Query 012719
Match_columns 458
No_of_seqs 206 out of 2216
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c9o_A RUVB-like 1; hexameric 100.0 2.2E-66 7.5E-71 537.6 25.3 454 4-457 1-455 (456)
2 3uk6_A RUVB-like 2; hexameric 100.0 1.1E-40 3.7E-45 335.4 29.1 341 3-457 7-348 (368)
3 3cf2_A TER ATPase, transitiona 100.0 5.4E-32 1.8E-36 292.7 14.7 346 32-420 196-699 (806)
4 4b4t_J 26S protease regulatory 100.0 6.3E-28 2.1E-32 241.2 25.0 233 34-439 142-389 (405)
5 4b4t_I 26S protease regulatory 100.0 4E-27 1.4E-31 236.0 25.4 230 34-437 176-421 (437)
6 4b4t_H 26S protease regulatory 100.0 3.8E-27 1.3E-31 238.3 24.4 233 34-439 203-450 (467)
7 4b4t_M 26S protease regulatory 100.0 4.9E-27 1.7E-31 238.2 24.0 240 22-437 165-420 (434)
8 4b4t_L 26S protease subunit RP 99.9 2.1E-26 7.3E-31 233.6 25.8 232 34-438 175-421 (437)
9 4b4t_K 26S protease regulatory 99.9 3.8E-26 1.3E-30 231.5 24.9 232 34-438 166-413 (428)
10 3eie_A Vacuolar protein sortin 99.9 2.9E-24 1E-28 212.0 18.3 212 34-420 12-236 (322)
11 1xwi_A SKD1 protein; VPS4B, AA 99.9 4.3E-23 1.5E-27 203.6 22.8 212 34-420 6-231 (322)
12 3cf2_A TER ATPase, transitiona 99.9 7.6E-25 2.6E-29 236.9 9.7 216 21-266 456-694 (806)
13 1g41_A Heat shock protein HSLU 99.9 1.6E-23 5.5E-28 212.7 16.4 351 40-446 15-440 (444)
14 3pfi_A Holliday junction ATP-d 99.9 3.2E-22 1.1E-26 198.4 24.7 126 300-438 108-253 (338)
15 2qp9_X Vacuolar protein sortin 99.9 6.3E-23 2.1E-27 205.1 19.5 212 34-421 45-270 (355)
16 3pvs_A Replication-associated 99.9 5.9E-23 2E-27 210.9 17.1 127 300-438 108-243 (447)
17 1sxj_C Activator 1 40 kDa subu 99.9 2.8E-22 9.5E-27 199.3 20.1 125 300-437 112-237 (340)
18 3h4m_A Proteasome-activating n 99.9 8.2E-22 2.8E-26 190.7 22.8 238 31-441 8-260 (285)
19 2zan_A Vacuolar protein sortin 99.9 4.4E-22 1.5E-26 204.8 21.0 212 33-420 127-353 (444)
20 1sxj_D Activator 1 41 kDa subu 99.9 3.8E-22 1.3E-26 198.6 19.3 125 300-437 135-261 (353)
21 3u61_B DNA polymerase accessor 99.9 2.5E-22 8.6E-27 198.1 17.4 119 300-437 107-235 (324)
22 1lv7_A FTSH; alpha/beta domain 99.9 3.9E-21 1.3E-25 183.3 23.2 232 33-439 5-252 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.7E-21 5.7E-26 185.9 20.6 234 35-439 1-249 (262)
24 3vfd_A Spastin; ATPase, microt 99.9 4.1E-21 1.4E-25 194.4 24.1 228 35-438 110-364 (389)
25 1iqp_A RFCS; clamp loader, ext 99.9 9.7E-22 3.3E-26 193.3 18.9 120 300-437 112-232 (327)
26 3b9p_A CG5977-PA, isoform A; A 99.9 4.9E-21 1.7E-25 186.4 23.5 228 35-438 16-271 (297)
27 1in4_A RUVB, holliday junction 99.9 9E-21 3.1E-25 187.9 25.7 127 300-439 104-250 (334)
28 3syl_A Protein CBBX; photosynt 99.9 9.2E-22 3.1E-26 192.5 18.0 127 300-433 132-280 (309)
29 3d8b_A Fidgetin-like protein 1 99.9 6.2E-21 2.1E-25 190.8 24.3 228 35-438 79-333 (357)
30 1jr3_A DNA polymerase III subu 99.9 3.9E-21 1.3E-25 192.7 21.2 122 299-437 120-242 (373)
31 1hqc_A RUVB; extended AAA-ATPa 99.9 4.7E-21 1.6E-25 188.6 21.1 126 300-438 92-237 (324)
32 2chg_A Replication factor C sm 99.9 1.7E-20 5.7E-25 173.2 23.5 120 300-437 104-224 (226)
33 2ce7_A Cell division protein F 99.9 9.4E-21 3.2E-25 195.0 23.7 232 34-440 10-257 (476)
34 2chq_A Replication factor C sm 99.9 2E-21 6.9E-26 190.3 16.3 120 300-437 104-224 (319)
35 1sxj_B Activator 1 37 kDa subu 99.9 7.8E-21 2.7E-25 186.5 20.0 120 300-437 109-229 (323)
36 3cf0_A Transitional endoplasmi 99.9 6.4E-21 2.2E-25 186.3 18.0 108 34-146 9-125 (301)
37 1ypw_A Transitional endoplasmi 99.9 1.5E-22 5.1E-27 222.1 6.9 200 34-263 198-415 (806)
38 2r44_A Uncharacterized protein 99.9 3.8E-20 1.3E-24 183.0 22.1 137 300-443 111-301 (331)
39 1sxj_E Activator 1 40 kDa subu 99.9 1.6E-20 5.6E-25 187.1 19.0 108 299-419 135-244 (354)
40 1njg_A DNA polymerase III subu 99.8 3.6E-20 1.2E-24 173.1 19.5 122 299-437 127-249 (250)
41 1a5t_A Delta prime, HOLB; zinc 99.8 6.2E-20 2.1E-24 181.9 22.1 100 299-416 109-209 (334)
42 1g8p_A Magnesium-chelatase 38 99.8 3.1E-20 1.1E-24 184.6 19.4 133 300-444 146-327 (350)
43 2z4s_A Chromosomal replication 99.8 3.7E-20 1.3E-24 190.1 20.3 131 300-440 196-333 (440)
44 1ofh_A ATP-dependent HSL prote 99.8 3.9E-20 1.3E-24 180.5 18.3 131 300-438 118-298 (310)
45 1sxj_A Activator 1 95 kDa subu 99.8 5.5E-20 1.9E-24 192.8 20.2 120 300-437 150-272 (516)
46 3hu3_A Transitional endoplasmi 99.8 1.5E-19 5.1E-24 187.3 21.1 226 36-437 200-457 (489)
47 3bos_A Putative DNA replicatio 99.8 1.2E-19 4.2E-24 170.0 18.4 128 300-437 106-241 (242)
48 2x8a_A Nuclear valosin-contain 99.8 1.5E-19 5.3E-24 174.0 18.2 204 34-267 4-230 (274)
49 1l8q_A Chromosomal replication 99.8 2E-19 6.8E-24 177.4 18.0 132 300-442 100-243 (324)
50 2dhr_A FTSH; AAA+ protein, hex 99.8 3.4E-19 1.2E-23 184.4 18.5 231 35-440 26-272 (499)
51 2v1u_A Cell division control p 99.8 1.1E-18 3.9E-23 175.1 21.9 130 300-439 132-276 (387)
52 1ixz_A ATP-dependent metallopr 99.8 1.8E-18 6.3E-23 164.4 21.0 230 32-436 8-253 (254)
53 3te6_A Regulatory protein SIR3 99.8 9.6E-19 3.3E-23 170.8 19.0 132 299-441 133-317 (318)
54 2r62_A Cell division protease 99.8 4.3E-21 1.5E-25 184.0 1.2 234 34-440 5-254 (268)
55 1fnn_A CDC6P, cell division co 99.8 2.2E-17 7.4E-22 166.1 26.1 131 300-439 127-274 (389)
56 2qby_B CDC6 homolog 3, cell di 99.8 6.5E-18 2.2E-22 169.9 21.3 127 300-439 135-270 (384)
57 1iy2_A ATP-dependent metallopr 99.8 1E-17 3.6E-22 161.5 21.5 227 35-436 35-277 (278)
58 2gno_A DNA polymerase III, gam 99.8 1.7E-18 5.7E-23 169.1 15.9 91 300-414 84-175 (305)
59 1um8_A ATP-dependent CLP prote 99.8 3.3E-18 1.1E-22 172.2 17.7 87 351-437 255-363 (376)
60 3m6a_A ATP-dependent protease 99.8 3.9E-18 1.3E-22 179.4 15.1 126 300-437 177-339 (543)
61 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.6E-17 5.4E-22 172.1 17.0 133 300-442 111-288 (500)
62 2qby_A CDC6 homolog 1, cell di 99.7 8.6E-17 2.9E-21 161.2 20.4 131 299-439 129-272 (386)
63 3hws_A ATP-dependent CLP prote 99.7 2.6E-17 8.8E-22 164.9 16.5 102 42-145 17-132 (363)
64 4fcw_A Chaperone protein CLPB; 99.7 2.6E-17 8.9E-22 160.8 15.2 119 300-418 121-277 (311)
65 1d2n_A N-ethylmaleimide-sensit 99.7 4.2E-17 1.5E-21 156.6 15.6 84 18-103 11-99 (272)
66 3pxi_A Negative regulator of g 99.7 5.7E-17 1.9E-21 177.5 16.9 117 300-416 581-721 (758)
67 1r6b_X CLPA protein; AAA+, N-t 99.7 1.2E-16 4E-21 175.2 18.9 118 300-417 559-713 (758)
68 2bjv_A PSP operon transcriptio 99.7 8.3E-17 2.8E-21 153.9 14.2 125 300-432 102-250 (265)
69 3t15_A Ribulose bisphosphate c 99.7 6.2E-16 2.1E-20 150.2 18.1 83 62-146 32-116 (293)
70 1qvr_A CLPB protein; coiled co 99.6 1.1E-15 3.8E-20 169.3 16.4 118 300-417 662-817 (854)
71 3pxg_A Negative regulator of g 99.6 2.1E-15 7.2E-20 156.0 17.4 113 300-424 269-390 (468)
72 3k1j_A LON protease, ATP-depen 99.6 5.6E-15 1.9E-19 157.6 20.5 130 299-438 202-374 (604)
73 1ypw_A Transitional endoplasmi 99.6 1.7E-17 5.8E-22 182.1 0.3 204 34-267 471-695 (806)
74 1ojl_A Transcriptional regulat 99.6 1.6E-15 5.3E-20 148.2 13.9 126 300-433 98-246 (304)
75 3f9v_A Minichromosome maintena 99.6 3.5E-16 1.2E-20 166.0 9.3 143 300-442 393-590 (595)
76 1r6b_X CLPA protein; AAA+, N-t 99.6 1.3E-14 4.3E-19 159.0 18.8 132 300-440 280-434 (758)
77 1jr3_D DNA polymerase III, del 99.6 5.4E-15 1.8E-19 146.7 14.2 130 300-439 78-209 (343)
78 1qvr_A CLPB protein; coiled co 99.6 1.3E-14 4.5E-19 160.6 15.9 113 300-422 265-395 (854)
79 1w5s_A Origin recognition comp 99.6 6.7E-14 2.3E-18 141.7 19.4 129 300-438 140-292 (412)
80 3pxi_A Negative regulator of g 99.6 2.6E-14 8.9E-19 156.5 17.3 106 300-422 269-388 (758)
81 3f8t_A Predicted ATPase involv 99.5 2.6E-13 8.8E-18 137.1 19.3 143 300-445 302-489 (506)
82 1jbk_A CLPB protein; beta barr 99.5 1.2E-13 4E-18 123.9 10.5 70 300-377 117-194 (195)
83 3n70_A Transport activator; si 99.4 6.3E-13 2.2E-17 115.1 10.6 64 300-368 78-144 (145)
84 3co5_A Putative two-component 99.4 2.4E-13 8.2E-18 117.5 6.3 57 41-103 5-61 (143)
85 2p65_A Hypothetical protein PF 99.4 1.1E-12 3.7E-17 117.3 9.7 50 37-91 19-68 (187)
86 3dzd_A Transcriptional regulat 99.1 1.1E-09 3.6E-14 109.6 17.6 115 300-419 224-361 (368)
87 1ny5_A Transcriptional regulat 99.1 1.9E-09 6.6E-14 108.5 19.5 127 300-434 233-382 (387)
88 2qen_A Walker-type ATPase; unk 99.0 2.4E-08 8.1E-13 98.1 20.6 110 300-413 130-247 (350)
89 2fna_A Conserved hypothetical 98.9 4.8E-08 1.6E-12 96.1 17.7 110 299-414 138-252 (357)
90 1u0j_A DNA replication protein 98.8 1.1E-08 3.7E-13 96.7 9.8 59 329-390 192-259 (267)
91 2w58_A DNAI, primosome compone 98.7 2.1E-08 7.2E-13 91.1 8.5 102 36-142 21-128 (202)
92 2kjq_A DNAA-related protein; s 98.7 2.3E-08 7.9E-13 86.7 7.7 27 65-91 35-61 (149)
93 3ec2_A DNA replication protein 98.7 2.8E-08 9.7E-13 88.6 7.6 101 36-141 6-112 (180)
94 1tue_A Replication protein E1; 98.6 1.3E-07 4.4E-12 85.6 9.9 37 54-91 47-83 (212)
95 3cmw_A Protein RECA, recombina 98.6 2.1E-07 7.3E-12 107.7 12.3 127 35-164 1015-1201(1706)
96 4akg_A Glutathione S-transfera 98.5 1.8E-07 6.3E-12 112.7 11.4 76 300-382 1338-1432(2695)
97 2qgz_A Helicase loader, putati 98.4 2E-07 6.9E-12 90.7 5.8 100 37-141 121-226 (308)
98 4akg_A Glutathione S-transfera 98.4 7.1E-06 2.4E-10 99.1 19.9 110 300-420 699-841 (2695)
99 2cqa_A RUVB-like 2; TIP48, TIP 98.2 4.4E-07 1.5E-11 70.4 2.4 90 124-218 4-93 (95)
100 2vhj_A Ntpase P4, P4; non- hyd 98.2 3.4E-06 1.2E-10 81.6 8.4 81 61-146 118-199 (331)
101 3vkg_A Dynein heavy chain, cyt 97.9 4.4E-05 1.5E-09 93.0 12.8 75 300-381 1376-1469(3245)
102 3sr0_A Adenylate kinase; phosp 97.9 9E-06 3.1E-10 74.1 4.8 53 68-124 2-54 (206)
103 1ye8_A Protein THEP1, hypothet 97.8 0.00013 4.6E-09 64.7 11.6 68 300-378 101-173 (178)
104 2orw_A Thymidine kinase; TMTK, 97.8 6.4E-05 2.2E-09 67.2 8.2 61 300-368 78-139 (184)
105 3upu_A ATP-dependent DNA helic 97.7 0.0003 1E-08 72.0 13.7 58 27-91 12-70 (459)
106 3umf_A Adenylate kinase; rossm 97.7 2.9E-05 9.8E-10 71.3 5.1 55 64-122 27-81 (217)
107 3vkg_A Dynein heavy chain, cyt 97.6 0.00079 2.7E-08 82.3 17.2 109 300-419 658-800 (3245)
108 3cmu_A Protein RECA, recombina 97.6 8.1E-05 2.8E-09 87.5 7.6 82 61-145 1422-1521(2050)
109 3tlx_A Adenylate kinase 2; str 97.6 0.0001 3.4E-09 68.9 7.0 39 65-107 28-66 (243)
110 1qhx_A CPT, protein (chloramph 97.5 6.9E-05 2.3E-09 65.9 4.9 33 67-101 4-36 (178)
111 3trf_A Shikimate kinase, SK; a 97.5 6.2E-05 2.1E-09 66.7 4.4 32 66-99 5-36 (185)
112 3e1s_A Exodeoxyribonuclease V, 97.5 0.00022 7.5E-09 75.0 8.6 24 67-90 205-228 (574)
113 3vaa_A Shikimate kinase, SK; s 97.4 0.00011 3.6E-09 66.3 4.5 34 65-100 24-57 (199)
114 2iut_A DNA translocase FTSK; n 97.4 0.0056 1.9E-07 63.7 17.7 94 297-400 342-463 (574)
115 2r2a_A Uncharacterized protein 97.4 0.00012 4E-09 66.3 4.1 24 67-90 6-29 (199)
116 1z6t_A APAF-1, apoptotic prote 97.3 0.0066 2.3E-07 63.8 17.9 48 38-88 122-169 (591)
117 1zuh_A Shikimate kinase; alpha 97.3 0.00015 5.1E-09 63.2 4.3 31 67-99 8-38 (168)
118 3iij_A Coilin-interacting nucl 97.3 0.00014 4.9E-09 64.1 4.0 32 66-99 11-42 (180)
