLPAMEDGKIDIII-GKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSE 181 (233)
T ss_dssp -EEEECTCCC--HHHHHHHHHHHHCSEEEEEB-SSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----TH
T ss_pred cEEEEechhhccHHHHHHHHHHhccCeEEEEe-ccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCH
Confidence 79999999999999999999999986432221 222211111111 1377789999999999998 8999999
Q ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 371 AEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
+|+.+|+++.+...++.++++++..|+..| +|.||-|.++|+++.++|.
T Consensus 182 ~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs-rGtPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 182 EELAKIVKRSARILNIEIDEDAAEEIARRS-RGTPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp HHHHHHHHHCCHCTT-EE-HHHHHHHHHCT-TTSHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999988764
No 9
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.6e-29 Score=258.04 Aligned_cols=125 Identities=31% Similarity=0.377 Sum_probs=117.6
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
.++|++|||+|+|+..++|+|||++|+||.+ +|||+| +++.++|++++|||+.+.|..++.+++...
T Consensus 119 ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlAT------------Te~~Kip~TIlSRcq~f~fkri~~~~I~~~ 186 (515)
T COG2812 119 RYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT------------TEPQKIPNTILSRCQRFDFKRLDLEEIAKH 186 (515)
T ss_pred cceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEec------------CCcCcCchhhhhccccccccCCCHHHHHHH
Confidence 3499999999999999999999999999999 899999 999999999999999999999999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
|..++.++++.++++++..|++.+ +|++|+++.+|+.+..+. .+.||.+.|+..+++.
T Consensus 187 L~~i~~~E~I~~e~~aL~~ia~~a-~Gs~RDalslLDq~i~~~----~~~It~~~v~~~lG~~ 244 (515)
T COG2812 187 LAAILDKEGINIEEDALSLIARAA-EGSLRDALSLLDQAIAFG----EGEITLESVRDMLGLT 244 (515)
T ss_pred HHHHHHhcCCccCHHHHHHHHHHc-CCChhhHHHHHHHHHHcc----CCcccHHHHHHHhCCC
Confidence 999999999999999999999999 999999999999887764 2679999999888743
No 10
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=4e-29 Score=253.28 Aligned_cols=123 Identities=24% Similarity=0.306 Sum_probs=113.3
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|+|+.+++|+||+.||+++.+ ++|++| +.+..|+++++|||+.+.|.+++.+++.++|
T Consensus 122 ~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT------------te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L 189 (484)
T PRK14956 122 YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT------------TEFHKIPETILSRCQDFIFKKVPLSVLQDYS 189 (484)
T ss_pred CEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec------------CChhhccHHHHhhhheeeecCCCHHHHHHHH
Confidence 389999999999999999999999999988 778888 7889999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+.+++.+++.++++++..|++.+ +|++|.|+++|+.+...+ .+.||.+.|..++++
T Consensus 190 ~~i~~~Egi~~e~eAL~~Ia~~S-~Gd~RdAL~lLeq~i~~~----~~~it~~~V~~~lg~ 245 (484)
T PRK14956 190 EKLCKIENVQYDQEGLFWIAKKG-DGSVRDMLSFMEQAIVFT----DSKLTGVKIRKMIGY 245 (484)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CChHHHHHHHHHHHHHhC----CCCcCHHHHHHHhCC
Confidence 99999999999999999999999 999999999999776542 335999999988764
No 11
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.96 E-value=1.2e-28 Score=230.70 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=100.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+|+||+|.|+.++|++|+++||+++.. .||+.+ ++...|++++.|||+.++|+++.++++.+.|+
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc------------nylsrii~pi~SRC~KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC------------NYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLE 198 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc------------CChhhCChHHHhhHHHhcCCCcchHHHHHHHH
Confidence 99999999999999999999999997766 899999 88999999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASV 417 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~ 417 (458)
.+|.++|+.++++++++|++.+ .||+|.|+..|+.+..
T Consensus 199 ~Ia~~E~v~~d~~al~~I~~~S-~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 199 KIASKEGVDIDDDALKLIAKIS-DGDLRRAITTLQSLSL 236 (346)
T ss_pred HHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHhhc
Confidence 9999999999999999999999 9999999999997765
No 12
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.2e-28 Score=244.60 Aligned_cols=368 Identities=24% Similarity=0.309 Sum_probs=271.3
Q ss_pred ccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhh
Q 012719 40 AGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKK 111 (458)
Q Consensus 40 ~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~ 111 (458)
+++.|.......+..++.+. ..+..+++++|+|||||||||.+++++|++.+ ..++.++++++++++.|+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~--a~~~~i~~peli~k~~gE 261 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG--AFLFLINGPELISKFPGE 261 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC--ceeEecccHHHHHhcccc
Confidence 68888888888887777533 34667789999999999999999999999999 669999999999999999
Q ss_pred hH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhcccc
Q 012719 112 TE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAV 190 (458)
Q Consensus 112 ~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (458)
++ .++++|..|...+. |+++||||+|+++|++..... ...|.+.+++ .| +|.+. ..
T Consensus 262 te~~LR~~f~~a~k~~~--psii~IdEld~l~p~r~~~~~-~e~Rv~sqll-tL---------------~dg~~----~~ 318 (693)
T KOG0730|consen 262 TESNLRKAFAEALKFQV--PSIIFIDELDALCPKREGADD-VESRVVSQLL-TL---------------LDGLK----PD 318 (693)
T ss_pred hHHHHHHHHHHHhccCC--CeeEeHHhHhhhCCcccccch-HHHHHHHHHH-HH---------------HhhCc----Cc
Confidence 99 69999999986332 999999999999999876633 2345555544 32 44443 33
Q ss_pred CCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC-------HhhHHHHhcCCCCh--hhHHH
Q 012719 191 GDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT-------LHDLDAANARPQGG--QDILS 261 (458)
Q Consensus 191 ~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~-------l~~l~~~~~~~~g~--adl~~ 261 (458)
+.++ +.++++++..++.+.++ +|||.+..+.+|...+ |.++++.++ ..++..++..++|| +|+.+
T Consensus 319 ~~vi-vl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~----RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~ 392 (693)
T KOG0730|consen 319 AKVI-VLAATNRPDSLDPALRR-GRFDREVEIGIPGSDG----RLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAA 392 (693)
T ss_pred CcEE-EEEecCCccccChhhhc-CCCcceeeecCCCchh----HHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHH
Confidence 4444 45667788888888888 9999988877775544 666665433 23788889999998 89998
Q ss_pred HHHhhccchhHH-------------------------------H--hHHHHHHHH-------------------------
Q 012719 262 LMGQMMKPRKTE-------------------------------I--TDKLRQEIN------------------------- 283 (458)
Q Consensus 262 l~~~~~~~~~~~-------------------------------i--~~~~~~~i~------------------------- 283 (458)
++.........+ | -++++++++
T Consensus 393 l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVL 472 (693)
T KOG0730|consen 393 LCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVL 472 (693)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEE
Confidence 876543221111 0 133444443
Q ss_pred ------------------------------HHHHHHHhhccc----------cccceEEEEcccchhc-----------H
Q 012719 284 ------------------------------KVVNRFIDEGAA----------ELVPGVLFIDEVHMLD-----------M 312 (458)
Q Consensus 284 ------------------------------~~~~~~~~~~~~----------~~~~~Vl~IDE~~~l~-----------~ 312 (458)
+...+|..++.. ...+.|+|+||++.+. .
T Consensus 473 lyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~ 552 (693)
T KOG0730|consen 473 LYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTD 552 (693)
T ss_pred EECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHH
Confidence 233455544332 3456799999999984 4
Q ss_pred HHHHHHHHHhhccC--CC-eEEEecCCccccccCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCC
Q 012719 313 ECFSYLNRALESSL--SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEI 386 (458)
Q Consensus 313 ~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~ 386 (458)
.+.+.||+.|+..- .. ++|-+| |.|..|.+++++ |+..+ ++++++.+...+||+..+++.
T Consensus 553 RVlsqLLtEmDG~e~~k~V~ViAAT------------NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm-- 618 (693)
T KOG0730|consen 553 RVLSQLLTEMDGLEALKNVLVIAAT------------NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM-- 618 (693)
T ss_pred HHHHHHHHHcccccccCcEEEEecc------------CChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--
Confidence 57888999888653 34 555556 778999999998 99655 999999999999999887764
Q ss_pred ccCHH-HHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCC--CCccHHHHHHHHHhhhchHHHH--HHHHHHHHh
Q 012719 387 VLDEE-SLAHLGEIARDTSLRHAVQLLYPASVVAKMNGR--DSICKADVEEVKALYLDAKSSA--KLLQEQQEK 455 (458)
Q Consensus 387 ~i~~~-~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~--~~it~~~v~~~~~~~~~~~~~~--~~~~~~~~~ 455 (458)
.++++ -++.|++.....|-+....+++.|...|....- ..|+.+|.++++. ..+++. ...+.|+.+
T Consensus 619 p~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~---~~r~s~~~~~~~~Ye~f 689 (693)
T KOG0730|consen 619 PFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALK---AVRPSLTSELLEKYEDF 689 (693)
T ss_pred CCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH---hhcccCCHHHHHHHHHH
Confidence 44554 578888887556889999999999998876643 5799999999988 333332 444555543
No 13
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=224.78 Aligned_cols=231 Identities=23% Similarity=0.288 Sum_probs=191.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHHh----cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 32 NGNAVPLAAGFVGQVEAREAAGLVVDMIRQ----KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 32 ~~~~~~~l~~liG~~~~~~~l~~l~~~~~~----~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
-..++.+|+|++||+++|..++.+.+++++ |...|+++|||||||||||++|++||.+.+ +||+.+.+.++++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~vkat~liGe 190 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKATELIGE 190 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--CceEEechHHHHHH
Confidence 344677899999999999999999998865 577789999999999999999999999998 89999999999999
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
++|..+ .+++++..|... +|||+|+||+|+|.-.|.= +.+
T Consensus 191 hVGdgar~Ihely~rA~~~---aPcivFiDE~DAiaLdRry---------------------------------Qel--- 231 (368)
T COG1223 191 HVGDGARRIHELYERARKA---APCIVFIDELDAIALDRRY---------------------------------QEL--- 231 (368)
T ss_pred HhhhHHHHHHHHHHHHHhc---CCeEEEehhhhhhhhhhhH---------------------------------HHh---
Confidence 999988 699999999874 4999999999998754321 000
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
.||
T Consensus 232 ---RGD-------------------------------------------------------------------------- 234 (368)
T COG1223 232 ---RGD-------------------------------------------------------------------------- 234 (368)
T ss_pred ---ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCC---eEEEecCCccccccC
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSP---IVIFATNRGICNIRG 343 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~---i~il~tn~~~~~~~~ 343 (458)
-.+.+|+||.-|+..... +.|.+|
T Consensus 235 --------------------------------------------VsEiVNALLTelDgi~eneGVvtIaaT--------- 261 (368)
T COG1223 235 --------------------------------------------VSEIVNALLTELDGIKENEGVVTIAAT--------- 261 (368)
T ss_pred --------------------------------------------HHHHHHHHHHhccCcccCCceEEEeec---------
Confidence 014567777777765433 677777
Q ss_pred CCCCCCCCCChhHhhhh-cccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHH-HHhhHHHHHHHhh
Q 012719 344 TDMNSPHGIPLDLLDRL-VIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHA-VQLLYPASVVAKM 421 (458)
Q Consensus 344 ~~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a-~~ll~~a~~~a~~ 421 (458)
|.|.-|.++++||| ..|.|..++++|..+|+..-+++..+.++-. +++++..+..-|.|.. ...|..|..-|..
T Consensus 262 ---N~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 262 ---NRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred ---CChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 78899999999999 4679999999999999999999999998888 8899988844466654 3567777778888
Q ss_pred hCCCCccHHHHHHHHH
Q 012719 422 NGRDSICKADVEEVKA 437 (458)
Q Consensus 422 ~~~~~it~~~v~~~~~ 437 (458)
.++..|+.+|++.|+.
T Consensus 338 ed~e~v~~edie~al~ 353 (368)
T COG1223 338 EDREKVEREDIEKALK 353 (368)
T ss_pred hchhhhhHHHHHHHHH
Confidence 8999999999999887
No 14
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-29 Score=255.09 Aligned_cols=218 Identities=23% Similarity=0.322 Sum_probs=173.7
Q ss_pred hhcccCCCCCcc--CCCCCCccccccchHHHHHHHHHHHH--------HHHhcccCCceEEEEcCCCChHHHHHHHHHHH
Q 012719 20 AHTHIKGLGLEA--NGNAVPLAAGFVGQVEAREAAGLVVD--------MIRQKKMAGRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 20 ~~~~~~~~~~~~--~~~~~~~l~~liG~~~~~~~l~~l~~--------~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
+-+.|+..++-+ ...|+.+|+||.|++++|..++..+. +.+-|..|++++|||||||||||++|+++|.+
T Consensus 412 A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 412 ALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred HHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 445556565544 33478899999999999999998774 45778888999999999999999999999999
Q ss_pred hCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhcccc
Q 012719 90 LGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVK 168 (458)
Q Consensus 90 l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 168 (458)
.+ .+|+.+++++++++|+|+.| .+++.|++|+... |||+|+||+|++++.|+++..+...|+++++|.+|
T Consensus 492 ~~--~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a---P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm---- 562 (693)
T KOG0730|consen 492 AG--MNFLSVKGPELFSKYVGESERAIREVFRKARQVA---PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM---- 562 (693)
T ss_pred hc--CCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC---CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc----
Confidence 99 56999999999999999999 6999999999854 99999999999999998776666788888888774
Q ss_pred ccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhh----cCHh
Q 012719 169 GTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQD----VTLH 244 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~----~~l~ 244 (458)
|++. ....|+|.+.||++..++.+.-+.+|||. .+|+|.| +...|.+|++. +..+
T Consensus 563 ------------DG~e-----~~k~V~ViAATNRpd~ID~ALlRPGRlD~--iiyVplP--D~~aR~~Ilk~~~kkmp~~ 621 (693)
T KOG0730|consen 563 ------------DGLE-----ALKNVLVIAATNRPDMIDPALLRPGRLDR--IIYVPLP--DLEARLEILKQCAKKMPFS 621 (693)
T ss_pred ------------cccc-----ccCcEEEEeccCChhhcCHHHcCCcccce--eEeecCc--cHHHHHHHHHHHHhcCCCC
Confidence 3332 22345555556566555555555555655 8899998 56678887754 3333
Q ss_pred ---hHHHHhcCCCCh--hhHHHHHHhhc
Q 012719 245 ---DLDAANARPQGG--QDILSLMGQMM 267 (458)
Q Consensus 245 ---~l~~~~~~~~g~--adl~~l~~~~~ 267 (458)
|++.++..|+|| ||+..+|+..-
T Consensus 622 ~~vdl~~La~~T~g~SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 622 EDVDLEELAQATEGYSGAEIVAVCQEAA 649 (693)
T ss_pred ccccHHHHHHHhccCChHHHHHHHHHHH
Confidence 889999999998 99999998753
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.6e-29 Score=248.73 Aligned_cols=219 Identities=21% Similarity=0.273 Sum_probs=179.0
Q ss_pred HhhhcccCCCCCccCCC--CCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHH
Q 012719 18 VAAHTHIKGLGLEANGN--AVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGIC 87 (458)
Q Consensus 18 ~~~~~~~~~~~~~~~~~--~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA 87 (458)
..+-++|++...-+.|- |+.+|+||.|+++++..|...+-+. .-|..++.++||+||||||||.||+|+|
T Consensus 487 ~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVA 566 (802)
T KOG0733|consen 487 EEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVA 566 (802)
T ss_pred HHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHh
Confidence 55678888887777554 8899999999999999998877322 4467778999999999999999999999
Q ss_pred HHhCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhcc
Q 012719 88 QELGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKT 166 (458)
Q Consensus 88 ~~l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (458)
++.+ ..|+.+.++++..+|+|+.| +++++|.+|+. ++|||||+||+|+|++.|+...+....|.++++|.+|
T Consensus 567 NEag--~NFisVKGPELlNkYVGESErAVR~vFqRAR~---saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtEl-- 639 (802)
T KOG0733|consen 567 NEAG--ANFISVKGPELLNKYVGESERAVRQVFQRARA---SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTEL-- 639 (802)
T ss_pred hhcc--CceEeecCHHHHHHHhhhHHHHHHHHHHHhhc---CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHh--
Confidence 9999 56999999999999999999 69999999997 5599999999999999999887778899999999885
Q ss_pred ccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH---
Q 012719 167 VKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL--- 243 (458)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l--- 243 (458)
|++. .-..|+|++.||++...+.+.-+.+|||. ..||++| +...|..|+..++-
T Consensus 640 --------------DGl~-----~R~gV~viaATNRPDiIDpAiLRPGRlDk--~LyV~lP--n~~eR~~ILK~~tkn~k 696 (802)
T KOG0733|consen 640 --------------DGLE-----ERRGVYVIAATNRPDIIDPAILRPGRLDK--LLYVGLP--NAEERVAILKTITKNTK 696 (802)
T ss_pred --------------cccc-----cccceEEEeecCCCcccchhhcCCCccCc--eeeecCC--CHHHHHHHHHHHhccCC
Confidence 3332 22346666667666665555556666655 7899998 55668888887664
Q ss_pred ---h---hHHHHhcCCC--Ch--hhHHHHHHhh
Q 012719 244 ---H---DLDAANARPQ--GG--QDILSLMGQM 266 (458)
Q Consensus 244 ---~---~l~~~~~~~~--g~--adl~~l~~~~ 266 (458)
+ +++.++..+. || ||+.+||...
T Consensus 697 ~pl~~dVdl~eia~~~~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 697 PPLSSDVDLDEIARNTKCEGFTGADLAALVREA 729 (802)
T ss_pred CCCCcccCHHHHhhcccccCCchhhHHHHHHHH
Confidence 1 8899998877 87 9999998764
No 16
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=1.5e-27 Score=249.89 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=112.1
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|+|+...+|+|||+||+++.. +||++| +++.+|+++|+|||+.+.|.+++.+++.++|
T Consensus 120 ~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT------------td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L 187 (830)
T PRK07003 120 FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT------------TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHL 187 (830)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE------------CChhhccchhhhheEEEecCCcCHHHHHHHH
Confidence 399999999999999999999999999877 788888 7889999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++++++.++++++..|++.+ +|++|.++++++.+..+. .+.|+.++|...++
T Consensus 188 ~~Il~~EgI~id~eAL~lIA~~A-~GsmRdALsLLdQAia~~----~~~It~~~V~~~LG 242 (830)
T PRK07003 188 ERILGEERIAFEPQALRLLARAA-QGSMRDALSLTDQAIAYS----ANEVTETAVSGMLG 242 (830)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCcCHHHHHHHhC
Confidence 99999999999999999999999 999999999999877553 34588888887765
No 17
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=2.2e-27 Score=245.88 Aligned_cols=123 Identities=26% Similarity=0.353 Sum_probs=112.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|+|+.+++|+|||+||+++.. +||++| +++.+|+++++|||+.+.|.+++.+++.+.|+
T Consensus 126 KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaT------------tep~kLlpTIrSRCq~f~f~~ls~eei~~~L~ 193 (700)
T PRK12323 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT------------TDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLD 193 (700)
T ss_pred eEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEe------------CChHhhhhHHHHHHHhcccCCCChHHHHHHHH
Confidence 99999999999999999999999999887 888999 88999999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.++.++++.+++++++.|++.+ +|++|.++++++.+..+ +.+.||.++|..++++.
T Consensus 194 ~Il~~Egi~~d~eAL~~IA~~A-~Gs~RdALsLLdQaia~----~~~~It~~~V~~~LG~~ 249 (700)
T PRK12323 194 AILGEEGIAHEVNALRLLAQAA-QGSMRDALSLTDQAIAY----SAGNVSEEAVRGMLGAI 249 (700)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----ccCCcCHHHHHHHhCCC
Confidence 9999999999999999999999 99999999999976653 23458888887766643
No 18
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=2.5e-27 Score=246.37 Aligned_cols=123 Identities=28% Similarity=0.359 Sum_probs=113.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|+|+.+++|+|+++||+|+.. ++|++| +++.+++++++|||..+.|.+++.+++.+.+
T Consensus 120 ~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat------------td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l 187 (509)
T PRK14958 120 FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT------------TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHC 187 (509)
T ss_pred cEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE------------CChHhchHHHHHHhhhhhcCCCCHHHHHHHH
Confidence 399999999999999999999999999888 788888 7889999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+.+++++++.+++++++.|++.+ +|++|.++++++.+..+ |.+.||.++|..+++.
T Consensus 188 ~~il~~egi~~~~~al~~ia~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 188 QHLLKEENVEFENAALDLLARAA-NGSVRDALSLLDQSIAY----GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCC
Confidence 99999999999999999999999 99999999999977544 4567999999998774
No 19
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=5.9e-27 Score=246.65 Aligned_cols=121 Identities=29% Similarity=0.407 Sum_probs=111.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|+|+.+++|+|||+||+|+.. +||++| +++..|+++++|||..+.|.+++.+++..+|.
T Consensus 121 KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~T------------t~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT------------TDPQKLPVTILSRCLQFHLKALDVEQIRQQLE 188 (647)
T ss_pred EEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEec------------CCccccchHHHhhheEeeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999988 788888 88899999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++.+++.++++++..|+..+ +|++|.++++++.+... +.+.||.++|...++
T Consensus 189 ~il~~e~i~~e~~aL~~Ia~~s-~Gs~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 189 HILQAEQIPFEPRALQLLARAA-DGSMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 9999999999999999999999 99999999999876543 345588888887766
No 20
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=8.2e-27 Score=242.22 Aligned_cols=121 Identities=29% Similarity=0.441 Sum_probs=112.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|+|+..++|+|+++||+++.. .+|++| +++..++++++|||.++.|.+++.+++.++|.
T Consensus 120 KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaT------------td~~kIp~TIlSRCq~feFkpLs~eEI~k~L~ 187 (702)
T PRK14960 120 KVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFAT------------TDPQKLPITVISRCLQFTLRPLAVDEITKHLG 187 (702)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEE------------CChHhhhHHHHHhhheeeccCCCHHHHHHHHH
Confidence 89999999999999999999999999887 788888 77889999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++++++.++++++..|++.+ +|++|.++++++.+..+ +.+.||.++|...++
T Consensus 188 ~Il~kEgI~id~eAL~~IA~~S-~GdLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 188 AILEKEQIAADQDAIWQIAESA-QGSLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 9999999999999999999999 99999999999866543 456799999998766
No 21
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=8.9e-27 Score=248.43 Aligned_cols=121 Identities=26% Similarity=0.373 Sum_probs=108.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|+|+.+++|+|||+||+|+.. .||++| +++..|+++|+|||.++.|.+++.+++.++|+
T Consensus 121 KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT------------Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~ 188 (944)
T PRK14949 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT------------TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLN 188 (944)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC------------CCchhchHHHHHhheEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999988 677777 78889999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.++..+++.+++++++.|+..+ +|++|.++++++.+... +.+.++.+.|...++
T Consensus 189 ~il~~EgI~~edeAL~lIA~~S-~Gd~R~ALnLLdQala~----~~~~It~~~V~~llG 242 (944)
T PRK14949 189 HILTQEQLPFEAEALTLLAKAA-NGSMRDALSLTDQAIAF----GGGQVMLTQVQTMLG 242 (944)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCcccHHHHHHHhC
Confidence 9999999999999999999999 99999999999876643 334577777665544
No 22
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1e-26 Score=238.33 Aligned_cols=123 Identities=30% Similarity=0.374 Sum_probs=113.9
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|+|++.||+|+.. ++|++| +++.+++++++|||+.+.|.+++.+++.+++
T Consensus 117 ~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat------------te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L 184 (491)
T PRK14964 117 FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT------------TEVKKIPVTIISRCQRFDLQKIPTDKLVEHL 184 (491)
T ss_pred ceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe------------CChHHHHHHHHHhheeeecccccHHHHHHHH
Confidence 499999999999999999999999999888 788888 7788999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+.+++++++.+++++++.|++.+ +|++|.++++|+.+..++ + +.||.++|+..++.
T Consensus 185 ~~ia~~Egi~i~~eAL~lIa~~s-~GslR~alslLdqli~y~---~-~~It~e~V~~llg~ 240 (491)
T PRK14964 185 VDIAKKENIEHDEESLKLIAENS-SGSMRNALFLLEQAAIYS---N-NKISEKSVRDLLGC 240 (491)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcc
Confidence 99999999999999999999999 999999999999887664 2 46999999988664
No 23
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=235.53 Aligned_cols=211 Identities=23% Similarity=0.323 Sum_probs=164.7
Q ss_pred CCCCccCCCC----CCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCc
Q 012719 26 GLGLEANGNA----VPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKV 94 (458)
Q Consensus 26 ~~~~~~~~~~----~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~ 94 (458)
++|++....| +.+|+|+.|.+++|..|++++++++. |..-|+++||+||||||||.||||+|.+.+ +
T Consensus 286 ~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~--V 363 (752)
T KOG0734|consen 286 TTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG--V 363 (752)
T ss_pred ccccccccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC--C
Confidence 4444444444 55699999999999999999988743 333359999999999999999999999999 9
Q ss_pred cEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccc
Q 012719 95 PFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQL 173 (458)
Q Consensus 95 p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 173 (458)
||++.+++++...++|..+ .++++|+.|+. ++||||||||+|++.++|...........++|+|..|
T Consensus 364 PFF~~sGSEFdEm~VGvGArRVRdLF~aAk~---~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEm--------- 431 (752)
T KOG0734|consen 364 PFFYASGSEFDEMFVGVGARRVRDLFAAAKA---RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEM--------- 431 (752)
T ss_pred CeEeccccchhhhhhcccHHHHHHHHHHHHh---cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHh---------
Confidence 9999999999999999998 69999999986 6699999999999999998775554457778888774
Q ss_pred cCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhh----cCHh---hH
Q 012719 174 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQD----VTLH---DL 246 (458)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~----~~l~---~l 246 (458)
|+|. ....|.|.+.||.+..++.++.+.+|||. .+.||.| ++..|.+|+.. +... |+
T Consensus 432 -------DGF~-----qNeGiIvigATNfpe~LD~AL~RPGRFD~--~v~Vp~P--Dv~GR~eIL~~yl~ki~~~~~VD~ 495 (752)
T KOG0734|consen 432 -------DGFK-----QNEGIIVIGATNFPEALDKALTRPGRFDR--HVTVPLP--DVRGRTEILKLYLSKIPLDEDVDP 495 (752)
T ss_pred -------cCcC-----cCCceEEEeccCChhhhhHHhcCCCccce--eEecCCC--CcccHHHHHHHHHhcCCcccCCCH
Confidence 3333 33344455555566666666667777765 4555555 77778888754 2232 88
Q ss_pred HHHhcCCCCh--hhHHHHHHhh
Q 012719 247 DAANARPQGG--QDILSLMGQM 266 (458)
Q Consensus 247 ~~~~~~~~g~--adl~~l~~~~ 266 (458)
..++..|.|+ ||+.++++..
T Consensus 496 ~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 496 KIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred hHhccCCCCCchHHHHHHHHHH
Confidence 8999999997 9999998664
No 24
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.95 E-value=6.4e-27 Score=226.82 Aligned_cols=217 Identities=23% Similarity=0.237 Sum_probs=167.3
Q ss_pred CCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 28 GLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 28 ~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
++.+..+| .+|++++||+++...-..+.+++..+..+ +++|||||||||||+|+.+|+..+ .+|..+++...
T Consensus 13 PLA~rmRP-~~lde~vGQ~HLlg~~~~lrr~v~~~~l~--SmIl~GPPG~GKTTlA~liA~~~~--~~f~~~sAv~~--- 84 (436)
T COG2256 13 PLAERLRP-KSLDEVVGQEHLLGEGKPLRRAVEAGHLH--SMILWGPPGTGKTTLARLIAGTTN--AAFEALSAVTS--- 84 (436)
T ss_pred ChHHHhCC-CCHHHhcChHhhhCCCchHHHHHhcCCCc--eeEEECCCCCCHHHHHHHHHHhhC--CceEEeccccc---
Confidence 55566666 46999999999998777788888998876 999999999999999999999998 45777766322
Q ss_pred hhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhc
Q 012719 108 EVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEK 187 (458)
Q Consensus 108 ~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
....++++++.|...
T Consensus 85 ---gvkdlr~i~e~a~~~-------------------------------------------------------------- 99 (436)
T COG2256 85 ---GVKDLREIIEEARKN-------------------------------------------------------------- 99 (436)
T ss_pred ---cHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 112233333333210
Q ss_pred cccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhhc
Q 012719 188 VAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMM 267 (458)
Q Consensus 188 ~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~~ 267 (458)
T Consensus 100 -------------------------------------------------------------------------------- 99 (436)
T COG2256 100 -------------------------------------------------------------------------------- 99 (436)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCC
Q 012719 268 KPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMN 347 (458)
Q Consensus 268 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~ 347 (458)
...|+. .||||||+|++++..|++||..||+...-++- +| .+ |
T Consensus 100 ----------------------~~~gr~----tiLflDEIHRfnK~QQD~lLp~vE~G~iilIG-AT-TE---------N 142 (436)
T COG2256 100 ----------------------RLLGRR----TILFLDEIHRFNKAQQDALLPHVENGTIILIG-AT-TE---------N 142 (436)
T ss_pred ----------------------HhcCCc----eEEEEehhhhcChhhhhhhhhhhcCCeEEEEe-cc-CC---------C
Confidence 001122 89999999999999999999999987532222 22 11 6
Q ss_pred CCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHH--hcCCc-----cCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 348 SPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQ--VEEIV-----LDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 348 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~--~~~~~-----i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
....+.++|+|||+++.|.+++.+++.+++++.+. ..++. +++++.++++..+ +||.|.++++|+.++..+.
T Consensus 143 PsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s-~GD~R~aLN~LE~~~~~~~ 221 (436)
T COG2256 143 PSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS-NGDARRALNLLELAALSAE 221 (436)
T ss_pred CCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc-CchHHHHHHHHHHHHHhcC
Confidence 67789999999999999999999999999998443 33444 8899999999999 9999999999999999875
Q ss_pred hhCCCCccHHHHHHHHH
Q 012719 421 MNGRDSICKADVEEVKA 437 (458)
Q Consensus 421 ~~~~~~it~~~v~~~~~ 437 (458)
... .++.+.+++.+.
T Consensus 222 ~~~--~~~~~~l~~~l~ 236 (436)
T COG2256 222 PDE--VLILELLEEILQ 236 (436)
T ss_pred CCc--ccCHHHHHHHHh
Confidence 443 344777777665
No 25
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5e-27 Score=241.46 Aligned_cols=209 Identities=22% Similarity=0.277 Sum_probs=165.4
Q ss_pred CCCCccccccchHHHHHHHHHHH-------HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVV-------DMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~-------~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
-|+..|+||.|.+++|..+..-+ +++..|..++.++|||||||||||.+|+|+|.++. +.|+.+.++++..
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--L~FlSVKGPELLN 743 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELLN 743 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--eeEEeecCHHHHH
Confidence 47889999999999999887666 35677777778999999999999999999999998 7799999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCc--cCCchhhHHHHHHhhccccccccccCChhHHHHH
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESI--TGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 183 (458)
.|+|+.| +++++|.+|+..+ |||||+||+|+++|+|+.++ .+.++|+++|+|.+| |++
T Consensus 744 MYVGqSE~NVR~VFerAR~A~---PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL----------------Dgl 804 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAA---PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL----------------DGL 804 (953)
T ss_pred HHhcchHHHHHHHHHHhhccC---CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh----------------hcc
Confidence 9999998 7999999999755 99999999999999998773 344799999999885 333
Q ss_pred hhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHh----hcCHh---hHHHHhcCCCC-
Q 012719 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQ----DVTLH---DLDAANARPQG- 255 (458)
Q Consensus 184 ~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~----~~~l~---~l~~~~~~~~g- 255 (458)
.+. ..+-|+|++.||++..++.+.-+.+|||+ ..|+..++.. ..+..++. .+.++ ++..++++.+-
T Consensus 805 s~~---~s~~VFViGATNRPDLLDpALLRPGRFDK--LvyvG~~~d~-esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 805 SDS---SSQDVFVIGATNRPDLLDPALLRPGRFDK--LVYVGPNEDA-ESKLRVLEALTRKFKLDEDVDLVEIAKKCPPN 878 (953)
T ss_pred cCC---CCCceEEEecCCCccccChhhcCCCccce--eEEecCCccH-HHHHHHHHHHHHHccCCCCcCHHHHHhhCCcC
Confidence 321 33567777788888888888888888877 6777766543 33434444 34343 66666776544
Q ss_pred --hhhHHHHHHhhccc
Q 012719 256 --GQDILSLMGQMMKP 269 (458)
Q Consensus 256 --~adl~~l~~~~~~~ 269 (458)
+||+.++|..++-.
T Consensus 879 ~TGADlYsLCSdA~l~ 894 (953)
T KOG0736|consen 879 MTGADLYSLCSDAMLA 894 (953)
T ss_pred CchhHHHHHHHHHHHH
Confidence 49999999776533
No 26
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=5.1e-26 Score=239.19 Aligned_cols=123 Identities=25% Similarity=0.369 Sum_probs=113.3
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|+|+.+++|+|+++||+++.. ++|++| +++.+++++++|||..+.|.+++.+++.+.|
T Consensus 125 ~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T------------td~~kil~TIlSRc~~~~f~~Ls~eei~~~L 192 (618)
T PRK14951 125 FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT------------TDPQKVPVTVLSRCLQFNLRPMAPETVLEHL 192 (618)
T ss_pred ceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE------------CCchhhhHHHHHhceeeecCCCCHHHHHHHH
Confidence 399999999999999999999999999888 788888 7889999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+.+++++|+.++++++.+|++.+ +|++|.++++++.+..+ +...||.++|+.+++.
T Consensus 193 ~~i~~~egi~ie~~AL~~La~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~Lg~ 248 (618)
T PRK14951 193 TQVLAAENVPAEPQALRLLARAA-RGSMRDALSLTDQAIAF----GSGQLQEAAVRQMLGS 248 (618)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcC
Confidence 99999999999999999999999 99999999999876654 3456999999987763
No 27
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=4.4e-26 Score=238.89 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=113.2
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|+|+.+++|+||+.||+++.. ++|++| +++.+++++++|||+.+.|.+++.+++.++|
T Consensus 119 ~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t------------te~~kll~TI~SRc~~~~F~~l~~~~i~~~L 186 (584)
T PRK14952 119 YRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT------------TEPEKVLPTIRSRTHHYPFRLLPPRTMRALI 186 (584)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe------------CChHhhHHHHHHhceEEEeeCCCHHHHHHHH
Confidence 399999999999999999999999999988 888888 7788999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
..+++++++.++++++.+|+..+ +|++|.++++|+.+..++ +.+.||.++|...++.
T Consensus 187 ~~i~~~egi~i~~~al~~Ia~~s-~GdlR~aln~Ldql~~~~---~~~~It~~~v~~llg~ 243 (584)
T PRK14952 187 ARICEQEGVVVDDAVYPLVIRAG-GGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLLGA 243 (584)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHHCC
Confidence 99999999999999999999999 999999999999775543 3567999988887653
No 28
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=9.8e-26 Score=232.92 Aligned_cols=129 Identities=26% Similarity=0.333 Sum_probs=115.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+..++|+|++.||+++.. ++|++| +.+..++++++|||+.+.|.+++.+++.+++
T Consensus 129 ~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT------------te~~kI~~tI~SRc~~~ef~~ls~~el~~~L 196 (507)
T PRK06645 129 HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT------------TEVQKIPATIISRCQRYDLRRLSFEEIFKLL 196 (507)
T ss_pred cEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe------------CChHHhhHHHHhcceEEEccCCCHHHHHHHH
Confidence 399999999999999999999999999888 777888 6778899999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
+.+++++++.+++++++.|+..+ +|++|.++++|+.+..++... ...||.++|+..++....
T Consensus 197 ~~i~~~egi~ie~eAL~~Ia~~s-~GslR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~~~~ 258 (507)
T PRK06645 197 EYITKQENLKTDIEALRIIAYKS-EGSARDAVSILDQAASMSAKS-DNIISPQVINQMLGLVDS 258 (507)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCCCCH
Confidence 99999999999999999999999 999999999999887765311 236999999998775544
No 29
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.3e-25 Score=233.36 Aligned_cols=122 Identities=32% Similarity=0.417 Sum_probs=112.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|+|+.+++|+|++.||+++.. ++|++| +++..++++++|||..++|.+++.+++.++|.
T Consensus 121 kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T------------td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~ 188 (546)
T PRK14957 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT------------TDYHKIPVTILSRCIQLHLKHISQADIKDQLK 188 (546)
T ss_pred EEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE------------CChhhhhhhHHHheeeEEeCCCCHHHHHHHHH
Confidence 99999999999999999999999999887 788888 77899999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
.+++++++.++++++..|+..+ +||+|.++++|+.+..+. + +.|+.++|+.+++.
T Consensus 189 ~il~~egi~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~---~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 189 IILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQAISFC---G-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHcc
Confidence 9999999999999999999999 999999999999877653 3 56999999987664
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=9.8e-26 Score=226.92 Aligned_cols=122 Identities=30% Similarity=0.359 Sum_probs=111.7
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|+|++.+|+++.. .+|++| +++..++++++|||..+.|.+++.+++.+++
T Consensus 120 ~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t------------~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L 187 (363)
T PRK14961 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILAT------------TDVEKIPKTILSRCLQFKLKIISEEKIFNFL 187 (363)
T ss_pred ceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEc------------CChHhhhHHHHhhceEEeCCCCCHHHHHHHH
Confidence 389999999999999999999999999887 677777 6677899999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++.+++.+++++++.|+..+ +|++|.++++++.+..+ +.+.||.++|..+++
T Consensus 188 ~~~~~~~g~~i~~~al~~ia~~s-~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 188 KYILIKESIDTDEYALKLIAYHA-HGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 99999999999999999999999 99999999999977654 456799999998776
No 31
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-26 Score=210.54 Aligned_cols=213 Identities=25% Similarity=0.348 Sum_probs=170.3
Q ss_pred hhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHH--------HHhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 19 AAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDM--------IRQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~--------~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
-++|.|..++.++. |..+..|+.|.+-.|..+++.+++ -+-|..||+++|+|||||||||+||+++|+..
T Consensus 136 eadssi~ml~~~ek--pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 136 EADSSISMLGPDEK--PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccccccccCCCCC--CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 36788888877765 667899999999988888877742 25588899999999999999999999999988
Q ss_pred CCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccc
Q 012719 91 GSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKG 169 (458)
Q Consensus 91 ~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 169 (458)
. ..|+.+.+++++.+|.|+.. .++++|+.|++ ++|++|||||+|+++.+|.+.. .+.+|.+..+|+.|.++
T Consensus 214 ~--a~firvvgsefvqkylgegprmvrdvfrlake---napsiifideidaiatkrfdaq-tgadrevqril~ellnq-- 285 (408)
T KOG0727|consen 214 T--AAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQ-- 285 (408)
T ss_pred c--hheeeeccHHHHHHHhccCcHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHh--
Confidence 7 55999999999999999998 59999999997 5599999999999999998764 34578888888887555
Q ss_pred cccccCChhHHHHHhhhccccCCeEEEeccC------cccccCCccccccccccccccccccCCCcchHHHHHHHhhcC-
Q 012719 170 TKQLKLDPTIYDALIKEKVAVGDVIYIEANS------GAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT- 242 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~------~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~- 242 (458)
+|+|. ...++-+|.+|+ +++.+|||.++ .+.+|.|+. ++++-+++.++
T Consensus 286 ----------mdgfd----q~~nvkvimatnradtldpallrpgrldr---------kiefplpdr--rqkrlvf~tits 340 (408)
T KOG0727|consen 286 ----------MDGFD----QTTNVKVIMATNRADTLDPALLRPGRLDR---------KIEFPLPDR--RQKRLVFSTITS 340 (408)
T ss_pred ----------ccCcC----cccceEEEEecCcccccCHhhcCCccccc---------cccCCCCch--hhhhhhHHhhhh
Confidence 55555 345778888887 67788888886 677777754 44555565544
Q ss_pred ---Hh---hHHHHhcCCCCh--hhHHHHHHhh
Q 012719 243 ---LH---DLDAANARPQGG--QDILSLMGQM 266 (458)
Q Consensus 243 ---l~---~l~~~~~~~~g~--adl~~l~~~~ 266 (458)
+. |++.+..+++.. +|+.++|...
T Consensus 341 km~ls~~vdle~~v~rpdkis~adi~aicqea 372 (408)
T KOG0727|consen 341 KMNLSDEVDLEDLVARPDKISGADINAICQEA 372 (408)
T ss_pred cccCCcccCHHHHhcCccccchhhHHHHHHHH
Confidence 22 888888888774 9999998764
No 32
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=4.3e-25 Score=231.51 Aligned_cols=123 Identities=29% Similarity=0.419 Sum_probs=113.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|.|+..++|.|++.||+++.. .+|++| +++.+++++++|||..+.|.+++.+++.++|.
T Consensus 121 KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaT------------td~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~ 188 (709)
T PRK08691 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT------------TDPHKVPVTVLSRCLQFVLRNMTAQQVADHLA 188 (709)
T ss_pred EEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEe------------CCccccchHHHHHHhhhhcCCCCHHHHHHHHH
Confidence 89999999999999999999999999877 788888 78889999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.+++++++.++++++..|++.+ +||+|.++++|+.+..+ +.+.|+.++|...++..
T Consensus 189 ~Il~kEgi~id~eAL~~Ia~~A-~GslRdAlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 189 HVLDSEKIAYEPPALQLLGRAA-AGSMRDALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHcCCCcCHHHHHHHHHHh-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 9999999999999999999999 99999999999977654 35579999999987754
No 33
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=1.9e-25 Score=242.37 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=110.7
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|+|+.+.+|+|||+||+++.+ +|||+| +++.+|+++|+|||+++.|.+++.+++.++|
T Consensus 121 ~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t------------t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L 188 (824)
T PRK07764 121 YKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT------------TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYL 188 (824)
T ss_pred ceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe------------CChhhhhHHHHhheeEEEeeCCCHHHHHHHH
Confidence 499999999999999999999999999988 788888 6778899999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++++++.++++++.+|+..+ .||+|.++++|+.+..++ +...||.++|...++
T Consensus 189 ~~il~~EGv~id~eal~lLa~~s-gGdlR~Al~eLEKLia~~---~~~~IT~e~V~allg 244 (824)
T PRK07764 189 ERICAQEGVPVEPGVLPLVIRAG-GGSVRDSLSVLDQLLAGA---GPEGVTYERAVALLG 244 (824)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc---CCCCCCHHHHHHHhc
Confidence 99999999999999999999999 999999999999766443 345688887776544
No 34
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=3.2e-25 Score=231.96 Aligned_cols=122 Identities=29% Similarity=0.400 Sum_probs=112.9
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|+|++.+|+++.. ++|++| +++..++++++|||+.+.|.+++.+++.+.+
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t------------~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L 187 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT------------TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHL 187 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe------------CChhhCchhHHHHHHHHhcCCCCHHHHHHHH
Confidence 399999999999999999999999999887 788888 7888999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++++++.++++++..|+..+ +|++|.++++++.+..+ +.+.|+.++|+..++
T Consensus 188 ~~il~~egi~~~~~al~~la~~s-~Gslr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 188 QHILEQENIPFDATALQLLARAA-AGSMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 99999999999999999999999 99999999999977654 456799999988776
No 35
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=4.7e-25 Score=232.30 Aligned_cols=123 Identities=28% Similarity=0.382 Sum_probs=112.5
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|+|++++|+|+.. ++|++| +.+..++++++|||+.+.|.+++.+++.+++
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlat------------t~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L 187 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILAT------------TEPHKIPATILSRCQRFDFKRISVEDIVERL 187 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEe------------CChhhCcHHHHhHheEEecCCCCHHHHHHHH
Confidence 499999999999999999999999999888 788888 7789999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+.+++++|+.++++++..|+..+ +|++|.++++|+.+..++ .+.||.++|..+++.
T Consensus 188 ~~i~~~egi~i~~~al~~ia~~s-~G~~R~al~~Ldq~~~~~----~~~It~~~V~~vlg~ 243 (559)
T PRK05563 188 KYILDKEGIEYEDEALRLIARAA-EGGMRDALSILDQAISFG----DGKVTYEDALEVTGS 243 (559)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHhCC
Confidence 99999999999999999999999 999999999999776553 456999998887653
No 36
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=2.1e-25 Score=230.60 Aligned_cols=122 Identities=29% Similarity=0.391 Sum_probs=111.7
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++|||+|+|+.+++|+|++.||+|+.. ++|+++ +++..|+++++|||..++|.+++.+++.+.+
T Consensus 118 ~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t------------td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L 185 (535)
T PRK08451 118 FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT------------TDPLKLPATILSRTQHFRFKQIPQNSIISHL 185 (535)
T ss_pred eEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE------------CChhhCchHHHhhceeEEcCCCCHHHHHHHH
Confidence 399999999999999999999999999887 788888 6789999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++++|+.++++++..|+..+ +|++|.++++|+.+..++ .+.||.++|...++
T Consensus 186 ~~Il~~EGi~i~~~Al~~Ia~~s-~GdlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 186 KTILEKEGVSYEPEALEILARSG-NGSLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 99999999999999999999999 999999999999887665 34588888887655
No 37
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=5.9e-25 Score=232.53 Aligned_cols=122 Identities=29% Similarity=0.425 Sum_probs=111.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|+|+.+++|+|+++||+|+.. ++|++| +++.+|+++++|||+.+.|.+++.+++...+
T Consensus 120 ~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t------------~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L 187 (576)
T PRK14965 120 YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFAT------------TEPHKVPITILSRCQRFDFRRIPLQKIVDRL 187 (576)
T ss_pred ceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEe------------CChhhhhHHHHHhhhhhhcCCCCHHHHHHHH
Confidence 399999999999999999999999999887 788888 7889999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++++++.++++++..|+..+ +|++|.++++|+.+..+. + +.||.++|...++
T Consensus 188 ~~i~~~egi~i~~~al~~la~~a-~G~lr~al~~Ldqliay~---g-~~It~edV~~llG 242 (576)
T PRK14965 188 RYIADQEGISISDAALALVARKG-DGSMRDSLSTLDQVLAFC---G-DAVGDDDVAELLG 242 (576)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHhC
Confidence 99999999999999999999999 999999999999776654 2 3599999887644
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.5e-24 Score=237.03 Aligned_cols=361 Identities=23% Similarity=0.318 Sum_probs=239.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.+..+|++|+|++++++.+..++.+. ..+..+++++||+||||||||++|+++|++++ .+++.++++++.
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~i~i~~~~i~ 249 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYFISINGPEIM 249 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeEEEEecHHHh
Confidence 36788999999999999998877543 23456678999999999999999999999998 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
+.+.|..+ .++..|+.+.. ..|+++|+||+|.+++++.... +...+.+...++.+ ++.+.
T Consensus 250 ~~~~g~~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~---------------ld~l~ 310 (733)
T TIGR01243 250 SKYYGESEERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTL---------------MDGLK 310 (733)
T ss_pred cccccHHHHHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHH---------------hhccc
Confidence 99999887 69999998875 4599999999999998875432 22223222222222 22222
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----H---hhHHHHhcCCCCh-
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----L---HDLDAANARPQGG- 256 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l---~~l~~~~~~~~g~- 256 (458)
..+.+++| ++++.+..++...++.+||+.. +.++.| +...|.++++... + .+++.++..++||
T Consensus 311 ----~~~~vivI-~atn~~~~ld~al~r~gRfd~~--i~i~~P--~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 311 ----GRGRVIVI-GATNRPDALDPALRRPGRFDRE--IVIRVP--DKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred ----cCCCEEEE-eecCChhhcCHHHhCchhccEE--EEeCCc--CHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCC
Confidence 23445555 5555666666666666778764 445555 4455777766422 1 2678888889997
Q ss_pred -hhHHHHHHhhccch-------------h------------------------------HHH--------------hHHH
Q 012719 257 -QDILSLMGQMMKPR-------------K------------------------------TEI--------------TDKL 278 (458)
Q Consensus 257 -adl~~l~~~~~~~~-------------~------------------------------~~i--------------~~~~ 278 (458)
+|+..++....... . .++ .+.+
T Consensus 382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~ 461 (733)
T TIGR01243 382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEV 461 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHH
Confidence 77766543211000 0 000 0111
Q ss_pred HHHHHH-------------------------------------------------------HHHHHHhhcc---------
Q 012719 279 RQEINK-------------------------------------------------------VVNRFIDEGA--------- 294 (458)
Q Consensus 279 ~~~i~~-------------------------------------------------------~~~~~~~~~~--------- 294 (458)
++.+.+ .+.+|+.+..
T Consensus 462 k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~ 541 (733)
T TIGR01243 462 KQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRK 541 (733)
T ss_pred HHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHH
Confidence 111111 1112221111
Q ss_pred -ccccceEEEEcccchhc------------HHHHHHHHHHhhc--cCCC-eEEEecCCccccccCCCCCCCCCCChhHhh
Q 012719 295 -AELVPGVLFIDEVHMLD------------MECFSYLNRALES--SLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLD 358 (458)
Q Consensus 295 -~~~~~~Vl~IDE~~~l~------------~~~~~~Ll~~lE~--~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s 358 (458)
....++|+||||++.+. ....+.|+..|+. .... ++|.+| +.|..|++++++
T Consensus 542 A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT------------n~~~~ld~allR 609 (733)
T TIGR01243 542 ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT------------NRPDILDPALLR 609 (733)
T ss_pred HHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC------------CChhhCCHhhcC
Confidence 12345799999999873 3467888888874 3334 566666 678899999885
Q ss_pred --hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhC------------
Q 012719 359 --RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNG------------ 423 (458)
Q Consensus 359 --R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~------------ 423 (458)
||..+ .+++++.++..+|++...++..+. ++..++.|++.+...+......+++.|...|....
T Consensus 610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~ 688 (733)
T TIGR01243 610 PGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVG 688 (733)
T ss_pred CCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcc
Confidence 99655 999999999999998766544432 22347888888844566777777777776654421
Q ss_pred ------CCCccHHHHHHHHH
Q 012719 424 ------RDSICKADVEEVKA 437 (458)
Q Consensus 424 ------~~~it~~~v~~~~~ 437 (458)
...|+.+|+..++.
T Consensus 689 ~~~~~~~~~i~~~~f~~al~ 708 (733)
T TIGR01243 689 EEEFLKDLKVEMRHFLEALK 708 (733)
T ss_pred cccccccCcccHHHHHHHHH
Confidence 12588999998887
No 39
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=4.3e-25 Score=233.65 Aligned_cols=123 Identities=29% Similarity=0.427 Sum_probs=112.0
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++++|++.||+|+.+ ++|++| +.+..|+++++|||+.+.|.+++.+++.++|
T Consensus 119 ~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT------------te~~KLl~TI~SRcq~ieF~~L~~eeI~~~L 186 (725)
T PRK07133 119 YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT------------TEVHKIPLTILSRVQRFNFRRISEDEIVSRL 186 (725)
T ss_pred CEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc------------CChhhhhHHHHhhceeEEccCCCHHHHHHHH
Confidence 399999999999999999999999999888 788888 7788999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
..+++++++.++++++..++..+ +|++|.|+.+++.+..++ .+.||.++|..+++.
T Consensus 187 ~~il~kegI~id~eAl~~LA~lS-~GslR~AlslLekl~~y~----~~~It~e~V~ellg~ 242 (725)
T PRK07133 187 EFILEKENISYEKNALKLIAKLS-SGSLRDALSIAEQVSIFG----NNKITLKNVEELFGL 242 (725)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHcC
Confidence 99999999999999999999999 999999999999776543 345999999886653
No 40
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-26 Score=215.04 Aligned_cols=199 Identities=21% Similarity=0.317 Sum_probs=161.8
Q ss_pred CCCCccccccchHHHHHHHHHHH-------HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVV-------DMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~-------~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.|+..|+|+.|++.+|++|++.+ .++..+..|-+++||||||||||+.||+++|.+.+ --|+.++.+++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFSvSSSDLvS 204 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVS 204 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEEeehHHHHH
Confidence 47888999999999999998766 34455666778999999999999999999999999 4599999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
+|+|+.+ .+..+|..|++ ++|+||||||+|++|+.|.++.++...|+-..+|.+|... .
T Consensus 205 KWmGESEkLVknLFemARe---~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV---G-------------- 264 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARE---NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV---G-------------- 264 (439)
T ss_pred HHhccHHHHHHHHHHHHHh---cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc---c--------------
Confidence 9999999 58999999997 5599999999999999999988888778777788775221 1
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHh--------hcCHhhHHHHhcCCCCh-
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQ--------DVTLHDLDAANARPQGG- 256 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~--------~~~l~~l~~~~~~~~g~- 256 (458)
...+.+.|.+.||.++.++.+. ++||+. .+|+|.|+. ..|...+. .+|-.|+..++..|+||
T Consensus 265 ---~d~~gvLVLgATNiPw~LDsAI--RRRFek--RIYIPLPe~--~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 265 ---NDNDGVLVLGATNIPWVLDSAI--RRRFEK--RIYIPLPEA--HARARMFKLHLGDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ---cCCCceEEEecCCCchhHHHHH--HHHhhc--ceeccCCcH--HHhhhhheeccCCCccccchhhHHHHHhhcCCCC
Confidence 2456777888888998887666 467755 788888854 44554432 25556999999999998
Q ss_pred -hhHHHHH
Q 012719 257 -QDILSLM 263 (458)
Q Consensus 257 -adl~~l~ 263 (458)
+|+..++
T Consensus 336 GsDisivV 343 (439)
T KOG0739|consen 336 GSDISIVV 343 (439)
T ss_pred cCceEEEe
Confidence 7775544
No 41
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=6.5e-25 Score=229.25 Aligned_cols=122 Identities=25% Similarity=0.299 Sum_probs=110.2
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|.|+++||+++.. ++|++| +.+..++++|+|||+.+.|.+++.+++.++|
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT------------t~~~kll~TI~SRcq~i~F~pLs~~eL~~~L 187 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT------------TEPHKFPVTIVSRCQHFTFTRLSEAGLEAHL 187 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec------------CChhhhhHHHHhhhhccccCCCCHHHHHHHH
Confidence 399999999999999999999999998777 788888 7788999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++.+++.+++++++.|++.+ +|++|.++++|+.+. + .+.+.||.++|+.+++
T Consensus 188 ~~il~~egi~id~eal~lIA~~s-~GdlR~Al~lLeqll--~--~g~~~It~d~V~~~lg 242 (624)
T PRK14959 188 TKVLGREGVDYDPAAVRLIARRA-AGSVRDSMSLLGQVL--A--LGESRLTIDGARGVLG 242 (624)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH--H--hcCCCcCHHHHHHHhC
Confidence 99999999999999999999999 999999999999653 2 3555799999887664
No 42
>PLN03025 replication factor C subunit; Provisional
Probab=99.93 E-value=8.5e-25 Score=216.70 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=106.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||+|.|+..++++|++.||.++.. .+|+++ +.+..+.++++|||..++|.+++++++.++|+
T Consensus 101 kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~------------n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~ 168 (319)
T PLN03025 101 KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALAC------------NTSSKIIEPIQSRCAIVRFSRLSDQEILGRLM 168 (319)
T ss_pred EEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEe------------CCccccchhHHHhhhcccCCCCCHHHHHHHHH
Confidence 89999999999999999999999998765 677788 55678899999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++++++.++++++++|++.+ +||+|.+++.|+.+. . +...||.++|....+
T Consensus 169 ~i~~~egi~i~~~~l~~i~~~~-~gDlR~aln~Lq~~~--~---~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 169 KVVEAEKVPYVPEGLEAIIFTA-DGDMRQALNNLQATH--S---GFGFVNQENVFKVCD 221 (319)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH--h---cCCCCCHHHHHHHcC
Confidence 9999999999999999999999 999999999999433 1 345688888876533
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=7.1e-25 Score=225.76 Aligned_cols=126 Identities=29% Similarity=0.348 Sum_probs=112.6
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+.++.|++.+|+++.. ++|++| +++..++++++|||..+.|.+++.+++..++
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat------------tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L 185 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT------------TNLEKVPPTIISRCQVIEFRNISDELIIKRL 185 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe------------CChHhhhHHHhcCcEEEEECCccHHHHHHHH
Confidence 389999999999999999999999998877 667777 5677899999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
+.+++.+++.+++++++.|++.+ +||+|.+++.|+.+..++ + +.||.++|+.+++...+
T Consensus 186 ~~i~~~egi~i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~~~~ 244 (472)
T PRK14962 186 QEVAEAEGIEIDREALSFIAKRA-SGGLRDALTMLEQVWKFS---E-GKITLETVHEALGLIPI 244 (472)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcCCCH
Confidence 99999999999999999999999 999999999999876553 2 34999999998875443
No 44
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=8.3e-25 Score=227.38 Aligned_cols=122 Identities=26% Similarity=0.394 Sum_probs=111.2
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++|||+|.|+.+++|+|++.||+|+.. ++|++| +.+..++++++|||+.+.|.+++.+++..+|
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T------------t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L 187 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT------------TEFQKIPLTIISRCQRYNFKKLNNSELQELL 187 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC------------CChHhhhHHHHhhhhhcccCCCCHHHHHHHH
Confidence 399999999999999999999999999877 788888 6788999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..++.++++.++++++..+++.+ +|++|.|+++|+.+..++ +. .||.++|...++
T Consensus 188 ~~il~kegi~Is~eal~~La~lS-~GdlR~AlnlLekL~~y~---~~-~It~e~V~ellg 242 (605)
T PRK05896 188 KSIAKKEKIKIEDNAIDKIADLA-DGSLRDGLSILDQLSTFK---NS-EIDIEDINKTFG 242 (605)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhhc---CC-CCCHHHHHHHhc
Confidence 99999999999999999999999 999999999999866554 33 399999888655
No 45
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.5e-26 Score=217.77 Aligned_cols=207 Identities=19% Similarity=0.284 Sum_probs=164.3
Q ss_pred CCCCCccccccchHHHHHHHHHHH-------HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 33 GNAVPLAAGFVGQVEAREAAGLVV-------DMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 33 ~~~~~~l~~liG~~~~~~~l~~l~-------~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.+|+-.|+||.|+.++|+.|++.+ .+++....|=+++|++||||||||+||+|+|.+++ .-|+.++.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG--TTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--CeEEEechhhhh
Confidence 456678999999999999998776 46677777779999999999999999999999999 669999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
++|-|+.| .++-+|..|+- ++|++|||||+|+||..|+...-....|.+...|+.. +|++.
T Consensus 283 SKwRGeSEKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQ---------------mDG~~ 344 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQ---------------MDGVQ 344 (491)
T ss_pred hhhccchHHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHH---------------hhccc
Confidence 99999999 59999999985 6699999999999999999876555566666544432 44443
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhc----CHh---hHHHHhcCCCCh-
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDV----TLH---DLDAANARPQGG- 256 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~----~l~---~l~~~~~~~~g~- 256 (458)
.. .....+|+|.+.||-++.++.+. .+||.. .+|+|.|+. ..|..++... .+. +++.++..++||
T Consensus 345 ~t-~e~~k~VmVLAATN~PWdiDEAl--rRRlEK--RIyIPLP~~--~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGyS 417 (491)
T KOG0738|consen 345 GT-LENSKVVMVLAATNFPWDIDEAL--RRRLEK--RIYIPLPDA--EARSALIKILLRSVELDDPVNLEDLAERSEGYS 417 (491)
T ss_pred cc-cccceeEEEEeccCCCcchHHHH--HHHHhh--heeeeCCCH--HHHHHHHHHhhccccCCCCccHHHHHHHhcCCC
Confidence 11 12346799999999999888665 466644 788888854 4466655432 221 778889999998
Q ss_pred -hhHHHHHHhh
Q 012719 257 -QDILSLMGQM 266 (458)
Q Consensus 257 -adl~~l~~~~ 266 (458)
+||..+|..+
T Consensus 418 GaDI~nvCreA 428 (491)
T KOG0738|consen 418 GADITNVCREA 428 (491)
T ss_pred hHHHHHHHHHH
Confidence 9999998664
No 46
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=1.3e-24 Score=228.99 Aligned_cols=124 Identities=27% Similarity=0.351 Sum_probs=113.1
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|+|+++||+++.. ++||++ +.+.+++++++|||+.+.|.+++.+++.++|
T Consensus 133 ~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t------------te~~kll~tI~SRcq~~~f~~l~~~el~~~L 200 (598)
T PRK09111 133 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT------------TEIRKVPVTVLSRCQRFDLRRIEADVLAAHL 200 (598)
T ss_pred cEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe------------CChhhhhHHHHhheeEEEecCCCHHHHHHHH
Confidence 399999999999999999999999999888 788888 6777899999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
..+++++++.++++++++|+..+ +|++|.++++|+.+..+ +.+.||.++|+..++..
T Consensus 201 ~~i~~kegi~i~~eAl~lIa~~a-~Gdlr~al~~Ldkli~~----g~g~It~e~V~~llg~~ 257 (598)
T PRK09111 201 SRIAAKEGVEVEDEALALIARAA-EGSVRDGLSLLDQAIAH----GAGEVTAEAVRDMLGLA 257 (598)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhh----cCCCcCHHHHHHHhCCC
Confidence 99999999999999999999999 99999999999976554 34569999999987743
No 47
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=4.8e-24 Score=220.60 Aligned_cols=122 Identities=29% Similarity=0.330 Sum_probs=111.6
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++|||+|.|+.+++|+|++++|+++.. ++|++| +++..++++++|||+.+.|.+++.+++..++
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t------------t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L 187 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT------------TEYDKIPPTILSRCQRFIFSKPTKEQIKEYL 187 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE------------CCHHHHHHHHHHhceEEEcCCCCHHHHHHHH
Confidence 499999999999999999999999999876 788888 6678899999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++.+|+.++++++..|+..+ +|++|.++++|+.+..+ +.+.||.++|+.+++
T Consensus 188 ~~i~k~egi~id~~al~~La~~s-~G~lr~al~~Ldkl~~~----~~~~It~~~V~~~lg 242 (486)
T PRK14953 188 KRICNEEKIEYEEKALDLLAQAS-EGGMRDAASLLDQASTY----GEGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHhC
Confidence 99999999999999999999999 99999999999987654 345699999998765
No 48
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=6.7e-24 Score=215.97 Aligned_cols=124 Identities=31% Similarity=0.374 Sum_probs=111.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|.|+.+.++.|++.+|+++.. ++|+++ +.+..+.++++|||..+.|.+++++++.+.++
T Consensus 129 kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t------------~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~ 196 (397)
T PRK14955 129 RVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT------------TELHKIPATIASRCQRFNFKRIPLEEIQQQLQ 196 (397)
T ss_pred EEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe------------CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 89999999999999999999999999877 777777 56689999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhh-hCCCCccHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKM-NGRDSICKADVEEVK 436 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~-~~~~~it~~~v~~~~ 436 (458)
.+++.+++.+++++++.|++.+ +|++|.+++.|+.+..++.. .+...||.++|..++
T Consensus 197 ~~~~~~g~~i~~~al~~l~~~s-~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 197 GICEAEGISVDADALQLIGRKA-QGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 9999999999999999999999 99999999999988777643 224579999998765
No 49
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.3e-23 Score=221.70 Aligned_cols=126 Identities=27% Similarity=0.325 Sum_probs=112.6
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|+|++.||+|+.. ++|+++ +.+..|.++++|||+.+.|.+++.+++.+.+
T Consensus 128 ~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t------------~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L 195 (620)
T PRK14954 128 YRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT------------TELHKIPATIASRCQRFNFKRIPLDEIQSQL 195 (620)
T ss_pred CEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe------------CChhhhhHHHHhhceEEecCCCCHHHHHHHH
Confidence 399999999999999999999999999887 778888 6678999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhh-hCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKM-NGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~-~~~~~it~~~v~~~~~ 437 (458)
+.+++++++.+++++++.|+..+ +|++|.+++.|+.+..++.- .+...||.++|...++
T Consensus 196 ~~i~~~egi~I~~eal~~La~~s-~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 196 QMICRAEGIQIDADALQLIARKA-QGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 99999999999999999999999 99999999999977766521 1245699998987663
No 50
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=8e-24 Score=219.65 Aligned_cols=122 Identities=27% Similarity=0.357 Sum_probs=110.7
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
+.|+||||++.++.+.++.|++.||+++.. ++|+++ +.+..++++++|||..++|.+++.+++.+++
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t------------~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L 184 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT------------TEPEKMPPTILSRTQHFRFRRLTEEEIAGKL 184 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc------------CChhhCChHHhcceEEEEecCCCHHHHHHHH
Confidence 389999999999999999999999999776 777788 6678999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+.+++++|+.++++++.+|++.+ +|++|.+++.|+.+... ...||.++|..+++.