119 2rhm_A Putative kinase; P-loop 97.3 0.00019 6.5E-09 63.8 4.8 31 66-98 5-35 (193)
120 1via_A Shikimate kinase; struc 97.3 0.00014 4.9E-09 63.9 3.8 30 68-99 6-35 (175)
121 1svm_A Large T antigen; AAA+ f 97.3 0.00063 2.2E-08 67.6 8.9 72 55-143 158-230 (377)
122 3kb2_A SPBC2 prophage-derived 97.3 0.00019 6.5E-09 62.5 4.6 31 68-100 3-33 (173)
123 2iyv_A Shikimate kinase, SK; t 97.3 0.00017 5.7E-09 63.9 4.1 32 67-100 3-34 (184)
124 3be4_A Adenylate kinase; malar 97.3 0.00018 6E-09 65.8 4.2 32 66-99 5-36 (217)
125 2p5t_B PEZT; postsegregational 97.2 0.00036 1.2E-08 65.4 6.4 55 47-103 10-67 (253)
126 1kag_A SKI, shikimate kinase I 97.2 0.00021 7.3E-09 62.4 4.4 30 67-98 5-34 (173)
127 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 65.3 4.2 30 68-99 2-31 (216)
128 1y63_A LMAJ004144AAA protein; 97.2 0.00018 6.1E-09 63.9 3.8 32 66-99 10-42 (184)
129 2cvh_A DNA repair and recombin 97.2 0.00047 1.6E-08 62.6 6.6 41 61-103 15-55 (220)
130 2cdn_A Adenylate kinase; phosp 97.2 0.00025 8.5E-09 63.8 4.4 32 66-99 20-51 (201)
131 3fb4_A Adenylate kinase; psych 97.2 0.00022 7.4E-09 64.9 3.9 30 68-99 2-31 (216)
132 1tev_A UMP-CMP kinase; ploop, 97.2 0.00025 8.6E-09 63.0 4.1 31 66-98 3-33 (196)
133 2b8t_A Thymidine kinase; deoxy 97.1 0.0029 1E-07 58.1 11.1 25 66-90 12-36 (223)
134 1aky_A Adenylate kinase; ATP:A 97.1 0.00029 1E-08 64.4 4.3 31 66-98 4-34 (220)
135 1e6c_A Shikimate kinase; phosp 97.1 0.00028 9.7E-09 61.5 4.0 30 67-98 3-32 (173)
136 1gvn_B Zeta; postsegregational 97.1 0.00071 2.4E-08 64.7 7.1 54 46-101 10-66 (287)
137 2x8a_A Nuclear valosin-contain 97.1 0.0024 8.3E-08 60.5 10.8 128 299-438 104-263 (274)
138 3cm0_A Adenylate kinase; ATP-b 97.1 0.00021 7.2E-09 63.2 3.1 25 67-91 5-29 (186)
139 2c95_A Adenylate kinase 1; tra 97.1 0.00029 9.8E-09 62.8 4.0 32 66-99 9-40 (196)
140 1zp6_A Hypothetical protein AT 97.1 0.00025 8.5E-09 63.1 3.5 37 65-103 8-44 (191)
141 2ze6_A Isopentenyl transferase 97.1 0.00034 1.2E-08 65.6 4.6 32 68-101 3-34 (253)
142 1ak2_A Adenylate kinase isoenz 97.1 0.00037 1.3E-08 64.3 4.7 31 67-99 17-47 (233)
143 1kht_A Adenylate kinase; phosp 97.1 0.00031 1E-08 62.3 3.8 25 67-91 4-28 (192)
144 3lw7_A Adenylate kinase relate 97.1 0.00028 9.7E-09 61.3 3.6 29 68-99 3-31 (179)
145 2bwj_A Adenylate kinase 5; pho 97.1 0.00033 1.1E-08 62.6 4.0 30 67-98 13-42 (199)
146 2vli_A Antibiotic resistance p 97.1 0.00031 1.1E-08 61.9 3.6 30 66-97 5-34 (183)
147 2pt5_A Shikimate kinase, SK; a 97.0 0.0004 1.4E-08 60.3 4.2 30 68-99 2-31 (168)
148 1knq_A Gluconate kinase; ALFA/ 97.0 0.00047 1.6E-08 60.4 4.6 27 65-91 7-33 (175)
149 1zak_A Adenylate kinase; ATP:A 97.0 0.00038 1.3E-08 63.7 4.1 25 67-91 6-30 (222)
150 3t61_A Gluconokinase; PSI-biol 97.0 0.00045 1.5E-08 62.2 4.5 30 67-98 19-48 (202)
151 1zd8_A GTP:AMP phosphotransfer 97.0 0.00036 1.2E-08 64.1 3.9 31 67-99 8-38 (227)
152 1w36_D RECD, exodeoxyribonucle 97.0 0.0018 6.2E-08 68.6 9.8 35 298-334 262-296 (608)
153 2pez_A Bifunctional 3'-phospho 97.0 0.00057 2E-08 60.2 5.0 35 65-101 4-41 (179)
154 1qf9_A UMP/CMP kinase, protein 97.0 0.00039 1.3E-08 61.6 3.8 30 67-98 7-36 (194)
155 1ly1_A Polynucleotide kinase; 97.0 0.00036 1.2E-08 61.2 3.3 25 67-91 3-28 (181)
156 4b4t_J 26S protease regulatory 97.0 0.00099 3.4E-08 66.5 6.7 71 192-266 286-365 (405)
157 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0014 4.7E-08 61.7 7.3 36 67-102 5-41 (260)
158 1ukz_A Uridylate kinase; trans 96.9 0.00048 1.6E-08 61.9 3.9 30 67-98 16-45 (203)
159 4eun_A Thermoresistant glucoki 96.9 0.00063 2.2E-08 61.2 4.6 27 65-91 28-54 (200)
160 2a5y_B CED-4; apoptosis; HET: 96.9 0.021 7.2E-07 59.6 16.7 44 43-88 131-174 (549)
161 1e4v_A Adenylate kinase; trans 96.9 0.00055 1.9E-08 62.3 4.0 30 68-99 2-31 (214)
162 2ius_A DNA translocase FTSK; n 96.9 0.023 7.8E-07 58.5 16.3 68 300-379 299-375 (512)
163 2zr9_A Protein RECA, recombina 96.9 0.0023 7.9E-08 62.9 8.3 83 61-143 56-153 (349)
164 4b4t_I 26S protease regulatory 96.9 0.0017 5.7E-08 65.2 7.2 71 192-266 320-399 (437)
165 2xb4_A Adenylate kinase; ATP-b 96.8 0.00072 2.4E-08 62.0 4.1 29 68-98 2-30 (223)
166 2plr_A DTMP kinase, probable t 96.8 0.00073 2.5E-08 60.8 3.8 27 66-92 4-30 (213)
167 1nks_A Adenylate kinase; therm 96.8 0.00052 1.8E-08 60.8 2.7 24 68-91 3-26 (194)
168 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.8E-08 60.5 4.5 25 67-91 6-30 (227)
169 2pbr_A DTMP kinase, thymidylat 96.7 0.0012 3.9E-08 58.6 4.5 31 68-100 2-35 (195)
170 3crm_A TRNA delta(2)-isopenten 96.7 0.0011 3.8E-08 64.2 4.7 37 67-105 6-42 (323)
171 3nwj_A ATSK2; P loop, shikimat 96.7 0.0014 4.9E-08 61.3 5.1 32 66-99 48-79 (250)
172 3uie_A Adenylyl-sulfate kinase 96.7 0.0012 4.1E-08 59.3 4.4 28 64-91 23-50 (200)
173 3c8u_A Fructokinase; YP_612366 96.7 0.0011 3.7E-08 60.0 4.1 38 54-91 10-47 (208)
174 3hr8_A Protein RECA; alpha and 96.7 0.0033 1.1E-07 61.8 7.9 81 61-143 56-153 (356)
175 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00079 2.7E-08 66.0 3.3 30 67-98 25-54 (359)
176 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 59.4 4.0 34 66-100 4-37 (204)
177 2jaq_A Deoxyguanosine kinase; 96.7 0.0012 4.1E-08 59.0 4.2 25 68-92 2-26 (205)
178 1g5t_A COB(I)alamin adenosyltr 96.7 0.01 3.5E-07 53.0 10.2 33 67-99 29-64 (196)
179 3sfz_A APAF-1, apoptotic pepti 96.6 0.047 1.6E-06 62.1 18.1 49 38-89 122-170 (1249)
180 1u94_A RECA protein, recombina 96.6 0.0052 1.8E-07 60.5 8.8 81 61-143 58-155 (356)
181 2z43_A DNA repair and recombin 96.6 0.0022 7.4E-08 62.4 6.0 43 61-103 102-151 (324)
182 2qor_A Guanylate kinase; phosp 96.6 0.0011 3.9E-08 59.7 3.6 28 64-91 10-37 (204)
183 3gmt_A Adenylate kinase; ssgci 96.6 0.0015 5E-08 60.2 4.4 38 68-109 10-47 (230)
184 2z0h_A DTMP kinase, thymidylat 96.6 0.0015 5.3E-08 58.0 4.4 30 68-99 2-34 (197)
185 1kgd_A CASK, peripheral plasma 96.6 0.0013 4.4E-08 58.1 3.8 27 65-91 4-30 (180)
186 2wwf_A Thymidilate kinase, put 96.6 0.00098 3.3E-08 60.1 3.0 26 66-91 10-35 (212)
187 1xp8_A RECA protein, recombina 96.6 0.0059 2E-07 60.4 8.7 82 61-144 69-167 (366)
188 2if2_A Dephospho-COA kinase; a 96.5 0.0013 4.5E-08 59.0 3.7 29 68-99 3-31 (204)
189 2bbw_A Adenylate kinase 4, AK4 96.5 0.0014 4.8E-08 60.9 3.9 26 66-91 27-52 (246)
190 3r20_A Cytidylate kinase; stru 96.5 0.0018 6.2E-08 59.9 4.6 25 67-91 10-34 (233)
191 2eyu_A Twitching motility prot 96.5 0.0019 6.3E-08 60.9 4.7 28 64-91 23-50 (261)
192 4b4t_L 26S protease subunit RP 96.5 0.0031 1.1E-07 63.8 6.5 69 194-266 321-398 (437)
193 3io5_A Recombination and repai 96.5 0.0068 2.3E-07 58.4 8.5 83 61-144 24-126 (333)
194 2yvu_A Probable adenylyl-sulfa 96.5 0.0016 5.5E-08 57.6 4.0 27 65-91 12-38 (186)
195 4b4t_H 26S protease regulatory 96.5 0.0034 1.2E-07 63.6 6.7 71 192-266 347-426 (467)
196 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0021 7.3E-08 62.7 5.1 73 65-140 170-251 (330)
197 3ake_A Cytidylate kinase; CMP 96.5 0.002 6.7E-08 57.8 4.4 30 68-99 4-33 (208)
198 1nn5_A Similar to deoxythymidy 96.5 0.0013 4.4E-08 59.4 3.1 26 66-91 9-34 (215)
199 1uj2_A Uridine-cytidine kinase 96.5 0.0021 7.1E-08 60.0 4.5 25 67-91 23-47 (252)
200 2grj_A Dephospho-COA kinase; T 96.4 0.0019 6.6E-08 57.9 3.7 30 68-99 14-43 (192)
201 1jjv_A Dephospho-COA kinase; P 96.4 0.0019 6.4E-08 58.2 3.6 28 68-98 4-31 (206)
202 3tau_A Guanylate kinase, GMP k 96.3 0.0019 6.4E-08 58.5 3.3 27 65-91 7-33 (208)
203 3foz_A TRNA delta(2)-isopenten 96.3 0.0027 9.3E-08 61.0 4.6 37 67-105 11-47 (316)
204 2j41_A Guanylate kinase; GMP, 96.3 0.0017 6E-08 58.1 3.1 26 65-90 5-30 (207)
205 1v5w_A DMC1, meiotic recombina 96.3 0.011 3.8E-07 57.9 9.1 43 61-103 117-166 (343)
206 3a8t_A Adenylate isopentenyltr 96.3 0.002 6.7E-08 62.8 3.5 35 67-103 41-75 (339)
207 4b4t_M 26S protease regulatory 96.3 0.0038 1.3E-07 63.1 5.4 71 192-266 319-398 (434)
208 1ex7_A Guanylate kinase; subst 96.3 0.0026 8.9E-08 56.7 3.8 25 67-91 2-26 (186)
209 3tr0_A Guanylate kinase, GMP k 96.3 0.0025 8.6E-08 57.0 3.7 25 66-90 7-31 (205)
210 1uf9_A TT1252 protein; P-loop, 96.2 0.0024 8.2E-08 57.0 3.5 30 67-99 9-38 (203)
211 4e22_A Cytidylate kinase; P-lo 96.2 0.0034 1.2E-07 58.6 4.7 26 66-91 27-52 (252)
212 1n0w_A DNA repair protein RAD5 96.2 0.0043 1.5E-07 56.9 5.2 31 60-90 18-48 (243)
213 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0027 9.4E-08 57.7 3.7 29 62-90 19-47 (235)
214 2bdt_A BH3686; alpha-beta prot 96.2 0.0023 7.9E-08 56.7 3.1 24 68-91 4-27 (189)
215 3jvv_A Twitching mobility prot 96.2 0.0036 1.2E-07 61.7 4.6 70 67-139 124-206 (356)
216 3a00_A Guanylate kinase, GMP k 96.2 0.0027 9.3E-08 56.3 3.4 25 67-91 2-26 (186)
217 2h92_A Cytidylate kinase; ross 96.1 0.0034 1.2E-07 57.0 4.0 30 67-98 4-33 (219)
218 1vht_A Dephospho-COA kinase; s 96.1 0.0037 1.3E-07 56.7 4.2 29 67-98 5-33 (218)
219 1m7g_A Adenylylsulfate kinase; 96.1 0.0035 1.2E-07 56.7 3.9 27 65-91 24-50 (211)
220 1ltq_A Polynucleotide kinase; 96.1 0.0027 9.2E-08 60.7 3.3 24 67-90 3-26 (301)
221 1q3t_A Cytidylate kinase; nucl 96.1 0.0045 1.6E-07 57.0 4.7 31 66-98 16-46 (236)
222 1lvg_A Guanylate kinase, GMP k 96.1 0.0031 1.1E-07 56.6 3.5 26 66-91 4-29 (198)
223 2qt1_A Nicotinamide riboside k 96.1 0.0027 9.3E-08 57.1 3.0 25 66-90 21-45 (207)
224 3lda_A DNA repair protein RAD5 96.0 0.014 4.7E-07 58.4 8.0 44 60-103 172-222 (400)
225 4a74_A DNA repair and recombin 96.0 0.0033 1.1E-07 57.2 3.2 31 61-91 20-50 (231)
226 3cmu_A Protein RECA, recombina 96.0 0.017 5.9E-07 68.2 9.8 82 62-145 1077-1175(2050)
227 3cmw_A Protein RECA, recombina 96.0 0.013 4.5E-07 68.2 8.8 82 62-143 728-824 (1706)
228 3exa_A TRNA delta(2)-isopenten 96.0 0.0042 1.4E-07 59.8 4.0 34 67-102 4-37 (322)
229 3d3q_A TRNA delta(2)-isopenten 96.0 0.0042 1.5E-07 60.5 4.0 34 67-102 8-41 (340)
230 1htw_A HI0065; nucleotide-bind 96.0 0.008 2.8E-07 52.0 5.3 31 60-90 27-57 (158)
231 1rz3_A Hypothetical protein rb 95.9 0.0086 3E-07 53.7 5.7 26 65-90 21-46 (201)
232 2dr3_A UPF0273 protein PH0284; 95.9 0.0049 1.7E-07 56.6 4.2 31 60-90 17-47 (247)
233 4b4t_K 26S protease regulatory 95.9 0.0047 1.6E-07 62.2 4.2 91 151-266 290-390 (428)
234 1odf_A YGR205W, hypothetical 3 95.9 0.01 3.6E-07 56.6 6.4 27 65-91 30-56 (290)
235 2qmh_A HPR kinase/phosphorylas 95.9 0.0031 1.1E-07 56.6 2.5 26 66-91 34-59 (205)
236 3aez_A Pantothenate kinase; tr 95.9 0.011 3.6E-07 57.2 6.5 28 64-91 88-115 (312)
237 3ney_A 55 kDa erythrocyte memb 95.9 0.0051 1.8E-07 55.3 3.9 27 65-91 18-44 (197)
238 3h1t_A Type I site-specific re 95.9 0.08 2.7E-06 55.5 13.8 46 42-90 177-222 (590)
239 2ehv_A Hypothetical protein PH 95.9 0.0041 1.4E-07 57.4 3.4 27 62-88 26-52 (251)
240 2f6r_A COA synthase, bifunctio 95.8 0.0048 1.6E-07 58.7 3.7 30 67-99 76-105 (281)
241 3asz_A Uridine kinase; cytidin 95.8 0.0048 1.6E-07 55.6 3.5 27 65-91 5-31 (211)
242 2v9p_A Replication protein E1; 95.8 0.0087 3E-07 57.6 5.4 35 56-90 116-150 (305)
243 4eaq_A DTMP kinase, thymidylat 95.8 0.0055 1.9E-07 56.4 3.8 27 66-92 26-52 (229)
244 2fz4_A DNA repair protein RAD2 95.8 0.028 9.7E-07 51.8 8.5 34 67-102 109-142 (237)