T Consensus 185 ~~i~~~egi~i~~~Al~~ia~~s-~GdlR~aln~Lekl~~~-----~~~It~~~V~~~l~~ 239 (504)
T PRK14963 185 RRLLEAEGREAEPEALQLVARLA-DGAMRDAESLLERLLAL-----GTPVTRKQVEEALGL 239 (504)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHCC
Confidence 99999999999999999999999 99999999999976542 236999999988664
No 51
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=5.6e-24 Score=223.33 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=111.5
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+++|+|++.+|+|+.. ++|+++ +++..++++++|||+.+.|.+++.+++.++|
T Consensus 120 ~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~t------------te~~kL~~tI~SRc~~~~f~~l~~~el~~~L 187 (563)
T PRK06647 120 YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT------------TEVHKLPATIKSRCQHFNFRLLSLEKIYNML 187 (563)
T ss_pred CEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEec------------CChHHhHHHHHHhceEEEecCCCHHHHHHHH
Confidence 399999999999999999999999999888 777888 6778999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++.+++.++++++.+|+..+ .|++|.++++|+.+..++ + +.||.++|+.+++
T Consensus 188 ~~i~~~egi~id~eAl~lLa~~s-~GdlR~alslLdklis~~---~-~~It~e~V~~llg 242 (563)
T PRK06647 188 KKVCLEDQIKYEDEALKWIAYKS-TGSVRDAYTLFDQVVSFS---D-SDITLEQIRSKMG 242 (563)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhC
Confidence 99999999999999999999999 999999999999776553 2 4599999998765
No 52
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-24 Score=219.32 Aligned_cols=200 Identities=24% Similarity=0.318 Sum_probs=163.8
Q ss_pred CccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchh
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSE 108 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~ 108 (458)
-.|+|+.|..++++.+...+.+. ..+..-+.++|||||||||||.||-++|...+ +.|+.+.++++.++|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--LRFISVKGPELLSKY 741 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--eeEEEecCHHHHHHH
Confidence 56999999999999998888532 33444467999999999999999999999988 779999999999999
Q ss_pred hhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhc
Q 012719 109 VKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEK 187 (458)
Q Consensus 109 ~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
+|..| +++++|.+|... +|||+|+||+|+++|+|+-+..+..+|+++++|.+| ||..
T Consensus 742 IGaSEq~vR~lF~rA~~a---~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTel---DG~E---------------- 799 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSA---KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTEL---DGAE---------------- 799 (952)
T ss_pred hcccHHHHHHHHHHhhcc---CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhh---cccc----------------
Confidence 99998 799999999874 499999999999999999888888899999999887 2222
Q ss_pred cccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH-------hhHHHHhcCCCCh--hh
Q 012719 188 VAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL-------HDLDAANARPQGG--QD 258 (458)
Q Consensus 188 ~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l-------~~l~~~~~~~~g~--ad 258 (458)
--+.|+|.+.|.++..++.+.-+.+|+|. .++.|.| +...|.+|++.++- -|++.++..|.|| ||
T Consensus 800 --gl~GV~i~aaTsRpdliDpALLRpGRlD~--~v~C~~P--~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgAD 873 (952)
T KOG0735|consen 800 --GLDGVYILAATSRPDLIDPALLRPGRLDK--LVYCPLP--DEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGAD 873 (952)
T ss_pred --ccceEEEEEecCCccccCHhhcCCCccce--eeeCCCC--CcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhh
Confidence 23677888877666666666656666644 5666666 55568888887653 2999999999998 99
Q ss_pred HHHHHHhh
Q 012719 259 ILSLMGQM 266 (458)
Q Consensus 259 l~~l~~~~ 266 (458)
+.+++..+
T Consensus 874 lq~ll~~A 881 (952)
T KOG0735|consen 874 LQSLLYNA 881 (952)
T ss_pred HHHHHHHH
Confidence 98887664
No 53
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.92 E-value=2.1e-24 Score=194.54 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=105.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+++||++.|+..+|.+|.++||-+... -|.+++ +...++..|+.|||.+++|..+++.++.+.|.
T Consensus 115 KIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaC------------N~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~ 182 (333)
T KOG0991|consen 115 KIIILDEADSMTAGAQQALRRTMEIYSNTTRFALAC------------NQSEKIIEPIQSRCAILRYSKLSDQQILKRLL 182 (333)
T ss_pred eEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhh------------cchhhhhhhHHhhhHhhhhcccCHHHHHHHHH
Confidence 99999999999999999999999988776 678888 66789999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEV 435 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~ 435 (458)
..++.+++.++++.++.|+..+ +|++|.+++.|+. ...|-+.|+.+.|-.+
T Consensus 183 ~v~k~Ekv~yt~dgLeaiifta-~GDMRQalNnLQs-----t~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 183 EVAKAEKVNYTDDGLEAIIFTA-QGDMRQALNNLQS-----TVNGFGLVNQENVFKV 233 (333)
T ss_pred HHHHHhCCCCCcchHHHhhhhc-cchHHHHHHHHHH-----Hhccccccchhhhhhc
Confidence 9999999999999999999999 9999999999993 3345555665555443
No 54
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.92 E-value=2.6e-23 Score=206.92 Aligned_cols=127 Identities=28% Similarity=0.306 Sum_probs=112.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC------------------C-eEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS------------------P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~------------------~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
+|+||||+|.++...++.|+.+||+... + ++|.+| +.+..++++++|||
T Consensus 104 ~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at------------~~~~~l~~~L~sRf 171 (328)
T PRK00080 104 DVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT------------TRAGLLTSPLRDRF 171 (328)
T ss_pred CEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec------------CCcccCCHHHHHhc
Confidence 8999999999999999999999987532 2 455555 56678899999999
Q ss_pred cc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 361 VI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 361 ~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.. +.|++++.+++.++++..+...++.++++++.+|++.+ +|++|.+..++++++.+|...+...|+.+++..++..+
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~-~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 65 59999999999999999999999999999999999999 99999999999999998887777789999999998754
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.91 E-value=3.3e-23 Score=204.36 Aligned_cols=126 Identities=25% Similarity=0.281 Sum_probs=110.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-------------------eEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-------------------IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-------------------i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
.|+||||+|.++++.++.|+.+|++.... ++|.+| +.+..+.++++|||
T Consensus 83 ~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t------------~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 83 DVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT------------TRAGMLTSPLRDRF 150 (305)
T ss_pred CEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec------------CCccccCHHHHhhc
Confidence 79999999999999999999999865432 334444 55678899999999
Q ss_pred ccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 361 VII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 361 ~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
..+ .|.+++.+++.++++..+...++.++++++++|++.+ +|++|.+.++++.++.+|...+...|+.++|+.++..
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRS-RGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 655 9999999999999999999999999999999999999 9999999999999998887777777999999999875
No 56
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.1e-24 Score=194.54 Aligned_cols=226 Identities=22% Similarity=0.285 Sum_probs=172.4
Q ss_pred CCCCccccccchHHHHHHHHHHH--------HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVV--------DMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~--------~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|..+..|+.|..+..+.+++.+ ++++.|..|++++|+|||||||||.+|+++|+..+ ..|+.+-+|+++
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfirvigselv 248 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVIGSELV 248 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeehhHHHH
Confidence 46678999999999999998887 46688999999999999999999999999999887 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
.+|+|+.+ .++++|..|+. ++.|++|+||+|++.+.|.+.+.++ ++.+...++.|.++ +|+|.
T Consensus 249 qkyvgegarmvrelf~mart---kkaciiffdeidaiggarfddg~gg-dnevqrtmleli~q------------ldgfd 312 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMART---KKACIIFFDEIDAIGGARFDDGAGG-DNEVQRTMLELINQ------------LDGFD 312 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcc---cceEEEEeeccccccCccccCCCCC-cHHHHHHHHHHHHh------------ccCCC
Confidence 99999998 59999999987 5589999999999999998775444 44555555555444 45554
Q ss_pred hhccccCCeEEEeccC------cccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhc
Q 012719 185 KEKVAVGDVIYIEANS------GAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANA 251 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~------~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~ 251 (458)
..|++-++.+|+ +++.+|||.++ .+.+..| +.+.|-.|+...+ .+ .++.++.
T Consensus 313 ----prgnikvlmatnrpdtldpallrpgrldr---------kvef~lp--dlegrt~i~kihaksmsverdir~ellar 377 (435)
T KOG0729|consen 313 ----PRGNIKVLMATNRPDTLDPALLRPGRLDR---------KVEFGLP--DLEGRTHIFKIHAKSMSVERDIRFELLAR 377 (435)
T ss_pred ----CCCCeEEEeecCCCCCcCHhhcCCccccc---------ceeccCC--cccccceeEEEeccccccccchhHHHHHh
Confidence 678888888887 55667777665 4445555 4555666654322 22 6777777
Q ss_pred CCCC--hhhHHHHHHhh-----ccchhHHHhHHHHHHHHHHHHHHHhh
Q 012719 252 RPQG--GQDILSLMGQM-----MKPRKTEITDKLRQEINKVVNRFIDE 292 (458)
Q Consensus 252 ~~~g--~adl~~l~~~~-----~~~~~~~i~~~~~~~i~~~~~~~~~~ 292 (458)
.+.. +++++++|... ...++.....++.+.++++++.|..-
T Consensus 378 lcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 378 LCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred hCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 7655 49999887553 22333334468888999999988653
No 57
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.91 E-value=3.7e-23 Score=213.18 Aligned_cols=241 Identities=17% Similarity=0.150 Sum_probs=187.7
Q ss_pred CCCccCCCCCCccccccchHHHHHHHHHHHHHH-----HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 27 LGLEANGNAVPLAAGFVGQVEAREAAGLVVDMI-----RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 27 ~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~-----~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++.+...+..+|++|.|++.+|+.+......+ ..|..+++++|||||||||||++|+++|++++ .||+.++.
T Consensus 215 ~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~~~l~~ 292 (489)
T CHL00195 215 TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPLLRLDV 292 (489)
T ss_pred hccccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEEEh
Confidence 356677778889999999999999887643322 33666789999999999999999999999998 78999999
Q ss_pred CcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHH
Q 012719 102 SEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIY 180 (458)
Q Consensus 102 ~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 180 (458)
+.+.++++|+++ +++++|+.|.. ..|||+||||+|++++++......+
T Consensus 293 ~~l~~~~vGese~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~---------------------------- 341 (489)
T CHL00195 293 GKLFGGIVGESESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSG---------------------------- 341 (489)
T ss_pred HHhcccccChHHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCch----------------------------
Confidence 999999999988 69999998876 4599999999999876532210000
Q ss_pred HHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHH
Q 012719 181 DALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDIL 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~ 260 (458)
T Consensus 342 -------------------------------------------------------------------------------- 341 (489)
T CHL00195 342 -------------------------------------------------------------------------------- 341 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCcccc
Q 012719 261 SLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICN 340 (458)
Q Consensus 261 ~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~ 340 (458)
.....++.|+.+|++...++++++|.
T Consensus 342 -------------------------------------------------~~~rvl~~lL~~l~~~~~~V~vIaTT----- 367 (489)
T CHL00195 342 -------------------------------------------------TTNRVLATFITWLSEKKSPVFVVATA----- 367 (489)
T ss_pred -------------------------------------------------HHHHHHHHHHHHHhcCCCceEEEEec-----
Confidence 01124456677777666675444442
Q ss_pred ccCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCc-cCHHHHHHHHHHhhcCCHHHHHHhhHHHH
Q 012719 341 IRGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIV-LDEESLAHLGEIARDTSLRHAVQLLYPAS 416 (458)
Q Consensus 341 ~~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~-i~~~~l~~i~~~~~~g~~r~a~~ll~~a~ 416 (458)
+.+..|+++++. ||..+ .++.|+.++..+|++...++.+.. .++..++.+++.+...+.+...+++..|.
T Consensus 368 ------N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 368 ------NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred ------CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 788899999975 88655 999999999999999988876543 44566889999985668888888888888
Q ss_pred HHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 417 VVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 417 ~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
..|...++. +|.+|+..++.-+..
T Consensus 442 ~~A~~~~~~-lt~~dl~~a~~~~~P 465 (489)
T CHL00195 442 YIAFYEKRE-FTTDDILLALKQFIP 465 (489)
T ss_pred HHHHHcCCC-cCHHHHHHHHHhcCC
Confidence 888666654 899999999885443
No 58
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=4.9e-23 Score=218.54 Aligned_cols=119 Identities=26% Similarity=0.336 Sum_probs=107.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|.|+.+++|+|++.||+++.. ++|++| +++..+.++++|||..+.|.+++.+++...+.
T Consensus 123 KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t------------~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 123 KVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLAT------------TDPQRVLPTIISRCQRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred eEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEe------------CChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 89999999999999999999999999888 778888 67888999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVK 436 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~ 436 (458)
.+++++++.++++++..|++.+ +|++|.|+++|+....+. +.||.++|...+
T Consensus 191 ~ia~kegi~is~~al~~La~~s-~G~lr~A~~lLeklsL~~-----~~It~e~V~~lv 242 (620)
T PRK14948 191 EIAEKESIEIEPEALTLVAQRS-QGGLRDAESLLDQLSLLP-----GPITPEAVWDLL 242 (620)
T ss_pred HHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc-----CCCCHHHHHHHh
Confidence 9999999999999999999999 999999999999765432 347777776544
No 59
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=1.7e-22 Score=207.85 Aligned_cols=122 Identities=29% Similarity=0.297 Sum_probs=109.5
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||++.|+.+++|.|++.||+++.. ++|+++ +.+..+.++++|||..+.|.+++++++.+++
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t------------~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L 189 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLAT------------TEIHKIPGTILSRCQKMHLKRIPEETIIDKL 189 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEe------------CChHhcchHHHHhceEEeCCCCCHHHHHHHH
Confidence 399999999999999999999999999877 777788 6678999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
...++++++.+++++++.|+..+ +|++|.+++.++.+..+. + +.||.++|..+++
T Consensus 190 ~~~~~~eg~~i~~~al~~L~~~s-~gdlr~a~~~Lekl~~~~---~-~~It~~~V~~l~~ 244 (451)
T PRK06305 190 ALIAKQEGIETSREALLPIARAA-QGSLRDAESLYDYVVGLF---P-KSLDPDSVAKALG 244 (451)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCcCHHHHHHHHC
Confidence 99999999999999999999999 999999999999766542 3 3489888877654
No 60
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1.3e-22 Score=215.20 Aligned_cols=121 Identities=29% Similarity=0.355 Sum_probs=109.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||+|.|+.+++|+|++.||+++.. ++|++| +....|.++|+|||..+.|.+++.+++.++++
T Consensus 123 KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t------------t~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~ 190 (614)
T PRK14971 123 KIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT------------TEKHKILPTILSRCQIFDFNRIQVADIVNHLQ 190 (614)
T ss_pred EEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe------------CCchhchHHHHhhhheeecCCCCHHHHHHHHH
Confidence 99999999999999999999999999887 788888 66789999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++++|+.++++++..|++.+ +||+|.+++.|+.+..++ |.. ||.++|...+.
T Consensus 191 ~ia~~egi~i~~~al~~La~~s-~gdlr~al~~Lekl~~y~---~~~-It~~~V~~~l~ 244 (614)
T PRK14971 191 YVASKEGITAEPEALNVIAQKA-DGGMRDALSIFDQVVSFT---GGN-ITYKSVIENLN 244 (614)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---cCC-ccHHHHHHHhC
Confidence 9999999999999999999999 999999999999776665 333 88877766543
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.90 E-value=2e-23 Score=199.02 Aligned_cols=226 Identities=21% Similarity=0.250 Sum_probs=173.4
Q ss_pred cCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCC
Q 012719 24 IKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGS 102 (458)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~ 102 (458)
+++.++.+...|+ +++|++||+++...-..+.++++.+..| +++||||||||||+||+.|+..... ++.|+++++.
T Consensus 123 ~qh~PLaermRPk-tL~dyvGQ~hlv~q~gllrs~ieq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 123 LQHKPLAERMRPK-TLDDYVGQSHLVGQDGLLRSLIEQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hccCChhhhcCcc-hHHHhcchhhhcCcchHHHHHHHcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 5889999999996 6999999999988866777888988887 9999999999999999999987642 2346666653
Q ss_pred cccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHH
Q 012719 103 EVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDA 182 (458)
Q Consensus 103 ~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 182 (458)
.- .+..++.+|+++..
T Consensus 200 ~a------~t~dvR~ife~aq~---------------------------------------------------------- 215 (554)
T KOG2028|consen 200 NA------KTNDVRDIFEQAQN---------------------------------------------------------- 215 (554)
T ss_pred cc------chHHHHHHHHHHHH----------------------------------------------------------
Confidence 32 22234444443331
Q ss_pred HhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHH
Q 012719 183 LIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSL 262 (458)
Q Consensus 183 ~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l 262 (458)
T Consensus 216 -------------------------------------------------------------------------------- 215 (554)
T KOG2028|consen 216 -------------------------------------------------------------------------------- 215 (554)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCcccccc
Q 012719 263 MGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIR 342 (458)
Q Consensus 263 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~ 342 (458)
.+..-++. .||||||+|+++...|+.||..+|+....++..+|
T Consensus 216 -------------------------~~~l~krk----TilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATT-------- 258 (554)
T KOG2028|consen 216 -------------------------EKSLTKRK----TILFIDEIHRFNKSQQDTFLPHVENGDITLIGATT-------- 258 (554)
T ss_pred -------------------------HHhhhcce----eEEEeHHhhhhhhhhhhcccceeccCceEEEeccc--------
Confidence 11111122 89999999999999999999999987543333222
Q ss_pred CCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHH----hc---------CCccCHHHHHHHHHHhhcCCHHHHH
Q 012719 343 GTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQ----VE---------EIVLDEESLAHLGEIARDTSLRHAV 409 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~----~~---------~~~i~~~~l~~i~~~~~~g~~r~a~ 409 (458)
-+....|..+|+|||.++.+++++.+++..||.+... .+ .+.+++.++++++.++ .|+.|.++
T Consensus 259 ---ENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls-dGDaR~aL 334 (554)
T KOG2028|consen 259 ---ENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS-DGDARAAL 334 (554)
T ss_pred ---CCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc-CchHHHHH
Confidence 1667899999999999999999999999999987433 11 1348899999999999 99999999
Q ss_pred HhhHHHHHHHhhhCC----CCccHHHHHHHHH
Q 012719 410 QLLYPASVVAKMNGR----DSICKADVEEVKA 437 (458)
Q Consensus 410 ~ll~~a~~~a~~~~~----~~it~~~v~~~~~ 437 (458)
+.|+++..+...+.. ..++.+||++++.
T Consensus 335 N~Lems~~m~~tr~g~~~~~~lSidDvke~lq 366 (554)
T KOG2028|consen 335 NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQ 366 (554)
T ss_pred HHHHHHHHHHHhhcCCcccceecHHHHHHHHh
Confidence 999998665554433 3699999999876
No 62
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.3e-24 Score=197.53 Aligned_cols=222 Identities=25% Similarity=0.331 Sum_probs=164.0
Q ss_pred CCCCccccccchHHHHHHHHHHHH--------HHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVD--------MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~--------~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|..+++|+.|.++..+.+++.++ +-..|..||+++++||+||||||.||+|+|+... .-|+++.+++++
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS--ATFlRvvGseLi 256 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELI 256 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc--hhhhhhhhHHHH
Confidence 367899999999999998887774 2256888899999999999999999999999887 569999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
..|.|... .++++|+.|.. ++|+|+||||+|++..+|.++.+++ .+.+...++.|-.+ +|+|.
T Consensus 257 QkylGdGpklvRqlF~vA~e---~apSIvFiDEIdAiGtKRyds~Sgg-erEiQrtmLELLNQ------------ldGFd 320 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEE---HAPSIVFIDEIDAIGTKRYDSNSGG-EREIQRTMLELLNQ------------LDGFD 320 (440)
T ss_pred HHHhccchHHHHHHHHHHHh---cCCceEEeehhhhhccccccCCCcc-HHHHHHHHHHHHHh------------ccCcc
Confidence 99999998 59999999987 5699999999999999998876665 34455545554333 44444
Q ss_pred hhccccCCeEEEeccC------cccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhc
Q 012719 185 KEKVAVGDVIYIEANS------GAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANA 251 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~------~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~ 251 (458)
..||+-+|.+|+ +++.||||.|+ .+.+|.| +...++.|++..| +. +++.+.-
T Consensus 321 ----srgDvKvimATnrie~LDPaLiRPGrIDr---------KIef~~p--De~TkkkIf~IHTs~Mtl~~dVnle~li~ 385 (440)
T KOG0726|consen 321 ----SRGDVKVIMATNRIETLDPALIRPGRIDR---------KIEFPLP--DEKTKKKIFQIHTSRMTLAEDVNLEELIM 385 (440)
T ss_pred ----ccCCeEEEEecccccccCHhhcCCCcccc---------ccccCCC--chhhhceeEEEeecccchhccccHHHHhh
Confidence 578999999988 77788888876 6666666 5666776665433 22 3333343
Q ss_pred CCC--ChhhHHHHHHhhc-----cchhHHHhHHHHHHHHHHHHH
Q 012719 252 RPQ--GGQDILSLMGQMM-----KPRKTEITDKLRQEINKVVNR 288 (458)
Q Consensus 252 ~~~--g~adl~~l~~~~~-----~~~~~~i~~~~~~~i~~~~~~ 288 (458)
..+ .+||+.++|..+. ..+.....+++++...+++..
T Consensus 386 ~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 386 TKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred cccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 333 3499999986642 122222234555555544443
No 63
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-23 Score=218.43 Aligned_cols=205 Identities=22% Similarity=0.283 Sum_probs=160.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHH-------hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 32 NGNAVPLAAGFVGQVEAREAAGLVVDMIR-------QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 32 ~~~~~~~l~~liG~~~~~~~l~~l~~~~~-------~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
..+..-+|+|+.|.+++|..+.+++++++ .|...|+++||+||||||||.||+|+|.+.+ +||+.++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--CceeeechHHH
Confidence 34455789999999999999999998774 4556689999999999999999999999999 99999999999
Q ss_pred cchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCC----ccCCchhhHHHHHHhhccccccccccCChhH
Q 012719 105 YSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETES----ITGGYGKSISHVIIGLKTVKGTKQLKLDPTI 179 (458)
Q Consensus 105 ~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (458)
+..++|..+ .++++|..|+. ++||++|+||+|++...|.+. +.......++|+|..|
T Consensus 381 vE~~~g~~asrvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em--------------- 442 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM--------------- 442 (774)
T ss_pred HHHhcccchHHHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh---------------
Confidence 999999966 69999999986 559999999999999998531 2222346677777664
Q ss_pred HHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhc----C----HhhHHHHhc
Q 012719 180 YDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDV----T----LHDLDAANA 251 (458)
Q Consensus 180 ~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~----~----l~~l~~~~~ 251 (458)
|++. ..+.+++.++||++..++.+..+.+|||. .+.++.| ++..|..|++.. . ..++..++.
T Consensus 443 -Dgf~-----~~~~vi~~a~tnr~d~ld~allrpGRfdr--~i~i~~p--~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~ 512 (774)
T KOG0731|consen 443 -DGFE-----TSKGVIVLAATNRPDILDPALLRPGRFDR--QIQIDLP--DVKGRASILKVHLRKKKLDDEDVDLSKLAS 512 (774)
T ss_pred -cCCc-----CCCcEEEEeccCCccccCHHhcCCCcccc--ceeccCC--chhhhHHHHHHHhhccCCCcchhhHHHHHh
Confidence 3332 23556666777787777777778888877 4555666 555677776542 2 226777999
Q ss_pred CCCCh--hhHHHHHHhh
Q 012719 252 RPQGG--QDILSLMGQM 266 (458)
Q Consensus 252 ~~~g~--adl~~l~~~~ 266 (458)
.|+|+ +||..+|++.
T Consensus 513 ~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 513 LTPGFSGADLANLCNEA 529 (774)
T ss_pred cCCCCcHHHHHhhhhHH
Confidence 99997 9999988663
No 64
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=4.1e-22 Score=211.88 Aligned_cols=122 Identities=30% Similarity=0.336 Sum_probs=110.0
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|+||||+|.|+.+.+|.|++.||+++.. ++|+++ ++...++++++|||..+.|.+++..++.+++
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t------------~~~~kll~tI~SR~~~i~f~~l~~~el~~~L 188 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILAT------------TEVHKVPATILSRCQRFDFHRHSVADMAAHL 188 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEe------------CChhhhhHHHHhccceeeCCCCCHHHHHHHH
Confidence 499999999999999999999999999876 777777 6678899999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+.++.++++.++++++..|+..+ +||+|.+++.|+....+ +.+.||.++|+..++
T Consensus 189 ~~~a~~egl~i~~eal~~La~~s-~Gdlr~al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 189 RKIAAAEGINLEPGALEAIARAA-TGSMRDAENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 99999999999999999999999 99999999999976543 345699999987655
No 65
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.90 E-value=2.2e-22 Score=193.88 Aligned_cols=115 Identities=23% Similarity=0.229 Sum_probs=87.4
Q ss_pred eEEEEcccchhc--------HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc-ccccCCCCH
Q 012719 300 GVLFIDEVHMLD--------MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV-IIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~--------~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~ 370 (458)
+||||||+|.|. .+.++.|++.||+....++++.++.. .+++....++|+++|||. .+.|++|+.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~------~~~~~~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYS------DEMDYFLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCc------chhHHHHhcChHHHhccceEEEECCCCH
Confidence 677777777764 46789999999998777444344211 112233457889999995 469999999
Q ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHhh---------cCCHHHHHHhhHHHHHHHh
Q 012719 371 AEMIQILAIRAQVEEIVLDEESLAHLGEIAR---------DTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~---------~g~~r~a~~ll~~a~~~a~ 420 (458)
+++.+|++..+...+..++++++++|.+... .|+.|.+.++++.|.....
T Consensus 181 ~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 181 EELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976421 3789999999998775443
No 66
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.89 E-value=1.2e-21 Score=198.06 Aligned_cols=244 Identities=20% Similarity=0.213 Sum_probs=184.4
Q ss_pred hcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 21 HTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
++.++.+.+.+ .|..+|+||+|++.+++.+...+.+. ..|..+++++||+||||||||++|+++|+.++
T Consensus 128 ~~~~~~~~~~~--~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~- 204 (398)
T PTZ00454 128 DSSIQLLQMSE--KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT- 204 (398)
T ss_pred cchhhhhcccC--CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-
Confidence 44445555444 57789999999999999998877532 33566789999999999999999999999998
Q ss_pred CccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccc
Q 012719 93 KVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTK 171 (458)
Q Consensus 93 ~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 171 (458)
.+|+.+.++++...|+|.++ .+++.|..|.. ..|+++|+||+|++++++.+...+. .+.+..
T Consensus 205 -~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~-d~~~~r------------ 267 (398)
T PTZ00454 205 -ATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGA-DREVQR------------ 267 (398)
T ss_pred -CCEEEEehHHHHHHhcchhHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCc-cHHHHH------------
Confidence 67999999999999999987 58999998875 5599999999999987764321100 000000
Q ss_pred cccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhc
Q 012719 172 QLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANA 251 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~ 251 (458)
T Consensus 268 -------------------------------------------------------------------------------- 267 (398)
T PTZ00454 268 -------------------------------------------------------------------------------- 267 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-
Q 012719 252 RPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP- 328 (458)
Q Consensus 252 ~~~g~adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~- 328 (458)
....|+..|+.. ...
T Consensus 268 --------------------------------------------------------------~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 268 --------------------------------------------------------------ILLELLNQMDGFDQTTNV 285 (398)
T ss_pred --------------------------------------------------------------HHHHHHHHhhccCCCCCE
Confidence 112233333321 123
Q ss_pred eEEEecCCccccccCCCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCH
Q 012719 329 IVIFATNRGICNIRGTDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSL 405 (458)
Q Consensus 329 i~il~tn~~~~~~~~~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~ 405 (458)
++|++| +.+..++|++++ |+.. +.|+.|+.++...|++....+.++.-+ -.+..++..+...+.
T Consensus 286 ~VI~aT------------N~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-vd~~~la~~t~g~sg 352 (398)
T PTZ00454 286 KVIMAT------------NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-VDLEDFVSRPEKISA 352 (398)
T ss_pred EEEEec------------CCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-cCHHHHHHHcCCCCH
Confidence 567777 678899999885 7854 499999999999999988877665422 235677777745688
Q ss_pred HHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 406 RHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 406 r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+....++..|...|...++..|+.+|+..|+.-.
T Consensus 353 aDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 353 ADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 9999999999999988888899999999998854
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.89 E-value=7.6e-22 Score=198.74 Aligned_cols=121 Identities=31% Similarity=0.420 Sum_probs=109.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||++.++.+.++.|++.+|+++.. ++|+++ +++..++++++|||..+.|++++++++.+++.
T Consensus 119 ~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~------------~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~ 186 (355)
T TIGR02397 119 KVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT------------TEPHKIPATILSRCQRFDFKRIPLEDIVERLK 186 (355)
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe------------CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHH
Confidence 89999999999999999999999998877 667777 66778899999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++++++.++++++..+++.+ +|++|.+.+.++.+..++ .+.||.++|+.+++
T Consensus 187 ~~~~~~g~~i~~~a~~~l~~~~-~g~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 187 KILDKEGIKIEDEALELIARAA-DGSLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 9999999999999999999999 999999999999877654 24599999988765
No 68
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.5e-22 Score=183.94 Aligned_cols=217 Identities=14% Similarity=0.229 Sum_probs=161.2
Q ss_pred HhhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHH--------HHHHhcccCCceEEEEcCCCChHHHHHHHHHHH
Q 012719 18 VAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVV--------DMIRQKKMAGRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~--------~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
.-.+|++++..+++. |.+.++|+.|.+...+.+.+.+ ++-+.|..||+++|+|||||||||.+||+.|..
T Consensus 151 ~eyDsrVkaMevDek--PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 151 SEYDSRVKAMEVDEK--PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred hhhhhhcceeeeccC--CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 456788888777664 6778999999998887665544 344668888999999999999999999999999
Q ss_pred hCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhcccc
Q 012719 90 LGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVK 168 (458)
Q Consensus 90 l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 168 (458)
.+ .-|..+.++.++..++|..+ .++++|.-|.+ ++|++|||||+|+|..+|.++...+ +|.+...++.|..+
T Consensus 229 T~--aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~G-DREVQRTMLELLNQ- 301 (424)
T KOG0652|consen 229 TN--ATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAG-DREVQRTMLELLNQ- 301 (424)
T ss_pred cc--chHHHhcchHHHhhhhcchHHHHHHHHHHhhc---cCCeEEEEechhhhccccccccccc-cHHHHHHHHHHHHh-
Confidence 98 55999999999999999998 58999998886 5699999999999999998764333 45555555554222
Q ss_pred ccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh
Q 012719 169 GTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH 244 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~ 244 (458)
+|+| ...+.+-|.+.||++..++.+.-+.+|.|. .+.+|.|..+. |..|++..+ .+
T Consensus 302 -----------LDGF-----ss~~~vKviAATNRvDiLDPALlRSGRLDR--KIEfP~Pne~a--RarIlQIHsRKMnv~ 361 (424)
T KOG0652|consen 302 -----------LDGF-----SSDDRVKVIAATNRVDILDPALLRSGRLDR--KIEFPHPNEEA--RARILQIHSRKMNVS 361 (424)
T ss_pred -----------hcCC-----CCccceEEEeecccccccCHHHhhcccccc--cccCCCCChHH--HHHHHHHhhhhcCCC
Confidence 2222 345666666777777777777767777766 44556664444 555544432 22
Q ss_pred ---hHHHHhcCCCCh--hhHHHHH
Q 012719 245 ---DLDAANARPQGG--QDILSLM 263 (458)
Q Consensus 245 ---~l~~~~~~~~g~--adl~~l~ 263 (458)
+++.++..|++| +...++|
T Consensus 362 ~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 362 DDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred CCCCHHHHhhcccccCchhheeee
Confidence 788889999887 6666554
No 69
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-22 Score=181.89 Aligned_cols=199 Identities=21% Similarity=0.291 Sum_probs=152.0
Q ss_pred CCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
|..+++-+.|.+...+.+++.+++. .-|...|+++|+|||||||||.+|+++|.+..|. |+.+++++++.
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~--firvsgselvq 219 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--FIRVSGSELVQ 219 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE--EEEechHHHHH
Confidence 5667888999999999898888532 3467778999999999999999999999999854 99999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
+|+|+.. .++++|-.|++ ++|++||.||+|++.+.|.+.+.++ +..+...++.|-.+ +|+|.
T Consensus 220 k~igegsrmvrelfvmare---hapsiifmdeidsigs~r~e~~~gg-dsevqrtmlellnq------------ldgfe- 282 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGG-DSEVQRTMLELLNQ------------LDGFE- 282 (404)
T ss_pred HHhhhhHHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCc-cHHHHHHHHHHHHh------------ccccc-
Confidence 9999998 59999999886 7799999999999999998776554 34444444444222 33332
Q ss_pred hccccCCeEEEeccC------cccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHh-------hHHHHhcC
Q 012719 186 EKVAVGDVIYIEANS------GAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLH-------DLDAANAR 252 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~------~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~-------~l~~~~~~ 252 (458)
...++-+|.+|+ +++.+|||.|+ .+.+|.| +...|.+|+...+.. ++..++..
T Consensus 283 ---atknikvimatnridild~allrpgridr---------kiefp~p--~e~ar~~ilkihsrkmnl~rgi~l~kiaek 348 (404)
T KOG0728|consen 283 ---ATKNIKVIMATNRIDILDPALLRPGRIDR---------KIEFPPP--NEEARLDILKIHSRKMNLTRGINLRKIAEK 348 (404)
T ss_pred ---cccceEEEEeccccccccHhhcCCCcccc---------cccCCCC--CHHHHHHHHHHhhhhhchhcccCHHHHHHh
Confidence 234666777766 55666776665 5556666 666788887664432 88888999
Q ss_pred CCCh--hhHHHHHHhh
Q 012719 253 PQGG--QDILSLMGQM 266 (458)
Q Consensus 253 ~~g~--adl~~l~~~~ 266 (458)
..|. |++..+|...
T Consensus 349 m~gasgaevk~vctea 364 (404)
T KOG0728|consen 349 MPGASGAEVKGVCTEA 364 (404)
T ss_pred CCCCccchhhhhhhhh
Confidence 8884 8888887553
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=1e-21 Score=197.97 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=86.2
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
.++|+||||+|+|+++++|+|+++||+|+.. ++|++| +++..++|+++|||+.+.|++++.+++.++
T Consensus 117 ~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a------------~~~~~llpTIrSRc~~i~f~~~~~~~i~~~ 184 (394)
T PRK07940 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA------------PSPEDVLPTIRSRCRHVALRTPSVEAVAEV 184 (394)
T ss_pred CcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE------------CChHHChHHHHhhCeEEECCCCCHHHHHHH
Confidence 3499999999999999999999999999877 788888 678999999999999999999999999998
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhh
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll 412 (458)
|... ..++++.+..++..+ +|+++.|+.++
T Consensus 185 L~~~-----~~~~~~~a~~la~~s-~G~~~~A~~l~ 214 (394)
T PRK07940 185 LVRR-----DGVDPETARRAARAS-QGHIGRARRLA 214 (394)
T ss_pred HHHh-----cCCCHHHHHHHHHHc-CCCHHHHHHHh
Confidence 8743 246788899999999 99998887664
No 71
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=2.8e-21 Score=189.85 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=93.6
Q ss_pred HHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccC
Q 012719 287 NRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQ 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~ 366 (458)
.++......+..++|++||+++.|+.+++|+|||+||+|+..++|+.+ +++..|+|+++|||+.+.|+
T Consensus 113 ~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~------------~~~~~Ll~TI~SRcq~i~f~ 180 (314)
T PRK07399 113 KRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIA------------PSPESLLPTIVSRCQIIPFY 180 (314)
T ss_pred HHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEE------------CChHhCcHHHHhhceEEecC
Confidence 334444444445599999999999999999999999999944888888 78899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHH
Q 012719 367 IYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPAS 416 (458)
Q Consensus 367 ~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~ 416 (458)
+++++++.++|......++.. .....++..+ +|+++.|+.+++...
T Consensus 181 ~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a-~Gs~~~al~~l~~~~ 226 (314)
T PRK07399 181 RLSDEQLEQVLKRLGDEEILN---INFPELLALA-QGSPGAAIANIEQLQ 226 (314)
T ss_pred CCCHHHHHHHHHHhhccccch---hHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 999999999999875433322 1256788899 999999999887543
No 72
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.88 E-value=2e-21 Score=203.49 Aligned_cols=233 Identities=24% Similarity=0.290 Sum_probs=179.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.|..+|+|++|+++++..+..++.+++. +..+++++||+||||||||++|+++|.+++ +||+.++++++..
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~ 126 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVE 126 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCeeeccHHHHHH
Confidence 5678999999999999999888875542 455678999999999999999999999998 7899999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
.+.+.++ .+++.|+.|.. ..||+||+||+|++++++........
T Consensus 127 ~~~g~~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~-------------------------------- 171 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGN-------------------------------- 171 (495)
T ss_pred HHhcccHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCcc--------------------------------
Confidence 9998877 69999999875 45999999999999876543100000
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHh
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQ 265 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~ 265 (458)
T Consensus 172 -------------------------------------------------------------------------------- 171 (495)
T TIGR01241 172 -------------------------------------------------------------------------------- 171 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCC--C-eEEEecCCcccccc
Q 012719 266 MMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLS--P-IVIFATNRGICNIR 342 (458)
Q Consensus 266 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~--~-i~il~tn~~~~~~~ 342 (458)
.-.....+.|+..|+.... . ++|.+|
T Consensus 172 -------------------------------------------~~~~~~~~~lL~~~d~~~~~~~v~vI~aT-------- 200 (495)
T TIGR01241 172 -------------------------------------------DEREQTLNQLLVEMDGFGTNTGVIVIAAT-------- 200 (495)
T ss_pred -------------------------------------------HHHHHHHHHHHhhhccccCCCCeEEEEec--------
Confidence 0001133445555544322 2 556666
Q ss_pred CCCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 343 GTDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+.+..|.|.+++ |+.. +.++.++.++..+|++..++..... ++..+..++..+...+.+++..+++.|...|
T Consensus 201 ----n~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a 275 (495)
T TIGR01241 201 ----NRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLA 275 (495)
T ss_pred ----CChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 678899999986 7754 4999999999999999888765544 3445778888883447888889999888877
Q ss_pred hhhCCCCccHHHHHHHHHhh
Q 012719 420 KMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 420 ~~~~~~~it~~~v~~~~~~~ 439 (458)
...+...||.+++..|+.-.
T Consensus 276 ~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 276 ARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHcCCCCCCHHHHHHHHHHH
Confidence 77777889999999998854
No 73
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=2.5e-21 Score=195.88 Aligned_cols=121 Identities=28% Similarity=0.370 Sum_probs=109.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||++.++...++.|++.+|+++.. ++|+++ +.+..+.++++|||..+.|.+++++++..++.
T Consensus 110 kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~------------~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 110 KIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILAT------------TEKHKIIPTILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred EEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEe------------CCcccCCHHHHhcceeEecCCccHHHHHHHHH
Confidence 89999999999999999999999998776 777777 56789999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..++++++.+++++++.|+..+ +||+|.+.+.|+....++ +.. ||.++|+.++.
T Consensus 178 ~~~~~~g~~i~~~al~~l~~~~-~gdlr~~~~~lekl~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 178 GIAVKEGIKFEDDALHIIAQKA-DGALRDALSIFDRVVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc---CCC-CCHHHHHHHhC
Confidence 9999999999999999999999 999999999999887765 333 99999987765
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=7.4e-21 Score=189.32 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=90.6
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
+.|++|||+|.|+.+++|+||+.+|+|+.. ++|+.+ +.+..++|+++|||..+.|++++.+++.++|
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit------------~~~~~llptIrSRc~~i~l~pl~~~~~~~~L 209 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS------------HSSGRLLPTIRSRCQPISLKPLDDDELKKAL 209 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE------------CChhhccHHHHhhccEEEecCCCHHHHHHHH
Confidence 399999999999999999999999998876 777788 6788999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYP 414 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~ 414 (458)
...+...+ ++++++..++..+ +|++|.|+.+++.
T Consensus 210 ~~~~~~~~--~~~~~~~~i~~~s-~G~pr~Al~ll~~ 243 (351)
T PRK09112 210 SHLGSSQG--SDGEITEALLQRS-KGSVRKALLLLNY 243 (351)
T ss_pred HHhhcccC--CCHHHHHHHHHHc-CCCHHHHHHHHhc
Confidence 98654433 7899999999999 9999999999853
No 75
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.87 E-value=5.4e-21 Score=191.10 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=105.7
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
.++++|||++.++.+.++.|++.+|+++.. .+|+++ +.+..+.+++++||..+.|.+++.+++.+++
T Consensus 126 ~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~------------~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l 193 (337)
T PRK12402 126 YKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIAT------------RQPSKLIPPIRSRCLPLFFRAPTDDELVDVL 193 (337)
T ss_pred CcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEe------------CChhhCchhhcCCceEEEecCCCHHHHHHHH
Confidence 489999999999999999999999987765 667677 4456788899999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+..++++++.+++++++.|++.+ .|++|.+++.|+.+. .+.+.||.++|..++.
T Consensus 194 ~~~~~~~~~~~~~~al~~l~~~~-~gdlr~l~~~l~~~~-----~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 194 ESIAEAEGVDYDDDGLELIAYYA-GGDLRKAILTLQTAA-----LAAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH-----HcCCCCCHHHHHHHhC
Confidence 99999999999999999999999 999999998888543 2234699999988765
No 76
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.8e-22 Score=204.87 Aligned_cols=202 Identities=23% Similarity=0.364 Sum_probs=159.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHhc-------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMIRQK-------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~~~~-------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
..+.+|+|+.|.+++++.+.+++++++.. ..-|++++++||||||||.||+++|.+.+ +||+.+|+|+++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCceeccchhhhh
Confidence 45678999999999999999999888643 24579999999999999999999999999 9999999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCc---hhhHHHHHHhhccccccccccCChhHHHH
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGY---GKSISHVIIGLKTVKGTKQLKLDPTIYDA 182 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 182 (458)
.++|-.+ .+++.|.+|+. ++|||+||||+|++...|+....++. ....+|+|..+ |+
T Consensus 222 mfVGvGAsRVRdLF~qAkk---~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm----------------DG 282 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM----------------DG 282 (596)
T ss_pred hhcCCCcHHHHHHHHHhhc---cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh----------------cc
Confidence 9999988 69999999986 55999999999999998865522222 24566676663 33
Q ss_pred HhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhcCCCC
Q 012719 183 LIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANARPQG 255 (458)
Q Consensus 183 ~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~~~~g 255 (458)
+. .++.|.+.+.||++..++.+..+.+|||. ++.++.| ++..|.++++... +. ++..++..|.|
T Consensus 283 F~-----~~~gviviaaTNRpdVlD~ALlRpgRFDR--qI~V~~P--Di~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpG 353 (596)
T COG0465 283 FG-----GNEGVIVIAATNRPDVLDPALLRPGRFDR--QILVELP--DIKGREQILKVHAKNKPLAEDVDLKKIARGTPG 353 (596)
T ss_pred CC-----CCCceEEEecCCCcccchHhhcCCCCcce--eeecCCc--chhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCC
Confidence 32 23456666777788888888888888877 5556666 5666888776322 11 67778899999
Q ss_pred h--hhHHHHHHh
Q 012719 256 G--QDILSLMGQ 265 (458)
Q Consensus 256 ~--adl~~l~~~ 265 (458)
+ +|+..+++.
T Consensus 354 fsGAdL~nl~NE 365 (596)
T COG0465 354 FSGADLANLLNE 365 (596)
T ss_pred cccchHhhhHHH
Confidence 7 999988733
No 77
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.8e-21 Score=200.48 Aligned_cols=232 Identities=24% Similarity=0.268 Sum_probs=185.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHH-------H-hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 32 NGNAVPLAAGFVGQVEAREAAGLVVDMI-------R-QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 32 ~~~~~~~l~~liG~~~~~~~l~~l~~~~-------~-~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
...+..+|.++.|.+.++..+...+.+. . .+..+++++|||||||||||++|+++|.+++ .+|+.+.+++
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~ 311 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSE 311 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHH
Confidence 3457789999999999999998888544 1 1556778999999999999999999999998 7899999999
Q ss_pred ccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHH
Q 012719 104 VYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDA 182 (458)
Q Consensus 104 ~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 182 (458)
+.++|+|+++ ++++.|..|.. .+||+||+||+|++++.++.+..+...+.+++
T Consensus 312 l~sk~vGesek~ir~~F~~A~~---~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~----------------------- 365 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARK---LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQ----------------------- 365 (494)
T ss_pred HhccccchHHHHHHHHHHHHHc---CCCcEEEEEchhhhhccCCCCCchHHHHHHHH-----------------------
Confidence 9999999999 69999999996 45999999999999998876532222233333
Q ss_pred HhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHH
Q 012719 183 LIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSL 262 (458)
Q Consensus 183 ~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l 262 (458)
T Consensus 366 -------------------------------------------------------------------------------- 365 (494)
T COG0464 366 -------------------------------------------------------------------------------- 365 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhh--ccCCC-eEEEecCCccc
Q 012719 263 MGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALE--SSLSP-IVIFATNRGIC 339 (458)
Q Consensus 263 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE--~~~~~-i~il~tn~~~~ 339 (458)
|+..|+ +.... ++|.+|
T Consensus 366 -------------------------------------------------------lL~~~d~~e~~~~v~vi~aT----- 385 (494)
T COG0464 366 -------------------------------------------------------LLTELDGIEKAEGVLVIAAT----- 385 (494)
T ss_pred -------------------------------------------------------HHHHhcCCCccCceEEEecC-----
Confidence 334432 12223 445566
Q ss_pred cccCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCc-cCHHHHHHHHHHhhcCCHHHHHHhhHHH
Q 012719 340 NIRGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIV-LDEESLAHLGEIARDTSLRHAVQLLYPA 415 (458)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~-i~~~~l~~i~~~~~~g~~r~a~~ll~~a 415 (458)
+.|..+++.++. |+..+ .+++++.++..+|++......+.. ..+-.++.+++.....+......+++.|
T Consensus 386 -------N~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 386 -------NRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred -------CCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 778899999998 99766 999999999999999998876664 4456677788877456778888899999
Q ss_pred HHHHhhhC-CCCccHHHHHHHHHh
Q 012719 416 SVVAKMNG-RDSICKADVEEVKAL 438 (458)
Q Consensus 416 ~~~a~~~~-~~~it~~~v~~~~~~ 438 (458)
...+.... ...||.+|+..+..-
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 459 ALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHhccCCccHHHHHHHHHh
Confidence 88888777 567999999998874
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=3e-21 Score=187.50 Aligned_cols=112 Identities=24% Similarity=0.276 Sum_probs=81.9
Q ss_pred eEEEEcccchh---------cHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcc-cccCCCC
Q 012719 300 GVLFIDEVHML---------DMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI-IRTQIYG 369 (458)
Q Consensus 300 ~Vl~IDE~~~l---------~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~-i~~~~~~ 369 (458)
|||||||++.+ ..++++.|++.||+....++|++++... ++.....+.|+|+|||.. +.|++|+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~------~~~~~~~~np~L~sR~~~~i~F~~~t 197 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKD------RMDKFYESNPGLSSRIANHVDFPDYT 197 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH------HHHHHHhcCHHHHHhCCceEEcCCcC
Confidence 55555555554 4568899999999887765444442211 011122446899999975 5999999
Q ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhc-------CCHHHHHHhhHHHHH
Q 012719 370 PAEMIQILAIRAQVEEIVLDEESLAHLGEIARD-------TSLRHAVQLLYPASV 417 (458)
Q Consensus 370 ~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~-------g~~r~a~~ll~~a~~ 417 (458)
.+|+.+|+...+++.+..+++++...+.+...+ |+.|.+.++++.+..
T Consensus 198 ~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 198 PEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999988887775311 678999999876654
No 79
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.87 E-value=5.3e-21 Score=195.94 Aligned_cols=122 Identities=27% Similarity=0.308 Sum_probs=101.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAI 379 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 379 (458)
+|+||||+|+++...++.|++.+|+... ++|.+|.. +....++++++|||..+.|.+++.+++..+++.
T Consensus 94 ~vL~IDEi~~l~~~~q~~LL~~le~~~i-ilI~att~----------n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~ 162 (413)
T PRK13342 94 TILFIDEIHRFNKAQQDALLPHVEDGTI-TLIGATTE----------NPSFEVNPALLSRAQVFELKPLSEEDIEQLLKR 162 (413)
T ss_pred eEEEEechhhhCHHHHHHHHHHhhcCcE-EEEEeCCC----------ChhhhccHHHhccceeeEeCCCCHHHHHHHHHH
Confidence 8999999999999999999999997432 33334321 334578899999999999999999999999998
Q ss_pred HHHhc--CC-ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 380 RAQVE--EI-VLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 380 ~~~~~--~~-~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
.+... ++ .+++++++.|++.+ .|++|.++++|+.+... ...||.+++..+++.
T Consensus 163 ~l~~~~~~~i~i~~~al~~l~~~s-~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 163 ALEDKERGLVELDDEALDALARLA-NGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHhhcCCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 77653 44 89999999999999 99999999999977654 356999999988764
No 80
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.87 E-value=1.3e-20 Score=191.27 Aligned_cols=236 Identities=21% Similarity=0.245 Sum_probs=176.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 32 NGNAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 32 ~~~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
...|..+|++|.|.++.++.+...+... .-|..+++++||+||||||||++|+++|+.++ .+|+.+++++
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~~i~v~~~~ 200 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVGSE 200 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CCEEEeehHH
Confidence 3456789999999999999998777432 23456678999999999999999999999998 6799999999
Q ss_pred ccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHH
Q 012719 104 VYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDA 182 (458)
Q Consensus 104 ~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 182 (458)
+...|.|..+ .+++.|..+.. ..|++||+||+|++++++.+....+ ...+..
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~-~~~~~~----------------------- 253 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSG-DREVQR----------------------- 253 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCc-cHHHHH-----------------------
Confidence 9999999887 58889998875 4599999999999987765431110 000000
Q ss_pred HhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHH
Q 012719 183 LIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSL 262 (458)
Q Consensus 183 ~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l 262 (458)
T Consensus 254 -------------------------------------------------------------------------------- 253 (389)
T PRK03992 254 -------------------------------------------------------------------------------- 253 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccc
Q 012719 263 MGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGIC 339 (458)
Q Consensus 263 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~ 339 (458)
....|+..++.. ..+ .+|.+|
T Consensus 254 ---------------------------------------------------~l~~lL~~ld~~~~~~~v~VI~aT----- 277 (389)
T PRK03992 254 ---------------------------------------------------TLMQLLAEMDGFDPRGNVKIIAAT----- 277 (389)
T ss_pred ---------------------------------------------------HHHHHHHhccccCCCCCEEEEEec-----
Confidence 011122222211 123 466677
Q ss_pred cccCCCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHH
Q 012719 340 NIRGTDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPAS 416 (458)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~ 416 (458)
+.+..+++++++ ||.. +.|++|+.++..+|++..++...+.-+ -.+..++..+...+.+....++..|.
T Consensus 278 -------n~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~-~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 278 -------NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD-VDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred -------CChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc-CCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 566788888885 7854 599999999999999988776554321 33677888874557888889999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHhhh
Q 012719 417 VVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 417 ~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
..|...+...|+.+|+..|+.-..
T Consensus 350 ~~a~~~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 350 MFAIRDDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh
Confidence 999888888899999999988543
No 81
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=1.5e-21 Score=213.45 Aligned_cols=203 Identities=23% Similarity=0.295 Sum_probs=156.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|..+|++++|++.+++.+...+.+. +.+..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~fi~v~~~~l~ 524 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANFIAVRGPEIL 524 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHh
Confidence 35678999999999999998877532 23556778999999999999999999999998 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCC-chhhHHHHHHhhccccccccccCChhHHHHH
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGG-YGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 183 (458)
++|+|+++ .++++|+.|.. ..||++|+||+|++++.++...... ..+.+++++..| +.+
T Consensus 525 ~~~vGese~~i~~~f~~A~~---~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~l----------------dg~ 585 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQ---AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEM----------------DGI 585 (733)
T ss_pred hcccCcHHHHHHHHHHHHHh---cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHh----------------hcc
Confidence 99999998 69999999986 4599999999999999886543222 345666666543 222
Q ss_pred hhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----H---hhHHHHhcCCCCh
Q 012719 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----L---HDLDAANARPQGG 256 (458)
Q Consensus 184 ~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l---~~l~~~~~~~~g~ 256 (458)
...+.++|.++||.+..++.+..+.+|||. .+++|.| +...|.++++... + -+++.++..++||
T Consensus 586 -----~~~~~v~vI~aTn~~~~ld~allRpgRfd~--~i~v~~P--d~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~ 656 (733)
T TIGR01243 586 -----QELSNVVVIAATNRPDILDPALLRPGRFDR--LILVPPP--DEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGY 656 (733)
T ss_pred -----cCCCCEEEEEeCCChhhCCHhhcCCCccce--EEEeCCc--CHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCC
Confidence 223345566777777777777777778876 5677777 5667888775432 1 2788999999997
Q ss_pred --hhHHHHHHhh
Q 012719 257 --QDILSLMGQM 266 (458)
Q Consensus 257 --adl~~l~~~~ 266 (458)
+|+..++...
T Consensus 657 sgadi~~~~~~A 668 (733)
T TIGR01243 657 TGADIEAVCREA 668 (733)
T ss_pred CHHHHHHHHHHH
Confidence 9998887654
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=99.86 E-value=2.1e-20 Score=195.18 Aligned_cols=118 Identities=21% Similarity=0.338 Sum_probs=100.4
Q ss_pred eEEEEcccchhcH----HHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCCh-hHhhhhcccccCCCCHHHHH
Q 012719 300 GVLFIDEVHMLDM----ECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPL-DLLDRLVIIRTQIYGPAEMI 374 (458)
Q Consensus 300 ~Vl~IDE~~~l~~----~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~-~l~sR~~~i~~~~~~~~e~~ 374 (458)
.|++|||++.++. ..++.|+++++....++++ ++ +++..+++ ++++||..+.|++++..++.
T Consensus 100 kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIl-i~------------n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~ 166 (482)
T PRK04195 100 KLILLDEVDGIHGNEDRGGARAILELIKKAKQPIIL-TA------------NDPYDPSLRELRNACLMIEFKRLSTRSIV 166 (482)
T ss_pred eEEEEecCcccccccchhHHHHHHHHHHcCCCCEEE-ec------------cCccccchhhHhccceEEEecCCCHHHHH
Confidence 8999999999976 6789999999987766544 56 44556666 89999999999999999999
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHH
Q 012719 375 QILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVK 436 (458)
Q Consensus 375 ~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~ 436 (458)
.+|+.++..+++.+++++++.|++.+ .|++|.+++.|+. ++ .+.+.|+.+++....
T Consensus 167 ~~L~~i~~~egi~i~~eaL~~Ia~~s-~GDlR~ain~Lq~---~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 167 PVLKRICRKEGIECDDEALKEIAERS-GGDLRSAINDLQA---IA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHH---Hh--cCCCCCcHHHHHHhh
Confidence 99999999999999999999999999 9999999999985 22 345668888886554
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.86 E-value=8.5e-21 Score=204.00 Aligned_cols=126 Identities=25% Similarity=0.219 Sum_probs=101.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAI 379 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 379 (458)
++|||||+|+++...++.|++.+|+.. -++|.+|.. +....++++++|||..+.|++++.+++..+++.
T Consensus 111 ~IL~IDEIh~Ln~~qQdaLL~~lE~g~-IiLI~aTTe----------np~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 111 TILFIDEVHRFNKAQQDALLPWVENGT-ITLIGATTE----------NPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred eEEEEeChhhCCHHHHHHHHHHhcCce-EEEEEecCC----------ChHhhhhhHhhccccceecCCCCHHHHHHHHHH
Confidence 799999999999999999999999743 133333321 334578899999999999999999999999999
Q ss_pred HHH-------hcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCC--CCccHHHHHHHHH
Q 012719 380 RAQ-------VEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGR--DSICKADVEEVKA 437 (458)
Q Consensus 380 ~~~-------~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~--~~it~~~v~~~~~ 437 (458)
.+. ..++.++++++++|+..+ .||+|.++++|+.+...+...+. ..||.+.+++++.
T Consensus 180 ~l~~~~~~~g~~~v~I~deaL~~La~~s-~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 180 ALQDKERGYGDRKVDLEPEAEKHLVDVA-NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 887 567899999999999999 99999999999987754432222 2378888877654
No 84
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.86 E-value=2.5e-20 Score=189.60 Aligned_cols=232 Identities=22% Similarity=0.248 Sum_probs=174.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|..+|+||.|+++.++.+...+.+. .-+..+++++||+||||||||++|+++|..++ .+|+.+.++++.
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~fi~V~~seL~ 254 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATFLRVVGSELI 254 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCEEEEecchhh
Confidence 46688999999999999998877643 22456778999999999999999999999998 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
..+.|.++ .++..|+.|.. ..|+++|+||+|+++.++.....++. +.+..
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~-~e~qr------------------------- 305 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGE-KEIQR------------------------- 305 (438)
T ss_pred hhhcchHHHHHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCccc-HHHHH-------------------------
Confidence 99999988 58999998875 45999999999999876643211110 00000
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 306 -------------------------------------------------------------------------------- 305 (438)
T PTZ00361 306 -------------------------------------------------------------------------------- 305 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~ 341 (458)
....|+..|+.. ... .+|++|
T Consensus 306 -------------------------------------------------~ll~LL~~Ldg~~~~~~V~VI~AT------- 329 (438)
T PTZ00361 306 -------------------------------------------------TMLELLNQLDGFDSRGDVKVIMAT------- 329 (438)
T ss_pred -------------------------------------------------HHHHHHHHHhhhcccCCeEEEEec-------
Confidence 011122222211 123 566677
Q ss_pred cCCCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHhhcCCHHHHHHhhHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEE-SLAHLGEIARDTSLRHAVQLLYPASV 417 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~-~l~~i~~~~~~g~~r~a~~ll~~a~~ 417 (458)
+.+..+++.+++ |+.. +.|++|+.++..+|++....+..+ +++ -++.++..+...+......++..|..
T Consensus 330 -----Nr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 330 -----NRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELSGADIKAICTEAGL 402 (438)
T ss_pred -----CChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 667888888874 8854 499999999999999988766544 332 35666766645678888889999999
Q ss_pred HHhhhCCCCccHHHHHHHHHhh
Q 012719 418 VAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 418 ~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.|...++..||.+|+..|+.-.
T Consensus 403 ~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 403 LALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHhcCCccCHHHHHHHHHHH
Confidence 9999999999999999998844
No 85
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.86 E-value=5.7e-20 Score=182.23 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=107.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||++.++.+.++.|++.++.++.. .+|+++ +.+..+.+++.+||..+.|.+++.+++.++++
T Consensus 104 ~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~------------~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~ 171 (319)
T PRK00440 104 KIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSC------------NYSSKIIDPIQSRCAVFRFSPLKKEAVAERLR 171 (319)
T ss_pred eEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEe------------CCccccchhHHHHhheeeeCCCCHHHHHHHHH
Confidence 89999999999999999999999987665 677777 55678888999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.++.+.++.+++++++.+++.+ +|++|.+++.|+.+... ...||.++|..++.
T Consensus 172 ~~~~~~~~~i~~~al~~l~~~~-~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 172 YIAENEGIEITDDALEAIYYVS-EGDMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 9999999999999999999999 99999999999966543 24699999988765
No 86
>CHL00176 ftsH cell division protein; Validated
Probab=99.86 E-value=2.3e-20 Score=198.32 Aligned_cols=234 Identities=24% Similarity=0.288 Sum_probs=179.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHhc-------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 33 GNAVPLAAGFVGQVEAREAAGLVVDMIRQK-------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 33 ~~~~~~l~~liG~~~~~~~l~~l~~~~~~~-------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
..+..+|+|++|.+++++.+..++.+++.. ...++++||+||||||||++|+++|.+++ +||+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeeeccHHHHH
Confidence 345678999999999999999988776543 33468999999999999999999999998 889999999998
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
..+.+... .++..|+.|.. ..||++|+||+|+++..++....+. ..
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~-~~----------------------------- 300 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGG-ND----------------------------- 300 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCC-cH-----------------------------
Confidence 88888766 68999999875 5599999999999986654320000 00
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 301 -------------------------------------------------------------------------------- 300 (638)
T CHL00176 301 -------------------------------------------------------------------------------- 300 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccC--CC-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSL--SP-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~ 341 (458)
-.....+.|+..|+... .. ++|.+|
T Consensus 301 ---------------------------------------------e~~~~L~~LL~~~dg~~~~~~ViVIaaT------- 328 (638)
T CHL00176 301 ---------------------------------------------EREQTLNQLLTEMDGFKGNKGVIVIAAT------- 328 (638)
T ss_pred ---------------------------------------------HHHHHHHHHHhhhccccCCCCeeEEEec-------
Confidence 00123344555555432 23 566666
Q ss_pred cCCCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVV 418 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~ 418 (458)
+.+..+++++++ ||.. +.++.|+.+++.+|++..+++... .++..+..++..+...+.+.+.++++.|...
T Consensus 329 -----N~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~ 402 (638)
T CHL00176 329 -----NRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAIL 402 (638)
T ss_pred -----CchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 666788888885 6644 499999999999999998887443 3455678888888334889999999998888
Q ss_pred HhhhCCCCccHHHHHHHHHhh
Q 012719 419 AKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 419 a~~~~~~~it~~~v~~~~~~~ 439 (458)
|...+...||.++++.|+.-.
T Consensus 403 a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 403 TARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHhCCCCcCHHHHHHHHHHH
Confidence 888888889999999998754
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=2.1e-20 Score=181.69 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=85.0
Q ss_pred eEEEEcccchh---------cHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc-ccccCCCC
Q 012719 300 GVLFIDEVHML---------DMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV-IIRTQIYG 369 (458)
Q Consensus 300 ~Vl~IDE~~~l---------~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~ 369 (458)
|||||||++.| +.++++.|++.|++....+++++++... .+.....+.|+|+|||. .+.|++|+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~------~~~~~~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD------RMDSFFESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH------HHHHHHhhCHHHHhhCCcEEEeCCcC
Confidence 67777777765 4568899999999887664444442210 01112345789999996 45999999
Q ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHHhh-------cCCHHHHHHhhHHHHHH
Q 012719 370 PAEMIQILAIRAQVEEIVLDEESLAHLGEIAR-------DTSLRHAVQLLYPASVV 418 (458)
Q Consensus 370 ~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~-------~g~~r~a~~ll~~a~~~ 418 (458)
.+|+..|++..+++.+..++++++..+..+.. -||.|.+.++++.+...
T Consensus 197 ~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 197 EAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887631 27899999999877643
No 88
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.85 E-value=3.3e-20 Score=194.91 Aligned_cols=125 Identities=31% Similarity=0.305 Sum_probs=111.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC----------------------------CC-eEEEecCCccccccCCCCCCCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL----------------------------SP-IVIFATNRGICNIRGTDMNSPH 350 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~----------------------------~~-i~il~tn~~~~~~~~~~~~~~~ 350 (458)
|+|||||++.|++..|+.|+++||+.. .+ .+|.+|+ ++|.
T Consensus 177 G~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt-----------~~p~ 245 (531)
T TIGR02902 177 GVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATT-----------RNPE 245 (531)
T ss_pred cEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEec-----------CCcc
Confidence 999999999999999999999998731 11 3444553 6788
Q ss_pred CCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHH
Q 012719 351 GIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKA 430 (458)
Q Consensus 351 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~ 430 (458)
.++|+++|||..+.|++++.+++.++++..+++.++.+++++++.|..++ . +.|.+.++++.|..+|...++..|+.+
T Consensus 246 ~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~-~-n~Rel~nll~~Aa~~A~~~~~~~It~~ 323 (531)
T TIGR02902 246 EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA-S-NGREAVNIVQLAAGIALGEGRKRILAE 323 (531)
T ss_pred cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh-h-hHHHHHHHHHHHHHHHhhCCCcEEcHH
Confidence 99999999999999999999999999999999999999999999999888 3 889999999999999988788889999
Q ss_pred HHHHHHH
Q 012719 431 DVEEVKA 437 (458)
Q Consensus 431 ~v~~~~~ 437 (458)
||+.++.
T Consensus 324 dI~~vl~ 330 (531)
T TIGR02902 324 DIEWVAE 330 (531)
T ss_pred HHHHHhC
Confidence 9999976
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=7.3e-20 Score=183.15 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=88.5
Q ss_pred ccccceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHH
Q 012719 295 AELVPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEM 373 (458)
Q Consensus 295 ~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 373 (458)
.+..+.|++|||+|.|+++++|+|++++|+++.. ++|++| ..+..++++++|||+.+.|.+++.+++
T Consensus 138 ~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t------------~~~~~llpti~SRc~~i~l~~l~~~~i 205 (365)
T PRK07471 138 AEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVS------------HAPARLLPTIRSRCRKLRLRPLAPEDV 205 (365)
T ss_pred ccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEE------------CCchhchHHhhccceEEECCCCCHHHH
Confidence 3344599999999999999999999999999866 788888 777889999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 374 IQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 374 ~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
.++|... ....+++.+..++.++ +|+++.++.+++
T Consensus 206 ~~~L~~~----~~~~~~~~~~~l~~~s-~Gsp~~Al~ll~ 240 (365)
T PRK07471 206 IDALAAA----GPDLPDDPRAALAALA-EGSVGRALRLAG 240 (365)
T ss_pred HHHHHHh----cccCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 9999875 3445666668889999 999999988875
No 90
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.85 E-value=1.3e-20 Score=183.23 Aligned_cols=171 Identities=10% Similarity=0.049 Sum_probs=125.0
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhcc--ccCCceEEEccc
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLR--IKENKEVYEGEV 138 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~--~~~~~ii~iDE~ 138 (458)
+..+|++++||||||||||++|+++|++++ ++|+.++++++.++|+|+.+ .+++.|+.|.... ..+||+|||||+
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg--~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMG--IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcC--CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 456679999999999999999999999999 67999999999999999999 6999999998642 457999999999
Q ss_pred cccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh---h----ccccCCeEEEeccCcccccCCcccc
Q 012719 139 TELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK---E----KVAVGDVIYIEANSGAVKRVGRSDA 211 (458)
Q Consensus 139 d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~v~i~~t~~~~~~~gr~~~ 211 (458)
|+++++++.+......+.+...|+.+ +|.... . .......+.|.+|+|.+..+.....
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl---------------~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNI---------------ADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHH---------------hcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 99999987543333345553333332 121100 0 0112344667788889988888888
Q ss_pred ccccccccccccccCCCcchHHHHHHHhhcC------HhhHHHHhcCCCC
Q 012719 212 FATEFDLEAEEYVPLPKGEVHKKKEIVQDVT------LHDLDAANARPQG 255 (458)
Q Consensus 212 ~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~------l~~l~~~~~~~~g 255 (458)
+.+|||.. +..| +...|.+|++.+. ..++..++....|
T Consensus 287 RpGRfDk~----i~lP--d~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 287 RDGRMEKF----YWAP--TREDRIGVVHGIFRDDGVSREDVVKLVDTFPG 330 (413)
T ss_pred CCCCCCce----eCCC--CHHHHHHHHHHHhccCCCCHHHHHHHHHcCCC
Confidence 88899773 3455 4556888776532 3366666666665
No 91
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=7.7e-20 Score=181.00 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=87.4
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++||++++|+.++.|+|||+|||||.. ++|+.| .+++.|+|+++|||+.+.|++++.+++.+.|
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t------------~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L 176 (334)
T PRK07993 109 AKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLAC------------REPARLLATLRSRCRLHYLAPPPEQYALTWL 176 (334)
T ss_pred ceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEE------------CChhhChHHHHhccccccCCCCCHHHHHHHH
Confidence 399999999999999999999999999988 888899 8899999999999999999999999999998
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
... ..++++.+..++.++ +|++..|+.+++
T Consensus 177 ~~~-----~~~~~~~a~~~~~la-~G~~~~Al~l~~ 206 (334)
T PRK07993 177 SRE-----VTMSQDALLAALRLS-AGAPGAALALLQ 206 (334)
T ss_pred HHc-----cCCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 753 347777788889999 999998887764
No 92
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.9e-20 Score=186.31 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=161.8
Q ss_pred CCccccccchHHHHHHHHHHHH-------HHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchh
Q 012719 36 VPLAAGFVGQVEAREAAGLVVD-------MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSE 108 (458)
Q Consensus 36 ~~~l~~liG~~~~~~~l~~l~~-------~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~ 108 (458)
...|+|+.|.+.+++.+.+.+- .+..-..+.+++|+.||||+|||+|++|+|.+.+ .-|+.++++.+.+.|
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~--atff~iSassLtsK~ 226 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG--ATFFNISASSLTSKY 226 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc--ceEeeccHHHhhhhc
Confidence 4569999999999999887763 2333455678999999999999999999999999 559999999999999
Q ss_pred hhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhc
Q 012719 109 VKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEK 187 (458)
Q Consensus 109 ~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
+|+.+ .++.+|+.|+..+ |+|+|+||+|.++.+|.++..+...|...++++++. +. .
T Consensus 227 ~Ge~eK~vralf~vAr~~q---PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~---~~----------------~ 284 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQ---PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD---GK----------------N 284 (428)
T ss_pred cChHHHHHHHHHHHHHhcC---CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc---cc----------------c
Confidence 99998 5999999999755 999999999999999966655555677777776641 11 1
Q ss_pred cccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhh--------cCHhhHHHHhcCCCCh--h
Q 012719 188 VAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQD--------VTLHDLDAANARPQGG--Q 257 (458)
Q Consensus 188 ~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~--------~~l~~l~~~~~~~~g~--a 257 (458)
....|.|++.++||.++..+.+.+ +||.. .+|+|.| +...|..++.. ++..+++.++..|+|| .
T Consensus 285 s~~~drvlvigaTN~P~e~Dea~~--Rrf~k--r~yiplP--d~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgs 358 (428)
T KOG0740|consen 285 SAPDDRVLVIGATNRPWELDEAAR--RRFVK--RLYIPLP--DYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGS 358 (428)
T ss_pred CCCCCeEEEEecCCCchHHHHHHH--HHhhc--eeeecCC--CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccc
Confidence 235678888888888887765543 36644 5677777 55667666543 3456999999999998 9
Q ss_pred hHHHHHHhhccchh
Q 012719 258 DILSLMGQMMKPRK 271 (458)
Q Consensus 258 dl~~l~~~~~~~~~ 271 (458)
|+.++|.....+..
T Consensus 359 di~~l~kea~~~p~ 372 (428)
T KOG0740|consen 359 DITALCKEAAMGPL 372 (428)
T ss_pred cHHHHHHHhhcCch
Confidence 99999877665543
No 93
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.83 E-value=4.8e-19 Score=178.77 Aligned_cols=234 Identities=23% Similarity=0.264 Sum_probs=171.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 32 NGNAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 32 ~~~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
...|..+|+++.|++++++.+...+... .-|..+++++||+||||||||++|+++|+.++ .+|+.+.+++
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~~~v~~~~ 191 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVGSE 191 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCEEecchHH
Confidence 3457889999999999999998777533 12445678999999999999999999999998 5699999999
Q ss_pred ccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHH
Q 012719 104 VYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDA 182 (458)
Q Consensus 104 ~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 182 (458)
+...+.+... .++..|+.+.. ..|+++|+||+|.+...+....... ...+.
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~-~~~~~------------------------ 243 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSG-DREVQ------------------------ 243 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCc-cHHHH------------------------
Confidence 9888898877 58888887764 4599999999999886654321000 00000
Q ss_pred HhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHH
Q 012719 183 LIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSL 262 (458)
Q Consensus 183 ~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l 262 (458)
T Consensus 244 -------------------------------------------------------------------------------- 243 (364)
T TIGR01242 244 -------------------------------------------------------------------------------- 243 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccc
Q 012719 263 MGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGIC 339 (458)
Q Consensus 263 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~ 339 (458)
..+..++..++.. ..+ .+|++|
T Consensus 244 --------------------------------------------------~~l~~ll~~ld~~~~~~~v~vI~tt----- 268 (364)
T TIGR01242 244 --------------------------------------------------RTLMQLLAELDGFDPRGNVKVIAAT----- 268 (364)
T ss_pred --------------------------------------------------HHHHHHHHHhhCCCCCCCEEEEEec-----
Confidence 0111222223322 223 466666
Q ss_pred cccCCCCCCCCCCChhHhh--hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHH
Q 012719 340 NIRGTDMNSPHGIPLDLLD--RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPAS 416 (458)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~ 416 (458)
+.+..+++++++ ||. .+.++.|+.++..+|++.......+.- +--+..++..+...+.+....++..|.
T Consensus 269 -------n~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 269 -------NRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred -------CChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 566788888875 775 459999999999999998776544321 123677888884456788888999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHh
Q 012719 417 VVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 417 ~~a~~~~~~~it~~~v~~~~~~ 438 (458)
..|...++..|+.+|+..|+.-
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHhCCCccCHHHHHHHHHH
Confidence 9998889899999999998864
No 94
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=2.4e-19 Score=177.33 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=85.0
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++||+++.|+.+++|+|++++|+||.. ++|++| +++..++|+++|||+.+.|.+++++++.+.+
T Consensus 94 ~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~------------~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 94 KKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLC------------ENLEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEe------------CChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 399999999999999999999999999987 788888 6788999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll 412 (458)
..... .+++++++.++..+ .|++..|..++
T Consensus 162 ~~~~~----~~~~~~~~~l~~~~-~g~~~~a~~~~ 191 (313)
T PRK05564 162 SYKYN----DIKEEEKKSAIAFS-DGIPGKVEKFI 191 (313)
T ss_pred HHHhc----CCCHHHHHHHHHHc-CCCHHHHHHHh
Confidence 76542 57888899999998 88787766543
No 95
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=4.3e-19 Score=175.28 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=86.2
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
.++|++||++++|+.+++|+|||+||+|+.. ++|++| +++..|+|+++|||+.+.|.+++.+++.+.
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t------------~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLIS------------HQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEE------------CChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 3499999999999999999999999999887 888888 888999999999999999999999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
|.... ...+++.+..++.++ +|++..|+.+++
T Consensus 174 L~~~~----~~~~~~~~~~~l~la-~Gsp~~A~~l~~ 205 (328)
T PRK05707 174 LQQAL----PESDERERIELLTLA-GGSPLRALQLHE 205 (328)
T ss_pred HHHhc----ccCChHHHHHHHHHc-CCCHHHHHHHHC
Confidence 98653 134666777788889 999988877654
No 96
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=4.8e-19 Score=175.87 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=81.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++|||++.|+.+++|+||++||+||.. ++|++| +++..|+|+++|||+.+.|.+++.+++.++|
T Consensus 111 ~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t------------~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 111 KKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLT------------ENKHQILPTILSRCQVVEFRPLPPESLIQRL 178 (329)
T ss_pred ceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEe------------CChHhCcHHHHhhceeeeCCCCCHHHHHHHH
Confidence 399999999999999999999999999988 788888 7888999999999999999999999998888
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
+.. + ++++....++..+ |++..|..+++
T Consensus 179 ~~~----g--i~~~~~~~l~~~~--g~~~~A~~l~~ 206 (329)
T PRK08058 179 QEE----G--ISESLATLLAGLT--NSVEEALALSE 206 (329)
T ss_pred HHc----C--CChHHHHHHHHHc--CCHHHHHHHhc
Confidence 642 4 6666666776665 78888877754
No 97
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=6.4e-19 Score=172.82 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=83.3
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
.+|++||++++|+.+++|+|||+|||||.. ++|+.| +.+..|+|+++|||+.+.|.+++.+++.+.|
T Consensus 108 ~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t------------~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 108 NKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQA------------DLSAALLPTIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE------------CChHhCchHHHhhceEEeCCCCCHHHHHHHH
Confidence 399999999999999999999999999988 888888 8899999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
.... ..+++.+..++.++ .|++..|+.++.
T Consensus 176 ~~~~-----~~~~~~~~~~~~l~-~g~p~~A~~~~~ 205 (325)
T PRK06871 176 QAQS-----SAEISEILTALRIN-YGRPLLALTFLE 205 (325)
T ss_pred HHHh-----ccChHHHHHHHHHc-CCCHHHHHHHhh
Confidence 8753 23444466667788 888877776653
No 98
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.2e-19 Score=177.45 Aligned_cols=207 Identities=18% Similarity=0.195 Sum_probs=140.8
Q ss_pred cCCCCCCccccc--cchHHHHHHHHHHHHHHHh-----------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEE
Q 012719 31 ANGNAVPLAAGF--VGQVEAREAAGLVVDMIRQ-----------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFC 97 (458)
Q Consensus 31 ~~~~~~~~l~~l--iG~~~~~~~l~~l~~~~~~-----------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i 97 (458)
+..+|...|+++ .|.+.--..+ +.+++.+ |...-+++|||||||||||.+||.+.+.|+.+-| -
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~I--FRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP-K 286 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDI--FRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP-K 286 (744)
T ss_pred cccCCCCChhhcccccchHHHHHH--HHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCC-c
Confidence 345666666654 5666443322 2233322 2222368999999999999999999999987644 4
Q ss_pred EecCCcccchhhhhhH-HHHHHHHHHHhccc-----cCCceEEEccccccCccccCCc--cCCchhhHHHHHHhhccccc
Q 012719 98 PMVGSEVYSSEVKKTE-ILMENFRRAIGLRI-----KENKEVYEGEVTELSPEETESI--TGGYGKSISHVIIGLKTVKG 169 (458)
Q Consensus 98 ~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~-----~~~~ii~iDE~d~l~~~~~~~~--~~~~~~~~~~~l~~l~~~~~ 169 (458)
.++++++..+|+|++| +++.+|+.|.+... ..-.||++||+|++|..|++.. .+.-+.+++|+|..+ ||
T Consensus 287 IVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKm---DG 363 (744)
T KOG0741|consen 287 IVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKM---DG 363 (744)
T ss_pred ccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhc---cc
Confidence 4789999999999998 79999999964322 2368999999999999998762 333467788887664 22
Q ss_pred cccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH------
Q 012719 170 TKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL------ 243 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l------ 243 (458)
+. +..++++| +.||+....+.++-+.+||.-..++..|...+ |.+|++..|-
T Consensus 364 Ve-----------------qLNNILVI-GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~g----RlQIl~IHT~rMre~~ 421 (744)
T KOG0741|consen 364 VE-----------------QLNNILVI-GMTNRKDLIDEALLRPGRLEVQMEISLPDEKG----RLQILKIHTKRMRENN 421 (744)
T ss_pred HH-----------------hhhcEEEE-eccCchhhHHHHhcCCCceEEEEEEeCCCccC----ceEEEEhhhhhhhhcC
Confidence 22 23355555 56666666666666777776655555554444 6555544331
Q ss_pred ----h-hHHHHhcCCCCh--hhHHHHHHh
Q 012719 244 ----H-DLDAANARPQGG--QDILSLMGQ 265 (458)
Q Consensus 244 ----~-~l~~~~~~~~g~--adl~~l~~~ 265 (458)
+ |+..++++|..| |++..++..
T Consensus 422 ~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 422 KLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred CCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 1 777888888876 888877654
No 99
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.6e-20 Score=176.97 Aligned_cols=203 Identities=20% Similarity=0.219 Sum_probs=150.1
Q ss_pred CCCCccccccchHHHHHHHHHHHH-------HHHhc--ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVD-------MIRQK--KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~-------~~~~~--~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
....+|+|+.|.+.++.++++++- ++..+ ..|++++|+|||||||||++|+++|++.+ .+|+.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--a~fInv~~s~l 163 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--ANFINVSVSNL 163 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--CCcceeecccc
Confidence 345789999999999999998873 22122 23568999999999999999999999999 56999999999
Q ss_pred cchhhhhhHH-HHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHH
Q 012719 105 YSSEVKKTEI-LMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183 (458)
Q Consensus 105 ~~~~~~~~~~-l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 183 (458)
.++|.|+.+. +..+|-.|..+ +||+||+||+|++...|..+..+.+...-.+|+..+ |++
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl---~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~W----------------DGl 224 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKL---QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALW----------------DGL 224 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhc---CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHh----------------ccc
Confidence 9999999984 77888888754 499999999999998885555555566666666543 222
Q ss_pred hhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhcCCCCh
Q 012719 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANARPQGG 256 (458)
Q Consensus 184 ~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~~~~g~ 256 (458)
. ......|.|.+.||++..++.+. .||+ ...+.|+.|+ ..+|..|++.+- ++ |++.++..|.||
T Consensus 225 ~---s~~~~rVlVlgATNRP~DlDeAi--iRR~--p~rf~V~lP~--~~qR~kILkviLk~e~~e~~vD~~~iA~~t~Gy 295 (386)
T KOG0737|consen 225 S---SKDSERVLVLGATNRPFDLDEAI--IRRL--PRRFHVGLPD--AEQRRKILKVILKKEKLEDDVDLDEIAQMTEGY 295 (386)
T ss_pred c---CCCCceEEEEeCCCCCccHHHHH--HHhC--cceeeeCCCc--hhhHHHHHHHHhcccccCcccCHHHHHHhcCCC
Confidence 1 12333577777777776655332 2333 1245667774 566777776543 22 889999999998
Q ss_pred --hhHHHHHHhh
Q 012719 257 --QDILSLMGQM 266 (458)
Q Consensus 257 --adl~~l~~~~ 266 (458)
.|+..+|...
T Consensus 296 SGSDLkelC~~A 307 (386)
T KOG0737|consen 296 SGSDLKELCRLA 307 (386)
T ss_pred cHHHHHHHHHHH
Confidence 9999888664
No 100
>PRK06893 DNA replication initiation factor; Validated
Probab=99.82 E-value=1.6e-18 Score=163.69 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=96.9
Q ss_pred eEEEEcccchhc--HHHHHHHHHHhhc---cCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCHH
Q 012719 300 GVLFIDEVHMLD--MECFSYLNRALES---SLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGPA 371 (458)
Q Consensus 300 ~Vl~IDE~~~l~--~~~~~~Ll~~lE~---~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~~ 371 (458)
.+|+|||++.+. .+.+..|+.++.. ....++++++|..+ .......+.++|||. .+.+++++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p--------~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP--------HALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh--------HHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 689999999874 3333344444432 22345666776432 222234489999996 6699999999
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 372 EMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 372 e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
++.++++..+...++.++++++++|++.+ .||+|.+.++++.....+...++ .||.+.|+++++
T Consensus 165 ~~~~iL~~~a~~~~l~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L~ 228 (229)
T PRK06893 165 QKIIVLQRNAYQRGIELSDEVANFLLKRL-DRDMHTLFDALDLLDKASLQAQR-KLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhc
Confidence 99999999999999999999999999999 99999999999987544443344 599999998875
No 101
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.82 E-value=4.4e-19 Score=164.11 Aligned_cols=107 Identities=25% Similarity=0.284 Sum_probs=100.5
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
.+|++|.|++.|+.++|.+|.++||.+... -+|+.+ +..+++.++++|||..++++.++++|+..++
T Consensus 128 fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~c------------ns~SriIepIrSRCl~iRvpaps~eeI~~vl 195 (351)
T KOG2035|consen 128 FKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVC------------NSTSRIIEPIRSRCLFIRVPAPSDEEITSVL 195 (351)
T ss_pred eEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEe------------cCcccchhHHhhheeEEeCCCCCHHHHHHHH
Confidence 499999999999999999999999999888 577788 6678999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVV 418 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~ 418 (458)
...++++++.++.+.+..|++.+ +|++|.|+-+|+.+...
T Consensus 196 ~~v~~kE~l~lp~~~l~rIa~kS-~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 196 SKVLKKEGLQLPKELLKRIAEKS-NRNLRRALLMLEAVRVN 235 (351)
T ss_pred HHHHHHhcccCcHHHHHHHHHHh-cccHHHHHHHHHHHHhc
Confidence 99999999999999999999999 99999999999977653
No 102
>PRK04132 replication factor C small subunit; Provisional
Probab=99.82 E-value=4.1e-19 Score=191.83 Aligned_cols=120 Identities=26% Similarity=0.315 Sum_probs=107.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|.|+.++|++|+++||+|+.. .+|++| +++..++++++|||+.+.|.+++.+++.++|+
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~------------N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC------------NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEe------------CChhhCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 89999999999999999999999999877 788888 77899999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++++++.++++++..|+..+ +||+|.|+++|+.+.... ..||.++|..+.+
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s-~GDlR~AIn~Lq~~~~~~-----~~It~~~V~~~~~ 752 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAALD-----DKITDENVFLVAS 752 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-----CCCCHHHHHHHhC
Confidence 9999999999999999999999 999999999999765432 3477777665443
No 103
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.81 E-value=2.9e-19 Score=184.20 Aligned_cols=208 Identities=19% Similarity=0.219 Sum_probs=142.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC--------ccEE
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSK--------VPFC 97 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~--------~p~i 97 (458)
.|..+|++|.|++..++.+...+... ..+..+++++|||||||||||++|+++|++++.. ..|+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 46778999999999999888776432 3356678999999999999999999999998543 3477
Q ss_pred EecCCcccchhhhhhH-HHHHHHHHHHhcc-ccCCceEEEccccccCccccCCccCCc-hhhHHHHHHhhcccccccccc
Q 012719 98 PMVGSEVYSSEVKKTE-ILMENFRRAIGLR-IKENKEVYEGEVTELSPEETESITGGY-GKSISHVIIGLKTVKGTKQLK 174 (458)
Q Consensus 98 ~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~-~~~~~ii~iDE~d~l~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~ 174 (458)
.+.++++.++|+|+++ .++.+|..+.... ...||++|+||+|+++++++....... .+.+.+++..|
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L---------- 325 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL---------- 325 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh----------
Confidence 8889999999999998 5899999887543 246999999999999988765422222 23444554332
Q ss_pred CChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHh--hHHHHhcC
Q 012719 175 LDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLH--DLDAANAR 252 (458)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~--~l~~~~~~ 252 (458)
|.+. ..+++++ .++||.+..++.+..+.+|||. .++++.| +...|++|+...... .++.....
T Consensus 326 ------Dgl~----~~~~ViV-I~ATN~~d~LDpALlRpGRfD~--~I~~~~P--d~e~r~~Il~~~l~~~l~l~~~l~~ 390 (512)
T TIGR03689 326 ------DGVE----SLDNVIV-IGASNREDMIDPAILRPGRLDV--KIRIERP--DAEAAADIFSKYLTDSLPLDADLAE 390 (512)
T ss_pred ------cccc----cCCceEE-EeccCChhhCCHhhcCccccce--EEEeCCC--CHHHHHHHHHHHhhccCCchHHHHH
Confidence 2221 1234444 4566677777777777778876 4566666 455677777543211 11111233
Q ss_pred CCCh--hhHHHHHHhh
Q 012719 253 PQGG--QDILSLMGQM 266 (458)
Q Consensus 253 ~~g~--adl~~l~~~~ 266 (458)
..|+ +++.+++..+
T Consensus 391 ~~g~~~a~~~al~~~a 406 (512)
T TIGR03689 391 FDGDREATAAALIQRA 406 (512)
T ss_pred hcCCCHHHHHHHHHHH
Confidence 4554 6666666554
No 104
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.81 E-value=3.1e-18 Score=169.74 Aligned_cols=116 Identities=22% Similarity=0.193 Sum_probs=94.1
Q ss_pred eEEEEcccchh-cHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 300 GVLFIDEVHML-DMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 300 ~Vl~IDE~~~l-~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
+|++|||++.+ ..+.++.|.+.+|+++.. .+|+++ +.+..++++++|||..+.|+.++.++...++
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~------------n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il 169 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA------------NNKNGIIEPLRSRCRVIDFGVPTKEEQIEMM 169 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc------------CChhhchHHHHhhceEEEeCCCCHHHHHHHH
Confidence 89999999999 677888999899998776 677777 5667899999999999999999988877554
Q ss_pred H-------HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 378 A-------IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 378 ~-------~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
+ ..+.++++.++++++..++..+ .|+.|.+++.++.... ...++.+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~al~~l~~~~-~~d~r~~l~~l~~~~~------~~~i~~~~l~~ 226 (316)
T PHA02544 170 KQMIVRCKGILEAEGVEVDMKVLAALVKKN-FPDFRRTINELQRYAS------TGKIDAGILSE 226 (316)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHc------cCCCCHHHHHH
Confidence 4 3455789999999999999999 8999999888884421 23466665544
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.81 E-value=9.9e-19 Score=165.65 Aligned_cols=128 Identities=23% Similarity=0.227 Sum_probs=99.4
Q ss_pred eEEEEcccchhcH------HHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCH
Q 012719 300 GVLFIDEVHMLDM------ECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~~------~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~ 370 (458)
.+|+|||++.++. ..++.++..+|..... +|++++..+ .....+.|.|+||| ..+.+.++++
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~-li~ts~~~p--------~~l~~~~~~L~SRl~~g~~~~l~~~~~ 169 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR-LLITGDRPP--------RQLNLGLPDLASRLDWGQIYKLQPLSD 169 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe-EEEeCCCCh--------HHcCcccHHHHHHHhCCceeeecCCCH
Confidence 6899999999853 2466667777644333 555664221 22233679999999 6779999999
Q ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 371 AEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+++.++++.++...++.++++++++|+..+ .||+|.+.++++.....+...+ ..||.+.+++++++
T Consensus 170 ~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~l~~~-~~it~~~~k~~l~~ 235 (235)
T PRK08084 170 EEKLQALQLRARLRGFELPEDVGRFLLKRL-DREMRTLFMTLDQLDRASITAQ-RKLTIPFVKEILKL 235 (235)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcC
Confidence 999999999899999999999999999999 9999999999998754443334 45999999998763
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=2e-17 Score=180.64 Aligned_cols=337 Identities=17% Similarity=0.253 Sum_probs=198.6
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC-C-------CccEEEecCCccc--c
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG-S-------KVPFCPMVGSEVY--S 106 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~-------~~p~i~l~~~~~~--~ 106 (458)
..+++++|+++....+ +..+.++.. .+++|+||||||||++|+++|+.+. . ...++.++.+.+. .
T Consensus 179 ~~l~~~igr~~ei~~~---~~~L~~~~~--~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~ 253 (731)
T TIGR02639 179 GKIDPLIGREDELERT---IQVLCRRKK--NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGT 253 (731)
T ss_pred CCCCcccCcHHHHHHH---HHHHhcCCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhc
Confidence 4689999999887743 344444433 4899999999999999999999871 1 2447777777666 4
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
++.|..+ .+++.|+.+.. ..++++|+||++.+++.+.... +. .... .+.+
T Consensus 254 ~~~g~~e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~--~~-~~~~-----------------------~~L~ 304 (731)
T TIGR02639 254 KYRGDFEERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSG--GS-MDAS-----------------------NLLK 304 (731)
T ss_pred cccchHHHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCC--cc-HHHH-----------------------HHHH
Confidence 6778877 69999988764 3489999999999987653221 10 0111 1222
Q ss_pred hccccCCeEEEeccCccc----ccCCccccccccccccccccccCCCcchHHHHHHHhh------------cCHhhHHHH
Q 012719 186 EKVAVGDVIYIEANSGAV----KRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQD------------VTLHDLDAA 249 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~----~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~------------~~l~~l~~~ 249 (458)
+.+..|.+.+|.+||..- ...+++ ..+||. .+.++.|+ ...+..+++. ++-..+..+
T Consensus 305 ~~l~~g~i~~IgaTt~~e~~~~~~~d~a--l~rRf~---~i~v~~p~--~~~~~~il~~~~~~~e~~~~v~i~~~al~~~ 377 (731)
T TIGR02639 305 PALSSGKLRCIGSTTYEEYKNHFEKDRA--LSRRFQ---KIDVGEPS--IEETVKILKGLKEKYEEFHHVKYSDEALEAA 377 (731)
T ss_pred HHHhCCCeEEEEecCHHHHHHHhhhhHH--HHHhCc---eEEeCCCC--HHHHHHHHHHHHHHHHhccCcccCHHHHHHH
Confidence 344678999999998532 222333 455774 35555554 3334444331 111122222
Q ss_pred hcCCCCh-----------------------------------hhHHHHHHhhccch--------hH---HH---------
Q 012719 250 NARPQGG-----------------------------------QDILSLMGQMMKPR--------KT---EI--------- 274 (458)
Q Consensus 250 ~~~~~g~-----------------------------------adl~~l~~~~~~~~--------~~---~i--------- 274 (458)
+..+..| .|+..++.....-. .. .+
T Consensus 378 ~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~ 457 (731)
T TIGR02639 378 VELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIF 457 (731)
T ss_pred HHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccee
Confidence 2221111 22222211110000 00 00
Q ss_pred -----hHHHHHH----------------------------------HHHHHH---------HHHh---------------
Q 012719 275 -----TDKLRQE----------------------------------INKVVN---------RFID--------------- 291 (458)
Q Consensus 275 -----~~~~~~~----------------------------------i~~~~~---------~~~~--------------- 291 (458)
...+.+. +.+.+. +|.+
T Consensus 458 GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyv 537 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYV 537 (731)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCc
Confidence 0000000 000000 0000
Q ss_pred ---------hccccccceEEEEcccchhcHHHHHHHHHHhhcc------------CCCeEEEecCCccccccCCCC----
Q 012719 292 ---------EGAAELVPGVLFIDEVHMLDMECFSYLNRALESS------------LSPIVIFATNRGICNIRGTDM---- 346 (458)
Q Consensus 292 ---------~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~------------~~~i~il~tn~~~~~~~~~~~---- 346 (458)
+.-....++|+++||++.+++++++.|+++|++. ...++|++||.+...+....+
T Consensus 538 g~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~ 617 (731)
T TIGR02639 538 GFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGS 617 (731)
T ss_pred ccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcch
Confidence 0000123479999999999999999999999974 223788888876432211000
Q ss_pred C---------CCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHH-------hc--CCccCHHHHHHHHHHh--hcCCH
Q 012719 347 N---------SPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQ-------VE--EIVLDEESLAHLGEIA--RDTSL 405 (458)
Q Consensus 347 ~---------~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~-------~~--~~~i~~~~l~~i~~~~--~~g~~ 405 (458)
. -...++|+|++|+. ++.|.|++.+++.+|+....+ .. .+.++++++++|++.+ .+.+.
T Consensus 618 ~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~Ga 697 (731)
T TIGR02639 618 ENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGA 697 (731)
T ss_pred hhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCc
Confidence 0 01347889999996 559999999999999987654 22 3679999999999864 23456
Q ss_pred HHHHHhhHH
Q 012719 406 RHAVQLLYP 414 (458)
Q Consensus 406 r~a~~ll~~ 414 (458)
|.+..+++.
T Consensus 698 R~l~r~i~~ 706 (731)
T TIGR02639 698 RPLARVIQE 706 (731)
T ss_pred hHHHHHHHH
Confidence 666666553
No 107
>PRK06620 hypothetical protein; Validated
Probab=99.79 E-value=8.9e-18 Score=156.49 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=96.7
Q ss_pred eEEEEcccchhcH-HHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCHHHHHH
Q 012719 300 GVLFIDEVHMLDM-ECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGPAEMIQ 375 (458)
Q Consensus 300 ~Vl~IDE~~~l~~-~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~~e~~~ 375 (458)
.+|+|||+|.+.. +.+..++...|... .+++++...+ ....+ |.|+||+. .+.+.+++++++..
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~--~ilits~~~p---------~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~ 154 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQK--YLLLTSSDKS---------RNFTL-PDLSSRIKSVLSILLNSPDDELIKI 154 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCC--EEEEEcCCCc---------cccch-HHHHHHHhCCceEeeCCCCHHHHHH
Confidence 6899999998864 45555555555543 3454554321 11235 88999997 77999999999999
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHH
Q 012719 376 ILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVK 436 (458)
Q Consensus 376 il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~ 436 (458)
++++.++..++.++++++++|++.+ .||+|.+.++|+.....+...++ .||.+.+++++
T Consensus 155 ~l~k~~~~~~l~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~~~~~~-~it~~~~~~~l 213 (214)
T PRK06620 155 LIFKHFSISSVTISRQIIDFLLVNL-PREYSKIIEILENINYFALISKR-KITISLVKEVL 213 (214)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHh
Confidence 9999999899999999999999999 99999999999987766655554 59999998875
No 108
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.79 E-value=6.3e-18 Score=166.86 Aligned_cols=137 Identities=21% Similarity=0.337 Sum_probs=109.0
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhcc-------------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc-c
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESS-------------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII-R 364 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~ 364 (458)
.|+||+||+++|++..|+.|+.+|++. +.++++++|.. .....+++.+++|+.+. .
T Consensus 145 ~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~n----------p~eg~l~~~LldRf~l~i~ 214 (350)
T CHL00081 145 RGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGN----------PEEGELRPQLLDRFGMHAE 214 (350)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccC----------cccCCCCHHHHHHhCceee
Confidence 499999999999999999999999862 33455555521 12346999999999765 7
Q ss_pred cCCCC-HHHHHHHHHHHH-----------------------------HhcCCccCHHHHHHHHHHhhc---CCHHHHHHh
Q 012719 365 TQIYG-PAEMIQILAIRA-----------------------------QVEEIVLDEESLAHLGEIARD---TSLRHAVQL 411 (458)
Q Consensus 365 ~~~~~-~~e~~~il~~~~-----------------------------~~~~~~i~~~~l~~i~~~~~~---g~~r~a~~l 411 (458)
+..++ .++..+|++... .-..+.++++.+++|++++.. -++|..+.+
T Consensus 215 l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l 294 (350)
T CHL00081 215 IRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVT 294 (350)
T ss_pred cCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHH
Confidence 77776 466666665431 123477999999999987633 379999999
Q ss_pred hHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHH
Q 012719 412 LYPASVVAKMNGRDSICKADVEEVKALYLDAKSS 445 (458)
Q Consensus 412 l~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~ 445 (458)
++.|.++|.+.|+..|+++||+.++.+.+.+|..
T Consensus 295 ~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 295 NRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999998763
No 109
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=5.9e-18 Score=165.81 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=83.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
.+|++||+++.|+.+++|+|||+||||+.. ++|+.+ +.+..|+|+++|||+.+.|.+++.++..+.|
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~------------~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L 181 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLIS------------AQPARLPATIRSRCQRLEFKLPPAHEALAWL 181 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEE------------CChhhCchHHHhhheEeeCCCcCHHHHHHHH
Confidence 499999999999999999999999999988 788888 7889999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll 412 (458)
... .++++.+..++.++ +|++..|..++
T Consensus 182 ~~~------~~~~~~a~~~~~l~-~G~p~~A~~~~ 209 (319)
T PRK08769 182 LAQ------GVSERAAQEALDAA-RGHPGLAAQWL 209 (319)
T ss_pred HHc------CCChHHHHHHHHHc-CCCHHHHHHHh
Confidence 743 35566666778888 89988877765
No 110
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.5e-19 Score=167.16 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=142.0
Q ss_pred CCccccccchHHHHHHHHHHHH-------HHHh-cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 36 VPLAAGFVGQVEAREAAGLVVD-------MIRQ-KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 36 ~~~l~~liG~~~~~~~l~~l~~-------~~~~-~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
+.+|+.+.|.-.+..++...+. .+.+ +..+|.++++|||||||||.+|+++|..++ +.|+.++.+++.++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg--~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG--VNFLKVVSSALVDK 205 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC--CceEEeeHhhhhhh
Confidence 4589999998888887766653 2233 677789999999999999999999999999 55999999999999
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
|+|+.+ .+++-|+.|.. ..||++|+||+|++.+.+... .....+.+...|..|-++ ++.+.
T Consensus 206 yiGEsaRlIRemf~yA~~---~~pciifmdeiDAigGRr~se-~Ts~dreiqrTLMeLlnq------------mdgfd-- 267 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSE-GTSSDREIQRTLMELLNQ------------MDGFD-- 267 (388)
T ss_pred hcccHHHHHHHHHHHHhh---hCceEEeehhhhhhccEEecc-ccchhHHHHHHHHHHHHh------------hccch--
Confidence 999998 59999999987 459999999999999988443 233467777777666332 33333
Q ss_pred ccccCCeEEEeccC------cccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH----h---hHHHHhcCC
Q 012719 187 KVAVGDVIYIEANS------GAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL----H---DLDAANARP 253 (458)
Q Consensus 187 ~~~~~~~v~i~~t~------~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l----~---~l~~~~~~~ 253 (458)
..+.+-.|.+++ +.+.|+||.++ .+.+|.| ....|..+++.... + +.+.+-+..
T Consensus 268 --~l~rVk~ImatNrpdtLdpaLlRpGRldr---------k~~iPlp--ne~~r~~I~Kih~~~i~~~Geid~eaivK~~ 334 (388)
T KOG0651|consen 268 --TLHRVKTIMATNRPDTLDPALLRPGRLDR---------KVEIPLP--NEQARLGILKIHVQPIDFHGEIDDEAILKLV 334 (388)
T ss_pred --hcccccEEEecCCccccchhhcCCccccc---------eeccCCc--chhhceeeEeeccccccccccccHHHHHHHH
Confidence 345566666665 45566666654 4555555 55667666544321 1 445555556
Q ss_pred CCh--hhHHHHHHh
Q 012719 254 QGG--QDILSLMGQ 265 (458)
Q Consensus 254 ~g~--adl~~l~~~ 265 (458)
+|+ +|++..+.+
T Consensus 335 d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 335 DGFNGADLRNVCTE 348 (388)
T ss_pred hccChHHHhhhccc
Confidence 664 776666544
No 111
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=7.2e-18 Score=165.02 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=81.7
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
..+|++||++++|+.+++|+|||++||||.. ++|+.| +++..|+|+++|||+.+.|++++.+++.+.
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t------------~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVT------------HNQKRLLPTIVSRCQQWVVTPPSTAQAMQW 175 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEE------------CChhhChHHHHhcceeEeCCCCCHHHHHHH
Confidence 3499999999999999999999999999988 888888 889999999999999999999999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
|... +++ ....++.++ +|++..|..+++
T Consensus 176 L~~~----~~~----~~~~~l~l~-~G~p~~A~~~~~ 203 (319)
T PRK06090 176 LKGQ----GIT----VPAYALKLN-MGSPLKTLAMMK 203 (319)
T ss_pred HHHc----CCc----hHHHHHHHc-CCCHHHHHHHhC
Confidence 8753 333 234567788 898888777764
No 112
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.78 E-value=4.4e-18 Score=169.20 Aligned_cols=336 Identities=18% Similarity=0.236 Sum_probs=187.2
Q ss_pred cccchHHHHHHHHHHHH-HHHhc--------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc-chhhh
Q 012719 41 GFVGQVEAREAAGLVVD-MIRQK--------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY-SSEVK 110 (458)
Q Consensus 41 ~liG~~~~~~~l~~l~~-~~~~~--------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~-~~~~~ 110 (458)
-|+||+++++++...+. .+++. ..+++++||+||||||||++|++||+.++ .||+.++.+.+. .+|+|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~--~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEeecceeecCCccc
Confidence 47999999998865553 22221 22358999999999999999999999998 889999999887 47888
Q ss_pred h-hH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhcccccc--c---cccCChhHHHHH
Q 012719 111 K-TE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGT--K---QLKLDPTIYDAL 183 (458)
Q Consensus 111 ~-~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~---~~~~~~~~~~~~ 183 (458)
. .+ .++..|..|... + +.+.+++.+.........+.+.+++-......+. . .-.....+.+.+
T Consensus 91 ~dvE~i~r~l~e~A~~~---------i-~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l 160 (441)
T TIGR00390 91 RDVESMVRDLTDAAVKL---------V-KEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKL 160 (441)
T ss_pred CCHHHHHHHHHHHHHHH---------H-HHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHH
Confidence 4 44 688888888641 2 3577777774332222334444443211000000 0 000001111111
Q ss_pred hhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCCh----hhH
Q 012719 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGG----QDI 259 (458)
Q Consensus 184 ~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~----adl 259 (458)
. -|..+ |.++.+.++.+.+. .+..+ ...|. .++
T Consensus 161 ~---------------------~g~ld------d~~iei~v~~~~~~------~~~~~----------~~~~~~~~~~~~ 197 (441)
T TIGR00390 161 R---------------------EGELD------DKEIEIDVSAKMPS------GIEIM----------APPGMEEMTMQL 197 (441)
T ss_pred h---------------------cCCcc------CcEEEEeecCCCCC------ccccC----------CCcchhHHHhhH
Confidence 1 11111 11111121110000 00000 00000 112
Q ss_pred HHHHHhhccchhH----HHhHHHHHHHHHHHHHHHhhcc------c-cccceEEEEcccchhcH------------HHHH
Q 012719 260 LSLMGQMMKPRKT----EITDKLRQEINKVVNRFIDEGA------A-ELVPGVLFIDEVHMLDM------------ECFS 316 (458)
Q Consensus 260 ~~l~~~~~~~~~~----~i~~~~~~~i~~~~~~~~~~~~------~-~~~~~Vl~IDE~~~l~~------------~~~~ 316 (458)
..++..++..... -+.+....-++....+.++... . ....||+||||+|.+.. .+|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~ 277 (441)
T TIGR00390 198 QSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQR 277 (441)
T ss_pred HHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhc
Confidence 2222222211100 1111111111111111111111 0 12349999999999852 3899
Q ss_pred HHHHHhhccC----------CCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc-ccCCCCHHHHHHHHHHH-----
Q 012719 317 YLNRALESSL----------SPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII-RTQIYGPAEMIQILAIR----- 380 (458)
Q Consensus 317 ~Ll~~lE~~~----------~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~~~~~~~~e~~~il~~~----- 380 (458)
.||+.+|... .++++++++- + +...|.+|.|+|..|+.++ .+.+++.+++.+||...
T Consensus 278 ~LLkilEGt~v~~k~~~v~T~~ILFI~~GA--F-----~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLi 350 (441)
T TIGR00390 278 DLLPIVEGSTVNTKYGMVKTDHILFIAAGA--F-----QLAKPSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLI 350 (441)
T ss_pred cccccccCceeeecceeEECCceeEEecCC--c-----CCCChhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHH
Confidence 9999999742 2333333311 0 2256788999999999887 99999999999999532
Q ss_pred ------HHhcC--CccCHHHHHHHHHHhh-------cCCHHHHHHhhHHHHHHHhhhCC------CCccHHHHHHHHHh
Q 012719 381 ------AQVEE--IVLDEESLAHLGEIAR-------DTSLRHAVQLLYPASVVAKMNGR------DSICKADVEEVKAL 438 (458)
Q Consensus 381 ------~~~~~--~~i~~~~l~~i~~~~~-------~g~~r~a~~ll~~a~~~a~~~~~------~~it~~~v~~~~~~ 438 (458)
++.+| +.+++++++.|++.|. +.+.|.+..+++....-+....- -.||.+.|+..++-
T Consensus 351 kQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~ 429 (441)
T TIGR00390 351 KQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLGA 429 (441)
T ss_pred HHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHH
Confidence 22334 5699999999999873 45688888888877654443322 15777777766653
No 113
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.4e-19 Score=189.05 Aligned_cols=205 Identities=22% Similarity=0.242 Sum_probs=155.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHH--------HHhcccCCceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecCC
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDM--------IRQKKMAGRALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVGS 102 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~--------~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~~ 102 (458)
.....|+++.|.+.++..+++++-. ..-+..|++++||+||||||||.+|+++|..+ +.++-|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 3457899999999999999887732 24467788999999999999999999999988 334678899999
Q ss_pred cccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHH
Q 012719 103 EVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYD 181 (458)
Q Consensus 103 ~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 181 (458)
+..+.|+|+.+ .++..|..|.. +.|+|+|+||+|-++|.|....--.-..+++.+|.- +|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k---~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaL----------------md 399 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQK---TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLAL----------------MD 399 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhc---cCceEEeccccccccccccchHHHhhhhHHHHHHHh----------------cc
Confidence 99999999999 59999999986 559999999999999999754322223455555433 44
Q ss_pred HHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC--------HhhHHHHhcCC
Q 012719 182 ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT--------LHDLDAANARP 253 (458)
Q Consensus 182 ~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~--------l~~l~~~~~~~ 253 (458)
++. ..|.+++|.+|+ ++.-++++.++.+|||. ..++|.| +...|..|+..-| ..-++.++..+
T Consensus 400 Gld----sRgqVvvigATn-Rpda~dpaLRRPgrfdr--ef~f~lp--~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t 470 (1080)
T KOG0732|consen 400 GLD----SRGQVVVIGATN-RPDAIDPALRRPGRFDR--EFYFPLP--DVDARAKILDIHTRKWEPPISRELLLWLAEET 470 (1080)
T ss_pred CCC----CCCceEEEcccC-CccccchhhcCCcccce--eEeeeCC--chHHHHHHHHHhccCCCCCCCHHHHHHHHHhc
Confidence 444 567777776654 55555555666666655 6777877 4555777665544 33678889999
Q ss_pred CCh--hhHHHHHHhh
Q 012719 254 QGG--QDILSLMGQM 266 (458)
Q Consensus 254 ~g~--adl~~l~~~~ 266 (458)
.|| +|+.++|..+
T Consensus 471 ~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 471 SGYGGADLKALCTEA 485 (1080)
T ss_pred cccchHHHHHHHHHH
Confidence 887 9999998654
No 114
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.78 E-value=8.7e-18 Score=153.93 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=82.3
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
+.|++|||+|.|++++++.|++.||+++.. ++|+.+ +++..+.++++|||..+.|.+++.+++.++|
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~------------~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILIT------------PSPEKLLPTIRSRCQVLPFPPLSEEALLQWL 164 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE------------CChHhChHHHHhhcEEeeCCCCCHHHHHHHH
Confidence 389999999999999999999999998776 777777 5568999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHA 408 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a 408 (458)
... + +++++++.++..+ +|++|.|
T Consensus 165 ~~~----g--i~~~~~~~i~~~~-~g~~r~~ 188 (188)
T TIGR00678 165 IRQ----G--ISEEAAELLLALA-GGSPGAA 188 (188)
T ss_pred HHc----C--CCHHHHHHHHHHc-CCCcccC
Confidence 876 3 8899999999999 9999864
No 115
>PRK08727 hypothetical protein; Validated
Probab=99.77 E-value=2.3e-17 Score=156.12 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=99.3
Q ss_pred eEEEEcccchhc--HHHHHHHHHHhhccC--CCeEEEecCCccccccCCCCCCCCCCChhHhhh---hcccccCCCCHHH
Q 012719 300 GVLFIDEVHMLD--MECFSYLNRALESSL--SPIVIFATNRGICNIRGTDMNSPHGIPLDLLDR---LVIIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~--~~~~~~Ll~~lE~~~--~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR---~~~i~~~~~~~~e 372 (458)
-+|+|||++.+. ++.+..|+.+++.-. ..-+|+++|..+ .....+.++++|| |..+.+++++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p--------~~l~~~~~dL~SRl~~~~~~~l~~~~~e~ 166 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMP--------DGLALVLPDLRSRLAQCIRIGLPVLDDVA 166 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCCh--------hhhhhhhHHHHHHHhcCceEEecCCCHHH
Confidence 689999999885 344455555555321 223566675322 2233457999999 6677999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+..+++.++...++.++++++++|++.+ .|++|.++++|+.+...+...++ .||.+.+++++.
T Consensus 167 ~~~iL~~~a~~~~l~l~~e~~~~La~~~-~rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 167 RAAVLRERAQRRGLALDEAAIDWLLTHG-ERELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHh
Confidence 9999999999999999999999999999 89999999999988766655555 599999998765
No 116
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.77 E-value=5.1e-17 Score=164.27 Aligned_cols=131 Identities=23% Similarity=0.229 Sum_probs=100.9
Q ss_pred eEEEEcccchhc---HHHHHHHHHH--hhccC-CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--ccccCCCCH
Q 012719 300 GVLFIDEVHMLD---MECFSYLNRA--LESSL-SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~---~~~~~~Ll~~--lE~~~-~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~~~~~~ 370 (458)
.|++|||+|.+. .+....|+++ .++.+ .+ .+|+++|.. .....+.+.+.|||. .+.|+||+.
T Consensus 131 ~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~---------~~~~~l~~~~~s~~~~~~i~f~p~~~ 201 (365)
T TIGR02928 131 LIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL---------KFRENLDPRVKSSLCEEEIIFPPYDA 201 (365)
T ss_pred EEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc---------chHhhcCHHHhccCCcceeeeCCCCH
Confidence 789999999993 3456667776 33333 34 456666432 223467888999994 569999999
Q ss_pred HHHHHHHHHHHHh--cCCccCHHHHHHHHHHhh--cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 371 AEMIQILAIRAQV--EEIVLDEESLAHLGEIAR--DTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 371 ~e~~~il~~~~~~--~~~~i~~~~l~~i~~~~~--~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+|+.+|++.+++. .+..++++++++++..+. .|++|.++.+++.|...|...+.+.||.+||+.|+...
T Consensus 202 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 202 EELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999863 344589999988877652 49999999999999999988888899999999987744
No 117
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=2e-17 Score=163.48 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=82.1
Q ss_pred cccccceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHH
Q 012719 294 AAELVPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAE 372 (458)
Q Consensus 294 ~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e 372 (458)
..+...+|++||++++|+.++.|+|||++|||+.. ++|+.| +++..|+|+++|||+.+.|++++.++
T Consensus 128 ~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t------------~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 128 THRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVS------------ARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred CccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEE------------CChhhCcHHHHhcCEEEEecCCCHHH
Confidence 33444599999999999999999999999999988 888888 88999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhh
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll 412 (458)
+.+.|... + +++. +.++.++ +|++..|+.++
T Consensus 196 ~~~~L~~~----~--~~~~--~~~l~~~-~Gsp~~Al~~~ 226 (342)
T PRK06964 196 AAAWLAAQ----G--VADA--DALLAEA-GGAPLAALALA 226 (342)
T ss_pred HHHHHHHc----C--CChH--HHHHHHc-CCCHHHHHHHH
Confidence 99999764 2 3332 2346677 88888777665
No 118
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.77 E-value=1.2e-17 Score=187.37 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHH--HHHHHHHHhhcCCHHHHHHhhHHHHHHHhh
Q 012719 347 NSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEE--SLAHLGEIARDTSLRHAVQLLYPASVVAKM 421 (458)
Q Consensus 347 ~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~--~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~ 421 (458)
+.|..|+|+|++ |+... .++.++..+..+++.......++.+.++ .++.++..+...+.++..+++.-|..+|..
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 778999999997 88654 8888887777777765444445555543 267788888555799999999999999999
Q ss_pred hCCCCccHHHHHHHHH
Q 012719 422 NGRDSICKADVEEVKA 437 (458)
Q Consensus 422 ~~~~~it~~~v~~~~~ 437 (458)
.++..|+.++++.|+.
T Consensus 1860 q~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1860 QKKSIIDTNTIRSALH 1875 (2281)
T ss_pred cCCCccCHHHHHHHHH
Confidence 9999999999999987
No 119
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.77 E-value=8.1e-17 Score=170.26 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=101.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc---CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc--cccCCCCHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS---LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI--IRTQIYGPAEM 373 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~--i~~~~~~~~e~ 373 (458)
.||+|||+|.|....++.|+.+++.+ ... ++|..+|. +..+..|.|.++|||.. +.|+||+.+++
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd---------lDLperLdPRLRSRLg~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT---------MDLPERLIPRCRSRLAFGRLVFSPYKGDEI 941 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc---------hhcchhhhhhhhhccccccccCCCCCHHHH
Confidence 58999999999866666666666543 333 44455542 24566788899999964 79999999999
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhh--cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 374 IQILAIRAQVEEIVLDEESLAHLGEIAR--DTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 374 ~~il~~~~~~~~~~i~~~~l~~i~~~~~--~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
.+||+.++......+++++++++++.+. .||+|.|+.+|+.|...+ +...|+.+||+.|..-..
T Consensus 942 ~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 942 EKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHH
Confidence 9999999987666799999999998432 499999999999998764 445799999999987443
No 120
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.76 E-value=3.1e-17 Score=161.76 Aligned_cols=136 Identities=18% Similarity=0.306 Sum_probs=105.5
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhcc-------------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc-c
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESS-------------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII-R 364 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~ 364 (458)
.|+||+||+++++++.++.|+.+|++. +.+++++++.. .....+++++++||... .
T Consensus 129 ~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~N----------P~e~~l~~aLldRF~~~v~ 198 (334)
T PRK13407 129 RGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGN----------PEEGELRPQLLDRFGLSVE 198 (334)
T ss_pred CCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCC----------cccCCCCHHHHhhcceEEE
Confidence 389999999999999999999999864 23455555521 12345899999999654 7
Q ss_pred cCCCCH-HHHHHHHHHHHH-----------------------------hcCCccCHHHHHHHHHHhhc---CCHHHHHHh
Q 012719 365 TQIYGP-AEMIQILAIRAQ-----------------------------VEEIVLDEESLAHLGEIARD---TSLRHAVQL 411 (458)
Q Consensus 365 ~~~~~~-~e~~~il~~~~~-----------------------------~~~~~i~~~~l~~i~~~~~~---g~~r~a~~l 411 (458)
+.+++. ++..+++..... -..+.++++.++++++++.. .++|..+.+
T Consensus 199 v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l 278 (334)
T PRK13407 199 VRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTL 278 (334)
T ss_pred cCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 776665 666666654321 12367899999999987533 479999999
Q ss_pred hHHHHHHHhhhCCCCccHHHHHHHHHhhhchHH
Q 012719 412 LYPASVVAKMNGRDSICKADVEEVKALYLDAKS 444 (458)
Q Consensus 412 l~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~ 444 (458)
++.|..+|.+.|+.+|+++||+.++.+.+..|.
T Consensus 279 ~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 279 LRAARALAAFEGAEAVGRSHLRSVATMALSHRL 311 (334)
T ss_pred HHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999988887764
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.76 E-value=8.1e-17 Score=152.01 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=103.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc---CCCeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS---LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGPAEM 373 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~ 373 (458)
.+++|||++.++...+..|+.+++.. ...+++++++.. .....+.++++||| ..+.++++++++.
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~---------~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~ 162 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAA---------PLALPLREDLRTRLGWGLVYELKPLSDADK 162 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCC---------HHhCCCCHHHHHHHhcCeEEEecCCCHHHH
Confidence 79999999999998888998888753 223466555321 11224668899998 4669999999999
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 374 IQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 374 ~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..++...+...++.++++++++|+... .||+|.+.++++....+|...++ .||...++++++
T Consensus 163 ~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~~~~~~-~i~~~~~~~~l~ 224 (227)
T PRK08903 163 IAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYSLEQKR-PVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHh
Confidence 999999999999999999999999988 99999999999988777766654 599999998875
No 122
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.76 E-value=4.1e-17 Score=175.26 Aligned_cols=233 Identities=22% Similarity=0.251 Sum_probs=175.6
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.....|+++.|.+..+..+..++.+... +...+++++|+||||||||++|+++|.+++ +||+.++++++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCEEEEehHHhHH
Confidence 3456799999999999999888876532 223357899999999999999999999998 7899999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
.+.+..+ .+++.|..+.. ..||++|+||+|+++..+.....++..
T Consensus 224 ~~~g~~~~~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~------------------------------- 269 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHD------------------------------- 269 (644)
T ss_pred hhhcccHHHHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCch-------------------------------
Confidence 8888877 68999998865 459999999999998766432100000
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHh
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQ 265 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~ 265 (458)
T Consensus 270 -------------------------------------------------------------------------------- 269 (644)
T PRK10733 270 -------------------------------------------------------------------------------- 269 (644)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCC--C-eEEEecCCcccccc
Q 012719 266 MMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLS--P-IVIFATNRGICNIR 342 (458)
Q Consensus 266 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~--~-i~il~tn~~~~~~~ 342 (458)
-.....|.|+..|+.... . ++|.+|
T Consensus 270 --------------------------------------------~~~~~ln~lL~~mdg~~~~~~vivIaaT-------- 297 (644)
T PRK10733 270 --------------------------------------------EREQTLNQMLVEMDGFEGNEGIIVIAAT-------- 297 (644)
T ss_pred --------------------------------------------HHHHHHHHHHHhhhcccCCCCeeEEEec--------
Confidence 001133444444543322 2 566666
Q ss_pred CCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 343 GTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+.|..|.+.+++ ||... .++.|+.++..+|++...+...+.-+- .+..+++.+...+.+...++++.|...|
T Consensus 298 ----N~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~-d~~~la~~t~G~sgadl~~l~~eAa~~a 372 (644)
T PRK10733 298 ----NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI-DAAIIARGTPGFSGADLANLVNEAALFA 372 (644)
T ss_pred ----CChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC-CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Confidence 678899999885 88544 999999999999999888765543221 2456777774457889999999999999
Q ss_pred hhhCCCCccHHHHHHHHHhh
Q 012719 420 KMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 420 ~~~~~~~it~~~v~~~~~~~ 439 (458)
...+...|+.++++.+....
T Consensus 373 ~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 373 ARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHcCCCcccHHHHHHHHHHH
Confidence 88888899999999987643
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=99.76 E-value=6.1e-17 Score=153.27 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=98.0
Q ss_pred eEEEEcccchhc--HHHHHHHHHHhhccCC--CeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCHHH
Q 012719 300 GVLFIDEVHMLD--MECFSYLNRALESSLS--PIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~--~~~~~~Ll~~lE~~~~--~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~~e 372 (458)
-+|+||+++.+. +..+..|+.++..... ..++++++..+ .......|.++||| ..+.+.++++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p--------~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP--------RELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH--------HHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 578999999874 3334445555543221 24666775432 22334468899999 566999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+..+++.++...++.++++++++|++.+ .+|+|.+.++++.....+...++ .||...++++++
T Consensus 171 ~~~il~~ka~~~~~~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~l~~~~-~it~~~~~~~L~ 233 (234)
T PRK05642 171 KLRALQLRASRRGLHLTDEVGHFILTRG-TRSMSALFDLLERLDQASLQAQR-KLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCC-cCCHHHHHHHhc
Confidence 9999998898889999999999999999 99999999999988765544444 499999998875
No 124
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.76 E-value=1.5e-16 Score=162.65 Aligned_cols=131 Identities=21% Similarity=0.185 Sum_probs=104.7
Q ss_pred eEEEEcccchhc----HHHHHHHHHHhhccCC-C-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--ccccCCCCHH
Q 012719 300 GVLFIDEVHMLD----MECFSYLNRALESSLS-P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRTQIYGPA 371 (458)
Q Consensus 300 ~Vl~IDE~~~l~----~~~~~~Ll~~lE~~~~-~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~~~~~~~ 371 (458)
.|++|||+|.+. .+....|++++++.+. + .+|+++|.. ..+..+.+.+.||+. .+.|++|+.+
T Consensus 140 ~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~---------~~~~~l~~~~~s~~~~~~i~f~py~~~ 210 (394)
T PRK00411 140 LIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL---------TFLYILDPRVKSVFRPEEIYFPPYTAD 210 (394)
T ss_pred EEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc---------chhhhcCHHHHhcCCcceeecCCCCHH
Confidence 789999999986 5677888888776554 4 455566432 333457788889983 5699999999
Q ss_pred HHHHHHHHHHHhc--CCccCHHHHHHHHHHhh--cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 372 EMIQILAIRAQVE--EIVLDEESLAHLGEIAR--DTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 372 e~~~il~~~~~~~--~~~i~~~~l~~i~~~~~--~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
++.+|++.+++.. ...+++++++.+++.+. .|++|.++.++..|+..|...+...||.+||..|+.-+
T Consensus 211 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 211 EIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999999988643 34689999999988763 38899999999999999988888899999999998855
No 125
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.76 E-value=2.5e-17 Score=146.99 Aligned_cols=61 Identities=28% Similarity=0.270 Sum_probs=50.4
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCC
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYG 369 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~ 369 (458)
..++|++|||++.|+.+++|+|||+||+|+.. ++|+.| +++..|+|+++|||+.+.|++++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t------------~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT------------NNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE------------S-GGGS-HHHHTTSEEEEE----
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE------------CChHHChHHHHhhceEEecCCCC
Confidence 34599999999999999999999999999988 888888 88999999999999999998875
No 126
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.76 E-value=2e-17 Score=171.46 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=99.7
Q ss_pred eEEEEcccchhcH--HHHHHHHHH----hhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCH
Q 012719 300 GVLFIDEVHMLDM--ECFSYLNRA----LESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~~--~~~~~Ll~~----lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~ 370 (458)
.+|+|||+|.+.. ..+..|+.+ .+.. . .+|+++|..+ .....+.+.++|||. .+.+.+|+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~-~iiits~~~p--------~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-K-QIVLTSDRPP--------KELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-C-cEEEECCCCH--------HHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 6899999998853 233444443 3332 2 3555665332 122336688999994 569999999
Q ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 371 AEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+++.+||+.+++..++.++++++++|++.+ .|++|.+.++|.....+|...++. ||.+.+++++.-.
T Consensus 283 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~R~l~~~l~~l~~~~~~~~~~-it~~~~~~~l~~~ 349 (450)
T PRK00149 283 ETRIAILKKKAEEEGIDLPDEVLEFIAKNI-TSNVRELEGALNRLIAYASLTGKP-ITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHcCc-CCCHHHHHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHh
Confidence 999999999999999999999999999999 999999999999998888777655 8999999888854
No 127
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.75 E-value=5.7e-17 Score=155.73 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=90.8
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHH
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQ 375 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 375 (458)
...+|++||+++.|+.+++|+|||++|+||.. ++|+.| +.+..++|+++|||+.+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~------------~~~~~ll~TI~SRcq~~~~~~~------- 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTS------------AKPQRLPPTIRSRSLSIHIPME------- 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEe------------CChhhCcHHHHhcceEEEccch-------
Confidence 33499999999999999999999999999988 888888 8899999999999999999886
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHHhhcCCHH--HHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHHHHHHH
Q 012719 376 ILAIRAQVEEIVLDEESLAHLGEIARDTSLR--HAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQE 451 (458)
Q Consensus 376 il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r--~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~~~~~~ 451 (458)
+...++++.+..++..+ +|++. .+..++....... .....+.+...+.+++.+.|++-+.+.