245 1taf_A TFIID TBP associated fa 95.8 0.063 2.2E-06 39.1 8.5 62 375-440 5-67 (68)
246 3eph_A TRNA isopentenyltransfe 95.7 0.0076 2.6E-07 60.0 4.5 33 67-101 3-35 (409)
247 1znw_A Guanylate kinase, GMP k 95.7 0.0065 2.2E-07 54.8 3.7 28 64-91 18-45 (207)
248 3zvl_A Bifunctional polynucleo 95.7 0.0045 1.6E-07 62.3 3.0 26 66-91 258-283 (416)
249 1gtv_A TMK, thymidylate kinase 95.7 0.0028 9.4E-08 57.2 1.2 24 68-91 2-25 (214)
250 1cr0_A DNA primase/helicase; R 95.6 0.0087 3E-07 57.1 4.7 30 61-90 30-59 (296)
251 1z6g_A Guanylate kinase; struc 95.6 0.0066 2.2E-07 55.4 3.5 27 64-90 21-47 (218)
252 3fdi_A Uncharacterized protein 95.6 0.008 2.7E-07 54.1 4.0 30 67-98 7-36 (201)
253 1nlf_A Regulatory protein REPA 95.6 0.0068 2.3E-07 57.3 3.5 28 63-90 27-54 (279)
254 1s96_A Guanylate kinase, GMP k 95.5 0.008 2.7E-07 55.0 3.7 28 64-91 14-41 (219)
255 1x6v_B Bifunctional 3'-phospho 95.5 0.011 3.7E-07 62.4 5.1 34 66-101 52-88 (630)
256 2oap_1 GSPE-2, type II secreti 95.5 0.01 3.5E-07 61.3 4.7 36 66-101 260-295 (511)
257 4a82_A Cystic fibrosis transme 95.5 0.048 1.6E-06 57.2 9.9 38 64-101 365-402 (578)
258 1rj9_A FTSY, signal recognitio 95.4 0.012 4.2E-07 56.6 4.9 40 65-104 101-140 (304)
259 2i3b_A HCR-ntpase, human cance 95.4 0.0089 3E-07 53.3 3.6 25 67-91 2-26 (189)
260 4gp7_A Metallophosphoesterase; 95.4 0.0093 3.2E-07 52.0 3.7 22 65-86 8-29 (171)
261 2r8r_A Sensor protein; KDPD, P 95.4 0.012 4.2E-07 53.8 4.5 55 347-405 143-197 (228)
262 1sq5_A Pantothenate kinase; P- 95.4 0.016 5.5E-07 55.8 5.6 26 66-91 80-105 (308)
263 3p32_A Probable GTPase RV1496/ 95.4 0.03 1E-06 55.0 7.7 34 67-100 80-116 (355)
264 4b3f_X DNA-binding protein smu 95.4 0.013 4.6E-07 62.4 5.4 39 45-90 191-230 (646)
265 2jeo_A Uridine-cytidine kinase 95.4 0.01 3.4E-07 55.0 3.9 27 65-91 24-50 (245)
266 3dm5_A SRP54, signal recogniti 95.3 0.028 9.6E-07 56.7 7.3 25 66-90 100-124 (443)
267 4f4c_A Multidrug resistance pr 95.3 0.099 3.4E-06 60.3 12.7 29 64-92 1103-1131(1321)
268 3tqf_A HPR(Ser) kinase; transf 95.3 0.0093 3.2E-07 52.2 3.1 24 66-89 16-39 (181)
269 2zts_A Putative uncharacterize 95.3 0.011 3.6E-07 54.4 3.7 29 61-89 25-53 (251)
270 3lnc_A Guanylate kinase, GMP k 95.3 0.0069 2.4E-07 55.5 2.4 28 64-91 25-53 (231)
271 1g8f_A Sulfate adenylyltransfe 95.3 0.012 4.1E-07 60.6 4.4 27 66-92 395-421 (511)
272 1pzn_A RAD51, DNA repair and r 95.3 0.01 3.5E-07 58.3 3.7 31 60-90 125-155 (349)
273 3kw6_A 26S protease regulatory 95.2 0.055 1.9E-06 40.5 6.9 74 366-440 1-74 (78)
274 2ged_A SR-beta, signal recogni 95.2 0.018 6E-07 50.6 4.8 44 46-89 27-71 (193)
275 3vkw_A Replicase large subunit 95.1 0.048 1.6E-06 55.0 8.3 34 300-336 236-269 (446)
276 3lv8_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 54.4 3.6 28 64-91 25-52 (236)
277 2gza_A Type IV secretion syste 95.1 0.014 4.8E-07 57.6 4.3 29 64-92 173-201 (361)
278 2wsm_A Hydrogenase expression/ 95.1 0.026 9E-07 50.8 5.7 25 67-91 31-55 (221)
279 3tqc_A Pantothenate kinase; bi 95.1 0.033 1.1E-06 53.9 6.6 24 68-91 94-117 (321)
280 4edh_A DTMP kinase, thymidylat 95.0 0.014 4.9E-07 53.0 3.7 26 66-91 6-31 (213)
281 2i1q_A DNA repair and recombin 94.9 0.011 3.8E-07 57.1 2.8 30 61-90 93-122 (322)
282 2ocp_A DGK, deoxyguanosine kin 94.9 0.014 4.8E-07 53.8 3.3 25 67-91 3-27 (241)
283 1vma_A Cell division protein F 94.8 0.017 5.7E-07 55.7 3.8 25 66-90 104-128 (306)
284 3b9q_A Chloroplast SRP recepto 94.8 0.017 5.9E-07 55.5 3.8 27 65-91 99-125 (302)
285 1xjc_A MOBB protein homolog; s 94.8 0.018 6.2E-07 50.3 3.6 24 67-90 5-28 (169)
286 3hdt_A Putative kinase; struct 94.8 0.018 6E-07 52.8 3.8 29 68-98 16-44 (223)
287 2px0_A Flagellar biosynthesis 94.8 0.016 5.5E-07 55.5 3.6 27 65-91 104-130 (296)
288 3tif_A Uncharacterized ABC tra 94.8 0.014 4.8E-07 53.9 3.0 39 64-102 29-67 (235)
289 2og2_A Putative signal recogni 94.8 0.046 1.6E-06 53.7 6.8 39 66-104 157-195 (359)
290 3v9p_A DTMP kinase, thymidylat 94.8 0.015 5.1E-07 53.4 3.1 26 66-91 25-50 (227)
291 1c9k_A COBU, adenosylcobinamid 94.8 0.016 5.6E-07 51.1 3.2 32 69-103 2-33 (180)
292 3bh0_A DNAB-like replicative h 94.7 0.026 8.8E-07 54.5 4.9 30 61-90 63-92 (315)
293 1a7j_A Phosphoribulokinase; tr 94.7 0.011 3.8E-07 56.4 2.3 24 68-91 7-30 (290)
294 1w4r_A Thymidine kinase; type 94.7 0.024 8.3E-07 50.6 4.3 35 66-100 20-55 (195)
295 3e70_C DPA, signal recognition 94.7 0.019 6.6E-07 55.7 3.9 27 65-91 128-154 (328)
296 2ewv_A Twitching motility prot 94.7 0.018 6.1E-07 57.0 3.7 28 64-91 134-161 (372)
297 2pcj_A ABC transporter, lipopr 94.7 0.014 4.9E-07 53.4 2.8 38 65-102 29-66 (224)
298 2v3c_C SRP54, signal recogniti 94.7 0.042 1.4E-06 55.5 6.4 25 66-90 99-123 (432)
299 1vt4_I APAF-1 related killer D 94.7 0.13 4.3E-06 57.4 10.5 42 43-88 131-172 (1221)
300 3tmk_A Thymidylate kinase; pho 94.7 0.02 6.8E-07 52.2 3.7 27 66-92 5-31 (216)
301 3kl4_A SRP54, signal recogniti 94.6 0.033 1.1E-06 56.1 5.5 25 66-90 97-121 (433)
302 1np6_A Molybdopterin-guanine d 94.6 0.024 8.2E-07 49.8 3.9 24 67-90 7-30 (174)
303 1b0u_A Histidine permease; ABC 94.6 0.017 5.9E-07 54.2 3.1 40 64-103 30-69 (262)
304 3cr8_A Sulfate adenylyltranfer 94.6 0.02 6.9E-07 59.6 3.8 28 64-91 367-394 (552)
305 4dra_A Centromere protein S; D 94.5 0.26 9E-06 39.4 9.4 75 373-454 33-107 (113)
306 1sgw_A Putative ABC transporte 94.5 0.017 5.9E-07 52.5 2.9 38 64-101 33-70 (214)
307 2hf9_A Probable hydrogenase ni 94.4 0.053 1.8E-06 49.0 6.0 25 67-91 39-63 (226)
308 3kta_A Chromosome segregation 94.4 0.023 7.7E-07 49.7 3.3 24 68-91 28-51 (182)
309 2ff7_A Alpha-hemolysin translo 94.4 0.019 6.4E-07 53.5 2.9 38 64-101 33-70 (247)
310 4hlc_A DTMP kinase, thymidylat 94.4 0.042 1.4E-06 49.5 5.1 32 68-99 4-35 (205)
311 2axn_A 6-phosphofructo-2-kinas 94.4 0.022 7.5E-07 59.0 3.7 25 67-91 36-60 (520)
312 1mv5_A LMRA, multidrug resista 94.4 0.02 6.7E-07 53.2 3.0 29 64-92 26-54 (243)
313 2onk_A Molybdate/tungstate ABC 94.3 0.021 7E-07 53.0 3.0 26 67-92 25-50 (240)
314 1lw7_A Transcriptional regulat 94.3 0.027 9.1E-07 55.5 4.0 27 66-92 170-196 (365)
315 4g1u_C Hemin import ATP-bindin 94.3 0.022 7.5E-07 53.6 3.2 40 64-103 35-74 (266)
316 2olj_A Amino acid ABC transpor 94.3 0.021 7.2E-07 53.7 3.1 38 64-101 48-85 (263)
317 1g6h_A High-affinity branched- 94.3 0.02 6.9E-07 53.6 3.0 38 64-101 31-68 (257)
318 4tmk_A Protein (thymidylate ki 94.3 0.026 9E-07 51.2 3.6 26 66-91 3-28 (213)
319 3b85_A Phosphate starvation-in 94.3 0.022 7.7E-07 51.5 3.1 24 66-89 22-45 (208)
320 2gk6_A Regulator of nonsense t 94.3 0.038 1.3E-06 58.6 5.3 24 67-90 196-219 (624)
321 2r6a_A DNAB helicase, replicat 94.2 0.036 1.2E-06 56.4 4.9 30 61-90 198-227 (454)
322 3gfo_A Cobalt import ATP-bindi 94.2 0.022 7.4E-07 53.9 3.0 40 64-103 32-71 (275)
323 2ixe_A Antigen peptide transpo 94.2 0.022 7.7E-07 53.7 3.1 40 63-102 42-81 (271)
324 2qm8_A GTPase/ATPase; G protei 94.2 0.044 1.5E-06 53.4 5.3 34 57-90 46-79 (337)
325 1p5z_B DCK, deoxycytidine kina 94.2 0.01 3.5E-07 55.6 0.6 26 66-91 24-49 (263)
326 2cbz_A Multidrug resistance-as 94.2 0.022 7.7E-07 52.6 3.0 28 64-91 29-56 (237)
327 2qi9_C Vitamin B12 import ATP- 94.2 0.021 7E-07 53.3 2.7 38 64-102 24-61 (249)
328 1nrj_B SR-beta, signal recogni 94.2 0.029 1E-06 50.4 3.7 25 66-90 12-36 (218)
329 1p9r_A General secretion pathw 94.2 0.03 1E-06 56.2 4.1 28 65-92 166-193 (418)
330 1ji0_A ABC transporter; ATP bi 94.2 0.022 7.7E-07 52.7 3.0 37 65-101 31-67 (240)
331 3ld9_A DTMP kinase, thymidylat 94.2 0.029 9.8E-07 51.4 3.6 26 66-91 21-46 (223)
332 2krk_A 26S protease regulatory 94.2 0.067 2.3E-06 41.0 5.2 74 364-438 7-80 (86)
333 2v6i_A RNA helicase; membrane, 94.2 0.17 5.7E-06 51.0 9.6 22 66-87 2-24 (431)
334 2ihy_A ABC transporter, ATP-bi 94.2 0.025 8.7E-07 53.6 3.3 39 64-102 45-83 (279)
335 1vpl_A ABC transporter, ATP-bi 94.1 0.025 8.6E-07 52.9 3.1 38 64-101 39-76 (256)
336 2f1r_A Molybdopterin-guanine d 94.1 0.02 6.8E-07 50.1 2.2 25 67-91 3-27 (171)
337 2dyk_A GTP-binding protein; GT 94.1 0.03 1E-06 47.3 3.3 23 67-89 2-24 (161)
338 3fvq_A Fe(3+) IONS import ATP- 94.0 0.027 9.3E-07 55.3 3.3 28 65-92 29-56 (359)
339 2pze_A Cystic fibrosis transme 94.0 0.027 9.2E-07 51.7 3.1 29 64-92 32-60 (229)
340 2yhs_A FTSY, cell division pro 94.0 0.033 1.1E-06 56.9 4.0 26 66-91 293-318 (503)
341 3sop_A Neuronal-specific septi 94.0 0.028 9.6E-07 53.0 3.3 24 68-91 4-27 (270)
342 2yyz_A Sugar ABC transporter, 93.9 0.032 1.1E-06 54.9 3.6 37 65-101 28-64 (359)
343 2it1_A 362AA long hypothetical 93.9 0.032 1.1E-06 54.9 3.6 37 65-101 28-64 (362)
344 2f9l_A RAB11B, member RAS onco 93.9 0.032 1.1E-06 49.5 3.3 24 67-90 6-29 (199)
345 1tf7_A KAIC; homohexamer, hexa 93.9 0.043 1.5E-06 56.9 4.7 42 62-103 35-78 (525)
346 2yz2_A Putative ABC transporte 93.9 0.029 9.8E-07 52.8 3.0 38 64-101 31-68 (266)
347 1z47_A CYSA, putative ABC-tran 93.9 0.032 1.1E-06 54.8 3.5 38 64-101 39-76 (355)
348 2q6t_A DNAB replication FORK h 93.9 0.045 1.5E-06 55.5 4.7 30 61-90 195-224 (444)
349 1zu4_A FTSY; GTPase, signal re 93.8 0.036 1.2E-06 53.7 3.7 25 66-90 105-129 (320)
350 1bif_A 6-phosphofructo-2-kinas 93.8 0.033 1.1E-06 56.9 3.7 25 67-91 40-64 (469)
351 1oix_A RAS-related protein RAB 93.8 0.03 1E-06 49.4 3.0 24 67-90 30-53 (191)
352 2d2e_A SUFC protein; ABC-ATPas 93.8 0.034 1.1E-06 51.8 3.4 25 65-89 28-52 (250)
353 3d31_A Sulfate/molybdate ABC t 93.8 0.029 1E-06 54.9 3.1 38 65-102 25-62 (348)
354 1v43_A Sugar-binding transport 93.8 0.035 1.2E-06 54.9 3.6 37 65-101 36-72 (372)
355 2zu0_C Probable ATP-dependent 93.8 0.036 1.2E-06 52.2 3.5 36 299-334 183-221 (267)
356 3rlf_A Maltose/maltodextrin im 93.8 0.036 1.2E-06 54.9 3.6 28 65-92 28-55 (381)
357 2ghi_A Transport protein; mult 93.7 0.03 1E-06 52.4 3.0 28 64-91 44-71 (260)
358 4a1f_A DNAB helicase, replicat 93.7 0.053 1.8E-06 52.8 4.7 30 61-90 41-70 (338)
359 1g29_1 MALK, maltose transport 93.7 0.035 1.2E-06 54.9 3.4 37 65-101 28-64 (372)
360 1z2a_A RAS-related protein RAB 93.7 0.038 1.3E-06 46.8 3.3 23 67-89 6-28 (168)
361 3vh5_A CENP-S; histone fold, c 93.7 0.5 1.7E-05 39.2 9.7 60 374-437 26-85 (140)
362 1m8p_A Sulfate adenylyltransfe 93.6 0.037 1.3E-06 58.0 3.6 34 67-100 397-432 (573)
363 1kao_A RAP2A; GTP-binding prot 93.6 0.041 1.4E-06 46.5 3.3 23 67-89 4-26 (167)
364 2obl_A ESCN; ATPase, hydrolase 93.5 0.079 2.7E-06 51.8 5.6 34 61-94 66-99 (347)
365 2ce2_X GTPase HRAS; signaling 93.5 0.04 1.4E-06 46.4 3.1 23 67-89 4-26 (166)
366 2dpy_A FLII, flagellum-specifi 93.5 0.086 2.9E-06 53.3 6.0 41 61-101 152-192 (438)
367 2wjy_A Regulator of nonsense t 93.4 0.064 2.2E-06 58.5 5.3 24 67-90 372-395 (800)
368 1u8z_A RAS-related protein RAL 93.4 0.045 1.5E-06 46.3 3.3 22 67-88 5-26 (168)
369 2nq2_C Hypothetical ABC transp 93.4 0.037 1.3E-06 51.7 2.9 28 64-91 29-56 (253)
370 1ek0_A Protein (GTP-binding pr 93.4 0.045 1.5E-06 46.4 3.3 23 67-89 4-26 (170)
371 3nh6_A ATP-binding cassette SU 93.4 0.032 1.1E-06 53.6 2.5 40 63-102 77-116 (306)