T Consensus 155 --------~~~~i~~~~~~~l~~~~-~g~~~~~~~~~~l~~~~~~~-----~~~~re~~~~~L~~ll~~~RD~l~~~~ 218 (290)
T PRK05917 155 --------EKTLVSKEDIAYLIGYA-QGKESVTEVGQIVKGSADTD-----KQVLRDKTKAMLEVLLQLFRDRFLLAL 218 (290)
T ss_pred --------hccCCCHHHHHHHHHHh-CCChhHHHHHHHHhcchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12257888888888888 88774 3333333211110 112256666677777777777655443
No 128
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.75 E-value=5.1e-17 Score=166.40 Aligned_cols=131 Identities=17% Similarity=0.215 Sum_probs=100.5
Q ss_pred eEEEEcccchhcH--HHHHHHHHHhhcc--CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCHHH
Q 012719 300 GVLFIDEVHMLDM--ECFSYLNRALESS--LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~--~~~~~Ll~~lE~~--~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~~e 372 (458)
.+|+|||++.+.. ..+..|+.+++.. ....+|+++|..+ .....+.+.++|||. .+.+++|+.++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p--------~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPP--------KELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCH--------HHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 6899999998753 2344444444332 1123555775433 233446788999994 46999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
+..||+..++..++.++++++++|++.. .+++|.+.+.|......|...++. ||.+.+++++...+
T Consensus 273 r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~r~l~~~l~~l~~~a~~~~~~-it~~~~~~~L~~~~ 338 (405)
T TIGR00362 273 RLAILQKKAEEEGLELPDEVLEFIAKNI-RSNVRELEGALNRLLAYASLTGKP-ITLELAKEALKDLL 338 (405)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999999988888766654 88888888877543
No 129
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.8e-18 Score=170.11 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=106.7
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhcc-------------CCC-eEEEecCCccccccCCC-----------CCCCCC
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESS-------------LSP-IVIFATNRGICNIRGTD-----------MNSPHG 351 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~-i~il~tn~~~~~~~~~~-----------~~~~~~ 351 (458)
++.||||+||+-.....+.+.|...||+. +.. .+++++|+|+|...+.+ ..+..+
T Consensus 282 AH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~k 361 (490)
T COG0606 282 AHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNK 361 (490)
T ss_pred ecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHH
Confidence 44599999999999999999999999974 223 68899999999887764 335567
Q ss_pred CChhHhhhhccc-ccCCCCHHHH-------------H-------HHHHHHHHhc--CCccCHHHHHHHHHHhhc------
Q 012719 352 IPLDLLDRLVII-RTQIYGPAEM-------------I-------QILAIRAQVE--EIVLDEESLAHLGEIARD------ 402 (458)
Q Consensus 352 l~~~l~sR~~~i-~~~~~~~~e~-------------~-------~il~~~~~~~--~~~i~~~~l~~i~~~~~~------ 402 (458)
|+.+|++|+... ..+.++..|+ + ++...+..+. +..++.++++..+.+...
T Consensus 362 lSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~ 441 (490)
T COG0606 362 LSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLK 441 (490)
T ss_pred hhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHH
Confidence 888999999755 7766653322 2 2222233343 556777777776554311
Q ss_pred -------CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 403 -------TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 403 -------g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
-+.|....+|..++++|++.|...|...|+.+|+++
T Consensus 442 ~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 442 AALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred HHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 267888899999999999999999999999999874
No 130
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-15 Score=156.36 Aligned_cols=357 Identities=18% Similarity=0.224 Sum_probs=224.5
Q ss_pred hhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC--ccEE
Q 012719 20 AHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSK--VPFC 97 (458)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~--~p~i 97 (458)
.+.++|--+.+....+.+ .|++-...+++... +..-+......++|++||+|||||.|++++++++..+ .++.
T Consensus 390 ~~~g~K~~~~~l~~~~~e--~d~i~~~s~kke~~---n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~ 464 (952)
T KOG0735|consen 390 VLAGIKENSPDLVMSPFE--HDFIQVPSYKKENA---NQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVE 464 (952)
T ss_pred hhhcchhcCcccccCcCC--Cceeecchhhhhhh---hhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEE
Confidence 344555445444444433 67777777777443 2222333445789999999999999999999998544 3467
Q ss_pred EecCCcccchhhhhhHH-HHHHHHHHHhccccCCceEEEccccccCccccC-Cc-cCCchhhHHHHHHhhcccccccccc
Q 012719 98 PMVGSEVYSSEVKKTEI-LMENFRRAIGLRIKENKEVYEGEVTELSPEETE-SI-TGGYGKSISHVIIGLKTVKGTKQLK 174 (458)
Q Consensus 98 ~l~~~~~~~~~~~~~~~-l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~-~~-~~~~~~~~~~~l~~l~~~~~~~~~~ 174 (458)
.++++.+-.....+... +...|..+.. ++|++|++|++|.|++.... ++ .+.+......++..+
T Consensus 465 ~v~Cs~l~~~~~e~iQk~l~~vfse~~~---~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqv---------- 531 (952)
T KOG0735|consen 465 IVSCSTLDGSSLEKIQKFLNNVFSEALW---YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQV---------- 531 (952)
T ss_pred EEechhccchhHHHHHHHHHHHHHHHHh---hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHH----------
Confidence 77888888777777764 8888888875 66999999999999983322 22 122223333333222
Q ss_pred CChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhc--------CHhhH
Q 012719 175 LDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDV--------TLHDL 246 (458)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~--------~l~~l 246 (458)
+ +.-...+..+-+.++.....-+....--...| ......|.++...|.+|+..+ +..++
T Consensus 532 -----i----~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~F----q~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dL 598 (952)
T KOG0735|consen 532 -----I----KIYLKRNRKIAVIATGQELQTLNPLLVSPLLF----QIVIALPAPAVTRRKEILTTIFSKNLSDITMDDL 598 (952)
T ss_pred -----H----HHHHccCcEEEEEEechhhhhcChhhcCccce----EEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHH
Confidence 2 22334556667777775555544444434455 344445555778888877653 34588
Q ss_pred HHHhcCCCCh--hhHHHHHHhhccchhH--------HH---------------------------------------hHH
Q 012719 247 DAANARPQGG--QDILSLMGQMMKPRKT--------EI---------------------------------------TDK 277 (458)
Q Consensus 247 ~~~~~~~~g~--adl~~l~~~~~~~~~~--------~i---------------------------------------~~~ 277 (458)
+.++..|+|| .|+..++..++-.... .+ ...
T Consensus 599 d~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~ 678 (952)
T KOG0735|consen 599 DFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKV 678 (952)
T ss_pred HHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHH
Confidence 8899999999 8887665443211110 00 000
Q ss_pred HHHHHH---------------------------------------------------HHHHHHHhhcc----------cc
Q 012719 278 LRQEIN---------------------------------------------------KVVNRFIDEGA----------AE 296 (458)
Q Consensus 278 ~~~~i~---------------------------------------------------~~~~~~~~~~~----------~~ 296 (458)
+++.|. +.+++|+.... ..
T Consensus 679 l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 679 LEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQS 758 (952)
T ss_pred HHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhc
Confidence 111111 55566655322 24
Q ss_pred ccceEEEEcccchhc-----------HHHHHHHHHHhhccCC--CeEEEecCCccccccCCCCCCCCCCChhHhh--hhc
Q 012719 297 LVPGVLFIDEVHMLD-----------MECFSYLNRALESSLS--PIVIFATNRGICNIRGTDMNSPHGIPLDLLD--RLV 361 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~-----------~~~~~~Ll~~lE~~~~--~i~il~tn~~~~~~~~~~~~~~~~l~~~l~s--R~~ 361 (458)
+.+.|||+||++.+. ..++|-||.-|+.-.. .++|+++. ..|.-|.|+|++ |+.
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaT-----------sRpdliDpALLRpGRlD 827 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAAT-----------SRPDLIDPALLRPGRLD 827 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEec-----------CCccccCHhhcCCCccc
Confidence 677899999999985 4589999999986432 35555552 778888888873 554
Q ss_pred cc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 362 II-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 362 ~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
.. ..+.+++.+..+|++......-.. ++-.++.++......+..++..+|.-|...|
T Consensus 828 ~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~a 885 (952)
T KOG0735|consen 828 KLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAA 885 (952)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHH
Confidence 44 788899999999999775533322 2334677887773334555666665555443
No 131
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.74 E-value=4e-17 Score=162.14 Aligned_cols=97 Identities=24% Similarity=0.249 Sum_probs=81.1
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
..+|++|||++.|+.+++|+|+++||+|+.. .+|++| +++..+.++++|||+.+.|.+++..
T Consensus 109 ~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~------------n~~~~il~tI~SRc~~i~f~~~~~~----- 171 (325)
T COG0470 109 GYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT------------NDPSKILPTIRSRCQRIRFKPPSRL----- 171 (325)
T ss_pred CceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc------------CChhhccchhhhcceeeecCCchHH-----
Confidence 3499999999999999999999999999988 788888 7889999999999999999983333
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHH
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVV 418 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~ 418 (458)
..++..+ ++++..++..+ .|++|.+++.++.+...
T Consensus 172 -~~i~~~e-----~~~l~~i~~~~-~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 172 -EAIAWLE-----DQGLEEIAAVA-EGDARKAINPLQALAAL 206 (325)
T ss_pred -HHHHHhh-----ccchhHHHHHH-HHHHHcCCCHHHHHHHh
Confidence 3333332 77889999998 89999999988866554
No 132
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.74 E-value=1.9e-16 Score=169.03 Aligned_cols=126 Identities=26% Similarity=0.255 Sum_probs=102.6
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccC----------------------------CCeEEE-ecCCccccccCCCCCCC
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSL----------------------------SPIVIF-ATNRGICNIRGTDMNSP 349 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~----------------------------~~i~il-~tn~~~~~~~~~~~~~~ 349 (458)
.|+|||||++.|++..++.|++.|++.. ..++++ +|+ +++
T Consensus 266 gGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt-----------~~~ 334 (615)
T TIGR02903 266 GGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT-----------RDP 334 (615)
T ss_pred CCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc-----------ccc
Confidence 3899999999999999999999998642 112222 232 567
Q ss_pred CCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhh-------
Q 012719 350 HGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMN------- 422 (458)
Q Consensus 350 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~------- 422 (458)
..++++|+|||..+.|++++.+++..|++..+...++.+++++++.|+.++ .+.|.+++.|..+..++...
T Consensus 335 ~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~ 412 (615)
T TIGR02903 335 EEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKE 412 (615)
T ss_pred cccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 788999999999999999999999999999999888899999999999987 36699999998776554211
Q ss_pred -CCCCccHHHHHHHHH
Q 012719 423 -GRDSICKADVEEVKA 437 (458)
Q Consensus 423 -~~~~it~~~v~~~~~ 437 (458)
+...|+.++|+++++
T Consensus 413 ~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 413 NDKVTITQDDVYEVIQ 428 (615)
T ss_pred CCCeeECHHHHHHHhC
Confidence 223699999999887
No 133
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.73 E-value=1.9e-16 Score=149.19 Aligned_cols=127 Identities=18% Similarity=0.114 Sum_probs=98.0
Q ss_pred eEEEEcccchhcHH--HHHHHHHHhhcc--CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCHHH
Q 012719 300 GVLFIDEVHMLDME--CFSYLNRALESS--LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~--~~~~Ll~~lE~~--~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~~e 372 (458)
++++|||++.++.. .++.|..+++.. ....+|++++... .......+.+.+|+. .+.+++++.++
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~--------~~~~~~~~~L~~r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP--------AQLPLRLPDLRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh--------HHCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence 79999999999863 377777766542 1124555664221 111122278999984 56999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHH
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVK 436 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~ 436 (458)
+..+++..+.+.++.++++++++|+... .|++|.+.++++.+...+...++ .||.+.|++++
T Consensus 164 ~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 164 KIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 9999999888889999999999999988 99999999999998887766554 59999998865
No 134
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.73 E-value=7.5e-16 Score=170.28 Aligned_cols=132 Identities=19% Similarity=0.166 Sum_probs=94.9
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC--------CccEEEecCCccc--c
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS--------KVPFCPMVGSEVY--S 106 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~--------~~p~i~l~~~~~~--~ 106 (458)
..++.++|+++....+..++ .+. ..++++|+||||||||++|++||..+.. ..+++.++.+.+. .
T Consensus 176 ~~~~~~igr~~ei~~~~~~L---~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~ 250 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQIL---GRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGT 250 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHH---ccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccC
Confidence 35789999998877554333 333 2358999999999999999999998731 2468888887776 4
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
+|.|+.+ .++.+++.+.. ..++|+||||++.+++.....+.. . ...+.+
T Consensus 251 ~~~ge~e~rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~----~-----------------------~a~lLk 300 (821)
T CHL00095 251 KYRGEFEERLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAI----D-----------------------AANILK 300 (821)
T ss_pred CCccHHHHHHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcc----c-----------------------HHHHhH
Confidence 6778777 68999988864 348999999999999765432111 1 122233
Q ss_pred hccccCCeEEEeccCccc
Q 012719 186 EKVAVGDVIYIEANSGAV 203 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~ 203 (458)
+.+..|++.+|.+||...
T Consensus 301 p~l~rg~l~~IgaTt~~e 318 (821)
T CHL00095 301 PALARGELQCIGATTLDE 318 (821)
T ss_pred HHHhCCCcEEEEeCCHHH
Confidence 455688999999999654
No 135
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.72 E-value=8.1e-16 Score=153.26 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=95.0
Q ss_pred eEEEEcccchhc------------HHHHHHHHHHhhccC----------CCeEEEecCCccccccCCCCCCCCCCChhHh
Q 012719 300 GVLFIDEVHMLD------------MECFSYLNRALESSL----------SPIVIFATNRGICNIRGTDMNSPHGIPLDLL 357 (458)
Q Consensus 300 ~Vl~IDE~~~l~------------~~~~~~Ll~~lE~~~----------~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~ 357 (458)
||+||||+|.+. ..+|+.||+.+|... .++++++++- + +...|.+|.|+|.
T Consensus 251 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GA--F-----~~~kp~DlIPEl~ 323 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGA--F-----HVSKPSDLIPELQ 323 (443)
T ss_pred CEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCC--c-----CCCChhhccHHHh
Confidence 999999999985 338999999999742 2334434411 0 2356788999999
Q ss_pred hhhccc-ccCCCCHHHHHHHHHH----H-------HHhcC--CccCHHHHHHHHHHhh-------cCCHHHHHHhhHHHH
Q 012719 358 DRLVII-RTQIYGPAEMIQILAI----R-------AQVEE--IVLDEESLAHLGEIAR-------DTSLRHAVQLLYPAS 416 (458)
Q Consensus 358 sR~~~i-~~~~~~~~e~~~il~~----~-------~~~~~--~~i~~~~l~~i~~~~~-------~g~~r~a~~ll~~a~ 416 (458)
.|+.++ .+.+++.+++.+||.. . ++.+| +.+++++++.||+.|. +.+.|.+..+++...
T Consensus 324 GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 324 GRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred CccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999888 9999999999999953 1 22334 4699999999999874 346888888888776
Q ss_pred HHHhhhCC------CCccHHHHHHHHH
Q 012719 417 VVAKMNGR------DSICKADVEEVKA 437 (458)
Q Consensus 417 ~~a~~~~~------~~it~~~v~~~~~ 437 (458)
.-.....- -.||.+.|...++
T Consensus 404 ~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 404 EDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred HHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 54442221 2577777776655
No 136
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.72 E-value=4.2e-16 Score=154.04 Aligned_cols=137 Identities=21% Similarity=0.347 Sum_probs=108.2
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhcc-------------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc-c
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESS-------------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII-R 364 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~ 364 (458)
.|+||+||+++|++..|+.|+.+|++. +.+++++++.. .....+++++++||.+. .
T Consensus 132 ~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~n----------p~eg~l~~~LldRf~l~i~ 201 (337)
T TIGR02030 132 RGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGN----------PEEGELRPQLLDRFGLHAE 201 (337)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccc----------cccCCCCHHHHhhcceEEE
Confidence 499999999999999999999999864 23455555521 12346999999999765 7
Q ss_pred cCCCCH-HHHHHHHHHHHH-----------------------------hcCCccCHHHHHHHHHHhhc---CCHHHHHHh
Q 012719 365 TQIYGP-AEMIQILAIRAQ-----------------------------VEEIVLDEESLAHLGEIARD---TSLRHAVQL 411 (458)
Q Consensus 365 ~~~~~~-~e~~~il~~~~~-----------------------------~~~~~i~~~~l~~i~~~~~~---g~~r~a~~l 411 (458)
+.++++ ++..+|++.... -..+.+++++++++++++.. .++|..+.+
T Consensus 202 l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l 281 (337)
T TIGR02030 202 IRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTL 281 (337)
T ss_pred CCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHH
Confidence 777765 666666655211 13467899999999987533 268999999
Q ss_pred hHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHH
Q 012719 412 LYPASVVAKMNGRDSICKADVEEVKALYLDAKSS 445 (458)
Q Consensus 412 l~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~ 445 (458)
++.|.++|.+.|+.+|+++||+.++.+.|.+|..
T Consensus 282 ~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 282 NRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLR 315 (337)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999764
No 137
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=161.91 Aligned_cols=130 Identities=13% Similarity=0.201 Sum_probs=97.6
Q ss_pred eEEEEcccchhcH--HHHHHHHHHhhcc--CCCeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCHHH
Q 012719 300 GVLFIDEVHMLDM--ECFSYLNRALESS--LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~--~~~~~Ll~~lE~~--~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~~e 372 (458)
.||+|||++.+.. ..+..|+.++... ....+|++++..+ .....+.+.++||| ..+.+.+++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p--------~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP--------QDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH--------HHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 7999999999853 3344444443211 1234666775432 23345778999999 455999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHH---HHHhhhCCCCccHHHHHHHHHhh
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPAS---VVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~---~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+..||+..++..++.++++++++|+... .+++|.+.+.|.... +++...+.. ||.+.+++++.-+
T Consensus 276 r~~iL~~k~~~~~~~l~~evl~~la~~~-~~dir~L~g~l~~l~~~~a~~~~~~~~-i~~~~~~~~l~~~ 343 (445)
T PRK12422 276 LRSFLERKAEALSIRIEETALDFLIEAL-SSNVKSLLHALTLLAKRVAYKKLSHQL-LYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHh
Confidence 9999999999999999999999999998 899999999999884 555555543 7888888777644
No 138
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=3.6e-16 Score=147.08 Aligned_cols=92 Identities=18% Similarity=0.162 Sum_probs=78.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCC----------
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIY---------- 368 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~---------- 368 (458)
+|++||++++|+.++.|+|||++||||.. ++|+.| .++..++|+++|||+.+.|+++
T Consensus 90 KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit------------~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~ 157 (261)
T PRK05818 90 KIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTT------------RNENNILNTILSRCVQYVVLSKEKKVPFKVES 157 (261)
T ss_pred EEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEE------------CChHhCchHhhhheeeeecCChhhhccccccc
Confidence 99999999999999999999999999988 888888 8899999999999999999888
Q ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 369 GPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 369 ~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
+++++.+.+... ..+++ .++..+ +|+...+..+++
T Consensus 158 ~~~~i~~~L~~~-----~~~d~----~i~~~a-~g~~~~a~~l~~ 192 (261)
T PRK05818 158 NDRYFQYILLSF-----YSVDE----QLQAYN-NGSFSKLKNIIE 192 (261)
T ss_pred ChHHHHHHHHHc-----cCccH----HHHHHc-CCCHHHHHHHHH
Confidence 666666666544 23444 566667 999999999888
No 139
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.72 E-value=5e-17 Score=153.68 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=99.3
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
.+.+++||+|.|+.++||+|.+..|.+... .|++.+ +.+..+.|+++|||..++|.+++..+...++
T Consensus 132 fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~------------n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~ 199 (360)
T KOG0990|consen 132 FKLVILDEADAMTRDAQNALRRVIEKYTANTRFATIS------------NPPQKIHPAQQSRCTRFRFAPLTMAQQTERQ 199 (360)
T ss_pred eeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEec------------cChhhcCchhhcccccCCCCCCChhhhhhHH
Confidence 389999999999999999999999998776 566667 7889999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
..+++.+...++++....++..+ .|++|.+++.|+.....-
T Consensus 200 shi~e~e~~~~~~~~~~a~~r~s-~gDmr~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 200 SHIRESEQKETNPEGYSALGRLS-VGDMRVALNYLQSILKKV 240 (360)
T ss_pred HHHHhcchhhcCHHHHHHHHHHh-HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999665543
No 140
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=4.7e-16 Score=162.37 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=99.6
Q ss_pred eEEEEcccchhcH------HHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhh--c-ccccCCCCH
Q 012719 300 GVLFIDEVHMLDM------ECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL--V-IIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~~------~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~--~-~i~~~~~~~ 370 (458)
.||+|||++.+.. +.++.++...+.. . -+|+++|..+ .....+.+.|+||+ . .+.+.+++.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g-k-~IIITSd~~P--------~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNAN-K-QIVLSSDRPP--------KQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcC-C-CEEEecCCCh--------HhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 7899999998842 2444444444332 2 3556786543 33346778899999 3 449999999
Q ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 371 AEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
+.+..||+..++..++.++++++++|+... .+++|.+..+|.....++...++. ||.+.+++++.-++
T Consensus 449 EtR~aIL~kka~~r~l~l~~eVi~yLa~r~-~rnvR~LegaL~rL~a~a~~~~~~-itl~la~~vL~~~~ 516 (617)
T PRK14086 449 ETRIAILRKKAVQEQLNAPPEVLEFIASRI-SRNIRELEGALIRVTAFASLNRQP-VDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHhh
Confidence 999999999999999999999999999999 899999999999988888776654 88888887776443
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=2.7e-16 Score=161.81 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=98.5
Q ss_pred eEEEEcccchhc--HHHHHHHHHHhhccC--CCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCHHH
Q 012719 300 GVLFIDEVHMLD--MECFSYLNRALESSL--SPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~--~~~~~~Ll~~lE~~~--~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~~e 372 (458)
.+|+|||++.+. ...+..|+.++.... ...+|++++..+ .....+.+.+.|||. .+.+++|+.++
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p--------~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP--------QKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCH--------HHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 799999999873 223333433333211 124555664322 122245678999995 55999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
+..|++..++..++.++++++++|++.. .|++|.+...+.....++...++. ||.+.+++++.-++
T Consensus 268 r~~IL~~~~~~~~~~l~~ev~~~Ia~~~-~~~~R~L~g~l~~l~~~~~~~~~~-it~~~a~~~L~~~~ 333 (440)
T PRK14088 268 RKKIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETTGEE-VDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHh
Confidence 9999999999999999999999999999 999999999999988888777655 88888888887543
No 142
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=1.9e-16 Score=173.93 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=63.0
Q ss_pred CCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHH-----Hh-----cCCccCHHHHHHHHHH-hhcCCHHHHHHhhHHH
Q 012719 347 NSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRA-----QV-----EEIVLDEESLAHLGEI-ARDTSLRHAVQLLYPA 415 (458)
Q Consensus 347 ~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~-----~~-----~~~~i~~~~l~~i~~~-~~~g~~r~a~~ll~~a 415 (458)
|.+..++++|++||.++.|++|+.++..+|++... +. .++.++++++.+|++. ++..+.|.+...++..
T Consensus 471 N~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 471 NSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKI 550 (775)
T ss_pred CCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHH
Confidence 56778999999999989999999999999997643 22 2467999999999973 4345676666555444
Q ss_pred HHHHhh----hCC--------CCccHHHHHHHHH
Q 012719 416 SVVAKM----NGR--------DSICKADVEEVKA 437 (458)
Q Consensus 416 ~~~a~~----~~~--------~~it~~~v~~~~~ 437 (458)
...+.. .+. -.|+.++++..++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 551 CRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 322221 121 2567777666554
No 143
>PRK09087 hypothetical protein; Validated
Probab=99.71 E-value=7.8e-16 Score=144.68 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=99.3
Q ss_pred eEEEEcccchhc---HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCHHHH
Q 012719 300 GVLFIDEVHMLD---MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGPAEM 373 (458)
Q Consensus 300 ~Vl~IDE~~~l~---~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~ 373 (458)
++++||+++.++ .+.+..++...|.. ..++++++..+ .......++++||| ..+.+.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g--~~ilits~~~p--------~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAG--TSLLMTSRLWP--------SSWNVKLPDLKSRLKAATVVEIGEPDDALL 158 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCC--CeEEEECCCCh--------HHhccccccHHHHHhCCceeecCCCCHHHH
Confidence 578889888764 33445455555543 23555664322 12223468899999 6779999999999
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 374 IQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 374 ~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
..++++.++..++.++++++++|++.+ .|++|.+..+++.....+...++. ||...++++++.+
T Consensus 159 ~~iL~~~~~~~~~~l~~ev~~~La~~~-~r~~~~l~~~l~~L~~~~~~~~~~-it~~~~~~~l~~~ 222 (226)
T PRK09087 159 SQVIFKLFADRQLYVDPHVVYYLVSRM-ERSLFAAQTIVDRLDRLALERKSR-ITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhh
Confidence 999999999999999999999999999 899999999999888777666655 9999999998743
No 144
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.70 E-value=8e-16 Score=148.36 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=78.9
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
.++|++||++++|+.++.|+|||++|+|+.. ++|+.| +++..++|+++|||+.+.|++ +.+++.++
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t------------~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~ 170 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLT------------NDENKVLPTIKSRTQIFHFPK-NEAYLIQL 170 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEE------------CChhhCchHHHHcceeeeCCC-cHHHHHHH
Confidence 3499999999999999999999999999987 888888 788999999999999999977 78888887
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
+.. .| ++.+....++..+ |++..|+.+++
T Consensus 171 L~~----~g--~~~~~a~~la~~~--~s~~~A~~l~~ 199 (290)
T PRK07276 171 LEQ----KG--LLKTQAELLAKLA--QSTSEAEKLAQ 199 (290)
T ss_pred HHH----cC--CChHHHHHHHHHC--CCHHHHHHHhC
Confidence 763 23 4555556666665 68888887773
No 145
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.70 E-value=6.8e-16 Score=144.51 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=82.3
Q ss_pred eEEEEcccchhcHH--HHHHHHHHhhcc--CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCHHH
Q 012719 300 GVLFIDEVHMLDME--CFSYLNRALESS--LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~--~~~~Ll~~lE~~--~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~~e 372 (458)
-+|+||++|.+... .+..|..+++.. ....+|++++..+ .....+.+.|.||+. .+.+.++++++
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P--------~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPP--------SELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-T--------TTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCC--------ccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 79999999999643 356666665543 1224666776554 444567889999993 45999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
..+|++..+...++.++++++++|++.. .+++|.+..+|+....++.
T Consensus 171 r~~il~~~a~~~~~~l~~~v~~~l~~~~-~~~~r~L~~~l~~l~~~~~ 217 (219)
T PF00308_consen 171 RRRILQKKAKERGIELPEEVIEYLARRF-RRDVRELEGALNRLDAYAQ 217 (219)
T ss_dssp HHHHHHHHHHHTT--S-HHHHHHHHHHT-TSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 8999999999998887764
No 146
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.9e-15 Score=149.58 Aligned_cols=131 Identities=24% Similarity=0.307 Sum_probs=108.9
Q ss_pred eEEEEcccchhc------HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCH
Q 012719 300 GVLFIDEVHMLD------MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~------~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~ 370 (458)
-+|+||+++.+. .+.++.++.+.+... .+++++.+.| .....+.|.|+||+. .+.+.+|+.
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr~P--------~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDRPP--------KELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCCCc--------hhhccccHHHHHHHhceeEEeeCCCCH
Confidence 689999999975 346777777766655 5777887655 444456689999993 449999999
Q ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhch
Q 012719 371 AEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDA 442 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~ 442 (458)
+....||+.+++..++.++++++.+|+... ..++|.+...|+....+|...++ .||.+.|++++.-++..
T Consensus 247 e~r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 247 ETRLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 999999999999999999999999999998 89999999999999999988877 58888888888765554
No 147
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=1.1e-15 Score=157.40 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=98.6
Q ss_pred eEEEEcccchhc--HHHHHHHHHHhhccC--CCeEEEecCCccccccCCCCCCCCCCChhHhhhhc---ccccCCCCHHH
Q 012719 300 GVLFIDEVHMLD--MECFSYLNRALESSL--SPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV---IIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~--~~~~~~Ll~~lE~~~--~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~---~i~~~~~~~~e 372 (458)
.+|+|||++.+. ...+..|..++.... ...+|+++|..+ .....+.+.+.|||. .+.+.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P--------~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP--------ELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH--------HHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 689999999986 444555544444321 124666776543 233456789999993 44999999999
Q ss_pred HHHHHHHHHHhcCC--ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCC-CCccHHHHHHHHHh
Q 012719 373 MIQILAIRAQVEEI--VLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGR-DSICKADVEEVKAL 438 (458)
Q Consensus 373 ~~~il~~~~~~~~~--~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~-~~it~~~v~~~~~~ 438 (458)
+..||+.+++..++ .++++++++|+..+ .|++|.+.++|.++...+..... ..||.+.|++++.-
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~-~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYY-SDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 99999999998775 79999999999999 99999999999998877665522 35888888877763
No 148
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3e-15 Score=149.72 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=103.8
Q ss_pred eEEEEcccchhcHH---HHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--ccCCCCHHHH
Q 012719 300 GVLFIDEVHMLDME---CFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RTQIYGPAEM 373 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~---~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~~~~~~~e~ 373 (458)
-|+++||++.|... ....|+++.+..... .+|..+|. +.....+.|.+.||+... .|+||+.+|+
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~---------~~~~~~ld~rv~s~l~~~~I~F~pY~a~el 195 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND---------DKFLDYLDPRVKSSLGPSEIVFPPYTAEEL 195 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc---------HHHHHHhhhhhhhccCcceeeeCCCCHHHH
Confidence 78999999999765 666677776666444 45555542 123567788899999644 7999999999
Q ss_pred HHHHHHHHH--hcCCccCHHHHHHHHHHh--hcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 374 IQILAIRAQ--VEEIVLDEESLAHLGEIA--RDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 374 ~~il~~~~~--~~~~~i~~~~l~~i~~~~--~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+||..+++ .....++++++++++..+ ..||.|.|+.+|+.|..+|...+.+.++.++|+.|..
T Consensus 196 ~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 196 YDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred HHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 999999987 456679999999999653 2469999999999999999999999999999999833
No 149
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.68 E-value=9e-16 Score=164.81 Aligned_cols=136 Identities=23% Similarity=0.352 Sum_probs=103.9
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccC-------------CCe-EEEecCCccccccCCCCCCCCCCChhHhhhhccc
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSL-------------SPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII 363 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~i-~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i 363 (458)
..|||||||++.|+++.++.|+.+|++.. ..+ +|.++|+ ....++++|++||.+.
T Consensus 126 ~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np-----------~eg~l~~~L~dR~~l~ 194 (633)
T TIGR02442 126 HRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP-----------EEGDLRPQLLDRFGLC 194 (633)
T ss_pred CCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC-----------CCCCCCHHHHhhcceE
Confidence 34999999999999999999999998652 233 4444432 2346889999999654
Q ss_pred -ccCCCC-HHHHHHHHHHHH-----------------------------HhcCCccCHHHHHHHHHHhhcC---CHHHHH
Q 012719 364 -RTQIYG-PAEMIQILAIRA-----------------------------QVEEIVLDEESLAHLGEIARDT---SLRHAV 409 (458)
Q Consensus 364 -~~~~~~-~~e~~~il~~~~-----------------------------~~~~~~i~~~~l~~i~~~~~~g---~~r~a~ 409 (458)
.+.++. .++..+++.... ....+.++++++++++.++.+. ++|..+
T Consensus 195 i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i 274 (633)
T TIGR02442 195 VDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADI 274 (633)
T ss_pred EEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHH
Confidence 555554 444444443311 1124678999999999876442 589999
Q ss_pred HhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHH
Q 012719 410 QLLYPASVVAKMNGRDSICKADVEEVKALYLDAKS 444 (458)
Q Consensus 410 ~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~ 444 (458)
.+++.|+++|.+.|+..|+.+||+.|+.+.|.++.
T Consensus 275 ~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 275 VMARAARALAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999875
No 150
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.68 E-value=5.1e-15 Score=150.37 Aligned_cols=134 Identities=18% Similarity=0.206 Sum_probs=102.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-----------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcc-cccCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-----------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI-IRTQI 367 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~-i~~~~ 367 (458)
.++|+||++++++..++.|+.+|++. +.++++++||+- +......+++.+||.+ +.+++
T Consensus 109 ~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L---------PE~g~~leAL~DRFliri~vp~ 179 (498)
T PRK13531 109 EIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL---------PEADSSLEALYDRMLIRLWLDK 179 (498)
T ss_pred cEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC---------cccCCchHHhHhhEEEEEECCC
Confidence 59999999999999999999999653 335777788632 2234556689999954 38888
Q ss_pred CC-HHHHHHHHHHHHH-----------------------hcCCccCHHHHHHHHHHhh-----c----CCHHHHHHhhHH
Q 012719 368 YG-PAEMIQILAIRAQ-----------------------VEEIVLDEESLAHLGEIAR-----D----TSLRHAVQLLYP 414 (458)
Q Consensus 368 ~~-~~e~~~il~~~~~-----------------------~~~~~i~~~~l~~i~~~~~-----~----g~~r~a~~ll~~ 414 (458)
++ .++..++|..... -..+.+++.+.++|+.+.. + -|+|..+.++..
T Consensus 180 l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~ 259 (498)
T PRK13531 180 VQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRL 259 (498)
T ss_pred CCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHH
Confidence 87 4666777754211 1346788999999988752 1 379999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHhhhchH
Q 012719 415 ASVVAKMNGRDSICKADVEEVKALYLDAK 443 (458)
Q Consensus 415 a~~~a~~~~~~~it~~~v~~~~~~~~~~~ 443 (458)
+.+.|...|+..|+++||. .+.-.+..+
T Consensus 260 akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 260 LQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 9999999999999999999 555555543
No 151
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.66 E-value=8.7e-17 Score=146.22 Aligned_cols=75 Identities=27% Similarity=0.353 Sum_probs=31.6
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhcc-------------CCC-eEEEecCCccccccCCC-----------CCCCCCC
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESS-------------LSP-IVIFATNRGICNIRGTD-----------MNSPHGI 352 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~-i~il~tn~~~~~~~~~~-----------~~~~~~l 352 (458)
+.||||+||+..+++.+.+.|+..||+. |.. ++|.+.|+++|...+.+ ..+..+|
T Consensus 106 h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rl 185 (206)
T PF01078_consen 106 HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRL 185 (206)
T ss_dssp TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S---------------------------
T ss_pred cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccc
Confidence 4499999999999999999999999964 444 78999999999887742 5667789
Q ss_pred ChhHhhhhccc-ccCCCCHHH
Q 012719 353 PLDLLDRLVII-RTQIYGPAE 372 (458)
Q Consensus 353 ~~~l~sR~~~i-~~~~~~~~e 372 (458)
+.+|++|+.+. .+++++.+|
T Consensus 186 sgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 186 SGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ---------------------
T ss_pred cccccccccccccccccccCC
Confidence 99999999876 888777654
No 152
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.7e-15 Score=143.95 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=96.1
Q ss_pred hhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHH---HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 012719 19 AAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMI---RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95 (458)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~---~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p 95 (458)
.+.++|++ .--....++.+|+++|-+..+...+..+.... +....|.+++|||||||||||+.|+-||..-| +.
T Consensus 335 ~~k~~i~~-~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG--lD 411 (630)
T KOG0742|consen 335 ALKHPIQG-SRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG--LD 411 (630)
T ss_pred HHhchhhh-hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC--Cc
Confidence 34556666 33334556778999999999999888777655 44566779999999999999999999999998 55
Q ss_pred EEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccC
Q 012719 96 FCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETE 147 (458)
Q Consensus 96 ~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~ 147 (458)
+..+++.++..--......++++|+.+.. .+..-++||||+|++.+.|..
T Consensus 412 YA~mTGGDVAPlG~qaVTkiH~lFDWakk--S~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 412 YAIMTGGDVAPLGAQAVTKIHKLFDWAKK--SRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred eehhcCCCccccchHHHHHHHHHHHHHhh--cccceEEEehhhHHHHHHhch
Confidence 77778877765444455579999999875 345789999999998777654
No 153
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.65 E-value=1.1e-14 Score=140.20 Aligned_cols=126 Identities=22% Similarity=0.187 Sum_probs=92.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC----------------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL----------------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI 362 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~----------------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~ 362 (458)
++++|||++++++++++.|+.+||+.. .+ .+|+++|+.. +.....+++.+++||..
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~-------~~g~~~l~~aL~~R~~~ 179 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE-------YAGVHETQDALLDRLIT 179 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc-------ccceecccHHHHhhcEE
Confidence 899999999999999999999998631 12 4666676431 11123468899999998
Q ss_pred cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhc---------CCHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 363 IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARD---------TSLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 363 i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~---------g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
+.++.++.++..+|++.++ .++++.++.+++++.. -++|.++.+.+.+.. +..+..++++++.
T Consensus 180 i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~---~~~~~~~~~~~~~ 251 (262)
T TIGR02640 180 IFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQ---QDIPVDVDDEDFV 251 (262)
T ss_pred EECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHH---cCCCCCCCcHHHH
Confidence 8999999999999999874 4677888888766411 146776655555544 4567889999999
Q ss_pred HHHHhhh
Q 012719 434 EVKALYL 440 (458)
Q Consensus 434 ~~~~~~~ 440 (458)
.++.-.+
T Consensus 252 ~~~~~~~ 258 (262)
T TIGR02640 252 DLCIDIL 258 (262)
T ss_pred HHHHHHh
Confidence 8776443
No 154
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.65 E-value=3.9e-15 Score=154.46 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=102.6
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccC-------------CC-eEEEecCCccccccCCC-----------CCCCCCCC
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSL-------------SP-IVIFATNRGICNIRGTD-----------MNSPHGIP 353 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~-i~il~tn~~~~~~~~~~-----------~~~~~~l~ 353 (458)
.|+|||||++.++++.++.|+..||+.. .. .+|.++|+++|..++.+ ..+..+++
T Consensus 296 ~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is 375 (499)
T TIGR00368 296 NGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLS 375 (499)
T ss_pred CCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhcc
Confidence 3999999999999999999999998753 23 68889999988766531 12345799
Q ss_pred hhHhhhhccc-ccCCCCHHHH------------HHHHH-H------HHHhc-----CC-----------ccCHHHHHHHH
Q 012719 354 LDLLDRLVII-RTQIYGPAEM------------IQILA-I------RAQVE-----EI-----------VLDEESLAHLG 397 (458)
Q Consensus 354 ~~l~sR~~~i-~~~~~~~~e~------------~~il~-~------~~~~~-----~~-----------~i~~~~l~~i~ 397 (458)
.+|++||.+. .+++++.+++ ++.+. . +.+.. +- .+++++.+.+.
T Consensus 376 ~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~ 455 (499)
T TIGR00368 376 GPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLE 455 (499)
T ss_pred HhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHH
Confidence 9999999877 8887765543 22221 1 11111 11 23556555555
Q ss_pred HHhhc--CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 398 EIARD--TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 398 ~~~~~--g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
....+ -+.|....+|+.|+++|++.|.+.|+.+||.+|+.+
T Consensus 456 ~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 456 GALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 44322 378999999999999999999999999999999874
No 155
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=3.2e-15 Score=151.68 Aligned_cols=66 Identities=29% Similarity=0.468 Sum_probs=49.8
Q ss_pred Ccccc-ccchHHHHHHHHHHHH----HHHhc-------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 37 PLAAG-FVGQVEAREAAGLVVD----MIRQK-------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 37 ~~l~~-liG~~~~~~~l~~l~~----~~~~~-------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
..|++ |+||+.+++.+...+. .+..+ ..+..++||+||||||||++|+++|+.++ .||+.++++.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~--~pf~~id~~~l 144 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD--VPFAIADATTL 144 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC--CCceecchhhc
Confidence 44654 7999999998866552 12111 12347899999999999999999999998 77888877654
No 156
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.3e-15 Score=139.74 Aligned_cols=132 Identities=21% Similarity=0.269 Sum_probs=94.5
Q ss_pred ceEEEEcccchhc------------HHHHHHHHHHhhccC----------CCeEEEecCCccccccCCCCCCCCCCChhH
Q 012719 299 PGVLFIDEVHMLD------------MECFSYLNRALESSL----------SPIVIFATNRGICNIRGTDMNSPHGIPLDL 356 (458)
Q Consensus 299 ~~Vl~IDE~~~l~------------~~~~~~Ll~~lE~~~----------~~i~il~tn~~~~~~~~~~~~~~~~l~~~l 356 (458)
.||+||||++... ..+|..||.++|... .++++++++-- .+..|++|.|+|
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAF-------h~sKPSDLiPEL 323 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAF-------HVAKPSDLIPEL 323 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCce-------ecCChhhcChhh
Confidence 3999999999984 247889999999642 23555555211 468899999999
Q ss_pred hhhhccc-ccCCCCHHHHHHHHHHH-----------HHhcC--CccCHHHHHHHHHHhhcC-------CHHHHHHhhHHH
Q 012719 357 LDRLVII-RTQIYGPAEMIQILAIR-----------AQVEE--IVLDEESLAHLGEIARDT-------SLRHAVQLLYPA 415 (458)
Q Consensus 357 ~sR~~~i-~~~~~~~~e~~~il~~~-----------~~~~~--~~i~~~~l~~i~~~~~~g-------~~r~a~~ll~~a 415 (458)
..|+.+- .+.++|.+++..||... .+.++ +.+++++++.|+++|.+- +.|.+...++..
T Consensus 324 QGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 324 QGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred cCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 9999766 99999999999999732 23444 469999999999987442 467777777755
Q ss_pred HH-HHh----hhCC-CCccHHHHHHHHH
Q 012719 416 SV-VAK----MNGR-DSICKADVEEVKA 437 (458)
Q Consensus 416 ~~-~a~----~~~~-~~it~~~v~~~~~ 437 (458)
.. ++. ..|. -.|+.+-|..-++
T Consensus 404 LediSFeA~d~~g~~v~Id~~yV~~~l~ 431 (444)
T COG1220 404 LEDISFEAPDMSGQKVTIDAEYVEEKLG 431 (444)
T ss_pred HHHhCccCCcCCCCeEEEcHHHHHHHHH
Confidence 43 221 1111 2577788877665
No 157
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=5.1e-15 Score=160.30 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=82.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc------------CCCeEEEecCCccccccCCCCC----C---------CCCCCh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS------------LSPIVIFATNRGICNIRGTDMN----S---------PHGIPL 354 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~------------~~~i~il~tn~~~~~~~~~~~~----~---------~~~l~~ 354 (458)
+|+|+||++.+++++++.|+++|++. ...++|++||.+...+...... + -..+.|
T Consensus 559 sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~p 638 (758)
T PRK11034 559 AVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTP 638 (758)
T ss_pred cEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCH
Confidence 89999999999999999999999964 1237889998663321110000 0 134789
Q ss_pred hHhhhhc-ccccCCCCHHHHHHHHHHHHH---------hcCCccCHHHHHHHHHHhhc--CCHHHHHHhhH
Q 012719 355 DLLDRLV-IIRTQIYGPAEMIQILAIRAQ---------VEEIVLDEESLAHLGEIARD--TSLRHAVQLLY 413 (458)
Q Consensus 355 ~l~sR~~-~i~~~~~~~~e~~~il~~~~~---------~~~~~i~~~~l~~i~~~~~~--g~~r~a~~ll~ 413 (458)
+|+.|+. ++.|.+++.+++.+|+..... ...+.++++++++|++.+-. .+.|.+.++++
T Consensus 639 efl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 639 EFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 9999997 559999999999999875443 23467999999999986522 34565555554
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=1e-14 Score=160.72 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=75.5
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-C-------ccEEEecCCccc--c
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-K-------VPFCPMVGSEVY--S 106 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~-------~p~i~l~~~~~~--~ 106 (458)
..+++++|+++... .++..+.++.. .+++|+||||||||++|+.+|+.+.. . ..++.++.+.+. .
T Consensus 184 ~~ld~~iGr~~ei~---~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~ 258 (852)
T TIGR03345 184 GKIDPVLGRDDEIR---QMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGA 258 (852)
T ss_pred CCCCcccCCHHHHH---HHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccc
Confidence 46999999998754 44444444433 48999999999999999999998731 1 225656555554 3
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCcccc
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEET 146 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~ 146 (458)
.+.|+.+ .++..++.+... ..++|+||||++.+++.++
T Consensus 259 ~~~ge~e~~lk~ii~e~~~~--~~~~ILfIDEih~l~~~g~ 297 (852)
T TIGR03345 259 SVKGEFENRLKSVIDEVKAS--PQPIILFIDEAHTLIGAGG 297 (852)
T ss_pred ccchHHHHHHHHHHHHHHhc--CCCeEEEEeChHHhccCCC
Confidence 5777776 699999887542 3589999999999987654
No 159
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=3.2e-15 Score=158.16 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=88.1
Q ss_pred eEEEEccc----chhcHHHHHHHH-HHhhccCCCeEEEecCC-ccccccCC-CCCCCCCCChhHhh--hhcccccCCCCH
Q 012719 300 GVLFIDEV----HMLDMECFSYLN-RALESSLSPIVIFATNR-GICNIRGT-DMNSPHGIPLDLLD--RLVIIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~----~~l~~~~~~~Ll-~~lE~~~~~i~il~tn~-~~~~~~~~-~~~~~~~l~~~l~s--R~~~i~~~~~~~ 370 (458)
.|+||||+ +..+...++.|+ ...+....|++++++.. ........ ..+...-|.+++++ |+.++.|.|++.
T Consensus 197 ~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~ 276 (637)
T TIGR00602 197 KIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAP 276 (637)
T ss_pred eEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCH
Confidence 79999999 554443444444 35666666655555521 10000000 01111124478998 556789999999
Q ss_pred HHHHHHHHHHHHhcCCc------c-CHHHHHHHHHHhhcCCHHHHHHhhHHHH----HHHhhhCCCCccHHHHHHH
Q 012719 371 AEMIQILAIRAQVEEIV------L-DEESLAHLGEIARDTSLRHAVQLLYPAS----VVAKMNGRDSICKADVEEV 435 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~------i-~~~~l~~i~~~~~~g~~r~a~~ll~~a~----~~a~~~~~~~it~~~v~~~ 435 (458)
.++.+.|..++++++.. + +++++..|+..+ .||+|.|++.|+.++ .+|...+.+.++..||..+
T Consensus 277 t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s-~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a 351 (637)
T TIGR00602 277 TIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGC-SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKS 351 (637)
T ss_pred HHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhC-CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhc
Confidence 99999999999876432 2 568999999988 999999999999873 3344444556777776654
No 160
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-14 Score=154.96 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=85.1
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhcc------------CCCeEEEecCCccccccCCCC----------------CCCC
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESS------------LSPIVIFATNRGICNIRGTDM----------------NSPH 350 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~------------~~~i~il~tn~~~~~~~~~~~----------------~~~~ 350 (458)
+.|+++||++..+|+++|.||++|++. ...++|++||-+...+..... .-..
T Consensus 594 ySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~ 673 (786)
T COG0542 594 YSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKK 673 (786)
T ss_pred CeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHh
Confidence 399999999999999999999999974 334899999987553321100 1112
Q ss_pred CCChhHhhhhc-ccccCCCCHHHHHHHHHHHHH-------h--cCCccCHHHHHHHHHHhhc--CCHHHHHHhhH
Q 012719 351 GIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQ-------V--EEIVLDEESLAHLGEIARD--TSLRHAVQLLY 413 (458)
Q Consensus 351 ~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~-------~--~~~~i~~~~l~~i~~~~~~--g~~r~a~~ll~ 413 (458)
.++|+|+.|+. ++.|.+++.+++.+|+....+ . ..+.+++++.++|++.+.+ .+.|-+.+.++
T Consensus 674 ~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 674 HFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred hCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence 36789999998 669999999999999875443 2 2357999999999998632 34555555554
No 161
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.61 E-value=9.4e-15 Score=144.12 Aligned_cols=139 Identities=22% Similarity=0.328 Sum_probs=106.7
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhcc-------------CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESS-------------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI 362 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~ 362 (458)
++.|||+|||++.|+...++.||.++++. |.. ++|.+.| +....|.|+|++||..
T Consensus 143 AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmN-----------PEeGeLrpqLlDRfg~ 211 (423)
T COG1239 143 ANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMN-----------PEEGELRPQLLDRFGL 211 (423)
T ss_pred ccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecC-----------ccccccchhhHhhhcc
Confidence 44599999999999999999999999973 334 4555555 3457899999999965
Q ss_pred c-ccC-CCCHHHHHHHHHHHHHh-----------------------------cCCccCHHHHHHHHHHhhcC---CHHHH
Q 012719 363 I-RTQ-IYGPAEMIQILAIRAQV-----------------------------EEIVLDEESLAHLGEIARDT---SLRHA 408 (458)
Q Consensus 363 i-~~~-~~~~~e~~~il~~~~~~-----------------------------~~~~i~~~~l~~i~~~~~~g---~~r~a 408 (458)
- .+. +.+.++...|+.+.... ..+.+++++..+++..+.++ +.|..
T Consensus 212 ~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~rad 291 (423)
T COG1239 212 EVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRAD 291 (423)
T ss_pred eeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchh
Confidence 4 444 44566666666544331 12567888888888776443 47889
Q ss_pred HHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHH
Q 012719 409 VQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSA 446 (458)
Q Consensus 409 ~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~ 446 (458)
+.+.+.+.++|.+.|+..++.++++++..+.+-.|+-.
T Consensus 292 i~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 292 IVVVRAAKALAALRGRTEVEEEDIREAAELALLHRRRR 329 (423)
T ss_pred hHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhcc
Confidence 99999999999999999999999999999998876544
No 162
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=2.1e-14 Score=156.66 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=88.1
Q ss_pred eEEEEcccchhcHHH----HHHHHHHhhcc---------------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDMEC----FSYLNRALESS---------------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~----~~~Ll~~lE~~---------------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
.|++|||+|.++... +++|+.+++.. -+.+++++| .+...|+++|++||
T Consensus 418 ~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T------------aN~~~i~~aLl~R~ 485 (784)
T PRK10787 418 PLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT------------SNSMNIPAPLLDRM 485 (784)
T ss_pred CEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc------------CCCCCCCHHHhcce
Confidence 689999999998764 58999998741 134555566 33346999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHH-----h-----cCCccCHHHHHHHHHHh-hcCCHHHHHHhhHHHHHHHh----hhCC-
Q 012719 361 VIIRTQIYGPAEMIQILAIRAQ-----V-----EEIVLDEESLAHLGEIA-RDTSLRHAVQLLYPASVVAK----MNGR- 424 (458)
Q Consensus 361 ~~i~~~~~~~~e~~~il~~~~~-----~-----~~~~i~~~~l~~i~~~~-~~g~~r~a~~ll~~a~~~a~----~~~~- 424 (458)
.++.|.+|+.+|+.+|++.... . ..+.++++++++|++.. ...+.|.+.+.++....... ..+.
T Consensus 486 ~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~ 565 (784)
T PRK10787 486 EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSL 565 (784)
T ss_pred eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876653 1 23579999999999742 23356655555544332221 2222
Q ss_pred --CCccHHHHHHHHH
Q 012719 425 --DSICKADVEEVKA 437 (458)
Q Consensus 425 --~~it~~~v~~~~~ 437 (458)
-.|+.+++...++
T Consensus 566 ~~v~v~~~~~~~~lg 580 (784)
T PRK10787 566 KHIEINGDNLHDYLG 580 (784)
T ss_pred ceeeecHHHHHHHhC
Confidence 2588888887766
No 163
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=1.5e-14 Score=159.45 Aligned_cols=114 Identities=15% Similarity=0.250 Sum_probs=87.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------C-CeEEEecCCccccccCC--C-C--CC------------CC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------S-PIVIFATNRGICNIRGT--D-M--NS------------PH 350 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~-~i~il~tn~~~~~~~~~--~-~--~~------------~~ 350 (458)
.|+++||++.++++.++.|++++++.. . .++|++||.+...+... + . .. ..
T Consensus 670 svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (852)
T TIGR03345 670 SVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLK 749 (852)
T ss_pred cEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHH
Confidence 899999999999999999999998752 3 38999999875422110 0 0 11 12
Q ss_pred CCChhHhhhhcccccCCCCHHHHHHHHHHHHHh-------c-C--CccCHHHHHHHHHHhhcC---CHHHHHHhhHH
Q 012719 351 GIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQV-------E-E--IVLDEESLAHLGEIARDT---SLRHAVQLLYP 414 (458)
Q Consensus 351 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~-------~-~--~~i~~~~l~~i~~~~~~g---~~r~a~~ll~~ 414 (458)
.++|+|++||.++.|.+++.+++.+|+...... . + +.++++++++|++.+ .+ +.|.+.++++.
T Consensus 750 ~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g-~~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 750 VFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARC-TEVESGARNIDAILNQ 825 (852)
T ss_pred hccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHc-CCCCCChHHHHHHHHH
Confidence 378999999998899999999999999765432 1 3 579999999999988 43 68887777764
No 164
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.3e-15 Score=139.20 Aligned_cols=125 Identities=22% Similarity=0.386 Sum_probs=89.4
Q ss_pred cccc-ccchHHHHHHHHHHH----HHHHhc------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc-
Q 012719 38 LAAG-FVGQVEAREAAGLVV----DMIRQK------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY- 105 (458)
Q Consensus 38 ~l~~-liG~~~~~~~l~~l~----~~~~~~------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~- 105 (458)
-+++ +|||+.+|+.+...+ +.+... .....++|+.||+|||||.||+.||+.|+ +||...++..+.
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTE 135 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTE 135 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhh
Confidence 3444 599999999775433 122211 12246999999999999999999999999 999998887776
Q ss_pred chhhhh-hHH-HHHHHHHH-HhccccCCceEEEccccccCccccCC--ccCCchhhHHHHHHhh
Q 012719 106 SSEVKK-TEI-LMENFRRA-IGLRIKENKEVYEGEVTELSPEETES--ITGGYGKSISHVIIGL 164 (458)
Q Consensus 106 ~~~~~~-~~~-l~~~f~~a-~~~~~~~~~ii~iDE~d~l~~~~~~~--~~~~~~~~~~~~l~~l 164 (458)
.+|+|+ .++ +..++..| ......+.+++||||+|.+..+..+. .++..+..+.|.|+.+
T Consensus 136 AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKi 199 (408)
T COG1219 136 AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 199 (408)
T ss_pred ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHH
Confidence 478888 354 55555444 24444568999999999998665433 3455677777776554
No 165
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.59 E-value=5e-14 Score=142.30 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=50.9
Q ss_pred CCChhHhhhhccc-ccCCCCHHHHHHHHHHH----HH---------hcCCccCHHHHHHHHHHhh--cCCHHHHHHhhHH
Q 012719 351 GIPLDLLDRLVII-RTQIYGPAEMIQILAIR----AQ---------VEEIVLDEESLAHLGEIAR--DTSLRHAVQLLYP 414 (458)
Q Consensus 351 ~l~~~l~sR~~~i-~~~~~~~~e~~~il~~~----~~---------~~~~~i~~~~l~~i~~~~~--~g~~r~a~~ll~~ 414 (458)
++.|+|+.|+..+ .|.+++.+++.+|+... .+ ...+.++++++++|++.+. ..+.|.+..+++.
T Consensus 300 g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~ 379 (413)
T TIGR00382 300 GLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEG 379 (413)
T ss_pred hhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHH
Confidence 4789999999766 99999999999998752 22 2235799999999998752 3467777777765
Q ss_pred HHH
Q 012719 415 ASV 417 (458)
Q Consensus 415 a~~ 417 (458)
...
T Consensus 380 ~l~ 382 (413)
T TIGR00382 380 LLL 382 (413)
T ss_pred hhH
Confidence 543
No 166
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.58 E-value=6.5e-14 Score=147.66 Aligned_cols=138 Identities=24% Similarity=0.277 Sum_probs=111.7
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhcc-------------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc-c
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESS-------------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII-R 364 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~ 364 (458)
.||||+||++.+++..++.|+..||+. |.+++++++.... .+...|++++++||.+. .
T Consensus 94 ~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~--------~~~~~L~~~lLDRf~l~v~ 165 (584)
T PRK13406 94 GGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA--------EEDERAPAALADRLAFHLD 165 (584)
T ss_pred CCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh--------hcccCCCHHhHhheEEEEE
Confidence 499999999999999999999999974 4456666662111 24467999999999766 8
Q ss_pred cCCCCHHHHH-------HHHHHHHHhcCCccCHHHHHHHHHHhhcC---CHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 365 TQIYGPAEMI-------QILAIRAQVEEIVLDEESLAHLGEIARDT---SLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 365 ~~~~~~~e~~-------~il~~~~~~~~~~i~~~~l~~i~~~~~~g---~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
+..++..+.. +|...+..-.++.++++.++++++.+... ++|..+.+++.|+++|.+.|+..|+.+||.+
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 8877765542 45544444457899999999999876453 6799999999999999999999999999999
Q ss_pred HHHhhhchHH
Q 012719 435 VKALYLDAKS 444 (458)
Q Consensus 435 ~~~~~~~~~~ 444 (458)
++.+.|..|.
T Consensus 246 Aa~lvL~hR~ 255 (584)
T PRK13406 246 AARLVLAPRA 255 (584)
T ss_pred HHHHHHHhhc
Confidence 9999999875
No 167
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.58 E-value=9.3e-14 Score=147.97 Aligned_cols=133 Identities=21% Similarity=0.265 Sum_probs=97.5
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhccC---------------------CC-eEEEecCCccccccCCCCCCCCCCCh
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESSL---------------------SP-IVIFATNRGICNIRGTDMNSPHGIPL 354 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~---------------------~~-i~il~tn~~~~~~~~~~~~~~~~l~~ 354 (458)
+..|+|||||++.|+++.|..|+++|++.. .+ .+|+++|+ .....+.|
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~----------~~l~~l~~ 285 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNL----------DDLEGMHP 285 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCH----------HHHhhcCH
Confidence 344999999999999999999999997532 12 24545532 22457899
Q ss_pred hHhhhhc---cc-cc---CCCCHHHHHHHHHH---HHHhcC--CccCHHHHHHHHHHhhc---------CCHHHHHHhhH
Q 012719 355 DLLDRLV---II-RT---QIYGPAEMIQILAI---RAQVEE--IVLDEESLAHLGEIARD---------TSLRHAVQLLY 413 (458)
Q Consensus 355 ~l~sR~~---~i-~~---~~~~~~e~~~il~~---~~~~~~--~~i~~~~l~~i~~~~~~---------g~~r~a~~ll~ 413 (458)
+|++||. +. .| .+.+.+...++++. .++..+ ..+++++++.|.+.+.+ .+.|...++++
T Consensus 286 ~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 286 ALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 9999997 22 33 34456665555544 444442 36999999999976422 24799999999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 414 PASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 414 ~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.|..+|...+...|+.+||++|+...
T Consensus 366 ~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 366 AAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHH
Confidence 99989988888899999999998854
No 168
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.58 E-value=7.1e-13 Score=128.20 Aligned_cols=131 Identities=16% Similarity=0.111 Sum_probs=97.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc---CCCeE-EEecCCccccccCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS---LSPIV-IFATNRGICNIRGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMI 374 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~i~-il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~ 374 (458)
.|++|||+|.++++..+.|....+.. ...+. +++..+. . .. .... .-..++.+|+. .+.+++++.+|+.
T Consensus 125 ~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~-~~--~l~~--~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-F-RE--TLQS--PQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred eEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-H-HH--HHcC--chhHHHHhheeeeeeCCCCCHHHHH
Confidence 79999999999988888776554421 22232 3333211 0 00 0000 11235888874 5589999999999
Q ss_pred HHHHHHHHhcC----CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 375 QILAIRAQVEE----IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 375 ~il~~~~~~~~----~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+++..+++..+ ..+++++++.|++.+ +|.+|....+++.+...|...+.+.||.++|+.++.
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s-~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFS-RGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHc-CCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 99998887654 469999999999999 999999999999999988888889999999999876
No 169
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.56 E-value=1.4e-13 Score=142.23 Aligned_cols=141 Identities=22% Similarity=0.274 Sum_probs=98.9
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccC-------------CC-eEEEecCCccccccCCC---------CCCCCCCChh
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSL-------------SP-IVIFATNRGICNIRGTD---------MNSPHGIPLD 355 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~-i~il~tn~~~~~~~~~~---------~~~~~~l~~~ 355 (458)
.|+||+||++.+++..++.|+..||+.. .+ .+|.++|+++|..+..+ ..+..+|+.+
T Consensus 295 gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~p 374 (506)
T PRK09862 295 NGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGP 374 (506)
T ss_pred CCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHh
Confidence 3999999999999999999999998642 23 67788888877655421 1223579999
Q ss_pred Hhhhhccc-ccCCCCHHH-------------HH-HHHHHHH-H-----hcC-----------CccCHHHHHHHHHHhh--
Q 012719 356 LLDRLVII-RTQIYGPAE-------------MI-QILAIRA-Q-----VEE-----------IVLDEESLAHLGEIAR-- 401 (458)
Q Consensus 356 l~sR~~~i-~~~~~~~~e-------------~~-~il~~~~-~-----~~~-----------~~i~~~~l~~i~~~~~-- 401 (458)
++|||.+. .+++++.++ +. .++..+. + ..+ ..+++++...+.....
T Consensus 375 lLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~ 454 (506)
T PRK09862 375 FLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHL 454 (506)
T ss_pred HHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999775 777664322 22 1111110 0 112 2345555554443221
Q ss_pred cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 402 DTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 402 ~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+-++|....+++.|+++|.+.|++.|+.+||.+|+.+=
T Consensus 455 ~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 455 GLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 34799999999999999999999999999999999853
No 170
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.56 E-value=1.3e-13 Score=146.74 Aligned_cols=136 Identities=22% Similarity=0.337 Sum_probs=104.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-------------CCeEEEec-CCccccccCCCCCCCCCCChhHhhhhccc-c
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-------------SPIVIFAT-NRGICNIRGTDMNSPHGIPLDLLDRLVII-R 364 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~i~il~t-n~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~ 364 (458)
|+|||||+++++++.++.|+.+|++.. .++.+++| |+. .....|+++|++||.+. .
T Consensus 86 GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~---------e~~g~L~~~LldRf~l~v~ 156 (589)
T TIGR02031 86 GVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA---------EGGGGLPDHLLDRLALHVS 156 (589)
T ss_pred CcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc---------cccCCCCHHHHHhccCeee
Confidence 899999999999999999999998653 34444444 321 11247999999999764 4
Q ss_pred cC-CCCHHHHHHHHHHHH-----------------------HhcCCccCHHHHHHHHHHhhcC---CHHHHHHhhHHHHH
Q 012719 365 TQ-IYGPAEMIQILAIRA-----------------------QVEEIVLDEESLAHLGEIARDT---SLRHAVQLLYPASV 417 (458)
Q Consensus 365 ~~-~~~~~e~~~il~~~~-----------------------~~~~~~i~~~~l~~i~~~~~~g---~~r~a~~ll~~a~~ 417 (458)
+. ..+.++..+|+.... ....+.++++++++|+.++... ++|..+.+++.|.+
T Consensus 157 ~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA 236 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKA 236 (589)
T ss_pred cCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 33 334555455554322 1235789999999999876442 58999999999999
Q ss_pred HHhhhCCCCccHHHHHHHHHhhhchHH
Q 012719 418 VAKMNGRDSICKADVEEVKALYLDAKS 444 (458)
Q Consensus 418 ~a~~~~~~~it~~~v~~~~~~~~~~~~ 444 (458)
+|.+.|+..|+++||+.++.+.+.+|.
T Consensus 237 ~Aal~gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 237 HAALHGRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999875
No 171
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.5e-13 Score=135.83 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=64.5
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
..+|++||+++.|+++++|.|++++|+++.. .+|++| .++..++++++|||+.+.|.+++.+++...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvt------------h~~~~ll~ti~SRc~~~~~~~~~~~~~~~~ 180 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVS------------HAADKVLPTIKSRCRKMVLPAPSHEEALAY 180 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEe------------CChHhChHHHHHHhhhhcCCCCCHHHHHHH
Confidence 3499999999999999999999999999765 688888 788899999999999999999999999999
Q ss_pred HHHH
Q 012719 377 LAIR 380 (458)
Q Consensus 377 l~~~ 380 (458)
|...
T Consensus 181 L~~~ 184 (325)
T PRK08699 181 LRER 184 (325)
T ss_pred HHhc
Confidence 8653
No 172
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.1e-13 Score=134.73 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=80.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++||+++.|+.+++|+|++++|+||.. ++|+.+ +.+..+.|+++|||+.+.|.+++++++.+.|.
T Consensus 92 KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~------------~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 92 KILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTT------------KNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred eEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEe------------CChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999988 777788 67789999999999999999999999999887
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhh
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLL 412 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll 412 (458)
.. .++++....++..+ + ++..|+.++
T Consensus 160 ~~------~~~~~~a~~~a~~~-~-~~~~a~~~~ 185 (299)
T PRK07132 160 SK------NKEKEYNWFYAYIF-S-NFEQAEKYI 185 (299)
T ss_pred Hc------CCChhHHHHHHHHc-C-CHHHHHHHH
Confidence 54 36777777888777 4 577666654
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=3.8e-14 Score=121.41 Aligned_cols=73 Identities=38% Similarity=0.596 Sum_probs=66.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccc
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~ 145 (458)
+||+||||||||++|+.+|+.++ .+++.++++++.+.+.++.. .+...|+++.... .|+++|+||+|.+.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA--KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS--TSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--cccccccccccccccccccccccccccccccccc--cceeeeeccchhccccc
Confidence 68999999999999999999998 78999999999988888877 6999999987533 58999999999999887
No 174
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.3e-13 Score=128.99 Aligned_cols=108 Identities=23% Similarity=0.306 Sum_probs=77.3
Q ss_pred cccccchHHHHHHHHHHHH----HHHhcccC-----CceEEEEcCCCChHHHHHHHHHHHhC-------CCccEEEecCC
Q 012719 39 AAGFVGQVEAREAAGLVVD----MIRQKKMA-----GRALLLAGPPGTGKTALALGICQELG-------SKVPFCPMVGS 102 (458)
Q Consensus 39 l~~liG~~~~~~~l~~l~~----~~~~~~~~-----~~~~Ll~GppGtGKT~lA~alA~~l~-------~~~p~i~l~~~ 102 (458)
|+.++=-.++|+.+-.++. +...+... .|-+|++||||||||+|+++||+.|. +...+++++.-
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 4455555566665543331 22223222 46789999999999999999999882 22458999999
Q ss_pred cccchhhhhhH-HHHHHHHHHHhccccCCc--eEEEccccccCcccc
Q 012719 103 EVYSSEVKKTE-ILMENFRRAIGLRIKENK--EVYEGEVTELSPEET 146 (458)
Q Consensus 103 ~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~--ii~iDE~d~l~~~~~ 146 (458)
.++++|.++.. .+.+.|++..++-....+ .++|||++++...|.
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~ 267 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAART 267 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHH
Confidence 99999999988 588999988766554443 445799988876664
No 175
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5e-12 Score=131.70 Aligned_cols=165 Identities=24% Similarity=0.249 Sum_probs=108.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccc
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~ 145 (458)
..+|++|+||||||++++++|++++ .|++.+++.++.....+.++ .+...|.+|+. +.|++||+-.+|-+..+.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg--~h~~evdc~el~~~s~~~~etkl~~~f~~a~~---~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELG--LHLLEVDCYELVAESASHTETKLQAIFSRARR---CSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhC--CceEeccHHHHhhcccchhHHHHHHHHHHHhh---cCceEEEEeccceeeecC
Confidence 4799999999999999999999999 88999999999999999988 69999999986 569999999999988444
Q ss_pred cCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCcccccccccccccccccc
Q 012719 146 TESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVP 225 (458)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~ 225 (458)
++ +....+.+.+-.+-+ ........+.+++|..+++.-..+.. .....+| ++.+|
T Consensus 507 dg----ged~rl~~~i~~~ls----------------~e~~~~~~~~~ivv~t~~s~~~lp~~-i~~~f~~----ei~~~ 561 (953)
T KOG0736|consen 507 DG----GEDARLLKVIRHLLS----------------NEDFKFSCPPVIVVATTSSIEDLPAD-IQSLFLH----EIEVP 561 (953)
T ss_pred CC----chhHHHHHHHHHHHh----------------cccccCCCCceEEEEeccccccCCHH-HHHhhhh----hccCC
Confidence 33 222222222221101 11122345566777666644333321 1112222 45555
Q ss_pred CCCcchHHHHHHHhhcCHh-------hHHHHhcCCCCh--hhHHHHH
Q 012719 226 LPKGEVHKKKEIVQDVTLH-------DLDAANARPQGG--QDILSLM 263 (458)
Q Consensus 226 ~p~~~~~~r~~i~~~~~l~-------~l~~~~~~~~g~--adl~~l~ 263 (458)
.| +..+|.++++....+ .+..++.++.|+ .++.+++
T Consensus 562 ~l--se~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~ 606 (953)
T KOG0736|consen 562 AL--SEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALV 606 (953)
T ss_pred CC--CHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHh
Confidence 55 566688877654322 334556667775 6665554
No 176
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.52 E-value=3.8e-13 Score=145.87 Aligned_cols=92 Identities=17% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCChhHhhhhcccccCCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHhhcC-----CHHHHHHhhHHHHHHHhh
Q 012719 351 GIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQ----VEEIVLDEESLAHLGEIARDT-----SLRHAVQLLYPASVVAKM 421 (458)
Q Consensus 351 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~----~~~~~i~~~~l~~i~~~~~~g-----~~r~a~~ll~~a~~~a~~ 421 (458)
...++|.+||+.+.+++++.++..+||+.... ..++.++++++..+++++.+. -|..|+.+|+.|+.....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~ 411 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL 411 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhcc
Confidence 45778999999999999999999999986543 457889999999999988332 266999999988765433
Q ss_pred h----CCCCccHHHHHHHHHhhhch
Q 012719 422 N----GRDSICKADVEEVKALYLDA 442 (458)
Q Consensus 422 ~----~~~~it~~~v~~~~~~~~~~ 442 (458)
. ....|+.++|..++.-+...
T Consensus 412 ~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 412 MPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred CcccccccccChhhHHHHHHHHhCC
Confidence 1 23458899999887755443
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.51 E-value=5.3e-13 Score=148.16 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=87.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc------------CCCeEEEecCCccccccCC----CC---------CCCCCCCh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS------------LSPIVIFATNRGICNIRGT----DM---------NSPHGIPL 354 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~------------~~~i~il~tn~~~~~~~~~----~~---------~~~~~l~~ 354 (458)
.|+++||++.+++++++.|+++|++. ...++|++||.+...+... +. .....+.|
T Consensus 669 ~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~p 748 (852)
T TIGR03346 669 SVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRP 748 (852)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCH
Confidence 79999999999999999999999875 2237889998764321110 00 01334778
Q ss_pred hHhhhhc-ccccCCCCHHHHHHHHHHHHH-------hc--CCccCHHHHHHHHHHhh--cCCHHHHHHhhHHHH
Q 012719 355 DLLDRLV-IIRTQIYGPAEMIQILAIRAQ-------VE--EIVLDEESLAHLGEIAR--DTSLRHAVQLLYPAS 416 (458)
Q Consensus 355 ~l~sR~~-~i~~~~~~~~e~~~il~~~~~-------~~--~~~i~~~~l~~i~~~~~--~g~~r~a~~ll~~a~ 416 (458)
+|+.|+. ++.|.|++.+++.+|+..... .. .+.++++++++|++..- .++.|.+.+.++...
T Consensus 749 el~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 9999995 559999999999999875443 22 36799999999999743 578888777777554
No 178
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.5e-13 Score=137.44 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=77.6
Q ss_pred CCCCCccCCCCCCccc--------cccchHHHHHHHHHHHHHH-HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 012719 25 KGLGLEANGNAVPLAA--------GFVGQVEAREAAGLVVDMI-RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95 (458)
Q Consensus 25 ~~~~~~~~~~~~~~l~--------~liG~~~~~~~l~~l~~~~-~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p 95 (458)
-.|+|.....-+.++. |=-|.+++|+.+-+++.-- ..+...+.-++|+||||+|||+|++.+|+.++. .
T Consensus 300 l~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R--k 377 (782)
T COG0466 300 LDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR--K 377 (782)
T ss_pred HhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC--C
Confidence 5566666555444443 2368999999877665422 334445568999999999999999999999995 4
Q ss_pred EEEecCCcc------c---chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCcc
Q 012719 96 FCPMVGSEV------Y---SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPE 144 (458)
Q Consensus 96 ~i~l~~~~~------~---~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~ 144 (458)
|++++-.-+ - ..|+|.-. .+-+..++|.. ..-++++||+|.+...
T Consensus 378 fvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~----~NPv~LLDEIDKm~ss 432 (782)
T COG0466 378 FVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV----KNPVFLLDEIDKMGSS 432 (782)
T ss_pred EEEEecCccccHHHhccccccccccCChHHHHHHHHhCC----cCCeEEeechhhccCC
Confidence 777765322 1 13555533 45566666643 3578889999998754
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.50 E-value=8.3e-13 Score=136.80 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=86.1
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhc-----------------------cCCCeEEEecCCccccccCCCCCCCCCCChh
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALES-----------------------SLSPIVIFATNRGICNIRGTDMNSPHGIPLD 355 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~-----------------------~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~ 355 (458)
+..|+||||+-.++.+.+.|+..++. ...||+.++.|-.. -=.-+
T Consensus 388 P~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa------------PaLR~ 455 (877)
T KOG1969|consen 388 PVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA------------PALRP 455 (877)
T ss_pred cceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc------------hhhhh
Confidence 37889999999998888888888871 12255554443211 11124
Q ss_pred HhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 356 LLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 356 l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
|+--|.++.|.++++.-+.+.|+.+|..+|+.++..++..|++++ ++|+|.+++.|+....-+.
T Consensus 456 Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~-~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 456 LRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELT-QNDIRSCINTLQFLASNVD 519 (877)
T ss_pred cccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHh-cchHHHHHHHHHHHHHhcc
Confidence 666778889999999999999999999999999999999999999 9999999999996655443
No 180
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.50 E-value=1.4e-12 Score=137.03 Aligned_cols=142 Identities=21% Similarity=0.177 Sum_probs=100.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-------------CC-eEEEecCCccccc-cCCCCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-------------SP-IVIFATNRGICNI-RGTDMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~-i~il~tn~~~~~~-~~~~~~~~~~l~~~l~sR~~~i- 363 (458)
|+++|||++.|+++.+..|+.+||+.. .+ .+|.++|+..-.. .......--.|+++++|||..+
T Consensus 302 Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~ 381 (509)
T smart00350 302 GVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLF 381 (509)
T ss_pred CEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEE
Confidence 999999999999999999999998642 23 4566666542110 1111222237999999999554
Q ss_pred -ccCCCCHHHHHHHHHHHHH------------------------------h-cCCccCHHHHHHHHHHhhc---------
Q 012719 364 -RTQIYGPAEMIQILAIRAQ------------------------------V-EEIVLDEESLAHLGEIARD--------- 402 (458)
Q Consensus 364 -~~~~~~~~e~~~il~~~~~------------------------------~-~~~~i~~~~l~~i~~~~~~--------- 402 (458)
..++++.+.-.+++..+.. . ....+++++.++|.++..+
T Consensus 382 ~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~ 461 (509)
T smart00350 382 VVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSE 461 (509)
T ss_pred EecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccc
Confidence 5566666655555544221 1 1125789888888754211
Q ss_pred ------CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 403 ------TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 403 ------g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
-++|.++.+++.|.++|.+.++..|+.+||..|+.++..
T Consensus 462 ~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 462 ARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred cccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 158999999999999999999999999999999998753
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.49 E-value=1.3e-12 Score=144.57 Aligned_cols=116 Identities=24% Similarity=0.350 Sum_probs=83.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc------------CCCeEEEecCCcccccc---CC-C---------CCCCCCCCh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS------------LSPIVIFATNRGICNIR---GT-D---------MNSPHGIPL 354 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~------------~~~i~il~tn~~~~~~~---~~-~---------~~~~~~l~~ 354 (458)
+||+|||++.+++++++.|++++++. ...++|++||.+...+. +. . ......+.|
T Consensus 672 ~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P 751 (857)
T PRK10865 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRP 751 (857)
T ss_pred CeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccH
Confidence 89999999999999999999999874 22378889987532211 00 0 011345789
Q ss_pred hHhhhh-cccccCCCCHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHhhc--CCHHHHHHhhHHH
Q 012719 355 DLLDRL-VIIRTQIYGPAEMIQILAIRAQV---------EEIVLDEESLAHLGEIARD--TSLRHAVQLLYPA 415 (458)
Q Consensus 355 ~l~sR~-~~i~~~~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~i~~~~~~--g~~r~a~~ll~~a 415 (458)
+|++|+ .++.|.|++.+++.+|+...... ..+.++++++++|++.+.. .+.|.+.+.++.-
T Consensus 752 ELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 752 EFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 999999 56699999999999988765432 2356899999999986522 3566666665533
No 182
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.47 E-value=2.7e-12 Score=127.95 Aligned_cols=139 Identities=26% Similarity=0.355 Sum_probs=100.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc------------CCCeEEEec-CCccccccCCCCCCCCCCChhHhhhh-ccccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS------------LSPIVIFAT-NRGICNIRGTDMNSPHGIPLDLLDRL-VIIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~------------~~~i~il~t-n~~~~~~~~~~~~~~~~l~~~l~sR~-~~i~~ 365 (458)
+|+++|||++.+++.+++|+.+|++. +.++++++| |+. +......+++++++|| ..+.+
T Consensus 114 ~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~-------e~~g~~~l~eA~ldRf~~~~~v 186 (329)
T COG0714 114 VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG-------EYEGTYPLPEALLDRFLLRIYV 186 (329)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc-------ccCCCcCCCHHHHhhEEEEEec
Confidence 59999999999999999999999972 234555555 532 2245667899999999 55688
Q ss_pred CCCCHHH-HHHHHHHHH-------------------------HhcCCccCHHHHHHHHHHhhc---C-------CHHHHH
Q 012719 366 QIYGPAE-MIQILAIRA-------------------------QVEEIVLDEESLAHLGEIARD---T-------SLRHAV 409 (458)
Q Consensus 366 ~~~~~~e-~~~il~~~~-------------------------~~~~~~i~~~~l~~i~~~~~~---g-------~~r~a~ 409 (458)
+.+..++ ...++.... ...+..+++++..++..+... . ++|...
T Consensus 187 ~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~ 266 (329)
T COG0714 187 DYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASL 266 (329)
T ss_pred CCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHH
Confidence 8884443 333332111 111466788888887765311 1 488888
Q ss_pred HhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHH
Q 012719 410 QLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSS 445 (458)
Q Consensus 410 ~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~ 445 (458)
.++..+...|...++..+.++++.......+..+..
T Consensus 267 ~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~~~~ 302 (329)
T COG0714 267 ALLAALRALALLDGRDAVIPDDVKALAEPALAHRLI 302 (329)
T ss_pred HHHHHHHhhhhhcCccccCHHHHHHHhhhhhhhhhh
Confidence 999999999999999999999999888877776543
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=1.5e-12 Score=144.12 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=75.6
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC--------CccEEEecCCccc--c
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS--------KVPFCPMVGSEVY--S 106 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~--------~~p~i~l~~~~~~--~ 106 (458)
..+++++|+++... .++..+.+... .+++|+||||||||++|+++|..+.. ..+++.++...+. .
T Consensus 175 ~~l~~vigr~~ei~---~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~ 249 (857)
T PRK10865 175 GKLDPVIGRDEEIR---RTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA 249 (857)
T ss_pred CCCCcCCCCHHHHH---HHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhcc
Confidence 46899999998644 34443334333 48999999999999999999998821 2567777666655 4
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCcccc
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEET 146 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~ 146 (458)
++.|..+ .++..|+.+... ..++++||||++.+++.+.
T Consensus 250 ~~~g~~e~~lk~~~~~~~~~--~~~~ILfIDEih~l~~~~~ 288 (857)
T PRK10865 250 KYRGEFEERLKGVLNDLAKQ--EGNVILFIDELHTMVGAGK 288 (857)
T ss_pred chhhhhHHHHHHHHHHHHHc--CCCeEEEEecHHHhccCCC
Confidence 5777776 588888876431 3589999999999986653
No 184
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.46 E-value=2.1e-12 Score=137.24 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=98.3
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhccC---------------------CC-eEEEecCCccccccCCCCCCCCCCCh
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESSL---------------------SP-IVIFATNRGICNIRGTDMNSPHGIPL 354 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~---------------------~~-i~il~tn~~~~~~~~~~~~~~~~l~~ 354 (458)
+..|+|||||++.|++..|..|+++|++.. .+ .+|+++|+ .....+.|
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~----------~ll~~~dp 294 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL----------DALENMHP 294 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc----------CHHHhhhH
Confidence 445999999999999999999999997532 11 25555543 23456688
Q ss_pred hHhhhhcc----ccc---CCCCHHHHHHHHHHHHHhc-----CCccCHHHHHHHHHHhhc--C-------CHHHHHHhhH
Q 012719 355 DLLDRLVI----IRT---QIYGPAEMIQILAIRAQVE-----EIVLDEESLAHLGEIARD--T-------SLRHAVQLLY 413 (458)
Q Consensus 355 ~l~sR~~~----i~~---~~~~~~e~~~il~~~~~~~-----~~~i~~~~l~~i~~~~~~--g-------~~r~a~~ll~ 413 (458)
+|++||.. +.| .+-+++...++++..++.. -..++++++..|++.+.+ | ..|.+..+++
T Consensus 295 dL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r 374 (637)
T PRK13765 295 ALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVR 374 (637)
T ss_pred HHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHH
Confidence 99999852 233 3456777788887666532 236999999999986532 2 2788899999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHH
Q 012719 414 PASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 414 ~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.|..+|...+...++.+||.+|..
T Consensus 375 ~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 375 VAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHhhccceecHHHHHHHHH
Confidence 999999999999999999998873
No 185
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.45 E-value=1.4e-12 Score=144.86 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=71.7
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC--------CccEEEecCCccc--c
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS--------KVPFCPMVGSEVY--S 106 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~--------~~p~i~l~~~~~~--~ 106 (458)
..++.++|+++... .++..+.++.. .+++|+||||||||++|+++|..+.. ..+++.++.+.+. .
T Consensus 170 ~~~~~~igr~~ei~---~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~ 244 (852)
T TIGR03346 170 GKLDPVIGRDEEIR---RTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA 244 (852)
T ss_pred CCCCcCCCcHHHHH---HHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcc
Confidence 35899999998654 33343334332 58999999999999999999998721 2456666655554 4
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccc
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~ 145 (458)
.|.|..+ .+...|+.+... ..++++||||++.+++.+
T Consensus 245 ~~~g~~e~~l~~~l~~~~~~--~~~~ILfIDEih~l~~~g 282 (852)
T TIGR03346 245 KYRGEFEERLKAVLNEVTKS--EGQIILFIDELHTLVGAG 282 (852)
T ss_pred hhhhhHHHHHHHHHHHHHhc--CCCeEEEeccHHHhhcCC
Confidence 5667666 577888766431 247899999998887543
No 186
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.44 E-value=6.5e-12 Score=122.50 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=68.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-------------CCC-e-EEEecCCccccccCCCCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-------------LSP-I-VIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~-i-~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i- 363 (458)
.++++||+++++++.++.|+.++|.. +.| + +|.++|+.+.....-.+.-...+++++++||.++
T Consensus 136 ~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~ 215 (327)
T TIGR01650 136 VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVT 215 (327)
T ss_pred eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEe
Confidence 78999999999999999999999831 222 3 4555554321100001233446789999999765
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHh
Q 012719 364 RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIA 400 (458)
Q Consensus 364 ~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~ 400 (458)
.+..++.++..+|+...+....-.-+++.++++++++
T Consensus 216 ~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 216 TLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred eCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 8999999999999987653222112456777777654
No 187
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=9.6e-13 Score=118.15 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=93.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc-------------ccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI-------------IRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~-------------i~~ 365 (458)
+.++||+++.|+.+++|+|||++|+||.. ++|+.| +.+..++|+++|||+. +.+
T Consensus 56 ~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t------------~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l 123 (206)
T PRK08485 56 EKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVA------------KSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDL 123 (206)
T ss_pred cEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEe------------CChHhCchHHHhhheecccccccccccccccc
Confidence 44578999999999999999999999988 888888 8899999999999986 579
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHH
Q 012719 366 QIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASV 417 (458)
Q Consensus 366 ~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~ 417 (458)
.+++.+++...|+. .+++++...+++++.|+.++ .|++|+++.+.+.+..
T Consensus 124 ~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la-~~s~r~~l~l~~q~l~ 173 (206)
T PRK08485 124 KKLDLKDIYEFLKE-LEKENKLSKEELKELIESLL-KECVKYKIPLNEEELE 173 (206)
T ss_pred CCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHH-HHHHHHHcCccHHHHH
Confidence 99999999999998 67888888999999999999 9999999888775543
No 188
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.5e-12 Score=126.14 Aligned_cols=255 Identities=18% Similarity=0.228 Sum_probs=153.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc-hhhhhh-H-HHHHHHHHHH-hccccCCceEEEccccccC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS-SEVKKT-E-ILMENFRRAI-GLRIKENKEVYEGEVTELS 142 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~-~~~~~~-~-~l~~~f~~a~-~~~~~~~~ii~iDE~d~l~ 142 (458)
.++|+.||+|+|||.||+.||+.++ +||...++..+.. .|+|+- + .+.+++..|. .....+.+|+|+||+|.|.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld--VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD--VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC--CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 5899999999999999999999999 9999998887764 788883 4 4777777664 3344568999999999998
Q ss_pred ccc-cCC-ccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhccccCCeEEEeccC------cccccCCccccccc
Q 012719 143 PEE-TES-ITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANS------GAVKRVGRSDAFAT 214 (458)
Q Consensus 143 ~~~-~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~------~~~~~~gr~~~~~~ 214 (458)
.+- +-+ .++..+..+.+-|+.|-...-+..-.- ...+-..|+.+.|+.++ ++...+++.. .+
T Consensus 305 ~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK--------~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I--~r 374 (564)
T KOG0745|consen 305 KKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEK--------GSRRKPRGDTVQIDTTNILFIASGAFVGLDKII--SR 374 (564)
T ss_pred ccCccccccccccchhHHHHHHHHhcccEEcccCC--------CCCCCCCCCeEEEeccceEEEecccccchHHHH--HH
Confidence 443 322 345567888887776643321111000 00123467777776555 1111111111 01
Q ss_pred cccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCCh-hhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhc
Q 012719 215 EFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGG-QDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEG 293 (458)
Q Consensus 215 ~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~-adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~ 293 (458)
|. ....-|| +.-..=+.+.+...
T Consensus 375 R~---------------------------------~d~slGFg~~s~~~vr~~~~~~----------------------- 398 (564)
T KOG0745|consen 375 RL---------------------------------DDKSLGFGAPSSKGVRANMATK----------------------- 398 (564)
T ss_pred hh---------------------------------cchhcccCCCCCccchhhcccc-----------------------
Confidence 11 1111121 00000000000000
Q ss_pred cccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc-ccCCCCHHH
Q 012719 294 AAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII-RTQIYGPAE 372 (458)
Q Consensus 294 ~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~~~~~~~~e 372 (458)
+-.......-+-|+...+... --..++.|+|..|+.++ .|.+++.+.
T Consensus 399 ------------s~~~~~~~~~~~lL~~~~~~D--------------------LisfGmIPEfVGRfPVlVplh~L~~~~ 446 (564)
T KOG0745|consen 399 ------------SGVENDAEKRDELLEKVESGD--------------------LISFGMIPEFVGRFPVLVPLHSLDEDQ 446 (564)
T ss_pred ------------cCcchhHHHHHHHHhhccccc--------------------hhhhcCcHHHhcccceEeeccccCHHH
Confidence 000011122333444333222 12368999999999888 999999999
Q ss_pred HHHHHHHHH-----------Hhc--CCccCHHHHHHHHHHhhc--CCHHHHHHhhHHHHHHHhh
Q 012719 373 MIQILAIRA-----------QVE--EIVLDEESLAHLGEIARD--TSLRHAVQLLYPASVVAKM 421 (458)
Q Consensus 373 ~~~il~~~~-----------~~~--~~~i~~~~l~~i~~~~~~--g~~r~a~~ll~~a~~~a~~ 421 (458)
+.++|...- ... .+.++++|++.|+++|.. .+.|-+..+++.+..-|..
T Consensus 447 Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 447 LVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred HHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcc
Confidence 999997421 122 356999999999987633 5788888899988776653
No 189
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.7e-12 Score=130.36 Aligned_cols=96 Identities=23% Similarity=0.372 Sum_probs=64.6
Q ss_pred cccchHHHHHHHHHHHHHHH-hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc------cc---hhhh
Q 012719 41 GFVGQVEAREAAGLVVDMIR-QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV------YS---SEVK 110 (458)
Q Consensus 41 ~liG~~~~~~~l~~l~~~~~-~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~------~~---~~~~ 110 (458)
|=-|.+++|+.+-+++.--+ +|...+.-++|+||||+|||++|+.+|..||.+ |++++-.-+ -+ .|+|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--FfRfSvGG~tDvAeIkGHRRTYVG 489 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--FFRFSVGGMTDVAEIKGHRRTYVG 489 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--eEEEeccccccHHhhcccceeeec
Confidence 44789999998776653222 244456789999999999999999999999966 655554222 11 2444
Q ss_pred hhH-HHHHHHHHHHhccccCCceEEEccccccC
Q 012719 111 KTE-ILMENFRRAIGLRIKENKEVYEGEVTELS 142 (458)
Q Consensus 111 ~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~ 142 (458)
.-. .+-+..+... -..-+++|||+|.+.
T Consensus 490 AMPGkiIq~LK~v~----t~NPliLiDEvDKlG 518 (906)
T KOG2004|consen 490 AMPGKIIQCLKKVK----TENPLILIDEVDKLG 518 (906)
T ss_pred cCChHHHHHHHhhC----CCCceEEeehhhhhC
Confidence 422 3444444433 235678899999987
No 190
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.37 E-value=3.7e-11 Score=118.44 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=66.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccC
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQ 366 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~ 366 (458)
.||+-++|+..++.+.++.||.++++.. .. ++|..+|......+ .....+.+|++||..+.++
T Consensus 237 rGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~-----~~~k~~eaf~dR~~~i~vp 311 (361)
T smart00763 237 RGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRF-----KSNKKNEALLDRIIKVKVP 311 (361)
T ss_pred CceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhh-----hccccchhhhhceEEEeCC
Confidence 3999999999999999999999999641 12 45666654321110 0124578999999988877
Q ss_pred CCC-HHHHHHHHHHHHHhc---CCccCHHHHHHHHHHh
Q 012719 367 IYG-PAEMIQILAIRAQVE---EIVLDEESLAHLGEIA 400 (458)
Q Consensus 367 ~~~-~~e~~~il~~~~~~~---~~~i~~~~l~~i~~~~ 400 (458)
.+. -.+-.+|.++.+... +..+.+-+++.++..+
T Consensus 312 Y~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~a 349 (361)
T smart00763 312 YCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALFS 349 (361)
T ss_pred CcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHHH
Confidence 664 566667777776643 4567776666666554
No 191
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=1.1e-10 Score=107.83 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=71.3
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHH
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQ 375 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 375 (458)
...+|++||+++.|+.++.|+|||++||||.. ++|+.| ..+..++|+++|||+.+.|..++..+..+
T Consensus 88 g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit------------~~~~~LLpTIrSRCq~i~~~~p~~~~~~e 155 (263)
T PRK06581 88 SGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLIT------------SRAASIISTIRSRCFKINVRSSILHAYNE 155 (263)
T ss_pred CCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEe------------CChhhCchhHhhceEEEeCCCCCHHHHHH
Confidence 33499999999999999999999999999988 777888 78899999999999999999988866655
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHHh
Q 012719 376 ILAIRAQVEEIVLDEESLAHLGEIA 400 (458)
Q Consensus 376 il~~~~~~~~~~i~~~~l~~i~~~~ 400 (458)
....-. .-..+.+-+++|.+..
T Consensus 156 ~~~~~~---~p~~~~~~l~~i~~~~ 177 (263)
T PRK06581 156 LYSQFI---QPIADNKTLDFINRFT 177 (263)
T ss_pred HHHHhc---ccccccHHHHHHHHHh
Confidence 544322 1223445577777765
No 192
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.32 E-value=4.8e-12 Score=106.04 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=35.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-----------CCCeEEEec-CCccccccCCCCCCCCCCChhHhhhhc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-----------LSPIVIFAT-NRGICNIRGTDMNSPHGIPLDLLDRLV 361 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~i~il~t-n~~~~~~~~~~~~~~~~l~~~l~sR~~ 361 (458)
.|+++||+++.++..|++|+.+|+|. +.+++|++| |+. +......||.++++||.
T Consensus 64 ~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~-------e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPV-------EQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT---------S------HHHHTTSS
T ss_pred ceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcc-------ccCceecCCHHHhcccc
Confidence 79999999999999999999999973 456666666 321 12334578999999985
No 193
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.30 E-value=1.6e-10 Score=107.52 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecC
Q 012719 36 VPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVG 101 (458)
Q Consensus 36 ~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~ 101 (458)
...+++|+|.+..++.+..=....-.|. |..|+|++|++|||||++++++..++.. .+.+|++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 3569999999999998766556666675 4589999999999999999999988743 234555443
No 194
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.27 E-value=4.4e-10 Score=117.27 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=81.2
Q ss_pred eEEEEcccchhc----HHHHHHHHHHhhccCC-CeEEEecCC---ccc-cccCCCCCCCCCCChhHhhhh--cccccCCC
Q 012719 300 GVLFIDEVHMLD----MECFSYLNRALESSLS-PIVIFATNR---GIC-NIRGTDMNSPHGIPLDLLDRL--VIIRTQIY 368 (458)
Q Consensus 300 ~Vl~IDE~~~l~----~~~~~~Ll~~lE~~~~-~i~il~tn~---~~~-~~~~~~~~~~~~l~~~l~sR~--~~i~~~~~ 368 (458)
.|++|+|+-... ....+.|.+++..... |+||+.|.- .+. ..+...++...-+++.++..+ ..|.|.|+
T Consensus 134 kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpI 213 (519)
T PF03215_consen 134 KVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPI 213 (519)
T ss_pred eEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCC
Confidence 789999876542 3456667777776666 876666621 110 000011222235677787755 56799999
Q ss_pred CHHHHHHHHHHHHHhc-----CC-ccC--HHHHHHHHHHhhcCCHHHHHHhhHHHHH
Q 012719 369 GPAEMIQILAIRAQVE-----EI-VLD--EESLAHLGEIARDTSLRHAVQLLYPASV 417 (458)
Q Consensus 369 ~~~e~~~il~~~~~~~-----~~-~i~--~~~l~~i~~~~~~g~~r~a~~ll~~a~~ 417 (458)
+.--|.+.|+.++..+ +. ..+ .+.++.|++.+ .||+|.|++.|+..+.
T Consensus 214 a~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s-~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 214 APTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS-NGDIRSAINNLQFWCL 269 (519)
T ss_pred CHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc-CchHHHHHHHHHHHhc
Confidence 9999999999999887 22 333 35699999999 9999999999997765
No 195
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.26 E-value=1.6e-10 Score=122.73 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=90.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc--ccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI--IRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~--i~~ 365 (458)
|+|||||++.|+.+.|..|++++++.. .+ -+|++|+.... +......+.+.|..|+.. +.+
T Consensus 292 GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~-----~~~~~~~f~~~L~~rl~~~~i~l 366 (534)
T TIGR01817 292 GTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLE-----EAVAKGEFRADLYYRINVVPIFL 366 (534)
T ss_pred CeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHH-----HHHHcCCCCHHHHHHhcCCeeeC
Confidence 999999999999999999999998742 12 35555643211 012245677889999854 478
Q ss_pred CCCC--HHHHHHHHHHHH----HhcC--CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 366 QIYG--PAEMIQILAIRA----QVEE--IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 366 ~~~~--~~e~~~il~~~~----~~~~--~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
+|+. .+++..++..-+ +..+ +.+++++++.|..+.=-||+|.+.+.++++...+ ....|+.+++.
T Consensus 367 PpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 367 PPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred CCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 8886 466655554332 2222 6799999999999865799999999999887655 34568888764
No 196
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.7e-11 Score=116.59 Aligned_cols=110 Identities=20% Similarity=0.156 Sum_probs=74.6
Q ss_pred CCCCCccCCC-CCCccccccchHHHHHHHHH-HHHHH-------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 012719 25 KGLGLEANGN-AVPLAAGFVGQVEAREAAGL-VVDMI-------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVP 95 (458)
Q Consensus 25 ~~~~~~~~~~-~~~~l~~liG~~~~~~~l~~-l~~~~-------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p 95 (458)
.+..|.+... -..+|+-++-..+.|+.+.. +.+++ +.|+.=.|++|||||||||||++..|+|++|++++-
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIy 264 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIY 264 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceE
Confidence 3455555333 23789999988888887644 33333 345555799999999999999999999999997644
Q ss_pred EEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCcccc
Q 012719 96 FCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEET 146 (458)
Q Consensus 96 ~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~ 146 (458)
-.+++. ++....|+.+...+ ...+||+|+++|.-+..+.
T Consensus 265 dLeLt~-------v~~n~dLr~LL~~t-----~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 265 DLELTE-------VKLDSDLRHLLLAT-----PNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred Eeeecc-------ccCcHHHHHHHHhC-----CCCcEEEEeeccccccccc
Confidence 444433 22233355554433 3479999999998765443
No 197
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.20 E-value=9.9e-10 Score=119.14 Aligned_cols=143 Identities=16% Similarity=0.098 Sum_probs=96.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-------------CC-eEEEecCCcccc-ccCCCCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-------------SP-IVIFATNRGICN-IRGTDMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~-i~il~tn~~~~~-~~~~~~~~~~~l~~~l~sR~~~i- 363 (458)
|+++|||++.|++..+.+|+.+||... .. -+|.++|+.... ........--.|+++|+|||..+
T Consensus 559 GtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf 638 (915)
T PTZ00111 559 GVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIY 638 (915)
T ss_pred CeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEE
Confidence 999999999999999999999998642 23 466666664221 11112344557899999999544
Q ss_pred -ccCCCCHHHHHHHHHHHHH-----------------------------------------------------hcCCccC
Q 012719 364 -RTQIYGPAEMIQILAIRAQ-----------------------------------------------------VEEIVLD 389 (458)
Q Consensus 364 -~~~~~~~~e~~~il~~~~~-----------------------------------------------------~~~~~i~ 389 (458)
-++.++.+.=..+...+++ ...-.++
T Consensus 639 ~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls 718 (915)
T PTZ00111 639 LVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLS 718 (915)
T ss_pred EecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCC
Confidence 4555553322222111110 1122367
Q ss_pred HHHHHHHHH----Hhh--------------------------cC------CHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 390 EESLAHLGE----IAR--------------------------DT------SLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 390 ~~~l~~i~~----~~~--------------------------~g------~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
+++.+.|.+ +.. .+ .+|.+..+++.+.++|.+.=+..||.+||+
T Consensus 719 ~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~ 798 (915)
T PTZ00111 719 DEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADAL 798 (915)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHH
Confidence 888888754 121 01 279999999999999999999999999999
Q ss_pred HHHHhhhch
Q 012719 434 EVKALYLDA 442 (458)
Q Consensus 434 ~~~~~~~~~ 442 (458)
+|+.++-..
T Consensus 799 ~Ai~L~~~s 807 (915)
T PTZ00111 799 QAVQIVKSS 807 (915)
T ss_pred HHHHHHHHH
Confidence 999987533
No 198
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.19 E-value=7.3e-10 Score=110.11 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=83.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--cccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~ 365 (458)
|.|||||++.|+.+.|..|++++++.. .+ -+|.+|+.... ++.....+.++|..|+. .+.+
T Consensus 95 GtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~-----~~~~~g~fr~dL~~rl~~~~i~l 169 (329)
T TIGR02974 95 GTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLP-----ALAAEGRFRADLLDRLAFDVITL 169 (329)
T ss_pred CEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHH-----HHhhcCchHHHHHHHhcchhcCC
Confidence 999999999999999999999998753 23 35556642110 01123456788999994 4589
Q ss_pred CCCC--HHHHHHHHHH----HHHhcC----CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 366 QIYG--PAEMIQILAI----RAQVEE----IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 366 ~~~~--~~e~~~il~~----~~~~~~----~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+|+. .+++..++.. .+.+.+ ..+++++++.|..+.=-||+|.+.+.++++...+
T Consensus 170 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 170 PPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 9987 4666555543 333333 4689999999999876799999999999887765
No 199
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.18 E-value=2.9e-09 Score=102.28 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=93.0
Q ss_pred eEEEEcccchhc-------HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHH-
Q 012719 300 GVLFIDEVHMLD-------MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPA- 371 (458)
Q Consensus 300 ~Vl~IDE~~~l~-------~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~- 371 (458)
.+|+|||+|.+- .+..|+|..+.++...|++.++|...- ..-.-.+.+.|||..+.+++...+
T Consensus 147 rmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~---------~al~~D~QLa~RF~~~~Lp~W~~d~ 217 (302)
T PF05621_consen 147 RMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAY---------RALRTDPQLASRFEPFELPRWELDE 217 (302)
T ss_pred cEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHH---------HHhccCHHHHhccCCccCCCCCCCc
Confidence 899999999961 456777777777888888887774321 112234679999999988888744
Q ss_pred HHHHHHHHHHHhc-----CCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 372 EMIQILAIRAQVE-----EIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 372 e~~~il~~~~~~~-----~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
+....|..-.... ..--+++...+|...+ +|.......++..|...|...|.+.||.+.+..
T Consensus 218 ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s-~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 218 EFRRLLASFERALPLRKPSNLASPELARRIHERS-EGLIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 4545443322211 1124567778999999 999999999999999999999999999998875
No 200
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=4.9e-10 Score=111.97 Aligned_cols=111 Identities=26% Similarity=0.266 Sum_probs=78.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-----------CCC-eEEEecCCccccccCCCCCCCCCCCh--hHhhhhccc--
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-----------LSP-IVIFATNRGICNIRGTDMNSPHGIPL--DLLDRLVII-- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~--~l~sR~~~i-- 363 (458)
|.||+||+++|+++.|..|+++||+. +.+ -+|.+|+- +.+..+.. +|..|+..+
T Consensus 175 GtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~----------~l~~~~~~g~dl~~rl~~~~I 244 (403)
T COG1221 175 GTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE----------DLEEAVLAGADLTRRLNILTI 244 (403)
T ss_pred CEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc----------CHHHHHHhhcchhhhhcCcee
Confidence 99999999999999999999999973 222 45666642 33344455 777767433
Q ss_pred ccCCCCHH--HHH----HHHHHHHHhcCCc---cCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 364 RTQIYGPA--EMI----QILAIRAQVEEIV---LDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 364 ~~~~~~~~--e~~----~il~~~~~~~~~~---i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
+++|+.+- |+. ..++..+++.+.+ .+++++..+..+.--|++|.+.+++++++..+.
T Consensus 245 ~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 245 TLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred cCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 78877643 222 2233455555554 345788888877657999999999999988875
No 201
>PHA02244 ATPase-like protein
Probab=99.17 E-value=6.2e-10 Score=109.89 Aligned_cols=72 Identities=25% Similarity=0.161 Sum_probs=51.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc------------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS------------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQI 367 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~------------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~ 367 (458)
++|+|||++.++++++..|+.++++. +..-+|+++|+....- ...+.....+++++++||..+.|..
T Consensus 182 gvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~-~~~y~G~k~L~~AllDRFv~I~~dy 260 (383)
T PHA02244 182 GLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGA-DHIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred CEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCc-ccccCCCcccCHHHHhhcEEeeCCC
Confidence 89999999999999999999999742 2225666777632110 0011234678999999999999988
Q ss_pred CCHHH
Q 012719 368 YGPAE 372 (458)
Q Consensus 368 ~~~~e 372 (458)
+++.|
T Consensus 261 p~~~E 265 (383)
T PHA02244 261 DEKIE 265 (383)
T ss_pred CcHHH
Confidence 77433
No 202
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.17 E-value=2.3e-09 Score=111.40 Aligned_cols=136 Identities=19% Similarity=0.218 Sum_probs=101.2
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhcc---CCCeEEEecCCccccccCCCCCCCCCCCh-hHhhhhc--ccccCCCCHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESS---LSPIVIFATNRGICNIRGTDMNSPHGIPL-DLLDRLV--IIRTQIYGPA 371 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~i~il~tn~~~~~~~~~~~~~~~~l~~-~l~sR~~--~i~~~~~~~~ 371 (458)
...|++|||.+.|-...|+.|....+.+ .+.++|++-. ..|.-|+++.. ..-||++ .+.|.||+.+
T Consensus 508 ~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia--------NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~ 579 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA--------NTMDLPERLLMNRVSSRLGLTRICFQPYTHE 579 (767)
T ss_pred CCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec--------ccccCHHHHhccchhhhccceeeecCCCCHH
Confidence 3589999999999877777777766655 3345554441 12344444433 4668885 5599999999
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHH--hhcCCHHHHHHhhHHHHHHHhhhCC-------CCccHHHHHHHHHhhhch
Q 012719 372 EMIQILAIRAQVEEIVLDEESLAHLGEI--ARDTSLRHAVQLLYPASVVAKMNGR-------DSICKADVEEVKALYLDA 442 (458)
Q Consensus 372 e~~~il~~~~~~~~~~i~~~~l~~i~~~--~~~g~~r~a~~ll~~a~~~a~~~~~-------~~it~~~v~~~~~~~~~~ 442 (458)
++.+|+..+.+.. -.++.++++++++. +..||.|.|+.++++|..+|..... ..|++-||..|+.=+++.
T Consensus 580 qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 580 QLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 9999999887665 45788888888864 4459999999999999999976655 568999999998865554
No 203
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.15 E-value=1e-09 Score=115.10 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=83.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|.|||||++.|+...|..|++++++.. .+ -+|.+||.... +......+.+.|..|+..+ .+
T Consensus 324 GTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~-----~~v~~g~Fr~dL~yrL~~~~I~l 398 (538)
T PRK15424 324 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLE-----EDVRQGRFRRDLFYRLSILRLQL 398 (538)
T ss_pred CEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHH-----HHHhcccchHHHHHHhcCCeecC
Confidence 999999999999999999999998742 12 26666643210 1122334666777887544 78
Q ss_pred CCCCH--HHHHHHHHHH----HHhcCCccCHHHH-------HHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHH
Q 012719 366 QIYGP--AEMIQILAIR----AQVEEIVLDEESL-------AHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADV 432 (458)
Q Consensus 366 ~~~~~--~e~~~il~~~----~~~~~~~i~~~~l-------~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v 432 (458)
+|+.+ +|+..++..- +...+..++++++ +.+..+.=-||+|.+.++++++..++.......|+.+++
T Consensus 399 PPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 399 PPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 88863 5555444433 3345667888777 444444335899999999998887653222234665554
No 204
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.7e-09 Score=115.76 Aligned_cols=210 Identities=18% Similarity=0.238 Sum_probs=146.0
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHh-CCCcc-------EEEecCCccc--c
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQEL-GSKVP-------FCPMVGSEVY--S 106 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p-------~i~l~~~~~~--~ 106 (458)
..++.+||.++-...+ +.-+.+... .+-+|.|+||+|||.++..||..+ +.++| ++.++-+.+. .
T Consensus 167 gklDPvIGRd~EI~r~---iqIL~RR~K--NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGa 241 (786)
T COG0542 167 GKLDPVIGRDEEIRRT---IQILSRRTK--NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGA 241 (786)
T ss_pred CCCCCCcChHHHHHHH---HHHHhccCC--CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccc
Confidence 4589999998655432 222222222 478999999999999999999877 33344 4555544444 3
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
+|-|+-| .++.+.+..... .+.|+||||++.+.+.....+. .++ ...+.+
T Consensus 242 kyRGeFEeRlk~vl~ev~~~---~~vILFIDEiHtiVGAG~~~G~-a~D-------------------------AaNiLK 292 (786)
T COG0542 242 KYRGEFEERLKAVLKEVEKS---KNVILFIDEIHTIVGAGATEGG-AMD-------------------------AANLLK 292 (786)
T ss_pred cccCcHHHHHHHHHHHHhcC---CCeEEEEechhhhcCCCccccc-ccc-------------------------hhhhhH
Confidence 5777776 688888877653 3899999999999988764321 110 233456
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHh
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQ 265 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~ 265 (458)
+....|..-.|.+||-.
T Consensus 293 PaLARGeL~~IGATT~~--------------------------------------------------------------- 309 (786)
T COG0542 293 PALARGELRCIGATTLD--------------------------------------------------------------- 309 (786)
T ss_pred HHHhcCCeEEEEeccHH---------------------------------------------------------------
Confidence 66778888888888710
Q ss_pred hccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCC
Q 012719 266 MMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTD 345 (458)
Q Consensus 266 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~ 345 (458)
++|+ |++.
T Consensus 310 -----------EYRk--------~iEK----------------------------------------------------- 317 (786)
T COG0542 310 -----------EYRK--------YIEK----------------------------------------------------- 317 (786)
T ss_pred -----------HHHH--------Hhhh-----------------------------------------------------
Confidence 0110 1111
Q ss_pred CCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHhhcC-----CHHHHHHhhHHHH
Q 012719 346 MNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQ----VEEIVLDEESLAHLGEIARDT-----SLRHAVQLLYPAS 416 (458)
Q Consensus 346 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~----~~~~~i~~~~l~~i~~~~~~g-----~~r~a~~ll~~a~ 416 (458)
.++|-.||+.+.+..|+.++...||+-... ..++.|+++|+...+.++.+. =|-.|+.+++.|+
T Consensus 318 -------D~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~ 390 (786)
T COG0542 318 -------DAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAG 390 (786)
T ss_pred -------chHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHH
Confidence 124778999999999999999999986544 457899999999999998332 1678999999998
Q ss_pred HHHhhh
Q 012719 417 VVAKMN 422 (458)
Q Consensus 417 ~~a~~~ 422 (458)
....+.
T Consensus 391 a~~~l~ 396 (786)
T COG0542 391 ARVRLE 396 (786)
T ss_pred HHHHhc
Confidence 776554
No 205
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.14 E-value=1.7e-09 Score=113.39 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=88.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-----------C-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--cccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-----------P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-----------~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~ 365 (458)
|.|||||++.|+...|..|++++++... + -+|.+|+.... +......+.+.|..|+. .+.+
T Consensus 309 GTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~-----~~v~~g~fr~dL~~rL~~~~I~l 383 (526)
T TIGR02329 309 GTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALT-----TAVQQGRFRRDLFYRLSILRIAL 383 (526)
T ss_pred ceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHH-----HHhhhcchhHHHHHhcCCcEEeC
Confidence 9999999999999999999999987421 1 25556643210 11223455667777874 4488
Q ss_pred CCCCH--HHHHHHHH----HHHHhcCCccCHHHHHH-------HHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHH
Q 012719 366 QIYGP--AEMIQILA----IRAQVEEIVLDEESLAH-------LGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADV 432 (458)
Q Consensus 366 ~~~~~--~e~~~il~----~~~~~~~~~i~~~~l~~-------i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v 432 (458)
||+.+ +++..++. ..+...++.++++++.. |..+.=-||+|.+.+.++++...+.......|+.+++
T Consensus 384 PPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l 463 (526)
T TIGR02329 384 PPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVL 463 (526)
T ss_pred CCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHh
Confidence 88864 55554443 33444567799999888 6666556899999999998877653222346888876
Q ss_pred HH
Q 012719 433 EE 434 (458)
Q Consensus 433 ~~ 434 (458)
..
T Consensus 464 ~~ 465 (526)
T TIGR02329 464 RA 465 (526)
T ss_pred hh
Confidence 53
No 206
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.14 E-value=7.5e-10 Score=120.08 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=89.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|.|||||++.|+...|..|++++++.. .. -+|.+|+.... +......+.+.|..|+..+ .+
T Consensus 418 GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~-----~~~~~~~f~~dL~~~l~~~~i~l 492 (638)
T PRK11388 418 GTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLA-----MLVEQNRFSRQLYYALHAFEITI 492 (638)
T ss_pred CEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHH-----HHHhcCCChHHHhhhhceeEEeC
Confidence 999999999999999999999998752 12 36666653210 1112356667787887544 78
Q ss_pred CCCCH--HHHHHHHHHHHH----hc--CCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHH
Q 012719 366 QIYGP--AEMIQILAIRAQ----VE--EIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEV 435 (458)
Q Consensus 366 ~~~~~--~e~~~il~~~~~----~~--~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~ 435 (458)
+|+.+ +++..++..... .. .+.+++++++.|..+.=-|++|.+.+.++.+...+ ....|+.+++...
T Consensus 493 PpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~ 567 (638)
T PRK11388 493 PPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEH 567 (638)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchh
Confidence 88864 455555443332 22 35689999999999876799999999999877654 3345777776543
No 207
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-09 Score=111.09 Aligned_cols=125 Identities=23% Similarity=0.216 Sum_probs=89.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-----------C-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-----------P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-----------~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|.||+|||..|+.+.|..||+++++... + =+|.+||+--. +.-....+.++|.-|+.++ .+
T Consensus 237 GTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~-----~~v~~G~FReDLyyRLnV~~i~i 311 (464)
T COG2204 237 GTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE-----EEVAAGRFREDLYYRLNVVPLRL 311 (464)
T ss_pred ceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH-----HHHHcCCcHHHHHhhhccceecC
Confidence 9999999999999999999999997421 2 26667754210 1223446777888899776 77
Q ss_pred CCCC--HHHH----HHHHHHHHHhcCC---ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHH
Q 012719 366 QIYG--PAEM----IQILAIRAQVEEI---VLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADV 432 (458)
Q Consensus 366 ~~~~--~~e~----~~il~~~~~~~~~---~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v 432 (458)
+|+. .+++ ...+++.++..+. .++++++..+..+.=-||.|.+.+.++++..++ ..+.|+.+++
T Consensus 312 PpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 312 PPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred CcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 7774 2333 3444555555543 699999999999876799999999999887766 3334555553
No 208
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=1.6e-10 Score=103.75 Aligned_cols=38 Identities=42% Similarity=0.536 Sum_probs=31.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CCccEEEecCCcc
Q 012719 67 RALLLAGPPGTGKTALALGICQELG--SKVPFCPMVGSEV 104 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~--~~~p~i~l~~~~~ 104 (458)
.++||+||+|||||.+|+++|+.+. .+.+++.++.+++
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 5899999999999999999999997 2336777766555
No 209
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.08 E-value=1.9e-09 Score=109.69 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=87.2
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhcc-----------CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--c
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESS-----------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--R 364 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~ 364 (458)
+|-+|+|||..|+...|..||+++++. +.+ -+|-+||+... ++-....+..+|.=|+.++ +
T Consensus 341 gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~-----~~i~~G~FReDLYYRLNV~~i~ 415 (560)
T COG3829 341 GGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE-----KMIAEGTFREDLYYRLNVIPIT 415 (560)
T ss_pred CCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH-----HHHhcCcchhhheeeeceeeec
Confidence 399999999999999999999999974 223 37777875321 1223345556677788766 7
Q ss_pred cCCCC--HHHHHHHHHHH----HHhc--CCc-cCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 365 TQIYG--PAEMIQILAIR----AQVE--EIV-LDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 365 ~~~~~--~~e~~~il~~~----~~~~--~~~-i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
++|+- .+++......- .... .+. ++++++..+..+.=-|+.|.+.++++++..++. ....|+.+|.-
T Consensus 416 iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 416 IPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred CCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 77774 34443333222 2222 333 899999999998767999999999998887542 22336655554
No 210
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.08 E-value=5.9e-09 Score=103.64 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=81.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--cccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~ 365 (458)
|.|||||++.|+...|..|++.+++.. .. -+|++++.... ++.....+.++|..|+. .+.+
T Consensus 102 GtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~-----~l~~~g~f~~dL~~~l~~~~i~l 176 (326)
T PRK11608 102 GTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP-----AMVAEGKFRADLLDRLAFDVVQL 176 (326)
T ss_pred CeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHH-----HHHHcCCchHHHHHhcCCCEEEC
Confidence 899999999999999999999998642 12 34545532100 01123567788999984 4488
Q ss_pred CCCCH--HHHHHHHHH----HHHhcC----CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 366 QIYGP--AEMIQILAI----RAQVEE----IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 366 ~~~~~--~e~~~il~~----~~~~~~----~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+|+.+ +|+..++.. .+...+ ..++++++..|..+.=-||+|.+.+.++.+...+
T Consensus 177 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 88863 455544433 344433 3589999999999876799999999999887654
No 211
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.07 E-value=3e-09 Score=112.29 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=86.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--cccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~ 365 (458)
|.|||||++.|+++.|..|++++++.. .+ -+|++|+.... ++.....+.+.|..|+. .+.+
T Consensus 300 GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~-----~l~~~g~f~~dL~~rL~~~~i~l 374 (520)
T PRK10820 300 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV-----ELVQKGEFREDLYYRLNVLTLNL 374 (520)
T ss_pred CEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHH-----HHHHcCCccHHHHhhcCeeEEeC
Confidence 899999999999999999999998742 12 35555532110 11123456678889974 4488
Q ss_pred CCCCH--HHHHHH----HHHHHHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHH
Q 012719 366 QIYGP--AEMIQI----LAIRAQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADV 432 (458)
Q Consensus 366 ~~~~~--~e~~~i----l~~~~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v 432 (458)
+|+.+ +++..+ +...+.+.+ ..+++++++.|..+.=-|++|.+.+.++++...+ ....|+.+++
T Consensus 375 PpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 375 PPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred CCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 88864 455433 334444444 3699999999998865799999999999887654 2335666664
No 212
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=6.1e-09 Score=103.88 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=96.9
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC---e-EEEecCCccccccCCCCCCCCCCChhHhhhhc----ccccCCCCH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP---I-VIFATNRGICNIRGTDMNSPHGIPLDLLDRLV----IIRTQIYGP 370 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~---i-~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~----~i~~~~~~~ 370 (458)
.-|+++||+|.|....+..|..+.|.+.-| + +|..+|.- ....++.|.|..|+. .+.|+||+.
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl---------DlTdR~LprL~~~~~~~P~~l~F~PYTk 327 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL---------DLTDRFLPRLNLDLTIKPKLLVFPPYTK 327 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhh---------hHHHHHhhhhhhccCCCCceeeecCCCH
Confidence 378899999999988888888887766433 3 33333321 233455666666663 459999999
Q ss_pred HHHHHHHHHHHHhcCCc-cCHHHHHHHHHH--hhcCCHHHHHHhhHHHHHHHhhhCCC----------------CccHHH
Q 012719 371 AEMIQILAIRAQVEEIV-LDEESLAHLGEI--ARDTSLRHAVQLLYPASVVAKMNGRD----------------SICKAD 431 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~-i~~~~l~~i~~~--~~~g~~r~a~~ll~~a~~~a~~~~~~----------------~it~~~ 431 (458)
++|.+||+.+...+... +-+.++++++.. +..||+|.|+..+++|..++...++. .|..+|
T Consensus 328 ~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~ 407 (529)
T KOG2227|consen 328 DQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEH 407 (529)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHH
Confidence 99999999998877654 444688888865 33599999999999999999866553 245677
Q ss_pred HHHHHHhhhch
Q 012719 432 VEEVKALYLDA 442 (458)
Q Consensus 432 v~~~~~~~~~~ 442 (458)
|..++.-+...
T Consensus 408 va~viSk~~~s 418 (529)
T KOG2227|consen 408 VAAVISKVDGS 418 (529)
T ss_pred HHHHhhhhccC
Confidence 77776644443
No 213
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.03 E-value=9.5e-09 Score=104.25 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=79.3
Q ss_pred eEEEEcccchhc-----HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhh--hcccccCCCCHHH
Q 012719 300 GVLFIDEVHMLD-----MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDR--LVIIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~-----~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR--~~~i~~~~~~~~e 372 (458)
++++|||+-... ...++.|......+..|++++.|+...+.+. +.-...+..+..+ +..+.|.|+..-=
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~n----nq~rlf~~d~q~~~ri~~IsFNPIa~T~ 271 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNN----NQDRLFPKDIQEEPRISNISFNPIAPTI 271 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCc----chhhhchhhhhhccCcceEeecCCcHHH
Confidence 788899876653 2245555555566677877777764433222 2222333344444 4567999999999
Q ss_pred HHHHHHHHHHhcCCccC------HHHHHHHHHHhhcCCHHHHHHhhHHH
Q 012719 373 MIQILAIRAQVEEIVLD------EESLAHLGEIARDTSLRHAVQLLYPA 415 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~------~~~l~~i~~~~~~g~~r~a~~ll~~a 415 (458)
|.+.|+.+|..+....+ ...++.|+.-+ .||+|.|++.|+..
T Consensus 272 MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s-~GDIRsAInsLQls 319 (634)
T KOG1970|consen 272 MKKFLKRICRIEANKKSGIKVPDTAEVELICQGS-GGDIRSAINSLQLS 319 (634)
T ss_pred HHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc-CccHHHHHhHhhhh
Confidence 99999999998877766 67788888888 99999999999966
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.01 E-value=1e-08 Score=88.39 Aligned_cols=57 Identities=40% Similarity=0.398 Sum_probs=41.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhh-cccccC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL-VIIRTQ 366 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~-~~i~~~ 366 (458)
+++++||++.++++....++..++... .. .+|+++|.. ....+.+.+.+|| ..+.++
T Consensus 86 ~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~----------~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 86 GVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP----------LLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred eEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc----------ccCCcChhHHhhhccEeecC
Confidence 899999999998888888888888763 33 555566421 1137788999999 444554
No 215
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.01 E-value=9.8e-10 Score=95.33 Aligned_cols=53 Identities=26% Similarity=0.314 Sum_probs=36.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-------------CC-------CeEEEecCCccccccCCCCCCCCCCChhHhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-------------LS-------PIVIFATNRGICNIRGTDMNSPHGIPLDLLDR 359 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~-------~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR 359 (458)
.+++|||+++.++++++.|+.++|+. +. ..+|.++|+.. .....++++|+||
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~--------~~~~~l~~al~~R 138 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD--------KGRKELSPALLDR 138 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------TTTTCHHHHTT
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC--------CCcCcCCHHHHhh
Confidence 89999999999999999999999852 11 24555554331 2345899999999
Q ss_pred h
Q 012719 360 L 360 (458)
Q Consensus 360 ~ 360 (458)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 7
No 216
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.00 E-value=3.9e-08 Score=90.34 Aligned_cols=64 Identities=23% Similarity=0.246 Sum_probs=48.7
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC-ccEEEecC
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSK-VPFCPMVG 101 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~-~p~i~l~~ 101 (458)
-.+++|+|-+.+++++-.=...+-.|.+. .|+||+|..|||||++++|+-.++..+ ..+++++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pA-NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPA-NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcc-cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 56999999999999775444555666544 899999999999999999998877432 23455444
No 217
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=1e-08 Score=103.23 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=83.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|-||+|||..|+.+.|..||+++++.- .+ -+|.+||+--. .+-.-..+..+|.=|+-++ .+
T Consensus 319 GTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~-----~~V~~G~FRaDLYyRLsV~Pl~l 393 (550)
T COG3604 319 GTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLE-----EMVRDGEFRADLYYRLSVFPLEL 393 (550)
T ss_pred CeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHH-----HHHHcCcchhhhhhcccccccCC
Confidence 899999999999999999999999741 12 37888875311 1122345556677777666 67
Q ss_pred CCCC-----HHHHHHHHHHHHH-hcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 366 QIYG-----PAEMIQILAIRAQ-VEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 366 ~~~~-----~~e~~~il~~~~~-~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+|+- --.+...+.+.+. ..| +.+++++++.+..+.=-|+.|.+.+.+++|...|
T Consensus 394 PPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 394 PPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 7763 2344555544443 333 5799999999998876799999999999999877
No 218
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.00 E-value=1.8e-08 Score=106.26 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=82.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc--ccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI--IRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~--i~~ 365 (458)
|.|||||++.|+.+.|..|++++++.. .+ -+|++|++... +......+.+.|..|+.. +.+
T Consensus 283 GtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~-----~~~~~~~f~~dL~~rl~~~~i~l 357 (509)
T PRK05022 283 GTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLR-----EEVRAGRFRADLYHRLSVFPLSV 357 (509)
T ss_pred CEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHH-----HHHHcCCccHHHHhcccccEeeC
Confidence 899999999999999999999998642 12 35556643210 112234577788888854 478
Q ss_pred CCCCH--HHHHHHHH----HHHHhc---CCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 366 QIYGP--AEMIQILA----IRAQVE---EIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 366 ~~~~~--~e~~~il~----~~~~~~---~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
+|+.+ +++..++. ..+.+. .+.++++++..|..+.=-||+|.+.+.++++...+.
T Consensus 358 PpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 358 PPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 88863 45544333 333333 367999999999998767999999999998887663
No 219
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.98 E-value=1.1e-07 Score=88.53 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=94.0
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhh---ccCCCe-EEEecCCccccccCCCCCCCCCCC--hhHhhhhcc-cccCCCCHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALE---SSLSPI-VIFATNRGICNIRGTDMNSPHGIP--LDLLDRLVI-IRTQIYGPA 371 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE---~~~~~i-~il~tn~~~~~~~~~~~~~~~~l~--~~l~sR~~~-i~~~~~~~~ 371 (458)
+-++++||+|.+..+...+|....+ ++..++ ++++..+.-+ +.+ +.+ ..+..||.+ +.++|++.+
T Consensus 132 ~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~-------~~l-r~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 132 PVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLR-------PRL-RLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred CeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccc-------hhh-chHHHHhhhheEEEEEecCCcChH
Confidence 3688999999999998888887765 344441 3333322110 111 111 246679988 899999999
Q ss_pred HHHHHHHHHHHhcCCc---cCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 372 EMIQILAIRAQVEEIV---LDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 372 e~~~il~~~~~~~~~~---i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
+...+++.+.+..+.. ++++++.++...+ +|.||...+++..|...|...|.+.|+...++
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s-qg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS-QGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHh-ccchHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999999998876543 8899999999999 99999888888888888877888888877664
No 220
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.2e-08 Score=108.62 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=70.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCC----------------------
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTD---------------------- 345 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~---------------------- 345 (458)
.|+++|||+..++..++.|++++++.+ .. |||+++|.+.+.+....