372 2wji_A Ferrous iron transport 93.4 0.043 1.5E-06 46.9 3.1 22 67-88 4-25 (165)
373 1oxx_K GLCV, glucose, ABC tran 93.3 0.031 1E-06 54.9 2.3 37 65-101 30-66 (353)
374 1z0j_A RAB-22, RAS-related pro 93.3 0.048 1.6E-06 46.3 3.3 23 67-89 7-29 (170)
375 2nzj_A GTP-binding protein REM 93.3 0.045 1.5E-06 46.8 3.2 22 67-88 5-26 (175)
376 3e2i_A Thymidine kinase; Zn-bi 93.3 0.24 8.2E-06 44.8 8.0 31 300-331 103-133 (219)
377 2zej_A Dardarin, leucine-rich 93.3 0.035 1.2E-06 48.5 2.5 21 68-88 4-24 (184)
378 4i1u_A Dephospho-COA kinase; s 93.3 0.054 1.9E-06 49.0 3.7 29 68-99 11-39 (210)
379 1h65_A Chloroplast outer envel 93.3 0.091 3.1E-06 49.2 5.4 41 48-88 21-61 (270)
380 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.05 1.7E-06 46.7 3.3 23 67-89 8-30 (177)
381 2pjz_A Hypothetical protein ST 93.2 0.041 1.4E-06 51.7 2.9 35 299-334 147-182 (263)
382 1q57_A DNA primase/helicase; d 93.2 0.097 3.3E-06 53.8 6.0 41 61-101 237-279 (503)
383 2p67_A LAO/AO transport system 93.2 0.082 2.8E-06 51.5 5.1 27 64-90 54-80 (341)
384 1g16_A RAS-related protein SEC 93.2 0.048 1.6E-06 46.3 3.1 22 67-88 4-25 (170)
385 3bgw_A DNAB-like replicative h 93.2 0.069 2.4E-06 54.1 4.7 30 61-90 192-221 (444)
386 1ky3_A GTP-binding protein YPT 93.2 0.052 1.8E-06 46.7 3.3 23 67-89 9-31 (182)
387 1z08_A RAS-related protein RAB 93.2 0.052 1.8E-06 46.1 3.3 23 67-89 7-29 (170)
388 3q85_A GTP-binding protein REM 93.1 0.051 1.7E-06 46.3 3.1 21 68-88 4-24 (169)
389 1r8s_A ADP-ribosylation factor 93.1 0.055 1.9E-06 45.8 3.3 22 68-89 2-23 (164)
390 2erx_A GTP-binding protein DI- 93.0 0.053 1.8E-06 46.1 3.2 22 67-88 4-25 (172)
391 1j8m_F SRP54, signal recogniti 93.0 0.083 2.8E-06 50.5 4.8 25 66-90 98-122 (297)
392 2gks_A Bifunctional SAT/APS ki 93.0 0.07 2.4E-06 55.5 4.6 26 66-91 372-397 (546)
393 2lkc_A Translation initiation 93.0 0.061 2.1E-06 46.2 3.5 23 66-88 8-30 (178)
394 1c1y_A RAS-related protein RAP 93.0 0.057 1.9E-06 45.7 3.3 22 67-88 4-25 (167)
395 1r2q_A RAS-related protein RAB 93.0 0.057 2E-06 45.8 3.3 22 67-88 7-28 (170)
396 2gj8_A MNME, tRNA modification 93.0 0.052 1.8E-06 46.9 3.0 24 66-89 4-27 (172)
397 1ls1_A Signal recognition part 93.0 0.064 2.2E-06 51.2 3.9 25 66-90 98-122 (295)
398 3q72_A GTP-binding protein RAD 92.9 0.049 1.7E-06 46.2 2.7 21 67-87 3-23 (166)
399 1tf7_A KAIC; homohexamer, hexa 92.9 0.055 1.9E-06 56.1 3.6 32 60-91 275-306 (525)
400 3bc1_A RAS-related protein RAB 92.9 0.058 2E-06 46.9 3.3 22 67-88 12-33 (195)
401 3tui_C Methionine import ATP-b 92.9 0.06 2.1E-06 52.9 3.6 41 64-104 52-92 (366)
402 2www_A Methylmalonic aciduria 92.9 0.16 5.5E-06 49.6 6.7 25 66-90 74-98 (349)
403 1upt_A ARL1, ADP-ribosylation 92.8 0.072 2.5E-06 45.3 3.7 23 66-88 7-29 (171)
404 2wjg_A FEOB, ferrous iron tran 92.8 0.058 2E-06 46.9 3.1 22 67-88 8-29 (188)
405 3def_A T7I23.11 protein; chlor 92.8 0.12 4.1E-06 48.1 5.5 41 48-88 18-58 (262)
406 3aji_B S6C, proteasome (prosom 92.8 0.13 4.5E-06 38.8 4.7 70 368-438 1-70 (83)
407 2j37_W Signal recognition part 92.8 0.084 2.9E-06 54.3 4.7 34 66-99 101-137 (504)
408 4dsu_A GTPase KRAS, isoform 2B 92.7 0.064 2.2E-06 46.5 3.3 23 67-89 5-27 (189)
409 2hxs_A RAB-26, RAS-related pro 92.7 0.061 2.1E-06 46.2 3.2 22 67-88 7-28 (178)
410 3hjn_A DTMP kinase, thymidylat 92.7 0.065 2.2E-06 47.9 3.3 22 69-90 3-24 (197)
411 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.07 2.4E-06 45.3 3.4 23 68-90 25-47 (149)
412 2y8e_A RAB-protein 6, GH09086P 92.7 0.062 2.1E-06 46.0 3.1 22 67-88 15-36 (179)
413 1m7b_A RND3/RHOE small GTP-bin 92.7 0.062 2.1E-06 46.8 3.1 23 67-89 8-30 (184)
414 2bbs_A Cystic fibrosis transme 92.7 0.053 1.8E-06 51.7 2.8 27 65-91 63-89 (290)
415 3gd7_A Fusion complex of cysti 92.6 0.06 2.1E-06 53.5 3.3 27 64-90 45-71 (390)
416 3con_A GTPase NRAS; structural 92.6 0.066 2.3E-06 46.7 3.3 23 67-89 22-44 (190)
417 1z0f_A RAB14, member RAS oncog 92.6 0.067 2.3E-06 45.8 3.3 23 67-89 16-38 (179)
418 3tw8_B RAS-related protein RAB 92.6 0.06 2.1E-06 46.2 2.9 22 67-88 10-31 (181)
419 2fn4_A P23, RAS-related protei 92.6 0.065 2.2E-06 46.0 3.1 23 67-89 10-32 (181)
420 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.055 1.9E-06 55.1 3.0 29 62-90 134-162 (460)
421 3b0b_B CENP-S, centromere prot 92.6 0.83 2.8E-05 36.3 9.1 59 375-437 27-85 (107)
422 1ko7_A HPR kinase/phosphatase; 92.5 0.11 3.8E-06 49.9 4.9 24 66-89 144-167 (314)
423 2oil_A CATX-8, RAS-related pro 92.5 0.07 2.4E-06 46.7 3.3 23 67-89 26-48 (193)
424 2a9k_A RAS-related protein RAL 92.5 0.072 2.5E-06 46.0 3.3 22 67-88 19-40 (187)
425 3clv_A RAB5 protein, putative; 92.5 0.072 2.5E-06 46.6 3.3 23 67-89 8-30 (208)
426 2efe_B Small GTP-binding prote 92.5 0.073 2.5E-06 45.8 3.3 23 67-89 13-35 (181)
427 2bme_A RAB4A, RAS-related prot 92.4 0.069 2.4E-06 46.3 3.1 23 67-89 11-33 (186)
428 1tq4_A IIGP1, interferon-induc 92.4 0.11 3.7E-06 52.1 4.9 25 67-91 70-94 (413)
429 3vlf_B 26S protease regulatory 92.4 0.25 8.4E-06 37.9 5.9 71 369-440 2-72 (88)
430 1knx_A Probable HPR(Ser) kinas 92.4 0.056 1.9E-06 51.9 2.6 23 66-88 147-169 (312)
431 3kkq_A RAS-related protein M-R 92.4 0.076 2.6E-06 45.9 3.3 24 66-89 18-41 (183)
432 2g6b_A RAS-related protein RAB 92.3 0.077 2.6E-06 45.6 3.3 23 67-89 11-33 (180)
433 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.078 2.7E-06 45.8 3.3 22 67-88 6-27 (186)
434 2vp4_A Deoxynucleoside kinase; 92.3 0.044 1.5E-06 50.1 1.7 24 66-89 20-43 (230)
435 3v9r_A MHF1, uncharacterized p 92.3 0.34 1.2E-05 37.2 6.4 51 383-437 28-78 (90)
436 1m2o_B GTP-binding protein SAR 92.3 0.074 2.5E-06 46.7 3.1 22 67-88 24-45 (190)
437 1taf_B TFIID TBP associated fa 92.2 0.46 1.6E-05 34.7 6.7 56 378-437 13-69 (70)
438 2cxx_A Probable GTP-binding pr 92.2 0.066 2.3E-06 46.5 2.7 21 68-88 3-23 (190)
439 1svi_A GTP-binding protein YSX 92.2 0.074 2.5E-06 46.5 2.9 22 67-88 24-45 (195)
440 3k53_A Ferrous iron transport 92.1 0.077 2.6E-06 49.7 3.2 22 67-88 4-25 (271)
441 2rcn_A Probable GTPase ENGC; Y 92.1 0.082 2.8E-06 51.8 3.5 26 66-91 215-240 (358)
442 2gf9_A RAS-related protein RAB 92.1 0.085 2.9E-06 46.0 3.3 23 67-89 23-45 (189)
443 3ihw_A Centg3; RAS, centaurin, 92.1 0.087 3E-06 46.0 3.3 23 67-89 21-43 (184)
444 1pui_A ENGB, probable GTP-bind 92.1 0.046 1.6E-06 48.6 1.5 24 65-88 25-48 (210)
445 2bov_A RAla, RAS-related prote 92.1 0.086 2.9E-06 46.5 3.3 23 67-89 15-37 (206)
446 2ffh_A Protein (FFH); SRP54, s 92.0 0.11 3.6E-06 52.3 4.2 27 65-91 97-123 (425)
447 2xxa_A Signal recognition part 92.0 0.089 3E-06 53.1 3.7 25 66-90 100-124 (433)
448 3bwd_D RAC-like GTP-binding pr 92.0 0.089 3E-06 45.3 3.3 22 67-88 9-30 (182)
449 3c5c_A RAS-like protein 12; GD 92.0 0.09 3.1E-06 46.0 3.3 23 67-89 22-44 (187)
450 3t1o_A Gliding protein MGLA; G 92.0 0.088 3E-06 45.9 3.3 24 67-90 15-38 (198)
451 2atv_A RERG, RAS-like estrogen 92.0 0.089 3.1E-06 46.2 3.3 24 66-89 28-51 (196)
452 3tkl_A RAS-related protein RAB 92.0 0.088 3E-06 46.0 3.3 23 67-89 17-39 (196)
453 3t5g_A GTP-binding protein RHE 92.0 0.086 2.9E-06 45.5 3.1 22 67-88 7-28 (181)
454 3ug7_A Arsenical pump-driving 92.0 0.15 5E-06 49.9 5.1 38 64-101 24-64 (349)
455 2iwr_A Centaurin gamma 1; ANK 92.0 0.067 2.3E-06 46.0 2.4 23 67-89 8-30 (178)
456 1vg8_A RAS-related protein RAB 92.0 0.091 3.1E-06 46.4 3.3 23 67-89 9-31 (207)
457 3b0b_C CENP-X, centromere prot 91.9 0.56 1.9E-05 35.3 7.1 67 368-438 9-75 (81)
458 1fzq_A ADP-ribosylation factor 91.9 0.083 2.8E-06 45.9 3.0 23 66-88 16-38 (181)
459 2fg5_A RAB-22B, RAS-related pr 91.9 0.088 3E-06 46.2 3.1 23 67-89 24-46 (192)
460 2xzl_A ATP-dependent helicase 91.9 0.09 3.1E-06 57.3 3.7 24 67-90 376-399 (802)
461 1z06_A RAS-related protein RAB 91.9 0.096 3.3E-06 45.7 3.3 22 67-88 21-42 (189)
462 1zd9_A ADP-ribosylation factor 91.9 0.094 3.2E-06 45.8 3.3 22 67-88 23-44 (188)
463 2fh5_B SR-beta, signal recogni 91.9 0.095 3.3E-06 46.7 3.4 23 67-89 8-30 (214)
464 3dz8_A RAS-related protein RAB 91.8 0.089 3E-06 46.0 3.1 24 67-90 24-47 (191)
465 1x3s_A RAS-related protein RAB 91.8 0.095 3.2E-06 45.7 3.3 23 67-89 16-38 (195)
466 2a5j_A RAS-related protein RAB 91.8 0.095 3.3E-06 45.8 3.3 22 67-88 22-43 (191)
467 3b5x_A Lipid A export ATP-bind 91.8 0.11 3.7E-06 54.6 4.2 43 59-101 362-404 (582)
468 3reg_A RHO-like small GTPase; 91.8 0.096 3.3E-06 45.9 3.3 23 67-89 24-46 (194)
469 1zj6_A ADP-ribosylation factor 91.8 0.16 5.5E-06 44.1 4.7 22 67-88 17-38 (187)
470 1zbd_A Rabphilin-3A; G protein 91.7 0.092 3.1E-06 46.3 3.1 22 67-88 9-30 (203)
471 4ag6_A VIRB4 ATPase, type IV s 91.7 0.11 3.7E-06 51.5 4.0 84 299-400 263-360 (392)
472 2bcg_Y Protein YP2, GTP-bindin 91.7 0.092 3.1E-06 46.5 3.1 22 67-88 9-30 (206)
473 2p5s_A RAS and EF-hand domain 91.7 0.1 3.4E-06 46.1 3.3 22 67-88 29-50 (199)
474 3pqc_A Probable GTP-binding pr 91.7 0.085 2.9E-06 45.9 2.8 22 67-88 24-45 (195)
475 2r62_A Cell division protease 91.6 0.054 1.9E-06 50.4 1.5 69 193-266 152-229 (268)
476 3oes_A GTPase rhebl1; small GT 91.6 0.096 3.3E-06 46.3 3.1 23 67-89 25-47 (201)
477 2gf0_A GTP-binding protein DI- 91.6 0.1 3.4E-06 45.8 3.1 22 67-88 9-30 (199)
478 1ksh_A ARF-like protein 2; sma 91.6 0.093 3.2E-06 45.5 2.9 23 66-88 18-40 (186)
479 1qhl_A Protein (cell division 91.6 0.04 1.4E-06 50.5 0.5 25 69-93 30-54 (227)
480 3ice_A Transcription terminati 91.5 0.11 3.9E-06 51.2 3.7 28 64-91 172-199 (422)
481 1gwn_A RHO-related GTP-binding 91.5 0.1 3.4E-06 46.6 3.1 23 67-89 29-51 (205)
482 2yv5_A YJEQ protein; hydrolase 91.5 0.1 3.5E-06 49.9 3.3 25 66-91 165-189 (302)
483 1yrb_A ATP(GTP)binding protein 91.5 0.12 4E-06 47.9 3.6 25 67-91 15-39 (262)
484 2ew1_A RAS-related protein RAB 91.5 0.1 3.5E-06 46.5 3.1 23 67-89 27-49 (201)
485 1moz_A ARL1, ADP-ribosylation 91.5 0.073 2.5E-06 46.0 2.1 22 66-87 18-39 (183)
486 2qag_B Septin-6, protein NEDD5 91.5 0.12 4.2E-06 51.8 4.0 21 69-89 45-65 (427)
487 3cph_A RAS-related protein SEC 91.4 0.11 3.8E-06 46.1 3.3 22 67-88 21-42 (213)
488 3thx_A DNA mismatch repair pro 91.4 0.4 1.4E-05 53.0 8.2 23 66-88 662-684 (934)
489 2fu5_C RAS-related protein RAB 91.3 0.07 2.4E-06 46.1 1.8 22 67-88 9-30 (183)
490 3thx_B DNA mismatch repair pro 91.3 0.33 1.1E-05 53.5 7.5 23 66-88 673-695 (918)
491 3qks_A DNA double-strand break 91.2 0.12 4.2E-06 46.2 3.4 25 67-91 24-48 (203)
492 3b60_A Lipid A export ATP-bind 91.2 0.1 3.5E-06 54.8 3.2 40 63-102 366-405 (582)
493 2wkq_A NPH1-1, RAS-related C3 91.2 0.24 8.2E-06 47.3 5.6 23 66-88 155-177 (332)
494 4dra_E Centromere protein X; D 91.1 0.6 2.1E-05 35.3 6.5 67 368-438 13-79 (84)
495 2atx_A Small GTP binding prote 91.1 0.12 4E-06 45.2 3.1 23 67-89 19-41 (194)
496 3lxx_A GTPase IMAP family memb 91.1 0.12 3.9E-06 47.4 3.2 22 67-88 30-51 (239)
497 1f6b_A SAR1; gtpases, N-termin 91.1 0.093 3.2E-06 46.5 2.4 21 67-87 26-46 (198)
498 2fv8_A H6, RHO-related GTP-bin 91.1 0.12 4.1E-06 45.9 3.1 22 67-88 26-47 (207)
499 2o52_A RAS-related protein RAB 91.0 0.11 3.8E-06 45.9 2.9 22 67-88 26-47 (200)
500 2cjw_A GTP-binding protein GEM 91.0 0.12 4.1E-06 45.5 3.1 23 67-89 7-29 (192)
No 1
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=100.00 E-value=2.2e-66 Score=537.59 Aligned_cols=454 Identities=75% Similarity=1.152 Sum_probs=377.9
Q ss_pred chhhhhhhhHHHHHHhhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHH
Q 012719 4 MKIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALA 83 (458)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA 83 (458)
|+++|++++.+++|.++||||+|+|+.+...|...|++++||+++++.+..+++.+..+..+++++||+||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~s~i~~~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp --------CHHHHHHHTTTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred CCcccccccccccchhhhhcccCCCCCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHh
Q 012719 84 LGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIG 163 (458)
Q Consensus 84 ~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~ 163 (458)
+++|++++.+++|+.++++++.+.++++++.+.+.|+.|.+.....||++|+||+|++++++.....+++++.....+..
T Consensus 81 ~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~ 160 (456)
T 2c9o_A 81 LAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIG 160 (456)
T ss_dssp HHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEE
T ss_pred HHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHH
Confidence 99999999888999999999999999999999999999976666789999999999999998876555566666677777
Q ss_pred hccccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH
Q 012719 164 LKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL 243 (458)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l 243 (458)
|.+.++...+++...+++.+....+..+++++|.++||.+..++++..+.+|||..+..++|.|.++...|.++++.++.
T Consensus 161 l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~ 240 (456)
T 2c9o_A 161 LKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240 (456)
T ss_dssp EEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH
T ss_pred HhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH
Confidence 88889999999999999999988888999999999999999999999999999999899999999988889999999999
Q ss_pred hhHHHHhcCCCChhhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhh
Q 012719 244 HDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALE 323 (458)
Q Consensus 244 ~~l~~~~~~~~g~adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE 323 (458)
++++.++..++|++|+.+++..+..+....+..++++.+++.+.+|..++..+..++|+||||+|+|+++++|+|+++||
T Consensus 241 ~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lE 320 (456)
T 2c9o_A 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALE 320 (456)
T ss_dssp HHHHHTC-----------------------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhh
Confidence 99999999999999999999887777777888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEecCCccccccCCC-CCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhc
Q 012719 324 SSLSPIVIFATNRGICNIRGTD-MNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARD 402 (458)
Q Consensus 324 ~~~~~i~il~tn~~~~~~~~~~-~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~ 402 (458)
+++.+++|++||++.+.+.+.+ ...+..++|+++|||+.+.|++|+.+++.++|+.+++.+++.++++++.+|+.++.+
T Consensus 321 e~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~ 400 (456)
T 2c9o_A 321 SSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTK 400 (456)
T ss_dssp STTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccC
Confidence 9999988889999888888764 667999999999999999999999999999999999999999999999999999867
Q ss_pred CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHHHHHHHHHHhhc
Q 012719 403 TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYI 457 (458)
Q Consensus 403 g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
|++|.|+.+++.|..+|...|+..||.+||+.++++|+|..+|+++++.|+.+|+
T Consensus 401 g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~ 455 (456)
T 2c9o_A 401 TTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455 (456)
T ss_dssp SCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999986
No 2
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=100.00 E-value=1.1e-40 Score=335.38 Aligned_cols=341 Identities=47% Similarity=0.783 Sum_probs=262.2
Q ss_pred cchhhhhhhhHHHHHHhhhcccCCCCCccCCCCCCccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHH
Q 012719 3 KMKIEEVQSTAKKQRVAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTAL 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~l 82 (458)
.|++++++++.+++|.+.|||++++++.+..+|..+|++++|+++++.++..+...+..+..+++++||+||||||||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 7 TTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp -----------------CCTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHH
T ss_pred eeeehhccccchhhccchhhhhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHH
Q 012719 83 ALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVII 162 (458)
Q Consensus 83 A~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~ 162 (458)
|+++|+.+++..|++.+++..+.+.+.+..+.+.+.|+.+.+....+
T Consensus 87 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 133 (368)
T 3uk6_A 87 AMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKA--------------------------------- 133 (368)
T ss_dssp HHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC-----------------------------------
T ss_pred HHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhh---------------------------------
Confidence 99999999988899999999999999998888777777544321100
Q ss_pred hhccccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC
Q 012719 163 GLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT 242 (458)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~ 242 (458)
++.+.++
T Consensus 134 -------------------------------------------------------------------------~~~~~~~ 140 (368)
T 3uk6_A 134 -------------------------------------------------------------------------GAVHTVS 140 (368)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -------------------------------------------------------------------------hcccccc
Confidence 1111223
Q ss_pred HhhHHHHhcCCCChhhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHh
Q 012719 243 LHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRAL 322 (458)
Q Consensus 243 l~~l~~~~~~~~g~adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~l 322 (458)
+++++..+..+.|+ ..++.+..+++..++++.+......+...+.....++||||||++.|+++.++.|++.+
T Consensus 141 ~~~ld~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~l 213 (368)
T 3uk6_A 141 LHEIDVINSRTQGF-------LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRAL 213 (368)
T ss_dssp HHHHHHHTC----C-------CSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHT
T ss_pred Hhhhhhhhcccccc-------hhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHh
Confidence 33444444433331 12223333556677888888888888888887667789999999999999999999999
Q ss_pred hccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhc
Q 012719 323 ESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARD 402 (458)
Q Consensus 323 E~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~ 402 (458)
|+++.+++++++++....+...+.+.+..++++++|||..+.|++|+.+++.++++.++...++.+++++++.|++.+ .
T Consensus 214 e~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~-~ 292 (368)
T 3uk6_A 214 ESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIG-L 292 (368)
T ss_dssp TCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-H
T ss_pred hCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-c
Confidence 999999888899887666666666678899999999999999999999999999999999999999999999999999 6
Q ss_pred -CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHHHHHHHHHHhhc
Q 012719 403 -TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQQEKYI 457 (458)
Q Consensus 403 -g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
|++|.+.++++.+...|...+...||.++|+.++..|++..++.+++.+++++|+
T Consensus 293 ~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 348 (368)
T 3uk6_A 293 ETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFL 348 (368)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHHC-------
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Confidence 9999999999999999988899899999999999999999999999999999886
No 3
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=5.4e-32 Score=292.68 Aligned_cols=346 Identities=20% Similarity=0.272 Sum_probs=230.7
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 32 NGNAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 32 ~~~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
...|..+|+||.|++++++.+++++.+. ..+..+++++|||||||||||++|+++|++++ .+|+.+++++
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~~~v~~~~ 273 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPE 273 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEEEEEEHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeEEEEEhHH
Confidence 3346788999999999999999888652 22556789999999999999999999999999 7899999999
Q ss_pred ccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHH
Q 012719 104 VYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDA 182 (458)
Q Consensus 104 ~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 182 (458)
+.+.|.|+++ .++++|..|.. ++||||||||+|++++++.+...+...+.+.+++.. ++.
T Consensus 274 l~sk~~gese~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~----------------mdg 334 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL----------------MDG 334 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTH----------------HHH
T ss_pred hhcccchHHHHHHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHH----------------Hhc
Confidence 9999999998 69999999976 569999999999999998776544445566666544 444
Q ss_pred HhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHh-------hHHHHhcCCCC
Q 012719 183 LIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLH-------DLDAANARPQG 255 (458)
Q Consensus 183 ~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~-------~l~~~~~~~~g 255 (458)
+. .. ..++|.++||.+..++.+.++.+|||.. +.++.| +...|.+|++..+.. +++.++..|+|
T Consensus 335 ~~----~~-~~V~VIaaTN~~d~LD~ALrR~GRFd~~--I~i~~P--d~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 335 LK----QR-AHVIVMAATNRPNSIDPALRRFGRFDRE--VDIGIP--DATGRLEILQIHTKNMKLADDVDLEQVANETHG 405 (806)
T ss_dssp CC----GG-GCEEEEEECSSTTTSCTTTTSTTSSCEE--EECCCC--CHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCS
T ss_pred cc----cc-CCEEEEEecCChhhcCHHHhCCcccceE--EecCCC--CHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCC
Confidence 43 12 2355667777888888888888899774 455555 566799988765522 78899999999
Q ss_pred h--hhHHHHHHhhccch--h-------------HHH----------------------------------------hHHH
Q 012719 256 G--QDILSLMGQMMKPR--K-------------TEI----------------------------------------TDKL 278 (458)
Q Consensus 256 ~--adl~~l~~~~~~~~--~-------------~~i----------------------------------------~~~~ 278 (458)
| +|+..++....-.. + .+. ..+.