T Consensus 662 sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~ 741 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQ 741 (898)
T ss_pred eEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhh
Confidence 899999999999999999999999752 23 88888888655221110
Q ss_pred ------CCCCCCCChhHhhhhccc-ccCCCCHHHHHHHHHHHHH-------hc--CCccCHHHHHHHHHHh
Q 012719 346 ------MNSPHGIPLDLLDRLVII-RTQIYGPAEMIQILAIRAQ-------VE--EIVLDEESLAHLGEIA 400 (458)
Q Consensus 346 ------~~~~~~l~~~l~sR~~~i-~~~~~~~~e~~~il~~~~~-------~~--~~~i~~~~l~~i~~~~ 400 (458)
......+.|+++.|+..+ -|.+++.+++.+++..... .. -..+++.+.++++...
T Consensus 742 v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~ 812 (898)
T KOG1051|consen 742 VSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKG 812 (898)
T ss_pred hhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcC
Confidence 111156678899999766 8999998888877765432 11 1345666666666543
No 221
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.91 E-value=3.2e-08 Score=108.20 Aligned_cols=115 Identities=23% Similarity=0.270 Sum_probs=79.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc--ccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI--IRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~--i~~ 365 (458)
|+|||||++.|+.+.|..|++.+++.. .. -+|.+|+.... .+.....+...+..|+.. +.+
T Consensus 472 GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~-----~~~~~~~f~~~L~~~l~~~~i~l 546 (686)
T PRK15429 472 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK-----KMVADREFRSDLYYRLNVFPIHL 546 (686)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHH-----HHHHcCcccHHHHhccCeeEEeC
Confidence 999999999999999999999998642 22 35555543210 011233456667777643 478
Q ss_pred CCCCH--HHHHHHHH----HHHHhcC--C-ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 366 QIYGP--AEMIQILA----IRAQVEE--I-VLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 366 ~~~~~--~e~~~il~----~~~~~~~--~-~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+|+.+ +++..+++ ..+...+ + .+++++++.|..+.=-||+|.+.+.++++...+
T Consensus 547 PpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 547 PPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 88863 55544443 3333333 2 489999999998876799999999999887654
No 222
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=2.9e-08 Score=93.22 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=63.7
Q ss_pred eEEEEcccchhc------HHHHHHHHHHhhcc--CCC--eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCC
Q 012719 300 GVLFIDEVHMLD------MECFSYLNRALESS--LSP--IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYG 369 (458)
Q Consensus 300 ~Vl~IDE~~~l~------~~~~~~Ll~~lE~~--~~~--i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~ 369 (458)
.|++|||++.+. +.....|...++.. ..+ ++++++..+.. .....-..++..|+..+.+++++
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~-------~~~~~~~~~~~~~~~~~~l~~l~ 192 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM-------EEFLDDKSPLFGRFSHIELKPLS 192 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHH-------HHTT-TTSTTTT---EEEE----
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHH-------HHhhcccCccccccceEEEeeCC
Confidence 799999999998 56777788888772 223 34444421110 01112234578899889999999
Q ss_pred HHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHhhcCCHHHHHH
Q 012719 370 PAEMIQILAIRAQVEEIVL--DEESLAHLGEIARDTSLRHAVQ 410 (458)
Q Consensus 370 ~~e~~~il~~~~~~~~~~i--~~~~l~~i~~~~~~g~~r~a~~ 410 (458)
.++..+.+...+... ..+ +++.++.+...+ .|.|++...
T Consensus 193 ~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-gG~P~~l~~ 233 (234)
T PF01637_consen 193 KEEAREFLKELFKEL-IKLPFSDEDIEEIYSLT-GGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHHHHHCC-------HHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHh-CCCHHHHhc
Confidence 999999999988776 654 999999999999 999998653
No 223
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.85 E-value=1.6e-07 Score=97.72 Aligned_cols=125 Identities=21% Similarity=0.238 Sum_probs=84.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|.|||||++.|+.+.|..|++++++.. .. -+|++++.... +......+.+.|..|+..+ .+
T Consensus 235 gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-----~~~~~~~~~~~L~~~l~~~~i~l 309 (445)
T TIGR02915 235 GTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLK-----RMIAEGTFREDLFYRIAEISITI 309 (445)
T ss_pred CEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHH-----HHHHcCCccHHHHHHhccceecC
Confidence 999999999999999999999998642 12 35555542110 0111245677788888544 77
Q ss_pred CCCC--HHHHHHHHH----HHHHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHH
Q 012719 366 QIYG--PAEMIQILA----IRAQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADV 432 (458)
Q Consensus 366 ~~~~--~~e~~~il~----~~~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v 432 (458)
+|+. .+++..++. ..+...+ ..+++++++.|..+.=-|++|.+.+.++++...+. ...|+.+++
T Consensus 310 PpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 310 PPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred CCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 7775 344443333 3333333 46999999999988767999999999998876552 334665554
No 224
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.83 E-value=9.4e-08 Score=97.02 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=35.1
Q ss_pred cccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 39 AAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 39 l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
++++.+-+...+.+ +..+.. +++++|+||||||||++|+.+|..+..
T Consensus 174 l~d~~i~e~~le~l---~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETI---LKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHH---HHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 66777766665533 333332 469999999999999999999998853
No 225
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.81 E-value=8.3e-08 Score=86.00 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=40.3
Q ss_pred ccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcc
Q 012719 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEV 104 (458)
Q Consensus 42 liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~ 104 (458)
++|.......+. +.++.-...+.++|++|++||||+.+|+++-.... .+-||+.++.+.+
T Consensus 1 liG~s~~m~~~~---~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLR---EQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHH---HHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHH---HHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 466666655444 33333333346899999999999999999988653 3578999988765
No 226
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.80 E-value=1.6e-07 Score=98.36 Aligned_cols=126 Identities=20% Similarity=0.208 Sum_probs=86.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--cccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~ 365 (458)
|.|||||++.|+.+.|..|++++++.. .+ -+|++|+.... +.-....+.++|..|+. .+.+
T Consensus 234 Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-----~~~~~~~~~~~L~~~l~~~~i~~ 308 (469)
T PRK10923 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLE-----QRVQEGKFREDLFHRLNVIRVHL 308 (469)
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHH-----HHHHcCCchHHHHHHhcceeecC
Confidence 899999999999999999999998742 12 35555532110 01123457788999984 4478
Q ss_pred CCCCH--HHHHHHHHH----HHHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 366 QIYGP--AEMIQILAI----RAQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 366 ~~~~~--~e~~~il~~----~~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
+|+.+ +++..++.. .+...+ ..++++++..|..+.=-|++|.+.+.++++...+ ....|+.+++.
T Consensus 309 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~ 382 (469)
T PRK10923 309 PPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLP 382 (469)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 88853 455444433 233333 2589999999999876799999999999887665 23457777763
No 227
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.78 E-value=1.6e-08 Score=96.89 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=76.0
Q ss_pred CCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhc------CCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 347 NSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVE------EIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 347 ~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~------~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
|....+.++|+|||+++.|.+++.+++.++|++.+... .+.++++++++|+..| +||.|.++++|+.+...+.
T Consensus 18 NP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a-~GDaR~aLN~LE~a~~~~~ 96 (300)
T PRK14700 18 NPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN-EGDCRKILNLLERMFLIST 96 (300)
T ss_pred CccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc-CCHHHHHHHHHHHHHhhcc
Confidence 66778999999999999999999999999999888642 3689999999999999 9999999999998765432
Q ss_pred hhCCCCccHHHHHHHHH
Q 012719 421 MNGRDSICKADVEEVKA 437 (458)
Q Consensus 421 ~~~~~~it~~~v~~~~~ 437 (458)
..+...||.++|++++.
T Consensus 97 ~~~~~~it~~~~~~~~~ 113 (300)
T PRK14700 97 RGDEIYLNKELFDQAVG 113 (300)
T ss_pred ccCCCccCHHHHHHHHh
Confidence 22223499999998765
No 228
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-07 Score=98.89 Aligned_cols=173 Identities=27% Similarity=0.381 Sum_probs=121.2
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccc
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEV 138 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~ 138 (458)
..+..++++++++||||+|||++++++|.. + .++..+++++..+++.+..+ .+...|..+.... |+++++||+
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~ii~~d~~ 85 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-G--AEFLSINGPEILSKYVGESELRLRELFEEAEKLA---PSIIFIDEI 85 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc-c--CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC---CCeEeechh
Confidence 345566789999999999999999999999 4 34488899999999999988 6999999998744 899999999
Q ss_pred cccCccccCCccCCch-hhHHHHHHhhccccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCcccccccccc
Q 012719 139 TELSPEETESITGGYG-KSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFD 217 (458)
Q Consensus 139 d~l~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d 217 (458)
+.+++.+.. ...... +.+.+++.. ++.+. .+. +.+.+.++.......+.....+|+
T Consensus 86 ~~~~~~~~~-~~~~~~~~v~~~l~~~----------------~d~~~-----~~~-v~~~~~~~~~~~~~~a~~~~~~~~ 142 (494)
T COG0464 86 DALAPKRSS-DQGEVERRVVAQLLAL----------------MDGLK-----RGQ-VIVIGATNRPDGLDPAKRRPGRFD 142 (494)
T ss_pred hhcccCccc-cccchhhHHHHHHHHh----------------ccccc-----CCc-eEEEeecCCccccChhHhCccccc
Confidence 999999887 333333 334444322 22222 445 455456667766666677777776
Q ss_pred ccccccccCCCcchHHHHHHHhhcC----H---hhHHHHhcCCCCh--hhHHHHHHh
Q 012719 218 LEAEEYVPLPKGEVHKKKEIVQDVT----L---HDLDAANARPQGG--QDILSLMGQ 265 (458)
Q Consensus 218 ~~~~~~v~~p~~~~~~r~~i~~~~~----l---~~l~~~~~~~~g~--adl~~l~~~ 265 (458)
.+.....+ +...+.++....+ . .++..++..+.|+ +++..++..
T Consensus 143 ~~~~~~~~----~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 195 (494)
T COG0464 143 REIEVNLP----DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKE 195 (494)
T ss_pred eeeecCCC----CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHH
Confidence 65444443 2333444443322 2 2677888899887 888887743
No 229
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.77 E-value=3.3e-09 Score=105.61 Aligned_cols=142 Identities=24% Similarity=0.280 Sum_probs=86.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-------------C-CeEEEecCCccccc-cCCCCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-------------S-PIVIFATNRGICNI-RGTDMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~-~i~il~tn~~~~~~-~~~~~~~~~~l~~~l~sR~~~i- 363 (458)
||+.|||++.|+.+..++|..+||... . .-++.++|+..... .......--.++++|+|||..+
T Consensus 123 GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif 202 (331)
T PF00493_consen 123 GICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIF 202 (331)
T ss_dssp SEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEE
T ss_pred ceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEE
Confidence 999999999999999999999999631 1 23556666653211 1112223336888999999766
Q ss_pred -ccCCCCHHH---HHH-HHHHH------------------------------HHhcCCccCHHHHHHHHHHhhc------
Q 012719 364 -RTQIYGPAE---MIQ-ILAIR------------------------------AQVEEIVLDEESLAHLGEIARD------ 402 (458)
Q Consensus 364 -~~~~~~~~e---~~~-il~~~------------------------------~~~~~~~i~~~~l~~i~~~~~~------ 402 (458)
-.++++.+. +.+ ++..+ -......+++++.+.|...-..
T Consensus 203 ~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~ 282 (331)
T PF00493_consen 203 LLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESK 282 (331)
T ss_dssp CC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHH
T ss_pred EeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccc
Confidence 345555322 222 22111 1123345788888888754211
Q ss_pred -------CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 403 -------TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 403 -------g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
-.+|.+..+++.+.++|.+.-+..|+.+||..|+.+|-.
T Consensus 283 ~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 283 SNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp CHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 136777889999999999999999999999999998754
No 230
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.74 E-value=2.1e-07 Score=99.01 Aligned_cols=146 Identities=24% Similarity=0.237 Sum_probs=94.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCe--------------EEEecCCccc-cccCCCCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPI--------------VIFATNRGIC-NIRGTDMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i--------------~il~tn~~~~-~~~~~~~~~~~~l~~~l~sR~~~i- 363 (458)
||.-|||++.|+....++|..+||....++ ++.++|+..- -........--+||++|+|||..+
T Consensus 385 Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLif 464 (682)
T COG1241 385 GVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIF 464 (682)
T ss_pred CEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeE
Confidence 999999999999999999999999642211 2233333211 001111222336789999999766
Q ss_pred -ccCCCCHH---HHH-HHHHHHH-------------------------------Hh-cCCccCHHHHHHHHHH----hhc
Q 012719 364 -RTQIYGPA---EMI-QILAIRA-------------------------------QV-EEIVLDEESLAHLGEI----ARD 402 (458)
Q Consensus 364 -~~~~~~~~---e~~-~il~~~~-------------------------------~~-~~~~i~~~~l~~i~~~----~~~ 402 (458)
-...++++ ++. +++..+. ++ .--.+++++.+.|.+. ...
T Consensus 465 vl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~ 544 (682)
T COG1241 465 VLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKK 544 (682)
T ss_pred EecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhc
Confidence 33334332 222 2333221 11 1135788888888653 111
Q ss_pred C-----------CHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHH
Q 012719 403 T-----------SLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSS 445 (458)
Q Consensus 403 g-----------~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~ 445 (458)
+ ..|.+..+++.+-++|.++=++.++.+||.+|..++-.....
T Consensus 545 ~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~ 598 (682)
T COG1241 545 SALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKT 598 (682)
T ss_pred cccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 1 268899999999999999989999999999999987765543
No 231
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.73 E-value=5.6e-07 Score=94.03 Aligned_cols=127 Identities=21% Similarity=0.263 Sum_probs=91.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--cccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~ 365 (458)
|.|||||++.|+.+.|..|++++++.. .+ -+|++++.... ++-....+.+.|..|+. .+.+
T Consensus 230 gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-----~~~~~~~f~~~L~~rl~~~~i~l 304 (463)
T TIGR01818 230 GTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLE-----ALVRQGKFREDLFHRLNVIRIHL 304 (463)
T ss_pred CeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHH-----HHHHcCCcHHHHHHHhCcceecC
Confidence 899999999999999999999998742 12 35556643210 01123456678888985 4488
Q ss_pred CCCC--HHHHHHHHHHH----HHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 366 QIYG--PAEMIQILAIR----AQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 366 ~~~~--~~e~~~il~~~----~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
+|+. .+++..++... +...+ ..++++++..|..+.=-||+|.+.+.++++...+ ....|+.+++..
T Consensus 305 PpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~ 379 (463)
T TIGR01818 305 PPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPA 379 (463)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchH
Confidence 8887 67776665543 33333 4689999999999876799999999999887765 234577777653
No 232
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.72 E-value=4.5e-07 Score=94.56 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=84.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|+|||||++.|+...|..|++++++.. .. -+|++|+.... .......+.+.+..|+..+ .+
T Consensus 239 gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~-----~~~~~g~~~~~l~~~l~~~~i~~ 313 (457)
T PRK11361 239 GTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQ-----AMVKEGTFREDLFYRLNVIHLIL 313 (457)
T ss_pred CEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHH-----HHHHcCCchHHHHHHhccceecC
Confidence 899999999999999999999998642 12 35556643210 0012345667788887544 67
Q ss_pred CCCC--HHHHHHHHH----HHHHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 366 QIYG--PAEMIQILA----IRAQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 366 ~~~~--~~e~~~il~----~~~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
+|+. .+++..++. ..+...+ ..+++++++.+..+.=-|++|.+.+.++.+...+ ....|+.+++.
T Consensus 314 ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~ 387 (457)
T PRK11361 314 PPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLP 387 (457)
T ss_pred CChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHCh
Confidence 7775 344443332 2233222 4699999999998866799999999999877654 33457776664
No 233
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.71 E-value=4.3e-08 Score=109.00 Aligned_cols=99 Identities=26% Similarity=0.260 Sum_probs=68.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhcc----cCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccc--------
Q 012719 40 AGFVGQVEAREAAGLVVDMIRQKK----MAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYS-------- 106 (458)
Q Consensus 40 ~~liG~~~~~~~l~~l~~~~~~~~----~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~-------- 106 (458)
..|+||+++...+...+...+.|. .|..++||+||||||||++|++||+.+. ...+++.++.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 678999999998877665544432 2224689999999999999999999883 345788888776532
Q ss_pred ----hhhhhhH--HHHHHHHHHHhccccCCceEEEccccccCcc
Q 012719 107 ----SEVKKTE--ILMENFRRAIGLRIKENKEVYEGEVTELSPE 144 (458)
Q Consensus 107 ----~~~~~~~--~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~ 144 (458)
+|+|..+ .+.+.++ .+..+|+++||+|.+.+.
T Consensus 589 g~~~gyvg~~~~~~l~~~~~------~~p~~VvllDeieka~~~ 626 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVR------KKPYTVVLFDEIEKAHPD 626 (821)
T ss_pred CCCCcccCcCccchHHHHHH------hCCCeEEEECChhhCCHH
Confidence 2333322 3443333 233599999999987533
No 234
>PRK15115 response regulator GlrR; Provisional
Probab=98.66 E-value=7.7e-07 Score=92.48 Aligned_cols=127 Identities=19% Similarity=0.217 Sum_probs=83.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-----------C-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--cccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-----------P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-----------~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~ 365 (458)
|.|||||++.|+++.|..|++.+++... . -+|++|+.... .......+.+.+..|+. .+.+
T Consensus 230 gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~-----~~~~~~~f~~~l~~~l~~~~i~l 304 (444)
T PRK15115 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLP-----KAMARGEFREDLYYRLNVVSLKI 304 (444)
T ss_pred CEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHH-----HHHHcCCccHHHHHhhceeeecC
Confidence 8999999999999999999999987531 2 35555532110 01112245566666664 3366
Q ss_pred CCCCH--HHHHHHHH----HHHHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 366 QIYGP--AEMIQILA----IRAQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 366 ~~~~~--~e~~~il~----~~~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
+|+.+ +++..++. ..+...+ ..+++++++.|..+.=-||+|.+.+.++++...+ ....|+.+++..
T Consensus 305 PpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 379 (444)
T PRK15115 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQ 379 (444)
T ss_pred CChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhh
Confidence 66642 44443333 3333333 2589999999999876799999999999887654 344577777653
No 235
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.60 E-value=1.5e-07 Score=80.30 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=54.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCc-cEEEecCCcccchhhh---------------hhHHHHHHHHHHHhccccC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKV-PFCPMVGSEVYSSEVK---------------KTEILMENFRRAIGLRIKE 129 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~-p~i~l~~~~~~~~~~~---------------~~~~l~~~f~~a~~~~~~~ 129 (458)
+.+++|+||||||||++++.+|..+.... .++.++.......... ........+..+... .
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL---K 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc---C
Confidence 46899999999999999999999997643 5777777654432211 112344555555542 2
Q ss_pred CceEEEccccccCccc
Q 012719 130 NKEVYEGEVTELSPEE 145 (458)
Q Consensus 130 ~~ii~iDE~d~l~~~~ 145 (458)
+.++++||+..+....
T Consensus 79 ~~viiiDei~~~~~~~ 94 (148)
T smart00382 79 PDVLILDEITSLLDAE 94 (148)
T ss_pred CCEEEEECCcccCCHH
Confidence 7999999999887553
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.6e-07 Score=91.64 Aligned_cols=112 Identities=23% Similarity=0.305 Sum_probs=81.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc--hhhhhhHHHHHHHHHHHhccccCCceEEEccccccCc
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS--SEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSP 143 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~--~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~ 143 (458)
-.++||.||||+|||+||..+|..-. +||+.+-.++-.. ++..+...+...|+.|+.. .-++|++|+++.+..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~--FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS---~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSD--FPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS---PLSIIVVDDIERLLD 612 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcC--CCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC---cceEEEEcchhhhhc
Confidence 46899999999999999999998877 9999986665444 3444455799999999863 479999999998874
Q ss_pred cccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhccccCCeEEEeccCccc
Q 012719 144 EETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAV 203 (458)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~ 203 (458)
.-.-. ..+...+.|.|+. +.+.....|..++|.+||...
T Consensus 613 ~vpIG--PRfSN~vlQaL~V-------------------llK~~ppkg~kLli~~TTS~~ 651 (744)
T KOG0741|consen 613 YVPIG--PRFSNLVLQALLV-------------------LLKKQPPKGRKLLIFGTTSRR 651 (744)
T ss_pred ccccC--chhhHHHHHHHHH-------------------HhccCCCCCceEEEEecccHH
Confidence 32211 1234444554433 345556678899999998654
No 237
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.58 E-value=7.4e-07 Score=92.54 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=49.0
Q ss_pred CccccccchHHHHHHHHHHHH-HHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 37 PLAAGFVGQVEAREAAGLVVD-MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~-~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
..|+|+.|++++++.+-..+. ++.......+.++|.||||+|||+||+.||+.+.. .|+..+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~-~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER-VPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh-CcceeecC
Confidence 458899999999997765553 33333444567889999999999999999999864 46666655
No 238
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.56 E-value=1.6e-06 Score=89.65 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=93.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-------------C-eEEEecCCc-cccccCCCCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-------------P-IVIFATNRG-ICNIRGTDMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-------------~-i~il~tn~~-~~~~~~~~~~~~~~l~~~l~sR~~~i- 363 (458)
||--|||++.|+..-+-+|..+||.-.. . -++.++|+- +.-.+...+..--++.++++|||..+
T Consensus 444 GICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~F 523 (764)
T KOG0480|consen 444 GICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFF 523 (764)
T ss_pred ceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEE
Confidence 9999999999999999999999996421 1 244555553 22333334555667889999999654
Q ss_pred -ccCCCCHH-----------------------------HHHHHHHHHHHhcCCccCHHHHHHHHHHh----h---cC---
Q 012719 364 -RTQIYGPA-----------------------------EMIQILAIRAQVEEIVLDEESLAHLGEIA----R---DT--- 403 (458)
Q Consensus 364 -~~~~~~~~-----------------------------e~~~il~~~~~~~~~~i~~~~l~~i~~~~----~---~g--- 403 (458)
-++.+++. ++++++.... ..--.++.++.+.|++.- . +|
T Consensus 524 iLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~ 602 (764)
T KOG0480|consen 524 ILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNR 602 (764)
T ss_pred EEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCc
Confidence 45555443 3333333322 222235666666666431 0 11
Q ss_pred -----CHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 404 -----SLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 404 -----~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
..|.+..+++.+-+.|...-++.+|++||.+++.+.
T Consensus 603 ~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 603 SSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 268899999999999998888999999999998854
No 239
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.53 E-value=5.1e-07 Score=99.27 Aligned_cols=155 Identities=20% Similarity=0.228 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEcccchhc---------HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCC
Q 012719 278 LRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLD---------MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNS 348 (458)
Q Consensus 278 ~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~---------~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~ 348 (458)
++.+..+.+++++++-... .+.||||||+|.+. .++++.|...++.... .+|.+||.. +++.
T Consensus 255 ~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i-~~IgaTt~~-------e~~~ 325 (731)
T TIGR02639 255 YRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKL-RCIGSTTYE-------EYKN 325 (731)
T ss_pred ccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCe-EEEEecCHH-------HHHH
Confidence 3344555566666543211 24799999999995 4568889888886432 345555321 1122
Q ss_pred CCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHhhcC------CHHHHHHhhHHHHHH
Q 012719 349 PHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQV----EEIVLDEESLAHLGEIARDT------SLRHAVQLLYPASVV 418 (458)
Q Consensus 349 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~----~~~~i~~~~l~~i~~~~~~g------~~r~a~~ll~~a~~~ 418 (458)
.....++|.+||+.+.+++++.++..+||+..... .++.++++++..++.++ ++ -|+.|+.+++.|+..
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls-~ryi~~r~~P~kai~lld~a~a~ 404 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELS-ARYINDRFLPDKAIDVIDEAGAS 404 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhh-hcccccccCCHHHHHHHHHhhhh
Confidence 34568899999999999999999999999976553 46789999999999998 43 278999999988765
Q ss_pred HhhhC----CCCccHHHHHHHHHhhhch
Q 012719 419 AKMNG----RDSICKADVEEVKALYLDA 442 (458)
Q Consensus 419 a~~~~----~~~it~~~v~~~~~~~~~~ 442 (458)
..... ...||.++|..++..+...
T Consensus 405 ~~~~~~~~~~~~v~~~~i~~~i~~~tgi 432 (731)
T TIGR02639 405 FRLRPKAKKKANVSVKDIENVVAKMAHI 432 (731)
T ss_pred hhcCcccccccccCHHHHHHHHHHHhCC
Confidence 54432 3459999999998876543
No 240
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.53 E-value=4.5e-06 Score=86.99 Aligned_cols=139 Identities=21% Similarity=0.181 Sum_probs=89.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-------------C-CeEEEecCCccccccCC-CCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-------------S-PIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~-~i~il~tn~~~~~~~~~-~~~~~~~l~~~l~sR~~~i- 363 (458)
||--|||++.|+....+.|...||.-. . +=++.++|+....-+.. ....-=.|||+|+|||..+
T Consensus 528 GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIy 607 (804)
T KOG0478|consen 528 GICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIF 607 (804)
T ss_pred ceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEE
Confidence 899999999999999999999999521 1 12455566543322111 2333346899999999766
Q ss_pred -ccCCCCHH---HHHHHH-HHHH------------------------HhcCCccCHHHHHHHHHHhh--------cC---
Q 012719 364 -RTQIYGPA---EMIQIL-AIRA------------------------QVEEIVLDEESLAHLGEIAR--------DT--- 403 (458)
Q Consensus 364 -~~~~~~~~---e~~~il-~~~~------------------------~~~~~~i~~~~l~~i~~~~~--------~g--- 403 (458)
-+++.++. .+.+.+ .... +..--.+++++...+...-. .|
T Consensus 608 lllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~it 687 (804)
T KOG0478|consen 608 LLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQIT 687 (804)
T ss_pred EEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccc
Confidence 56666543 111111 1111 11123466777766653310 11
Q ss_pred -CHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 404 -SLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 404 -~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
.+|....+++.+.++|.+.-...+...+|++|+.+
T Consensus 688 at~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 688 ATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 26888888888889998888888999999998774
No 241
>PRK12377 putative replication protein; Provisional
Probab=98.52 E-value=1.2e-06 Score=83.39 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=59.3
Q ss_pred CCCcccccc----chHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCCcccchhh
Q 012719 35 AVPLAAGFV----GQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 35 ~~~~l~~li----G~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~~~~~~~~ 109 (458)
...+|+.+. |+..+...+..++..+..+ ..+++|+||||||||+||.++|..+.. ...++.++..++.....
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~---~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELMTG---CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 344576664 4555555555555444332 358999999999999999999998832 23345555555443221
Q ss_pred hhh---HHHHHHHHHHHhccccCCceEEEccccccC
Q 012719 110 KKT---EILMENFRRAIGLRIKENKEVYEGEVTELS 142 (458)
Q Consensus 110 ~~~---~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~ 142 (458)
..- +...+.++. .....+|++||+....
T Consensus 146 ~~~~~~~~~~~~l~~-----l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 146 ESYDNGQSGEKFLQE-----LCKVDLLVLDEIGIQR 176 (248)
T ss_pred HHHhccchHHHHHHH-----hcCCCEEEEcCCCCCC
Confidence 110 011122222 2458999999996654
No 242
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.52 E-value=3.8e-06 Score=84.67 Aligned_cols=141 Identities=20% Similarity=0.228 Sum_probs=91.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-------------Ce-EEEecCCccccccCCC--CCCCCCCChhHhhhhccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-------------PI-VIFATNRGICNIRGTD--MNSPHGIPLDLLDRLVII 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-------------~i-~il~tn~~~~~~~~~~--~~~~~~l~~~l~sR~~~i 363 (458)
||--|||++.|+..-.-++-.+||.-.. .+ ++.++|+.- .-+... ...--+||.+|+|||.++
T Consensus 441 GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPay-GRYnprrs~e~NI~LPaALLSRFDll 519 (721)
T KOG0482|consen 441 GICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAY-GRYNPRRSPEQNINLPAALLSRFDLL 519 (721)
T ss_pred ceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccc-cccCcccChhHhcCCcHHHHHhhhhh
Confidence 8999999999999999999999985321 11 333344321 111110 111225788999999654
Q ss_pred c-------------------------------cCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH----hh-------
Q 012719 364 R-------------------------------TQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEI----AR------- 401 (458)
Q Consensus 364 ~-------------------------------~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~----~~------- 401 (458)
. |+|++.+-++.++. .|+..+-.++++..++|+.. .+
T Consensus 520 ~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~ 598 (721)
T KOG0482|consen 520 WLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKD 598 (721)
T ss_pred hhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCC
Confidence 1 22233333333332 34455555677777777532 10
Q ss_pred --cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhch
Q 012719 402 --DTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDA 442 (458)
Q Consensus 402 --~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~ 442 (458)
-.++|.++.+|+.+.++|.++=...+..+||.+|+.|.=..
T Consensus 599 ~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 599 FTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred CcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 13689999999999999999988899999999999865433
No 243
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.1e-06 Score=83.48 Aligned_cols=145 Identities=23% Similarity=0.282 Sum_probs=109.3
Q ss_pred HHHHHHHhhccc----------cccceEEEEcccchhc-----------HHHHHHHHHHhhc-----cCCC-eEEEecCC
Q 012719 284 KVVNRFIDEGAA----------ELVPGVLFIDEVHMLD-----------MECFSYLNRALES-----SLSP-IVIFATNR 336 (458)
Q Consensus 284 ~~~~~~~~~~~~----------~~~~~Vl~IDE~~~l~-----------~~~~~~Ll~~lE~-----~~~~-i~il~tn~ 336 (458)
+.+.+|+.||.. +-.+.|+||||++... .++|.+++.++.. +... =+|.+|
T Consensus 220 ElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~AT-- 297 (406)
T COG1222 220 ELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMAT-- 297 (406)
T ss_pred HHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEec--
Confidence 345555555543 4457999999999973 6789998888874 2334 478889
Q ss_pred ccccccCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 337 GICNIRGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
|.+.-|.|+|+. |+... .|+.++.+...+||+-+..+.++.=+ --++.|++.....|-...-.++.
T Consensus 298 ----------NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d-vd~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 298 ----------NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD-VDLELLARLTEGFSGADLKAICT 366 (406)
T ss_pred ----------CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC-cCHHHHHHhcCCCchHHHHHHHH
Confidence 567788899883 66544 99999999999999999887665311 12667777774456777778999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 414 PASVVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 414 ~a~~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
-|..+|....+..||.+|...|+.=.+.
T Consensus 367 EAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 367 EAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 9999999999999999999999874443
No 244
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.51 E-value=5.3e-06 Score=86.08 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=85.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-----------C-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-----------P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-----------~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|+|||||++.|++..|..|++.+++... + -+|.+|+.... +.-....+.+.|..|+..+ .+
T Consensus 235 gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~-----~~~~~~~~~~~l~~~l~~~~i~~ 309 (441)
T PRK10365 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA-----AEVNAGRFRQDLYYRLNVVAIEV 309 (441)
T ss_pred CEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH-----HHHHcCCchHHHHHHhccceecC
Confidence 9999999999999999999999987531 2 25555543210 0112345667777787544 66
Q ss_pred CCCCH--HHHHHHHHHH----HHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 366 QIYGP--AEMIQILAIR----AQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 366 ~~~~~--~e~~~il~~~----~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
+|+.+ +++..++..- +...+ ..+++++++.|..+.=.|++|.+.+.++.+...+ ....|+.+++..
T Consensus 310 ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 310 PSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred CChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 77752 3444443332 33222 3589999999998876799999999999877654 334577777654
No 245
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.45 E-value=1.6e-05 Score=75.82 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=33.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC--------CCeEEEecCCcc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL--------SPIVIFATNRGI 338 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~--------~~i~il~tn~~~ 338 (458)
.++++||++.|++...+.|-..++.++ ..|+|+.+|.++
T Consensus 180 slFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 180 SLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred ceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 899999999999999999999999542 348999998765
No 246
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=1.1e-06 Score=75.02 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=44.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-CeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-PIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEM 373 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 373 (458)
.++||||+|.++ +....+....+..+. .+++.+++.. .........+..|...+.+.|++-.|.
T Consensus 63 ~~i~iDEiq~~~-~~~~~lk~l~d~~~~~~ii~tgS~~~---------~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLP-DWEDALKFLVDNGPNIKIILTGSSSS---------LLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhc-cHHHHHHHHHHhccCceEEEEccchH---------HHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999999997 577777777776633 3444444221 112244566888999999999998774
No 247
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.42 E-value=1.8e-05 Score=79.75 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=81.6
Q ss_pred eEEEEcccchhc----HHHHHHHHHHhhccCC---------C-eEEEecCCccccc---cCCC--CCCCCCC-ChhHhhh
Q 012719 300 GVLFIDEVHMLD----MECFSYLNRALESSLS---------P-IVIFATNRGICNI---RGTD--MNSPHGI-PLDLLDR 359 (458)
Q Consensus 300 ~Vl~IDE~~~l~----~~~~~~Ll~~lE~~~~---------~-i~il~tn~~~~~~---~~~~--~~~~~~l-~~~l~sR 359 (458)
.+|+|||+..++ .+..+.|-..||.... . =+++..|-..... ...+ ..-|..+ ..+|++|
T Consensus 262 DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDR 341 (449)
T TIGR02688 262 DVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDR 341 (449)
T ss_pred CEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHHh
Confidence 799999999975 3466667777775421 1 1233333221100 1111 1112222 2368999
Q ss_pred hccc----ccCCCCHHH-----------HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhh-hC
Q 012719 360 LVII----RTQIYGPAE-----------MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKM-NG 423 (458)
Q Consensus 360 ~~~i----~~~~~~~~e-----------~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~-~~ 423 (458)
++-+ .++.++++- +.+++...-+ .+++ ++++...++..+-+-|+....-..+..+... ..
T Consensus 342 iH~yiPGWeipk~~~e~~t~~yGl~~DylsE~l~~lR~---~~~~-~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P 417 (449)
T TIGR02688 342 IHGYLPGWEIPKIRKEMFSNGYGFVVDYFAEALRELRE---REYA-DIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFP 417 (449)
T ss_pred hhccCCCCcCccCCHHHcccCCcchHHHHHHHHHHHHh---hHHH-HhhhhheecCCCcchhhHHHHHHHHHHHHHHhCC
Confidence 9744 688887753 2333332211 1222 2344444444244667766666665554443 45
Q ss_pred CCCccHHHHHHHHHhhhchHHHHHH
Q 012719 424 RDSICKADVEEVKALYLDAKSSAKL 448 (458)
Q Consensus 424 ~~~it~~~v~~~~~~~~~~~~~~~~ 448 (458)
...+|.+++++++.+.+.-|+.|+.
T Consensus 418 ~~~~~~ee~~~~l~~Ale~RrrVke 442 (449)
T TIGR02688 418 HGTITKEEFTECLEPALEGRQRVKD 442 (449)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999988865
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.40 E-value=2e-06 Score=81.59 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCcccccc-chHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCCcccchhhhhh-
Q 012719 36 VPLAAGFV-GQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGSEVYSSEVKKT- 112 (458)
Q Consensus 36 ~~~l~~li-G~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~~~~~~~~~~~- 112 (458)
..+|+.+. +.+....++..+..++..-.....+++|+|+||||||+||.++|.++.. ...++.++.+++........
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~ 147 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS 147 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh
Confidence 45677775 2223333333444444332111248999999999999999999998832 23455556555543222110
Q ss_pred --H-HHHHHHHHHHhccccCCceEEEccccccC
Q 012719 113 --E-ILMENFRRAIGLRIKENKEVYEGEVTELS 142 (458)
Q Consensus 113 --~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~ 142 (458)
. .....++. .....+++|||+....
T Consensus 148 ~~~~~~~~~l~~-----l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 148 NSETSEEQLLND-----LSNVDLLVIDEIGVQT 175 (244)
T ss_pred hccccHHHHHHH-----hccCCEEEEeCCCCCC
Confidence 0 11122222 1348899999997753
No 249
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=1.5e-06 Score=74.18 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=28.8
Q ss_pred eEEEEcccchh-cHHHHHHHHHHhhccCCCeEEEec
Q 012719 300 GVLFIDEVHML-DMECFSYLNRALESSLSPIVIFAT 334 (458)
Q Consensus 300 ~Vl~IDE~~~l-~~~~~~~Ll~~lE~~~~~i~il~t 334 (458)
.+++|||+|.+ +.+.++.|...++++..+++++++
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEES
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence 69999999999 999999999888855555666555
No 250
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.37 E-value=1.1e-06 Score=79.52 Aligned_cols=49 Identities=35% Similarity=0.486 Sum_probs=31.5
Q ss_pred cccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 41 GFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 41 ~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++|.++..+.+..+++ .. ....++.++++|++|+|||++.+.+...+.
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~-~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA-QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT-SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH-HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899988887776665 22 223347899999999999999999988774
No 251
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.1e-06 Score=89.31 Aligned_cols=134 Identities=25% Similarity=0.193 Sum_probs=99.2
Q ss_pred ccccceEEEEcccchhcHHHHHHHHHHhhccCC---------------------C-eEEEecCCccccccCCCCCCCCCC
Q 012719 295 AELVPGVLFIDEVHMLDMECFSYLNRALESSLS---------------------P-IVIFATNRGICNIRGTDMNSPHGI 352 (458)
Q Consensus 295 ~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~---------------------~-i~il~tn~~~~~~~~~~~~~~~~l 352 (458)
++++.|||||||+..|++..++.+|+.|++... + .+|+..|+ .....+
T Consensus 222 HkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~----------~~l~~l 291 (647)
T COG1067 222 HKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNR----------EDLEDL 291 (647)
T ss_pred ccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCH----------HHHHhh
Confidence 356679999999999999999999999987521 2 34444443 344555
Q ss_pred ChhHhhhhcc----c---ccCCCCHHHHHHHHHHHHH----h-cCCccCHHHHHHHHHHhhcC---------CHHHHHHh
Q 012719 353 PLDLLDRLVI----I---RTQIYGPAEMIQILAIRAQ----V-EEIVLDEESLAHLGEIARDT---------SLRHAVQL 411 (458)
Q Consensus 353 ~~~l~sR~~~----i---~~~~~~~~e~~~il~~~~~----~-~~~~i~~~~l~~i~~~~~~g---------~~r~a~~l 411 (458)
-++..||... . .-.+.++++..+.++..++ . .-..++.+|+..|...+.++ .+|++.++
T Consensus 292 ~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~l 371 (647)
T COG1067 292 HEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNL 371 (647)
T ss_pred cccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHH
Confidence 5666666643 2 3445567776666655443 4 33469999999999876443 48999999
Q ss_pred hHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 412 LYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 412 l~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
++.|..+|...|+..||.+||++|+..
T Consensus 372 v~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 372 VREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred HHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 999999999999999999999999984
No 252
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.35 E-value=1.4e-05 Score=89.85 Aligned_cols=123 Identities=18% Similarity=0.243 Sum_probs=84.8
Q ss_pred EEEEcccchhcHHHHHHHHHHhhcc-------------CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccC
Q 012719 301 VLFIDEVHMLDMECFSYLNRALESS-------------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQ 366 (458)
Q Consensus 301 Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~ 366 (458)
-+++||.+..+.++..+|++++++. |.| +.+++|...+- + +.--..|+-+|+.||..++|.
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg-~----YgGRK~LSrAFRNRFlE~hFd 1032 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPG-G----YGGRKGLSRAFRNRFLEMHFD 1032 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCc-c----ccchHHHHHHHHhhhHhhhcc
Confidence 4678999999999999999999873 334 77788842110 0 011224677899999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHH-------hhHHHHHHHhhhCCCCccHHHHH
Q 012719 367 IYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQ-------LLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 367 ~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~-------ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
.++++|+..||..+| +|.+--+..|++.-++-+.|+-.+ .+-...++-.+.++..+..+.+.
T Consensus 1033 dipedEle~ILh~rc-----~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDLFrWa~R~avgy~qla 1101 (4600)
T COG5271 1033 DIPEDELEEILHGRC-----EIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDLFRWAGRIAVGYDQLA 1101 (4600)
T ss_pred cCcHHHHHHHHhccC-----ccCHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHhccccchHHHHH
Confidence 999999999999874 677777888887653445544333 22333344445566666666554
No 253
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.34 E-value=2.4e-06 Score=88.03 Aligned_cols=143 Identities=19% Similarity=0.229 Sum_probs=87.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-------------C-eEEEecCCccccccCC-CCCCCCCCChhHhhhhccc-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-------------P-IVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVII- 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-------------~-i~il~tn~~~~~~~~~-~~~~~~~l~~~l~sR~~~i- 363 (458)
||-+|||++.|+..-...+-.+||.-.. . .+|.++|+-+-.-... ....--.|..|++|||.++
T Consensus 548 GvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLc 627 (854)
T KOG0477|consen 548 GVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILC 627 (854)
T ss_pred ceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceee
Confidence 9999999999998888888888885311 2 3677777643211111 1223336677899999755
Q ss_pred ----ccCCCCHHHHHHHHH-HHHHhc-------CC----------ccCHHHHHHHHHHhh--------------------
Q 012719 364 ----RTQIYGPAEMIQILA-IRAQVE-------EI----------VLDEESLAHLGEIAR-------------------- 401 (458)
Q Consensus 364 ----~~~~~~~~e~~~il~-~~~~~~-------~~----------~i~~~~l~~i~~~~~-------------------- 401 (458)
.+.|..++.+++-+. .+.+.. ++ .++.+++...+-+++
T Consensus 628 VvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya 707 (854)
T KOG0477|consen 628 VVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYA 707 (854)
T ss_pred eeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 455555555554443 222110 00 133444433322210
Q ss_pred --------cC----CHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhch
Q 012719 402 --------DT----SLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDA 442 (458)
Q Consensus 402 --------~g----~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~ 442 (458)
.| ..|....+++.+.++|.+.=+..++.+|+..|+...++-
T Consensus 708 ~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 708 DLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 24 268888899999999998888999999998876644443
No 254
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.33 E-value=6e-06 Score=81.16 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=100.5
Q ss_pred eEEEEcccchhc-HHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHh--hhhcccccCCCCHHHHHH
Q 012719 300 GVLFIDEVHMLD-MECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLL--DRLVIIRTQIYGPAEMIQ 375 (458)
Q Consensus 300 ~Vl~IDE~~~l~-~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~--sR~~~i~~~~~~~~e~~~ 375 (458)
.|++|++++.+. ....+.|++.+++++.. ++|+.++.. .....+...+. ++|..+.+.+++..++..
T Consensus 48 kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~---------~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~ 118 (302)
T TIGR01128 48 RLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKL---------DKRKKLTKWLKALKNAQIVECKTPKEQELPR 118 (302)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCC---------CHhHHHHHHHHHhcCeeEEEecCCCHHHHHH
Confidence 899999999986 46789999999998877 566666311 11111112222 489999999999999999
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 376 ILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 376 il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
++...++..|+.++++++.+|+... .|+++.+.+.++....++ +...||.++|...+.
T Consensus 119 ~i~~~~~~~g~~i~~~a~~~l~~~~-~~d~~~l~~el~KL~~~~---~~~~It~e~I~~~~~ 176 (302)
T TIGR01128 119 WIQARLKKLGLRIDPDAVQLLAELV-EGNLLAIAQELEKLALYA---PDGKITLEDVEEAVS 176 (302)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHhhC---CCCCCCHHHHHHHHh
Confidence 9999999999999999999999999 899999999999877765 334699999998766
No 255
>PRK08116 hypothetical protein; Validated
Probab=98.33 E-value=2.6e-06 Score=82.32 Aligned_cols=99 Identities=24% Similarity=0.153 Sum_probs=57.0
Q ss_pred Cccccccc---hHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchhhhhh
Q 012719 37 PLAAGFVG---QVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSEVKKT 112 (458)
Q Consensus 37 ~~l~~liG---~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~~~~~ 112 (458)
.+|+.+.- +..+...+..+++.+......+.+++|+|+||||||+||.++++++. ...+++.++.+++.......-
T Consensus 82 ~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 82 STFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTY 161 (268)
T ss_pred cchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 45665543 33344444444444333333345799999999999999999999872 135677776666544322110
Q ss_pred -----HHHHHHHHHHHhccccCCceEEEccccc
Q 012719 113 -----EILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 113 -----~~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
....+.++.. ....+|++||+..
T Consensus 162 ~~~~~~~~~~~~~~l-----~~~dlLviDDlg~ 189 (268)
T PRK08116 162 KSSGKEDENEIIRSL-----VNADLLILDDLGA 189 (268)
T ss_pred hccccccHHHHHHHh-----cCCCEEEEecccC
Confidence 0111122211 2367999999854
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.31 E-value=1.4e-06 Score=75.54 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=37.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-CC-CeEEEecCCccccccCCCCCCCCCCChhHhhhhccc--ccCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-LS-PIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RTQI 367 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-~~-~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~~~ 367 (458)
|.|||+|++.|+++.|..|+.+++.. .. .-+|+++..... +.-....+.+.|..|+..+ .++|
T Consensus 71 gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~-----~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 71 GTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLE-----ELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp SEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CC-----CHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred CEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHH-----HHhhccchhHHHHHHhCCCEEeCCC
Confidence 89999999999999999999999865 22 244445532100 0001224556777777443 5544
No 257
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.25 E-value=4.7e-06 Score=91.50 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=85.1
Q ss_pred eEEEEcccchhcH---HHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 300 GVLFIDEVHMLDM---ECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 300 ~Vl~IDE~~~l~~---~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
.|+++||++.|.. ..+..|-.+.+....|+++++..+ -..-+.++.+-|..++|..++.+.+...
T Consensus 430 ~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr------------~~p~sr~~~~~~~~l~f~kP~~~~i~~r 497 (871)
T KOG1968|consen 430 FLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDR------------NLPKSRALSRACSDLRFSKPSSELIRSR 497 (871)
T ss_pred eEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEecCC------------CCccccchhhhcceeeecCCcHHHHHhh
Confidence 6999999999976 567777777887777877755532 1222334666678889999999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHH
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPA 415 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a 415 (458)
+...|..+++.++++.++.+.+.. +|++|..++.|+.-
T Consensus 498 i~si~~se~~ki~~~~l~~~s~~~-~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 498 IMSICKSEGIKISDDVLEEISKLS-GGDIRQIIMQLQFW 535 (871)
T ss_pred hhhhhcccceecCcHHHHHHHHhc-ccCHHHHHHHHhhh
Confidence 999999999999999999999999 99999999999855
No 258
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.23 E-value=3.8e-06 Score=82.61 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=42.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecCCcccchhhhhhH--HHHHHHHHHHhccccCCceEEEccccc
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVGSEVYSSEVKKTE--ILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~~~~~~~~~~~~~--~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
+++++|+||+|||||+||.++|.++ +.++.|+. .++++........ .+.+.++.. ....++++||+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~--~~~l~~~lk~~~~~~~~~~~l~~l-----~~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH--FPEFIRELKNSISDGSVKEKIDAV-----KEAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE--HHHHHHHHHHHHhcCcHHHHHHHh-----cCCCEEEEecCCC
Confidence 4799999999999999999999988 43333443 3343322211100 122223322 3489999999855
No 259
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.23 E-value=3.7e-05 Score=74.83 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=80.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-----------Ce-EEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-----------PI-VIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-----------~i-~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|-+|+|||..|++..|..|++.+.+... ++ +|.+|... -.++-....+...+.-|+.++ ++
T Consensus 295 GTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~n-----L~~lv~~g~fReDLfyRLNVLtl~~ 369 (511)
T COG3283 295 GTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVN-----LVELVQKGKFREDLFYRLNVLTLNL 369 (511)
T ss_pred CeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEeccccc-----HHHHHhcCchHHHHHHHhheeeecC
Confidence 8999999999999999999999987532 22 44444211 112334455566777788665 66
Q ss_pred CCCCH--H---HHH-HHHHHHHHhcCC---ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 366 QIYGP--A---EMI-QILAIRAQVEEI---VLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 366 ~~~~~--~---e~~-~il~~~~~~~~~---~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+|+.+ + -+. -.+++.+.+.++ .++++.+.++-++.=.|+.|.+.+.+.+|....
T Consensus 370 PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 370 PPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred CccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 66642 1 223 344566777776 478899999988876799999999999887655
No 260
>PRK08181 transposase; Validated
Probab=98.19 E-value=5.5e-06 Score=79.79 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=45.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchhhhhhH--HHHHHHHHHHhccccCCceEEEccccccCc
Q 012719 67 RALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSEVKKTE--ILMENFRRAIGLRIKENKEVYEGEVTELSP 143 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~~~~~~--~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~ 143 (458)
.+++|+||||||||+||.+++.++. ....++.++..++......... .+.+.++.. ..+.++++||+..+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l-----~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL-----DKFDLLILDDLAYVTK 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH-----hcCCEEEEeccccccC
Confidence 5899999999999999999998762 1233455555554443211110 122333332 3478999999987654
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.13 E-value=5.9e-06 Score=79.10 Aligned_cols=88 Identities=26% Similarity=0.355 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCCcccchhhhhhH--HHHHHHHHH
Q 012719 46 VEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGSEVYSSEVKKTE--ILMENFRRA 122 (458)
Q Consensus 46 ~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~~~~~~~~~~~~--~l~~~f~~a 122 (458)
..+...+..+...+. .+.+++|+||||||||+||-|++..+-. .+.+..++.++++..-...-. .....+..
T Consensus 89 ~~~l~~~~~~~~~~~----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~- 163 (254)
T COG1484 89 KKALEDLASLVEFFE----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR- 163 (254)
T ss_pred HHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH-
Confidence 344444444444444 3469999999999999999999998832 245666666665443222111 01111111
Q ss_pred HhccccCCceEEEcccccc
Q 012719 123 IGLRIKENKEVYEGEVTEL 141 (458)
Q Consensus 123 ~~~~~~~~~ii~iDE~d~l 141 (458)
......++++||+-..
T Consensus 164 ---~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 164 ---ELKKVDLLIIDDIGYE 179 (254)
T ss_pred ---HhhcCCEEEEecccCc
Confidence 1244889999998654
No 262
>PRK06921 hypothetical protein; Provisional
Probab=98.12 E-value=1e-05 Score=78.00 Aligned_cols=70 Identities=23% Similarity=0.341 Sum_probs=42.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--CccEEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccc
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS--KVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~--~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
..+++|+||||||||+||.++|+++.. ...++.++..++.......-....+.++ ......+|++||+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~-----~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLN-----RMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHH-----HhcCCCEEEEecccc
Confidence 468999999999999999999998743 2445555554433221110001111111 123478999999943
No 263
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.08 E-value=1.3e-05 Score=79.44 Aligned_cols=71 Identities=21% Similarity=0.139 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchhhhh----hHHHHHHHHHHHhccccCCceEEEcccccc
Q 012719 67 RALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSEVKK----TEILMENFRRAIGLRIKENKEVYEGEVTEL 141 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~~~~----~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l 141 (458)
.+++|+||||||||+||.++|+++- ....++.++..++....... .......++.. ....+|+||++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l-----~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL-----INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh-----ccCCEEEEeccCCC
Confidence 6899999999999999999999872 12345666666654432111 00111112222 33789999998665
Q ss_pred C
Q 012719 142 S 142 (458)
Q Consensus 142 ~ 142 (458)
.
T Consensus 259 ~ 259 (329)
T PRK06835 259 K 259 (329)
T ss_pred C
Confidence 3
No 264
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.06 E-value=0.00015 Score=71.54 Aligned_cols=63 Identities=30% Similarity=0.329 Sum_probs=45.5
Q ss_pred ccc-cccchHHHHHHHHHHHHHHHhcccC-CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 38 LAA-GFVGQVEAREAAGLVVDMIRQKKMA-GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 38 ~l~-~liG~~~~~~~l~~l~~~~~~~~~~-~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.|+ ++.|.++....+-...+.+..|... .+-++|.||+|+|||++++.|-+.+.. .|+..+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~-y~~Y~l~~ 122 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE-YPIYTLKG 122 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe-EEEEEecC
Confidence 355 8999999888766555544444333 456789999999999999999998853 35554433
No 265
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.04 E-value=1.4e-05 Score=67.21 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHHHHHHhcccCCceEE--EEcCCCChHHHHHHHHHHHh
Q 012719 40 AGFVGQVEAREAAGLVVDMIRQKKMAGRALL--LAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 40 ~~liG~~~~~~~l~~l~~~~~~~~~~~~~~L--l~GppGtGKT~lA~alA~~l 90 (458)
..|.||.-+.+.+-..+...-....|.++++ |+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4578999888877555543333334555555 89999999999999999987
No 266
>PRK06526 transposase; Provisional
Probab=98.02 E-value=5.4e-06 Score=79.34 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=41.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecCCcccchhhhhh--HHHHHHHHHHHhccccCCceEEEcccccc
Q 012719 67 RALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVGSEVYSSEVKKT--EILMENFRRAIGLRIKENKEVYEGEVTEL 141 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~~~~~~~~~~~~--~~l~~~f~~a~~~~~~~~~ii~iDE~d~l 141 (458)
.+++|+||||||||++|.+++..+ +.. +...+..++........ ..+...++. ...+.++++||+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~--v~f~t~~~l~~~l~~~~~~~~~~~~l~~-----l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR--VLFATAAQWVARLAAAHHAGRLQAELVK-----LGRYPLLIVDEVGYI 171 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc--hhhhhHHHHHHHHHHHHhcCcHHHHHHH-----hccCCEEEEcccccC
Confidence 589999999999999999999876 333 22233333322111100 012222222 134789999999875
Q ss_pred C
Q 012719 142 S 142 (458)
Q Consensus 142 ~ 142 (458)
.
T Consensus 172 ~ 172 (254)
T PRK06526 172 P 172 (254)
T ss_pred C
Confidence 4
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.01 E-value=4.3e-06 Score=75.69 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=41.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCCcccchhhhhh--HHHHHHHHHHHhccccCCceEEEccccc
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGSEVYSSEVKKT--EILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~~~~~~~~~~~--~~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
+.+++|+||||||||++|.++++++ ....+...++.++++....... ....+.++... ...++++||+-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~-----~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK-----RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH-----TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc-----cccEecccccce
Confidence 4699999999999999999999866 2224455555555543321110 01223333322 378899999843
No 268
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.97 E-value=9.1e-05 Score=71.69 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=44.5
Q ss_pred eEEEEcccchhcHH------HHHHHHHHhhcc------------CCCe-EEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDME------CFSYLNRALESS------------LSPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~------~~~~Ll~~lE~~------------~~~i-~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
-|+|||+++.-.++ ....|.++++.. -..+ ++.+.|+. .....+++.|++.|
T Consensus 102 lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~---------~Gr~~is~R~~r~f 172 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT---------GGRNPISPRFLRHF 172 (272)
T ss_dssp EEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST---------TT--SHHHHHHTTE
T ss_pred EEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC---------CCCCCCChHHhhhe
Confidence 68999999987533 567788888742 1133 33333332 11234778899899
Q ss_pred cccccCCCCHHHHHHHHHHHHH
Q 012719 361 VIIRTQIYGPAEMIQILAIRAQ 382 (458)
Q Consensus 361 ~~i~~~~~~~~e~~~il~~~~~ 382 (458)
.++.+++++++.+..|......
T Consensus 173 ~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 173 NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEE----TCCHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHh
Confidence 9999999999999988876655
No 269
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.95 E-value=0.00012 Score=71.23 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=47.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-CCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-SPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
.++++|++.... ..+.|...+-... ..-+|++| .+. .+...+......+.+++++.++..+.+.
T Consensus 103 ~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTT------------R~~-~v~~~~~~~~~~~~l~~L~~~ea~~L~~ 167 (287)
T PF00931_consen 103 CLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTT------------RDR-SVAGSLGGTDKVIELEPLSEEEALELFK 167 (287)
T ss_dssp EEEEEEEE-SHH--HH-------HCHHSS-EEEEEE------------SCG-GGGTTHHSCEEEEECSS--HHHHHHHHH
T ss_pred ceeeeeeecccc--cccccccccccccccccccccc------------ccc-cccccccccccccccccccccccccccc
Confidence 799999988766 3333333332222 22344455 111 1111222224567999999999999999
Q ss_pred HHHHhcC---CccCHHHHHHHHHHhhcCCHH
Q 012719 379 IRAQVEE---IVLDEESLAHLGEIARDTSLR 406 (458)
Q Consensus 379 ~~~~~~~---~~i~~~~l~~i~~~~~~g~~r 406 (458)
..+.... ..-.++....|++.+ +|.|-
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~c-~glPL 197 (287)
T PF00931_consen 168 KRAGRKESESPEDLEDLAKEIVEKC-GGLPL 197 (287)
T ss_dssp HHHTSHS----TTSCTHHHHHHHHT-TT-HH
T ss_pred ccccccccccccccccccccccccc-ccccc
Confidence 8876544 223356778899998 66543
No 270
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.94 E-value=0.0017 Score=64.47 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=54.6
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhcc---CCCeEEEecCCccccccCC-CCCC--CCCCChhHhhhhccc--ccCCCCH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESS---LSPIVIFATNRGICNIRGT-DMNS--PHGIPLDLLDRLVII--RTQIYGP 370 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~i~il~tn~~~~~~~~~-~~~~--~~~l~~~l~sR~~~i--~~~~~~~ 370 (458)
+-|+||||+|+++++....++..+... +.-++|++.++..-.-... .+.. .......+++++..+ .+|+++.
T Consensus 173 ~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~~ 252 (325)
T PF07693_consen 173 RIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPSP 252 (325)
T ss_pred eEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCCH
Confidence 479999999999998777777776643 2227777776542100000 0111 123445688898544 8999999
Q ss_pred HHHHHHHHHHHH
Q 012719 371 AEMIQILAIRAQ 382 (458)
Q Consensus 371 ~e~~~il~~~~~ 382 (458)
.++.+.+.....
T Consensus 253 ~~~~~~~~~~~~ 264 (325)
T PF07693_consen 253 SDLERYLNELLE 264 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 271
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.93 E-value=0.00064 Score=69.13 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=84.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-------------CCeEEE-ecCCccccccCC--CCC-CCC--CCChhHhhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-------------SPIVIF-ATNRGICNIRGT--DMN-SPH--GIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~i~il-~tn~~~~~~~~~--~~~-~~~--~l~~~l~sR~ 360 (458)
||+-|||++.|.++-.-++-.+||.-. +..-++ ++|+ ++|. ++. ... .+-++++|||
T Consensus 430 GVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp----vfGRyDd~Kt~~dNIDf~~TILSRF 505 (729)
T KOG0481|consen 430 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP----VFGRYDDTKTGEDNIDFMPTILSRF 505 (729)
T ss_pred CEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC----ccccccccCCcccccchhhhHhhhc
Confidence 999999999999999999999999531 111222 2322 2222 222 222 3458999999
Q ss_pred cccc-cCCCCHH----HHH-HHHHHHHH------------------------------hcCCccCHHHHHHHHHHhh---
Q 012719 361 VIIR-TQIYGPA----EMI-QILAIRAQ------------------------------VEEIVLDEESLAHLGEIAR--- 401 (458)
Q Consensus 361 ~~i~-~~~~~~~----e~~-~il~~~~~------------------------------~~~~~i~~~~l~~i~~~~~--- 401 (458)
.++. +...-.+ .+. +++..+.. +-+-.++++|.+.|...-.
T Consensus 506 DmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R 585 (729)
T KOG0481|consen 506 DMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMR 585 (729)
T ss_pred cEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHH
Confidence 8763 3222222 222 22222221 1112355666666543210
Q ss_pred c-----------C-----CHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 402 D-----------T-----SLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 402 ~-----------g-----~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
. . ..|.+..+++.+-.+|.+.=.+..|..||++|+.||--
T Consensus 586 ~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~v 641 (729)
T KOG0481|consen 586 KGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQV 641 (729)
T ss_pred HHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhH
Confidence 0 0 26888888888888888888889999999999998853
No 272
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.92 E-value=5.7e-05 Score=78.86 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=80.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC----------CCe-EEEecCCccccccCCCCCCCCCCChhHhhhhcc--cccC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL----------SPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI--IRTQ 366 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~----------~~i-~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~--i~~~ 366 (458)
|-||+|||..|+-..|..||+++++.. .+| +|-+|++--. .+-.-..+...|.=|+.. +++|
T Consensus 409 GtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~-----~lv~~g~fredLyyrL~~~~i~lP 483 (606)
T COG3284 409 GTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA-----QLVEQGRFREDLYYRLNAFVITLP 483 (606)
T ss_pred CccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH-----HHHHcCCchHHHHHHhcCeeeccC
Confidence 999999999999999999999999852 122 4445532100 112234556677778854 4777
Q ss_pred CCCH-----HHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 367 IYGP-----AEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 367 ~~~~-----~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
|+.+ ..+.+++.+... .++.++++++..|....=-|+.|.+.++++.+..++
T Consensus 484 ~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 484 PLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred chhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 7742 234444444333 567899999999998766799999999999888776
No 273
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.90 E-value=3.1e-05 Score=77.76 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=41.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC--CeEEEecCCccccccCCCCCCCCC--CChhHhhhhcccccC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS--PIVIFATNRGICNIRGTDMNSPHG--IPLDLLDRLVIIRTQ 366 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~--~i~il~tn~~~~~~~~~~~~~~~~--l~~~l~sR~~~i~~~ 366 (458)
.||.+||++--++.-...|-++++.... -++|.++|+.|...+....+...- ..+.|.++|.++.+.
T Consensus 129 ~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld 199 (362)
T PF03969_consen 129 RLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELD 199 (362)
T ss_pred CEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEec
Confidence 5999999999988766666666666533 378888887765444321111111 123466777665443
No 274
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.88 E-value=0.00025 Score=80.30 Aligned_cols=90 Identities=18% Similarity=0.342 Sum_probs=63.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-------------CCC-eEEEec-CCccccccCCCCCCCCCCChhHhhhhcccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-------------LSP-IVIFAT-NRGICNIRGTDMNSPHGIPLDLLDRLVIIR 364 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~-i~il~t-n~~~~~~~~~~~~~~~~l~~~l~sR~~~i~ 364 (458)
+-+++||++..+..+...|+..++.. ..| +.|+++ |+.. ..+--.+||..|+.||-++.
T Consensus 1613 ~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~------qggGRKgLPkSF~nRFsvV~ 1686 (4600)
T COG5271 1613 GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQD------QGGGRKGLPKSFLNRFSVVK 1686 (4600)
T ss_pred CEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchh------cCCCcccCCHHHhhhhheEE
Confidence 77899999999999999999888631 112 444454 3321 12334578999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Q 012719 365 TQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEI 399 (458)
Q Consensus 365 ~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~ 399 (458)
++-++.+++..|+..... ++.++-...+.++
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp----~v~~d~~~kiik~ 1717 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP----QVNEDWRLKIIKF 1717 (4600)
T ss_pred ecccccchHHHHHHhhCC----ccChHHHHHHHHH
Confidence 999999999999887643 3455555444443
No 275
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=97.87 E-value=6.2e-05 Score=78.82 Aligned_cols=135 Identities=22% Similarity=0.232 Sum_probs=86.1
Q ss_pred cccceEEEEcccchhc-HHHHHHHHHHhhcc-------------------CCCe-----EEEecCCccccccCCCCCCCC
Q 012719 296 ELVPGVLFIDEVHMLD-MECFSYLNRALESS-------------------LSPI-----VIFATNRGICNIRGTDMNSPH 350 (458)
Q Consensus 296 ~~~~~Vl~IDE~~~l~-~~~~~~Ll~~lE~~-------------------~~~i-----~il~tn~~~~~~~~~~~~~~~ 350 (458)
.+.+|+|+||--+.|. |.++..|-++|... |.|+ +|+..++.. +....