T Consensus 406 fsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~ 485 (806)
T 3cf2_A 406 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHH
Confidence 8 99988875431100 0 000 0112
Q ss_pred HHHHH-------------------------------------------------------HHHHHHHhhcc---------
Q 012719 279 RQEIN-------------------------------------------------------KVVNRFIDEGA--------- 294 (458)
Q Consensus 279 ~~~i~-------------------------------------------------------~~~~~~~~~~~--------- 294 (458)
++++. ..+.+|+.+..
T Consensus 486 k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~ 565 (806)
T 3cf2_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHH
Confidence 22221 12223322211
Q ss_pred -ccccceEEEEcccchhcH--------------HHHHHHHHHhhccCC--CeEEE-ecCCccccccCCCCCCCCCCChhH
Q 012719 295 -AELVPGVLFIDEVHMLDM--------------ECFSYLNRALESSLS--PIVIF-ATNRGICNIRGTDMNSPHGIPLDL 356 (458)
Q Consensus 295 -~~~~~~Vl~IDE~~~l~~--------------~~~~~Ll~~lE~~~~--~i~il-~tn~~~~~~~~~~~~~~~~l~~~l 356 (458)
....+.|+||||++.+-. ...+.||..|+.... .++++ +| |.|..|++++
T Consensus 566 Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT------------N~p~~lD~Al 633 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT------------NRPDIIDPAI 633 (806)
T ss_dssp HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-------------CCSSSSCHHH
T ss_pred HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeC------------CCchhCCHhH
Confidence 123467999999999832 257889999996543 45554 55 7789999999
Q ss_pred hh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 357 LD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 357 ~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
++ ||... +++.++.++..+|++...++..+. ++--++.|++.+...+.....++++.|...|.
T Consensus 634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp HSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 97 99655 999999999999998776654433 12236777777734456666666766665554
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.3e-28 Score=241.23 Aligned_cols=233 Identities=19% Similarity=0.179 Sum_probs=186.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|+.+|+||.|++++++.+++.+.+. +.|..+++++|||||||||||++|+++|.+++ .+|+.++++++.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~ 219 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CKFIRVSGAELV 219 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CEEEEEEGGGGS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CCceEEEhHHhh
Confidence 37789999999999999999888642 44777889999999999999999999999999 789999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
++|+|+++ .++++|..|.. .+||+|||||+|+++++|.....++. ...
T Consensus 220 sk~vGese~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~-~~~--------------------------- 268 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGD-SEV--------------------------- 268 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGG-GHH---------------------------
T ss_pred ccccchHHHHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCc-HHH---------------------------
Confidence 99999999 69999999987 45999999999999988765321110 000
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 269 -------------------------------------------------------------------------------- 268 (405)
T 4b4t_J 269 -------------------------------------------------------------------------------- 268 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~ 341 (458)
....+.||..|+.. ... ++|.+|
T Consensus 269 -----------------------------------------------~~~l~~lL~~lDg~~~~~~V~vIaAT------- 294 (405)
T 4b4t_J 269 -----------------------------------------------QRTMLELLNQLDGFETSKNIKIIMAT------- 294 (405)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHTTTCCCCEEEEEEE-------
T ss_pred -----------------------------------------------HHHHHHHHHhhhccCCCCCeEEEecc-------
Confidence 01233445555432 223 566677
Q ss_pred cCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVV 418 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~ 418 (458)
|.|..|+|+|++ ||... .|+.++.++..+|++..+++.++.- +--++.|++.+...+.+....++..|...
T Consensus 295 -----Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~-dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 295 -----NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR-GINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp -----SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS-SCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred -----CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc-cCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 778999999987 89654 9999999999999998877655431 12378899988456889999999999999
Q ss_pred HhhhCCCCccHHHHHHHHHhh
Q 012719 419 AKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 419 a~~~~~~~it~~~v~~~~~~~ 439 (458)
|...++..||.+|+..|+.-.
T Consensus 369 Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 369 ALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHH
Confidence 988888899999999998744
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-27 Score=235.96 Aligned_cols=230 Identities=21% Similarity=0.225 Sum_probs=184.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|+.+|+||.|++++++.+.+.+.+. ..|..+++++|||||||||||++|+++|.+++ .+|+.++++++.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~fi~v~~s~l~ 253 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSELI 253 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEEEEEESGGGC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCEEEEEHHHhh
Confidence 57789999999999999998888642 45677789999999999999999999999999 789999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
++|+|+++ .++.+|..|.. .+|||||+||+|+++++|......+... .
T Consensus 254 sk~vGesek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~-~--------------------------- 302 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGERE-I--------------------------- 302 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCH-H---------------------------
T ss_pred hccCchHHHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHH-H---------------------------
Confidence 99999999 69999999987 4599999999999999886542111000 0
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 303 -------------------------------------------------------------------------------- 302 (437)
T 4b4t_I 303 -------------------------------------------------------------------------------- 302 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~ 341 (458)
...++.||..|+.. ... ++|.+|
T Consensus 303 -----------------------------------------------~~~l~~LL~~lDg~~~~~~ViVIaAT------- 328 (437)
T 4b4t_I 303 -----------------------------------------------QRTMLELLNQLDGFDDRGDVKVIMAT------- 328 (437)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHCCCSSSEEEEEEE-------
T ss_pred -----------------------------------------------HHHHHHHHHHhhCcCCCCCEEEEEeC-------
Confidence 01223344444432 223 567777
Q ss_pred cCCCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHhhcCCHHHHHHhhHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEE-SLAHLGEIARDTSLRHAVQLLYPASV 417 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~-~l~~i~~~~~~g~~r~a~~ll~~a~~ 417 (458)
|.|..|+|+|++ ||.. +.|+.++.++..+|++..+++..+. ++ -++.|++.+...+.+...+++..|..
T Consensus 329 -----Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~--~dvdl~~LA~~T~GfSGADI~~l~~eA~~ 401 (437)
T 4b4t_I 329 -----NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS--EDVNLETLVTTKDDLSGADIQAMCTEAGL 401 (437)
T ss_dssp -----SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC--SCCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred -----CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC--CcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 778999999987 8865 4999999999999999888765543 32 37888988855688999999999999
Q ss_pred HHhhhCCCCccHHHHHHHHH
Q 012719 418 VAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 418 ~a~~~~~~~it~~~v~~~~~ 437 (458)
.|...++..||.+|+..|+.
T Consensus 402 ~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 402 LALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHcCCCccCHHHHHHHHH
Confidence 99888888999999999987
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.8e-27 Score=238.30 Aligned_cols=233 Identities=19% Similarity=0.200 Sum_probs=185.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHH--------HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDM--------IRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~--------~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|+.+|+||.|++++++.|.+.+.+ .+.|..+++++|||||||||||++|+++|.+++ .+|+.++++++.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~fi~vs~s~L~ 280 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATFIRVIGSELV 280 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCeEEEEhHHhh
Confidence 4778999999999999999887753 244677889999999999999999999999999 789999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
++|+|+++ .++.+|..|.. .+|||||+||+|+++++|.....+.... .
T Consensus 281 sk~vGesek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~-~--------------------------- 329 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNE-V--------------------------- 329 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGH-H---------------------------
T ss_pred cccCCHHHHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHH-H---------------------------
Confidence 99999998 69999999987 4599999999999998886542111000 0
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 330 -------------------------------------------------------------------------------- 329 (467)
T 4b4t_H 330 -------------------------------------------------------------------------------- 329 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~ 341 (458)
...++.||..|+.. ... ++|.+|
T Consensus 330 -----------------------------------------------~~~l~~lL~~lDg~~~~~~ViVIaAT------- 355 (467)
T 4b4t_H 330 -----------------------------------------------QRTMLELITQLDGFDPRGNIKVMFAT------- 355 (467)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHSSCCTTTEEEEEEC-------
T ss_pred -----------------------------------------------HHHHHHHHHHhhccCCCCcEEEEeCC-------
Confidence 01223344444432 223 566677
Q ss_pred cCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVV 418 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~ 418 (458)
|.|..|.|+|++ ||... .|+.++.++..+||+..+++..+.-+ --++.|++.+...+.+....++..|...
T Consensus 356 -----Nrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d-vdl~~LA~~T~GfSGADI~~l~~eAa~~ 429 (467)
T 4b4t_H 356 -----NRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG-IRWELISRLCPNSTGAELRSVCTEAGMF 429 (467)
T ss_dssp -----SCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS-CCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred -----CCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 778999999986 99655 99999999999999988876554321 1267888888455888999999999999
Q ss_pred HhhhCCCCccHHHHHHHHHhh
Q 012719 419 AKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 419 a~~~~~~~it~~~v~~~~~~~ 439 (458)
|...++..||.+|+..|+.-.
T Consensus 430 Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 430 AIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHcCCCccCHHHHHHHHHHH
Confidence 988899999999999998743
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.9e-27 Score=238.17 Aligned_cols=240 Identities=19% Similarity=0.201 Sum_probs=188.6
Q ss_pred cccCCCCCccCCCCCCccccccchHHHHHHHHHHHHH--------HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 22 THIKGLGLEANGNAVPLAAGFVGQVEAREAAGLVVDM--------IRQKKMAGRALLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~l~~~--------~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
+.++....++ .|..+|+||+|++++++.+...+.+ .+.|..+++++|||||||||||++|+++|.+++
T Consensus 165 ~~~~~~~~~~--~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~-- 240 (434)
T 4b4t_M 165 SRVKAMEVDE--KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN-- 240 (434)
T ss_dssp CSCSCCEEES--SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--
T ss_pred chhhhcccCC--CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--
Confidence 3444433333 5778999999999999999876643 245777889999999999999999999999999
Q ss_pred ccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhcccccccc
Q 012719 94 VPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQ 172 (458)
Q Consensus 94 ~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 172 (458)
.||+.++++++.++|+|+++ .++.+|..|.. .+|||||+||+|+++++|......+.. .+
T Consensus 241 ~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~-~~--------------- 301 (434)
T 4b4t_M 241 ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDR-EV--------------- 301 (434)
T ss_dssp CEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTH-HH---------------
T ss_pred CCEEEEehhhhhhcccchHHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCch-HH---------------
Confidence 78999999999999999998 69999999987 459999999999999887643211100 00
Q ss_pred ccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcC
Q 012719 173 LKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANAR 252 (458)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~ 252 (458)
T Consensus 302 -------------------------------------------------------------------------------- 301 (434)
T 4b4t_M 302 -------------------------------------------------------------------------------- 301 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhhHHHHHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCC--C-e
Q 012719 253 PQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLS--P-I 329 (458)
Q Consensus 253 ~~g~adl~~l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~--~-i 329 (458)
....+.||..|+.... . +
T Consensus 302 -----------------------------------------------------------~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 302 -----------------------------------------------------------QRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHTTSCSSCSSE
T ss_pred -----------------------------------------------------------HHHHHHHHHHhhccCCCCCEE
Confidence 0123445555554322 3 5
Q ss_pred EEEecCCccccccCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHhhcCCH
Q 012719 330 VIFATNRGICNIRGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEE-SLAHLGEIARDTSL 405 (458)
Q Consensus 330 ~il~tn~~~~~~~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~-~l~~i~~~~~~g~~ 405 (458)
+|.+| |.|..|+|+|++ ||... .|+.|+.++..+|++..+++..+. ++ -++.|++.+...+.
T Consensus 323 VIaaT------------Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~--~dvdl~~lA~~t~G~sG 388 (434)
T 4b4t_M 323 VLAAT------------NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD--DDINWQELARSTDEFNG 388 (434)
T ss_dssp EEEEC------------SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC--SCCCHHHHHHHCSSCCH
T ss_pred EEEeC------------CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC--CcCCHHHHHHhCCCCCH
Confidence 66677 778999999987 89655 999999999999999888776543 22 27888988845588
Q ss_pred HHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 406 RHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 406 r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+...+++..|...|...++..||.+|+..|+.
T Consensus 389 ADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 389 AQLKAVTVEAGMIALRNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 99999999999999888999999999999887
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-26 Score=233.65 Aligned_cols=232 Identities=21% Similarity=0.206 Sum_probs=185.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|+.+|+||+|++++++.+...+.+. ..|..+++++|||||||||||++|+++|.+++ .+|+.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~~~~v~~s~l~ 252 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--ANFIFSPASGIV 252 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGTC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehhhhc
Confidence 57789999999999999998888642 44677889999999999999999999999999 789999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
++|+|+++ .++.+|..|.. ..|||||+||+|+++++|........ +.+
T Consensus 253 sk~~Gese~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~-~~~--------------------------- 301 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSAD-REI--------------------------- 301 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSST-THH---------------------------
T ss_pred cccchHHHHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcc-hHH---------------------------
Confidence 99999998 69999999987 55999999999999988865321110 000
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 302 -------------------------------------------------------------------------------- 301 (437)
T 4b4t_L 302 -------------------------------------------------------------------------------- 301 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccCC--C-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLS--P-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~--~-i~il~tn~~~~~~ 341 (458)
....+.||..|+.... . ++|.+|
T Consensus 302 -----------------------------------------------~~~l~~lL~~lDg~~~~~~vivI~AT------- 327 (437)
T 4b4t_L 302 -----------------------------------------------QRTLMELLTQMDGFDNLGQTKIIMAT------- 327 (437)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHSSSCTTSSEEEEEE-------
T ss_pred -----------------------------------------------HHHHHHHHHHhhcccCCCCeEEEEec-------
Confidence 0123445555554322 2 677788
Q ss_pred cCCCCCCCCCCChhHhhh--hcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLDR--LVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVV 418 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~sR--~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~ 418 (458)
|.|..|+|+|++| |.. +.|+.++.++..+|++..+.+....- +--++.|++.+...+.+...+++..|...
T Consensus 328 -----Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d~dl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (437)
T 4b4t_L 328 -----NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG-EFDFEAAVKMSDGFNGADIRNCATEAGFF 401 (437)
T ss_dssp -----SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS-CCCHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred -----CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc-ccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 6788999999864 754 49999999999999998887655432 22378888888445888999999999999
Q ss_pred HhhhCCCCccHHHHHHHHHh
Q 012719 419 AKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 419 a~~~~~~~it~~~v~~~~~~ 438 (458)
|...++..||.+|+..|+.-
T Consensus 402 air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 402 AIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHTTCSSBCHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHH
Confidence 98888899999999999873
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.8e-26 Score=231.46 Aligned_cols=232 Identities=22% Similarity=0.209 Sum_probs=184.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|+.+|+||.|++++++.+...+.+. ..|..+++++|||||||||||++|+++|.+++ .+|+.++++++.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~~~~v~~~~l~ 243 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSEFV 243 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CEEEEEEGGGTC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEecchhh
Confidence 47789999999999999998877532 34778889999999999999999999999999 789999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
++|+|+++ .++++|..|.. .+||++|+||+|+++++|........ +.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~-~~---------------------------- 291 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSD-RE---------------------------- 291 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCC-CH----------------------------
T ss_pred ccccchhHHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCC-hH----------------------------
Confidence 99999998 69999999987 45999999999999988754321110 00
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 292 -------------------------------------------------------------------------------- 291 (428)
T 4b4t_K 292 -------------------------------------------------------------------------------- 291 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~ 341 (458)
.....+.||..|+.. ... ++|.+|
T Consensus 292 ----------------------------------------------~~r~l~~lL~~ldg~~~~~~v~vI~aT------- 318 (428)
T 4b4t_K 292 ----------------------------------------------VQRILIELLTQMDGFDQSTNVKVIMAT------- 318 (428)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHSCSSCSEEEEEEE-------
T ss_pred ----------------------------------------------HHHHHHHHHHHhhCCCCCCCEEEEEec-------
Confidence 011234455555543 223 566677
Q ss_pred cCCCCCCCCCCChhHhh--hhcc-cccC-CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLVI-IRTQ-IYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASV 417 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~~-i~~~-~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~ 417 (458)
|.|..|+|+|++ ||.. +.|+ .++.++...|++..+++..+.- +--++.|+..+...+.+....+++.|..
T Consensus 319 -----N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~-~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 319 -----NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAP-EADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp -----SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCT-TCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred -----CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCc-ccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 778999999986 8864 4886 6789999999998887655431 2237888988855688999999999999
Q ss_pred HHhhhCCCCccHHHHHHHHHh
Q 012719 418 VAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 418 ~a~~~~~~~it~~~v~~~~~~ 438 (458)
.|...++..|+.+|+..|+.-
T Consensus 393 ~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 393 RAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHH
Confidence 998888999999999999864
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.92 E-value=2.9e-24 Score=212.04 Aligned_cols=212 Identities=20% Similarity=0.210 Sum_probs=164.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH-------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI-------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~-------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.|..+|++|+|++++++.+..++.+. ..+..+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~ 89 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVS 89 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEEEEEEHHHHHT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCEEEEchHHHhh
Confidence 46678999999999999998777433 23344568999999999999999999999998 6799999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
.+.|..+ .++..|..+.. ..|++||+||+|.+.+++........
T Consensus 90 ~~~g~~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~-------------------------------- 134 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEAS-------------------------------- 134 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCT--------------------------------
T ss_pred cccchHHHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHH--------------------------------
Confidence 9999988 58999998876 45999999999999877643211111
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHh
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQ 265 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~ 265 (458)
T Consensus 135 -------------------------------------------------------------------------------- 134 (322)
T 3eie_A 135 -------------------------------------------------------------------------------- 134 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhc---cCCC-eEEEecCCccccc
Q 012719 266 MMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALES---SLSP-IVIFATNRGICNI 341 (458)
Q Consensus 266 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~---~~~~-i~il~tn~~~~~~ 341 (458)
...++.|+..|+. .... ++|.+|
T Consensus 135 ----------------------------------------------~~~~~~ll~~l~~~~~~~~~v~vi~at------- 161 (322)
T 3eie_A 135 ----------------------------------------------RRIKTELLVQMNGVGNDSQGVLVLGAT------- 161 (322)
T ss_dssp ----------------------------------------------HHHHHHHHHHHGGGGTSCCCEEEEEEE-------
T ss_pred ----------------------------------------------HHHHHHHHHHhccccccCCceEEEEec-------
Confidence 1123344444442 2334 455566
Q ss_pred cCCCCCCCCCCChhHhhhhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 342 RGTDMNSPHGIPLDLLDRLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
+.+..|++++++||.. +.++.++.++..+|++..+...+..++++.++.|+..+...+.+.+..+++.|+..|.
T Consensus 162 -----n~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~ 236 (322)
T 3eie_A 162 -----NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 236 (322)
T ss_dssp -----SCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHH
T ss_pred -----CChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 6677899999999964 4999999999999999999998888999999999999834478888888887765554
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.3e-23 Score=203.62 Aligned_cols=212 Identities=20% Similarity=0.208 Sum_probs=165.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHH-------hcccCCceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMIR-------QKKMAGRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~~-------~~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~~~~ 105 (458)
.|..+|+||+|++++++.+...+.+.. .+..+++++||+||||||||++|+++|+++ + .+|+.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--~~~~~i~~~~l~ 83 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISSSDLV 83 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS--CEEEEEECCSSC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC--CcEEEEEhHHHH
Confidence 356789999999999999987775431 123456899999999999999999999999 5 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
+.+.|..+ .++..|..+.. ..|++||+||+|++++.+........
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~------------------------------- 129 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAA------------------------------- 129 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHH-------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHH-------------------------------
Confidence 99999987 58899988875 45999999999999877653211110
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 130 -------------------------------------------------------------------------------- 129 (322)
T 1xwi_A 130 -------------------------------------------------------------------------------- 129 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc---CCC-eEEEecCCcccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS---LSP-IVIFATNRGICN 340 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~-i~il~tn~~~~~ 340 (458)
....+.|+..|+.. ... ++|.+|
T Consensus 130 -----------------------------------------------~~~~~~ll~~ld~~~~~~~~v~vI~at------ 156 (322)
T 1xwi_A 130 -----------------------------------------------RRIKTEFLVQMQGVGVDNDGILVLGAT------ 156 (322)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHCSSSCCTTEEEEEEE------
T ss_pred -----------------------------------------------HHHHHHHHHHHhcccccCCCEEEEEec------
Confidence 11234455555432 233 455566
Q ss_pred ccCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 341 IRGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 341 ~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+.+..+++++++||. .+.++.++.++..+|++..+...+..+++..++.|++.+...+.+....+++.|+..|
T Consensus 157 ------n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 157 ------NIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp ------SCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred ------CCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 667889999999995 5599999999999999999988888899999999999983446888888888776554
Q ss_pred h
Q 012719 420 K 420 (458)
Q Consensus 420 ~ 420 (458)
.
T Consensus 231 ~ 231 (322)
T 1xwi_A 231 V 231 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.91 E-value=7.6e-25 Score=236.93 Aligned_cols=216 Identities=18% Similarity=0.254 Sum_probs=146.6
Q ss_pred hcccCCCCCccC--CCCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 21 HTHIKGLGLEAN--GNAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 21 ~~~~~~~~~~~~--~~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
...+++..+.+. -.|+.+|+++.|++++++.+...+.+. +.+..+++++|||||||||||++|+++|.++
T Consensus 456 l~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 456 LSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp HSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 344444444332 247788999999999999988776533 3356678999999999999999999999999
Q ss_pred CCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCc---cCCchhhHHHHHHhhcc
Q 012719 91 GSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESI---TGGYGKSISHVIIGLKT 166 (458)
Q Consensus 91 ~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~---~~~~~~~~~~~l~~l~~ 166 (458)
+ .+|+.++++++.++|+|+++ +++++|+.|+. ..||||||||+|+++++|+.+. .+...+.++++|..|
T Consensus 536 ~--~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~---~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~m-- 608 (806)
T 3cf2_A 536 Q--ANFISIKGPELLTMWFGESEANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM-- 608 (806)
T ss_dssp T--CEEEECCHHHHHTTTCSSCHHHHHHHHHHHHT---TCSEEEECSCGGGCC--------------CHHHHHHHHHH--
T ss_pred C--CceEEeccchhhccccchHHHHHHHHHHHHHH---cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHH--
Confidence 8 78999999999999999999 69999999986 4599999999999999986542 233467778887664
Q ss_pred ccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH---
Q 012719 167 VKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL--- 243 (458)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l--- 243 (458)
|.+ ...+.|+|.++||.+..++.+..+.+|||. .+++|.| +...|..+++....
T Consensus 609 --------------dg~-----~~~~~V~vi~aTN~p~~lD~AllRpgRfd~--~i~v~lP--d~~~R~~il~~~l~~~~ 665 (806)
T 3cf2_A 609 --------------DGM-----STKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLP--DEKSRVAILKANLRKSP 665 (806)
T ss_dssp --------------HSS-----CSSSSEEEECC-CCSSSSCHHHHSTTTSCC--EEEC-------CHHHHTTTTTSSCC-
T ss_pred --------------hCC-----CCCCCEEEEEeCCCchhCCHhHcCCCcceE--EEEECCc--CHHHHHHHHHHHhcCCC
Confidence 322 223446777788888888888777788877 5677777 45568888776442
Q ss_pred -h---hHHHHhcCCCCh--hhHHHHHHhh
Q 012719 244 -H---DLDAANARPQGG--QDILSLMGQM 266 (458)
Q Consensus 244 -~---~l~~~~~~~~g~--adl~~l~~~~ 266 (458)
. +++.++..|+|| +||.++|...
T Consensus 666 ~~~~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 666 VAKDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp -CCC----------------CHHHHHHHH
T ss_pred CCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 1 788899999998 9999998765
No 13
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.90 E-value=1.6e-23 Score=212.71 Aligned_cols=351 Identities=17% Similarity=0.214 Sum_probs=171.7
Q ss_pred ccccchHHHHHHHHHHHHH-HHhc--------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc-hhh
Q 012719 40 AGFVGQVEAREAAGLVVDM-IRQK--------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS-SEV 109 (458)
Q Consensus 40 ~~liG~~~~~~~l~~l~~~-~~~~--------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~-~~~ 109 (458)
++|+||+++++++...+.. +++. ..+++++||+||||||||++|+++|+.++ .+|+.++++.+.. +|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~--~~~~~v~~~~~~~~g~v 92 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYV 92 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGGGC----C
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC--CCceeecchhhccccee
Confidence 3689999999998766632 2221 13458999999999999999999999998 6899999998888 588
Q ss_pred hh-hH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhc
Q 012719 110 KK-TE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEK 187 (458)
Q Consensus 110 ~~-~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
|. .+ .++..|..+... +++||++.+...... ....+.+.+++.. +|.+..
T Consensus 93 G~d~e~~lr~lf~~a~~~-------~~~De~d~~~~~~~~---~~e~rvl~~LL~~----------------~dg~~~-- 144 (444)
T 1g41_A 93 GKEVDSIIRDLTDSAMKL-------VRQQEIAKNRARAED---VAEERILDALLPP----------------AKNQWG-- 144 (444)
T ss_dssp CCCTHHHHHHHHHHHHHH-------HHHHHHHSCC---------------------------------------------
T ss_pred eccHHHHHHHHHHHHHhc-------chhhhhhhhhccchh---hHHHHHHHHHHHH----------------hhcccc--
Confidence 86 45 688889888653 347888876543221 2234555555533 233321
Q ss_pred cccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhhc
Q 012719 188 VAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMM 267 (458)
Q Consensus 188 ~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~~ 267 (458)
.+. + +.++||.+..++.+.++++|||..+.+ +.|+.. ..|.+++..-.+.++. .++..++..++
T Consensus 145 --~~~-v-~a~~TN~~~~ld~aL~rggr~D~~i~i--~lP~~~-~~~~ei~~~~g~~~~~---------~~~~~~~~~~~ 208 (444)
T 1g41_A 145 --EVE-N-HDSHSSTRQAFRKKLREGQLDDKEIEI--DVSAGV-SMGVEIMAPPGMEEMT---------NQLQSLFQNLG 208 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --ccc-c-ccccccCHHHHHHHHHcCCCcceEEEE--cCCCCc-cchhhhhcCCChHHHH---------HHHHHHHHhhc
Confidence 111 1 333378888888888899999885544 444322 1244443321111110 01111111111
Q ss_pred cchhHHHh---HHHHHH-----------HHHHHHHHHhhccccccceEEEEcccchhcH------------HHHHHHHHH
Q 012719 268 KPRKTEIT---DKLRQE-----------INKVVNRFIDEGAAELVPGVLFIDEVHMLDM------------ECFSYLNRA 321 (458)
Q Consensus 268 ~~~~~~i~---~~~~~~-----------i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~------------~~~~~Ll~~ 321 (458)
...+.... .+.++. ......+-+... ...+|+++||++.+.. .+|++||+.
T Consensus 209 ~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~a---e~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~ 285 (444)
T 1g41_A 209 SDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAV---EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPL 285 (444)
T ss_dssp -----------------CCGGGSCSSCCHHHHHHHHHHHH---HHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHh---ccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHH
Confidence 11100000 000000 000000001110 0138999999999953 278999999
Q ss_pred hhcc----------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcc-cccCCCCHHHHHHHHHH-----------
Q 012719 322 LESS----------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI-IRTQIYGPAEMIQILAI----------- 379 (458)
Q Consensus 322 lE~~----------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~----------- 379 (458)
||.. .+.++++++..- .+.+|..+.|+|++|+.+ +.|++|+.+++.+|+..
T Consensus 286 le~~~~~~~~~~~d~~~ilfI~~gaf-------~~~~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~ 358 (444)
T 1g41_A 286 VEGSTVSTKHGMVKTDHILFIASGAF-------QVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA 358 (444)
T ss_dssp HHCCEEEETTEEEECTTCEEEEEECC-------SSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred hcccccccccceecCCcEEEEecccc-------ccCChhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 9962 334444444100 113556688999999987 59999999999999941
Q ss_pred HHH--hcCCccCHHHHHHHHHHh-------hcCCHHHHHHhhHHHHHHHhhh-----C-CCCccHHHHHHHHHhhhchHH
Q 012719 380 RAQ--VEEIVLDEESLAHLGEIA-------RDTSLRHAVQLLYPASVVAKMN-----G-RDSICKADVEEVKALYLDAKS 444 (458)
Q Consensus 380 ~~~--~~~~~i~~~~l~~i~~~~-------~~g~~r~a~~ll~~a~~~a~~~-----~-~~~it~~~v~~~~~~~~~~~~ 444 (458)
... ...+.++++++..|++.+ ++.+.|.+...++.+..-+... + .-.||.+.|...++-.+....
T Consensus 359 ~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~d 438 (444)
T 1g41_A 359 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENED 438 (444)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTTTCHH
T ss_pred HhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccccCCC
Confidence 111 234579999999999864 3578888888887665433222 1 125899999988875555443
Q ss_pred HH
Q 012719 445 SA 446 (458)
Q Consensus 445 ~~ 446 (458)
..
T Consensus 439 l~ 440 (444)
T 1g41_A 439 LS 440 (444)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 14
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=3.2e-22 Score=198.44 Aligned_cols=126 Identities=25% Similarity=0.254 Sum_probs=112.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC-------------------CeEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS-------------------PIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~-------------------~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
+++||||++.++++.++.|++.|++... .++|.+| +....+.++|++||
T Consensus 108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at------------n~~~~l~~~L~~R~ 175 (338)
T 3pfi_A 108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT------------TRAGMLSNPLRDRF 175 (338)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE------------SCGGGSCHHHHTTC
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC------------CCccccCHHHHhhc
Confidence 8999999999999999999999998531 2566677 44556889999999
Q ss_pred -cccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 361 -VIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 361 -~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
..+.+++++.+++..++...+...++.+++++++.++..+ .|++|.+.++++.+..++...+...|+.+++..++..
T Consensus 176 ~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 176 GMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 5669999999999999999999999999999999999988 9999999999999998888888888999999988764
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.90 E-value=6.3e-23 Score=205.14 Aligned_cols=212 Identities=20% Similarity=0.210 Sum_probs=159.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH-------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI-------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~-------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.|..+|++|+|++++++.+...+.+. ..+..+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVS 122 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEEEHHHHHS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEeeHHHHhh
Confidence 46678999999999999988776433 12334568999999999999999999999998 7799999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
.+.+..+ .++..|..+.. ..|++||+||+|.+.+.+......