T Consensus 330 kANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~~-------y~~L~ 402 (509)
T PF13654_consen 330 KANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDREL-------YYLLY 402 (509)
T ss_dssp HTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TTH-------HHHS-
T ss_pred ecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHHH-------HHHHH
Confidence 4667999999999986 67788888887532 1111 333332211 12233
Q ss_pred CCChhHhhhhccc-ccC---CCCHHHHHHHH---HHHHHhcCC-ccCHHHHHHHHHHhhcC-------CHHHHHHhhHHH
Q 012719 351 GIPLDLLDRLVII-RTQ---IYGPAEMIQIL---AIRAQVEEI-VLDEESLAHLGEIARDT-------SLRHAVQLLYPA 415 (458)
Q Consensus 351 ~l~~~l~sR~~~i-~~~---~~~~~e~~~il---~~~~~~~~~-~i~~~~l~~i~~~~~~g-------~~r~a~~ll~~a 415 (458)
...|.|.+-|.+. .|. +.+++.+...+ ...|++.++ .++.+++..|++.+.+- .+.....+|.-|
T Consensus 403 ~~D~dF~~lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA 482 (509)
T PF13654_consen 403 EYDPDFYKLFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREA 482 (509)
T ss_dssp HHHHHHHHHHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHH
T ss_pred HhCHHHHhCCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHH
Confidence 4456777776544 443 34666655544 456677776 89999999999876342 366788899999
Q ss_pred HHHHhhhCCCCccHHHHHHHHH
Q 012719 416 SVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 416 ~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+|...+.+.|+.+||..|+.
T Consensus 483 ~~~A~~~~~~~I~~~~V~~Ai~ 504 (509)
T PF13654_consen 483 NYWARKEGAKVITAEHVEQAIE 504 (509)
T ss_dssp HHHHHHCT-SSB-HHHHHHHHH
T ss_pred HHHHHHhCCCccCHHHHHHHHH
Confidence 9999989999999999999986
No 276
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.86 E-value=0.016 Score=59.09 Aligned_cols=55 Identities=20% Similarity=0.104 Sum_probs=42.5
Q ss_pred CCCCccccc-cchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 34 NAVPLAAGF-VGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 34 ~~~~~l~~l-iG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.|...++.+ +|++...+++..-++.+..|.. ..-++.|.-|+|||++.+.+....
T Consensus 18 VP~~Gl~~~~VGr~~e~~~l~~~l~~v~~G~s--~~kfi~G~YGsGKTf~l~~i~~~A 73 (416)
T PF10923_consen 18 VPRIGLDHIAVGREREIEALDRDLDRVADGGS--SFKFIRGEYGSGKTFFLRLIRERA 73 (416)
T ss_pred CCcccCcceeechHHHHHHHHHHHHHHhCCCC--eEEEEEeCCCCcHHHHHHHHHHHH
Confidence 355555555 8999988888877788877654 367788999999999999887655
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=97.83 E-value=3.8e-05 Score=73.81 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=43.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchhhhhhH--HHHHHHHHHHhccccCCceEEEccccccC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSEVKKTE--ILMENFRRAIGLRIKENKEVYEGEVTELS 142 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~~~~~~--~l~~~f~~a~~~~~~~~~ii~iDE~d~l~ 142 (458)
+.+++|+||||||||++|.+++..+. ....+..++..++......... .+...++.. ...+.++++||+..+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~----~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG----VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH----hcCCCEEEEcccccCC
Confidence 35899999999999999999987651 1122334444444322211100 133334332 1347899999997653
No 278
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.81 E-value=0.00013 Score=73.72 Aligned_cols=44 Identities=34% Similarity=0.514 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 47 EAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 47 ~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+.+..+..+++.+.. ..+.++.+.||.|||||++.+++...+..
T Consensus 5 eQ~~~~~~v~~~~~~--~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN--EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHHc--cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 344444555555554 34478999999999999999999998853
No 279
>PHA00729 NTP-binding motif containing protein
Probab=97.80 E-value=7.2e-05 Score=69.67 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=27.3
Q ss_pred HHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 56 VDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 56 ~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++.+..+.. .+++++|+||||||++|.+++..++
T Consensus 9 ~~~l~~~~f--~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 9 VSAYNNNGF--VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHhcCCe--EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444444 4899999999999999999999875
No 280
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=2.1e-05 Score=66.10 Aligned_cols=31 Identities=39% Similarity=0.853 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
+++.|||||||||+|+.||+.++ ++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~--~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG--FPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT--CEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CeEEEecc
Confidence 68999999999999999999998 55555544
No 281
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.76 E-value=0.00028 Score=70.26 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=94.2
Q ss_pred eEEEEcccchh---cHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCC---CCHHH
Q 012719 300 GVLFIDEVHML---DMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQI---YGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l---~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~---~~~~e 372 (458)
.+++|++++.+ +.+..+.|...++.++.. ++|+.+.... ..-..+...+...+....|.+ ++.++
T Consensus 63 rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~--------d~r~k~~k~l~k~~~~~~~~~~~~~~~~~ 134 (326)
T PRK07452 63 RLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKP--------DGRLKSTKLLQKLAEEKEFSLIPPWDTEG 134 (326)
T ss_pred eEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCc--------chHHHHHHHHHHceeEEEecCCCcccHHH
Confidence 78999998654 677889999999997766 6666542100 001123334555555545544 46678
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+.++++.+++..|+.++++++++|++.. .++++.+.+-++....++. .+...||.++|+..+.
T Consensus 135 l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~~-~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 135 LKQLVERTAQELGVKLTPEAAELLAEAV-GNDSRRLYNELEKLALYAE-NSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHh-CccHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc
Confidence 9999999999999999999999999999 8999999999997766531 2345699999998765
No 282
>PRK10536 hypothetical protein; Provisional
Probab=97.74 E-value=0.00022 Score=67.59 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=38.8
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHH-h-CCCccEEEecCCcc
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQE-L-GSKVPFCPMVGSEV 104 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~-l-~~~~p~i~l~~~~~ 104 (458)
..+..+.+....... ++.++... ..+++.||+|||||++|.++|.. + +.++..+.++.+.+
T Consensus 52 ~~~~~i~p~n~~Q~~---~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 52 RDTSPILARNEAQAH---YLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred cCCccccCCCHHHHH---HHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 445556665544332 23334332 37889999999999999999984 3 44455566655544
No 283
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.73 E-value=0.0018 Score=63.92 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=44.9
Q ss_pred cccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 39 AAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 39 l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
...+.+.+.....+..++. .....-|.+++++|-.|||||.+.+.+-+.++ .|.++++.-+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg--~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~~~vw~n~~ec 66 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLG--NNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--LENVWLNCVEC 66 (438)
T ss_pred ccCccchHHHHHHHHHHhC--CCCcccceeEEEeccCCCchhHHHHHHHhhcC--CcceeeehHHh
Confidence 3456777877776665542 11222346889999999999999999999996 77888766443
No 284
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.73 E-value=0.0003 Score=64.70 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=24.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEE
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVI 331 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~i 331 (458)
.|++|||+..++......|++..+.....+++
T Consensus 95 ~vliVDEasmv~~~~~~~ll~~~~~~~~klil 126 (196)
T PF13604_consen 95 DVLIVDEASMVDSRQLARLLRLAKKSGAKLIL 126 (196)
T ss_dssp SEEEESSGGG-BHHHHHHHHHHS-T-T-EEEE
T ss_pred cEEEEecccccCHHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999999998885544444
No 285
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.72 E-value=0.0036 Score=61.78 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=38.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHhhcCCHHHHHH
Q 012719 362 IIRTQIYGPAEMIQILAIRAQVEEI---VLDEESLAHLGEIARDTSLRHAVQ 410 (458)
Q Consensus 362 ~i~~~~~~~~e~~~il~~~~~~~~~---~i~~~~l~~i~~~~~~g~~r~a~~ 410 (458)
.+.++.++.+|.+.++..-....-+ ..++...+.+...+ +|++|.+..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhcc
Confidence 6789999999999999876654433 46677888888888 999998653
No 286
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.69 E-value=5.7e-05 Score=68.49 Aligned_cols=38 Identities=26% Similarity=0.611 Sum_probs=31.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhh
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVK 110 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~ 110 (458)
++++|||||||||+|+.||+.++ +.+++.++++..++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~----~~~is~~d~lr~~~~ 39 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG----FTHLSAGDLLRAEIK 39 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CeEEECChHHHHHHh
Confidence 68999999999999999999987 677777777665544
No 287
>PRK14532 adenylate kinase; Provisional
Probab=97.69 E-value=5.9e-05 Score=68.82 Aligned_cols=39 Identities=26% Similarity=0.522 Sum_probs=32.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhh
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVK 110 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~ 110 (458)
++++.|||||||||+|+.||+.++ +.+++..+++..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g----~~~is~~d~lr~~~~ 40 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG----MVQLSTGDMLRAAIA 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC----CeEEeCcHHHHHHHH
Confidence 589999999999999999999987 566777777666543
No 288
>PLN02674 adenylate kinase
Probab=97.67 E-value=0.00011 Score=69.53 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=41.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~ 123 (458)
...++|.||||+||||+|+.||+.++ +.+++..+++..++.....+...++..+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~----~~his~GdllR~~i~~~s~~g~~i~~~~ 84 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAAVAAKTPLGIKAKEAM 84 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CcEEchhHHHHHHHhccChhhHHHHHHH
Confidence 36799999999999999999999987 7788888888777654433444444443
No 289
>PRK14531 adenylate kinase; Provisional
Probab=97.66 E-value=6e-05 Score=68.56 Aligned_cols=39 Identities=36% Similarity=0.673 Sum_probs=31.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhh
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~ 109 (458)
..+++.|||||||||+++.||+.++ +.+++..+++...+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g----~~~is~gd~lr~~~ 41 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG----LRHLSTGDLLRSEV 41 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC----CCeEecccHHHHHH
Confidence 4699999999999999999999998 44566666665544
No 290
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.65 E-value=4.4e-05 Score=68.99 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=38.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHH
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRR 121 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~ 121 (458)
.+++.||||+||||+|+.||+.++ +.+++..++....+...+.+....+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~----i~hlstgd~~r~~~~~~t~lg~~~k~ 51 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG----LPHLDTGDILRAAIAERTELGEEIKK 51 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CcEEcHhHHhHhhhccCChHHHHHHH
Confidence 589999999999999999999965 88888877776666555444444443
No 291
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.65 E-value=0.0008 Score=67.26 Aligned_cols=127 Identities=19% Similarity=0.131 Sum_probs=92.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhc---cC-C-C-eEEEecCCccccccCCCCCCCCCC---ChhHhhhhcccccCCCCH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALES---SL-S-P-IVIFATNRGICNIRGTDMNSPHGI---PLDLLDRLVIIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~---~~-~-~-i~il~tn~~~~~~~~~~~~~~~~l---~~~l~sR~~~i~~~~~~~ 370 (458)
.|++|++++.+.....+..++.+.+ ++ . . ++++.++.. .....+ ...+.+++..+.+.+++.
T Consensus 78 klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~---------~~~~k~~k~~k~~~~~~~~~~~~~~~~ 148 (340)
T PRK05574 78 KLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKL---------DKAKKKSAWFKALKKKAVVVEAQPPKE 148 (340)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcC---------CHHHHhhHHHHHHHhCceEEEcCCCCH
Confidence 7999999999976533332333332 23 2 2 344443210 111123 346777888889999999
Q ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 371 AEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 371 ~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.++...+...++..|+.++++++++|++.. .++++.+.+-++....++ +...||.++|+..+.-.
T Consensus 149 ~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~El~KL~l~~---~~~~It~~~I~~~i~~~ 213 (340)
T PRK05574 149 AELPQWIQQRLKQQGLQIDAAALQLLAERV-EGNLLALAQELEKLALLY---PDGKITLEDVEEAVPDS 213 (340)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CchHHHHHHHHHHHHhhc---CCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999 899999999999777665 22339999999876643
No 292
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.64 E-value=8.8e-05 Score=66.45 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=35.6
Q ss_pred eEEEEcccchh---cHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhh--hcccccCCCCHHHHH
Q 012719 300 GVLFIDEVHML---DMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDR--LVIIRTQIYGPAEMI 374 (458)
Q Consensus 300 ~Vl~IDE~~~l---~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR--~~~i~~~~~~~~e~~ 374 (458)
.+++|||+..| .+...+++.++++ ++.+++...-. .....+...+.+| +.++.+.+-+.+.+.
T Consensus 97 ~liviDEIG~mEl~~~~F~~~v~~~l~-s~~~vi~vv~~-----------~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 97 DLIVIDEIGKMELKSPGFREAVEKLLD-SNKPVIGVVHK-----------RSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp HEEEE---STTCCC-CHHHHHHHHHHC-TTSEEEEE--S-----------S--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHHc-CCCcEEEEEec-----------CCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 69999999998 5778899999999 33332222220 1134566778877 566677666655554
No 293
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.63 E-value=6e-05 Score=67.48 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
++..++|+||||||||++|+.||+.++ ++++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~--~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG--YDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC--CCEEEC
Confidence 456899999999999999999999998 567653
No 294
>PRK08118 topology modulation protein; Reviewed
Probab=97.59 E-value=6.1e-05 Score=67.47 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
+.+++.||||+||||+|+.|++.++ +|+++++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~--~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN--IPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCceecch
Confidence 3689999999999999999999998 66777654
No 295
>PF05729 NACHT: NACHT domain
Probab=97.58 E-value=0.0011 Score=58.46 Aligned_cols=25 Identities=40% Similarity=0.765 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
|-++++|+||+|||++++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3578999999999999999998874
No 296
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.57 E-value=8.8e-05 Score=61.24 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 012719 69 LLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 297
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0011 Score=61.64 Aligned_cols=134 Identities=22% Similarity=0.222 Sum_probs=95.7
Q ss_pred cccceEEEEcccchh-----------cHHHHHHHHHHhhcc-----CCC-eEEEecCCccccccCCCCCCCCCCChhHhh
Q 012719 296 ELVPGVLFIDEVHML-----------DMECFSYLNRALESS-----LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLD 358 (458)
Q Consensus 296 ~~~~~Vl~IDE~~~l-----------~~~~~~~Ll~~lE~~-----~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s 358 (458)
|-.+.|+|.||++.+ +.+.|.+.|.++... ... -+|++||+ ..-|.|+|+.
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr------------idild~allr 305 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR------------IDILDPALLR 305 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc------------cccccHhhcC
Confidence 345789999999987 356788777776532 122 47889954 4566777762
Q ss_pred --hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHH
Q 012719 359 --RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEV 435 (458)
Q Consensus 359 --R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~ 435 (458)
|+. .+.|++++++...+||+.+..+.++.=- --++.|++.....+-...-..+.-|..+|...-+-.+|.+|.+-|
T Consensus 306 pgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfema 384 (404)
T KOG0728|consen 306 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 384 (404)
T ss_pred CCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHH
Confidence 443 3489999999999999988877665311 125677776634455666677888888887777788999999999
Q ss_pred HHhhhch
Q 012719 436 KALYLDA 442 (458)
Q Consensus 436 ~~~~~~~ 442 (458)
++-.+..
T Consensus 385 v~kvm~k 391 (404)
T KOG0728|consen 385 VAKVMQK 391 (404)
T ss_pred HHHHHhc
Confidence 8866544
No 298
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.53 E-value=0.0025 Score=60.77 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=69.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCcccccc----CC-----CCCCCCCCChhHhhhhcccccCCCC-
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIR----GT-----DMNSPHGIPLDLLDRLVIIRTQIYG- 369 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~----~~-----~~~~~~~l~~~l~sR~~~i~~~~~~- 369 (458)
|+||+||+..|..+-|..|+|++|+... +=+++++...+.+ ++ ..-....+...+.-|+..-+|..+.
T Consensus 284 gmlfldeigelgadeqamllkaieekrf--~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl 361 (531)
T COG4650 284 GMLFLDEIGELGADEQAMLLKAIEEKRF--YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 (531)
T ss_pred ceEehHhhhhcCccHHHHHHHHHHhhcc--CCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeecccc
Confidence 9999999999999999999999998642 1123332211000 00 0111222333444555444443332
Q ss_pred ---HHHH----HHHHHHHHHhcC--CccCHHHHHHHHHHhh------cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 370 ---PAEM----IQILAIRAQVEE--IVLDEESLAHLGEIAR------DTSLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 370 ---~~e~----~~il~~~~~~~~--~~i~~~~l~~i~~~~~------~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
.+++ .--|..++...| +-+..++-..-..++. .|+.|.+...+.++..+| ..+.||.+-|+.
T Consensus 362 ~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla---d~grit~~~ve~ 438 (531)
T COG4650 362 RQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA---DSGRITLDVVED 438 (531)
T ss_pred ccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh---cCCceeHHHHHH
Confidence 1111 111223333333 3455555544443321 266777666666555554 567788888775
Q ss_pred HH
Q 012719 435 VK 436 (458)
Q Consensus 435 ~~ 436 (458)
-+
T Consensus 439 ei 440 (531)
T COG4650 439 EI 440 (531)
T ss_pred HH
Confidence 43
No 299
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.53 E-value=7.6e-05 Score=65.55 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=38.6
Q ss_pred EEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHH
Q 012719 71 LAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123 (458)
Q Consensus 71 l~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~ 123 (458)
+.||||+|||++|+.||+.++ +++++..++...++.....+.+.++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~----~~~is~~~llr~~~~~~s~~g~~i~~~l 49 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG----LVHISVGDLLREEIKSDSELGKQIQEYL 49 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT----SEEEEHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC----cceechHHHHHHHHhhhhHHHHHHHHHH
Confidence 579999999999999999997 7888888888877755444555555544
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0059 Score=61.92 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++|+||+|+||||++.-+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999866
No 301
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.50 E-value=0.0075 Score=70.20 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=41.6
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+...+++++|.+...+.+..++. ......+-+-++||+|+||||+|++++..+.
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~---l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLH---LESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHc---cccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 44568899999988777665553 2333346788999999999999999988774
No 302
>PTZ00202 tuzin; Provisional
Probab=97.49 E-value=0.018 Score=58.70 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 36 VPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 36 ~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.....+++|.+....++..++.....+ .++-++++||+|||||++++.+...++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~--~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTA--HPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCC--CceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345789999999988887776543333 235788999999999999999998776
No 303
>PRK03839 putative kinase; Provisional
Probab=97.49 E-value=0.0001 Score=66.69 Aligned_cols=31 Identities=26% Similarity=0.611 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
.++|.|+||+||||+++.||+.++ ++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~--~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG--YEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEehh
Confidence 488999999999999999999998 6677654
No 304
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.0001 Score=63.26 Aligned_cols=33 Identities=30% Similarity=0.645 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++|++|.||||||+++..+|..++ ++++.++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~--~~~i~isd 40 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG--LEYIEISD 40 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC--CceEehhh
Confidence 4899999999999999999999998 66777644
No 305
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.48 E-value=0.01 Score=67.30 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=61.2
Q ss_pred eEEEEcccchhcHH-HHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCC-hhHh--hhhcccccC--CCCHHH
Q 012719 300 GVLFIDEVHMLDME-CFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIP-LDLL--DRLVIIRTQ--IYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~-~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~-~~l~--sR~~~i~~~--~~~~~e 372 (458)
-+++||++|.++.. ....|..++...+.. .+|+++ | +.| .++ ..++ ..+..+... +++.+|
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s-R----------~~~-~~~~~~l~~~~~~~~l~~~~l~f~~~e 190 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS-R----------NLP-PLGIANLRVRDQLLEIGSQQLAFDHQE 190 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe-C----------CCC-CCchHhHHhcCcceecCHHhCCCCHHH
Confidence 79999999999744 455666667765554 555555 2 111 121 2222 333334333 889999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHH
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHA 408 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a 408 (458)
....+... .+..++++.+..|.+.+ .|.|-.+
T Consensus 191 ~~~ll~~~---~~~~~~~~~~~~l~~~t-~Gwp~~l 222 (903)
T PRK04841 191 AQQFFDQR---LSSPIEAAESSRLCDDV-EGWATAL 222 (903)
T ss_pred HHHHHHhc---cCCCCCHHHHHHHHHHh-CChHHHH
Confidence 99988654 35678999999999999 8877553
No 306
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.48 E-value=0.00017 Score=67.93 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=32.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhh
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKK 111 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~ 111 (458)
..+++.||||+||||+|+.||+.++ +.+++..+++...+..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g----~~~is~gdllr~~~~~ 47 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN----LKHINMGNILREEIKA 47 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CcEEECChHHHHHhhc
Confidence 4699999999999999999999998 5556666666555443
No 307
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0023 Score=64.45 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++|+||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999864
No 308
>PRK07261 topology modulation protein; Provisional
Probab=97.45 E-value=0.0003 Score=63.30 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhh
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~ 109 (458)
.+++.|+||+||||+|+.|+..++ +|.++++.-.+...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~--~~~i~~D~~~~~~~~~ 41 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN--CPVLHLDTLHFQPNWQ 41 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC--CCeEecCCEEeccccc
Confidence 588999999999999999999987 6788876654443333
No 309
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.44 E-value=0.00017 Score=65.85 Aligned_cols=37 Identities=30% Similarity=0.615 Sum_probs=29.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhh
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~ 109 (458)
+++.||||||||++|+.||+.++ +..++..+++....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~----~~~i~~~~l~~~~~ 38 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG----LPHISTGDLLREEI 38 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CeEEECcHHHHHHH
Confidence 78999999999999999999987 44566666654443
No 310
>PRK04296 thymidine kinase; Provisional
Probab=97.44 E-value=0.0023 Score=58.61 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.-.+++||||+|||+++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 357889999999999999988766
No 311
>PRK00625 shikimate kinase; Provisional
Probab=97.44 E-value=0.00014 Score=65.46 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
+++|.|+||+|||++++.+|+.++ .+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~--~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS--LPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCEEEhh
Confidence 689999999999999999999998 6677764
No 312
>PLN02200 adenylate kinase family protein
Probab=97.41 E-value=0.00025 Score=67.07 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=33.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhh
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVK 110 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~ 110 (458)
+..+++.|||||||||+|+.||+.++ +.+++.++++..++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g----~~his~gdllR~~i~ 83 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG----FKHLSAGDLLRREIA 83 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC----CeEEEccHHHHHHHh
Confidence 35788999999999999999999987 567888887765443
No 313
>PRK13947 shikimate kinase; Provisional
Probab=97.41 E-value=0.00016 Score=64.76 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
++++.|+||||||++|+.||+.++ .+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg--~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS--FGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC--CCEEECc
Confidence 799999999999999999999998 6676644
No 314
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.39 E-value=0.0055 Score=61.01 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=64.3
Q ss_pred cceEEEEcccchhcH-----------HH-HHHHHHHhhcc--------------CCCe-EEEecCCccccccCCCCCCCC
Q 012719 298 VPGVLFIDEVHMLDM-----------EC-FSYLNRALESS--------------LSPI-VIFATNRGICNIRGTDMNSPH 350 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~-----------~~-~~~Ll~~lE~~--------------~~~i-~il~tn~~~~~~~~~~~~~~~ 350 (458)
.+.||||||+|.+.+ .. ...|+..|+.+ ...+ +|.+| |+|.
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTT------------Nrpd 279 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTG------------NDFS 279 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeC------------CCcc
Confidence 469999999998742 12 35677776542 2334 44455 8899
Q ss_pred CCChhHhh--hhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHh
Q 012719 351 GIPLDLLD--RLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIA 400 (458)
Q Consensus 351 ~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~ 400 (458)
.|+|+|++ ||... +..|+.++..+|++.+++..++ +.+.+..|++..
T Consensus 280 ~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f 328 (413)
T PLN00020 280 TLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTF 328 (413)
T ss_pred cCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcC
Confidence 99999998 88664 4578999999999998887654 467777777765
No 315
>PF14516 AAA_35: AAA-like domain
Probab=97.39 E-value=0.019 Score=57.29 Aligned_cols=102 Identities=21% Similarity=0.186 Sum_probs=60.7
Q ss_pred ceEEEEcccchhcH------HHHHHHHHHhhccC-----CCe-EEEecCCccccccCCCCCCCCCCChhHhhhhcccccC
Q 012719 299 PGVLFIDEVHMLDM------ECFSYLNRALESSL-----SPI-VIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQ 366 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~------~~~~~Ll~~lE~~~-----~~i-~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~ 366 (458)
+-||+|||++.+-. +.+..|+.+.+... ..+ ++++...... ......+ +++ .-..-+.++
T Consensus 128 ~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~-~~~~~~~------SPF-NIg~~i~L~ 199 (331)
T PF14516_consen 128 PLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY-IILDINQ------SPF-NIGQPIELP 199 (331)
T ss_pred CEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc-cccCCCC------CCc-ccccceeCC
Confidence 37999999998853 45555556655432 122 3333311111 0000011 223 233456799
Q ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 367 IYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 367 ~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
++|.+|+...++.. +..++++.++.|.... .|-|.-...++.
T Consensus 200 ~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~t-gGhP~Lv~~~~~ 241 (331)
T PF14516_consen 200 DFTPEEVQELAQRY----GLEFSQEQLEQLMDWT-GGHPYLVQKACY 241 (331)
T ss_pred CCCHHHHHHHHHhh----hccCCHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 99999998876654 6778899999999999 777754444433
No 316
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.39 E-value=0.0037 Score=60.83 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHH-HH--HHhCCCccEEEecCC
Q 012719 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALG-IC--QELGSKVPFCPMVGS 102 (458)
Q Consensus 42 liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~a-lA--~~l~~~~p~i~l~~~ 102 (458)
+.|...-...+..+++...-... ++.+++.||.|+|||.+... ++ ++.+.++-.+++++.
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gE-snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~ 88 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGE-SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGE 88 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcC-CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECcc
Confidence 45555555555555554433222 36899999999999986443 33 356655556666663
No 317
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.38 E-value=0.0048 Score=58.19 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.+-.++||+|||||.+++.||+.+|.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 46678999999999999999999994
No 318
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.38 E-value=0.0002 Score=66.60 Aligned_cols=38 Identities=34% Similarity=0.644 Sum_probs=30.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhh
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVK 110 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~ 110 (458)
+++.||||+||||+|+.||+.++ +.+++..++....+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g----~~~is~gdllr~~~~ 39 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG----LPHISTGDLLRAEIK 39 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CCeeehhHHHHHhhc
Confidence 78999999999999999999987 555666666554443
No 319
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.011 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
++.++|.||+|+||||++..||..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 3678999999999999999999877
No 320
>PLN02459 probable adenylate kinase
Probab=97.37 E-value=0.00027 Score=67.35 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=40.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAI 123 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~ 123 (458)
.+++|.||||+||||+|..||+.++ +.+++..+++..++.....+...++..+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~ei~~~t~lg~~i~~~~ 82 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG----VPHIATGDLVREEIKSSGPLGAQLKEIV 82 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC----CcEEeCcHHHHHHHhccchhHHHHHHHH
Confidence 3688899999999999999999987 7778888887766654444444444444
No 321
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.36 E-value=0.00032 Score=65.53 Aligned_cols=40 Identities=33% Similarity=0.532 Sum_probs=31.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhh
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKK 111 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~ 111 (458)
.++++||||+|||++|+.||+.++ +.+++..++....+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~----~~~is~~dl~r~~~~~ 41 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG----IPHISTGDMLRAAVKA 41 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcEEECCccHHHHHhc
Confidence 489999999999999999999988 5566666666554443
No 322
>PRK05629 hypothetical protein; Validated
Probab=97.34 E-value=0.0034 Score=62.30 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=93.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
.+++++..+.......+.++..+++++.. ++|+.+... .....+-..+......+.+.++.+.++...+.
T Consensus 66 rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~---------~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~ 136 (318)
T PRK05629 66 RVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGG---------GRTKSMVPKLEKIAVVHEAAKLKPRERPGWVT 136 (318)
T ss_pred eEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCc---------chhhHHHHHHHhcceEeeCCCCCHHHHHHHHH
Confidence 78999988877666778888888888666 666655211 00111222444445566888999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++..|..+++++++++++.. .+++..+.+-++....+ . .+.||.++|+..+.
T Consensus 137 ~~~~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~~~---~-~~~It~e~V~~~v~ 190 (318)
T PRK05629 137 QEFKNHGVRPTPDVVHALLEGV-GSDLRELASAISQLVED---T-QGNVTVEKVRAYYV 190 (318)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHHhc---C-CCCcCHHHHHHHhC
Confidence 9999999999999999999999 88999988888865432 2 34699999998754
No 323
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.33 E-value=0.00019 Score=66.93 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=41.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc-c-c--------chhhh-hhHHHHHHHHHHHhccccCCceEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE-V-Y--------SSEVK-KTEILMENFRRAIGLRIKENKEVYE 135 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~-~-~--------~~~~~-~~~~l~~~f~~a~~~~~~~~~ii~i 135 (458)
..+||||+||+|||++|+.++.. ..++....+. . . .-... ..+.+.+.+... .........|+|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~----~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~-~~~~~~ydtVVI 87 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK----TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQ-NIQAVKYDNIVI 87 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC----CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHH-HhccccCCEEEE
Confidence 56999999999999999999732 1233332211 0 0 00001 112333333322 222355789999
Q ss_pred ccccccCc
Q 012719 136 GEVTELSP 143 (458)
Q Consensus 136 DE~d~l~~ 143 (458)
|.++.+..
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99988754
No 324
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.33 E-value=0.00022 Score=62.48 Aligned_cols=31 Identities=32% Similarity=0.604 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
+++++||||+|||++|+.||..++ .+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~--~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG--LPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC--CCEEEch
Confidence 478999999999999999999998 5566543
No 325
>PRK13949 shikimate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=64.17 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
+++++.||||+|||++++.||+.++ ++++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~--~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG--LSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CCeeccc
Confidence 4799999999999999999999998 6677755
No 326
>PRK07914 hypothetical protein; Reviewed
Probab=97.32 E-value=0.0023 Score=63.52 Aligned_cols=124 Identities=11% Similarity=0.131 Sum_probs=92.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhh-hcccccCCC-CHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDR-LVIIRTQIY-GPAEMIQI 376 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR-~~~i~~~~~-~~~e~~~i 376 (458)
.+++++++..+..+..+.|...++.++.. ++|+.++.. .....+-..+... +..+.+.++ +..++.+.
T Consensus 66 RlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~---------~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~w 136 (320)
T PRK07914 66 RVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGG---------GRAKALANQLRKLGAEVHPCARITKAAERADF 136 (320)
T ss_pred eEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCC---------cchhHHHHHHHHCCCEEEecCCCCCHHHHHHH
Confidence 79999998877777788899999998775 666665211 0001111233322 235588888 99999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
++.+++..|+.++++++.+|++.. .+++..+.+-++... + ..| +.||.++|+..+.
T Consensus 137 i~~~a~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~--~-~~~-~~It~e~V~~~v~ 192 (320)
T PRK07914 137 VRKEFRSLRVKVDDDTVTALLDAV-GSDLRELASACSQLV--A-DTG-GAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHh--c-CCC-CCcCHHHHHHHcC
Confidence 999999999999999999999999 899999888888442 2 223 5699999998865
No 327
>PRK06217 hypothetical protein; Validated
Probab=97.32 E-value=0.00023 Score=64.76 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.+++.|+||+||||+|+.|++.++ +|++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~--~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD--IPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CcEEEcCc
Confidence 589999999999999999999998 66776654
No 328
>PRK14526 adenylate kinase; Provisional
Probab=97.31 E-value=0.00028 Score=65.61 Aligned_cols=39 Identities=26% Similarity=0.611 Sum_probs=30.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhh
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVK 110 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~ 110 (458)
.++|+|||||||||+|+.||+.++ +..++..++....+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~----~~~is~G~llr~~~~ 40 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN----YYHISTGDLFRENIL 40 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CceeecChHHHHhcc
Confidence 488999999999999999999987 455666666554443
No 329
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.31 E-value=0.002 Score=71.07 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCe
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPI 329 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i 329 (458)
.+++|||+.+++......|++..+.....+
T Consensus 441 ~llIvDEasMv~~~~~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 441 DVLVIDEAGMVGSRQMARVLKEAEEAGAKV 470 (744)
T ss_pred cEEEEECcccCCHHHHHHHHHHHHhcCCEE
Confidence 799999999999998888988766554443
No 330
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0002 Score=63.67 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.+++|.|++|+||||+.++||+.|+ .+|+.++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~--~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN--LPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC--CCcccchH
Confidence 5799999999999999999999999 67887543
No 331
>PRK14530 adenylate kinase; Provisional
Probab=97.30 E-value=0.00021 Score=66.76 Aligned_cols=25 Identities=36% Similarity=0.721 Sum_probs=23.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++|.||||+||||+|+.||+.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999998
No 332
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0016 Score=66.68 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=90.2
Q ss_pred cceEEEEcccchhc-----------HHHHHHHHHHhhccCC--C-eEEEecCCccccccCCCCCCCCCCChhHh--hhhc
Q 012719 298 VPGVLFIDEVHMLD-----------MECFSYLNRALESSLS--P-IVIFATNRGICNIRGTDMNSPHGIPLDLL--DRLV 361 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~-----------~~~~~~Ll~~lE~~~~--~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~--sR~~ 361 (458)
.++|+||||++... ....|-||--|+.... . |+|-+| |-|+.|.++|. .||.
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT------------Nfpe~LD~AL~RPGRFD 463 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT------------NFPEALDKALTRPGRFD 463 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc------------CChhhhhHHhcCCCccc
Confidence 36899999999873 2355666666665543 3 455555 66788888877 3665
Q ss_pred cc-ccCCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 362 II-RTQIYGPAEMIQILAIRAQVEEI--VLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 362 ~i-~~~~~~~~e~~~il~~~~~~~~~--~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+. .++.++-.-..+||.....+.-. +++.. .|++=....+-..+.+++..|...|...|...+|..|++.+-+-
T Consensus 464 ~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~---iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 464 RHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPK---IIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDR 540 (752)
T ss_pred eeEecCCCCcccHHHHHHHHHhcCCcccCCCHh---HhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhh
Confidence 44 88889988999999988766433 23333 22222212245788999999999999999999999999988764
Q ss_pred hh
Q 012719 439 YL 440 (458)
Q Consensus 439 ~~ 440 (458)
.+
T Consensus 541 Il 542 (752)
T KOG0734|consen 541 IL 542 (752)
T ss_pred ee
Confidence 33
No 333
>PRK14527 adenylate kinase; Provisional
Probab=97.29 E-value=0.0003 Score=64.42 Aligned_cols=40 Identities=30% Similarity=0.615 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhh
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~ 109 (458)
+.-+++.||||+||||+|+.||+.++ +..++..++.....
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~----~~~is~gd~~r~~~ 45 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELG----LKKLSTGDILRDHV 45 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC----CCCCCccHHHHHHH
Confidence 35799999999999999999999987 44555555554433
No 334
>PRK14528 adenylate kinase; Provisional
Probab=97.28 E-value=0.00036 Score=63.68 Aligned_cols=37 Identities=27% Similarity=0.697 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
+.+++.||||+|||++|+.+|+.++ ++. ++..++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~--~~~--is~~~~lr~ 38 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS--IPQ--ISTGDILRE 38 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCe--eeCCHHHHH
Confidence 3689999999999999999999998 334 444555443
No 335
>PRK14529 adenylate kinase; Provisional
Probab=97.26 E-value=0.0003 Score=65.82 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=35.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHH
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRA 122 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a 122 (458)
+++|.||||+||||+|+.||+.++ +.+++..++...++.....+.+.++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~----~~~is~gdllr~~i~~~t~lg~~i~~~ 52 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD----LAHIESGAIFREHIGGGTELGKKAKEY 52 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CCCcccchhhhhhccCCChHHHHHHHH
Confidence 588999999999999999999998 445666666655544332333333333
No 336
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.25 E-value=0.00021 Score=61.74 Aligned_cols=23 Identities=48% Similarity=1.028 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 012719 69 LLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+++.|||||||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999999987
No 337
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.25 E-value=0.00027 Score=63.69 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++.++|.||||+||||+|+.|++.++ .++++++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~--~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA--EPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC--CCccccCc
Confidence 45789999999999999999999986 34555443
No 338
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.25 E-value=0.00064 Score=65.79 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=58.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC-ccEEEecCC-cccchh-----
Q 012719 36 VPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSK-VPFCPMVGS-EVYSSE----- 108 (458)
Q Consensus 36 ~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~-~p~i~l~~~-~~~~~~----- 108 (458)
..+++++.-.......+..+ +......+.+++|.||+||||||+++++...+... ..++.+..+ ++....
T Consensus 100 ~~sle~l~~~~~~~~~~~~~---l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~ 176 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEF---LRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQ 176 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHH---HHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEE
T ss_pred cccHhhccCchhhHHHHHHH---HhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEE
Confidence 44678887665554444333 33332334689999999999999999999998665 445544432 221111
Q ss_pred --hh-hhHHHHHHHHHHHhccccCCceEEEccccc
Q 012719 109 --VK-KTEILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 109 --~~-~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
.. ......+.++.+.. ..|.+++++|+-.
T Consensus 177 ~~~~~~~~~~~~~l~~~LR---~~pD~iiigEiR~ 208 (270)
T PF00437_consen 177 IQTRRDEISYEDLLKSALR---QDPDVIIIGEIRD 208 (270)
T ss_dssp EEEETTTBSHHHHHHHHTT---S--SEEEESCE-S
T ss_pred EEeecCcccHHHHHHHHhc---CCCCcccccccCC
Confidence 11 11136666666654 4599999999854
No 339
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.23 E-value=0.00053 Score=60.12 Aligned_cols=23 Identities=43% Similarity=0.800 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 012719 68 ALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.++++||||+|||+++..++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999887
No 340
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0055 Score=66.19 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=97.4
Q ss_pred cceEEEEcccchhc------------HH---HHHHHHHHhhccC--CC-eEEEecCCccccccCCCCCCCCCCChhHhh-
Q 012719 298 VPGVLFIDEVHMLD------------ME---CFSYLNRALESSL--SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLD- 358 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~------------~~---~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s- 358 (458)
.|.|+||||++... .+ .+|-||.-|+... .. +++.+| +.+..|.++|+.
T Consensus 403 aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~t------------nr~d~ld~allrp 470 (774)
T KOG0731|consen 403 APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAAT------------NRPDILDPALLRP 470 (774)
T ss_pred CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEecc------------CCccccCHHhcCC
Confidence 46899999999863 22 4555555566443 23 455555 667788888883
Q ss_pred -hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHH
Q 012719 359 -RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVK 436 (458)
Q Consensus 359 -R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~ 436 (458)
||... .++.++.....+|++.++......-++.-+..|+.+...-+...+.+++..|..+|...+...|+..|+..|+
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHH
Confidence 56444 8999999999999999998888875666666688887444677888899999999999999999999999988
Q ss_pred H
Q 012719 437 A 437 (458)
Q Consensus 437 ~ 437 (458)
.
T Consensus 551 ~ 551 (774)
T KOG0731|consen 551 E 551 (774)
T ss_pred H
Confidence 7
No 341
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.027 Score=58.89 Aligned_cols=25 Identities=36% Similarity=0.664 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++|+||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998765
No 342
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.20 E-value=0.0046 Score=62.38 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
++..+++.||||+|||++++.+++.+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 3568999999999999999999998753
No 343
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00032 Score=61.12 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=24.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
+-+.|||||||||+|+.||..+| ++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g--l~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG--LKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC--Cceee
Confidence 56889999999999999999999 44543
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.20 E-value=0.00072 Score=57.86 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=28.5
Q ss_pred HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 57 DMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 57 ~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
..+.....++..++|.|+.|+|||++++.+++.++.
T Consensus 13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 333333445567999999999999999999999974
No 345
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.19 E-value=0.0014 Score=59.76 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=43.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc-h---hh----------hhhH-HHHHHHHHHHhccccCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS-S---EV----------KKTE-ILMENFRRAIGLRIKEN 130 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~-~---~~----------~~~~-~l~~~f~~a~~~~~~~~ 130 (458)
+..+++.||+|+||||++++++..+......+.+....... . ++ +... ...+.++.+.. ..|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR---~~p 101 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALR---MRP 101 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhc---cCC
Confidence 46899999999999999999999885443344443321111 0 00 0001 24444544443 449
Q ss_pred ceEEEcccc
Q 012719 131 KEVYEGEVT 139 (458)
Q Consensus 131 ~ii~iDE~d 139 (458)
..++++|+-
T Consensus 102 d~i~igEir 110 (186)
T cd01130 102 DRIIVGEVR 110 (186)
T ss_pred CEEEEEccC
Confidence 999999983
No 346
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.18 E-value=0.0015 Score=60.60 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=32.7
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCCc
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGSE 103 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~~ 103 (458)
+..|...++-++++||||||||+++..++... ......+.++..+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34566667789999999999999999998755 2223466666544
No 347
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.18 E-value=0.005 Score=61.76 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=88.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhH--hhhhcccccCCCCHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDL--LDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l--~sR~~~i~~~~~~~~e~~~i 376 (458)
.++++.... ....+.|...++.++.. ++|+..+.- .....+...+ ......+.+.+++..++.++
T Consensus 83 rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~---------~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~ 150 (343)
T PRK06585 83 RLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDL---------KKGSSLRKLFETAAYAAAIPCYADDERDLARL 150 (343)
T ss_pred eEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCC---------CcccHHHHHHhcCCCeeEEecCCCCHHHHHHH
Confidence 688888543 34556677778876555 555543210 1111111211 11223457788999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+..+++..|+.++++++++|++.. .++++.+.+-|+....++ .+...||.++|+..+.-
T Consensus 151 i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~--~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 151 IDDELAEAGLRITPDARALLVALL-GGDRLASRNEIEKLALYA--HGKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHhCC
Confidence 999999999999999999999999 999999999999877765 23457999999988663
No 348
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.18 E-value=0.0096 Score=62.42 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=56.9
Q ss_pred cceEEEEcccchhcH------------HHHHHHHHHhhccC--CC-eEEEecCCccccccCCCCCCCCCCChhHhh--hh
Q 012719 298 VPGVLFIDEVHMLDM------------ECFSYLNRALESSL--SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLD--RL 360 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~------------~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s--R~ 360 (458)
.+.|+||||++.+-. ...+.|+..|+... .. ++|.+| |.+..|+|++++ ||
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~AT------------N~~d~LDpALlRpGRf 356 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGAS------------NREDMIDPAILRPGRL 356 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEecc------------CChhhCCHhhcCcccc
Confidence 358999999998732 24567888887543 23 566666 678899999987 88
Q ss_pred cc-cccCCCCHHHHHHHHHHHHHh
Q 012719 361 VI-IRTQIYGPAEMIQILAIRAQV 383 (458)
Q Consensus 361 ~~-i~~~~~~~~e~~~il~~~~~~ 383 (458)
.. +.|++|+.++..+|++.....
T Consensus 357 D~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 357 DVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ceEEEeCCCCHHHHHHHHHHHhhc
Confidence 65 599999999999999887653
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.17 E-value=0.0014 Score=65.34 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=46.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC-Ccccc-h----------h--hhhhH-HHHHHHHHHHhccccCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG-SEVYS-S----------E--VKKTE-ILMENFRRAIGLRIKEN 130 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~-~~~~~-~----------~--~~~~~-~l~~~f~~a~~~~~~~~ 130 (458)
+.++++.|++||||||+.+++..++...-..+.+-. .++.- . . .+... .+.++++.+.. ..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR---~~P 236 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLR---LRP 236 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhc---cCC
Confidence 468999999999999999999998865444444422 12211 0 0 11112 25566666654 459
Q ss_pred ceEEEcccc
Q 012719 131 KEVYEGEVT 139 (458)
Q Consensus 131 ~ii~iDE~d 139 (458)
..++++|+-
T Consensus 237 D~IivGEiR 245 (332)
T PRK13900 237 DRIIVGELR 245 (332)
T ss_pred CeEEEEecC
Confidence 999999984
No 350
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.17 E-value=0.0039 Score=61.18 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=43.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC--eEEEecCCccccccCCCCCCCCCCC--hhHhhhhcccccCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP--IVIFATNRGICNIRGTDMNSPHGIP--LDLLDRLVIIRTQI 367 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~--i~il~tn~~~~~~~~~~~~~~~~l~--~~l~sR~~~i~~~~ 367 (458)
.||-+||++--++.-.-.|.++++.-... +++.++|..+...+-+-.+...-|| ..|.++|.++.++.
T Consensus 132 ~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~ 203 (367)
T COG1485 132 RVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDG 203 (367)
T ss_pred CEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecC
Confidence 79999999999988888888888876544 5666777665443322222222222 24667876654433
No 351
>PRK06547 hypothetical protein; Provisional
Probab=97.17 E-value=0.00066 Score=61.04 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
+..+++.|++|||||++|+.|++.++ ++++.+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~ 46 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG--FQLVHL 46 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC--CCeecc
Confidence 35788899999999999999999987 555554
No 352
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.17 E-value=0.00038 Score=60.34 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
+.+.|+||||||++|+.||..++ +|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~--~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG--LPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--Cceeccc
Confidence 57899999999999999999998 6777765
No 353
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.16 E-value=0.00037 Score=63.22 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
-+++.|||||||||+|+.+++.++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999999987
No 354
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.14 E-value=0.0018 Score=71.12 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=22.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALE 323 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE 323 (458)
.+++|||+.+++......|++.+.
T Consensus 418 ~llIvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred CEEEEeccccCCHHHHHHHHHhCC
Confidence 899999999999999999998765
No 355
>PRK02496 adk adenylate kinase; Provisional
Probab=97.14 E-value=0.00054 Score=62.21 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=22.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.+++.||||+|||++|+.||+.++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987
No 356
>PRK13948 shikimate kinase; Provisional
Probab=97.14 E-value=0.00056 Score=62.09 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
++.+++|.|++|||||++++.||+.++ .+|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg--~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM--LHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEECC
Confidence 457899999999999999999999998 6688654
No 357
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.13 E-value=0.025 Score=54.37 Aligned_cols=119 Identities=19% Similarity=0.203 Sum_probs=74.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc---ccCCCCHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII---RTQIYGPAEMIQI 376 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i---~~~~~~~~e~~~i 376 (458)
+.+++||++.|+.++++-|.+..+....-++.++..+-.. ....+...-..+.||..+- .....+.+++..+
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~-----~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~ 241 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFK-----VLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEI 241 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhhCceEEEecChHHHh-----ccccchHHHHHHHHHhhhHhhhhhhhhhhHHHHHH
Confidence 8999999999999999999999888877666655532110 0111111122233433211 1122233555555
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCcc
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSIC 428 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it 428 (458)
....... .++.++..+.... .|+.|.+..++.-++..|...+..-++
T Consensus 242 ~~~~l~~----~~~~~v~~~~~~~-~g~~~~L~~~l~~~~~~a~~~~~~~~~ 288 (297)
T COG2842 242 AALVLPT----EDELVLMQVIKET-EGNIRRLDKILAGAVGTARSNGIKDID 288 (297)
T ss_pred HHhhCcc----chHHHHHHHHHhc-chhHhHHHHHHhhhhhhhhhccccccc
Confidence 5544222 5666677776666 899999999999888888777665343
No 358
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.13 E-value=0.053 Score=52.33 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=48.7
Q ss_pred cccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhh-hHHHHHHH
Q 012719 41 GFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKK-TEILMENF 119 (458)
Q Consensus 41 ~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~-~~~l~~~f 119 (458)
+++=-+++.+.+..+.+.+. .|+.|.||.|.+|+||+++++..|...+ ..++.+..+.-++ ... .+.++.++
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~---~~~Gh~LLvG~~GsGr~sl~rLaa~i~~--~~~~~i~~~~~y~--~~~f~~dLk~~~ 81 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLS---QPRGHALLVGVGGSGRQSLARLAAFICG--YEVFQIEITKGYS--IKDFKEDLKKAL 81 (268)
T ss_dssp -----HHHHHHHHHHHHHHC---STTEEEEEECTTTSCHHHHHHHHHHHTT--EEEE-TTTSTTTH--HHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHc---CCCCCeEEecCCCccHHHHHHHHHHHhc--cceEEEEeeCCcC--HHHHHHHHHHHH
Confidence 44445566655554444444 3446899999999999999998887777 4466665432111 111 12455555
Q ss_pred HHHHhccccCCceEEEccc
Q 012719 120 RRAIGLRIKENKEVYEGEV 138 (458)
Q Consensus 120 ~~a~~~~~~~~~ii~iDE~ 138 (458)
.+|-. ..+|.++++++.
T Consensus 82 ~~ag~--~~~~~vfll~d~ 98 (268)
T PF12780_consen 82 QKAGI--KGKPTVFLLTDS 98 (268)
T ss_dssp HHHHC--S-S-EEEEEECC
T ss_pred HHHhc--cCCCeEEEecCc
Confidence 55432 134677766653
No 359
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.12 E-value=0.00045 Score=60.42 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=21.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 012719 69 LLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++|.|+||+||||+|+.++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999999986
No 360
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.12 E-value=0.00092 Score=66.05 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=30.5
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
..++..++|.|+||||||++++.||..++ .||+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg--~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLG--VPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEeHH
Confidence 44457899999999999999999999998 6688543
No 361
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0015 Score=56.99 Aligned_cols=24 Identities=42% Similarity=0.796 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+.++|+||+||||++.-++..|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 578999999999999999999877
No 362
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.09 E-value=0.0011 Score=61.15 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=40.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCC--ccEEEecC-Ccccc---------hhhhhhH-HHHHHHHHHHhccccCCceEE
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSK--VPFCPMVG-SEVYS---------SEVKKTE-ILMENFRRAIGLRIKENKEVY 134 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~--~p~i~l~~-~~~~~---------~~~~~~~-~l~~~f~~a~~~~~~~~~ii~ 134 (458)
-+++.||+|+||||++++++..+... ...+.+.. .++.. ..++... .+.+.++.+.. ..|.+++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr---~~pd~ii 79 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALR---QDPDVIL 79 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhc---CCcCEEE
Confidence 47899999999999999999888532 11222211 12111 1112111 24444555443 4599999
Q ss_pred Eccc
Q 012719 135 EGEV 138 (458)
Q Consensus 135 iDE~ 138 (458)
+||+
T Consensus 80 ~gEi 83 (198)
T cd01131 80 VGEM 83 (198)
T ss_pred EcCC
Confidence 9997
No 363
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.08 E-value=0.00061 Score=61.30 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.+++|.||+|+|||++++.+|..++ .+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~--~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC--CcEEECCc
Confidence 5799999999999999999999998 66776653
No 364
>PRK06762 hypothetical protein; Provisional
Probab=97.08 E-value=0.00056 Score=60.94 Aligned_cols=25 Identities=32% Similarity=0.650 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.-++|.|+|||||||+|+.|++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999985
No 365
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.07 E-value=0.016 Score=51.12 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=25.4
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
..++-.++++||+|||||++.+++|.....
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 344568999999999999999999998753
No 366
>PHA02624 large T antigen; Provisional
Probab=97.06 E-value=0.0012 Score=69.34 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=30.8
Q ss_pred HHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 54 LVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 54 ~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.+++.+-.+.+..+.++|+||||||||+++.+|++.++
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444555656667899999999999999999999995
No 367
>PRK13946 shikimate kinase; Provisional
Probab=97.06 E-value=0.00056 Score=62.23 Aligned_cols=33 Identities=30% Similarity=0.551 Sum_probs=28.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
++.++|.|+||||||++++.||+.++ .||+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg--~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG--LPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCeECcC
Confidence 36899999999999999999999998 6677654
No 368
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.06 E-value=0.0015 Score=62.41 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCC-CccEEEecC
Q 012719 69 LLLAGPPGTGKTALALGICQELGS-KVPFCPMVG 101 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~ 101 (458)
++|.|+||+||||+|+.+++.+.. ...++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 689999999999999999998842 134555554
No 369
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.002 Score=59.46 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=43.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCC----c--cEEEecC-CcccchhhhhhH-----H--HH----HHHHHHHhccccC
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSK----V--PFCPMVG-SEVYSSEVKKTE-----I--LM----ENFRRAIGLRIKE 129 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~----~--p~i~l~~-~~~~~~~~~~~~-----~--l~----~~f~~a~~~~~~~ 129 (458)
+.|+.|||||||||+.|-+|..+... . ..+.++. +++.....|..+ . +. +.--..+..+...
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 79999999999999999999877332 1 2444443 333333222211 0 11 1111123445677
Q ss_pred CceEEEcccc
Q 012719 130 NKEVYEGEVT 139 (458)
Q Consensus 130 ~~ii~iDE~d 139 (458)
|-++++||+-
T Consensus 219 PEViIvDEIG 228 (308)
T COG3854 219 PEVIIVDEIG 228 (308)
T ss_pred CcEEEEeccc
Confidence 9999999984
No 370
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.05 E-value=0.00068 Score=60.73 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
.+++|.|+||||||++++.||..++ .|++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg--~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG--YRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEEEcc
Confidence 4688999999999999999999998 6677543
No 371
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.05 E-value=0.0064 Score=62.22 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=47.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQ 375 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 375 (458)
..+|+||||..+. -+.+|..+.+..+..++|.+++.. .....+.+.|..|...+.+.|+|-.|...
T Consensus 96 ~yifLDEIq~v~~-W~~~lk~l~d~~~~~v~itgsss~---------ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 96 SYIFLDEIQNVPD-WERALKYLYDRGNLDVLITGSSSS---------LLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ceEEEecccCchh-HHHHHHHHHccccceEEEECCchh---------hhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 6899999999876 455555555555546777666543 34455667788887777999999888865
No 372
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.04 E-value=0.0031 Score=63.50 Aligned_cols=23 Identities=52% Similarity=0.873 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 012719 68 ALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l 90 (458)
-+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57889999999999999999988
No 373
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.03 E-value=0.00053 Score=60.88 Aligned_cols=23 Identities=35% Similarity=0.743 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 012719 69 LLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+++.|||||||||+|+.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999999997
No 374
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.03 E-value=0.0019 Score=63.89 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=44.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CCccEEEecC-Ccccchh-------hhhhHHHHHHHHHHHhccccCCceEE
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG---SKVPFCPMVG-SEVYSSE-------VKKTEILMENFRRAIGLRIKENKEVY 134 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~---~~~p~i~l~~-~~~~~~~-------~~~~~~l~~~f~~a~~~~~~~~~ii~ 134 (458)
+.++++.|++|+||||++++|...+. ....++.+.. .++.... ....-.+.++++.+.. ..|..++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR---~~PD~Ii 220 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMR---LRPDRII 220 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhC---CCCCEEE
Confidence 35899999999999999999998872 2223343332 2222110 0011135556665554 5599999
Q ss_pred Ecccc
Q 012719 135 EGEVT 139 (458)
Q Consensus 135 iDE~d 139 (458)
++|+-
T Consensus 221 vGEiR 225 (323)
T PRK13833 221 VGEVR 225 (323)
T ss_pred EeecC
Confidence 99983
No 375
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.0016 Score=61.12 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=31.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCCcccc
Q 012719 67 RALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGSEVYS 106 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~~~~~ 106 (458)
.-+.+.|++||||||+|+.|+..++. ..+.+.++..++..
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 46778999999999999999999932 14567766666654
No 376
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.02 E-value=0.0005 Score=58.00 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 012719 69 LLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l 90 (458)
+++.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999997
No 377
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.02 E-value=0.0014 Score=67.25 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=57.3
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCce-EEEEcCCCChHHHHHHHHHHHhCCCcc-EEEecCC-cccchhhhhhH
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRA-LLLAGPPGTGKTALALGICQELGSKVP-FCPMVGS-EVYSSEVKKTE 113 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~-~Ll~GppGtGKT~lA~alA~~l~~~~p-~i~l~~~-~~~~~~~~~~~ 113 (458)
.+|+++.........+..++ +. +++ +|++||.|+||||+..++-+.++.... ++.+..+ ++.-..+...+
T Consensus 235 l~l~~Lg~~~~~~~~~~~~~---~~----p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~q 307 (500)
T COG2804 235 LDLEKLGMSPFQLARLLRLL---NR----PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQ 307 (500)
T ss_pred CCHHHhCCCHHHHHHHHHHH---hC----CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceee
Confidence 45666666666655444333 22 245 678999999999999999999965422 4444332 33333333322
Q ss_pred ---HHHHHHHHHH-hccccCCceEEEccccc
Q 012719 114 ---ILMENFRRAI-GLRIKENKEVYEGEVTE 140 (458)
Q Consensus 114 ---~l~~~f~~a~-~~~~~~~~ii~iDE~d~ 140 (458)
.+...|..+. .+-...|.+|+++|+-+
T Consensus 308 VN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 308 VNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred cccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 1223333332 22236799999999854
No 378
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.00 E-value=0.00067 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 012719 69 LLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999997
No 379
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.00 E-value=0.013 Score=62.27 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=28.3
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
+.-...++..+.+.||+|+||||+++.++....+.
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33445567789999999999999999999877543
No 380
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.00 E-value=0.0021 Score=61.25 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+..+++.||+|+|||++++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 458999999999999999999998854
No 381
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.006 Score=64.52 Aligned_cols=131 Identities=24% Similarity=0.284 Sum_probs=96.2
Q ss_pred ceEEEEcccchhc--------------HHHHHHHHHHhhccC--CC-eEEEecCCccccccCCCCCCCCCCChhHh--hh
Q 012719 299 PGVLFIDEVHMLD--------------MECFSYLNRALESSL--SP-IVIFATNRGICNIRGTDMNSPHGIPLDLL--DR 359 (458)
Q Consensus 299 ~~Vl~IDE~~~l~--------------~~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~--sR 359 (458)
++|+||||++... ....|-||..|+... .. +++.+| +.|.-+.|+|+ .|
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaT------------NRpdVlD~ALlRpgR 310 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAAT------------NRPDVLDPALLRPGR 310 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecC------------CCcccchHhhcCCCC
Confidence 4899999999984 236777777787765 34 555556 55666777777 25
Q ss_pred hc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 360 LV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 360 ~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
+. .+.++.++-....+|++-++++..+.-+-+ +..|++.....+-....+++.-|..+|...++..|+..++.++.+-
T Consensus 311 FDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd-l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~dr 389 (596)
T COG0465 311 FDRQILVELPDIKGREQILKVHAKNKPLAEDVD-LKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDR 389 (596)
T ss_pred cceeeecCCcchhhHHHHHHHHhhcCCCCCcCC-HHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHH
Confidence 53 347888888999999998888777662222 2336666634466788889999999999999999999999999885
Q ss_pred hhch
Q 012719 439 YLDA 442 (458)
Q Consensus 439 ~~~~ 442 (458)
.+.-
T Consensus 390 v~~G 393 (596)
T COG0465 390 VIAG 393 (596)
T ss_pred HhcC
Confidence 5443
No 382
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.98 E-value=0.0069 Score=71.02 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=55.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-------------C-eEEEecCCccccccCCCCCCCCCCChhHhhhhccccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-------------P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-------------~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~ 365 (458)
...++||++..+-+.+++|++++++.+. + .++++|...+- -+..-..+.-.|++|+..++|
T Consensus 509 ~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~-----~y~grk~lsRa~~~rf~e~~f 583 (1856)
T KOG1808|consen 509 DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG-----TYGGRKILSRALRNRFIELHF 583 (1856)
T ss_pred CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc-----ccchhhhhhhcccccchhhhh
Confidence 6789999999999999999999998321 2 34445521100 012222345578888899999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 012719 366 QIYGPAEMIQILAIRAQ 382 (458)
Q Consensus 366 ~~~~~~e~~~il~~~~~ 382 (458)
....++++..|+..++.
T Consensus 584 ~~~~e~e~~~i~~~~~~ 600 (1856)
T KOG1808|consen 584 DDIGEEELEEILEHRCG 600 (1856)
T ss_pred hhcCchhhhhhhccccc
Confidence 99999999999887753
No 383
>PHA02774 E1; Provisional
Probab=96.96 E-value=0.0023 Score=67.14 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=26.9
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.+.+..++++|+||||||||++|.+|++.++.
T Consensus 429 ~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G 460 (613)
T PHA02774 429 KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG 460 (613)
T ss_pred hcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444468999999999999999999999963
No 384
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.96 E-value=0.002 Score=64.38 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=46.1
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC-cccchh------------hhhhH-HHHHHHHHHHhccccC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS-EVYSSE------------VKKTE-ILMENFRRAIGLRIKE 129 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~-~~~~~~------------~~~~~-~l~~~f~~a~~~~~~~ 129 (458)
..+.++++.||+||||||++++|+..++.....+.+... ++.-.. .+... ...++++.+.. ..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR---~~ 236 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLR---MR 236 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhc---CC
Confidence 344699999999999999999999988654444443322 111100 01111 24455555554 45
Q ss_pred CceEEEcccc
Q 012719 130 NKEVYEGEVT 139 (458)
Q Consensus 130 ~~ii~iDE~d 139 (458)
|..|+++|+-
T Consensus 237 pD~IivGEiR 246 (344)
T PRK13851 237 PDRILLGEMR 246 (344)
T ss_pred CCeEEEEeeC
Confidence 9999999874
No 385
>PF13245 AAA_19: Part of AAA domain
Probab=96.96 E-value=0.00086 Score=51.62 Aligned_cols=23 Identities=52% Similarity=0.863 Sum_probs=16.7
Q ss_pred eEEEEcCCCChHHH-HHHHHHHHh
Q 012719 68 ALLLAGPPGTGKTA-LALGICQEL 90 (458)
Q Consensus 68 ~~Ll~GppGtGKT~-lA~alA~~l 90 (458)
-+++.||||||||+ ++..++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 56679999999994 555555544
No 386
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=96.94 E-value=0.0082 Score=59.85 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=89.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCC-CCChhHhhh--hcccccCCCCHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPH-GIPLDLLDR--LVIIRTQIYGPAEMIQ 375 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~-~l~~~l~sR--~~~i~~~~~~~~e~~~ 375 (458)
.++++.+...+.....+.|...++.++.. ++|++.+. .... .+..-+... ...+.+.++++.++.+
T Consensus 73 rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~----------~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~ 142 (328)
T PRK08487 73 NLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGA----------DSKTKDIEKLFQKKDEAVFVRFFKPNAREALE 142 (328)
T ss_pred eEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCC----------cchhHHHHHHhccCCCceEEEeeCCCHHHHHH
Confidence 78888877766666678888888887755 44433311 1110 111111111 2245788899999999
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 376 ILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 376 il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+..++++.|+.++++++.+++... .+|+..+.+-|+....+. + .||.++|...+.
T Consensus 143 ~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~ELeKL~ly~---~--~It~edV~~~v~ 198 (328)
T PRK08487 143 LLQERAKELGLDIDQNALNHLYFIH-NEDLALAANELEKLAILN---E--PITLKDIQELVF 198 (328)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHHhc---C--CCCHHHHHHHhc
Confidence 9999999999999999999999999 889999888888777763 2 699999999865
No 387
>PRK13764 ATPase; Provisional
Probab=96.94 E-value=0.0015 Score=69.60 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
..++|++|||||||||++++++.++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999998854
No 388
>PRK13808 adenylate kinase; Provisional
Probab=96.93 E-value=0.0011 Score=65.52 Aligned_cols=38 Identities=32% Similarity=0.613 Sum_probs=31.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhh
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~ 109 (458)
.++|+||||+|||++++.||+.++ +.+++..+++..++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg----l~~is~gdlLR~~i 39 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG----IVQLSTGDMLRAAV 39 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CceecccHHHHHHh
Confidence 589999999999999999999987 56677666665543
No 389
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.92 E-value=0.0022 Score=63.42 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=44.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecC-Ccccc---hh----hhhhHHHHHHHHHHHhccccCCceEE
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVG-SEVYS---SE----VKKTEILMENFRRAIGLRIKENKEVY 134 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~-~~~~~---~~----~~~~~~l~~~f~~a~~~~~~~~~ii~ 134 (458)
+.++++.|++|+|||+++++++..+ .....++.+.. .++.. .+ .+..-.+.++++.+.. ..|..|+
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR---~~PD~Ii 224 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLR---MRPDRIL 224 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhc---CCCCEEE
Confidence 4689999999999999999999874 22222332222 12211 00 0111135666776664 4599999
Q ss_pred Ecccc
Q 012719 135 EGEVT 139 (458)
Q Consensus 135 iDE~d 139 (458)
++|+-
T Consensus 225 vGEiR 229 (319)
T PRK13894 225 VGEVR 229 (319)
T ss_pred EeccC
Confidence 99984
No 390
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.92 E-value=0.005 Score=56.77 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=18.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALES 324 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~ 324 (458)
.+++|||++.++++....++..+.+
T Consensus 121 ~~iIvDEaQN~t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 121 AFIIVDEAQNLTPEELKMILTRIGE 145 (205)
T ss_dssp EEEEE-SGGG--HHHHHHHHTTB-T
T ss_pred eEEEEecccCCCHHHHHHHHcccCC
Confidence 8999999999999888888877654
No 391
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.90 E-value=0.0024 Score=59.95 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=31.0
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGS 102 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~ 102 (458)
..|...+.-++++||||+|||++|..+|... ....+.+.++..
T Consensus 17 ~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 17 GGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4566667788999999999999999999755 111345555544
No 392
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.061 Score=53.89 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=61.8
Q ss_pred ceEEEEcccchhc--------------H---HHHHHHHHHhhccCC-CeEEEecCC----ccccccCCCCCCCCC-CCh-
Q 012719 299 PGVLFIDEVHMLD--------------M---ECFSYLNRALESSLS-PIVIFATNR----GICNIRGTDMNSPHG-IPL- 354 (458)
Q Consensus 299 ~~Vl~IDE~~~l~--------------~---~~~~~Ll~~lE~~~~-~i~il~tn~----~~~~~~~~~~~~~~~-l~~- 354 (458)
+-++.||.++.+- | .....+.+.++...- ..+|++... ....-.+.+.-.|.. +.+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 3455699998873 2 244556666664432 355655541 111111111122222 223
Q ss_pred --hHhhhhcccccCCCCHHHHHHHHHHHHHhcCC--c-cCHHHHHHHHHHhhcCCHHH
Q 012719 355 --DLLDRLVIIRTQIYGPAEMIQILAIRAQVEEI--V-LDEESLAHLGEIARDTSLRH 407 (458)
Q Consensus 355 --~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--~-i~~~~l~~i~~~~~~g~~r~ 407 (458)
+.+.-+..+.+++|+.+|...++..-.+..=+ . -+++-.+.+.-++ +|+++.
T Consensus 396 gfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l 452 (461)
T KOG3928|consen 396 GFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSL 452 (461)
T ss_pred chhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHH
Confidence 34455566799999999999888765443211 1 2377788888899 999954
No 393
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.89 E-value=0.038 Score=57.52 Aligned_cols=135 Identities=23% Similarity=0.253 Sum_probs=86.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-------------Ce-EEEecCCccccccCC------CCCCCCCCChhHhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-------------PI-VIFATNRGICNIRGT------DMNSPHGIPLDLLDR 359 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-------------~i-~il~tn~~~~~~~~~------~~~~~~~l~~~l~sR 359 (458)
||+-|||++.|+.--.-++-.+||.... .+ ++.++|+ ++|. ++.+. +||+.|+||
T Consensus 400 GVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANP----vyG~Yd~~k~P~eNI-gLpDSLLSR 474 (818)
T KOG0479|consen 400 GVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP----VYGQYDQSKTPMENI-GLPDSLLSR 474 (818)
T ss_pred ceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCc----cccccCCCCChhhcc-CCcHHHHhh
Confidence 9999999999998888899999996422 22 3444444 2222 22222 678899999
Q ss_pred hccc--ccCCCCHH---HH-HHHHHHH-----------------------------------------------------
Q 012719 360 LVII--RTQIYGPA---EM-IQILAIR----------------------------------------------------- 380 (458)
Q Consensus 360 ~~~i--~~~~~~~~---e~-~~il~~~----------------------------------------------------- 380 (458)
|..+ .+...+.+ .+ .++|+.+
T Consensus 475 FDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k 554 (818)
T KOG0479|consen 475 FDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEK 554 (818)
T ss_pred hcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccc
Confidence 9644 33333321 11 1122211
Q ss_pred -------------HHh-cCCccCHHHHHHHHHHhhc----C-----------CHHHHHHhhHHHHHHHhhhCCCCccHHH
Q 012719 381 -------------AQV-EEIVLDEESLAHLGEIARD----T-----------SLRHAVQLLYPASVVAKMNGRDSICKAD 431 (458)
Q Consensus 381 -------------~~~-~~~~i~~~~l~~i~~~~~~----g-----------~~r~a~~ll~~a~~~a~~~~~~~it~~~ 431 (458)
|+. ..-.+++++.++|++.-.. . .+|.+..+++.+-++|..+=+..++.+|
T Consensus 555 ~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~D 634 (818)
T KOG0479|consen 555 LLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDD 634 (818)
T ss_pred eeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhh
Confidence 111 1234788888988864101 1 2688888899888999888788899999
Q ss_pred HHHHHHhh
Q 012719 432 VEEVKALY 439 (458)
Q Consensus 432 v~~~~~~~ 439 (458)
.+.|++|.
T Consensus 635 Ae~A~~Ll 642 (818)
T KOG0479|consen 635 AEAAVNLL 642 (818)
T ss_pred HHHHHHHH
Confidence 99998753
No 394
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.00087 Score=59.23 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
.++++|.|||||||+|..|+ .++ ...++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg--~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG--YKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC--CceeeHH
Confidence 57899999999999999999 888 4455543
No 395
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.87 E-value=0.0021 Score=63.17 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=43.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC---CccEEEecCC-ccc-------chhhhhhH-HHHHHHHHHHhccccCCceE
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS---KVPFCPMVGS-EVY-------SSEVKKTE-ILMENFRRAIGLRIKENKEV 133 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~---~~p~i~l~~~-~~~-------~~~~~~~~-~l~~~f~~a~~~~~~~~~ii 133 (458)
+.++++.||+|+||||+++++...+.. ....+.+... ++. .-...... .+.++++.+.. ..|..+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR---~~pD~i 208 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLR---LRPDRI 208 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhc---CCCCEE
Confidence 358999999999999999999998732 1223333221 111 11111111 35556665554 459999
Q ss_pred EEcccc
Q 012719 134 YEGEVT 139 (458)
Q Consensus 134 ~iDE~d 139 (458)
+++|+-
T Consensus 209 ivGEiR 214 (299)
T TIGR02782 209 IVGEVR 214 (299)
T ss_pred EEeccC
Confidence 999984
No 396
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.00076 Score=61.17 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=23.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
=++|+|+||+|||++|+.||+.|..+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 47899999999999999999999544
No 397
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.85 E-value=0.0033 Score=59.45 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=25.8
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHH
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..|.+.+..++++||||||||+++..++..
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 457677788999999999999999999764
No 398
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.84 E-value=0.0023 Score=64.13 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=43.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC--ccEEEecCC-ccc---------chhhhhhH-HHHHHHHHHHhccccCCceE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSK--VPFCPMVGS-EVY---------SSEVKKTE-ILMENFRRAIGLRIKENKEV 133 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~--~p~i~l~~~-~~~---------~~~~~~~~-~l~~~f~~a~~~~~~~~~ii 133 (458)
..+++.||+|+||||+.+++...++.. ..++.+..+ ++. ..+++... ...+.++.+.. ..|.++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr---~~pd~i 199 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALR---EDPDVI 199 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhc---cCCCEE
Confidence 478999999999999999999887532 223333221 211 11223211 24444555443 569999
Q ss_pred EEcccc
Q 012719 134 YEGEVT 139 (458)
Q Consensus 134 ~iDE~d 139 (458)
++||+-
T Consensus 200 ~vgEir 205 (343)
T TIGR01420 200 LIGEMR 205 (343)
T ss_pred EEeCCC
Confidence 999983
No 399
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.018 Score=53.93 Aligned_cols=141 Identities=21% Similarity=0.227 Sum_probs=93.4
Q ss_pred HHHHHHHhhccc----------cccceEEEEcccchhc-----------HHHHHHHHHHhh---ccCC--C-eEEEecCC
Q 012719 284 KVVNRFIDEGAA----------ELVPGVLFIDEVHMLD-----------MECFSYLNRALE---SSLS--P-IVIFATNR 336 (458)
Q Consensus 284 ~~~~~~~~~~~~----------~~~~~Vl~IDE~~~l~-----------~~~~~~Ll~~lE---~~~~--~-i~il~tn~ 336 (458)
+.+.+|+.||.. +-.+.|+||||++.+. .+.|..|+.++. .... . -+|++||+
T Consensus 224 efvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnr 303 (408)
T KOG0727|consen 224 EFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNR 303 (408)
T ss_pred HHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCc
Confidence 456667666653 4457899999999874 456776666654 3322 2 48889965
Q ss_pred ccccccCCCCCCCCCCChhHhh--hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 337 GICNIRGTDMNSPHGIPLDLLD--RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
. ..|.|+|+. |+. .+.|+.++.-+-+-++.-++.+.++.=+-+.-++++.-- .-+......+++
T Consensus 304 a------------dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpd-kis~adi~aicq 370 (408)
T KOG0727|consen 304 A------------DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPD-KISGADINAICQ 370 (408)
T ss_pred c------------cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCcc-ccchhhHHHHHH
Confidence 4 567777662 443 347887777777767776666655543334444444322 334556667888
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHH
Q 012719 414 PASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 414 ~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
-|..+|....+-.|...+++.+..
T Consensus 371 eagm~avr~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 371 EAGMLAVRENRYVVLQKDFEKAYK 394 (408)
T ss_pred HHhHHHHHhcceeeeHHHHHHHHH
Confidence 899999888888899999998766
No 400
>PRK04040 adenylate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=59.99 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFC 97 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i 97 (458)
..++++|+|||||||+++.+++.++..++++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5789999999999999999999994224443
No 401
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.82 E-value=0.029 Score=56.48 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=23.1
Q ss_pred eEEE--EcccchhcHHHHHHHHHHhhccCCCeEEEecC
Q 012719 300 GVLF--IDEVHMLDMECFSYLNRALESSLSPIVIFATN 335 (458)
Q Consensus 300 ~Vl~--IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn 335 (458)
+++| +||...+.. +..+|.+...|+..++.+
T Consensus 342 ~~I~TKlDET~s~G~-----~~s~~~e~~~PV~YvT~G 374 (407)
T COG1419 342 GLIFTKLDETTSLGN-----LFSLMYETRLPVSYVTNG 374 (407)
T ss_pred eeEEEcccccCchhH-----HHHHHHHhCCCeEEEeCC
Confidence 6666 899988765 677778888887666653
No 402
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=96.79 E-value=0.0077 Score=61.10 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=51.5
Q ss_pred HHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhc----cCC--CeEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 287 NRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALES----SLS--PIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 287 ~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~----~~~--~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
....+.|+.+...-|+|+||+|.|=.++-.+|+.-+|. -++ -=++++| ..|.++|.++++-|
T Consensus 244 e~LPEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvT------------Q~P~DiP~~VL~QL 311 (502)
T PF05872_consen 244 EQLPEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVT------------QNPTDIPDDVLGQL 311 (502)
T ss_pred HhCccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEe------------CCCCCCCHHHHHhh
Confidence 34455677777788999999999955555555555553 122 2245567 67889999999888
Q ss_pred c-cc--ccCCCCHHHHHH
Q 012719 361 V-II--RTQIYGPAEMIQ 375 (458)
Q Consensus 361 ~-~i--~~~~~~~~e~~~ 375 (458)
. .+ .+..+|+.|...
T Consensus 312 GnrIQHaLRAfTP~DqKa 329 (502)
T PF05872_consen 312 GNRIQHALRAFTPKDQKA 329 (502)
T ss_pred hhHHHHHHhcCCHhHHHH
Confidence 4 33 567777666544
No 403
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.79 E-value=0.0032 Score=62.14 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=46.6
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC-cccch---h---------hhhhH-HHHHHHHHHHhccc
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS-EVYSS---E---------VKKTE-ILMENFRRAIGLRI 127 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~-~~~~~---~---------~~~~~-~l~~~f~~a~~~~~ 127 (458)
....+.++++.||+|+||||++++++..+......+.+... ++... . .+... .+.++++.+..
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr--- 216 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLR--- 216 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhc---
Confidence 33345699999999999999999999887543333333221 11100 0 01111 25556665554
Q ss_pred cCCceEEEccccc
Q 012719 128 KENKEVYEGEVTE 140 (458)
Q Consensus 128 ~~~~ii~iDE~d~ 140 (458)
..|.++++||+-.
T Consensus 217 ~~pd~ii~gE~r~ 229 (308)
T TIGR02788 217 MRPDRIILGELRG 229 (308)
T ss_pred CCCCeEEEeccCC
Confidence 4599999999853
No 404
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.77 E-value=0.0079 Score=56.09 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=31.2
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVG 101 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~ 101 (458)
..|..++.-++++|+||||||++|..+|..+. ...+.+.++.
T Consensus 13 ~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 13 GGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred cCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45666677799999999999999999998762 2234555544
No 405
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.76 E-value=0.013 Score=66.03 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=25.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEE
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVI 331 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~i 331 (458)
.||+|||+.+++......|++..+.....+++
T Consensus 435 ~vlIVDEASMv~~~~m~~LL~~a~~~garvVL 466 (988)
T PRK13889 435 DVLVIDEAGMVGTRQLERVLSHAADAGAKVVL 466 (988)
T ss_pred cEEEEECcccCCHHHHHHHHHhhhhCCCEEEE
Confidence 69999999999999999999877765444333
No 406
>PRK05907 hypothetical protein; Provisional
Probab=96.75 E-value=0.02 Score=56.54 Aligned_cols=125 Identities=12% Similarity=0.057 Sum_probs=92.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEE-EecCCccccccCCCCCCCCCCChhHhhhhccc----ccCCCCHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVI-FATNRGICNIRGTDMNSPHGIPLDLLDRLVII----RTQIYGPAEM 373 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~i-l~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i----~~~~~~~~e~ 373 (458)
.++++.+.+.++....+.|...+++|+.. ++| ++.+ . .....+...+- ....+ .++++.+.++
T Consensus 71 RlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~-~---------d~~kkl~K~i~-k~~~v~~~~e~~~l~e~~L 139 (311)
T PRK05907 71 ETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK-Q---------ECFSSLSKKLS-SALCLSLFGEWFADRDKRI 139 (311)
T ss_pred EEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec-c---------cHHHHHHHHHh-hcceeccccccCCCCHHHH
Confidence 67777777777766778999999999886 544 3331 0 00001111121 24444 7889999999
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 374 IQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 374 ~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+.+..++++.|..+++++++++++....+++..+.+-++....++ .++..||.++|+..+.
T Consensus 140 ~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~--g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 140 AQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQM--GKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhc--CCCCeECHHHHHHHhc
Confidence 9999999999999999999999999882379999998898777665 2456799999998866
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.75 E-value=0.0046 Score=57.00 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+-++++||+|+||||+.+.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999985
No 408
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.73 E-value=0.013 Score=61.21 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=27.5
Q ss_pred ceEEEEcccc-hhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 299 PGVLFIDEVH-MLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 299 ~~Vl~IDE~~-~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
.-+++|||+- .|.++++-.+++. +=+|++. +|-.|||.+.|+=
T Consensus 359 fD~vIIDEaaQamE~~cWipvlk~------kk~ILaG-------------Dp~QLpP~v~S~~ 402 (649)
T KOG1803|consen 359 FDLVIIDEAAQAMEPQCWIPVLKG------KKFILAG-------------DPKQLPPTVLSDK 402 (649)
T ss_pred CCEEEEehhhhhccchhhhHHhcC------CceEEeC-------------CcccCCcccccch
Confidence 5699999974 5667777777763 2245454 5567777666543
No 409
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.71 E-value=0.15 Score=57.39 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=73.7
Q ss_pred ccceEEEEcccchhcHHHHHHHHHHhhccC--C----CeEEEecCCccccccCCCCCCCCCCChhHhhhh--cccccCCC
Q 012719 297 LVPGVLFIDEVHMLDMECFSYLNRALESSL--S----PIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL--VIIRTQIY 368 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~--~----~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~--~~i~~~~~ 368 (458)
.++-|+|+|++|-.++...+.|-.+|.... . ++..+.+ ....+.+..+++- ..+.+.|+
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~-------------~~~~~~~~~~~~~~i~~I~L~PL 219 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHP-------------LRPTLGEILKSATNITTITLAPL 219 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCC-------------ccchhhHHhhcCCceeEEecCcC
Confidence 345899999999999999999999998875 1 1111111 1112222333333 45699999
Q ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHH
Q 012719 369 GPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASV 417 (458)
Q Consensus 369 ~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~ 417 (458)
+..+....+...+... ...+.+..+.+.+.+ +|+|-++.+.+.....
T Consensus 220 ~~~d~~~lV~~~l~~~-~~~~~p~~~~i~~kt-~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 220 SRADTNQLVAATLGCT-KLLPAPLLELIFEKT-KGNPFFIEEFLKALYE 266 (849)
T ss_pred chhhHHHHHHHHhCCc-ccccchHHHHHHHHh-cCCCccHHHHHHHHHh
Confidence 9999999998775442 346667888999998 8898887777775543
No 410
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=96.70 E-value=0.0023 Score=57.17 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=70.4
Q ss_pred eEEEEccc----chhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHH
Q 012719 300 GVLFIDEV----HMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMI 374 (458)
Q Consensus 300 ~Vl~IDE~----~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~ 374 (458)
.|++|.++ +....+....|...++.++.. ++|+.++... .....+...+...+.++.+.+++..++.
T Consensus 59 klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~--------~~~~k~~k~l~~~~~~~~~~~~~~~~~~ 130 (172)
T PF06144_consen 59 KLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKL--------DKRKKLYKALKKQAIVIECKKPKEQELP 130 (172)
T ss_dssp EEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S----------HHHHHHHHHTTTEEEEEE----TTTHH
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCch--------hhhhhHHHHHhcccceEEecCCCHHHHH
Confidence 79999998 556778899999999998877 5555552000 0011122344455567799999999999
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHH
Q 012719 375 QILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPA 415 (458)
Q Consensus 375 ~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a 415 (458)
.+++..+++.|+.++++++..+++.. +++++.+.+-++..
T Consensus 131 ~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~EleKL 170 (172)
T PF06144_consen 131 RWIKERAKKNGLKIDPDAAQYLIERV-GNDLSLLQNELEKL 170 (172)
T ss_dssp HHHHHHHHHTT-EE-HHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHh-ChHHHHHHHHHHHh
Confidence 99999999999999999999999999 88998877776643
No 411
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.70 E-value=0.0015 Score=58.02 Aligned_cols=26 Identities=35% Similarity=0.692 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEE
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFC 97 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i 97 (458)
+.|+|+||||||||++.|+.. + ++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g--~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-G--YPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T---EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-C--CeEE
Confidence 789999999999999999998 5 5555
No 412
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.68 E-value=0.0017 Score=58.52 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..++|.|+||+||||+|+.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999885
No 413
>PF13479 AAA_24: AAA domain
Probab=96.68 E-value=0.0034 Score=58.53 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=40.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch--------hhhhhHHHHHHHHHHHhccccCCceEEEccc
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS--------EVKKTEILMENFRRAIGLRIKENKEVYEGEV 138 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~--------~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~ 138 (458)
..+++|||||+|||++|..+.+ .-|+.+.+...... .+..-+.+.+.+...... ......|+||-+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k-----~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~-~~~y~tiVIDsi 77 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPK-----PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED-EADYDTIVIDSI 77 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCC-----eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc-cCCCCEEEEECH
Confidence 5799999999999999988822 23555554421111 111112344444443222 345789999977
Q ss_pred ccc
Q 012719 139 TEL 141 (458)
Q Consensus 139 d~l 141 (458)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 654
No 414
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.68 E-value=0.0056 Score=61.88 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=53.3
Q ss_pred HHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC-ccEEEecCCcccchhhhhh---------------HHHHHHHHH
Q 012719 58 MIRQKKMAGRALLLAGPPGTGKTALALGICQELGSK-VPFCPMVGSEVYSSEVKKT---------------EILMENFRR 121 (458)
Q Consensus 58 ~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~-~p~i~l~~~~~~~~~~~~~---------------~~l~~~f~~ 121 (458)
.+..|..++.-++++|+||+|||+++..+|..+... .+.+.++..+......... ..+..+++.
T Consensus 74 vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~ 153 (372)
T cd01121 74 VLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS 153 (372)
T ss_pred hhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH
Confidence 335567777789999999999999999998766321 3466666544322111100 012333333
Q ss_pred HHhccccCCceEEEccccccCccc
Q 012719 122 AIGLRIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 122 a~~~~~~~~~ii~iDE~d~l~~~~ 145 (458)
.. ...|.++++|++..+....
T Consensus 154 i~---~~~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 154 IE---ELKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred HH---hcCCcEEEEcchHHhhccc
Confidence 32 2469999999999886543
No 415
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.67 E-value=0.0025 Score=68.41 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.1
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhc
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALES 324 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~ 324 (458)
..|++|||+.+++-.....|++++..
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~ 291 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPP 291 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhccc
Confidence 37999999999999999999998753
No 416
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.67 E-value=0.0043 Score=52.37 Aligned_cols=56 Identities=39% Similarity=0.430 Sum_probs=44.7
Q ss_pred ceEEEEcccchhcHHH-----------HHHHHHHhhccCC---C-eEEEecCCccccccCCCCCCCCCCChhHh-hhhcc
Q 012719 299 PGVLFIDEVHMLDMEC-----------FSYLNRALESSLS---P-IVIFATNRGICNIRGTDMNSPHGIPLDLL-DRLVI 362 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~-----------~~~Ll~~lE~~~~---~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~-sR~~~ 362 (458)
+.|+||||+|.+.+.. ++.|+..++.... + ++|++| +.+..++++++ +||..
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~tt------------n~~~~i~~~l~~~rf~~ 126 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATT------------NSPDKIDPALLRSRFDR 126 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEE------------SSGGGSCHHHHSTTSEE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEee------------CChhhCCHhHHhCCCcE
Confidence 5999999999997765 8999999998765 3 566666 66889999999 99965
Q ss_pred c-ccC
Q 012719 363 I-RTQ 366 (458)
Q Consensus 363 i-~~~ 366 (458)
. .++
T Consensus 127 ~i~~~ 131 (132)
T PF00004_consen 127 RIEFP 131 (132)
T ss_dssp EEEE-
T ss_pred EEEcC
Confidence 4 543
No 417
>PRK08233 hypothetical protein; Provisional
Probab=96.66 E-value=0.0014 Score=59.11 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.-+.+.|+||+||||+|..|+..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999985
No 418
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.64 E-value=0.0047 Score=64.15 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchhhhhhH---------------HHHHHHH
Q 012719 57 DMIRQKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSEVKKTE---------------ILMENFR 120 (458)
Q Consensus 57 ~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~~~~~~---------------~l~~~f~ 120 (458)
+.+..|..++.-++++|+||+|||+++..++..+. ...+.+.++..+.........+ .+.++++
T Consensus 71 ~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~ 150 (446)
T PRK11823 71 RVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILA 150 (446)
T ss_pred HHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHH
Confidence 34456777777899999999999999999988662 1245666666543332111111 1223333
Q ss_pred HHHhccccCCceEEEccccccCccc
Q 012719 121 RAIGLRIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 121 ~a~~~~~~~~~ii~iDE~d~l~~~~ 145 (458)
... ...|.++++|++..+....
T Consensus 151 ~i~---~~~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 151 TIE---EEKPDLVVIDSIQTMYSPE 172 (446)
T ss_pred HHH---hhCCCEEEEechhhhcccc
Confidence 322 2458999999999887543
No 419
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.64 E-value=0.0024 Score=58.47 Aligned_cols=35 Identities=40% Similarity=0.697 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
-++++||+|||||.+|-++|+.++ .|++.++.-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g--~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTG--APVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhC--CCEEEecceec
Confidence 478999999999999999999998 66777666443
No 420
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.64 E-value=0.0039 Score=62.68 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=46.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC---Ccc-EEEecCCc---------------ccchhhhhhH-H---HHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS---KVP-FCPMVGSE---------------VYSSEVKKTE-I---LMENFRRA 122 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~---~~p-~i~l~~~~---------------~~~~~~~~~~-~---l~~~f~~a 122 (458)
+...+++||||+|||+|++.+++.+.. ++. ++-+.+.. +.+......+ . ...++..|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999987743 222 33333332 2222222222 1 22444444
Q ss_pred Hhcc-ccCCceEEEccccccCc
Q 012719 123 IGLR-IKENKEVYEGEVTELSP 143 (458)
Q Consensus 123 ~~~~-~~~~~ii~iDE~d~l~~ 143 (458)
.... .-...++|+||+..+..
T Consensus 249 e~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHH
Confidence 4332 23578999999987753
No 421
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.63 E-value=0.031 Score=60.37 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=26.4
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.-...++..+.+.||+|+||||+++.++..+
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344567789999999999999999999877
No 422
>PRK01184 hypothetical protein; Provisional
Probab=96.63 E-value=0.0019 Score=58.65 Aligned_cols=28 Identities=32% Similarity=0.680 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
-++++||||+||||+++ +++.++ ++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g--~~~i~ 30 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMG--IPVVV 30 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcC--CcEEE
Confidence 57899999999999998 788887 44544
No 423
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.039 Score=51.65 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
+.-...++-.+=+.|++||||||++++++.......--+.+.+.
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 33344555678899999999999999999887544334444443
No 424
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.61 E-value=0.043 Score=62.56 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=62.2
Q ss_pred ccceEEEEcccchhc----HHHHHHHHHHhhccCCC--eEEEecCCccccccCCCCCCCCCCChhHhhhhc-ccccCCCC
Q 012719 297 LVPGVLFIDEVHMLD----MECFSYLNRALESSLSP--IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV-IIRTQIYG 369 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~----~~~~~~Ll~~lE~~~~~--i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~ 369 (458)
+.+-|++|||+..|- +++.+.|.++....+.- .+|++|++. ...-|+..+++-|. ++.|.--+
T Consensus 1139 LP~IVVIIDE~AdLm~~~~kevE~lI~rLAqkGRAaGIHLILATQRP----------svDVItg~IKAN~ptRIAfrVsS 1208 (1355)
T PRK10263 1139 EPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRP----------SVDVITGLIKANIPTRIAFTVSS 1208 (1355)
T ss_pred CCeEEEEEcChHHHHhhhhHHHHHHHHHHHHHhhhcCeEEEEEecCc----------ccccchHHHHhhccceEEEEcCC
Confidence 445799999997763 45666677777766554 688888542 22245555777673 55666666
Q ss_pred HHHHHHHHHHH-HH--------------------hcCCccCHHHHHHHHHHh-hcCCHHHH
Q 012719 370 PAEMIQILAIR-AQ--------------------VEEIVLDEESLAHLGEIA-RDTSLRHA 408 (458)
Q Consensus 370 ~~e~~~il~~~-~~--------------------~~~~~i~~~~l~~i~~~~-~~g~~r~a 408 (458)
..+-+.||-.. ++ -.+.-++++.+..+++.. .++.+.+.
T Consensus 1209 ~~DSrtILd~~GAE~LlG~GDmL~~~~g~~~p~RvqgafvsD~Ei~~vv~~~k~~~~p~y~ 1269 (1355)
T PRK10263 1209 KIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYV 1269 (1355)
T ss_pred HHHHHHhcCCcchhhccCCccEEEecCCCCceeEEEeccCCHHHHHHHHHHHHhcCCCchh
Confidence 77776676432 11 111236888888888753 24545443
No 425
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.024 Score=60.55 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=30.9
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
-...|+..+-+.||+|+||||+|..|-+...+.---|.+++
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 34566789999999999999999999998865432333333
No 426
>PRK04132 replication factor C small subunit; Provisional
Probab=96.60 E-value=0.0011 Score=73.10 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=38.1
Q ss_pred CCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHH
Q 012719 28 GLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTAL 82 (458)
Q Consensus 28 ~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~l 82 (458)
++.+...|. +|+|++||+++++.++ +++..+..+ |++|+||||+||+..
T Consensus 8 ~~~~k~RP~-~f~dIiGqe~i~~~Lk---~~i~~~~i~--h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 8 PWVEKYRPQ-RLDDIVGQEHIVKRLK---HYVKTGSMP--HLLFAGPPGVGKCLT 56 (846)
T ss_pred cHHHhhCCC-CHHHhcCcHHHHHHHH---HHHHcCCCC--eEEEECCCCCCcccc
Confidence 455566675 5999999999999666 555667665 688999999999643
No 427
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=96.60 E-value=0.018 Score=59.52 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=48.5
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHHhcccC-CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 31 ANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMA-GRALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 31 ~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~-~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
+.+.+-..|+++-|.++....+.........+..+ .+.+++.||.|.||++++..+-+.+.. .|+...+
T Consensus 67 ~~i~~y~~f~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~-~pi~~~~ 136 (649)
T COG2766 67 RVIDRYPAFNDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMER-VPIYDLD 136 (649)
T ss_pred hhhhcchhHhhhccHHHHHHHHHHHHhhhhhccchhhhhheeeccCCCchHHHHHHHHHHhhh-CCceecc
Confidence 33445566899999988887665544444444333 346778999999999999999988854 4555554
No 428
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.59 E-value=0.0018 Score=63.52 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.-+++.|||||||||+|+.|++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 457889999999999999999998
No 429
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.59 E-value=0.0019 Score=58.26 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.-+++.||||+||||++++|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35789999999999999999998863
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.58 E-value=0.0022 Score=59.85 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 012719 69 LLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l 90 (458)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998766666665
No 431
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.58 E-value=0.16 Score=47.97 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=47.1
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCC--eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHH
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSP--IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQ 375 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~--i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 375 (458)
.+.++++|++..- .--.+.+...+-..+.- -+|+.+ .....+|+.+++-+..+-+-..+..++..
T Consensus 98 ~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~------------Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~ 164 (241)
T PF04665_consen 98 PRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLS------------QSYFHLPPNIRSNIDYFIIFNNSKRDLEN 164 (241)
T ss_pred CCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEe------------eecccCCHHHhhcceEEEEecCcHHHHHH
Confidence 3479999998641 11122233333333222 355566 55678999999888766323578888777
Q ss_pred HHHHHHHhcCCccCHHHHHHH
Q 012719 376 ILAIRAQVEEIVLDEESLAHL 396 (458)
Q Consensus 376 il~~~~~~~~~~i~~~~l~~i 396 (458)
++... ++..+.+.+...
T Consensus 165 i~~~~----~~~~~~~~~~~~ 181 (241)
T PF04665_consen 165 IYRNM----NIKGPKEEFLDF 181 (241)
T ss_pred HHHhc----ccccchHHHHHH
Confidence 66654 444444433333
No 432
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.58 E-value=0.0056 Score=53.89 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=38.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccch---hhh-----hhHHHHHHHHHHHhcc
Q 012719 67 RALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSS---EVK-----KTEILMENFRRAIGLR 126 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~---~~~-----~~~~l~~~f~~a~~~~ 126 (458)
.-+.|+|.||+||||+|++|.+.|. ...+.+.+++..+-.. ..+ ..++++.....|..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~ 71 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLA 71 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999882 2255777766554432 222 2334666655555444
No 433
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.58 E-value=0.0034 Score=60.60 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=38.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCC-ccEEEecCCccc--c-hh-hhhhH-HHHHHHHHHHhccccCCceEEEcccccc
Q 012719 69 LLLAGPPGTGKTALALGICQELGSK-VPFCPMVGSEVY--S-SE-VKKTE-ILMENFRRAIGLRIKENKEVYEGEVTEL 141 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~-~p~i~l~~~~~~--~-~~-~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l 141 (458)
++++|.||+|||++|+.|+..+... .....++...+. . .| ....+ .++..++.+.........++++|..-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999987321 334455533332 1 11 12223 3555555555444455688888865444
No 434
>PRK04182 cytidylate kinase; Provisional
Probab=96.57 E-value=0.0022 Score=57.66 Aligned_cols=29 Identities=34% Similarity=0.728 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
.+++.|+||||||++|+.||+.++ ++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg--~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG--LKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CcEec
Confidence 478999999999999999999998 55654
No 435
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.57 E-value=0.016 Score=59.50 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
+-.+=+.||+|+|||||||.+.....+..--+++++.++
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 346779999999999999999887654333566665544
No 436
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.57 E-value=0.0086 Score=64.16 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.8
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhh
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALE 323 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE 323 (458)
...+|+|||+.+++......|++++.
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~ 284 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALP 284 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcC
Confidence 34799999999999999999998874
No 437
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.56 E-value=0.0048 Score=62.30 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC---CccEEEecCC-ccc-----------chhhhhhH-HHHHHHHHHHhccccCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGS---KVPFCPMVGS-EVY-----------SSEVKKTE-ILMENFRRAIGLRIKEN 130 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~---~~p~i~l~~~-~~~-----------~~~~~~~~-~l~~~f~~a~~~~~~~~ 130 (458)
..+|++||+|+||||+++++..+++. ....+.+..+ ++. ...++... ...+.++.+.. ..|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR---~~P 226 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALR---RAP 226 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhc---cCC
Confidence 36889999999999999999988842 2234444332 221 11122111 24444554443 569
Q ss_pred ceEEEccccc
Q 012719 131 KEVYEGEVTE 140 (458)
Q Consensus 131 ~ii~iDE~d~ 140 (458)
.+|+++|+-.
T Consensus 227 D~I~vGEiRd 236 (372)
T TIGR02525 227 KIIGVGEIRD 236 (372)
T ss_pred CEEeeCCCCC
Confidence 9999999843
No 438
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.56 E-value=0.0069 Score=52.74 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=42.7
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc--chhhhhhHHHHHHHHHHHhccccCCceEEEccccc
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY--SSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~--~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
.++..+.+.||+|+||||++++++..+...---+.+.+...+ ....+..+.-+-.+..+.. ..|.++++||-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~---~~p~illlDEP~~ 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLL---ENPNLLLLDEPTN 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHh---cCCCEEEEeCCcc
Confidence 455789999999999999999999877432222333221000 0102222222222333332 4599999998754
No 439
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.56 E-value=0.008 Score=53.95 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
.+++.||||||||++|..++..++. +.+.+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~--~~~~iat~~~ 37 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL--QVLYIATAQP 37 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC--CcEeCcCCCC
Confidence 5899999999999999999998873 4666655443
No 440
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.55 E-value=0.0056 Score=60.86 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
...++|.|+||||||||++.|+..++ .+++.-.+.++..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~--~~~v~E~~R~~~~ 200 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN--TTSAWEYAREYVE 200 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC--CCEEeehhHHHHH
Confidence 35899999999999999999999988 5566655554443
No 441
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.55 E-value=0.0023 Score=57.06 Aligned_cols=29 Identities=31% Similarity=0.668 Sum_probs=24.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
-+.++|++|||||++|+.+++.++ +|++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg--~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS--LKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--Cceec
Confidence 378999999999999999999998 45544
No 442
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.54 E-value=0.01 Score=57.30 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=53.3
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCC-cccchh-----h
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGS-EVYSSE-----V 109 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~-~~~~~~-----~ 109 (458)
.+++++.-.+.....+. .++... ...++|.||+|+||||+++++...+.. ...++.+..+ ++.... +
T Consensus 57 ~~l~~lg~~~~~~~~l~---~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v 130 (264)
T cd01129 57 LDLEKLGLKPENLEIFR---KLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQV 130 (264)
T ss_pred CCHHHcCCCHHHHHHHH---HHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEe
Confidence 34666654444444333 222222 236899999999999999999887742 2234444322 221111 1
Q ss_pred hhh-H-HHHHHHHHHHhccccCCceEEEccccc
Q 012719 110 KKT-E-ILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 110 ~~~-~-~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
... . ...+.++.+.. ..|.+++++|+..
T Consensus 131 ~~~~~~~~~~~l~~~lR---~~PD~i~vgEiR~ 160 (264)
T cd01129 131 NEKAGLTFARGLRAILR---QDPDIIMVGEIRD 160 (264)
T ss_pred CCcCCcCHHHHHHHHhc---cCCCEEEeccCCC
Confidence 111 1 24444554443 5699999999843
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.53 E-value=0.0083 Score=54.19 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=43.9
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc--cchh--hhhhHHHHHHHHHHHhccccCCceEEEcccc
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV--YSSE--VKKTEILMENFRRAIGLRIKENKEVYEGEVT 139 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~--~~~~--~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d 139 (458)
.++..+.+.||.|+|||||.+.++..+...---+.+.+..+ .... .+..+.-+-.+..+.. ..|.++++||-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~---~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALL---RNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHh---cCCCEEEEECCc
Confidence 34567889999999999999999987743222334433211 1111 2222222222333333 459999999875
Q ss_pred c
Q 012719 140 E 140 (458)
Q Consensus 140 ~ 140 (458)
+
T Consensus 100 s 100 (177)
T cd03222 100 A 100 (177)
T ss_pred c
Confidence 4
No 444
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0077 Score=57.51 Aligned_cols=128 Identities=23% Similarity=0.225 Sum_probs=81.6
Q ss_pred ccceEEEEcccchhc-----------HHHHHHHHHHhhc-----cCCC-eEEEecCCccccccCCCCCCCCCCChhHhh-
Q 012719 297 LVPGVLFIDEVHMLD-----------MECFSYLNRALES-----SLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLD- 358 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~-----------~~~~~~Ll~~lE~-----~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s- 358 (458)
-.+.|+||||++... .+.|.++|.++.. .+.+ =+|++| +....|.|+|..
T Consensus 277 ~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimAT------------nrie~LDPaLiRP 344 (440)
T KOG0726|consen 277 HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMAT------------NRIETLDPALIRP 344 (440)
T ss_pred cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEec------------ccccccCHhhcCC
Confidence 446899999999984 5678887777763 2334 588899 556778888772
Q ss_pred -hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHH
Q 012719 359 -RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEES-LAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEV 435 (458)
Q Consensus 359 -R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~ 435 (458)
|+. .|.|+.+++..-.+|++.+-... .+.+++ ++.++..-..-|-...-.++.-|..+|...-+-.+|.+|...+
T Consensus 345 GrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka 422 (440)
T KOG0726|consen 345 GRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKA 422 (440)
T ss_pred CccccccccCCCchhhhceeEEEeeccc--chhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHH
Confidence 443 34898888888888887553322 222221 2222211102233344446777777777666778999998887
Q ss_pred HHh
Q 012719 436 KAL 438 (458)
Q Consensus 436 ~~~ 438 (458)
..-
T Consensus 423 ~e~ 425 (440)
T KOG0726|consen 423 KEK 425 (440)
T ss_pred HHH
Confidence 663
No 445
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.52 E-value=0.025 Score=64.35 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=26.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEE
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVI 331 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~i 331 (458)
.||+|||+.+++......|++..+.....+++
T Consensus 470 ~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVL 501 (1102)
T PRK13826 470 TVFVLDEAGMVASRQMALFVEAVTRAGAKLVL 501 (1102)
T ss_pred cEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 69999999999999999999998865544433
No 446
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.51 E-value=0.0059 Score=60.24 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=48.3
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCCcccch----------------hhhhhHHHHHHHHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGSEVYSS----------------EVKKTEILMENFRRAI 123 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~~~~~~----------------~~~~~~~l~~~f~~a~ 123 (458)
.|.++++-++++||||||||+||..++... ....+.+.++..+.... .....+.........
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l- 128 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETL- 128 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH-
Confidence 566667788999999999999998876654 21234555544322111 111111111122221
Q ss_pred hccccCCceEEEccccccCcc
Q 012719 124 GLRIKENKEVYEGEVTELSPE 144 (458)
Q Consensus 124 ~~~~~~~~ii~iDE~d~l~~~ 144 (458)
.+...+.++++|-+.++.+.
T Consensus 129 -i~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 129 -VRSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred -hhccCCcEEEEcchhhhccc
Confidence 12346899999999998864
No 447
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.51 E-value=0.0019 Score=58.79 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++|.||+|+||||+++.|+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4788999999999999999999876
No 448
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.50 E-value=0.037 Score=61.00 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.5
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.-...++..+.+.||+|+||||+++.++..+.+
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 334456778999999999999999999988754
No 449
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.50 E-value=0.0054 Score=64.28 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=53.3
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCC-cccchhhhhhH-
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGS-EVYSSEVKKTE- 113 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~-~~~~~~~~~~~- 113 (458)
.+|+++.-.++....+..++ ..+ ..-++++||+|+||||+.+++...++. ...++.+..+ ++.-..+...+
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~---~~~---~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v 292 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLI---RRP---HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQV 292 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHH---hcC---CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEE
Confidence 35666655555555444333 221 124789999999999999988877753 2335555332 22222222111
Q ss_pred ------HHHHHHHHHHhccccCCceEEEccccc
Q 012719 114 ------ILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 114 ------~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
.....++.+. ...|.+++++|+-.
T Consensus 293 ~~~~g~~f~~~lr~~L---R~dPDvI~vGEiRd 322 (486)
T TIGR02533 293 NPKIGLTFAAGLRAIL---RQDPDIIMVGEIRD 322 (486)
T ss_pred ccccCccHHHHHHHHH---hcCCCEEEEeCCCC
Confidence 1223333333 26699999999843
No 450
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.50 E-value=0.0086 Score=59.17 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=48.5
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCCcccch----------------hhhhhHHHHHHHHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGSEVYSS----------------EVKKTEILMENFRRAI 123 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~~~~~~----------------~~~~~~~l~~~f~~a~ 123 (458)
.|.+.++-+.++||||||||++|..++... ....+.+.++..+-... .....+...+.....
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l- 128 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSL- 128 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHH-
Confidence 466666778899999999999999987654 11134555544321111 111112112222222
Q ss_pred hccccCCceEEEccccccCcc
Q 012719 124 GLRIKENKEVYEGEVTELSPE 144 (458)
Q Consensus 124 ~~~~~~~~ii~iDE~d~l~~~ 144 (458)
.+...+.++++|-+-++.+.
T Consensus 129 -i~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 129 -VRSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred -HhccCCCEEEEcchHhhccc
Confidence 12346899999999999874
No 451
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.029 Score=52.81 Aligned_cols=129 Identities=23% Similarity=0.221 Sum_probs=86.4
Q ss_pred cccceEEEEcccchhc-----------HHHHHHHHHHhhc---cCC--Ce-EEEecCCccccccCCCCCCCCCCChhHhh
Q 012719 296 ELVPGVLFIDEVHMLD-----------MECFSYLNRALES---SLS--PI-VIFATNRGICNIRGTDMNSPHGIPLDLLD 358 (458)
Q Consensus 296 ~~~~~Vl~IDE~~~l~-----------~~~~~~Ll~~lE~---~~~--~i-~il~tn~~~~~~~~~~~~~~~~l~~~l~s 358 (458)
|..+.|+||||++.+. .++|.+.|.++.. ..+ .+ +|.+|| ...-|.|+|+.
T Consensus 262 EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN------------RvDiLDPALlR 329 (424)
T KOG0652|consen 262 EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN------------RVDILDPALLR 329 (424)
T ss_pred ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc------------cccccCHHHhh
Confidence 3456899999999873 5677777777653 222 23 566674 44566777662
Q ss_pred --hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHH
Q 012719 359 --RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEV 435 (458)
Q Consensus 359 --R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~ 435 (458)
|+. .+.|+-++++...+|++.+..+.++.=+- -.+.++......+-..+-..+--|..+|..++...|+.++.-++
T Consensus 330 SGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~Dv-NfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmeg 408 (424)
T KOG0652|consen 330 SGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDV-NFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEG 408 (424)
T ss_pred cccccccccCCCCChHHHHHHHHHhhhhcCCCCCC-CHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHH
Confidence 443 44999999999999999998887664211 13344444322334445556667788888888888999988776
Q ss_pred HH
Q 012719 436 KA 437 (458)
Q Consensus 436 ~~ 437 (458)
+-
T Consensus 409 I~ 410 (424)
T KOG0652|consen 409 IL 410 (424)
T ss_pred HH
Confidence 55
No 452
>PLN02199 shikimate kinase
Probab=96.48 E-value=0.0033 Score=60.86 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
++++++|.|++|+|||++++.||+.++ .+|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg--~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLG--YTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC--CCEEehH
Confidence 356999999999999999999999998 6677654
No 453
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.46 E-value=0.0088 Score=53.20 Aligned_cols=75 Identities=21% Similarity=0.172 Sum_probs=44.7
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc--------h---h---hhhhHHHHHHHHHHHhcccc
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS--------S---E---VKKTEILMENFRRAIGLRIK 128 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~--------~---~---~~~~~~l~~~f~~a~~~~~~ 128 (458)
..++..+.+.||+|+|||||.+.++..+...---+.+.+.++.. . + .+..+.-+-.+..+.. .
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~---~ 99 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALA---R 99 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHh---c
Confidence 34567899999999999999999998764322234443322211 0 0 1112222223333443 4
Q ss_pred CCceEEEccccc
Q 012719 129 ENKEVYEGEVTE 140 (458)
Q Consensus 129 ~~~ii~iDE~d~ 140 (458)
.|.++++||-.+
T Consensus 100 ~p~illlDEP~~ 111 (163)
T cd03216 100 NARLLILDEPTA 111 (163)
T ss_pred CCCEEEEECCCc
Confidence 599999999754
No 454
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.46 E-value=0.05 Score=58.67 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=27.9
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
.-...++..+.+.||+|+|||||++.++..+.+.
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~ 396 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID 396 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 3344556789999999999999999999988643
No 455
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0028 Score=56.95 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..+.|.|+||+|||++|+.|+..+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999883
No 456
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.45 E-value=0.0043 Score=52.34 Aligned_cols=30 Identities=37% Similarity=0.684 Sum_probs=24.8
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
.++.-++|.|+=|+|||++++++++.++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 445679999999999999999999999753
No 457
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.44 E-value=0.041 Score=59.21 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
+.-...++..+.+.||+|+||||+++.++....+.
T Consensus 359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~ 393 (574)
T PRK11160 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393 (574)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33444567799999999999999999999987543
No 458
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.011 Score=55.06 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 459
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.41 E-value=0.0069 Score=59.03 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
++.++|.||+|+||||++..||..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 460
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.027 Score=56.00 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=98.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhc------------HHHHHHHHHHhhccC------CCeEEE
Q 012719 271 KTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLD------------MECFSYLNRALESSL------SPIVIF 332 (458)
Q Consensus 271 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~------------~~~~~~Ll~~lE~~~------~~i~il 332 (458)
...++...|.+-.+.+.-.++.... -.+.++|||||+.|. ..+-+-||--|+... .-++++
T Consensus 278 sstltSKwRGeSEKlvRlLFemARf-yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHH-hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 3344555555555555444433222 235799999999983 446777888887431 126666
Q ss_pred ecCCccccccCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHh
Q 012719 333 ATNRGICNIRGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQL 411 (458)
Q Consensus 333 ~tn~~~~~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~l 411 (458)
++. |-|..|..+|+.|+. .|.++.++.+.....++........ -++--++.|++.+...+-....++
T Consensus 357 AAT-----------N~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 357 AAT-----------NFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred ecc-----------CCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHH
Confidence 652 789999999999995 5588888888777777655433222 233346677777733344444455
Q ss_pred hHHHHHHHhh-----------------hCCCCccHHHHHHHHHhhhchHHHH
Q 012719 412 LYPASVVAKM-----------------NGRDSICKADVEEVKALYLDAKSSA 446 (458)
Q Consensus 412 l~~a~~~a~~-----------------~~~~~it~~~v~~~~~~~~~~~~~~ 446 (458)
++-|..++.. .-...|+.++++.|+. ..+.|+
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~---~v~pSv 473 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALR---KVRPSV 473 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHH---HcCcCC
Confidence 5555444432 1123488888888887 666665
No 461
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.40 E-value=0.0031 Score=58.02 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.-+++.|+||+|||++|+.||..++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999999987
No 462
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.39 E-value=0.06 Score=57.84 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=27.4
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
-...++..+.+.|++|+|||||++.++....+.
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~ 385 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD 385 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 344556789999999999999999999988643
No 463
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.38 E-value=0.045 Score=60.54 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.1
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
.-...++..+.+.||+|+|||||++.++..+.+.
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3344567799999999999999999999988643
No 464
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.37 E-value=0.14 Score=45.23 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHhhccccccceEEEEcccchhcH---HHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 285 VVNRFIDEGAAELVPGVLFIDEVHMLDM---ECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~~Vl~IDE~~~l~~---~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
..++.+..+.+ .+|++||+..+-. -..+.++.+++..|.. -+|++. ...|+.|.++.
T Consensus 86 ~a~~~~~~~~~----dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTG---------------r~~p~~l~e~A 146 (159)
T cd00561 86 FAKEAIASGEY----DLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTG---------------RNAPKELIEAA 146 (159)
T ss_pred HHHHHHhcCCC----CEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEEC---------------CCCCHHHHHhC
Confidence 34444555566 9999999998721 1344566677766655 455555 35677788877
Q ss_pred ccc
Q 012719 361 VII 363 (458)
Q Consensus 361 ~~i 363 (458)
..+
T Consensus 147 D~V 149 (159)
T cd00561 147 DLV 149 (159)
T ss_pred cee
Confidence 655
No 465
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.37 E-value=0.003 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 012719 69 LLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l 90 (458)
+++.|+||+|||++|+.|+..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 466
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.35 E-value=0.063 Score=57.17 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 57 DMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 57 ~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+-+.-...++..+.+.||+|+||||+++.++....+
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 333444556778999999999999999999987754
No 467
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.35 E-value=0.062 Score=59.28 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=27.6
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.-...++..+.+.||+|+||||+++.++....+
T Consensus 477 ~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 334456779999999999999999999998754
No 468
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.34 E-value=0.0034 Score=57.92 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..+++.||+|||||++++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999999874
No 469
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.32 E-value=0.0055 Score=58.10 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHH-hCCCccEEEecCC
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQE-LGSKVPFCPMVGS 102 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~-l~~~~p~i~l~~~ 102 (458)
+..|.+++..+|++||||||||++|..++.. +...-+.+.++..
T Consensus 14 l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 14 LHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred hcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 4567777888999999999999999887654 3322445555543
No 470
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.068 Score=50.16 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.1
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
..++.+..++||.|+|||||.+.++.+..+
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 455679999999999999999999998854
No 471
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.059 Score=52.14 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
.+.-+-|.||+|+||||+.|++|....+..-.|.+.+.
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~ 64 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE
Confidence 44578899999999999999999988655556666655
No 472
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.29 E-value=0.065 Score=59.22 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=28.5
Q ss_pred HHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 58 MIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 58 ~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
-+.-...++..+.+.||+|+||||+++.++....+
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 33444556779999999999999999999998754
No 473
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.013 Score=55.18 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=86.2
Q ss_pred eEEEEcccchh-----------cHHHHHHHHHHhh-----ccCCC-eEEEecCCccccccCCCCCCCCCCChhHhh--hh
Q 012719 300 GVLFIDEVHML-----------DMECFSYLNRALE-----SSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLD--RL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l-----------~~~~~~~Ll~~lE-----~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s--R~ 360 (458)
.++|+||++.. +.++|.+.|.++. +++.. -++++| +.|..|.|+|+. |+
T Consensus 272 ciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmat------------nrpdtldpallrpgrl 339 (435)
T KOG0729|consen 272 CIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMAT------------NRPDTLDPALLRPGRL 339 (435)
T ss_pred EEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeec------------CCCCCcCHhhcCCccc
Confidence 89999999987 3678888887765 34445 467788 667788888873 45
Q ss_pred cc-cccCCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 361 VI-IRTQIYGPAEMIQILAIRAQVEEIVLDEE-SLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 361 ~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~-~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.. +.|..++.+-..+|++.+++...+ +.+ -.++|+.++.+..-......+--|..+|...-+...|..+...|++
T Consensus 340 drkvef~lpdlegrt~i~kihaksmsv--erdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~ 416 (435)
T KOG0729|consen 340 DRKVEFGLPDLEGRTHIFKIHAKSMSV--ERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVN 416 (435)
T ss_pred ccceeccCCcccccceeEEEecccccc--ccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Confidence 43 388888889999999888765444 222 2455666663333344455677777777766677788888877766
No 474
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.29 E-value=0.078 Score=57.08 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=28.0
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+.-...++..+.+.||+|+|||||++.++..+.+
T Consensus 359 inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 3344556678999999999999999999998753
No 475
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.29 E-value=0.016 Score=57.84 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC--eEEEecCCccccccCCCCCCCCC--CChhHhhhhcccccCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP--IVIFATNRGICNIRGTDMNSPHG--IPLDLLDRLVIIRTQI 367 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~--i~il~tn~~~~~~~~~~~~~~~~--l~~~l~sR~~~i~~~~ 367 (458)
.+|-+||++.-+....-.|.++++..... +++.++||.+...+.+-+....- .+.-|..||.++.+..
T Consensus 195 ~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS 266 (467)
T KOG2383|consen 195 ILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDS 266 (467)
T ss_pred eeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCChHHHhhcchhhhhhhhHHHHHHHhheEEecCC
Confidence 78889999999988888899999877655 77778888776554432222222 2245678887765554
No 476
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.28 E-value=0.068 Score=57.71 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=29.1
Q ss_pred HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 57 DMIRQKKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 57 ~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+-+.-...++..+.+.|++|+|||||++.++....+
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 334445556778999999999999999999988754
No 477
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.28 E-value=0.012 Score=56.71 Aligned_cols=71 Identities=21% Similarity=0.401 Sum_probs=43.6
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhCCCcc--EEEecCC-cccc---------hhhhh-hHHHHHHHHHHHhccccCCce
Q 012719 67 RA-LLLAGPPGTGKTALALGICQELGSKVP--FCPMVGS-EVYS---------SEVKK-TEILMENFRRAIGLRIKENKE 132 (458)
Q Consensus 67 ~~-~Ll~GppGtGKT~lA~alA~~l~~~~p--~i~l~~~-~~~~---------~~~~~-~~~l~~~f~~a~~~~~~~~~i 132 (458)
++ +|.+||+||||||...++-.++|...+ .+.+-.+ +++. .++|. |.......+.|.. ..|.|
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALR---eDPDV 201 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALR---EDPDV 201 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhh---cCCCE
Confidence 34 667899999999999999999976544 3333222 2222 12333 1123334444432 56999
Q ss_pred EEEccccc
Q 012719 133 VYEGEVTE 140 (458)
Q Consensus 133 i~iDE~d~ 140 (458)
|+++|+-+
T Consensus 202 IlvGEmRD 209 (353)
T COG2805 202 ILVGEMRD 209 (353)
T ss_pred EEEecccc
Confidence 99999844
No 478
>PRK07667 uridine kinase; Provisional
Probab=96.27 E-value=0.0069 Score=55.53 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 57 DMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 57 ~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.+......+.-+.+.|+||+||||+|+.|+..++
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44433333334567899999999999999999884
No 479
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.27 E-value=0.1 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+++||++|.|||+.|..+|-..
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHH
Confidence 579999999999999999998655
No 480
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.014 Score=51.45 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=44.4
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc----------hh---hhhhHHHHHHHHHHHhccccCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS----------SE---VKKTEILMENFRRAIGLRIKEN 130 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~----------~~---~~~~~~l~~~f~~a~~~~~~~~ 130 (458)
.++..+.+.||+|+|||++.++++..+...---+.+.+..... .+ ....+.-+-.+..+.. ..|
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~---~~~ 99 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALL---LNP 99 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHh---cCC
Confidence 3456899999999999999999998775322234444432211 00 1222222222333443 349
Q ss_pred ceEEEccccc
Q 012719 131 KEVYEGEVTE 140 (458)
Q Consensus 131 ~ii~iDE~d~ 140 (458)
.++++||..+
T Consensus 100 ~i~ilDEp~~ 109 (157)
T cd00267 100 DLLLLDEPTS 109 (157)
T ss_pred CEEEEeCCCc
Confidence 9999999765
No 481
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.24 E-value=0.0036 Score=57.43 Aligned_cols=24 Identities=46% Similarity=0.699 Sum_probs=21.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCC
Q 012719 69 LLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+-+.||+|+||||+|+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 568999999999999999999974
No 482
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.24 E-value=0.032 Score=59.15 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=26.7
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.-...++.++++.||+|||||++.|++|..-.
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 33455678999999999999999999998653
No 483
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.23 E-value=0.0081 Score=64.19 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 41 GFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 41 ~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..-..++.+ .|.++.......+..++|+|+|||||||+|+.||..++
T Consensus 370 ~~f~rpeV~~---iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 370 EWFSFPEVVA---ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred hhhcHHHHHH---HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 3344455544 33344444444456889999999999999999999997
No 484
>PRK13975 thymidylate kinase; Provisional
Probab=96.22 E-value=0.0043 Score=56.79 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
.-+.|.|++|+||||+++.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358899999999999999999999853
No 485
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.21 E-value=0.05 Score=51.81 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=33.7
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
..+++.-+.|.||.|.||||+.+.|...+.+.--.|.+.+-+.
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~P 88 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDP 88 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCc
Confidence 4555667999999999999999999988865555677766443
No 486
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.031 Score=49.77 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=40.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCCcccc--------hhhhhhHHHHHHHHHHHhc
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGSEVYS--------SEVKKTEILMENFRRAIGL 125 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~~~~~--------~~~~~~~~l~~~f~~a~~~ 125 (458)
+..+.|+|.+|+||||+|.+|.+.|.. .....-+++..+-. +.-+..++++.+-..|..+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll 91 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLL 91 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998822 14466666654432 2233345666666656543
No 487
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.20 E-value=0.054 Score=59.86 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
+.-...++..+.+.||+|+||||+++.++..+.+.
T Consensus 500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 34445567799999999999999999999988643
No 488
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.018 Score=56.76 Aligned_cols=107 Identities=22% Similarity=0.318 Sum_probs=69.5
Q ss_pred cccceEEEEcccchhcH-------HH-------HHHHHHHhhccCC-CeEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 296 ELVPGVLFIDEVHMLDM-------EC-------FSYLNRALESSLS-PIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 296 ~~~~~Vl~IDE~~~l~~-------~~-------~~~Ll~~lE~~~~-~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
++.|.++||||++.+-. |+ +-++..=+-.... .++|+++. |.|..+..++++|+
T Consensus 184 Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT-----------NRP~DlDeAiiRR~ 252 (386)
T KOG0737|consen 184 KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT-----------NRPFDLDEAIIRRL 252 (386)
T ss_pred hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC-----------CCCccHHHHHHHhC
Confidence 56789999999998741 11 1111111112222 35555542 78899999999999
Q ss_pred c-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHH
Q 012719 361 V-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYP 414 (458)
Q Consensus 361 ~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~ 414 (458)
. .+.+.-++.++..+||+...+.+.++ ++=-+..++..+...+.+++.+++..
T Consensus 253 p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 253 PRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred cceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 5 45899999999999999999988875 33336667777633344444444433
No 489
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.19 E-value=0.012 Score=59.05 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
...+++||||||||++++.+++.+..
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999998844
No 490
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.19 E-value=0.016 Score=52.25 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=25.1
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++..+.+.||+|+|||+|++.++..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34567899999999999999999998764
No 491
>PLN02842 nucleotide kinase
Probab=96.17 E-value=0.0048 Score=64.18 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=27.4
Q ss_pred EEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchh
Q 012719 70 LLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSE 108 (458)
Q Consensus 70 Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~ 108 (458)
++.|||||||||+|+.||+.++ +.+++..++...+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg----~~hIs~gdLLR~e 35 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG----LVHISTGDLLRAE 35 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC----CCEEEccHHHHHH
Confidence 5799999999999999999987 4455555555443
No 492
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.04 Score=60.96 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=67.2
Q ss_pred cccccch--HHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCcc-------EEEecCCccc--c
Q 012719 39 AAGFVGQ--VEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG-SKVP-------FCPMVGSEVY--S 106 (458)
Q Consensus 39 l~~liG~--~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p-------~i~l~~~~~~--~ 106 (458)
++.++|. ++++..++.+. ++.+ +|-+|.|.||+|||.++..+|+.+- .++| ++.++-..+. .
T Consensus 185 ldPvigr~deeirRvi~iL~---Rrtk---~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa 258 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS---RKTK---NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGA 258 (898)
T ss_pred CCCccCCchHHHHHHHHHHh---ccCC---CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCc
Confidence 7888886 67766555443 2222 6899999999999999999998761 1122 2333322222 3
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccC
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETE 147 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~ 147 (458)
.+.|+.+ .++.+.+.+.. .....|+|+||+.-+.+....
T Consensus 259 ~~rge~E~rlk~l~k~v~~--~~~gvILfigelh~lvg~g~~ 298 (898)
T KOG1051|consen 259 KRRGEFEERLKELLKEVES--GGGGVILFLGELHWLVGSGSN 298 (898)
T ss_pred ccchHHHHHHHHHHHHHhc--CCCcEEEEecceeeeecCCCc
Confidence 4555555 57777777664 245789999999988876654
No 493
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.16 E-value=0.0041 Score=56.28 Aligned_cols=22 Identities=50% Similarity=0.655 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 012719 69 LLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l 90 (458)
++++||||||||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999987755
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.16 E-value=0.0037 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+-++|.||+|+|||++++.|+...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4688999999999999999999764
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.14 E-value=0.0054 Score=55.40 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..+.+.||+|+||||++++++..++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999999987
No 496
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.028 Score=57.15 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=71.4
Q ss_pred ccceEEEEcccchhc-----------HH-HHHHHHHHhhc---cCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc
Q 012719 297 LVPGVLFIDEVHMLD-----------ME-CFSYLNRALES---SLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV 361 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l~-----------~~-~~~~Ll~~lE~---~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~ 361 (458)
..++|+||||++.+= +. --.+|++..-- +...+++++++ |.|+.+...++.|+.
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT-----------N~P~e~Dea~~Rrf~ 312 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT-----------NRPWELDEAARRRFV 312 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecC-----------CCchHHHHHHHHHhh
Confidence 456999999999971 11 23344443322 22246666664 889999999999997
Q ss_pred cc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcC
Q 012719 362 II-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDT 403 (458)
Q Consensus 362 ~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g 403 (458)
.+ .++.++.+....+++....+.+..+++..+..|++.. +|
T Consensus 313 kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~T-eg 354 (428)
T KOG0740|consen 313 KRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVT-EG 354 (428)
T ss_pred ceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh-cC
Confidence 55 8999999999999999888888889999999999987 54
No 497
>PLN02165 adenylate isopentenyltransferase
Probab=96.14 E-value=0.0059 Score=60.30 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
+..++|.||+|||||++|..||+.++. .++..
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~--eIIsa 74 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPS--EIINS 74 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCC--ceecC
Confidence 357899999999999999999999984 34444
No 498
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.14 E-value=0.0049 Score=57.12 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.-+.+.||+|+||||++++|+..++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577899999999999999999886
No 499
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.12 E-value=0.0064 Score=61.30 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=34.2
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
.+++|+--.+.+++.|..- ..++|+.||||.||||+|+++|..+...
T Consensus 244 ~~ledY~L~dkl~eRL~er----------aeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER----------AEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred echhhcCCCHHHHHHHHhh----------hcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 3456665556666543311 1599999999999999999999988443
No 500
>PRK04328 hypothetical protein; Provisional
Probab=96.11 E-value=0.0082 Score=57.39 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=31.1
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHH-hCCCccEEEecCC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQE-LGSKVPFCPMVGS 102 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~-l~~~~p~i~l~~~ 102 (458)
..|.+++..+|++||||||||++|..++.. +...-+.+.++..
T Consensus 17 ~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 17 YGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred cCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 456667788999999999999999987754 3333445555443
Done!