T Consensus 123 ~~~g~~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~---------------------------------- 165 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESE---------------------------------- 165 (355)
T ss_dssp CC---CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CT----------------------------------
T ss_pred hhcchHHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcch----------------------------------
Confidence 9998887 58888888765 459999999999998765432100
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHh
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQ 265 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~ 265 (458)
T Consensus 166 -------------------------------------------------------------------------------- 165 (355)
T 2qp9_X 166 -------------------------------------------------------------------------------- 165 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc---CCC-eEEEecCCccccc
Q 012719 266 MMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS---LSP-IVIFATNRGICNI 341 (458)
Q Consensus 266 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~-i~il~tn~~~~~~ 341 (458)
.....++.|+..|+.. ... ++|.+|
T Consensus 166 --------------------------------------------~~~~~~~~ll~~l~~~~~~~~~v~vI~at------- 194 (355)
T 2qp9_X 166 --------------------------------------------ASRRIKTELLVQMNGVGNDSQGVLVLGAT------- 194 (355)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHCC---CCEEEEEEE-------
T ss_pred --------------------------------------------HHHHHHHHHHHHhhcccccCCCeEEEeec-------
Confidence 0011334455555432 234 555566
Q ss_pred cCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcC-CHHHHHHhhHHHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDT-SLRHAVQLLYPASVVA 419 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g-~~r~a~~ll~~a~~~a 419 (458)
+.+..|++++++||. .+.+++++.+++.+|++..+...+..+++..++.|+..+ .| +.+.+..+++.|...|
T Consensus 195 -----n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t-~G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 195 -----NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMT-EGYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp -----SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHH
T ss_pred -----CCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 567789999999995 459999999999999999999888888999999999999 55 7888888888887766
Q ss_pred hh
Q 012719 420 KM 421 (458)
Q Consensus 420 ~~ 421 (458)
..
T Consensus 269 ~~ 270 (355)
T 2qp9_X 269 IR 270 (355)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 16
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.89 E-value=5.9e-23 Score=210.86 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=103.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAI 379 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 379 (458)
+||||||+|.++...++.|++.+|+.. .++|.+|+. +....+.++|+|||.++.|.+++.+++..++..
T Consensus 108 ~iLfIDEI~~l~~~~q~~LL~~le~~~-v~lI~att~----------n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~ 176 (447)
T 3pvs_A 108 TILFVDEVHRFNKSQQDAFLPHIEDGT-ITFIGATTE----------NPSFELNSALLSRARVYLLKSLSTEDIEQVLTQ 176 (447)
T ss_dssp EEEEEETTTCC------CCHHHHHTTS-CEEEEEESS----------CGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred cEEEEeChhhhCHHHHHHHHHHHhcCc-eEEEecCCC----------CcccccCHHHhCceeEEeeCCcCHHHHHHHHHH
Confidence 899999999999999999999999854 345555532 334578999999999999999999999999999
Q ss_pred HHHh-------cCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhh--CCCCccHHHHHHHHHh
Q 012719 380 RAQV-------EEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMN--GRDSICKADVEEVKAL 438 (458)
Q Consensus 380 ~~~~-------~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~--~~~~it~~~v~~~~~~ 438 (458)
.+.. .++.+++++++.|+..+ .|++|.++++|+.+...+... +...||.++|+.++.-
T Consensus 177 ~l~~~~~~~~~~~~~i~~~al~~L~~~~-~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 177 AMEDKTRGYGGQDIVLPDETRRAIAELV-NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHCTTTSSTTSSEECCHHHHHHHHHHH-CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHhhhhccccCcCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 9886 66789999999999998 999999999999998887533 4467999999998874
No 17
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.89 E-value=2.8e-22 Score=199.28 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=110.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||+|.|+.+++++|++++|+++.. .+|+++ +.+..++++++|||..+.|.+++.+++.+++.
T Consensus 112 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~------------n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~ 179 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLA------------NYAHKLTPALLSQCTRFRFQPLPQEAIERRIA 179 (340)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE------------SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEe------------cCccccchhHHhhceeEeccCCCHHHHHHHHH
Confidence 89999999999999999999999999877 777888 56678999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++.+++.+++++++.++.++ .|++|.++++|+.+...+...+...||.++|..+++
T Consensus 180 ~~~~~~~~~i~~~~~~~i~~~s-~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 180 NVLVHEKLKLSPNAEKALIELS-NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHTTTCCBCHHHHHHHHHHH-TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 9999999999999999999999 999999999998775444222234699999987655
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=8.2e-22 Score=190.67 Aligned_cols=238 Identities=20% Similarity=0.265 Sum_probs=179.3
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHH--------hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 31 ANGNAVPLAAGFVGQVEAREAAGLVVDMIR--------QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 31 ~~~~~~~~l~~liG~~~~~~~l~~l~~~~~--------~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
....|..+|++++|++++++.+..++.... .+..+++++||+||||||||++|+++|..++ .+++.++.+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~~~~v~~~ 85 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--ATFIRVVGS 85 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CEEEEEEGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehH
Confidence 345667889999999999999887765431 1345668999999999999999999999998 679999999
Q ss_pred cccchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHH
Q 012719 103 EVYSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYD 181 (458)
Q Consensus 103 ~~~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 181 (458)
++...+.+..+ .+...|..+.. ..|+++|+||++.+.+++.+........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~-------------------------- 136 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDRE-------------------------- 136 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGH--------------------------
T ss_pred HHHHhccchHHHHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHH--------------------------
Confidence 99999999877 58888888775 4489999999999886654321000000
Q ss_pred HHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHH
Q 012719 182 ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILS 261 (458)
Q Consensus 182 ~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~ 261 (458)
T Consensus 137 -------------------------------------------------------------------------------- 136 (285)
T 3h4m_A 137 -------------------------------------------------------------------------------- 136 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhc--cCCC-eEEEecCCcc
Q 012719 262 LMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALES--SLSP-IVIFATNRGI 338 (458)
Q Consensus 262 l~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~--~~~~-i~il~tn~~~ 338 (458)
....+..++..++. .... ++|.+|
T Consensus 137 -------------------------------------------------~~~~l~~ll~~~~~~~~~~~~~vI~tt---- 163 (285)
T 3h4m_A 137 -------------------------------------------------VQRTLMQLLAEMDGFDARGDVKIIGAT---- 163 (285)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCSSSSEEEEEEC----
T ss_pred -------------------------------------------------HHHHHHHHHHHhhCCCCCCCEEEEEeC----
Confidence 00112223333332 2224 455566
Q ss_pred ccccCCCCCCCCCCChhHhh--hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHH
Q 012719 339 CNIRGTDMNSPHGIPLDLLD--RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPA 415 (458)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a 415 (458)
+.+..+++.+++ ||. .+.+++++.++..+|++..+...++. .+..+..++..+...+++.+..+++.|
T Consensus 164 --------n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 164 --------NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp --------SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred --------CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 567788999998 886 45999999999999999888766654 233478888888344889999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHHHhhhc
Q 012719 416 SVVAKMNGRDSICKADVEEVKALYLD 441 (458)
Q Consensus 416 ~~~a~~~~~~~it~~~v~~~~~~~~~ 441 (458)
...|...+...||.+++..++.-++.
T Consensus 235 ~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 235 GMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 99999999999999999999986554
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.89 E-value=4.4e-22 Score=204.77 Aligned_cols=212 Identities=20% Similarity=0.207 Sum_probs=157.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHH-------HhcccCCceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCCcc
Q 012719 33 GNAVPLAAGFVGQVEAREAAGLVVDMI-------RQKKMAGRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGSEV 104 (458)
Q Consensus 33 ~~~~~~l~~liG~~~~~~~l~~l~~~~-------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~~~ 104 (458)
..|..+|++|+|++.++..+...+.+. ..+..+++++||+||||||||++|+++|.++ + .+|+.++.+++
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~~~l 204 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISSSDL 204 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECCC--
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeHHHH
Confidence 356788999999999999888766432 1234456899999999999999999999999 5 68999999999
Q ss_pred cchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHH
Q 012719 105 YSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183 (458)
Q Consensus 105 ~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 183 (458)
.+.+.|..+ .++..|..+.. ..|++||+||+|.+++.+.........
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~----------------------------- 252 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAAR----------------------------- 252 (444)
T ss_dssp -------CCCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGH-----------------------------
T ss_pred HhhhcchHHHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHH-----------------------------
Confidence 999999877 58889988875 459999999999998776543111111
Q ss_pred hhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHH
Q 012719 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLM 263 (458)
Q Consensus 184 ~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~ 263 (458)
T Consensus 253 -------------------------------------------------------------------------------- 252 (444)
T 2zan_A 253 -------------------------------------------------------------------------------- 252 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc---CCC-eEEEecCCccc
Q 012719 264 GQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS---LSP-IVIFATNRGIC 339 (458)
Q Consensus 264 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~-i~il~tn~~~~ 339 (458)
..++.|+..|+.. +.. ++|.+|
T Consensus 253 -------------------------------------------------~~~~~lL~~l~~~~~~~~~v~vI~at----- 278 (444)
T 2zan_A 253 -------------------------------------------------RIKTEFLVQMQGVGVDNDGILVLGAT----- 278 (444)
T ss_dssp -------------------------------------------------HHHHHHHTTTTCSSCCCSSCEEEEEE-----
T ss_pred -------------------------------------------------HHHHHHHHHHhCcccCCCCEEEEecC-----
Confidence 1233444444432 223 566677
Q ss_pred cccCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcC-CHHHHHHhhHHHHH
Q 012719 340 NIRGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDT-SLRHAVQLLYPASV 417 (458)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g-~~r~a~~ll~~a~~ 417 (458)
+.+..+++++++||. .+.++.++.++...|++..+...+..+++..+..|+..+ .| +.+....+++.|..
T Consensus 279 -------n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t-~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 279 -------NIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKT-DGYSGADISIIVRDALM 350 (444)
T ss_dssp -------SCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHT-TTCCHHHHHHHHHHHHT
T ss_pred -------CCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 566789999999996 559999999999999999998888889999999999999 55 78888888887775
Q ss_pred HHh
Q 012719 418 VAK 420 (458)
Q Consensus 418 ~a~ 420 (458)
.|.
T Consensus 351 ~a~ 353 (444)
T 2zan_A 351 QPV 353 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 20
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.89 E-value=3.8e-22 Score=198.56 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=112.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||++.++++.++.|+++||+++.. .+|+++ +.+..+++++++||..+.|.+++.+++.+++.
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~------------~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~ 202 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC------------NYVTRIIDPLASQCSKFRFKALDASNAIDRLR 202 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE------------SCGGGSCHHHHHHSEEEECCCCCHHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEe------------CchhhCcchhhccCceEEeCCCCHHHHHHHHH
Confidence 89999999999999999999999998776 677777 55667999999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCC-CccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRD-SICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~-~it~~~v~~~~~ 437 (458)
.++...++.+++++++.|++.+ .|++|.++++++.+..++...+.. .||.++|+.+++
T Consensus 203 ~~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 203 FISEQENVKCDDGVLERILDIS-AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHT-SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 9999999999999999999999 999999999999988876544333 799999998876
No 21
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.89 E-value=2.5e-22 Score=198.06 Aligned_cols=119 Identities=21% Similarity=0.169 Sum_probs=95.8
Q ss_pred eEEEEcccchhc-HHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHH----
Q 012719 300 GVLFIDEVHMLD-MECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEM---- 373 (458)
Q Consensus 300 ~Vl~IDE~~~l~-~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~---- 373 (458)
+|+||||+|.++ .+.++.|++++|+++.. .+|+++ +.+..++++++|||..+.|++++.+++
T Consensus 107 ~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~------------n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 107 KVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA------------NNIDGIIKPLQSRCRVITFGQPTDEDKIEMM 174 (324)
T ss_dssp EEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE------------SSGGGSCTTHHHHSEEEECCCCCHHHHHHHH
T ss_pred eEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe------------CCccccCHHHHhhCcEEEeCCCCHHHHHHHH
Confidence 899999999999 99999999999998766 777788 455689999999999999999998874
Q ss_pred ---HHHHHHHHHhcCCccCH-HHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 374 ---IQILAIRAQVEEIVLDE-ESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 374 ---~~il~~~~~~~~~~i~~-~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+.+...+..+++.+++ ++++.++..+ .|++|.+++.|+.+. ..+.||.++|+.++.
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~gd~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 175 KQMIRRLTEICKHEGIAIADMKVVAALVKKN-FPDFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHHHHHHTCCBSCHHHHHHHHHHT-CSCTTHHHHHHHHHG------GGTCBCC--------
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHhC-CCCHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 44555667788999999 9999999999 999999999999765 234588888887654
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.88 E-value=3.9e-21 Score=183.31 Aligned_cols=232 Identities=22% Similarity=0.252 Sum_probs=175.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHhc-------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 33 GNAVPLAAGFVGQVEAREAAGLVVDMIRQK-------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 33 ~~~~~~l~~liG~~~~~~~l~~l~~~~~~~-------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
..+..+|++++|++++++.+..++..+... ...+++++|+||||||||++|+++|..++ .|++.++++++.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~i~~~~~~ 82 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFV 82 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEECSCSST
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCEEEEeHHHHH
Confidence 346678999999999999998888765432 23457899999999999999999999997 679999999998
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
..+.+..+ .+...|+.+.. ..|+++|+||+|.+.+.+........
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~---~~~~il~iDeid~l~~~~~~~~~~~~------------------------------- 128 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGH------------------------------- 128 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHT---TCSEEEEETTHHHHTCCCSTTSCCTT-------------------------------
T ss_pred HHhhhhhHHHHHHHHHHHHH---cCCeeehhhhhhhhccCCCCCcCCCc-------------------------------
Confidence 88887766 58888888764 44899999999998765432100000
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHH
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMG 264 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~ 264 (458)
T Consensus 129 -------------------------------------------------------------------------------- 128 (257)
T 1lv7_A 129 -------------------------------------------------------------------------------- 128 (257)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccccc
Q 012719 265 QMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNI 341 (458)
Q Consensus 265 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~ 341 (458)
......++.++..++.. ..+ ++|.+|
T Consensus 129 --------------------------------------------~~~~~~~~~ll~~l~~~~~~~~~~vI~~t------- 157 (257)
T 1lv7_A 129 --------------------------------------------DEREQTLNQMLVEMDGFEGNEGIIVIAAT------- 157 (257)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHTCCSSSCEEEEEEE-------
T ss_pred --------------------------------------------hHHHHHHHHHHHHhhCcccCCCEEEEEee-------
Confidence 00012334455555532 233 566666
Q ss_pred cCCCCCCCCCCChhHhh--hhccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHhhcC-CHHHHHHhhHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLVII-RTQIYGPAEMIQILAIRAQVEEIVLDEES-LAHLGEIARDT-SLRHAVQLLYPAS 416 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~i~~~~~~g-~~r~a~~ll~~a~ 416 (458)
+.+..+.+.+++ ||... .++.++.++..+|++..++... +++++ +..++... .| +.|.+.++++.|.
T Consensus 158 -----n~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~-~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 158 -----NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGT-PGFSGADLANLVNEAA 229 (257)
T ss_dssp -----SCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTC-TTCCHHHHHHHHHHHH
T ss_pred -----CCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 566788888887 88544 8999999999999988776543 44333 66777777 77 9999999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHhh
Q 012719 417 VVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 417 ~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
..|...+...||.+|+..++.-.
T Consensus 230 ~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 230 LFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHH
Confidence 99988888899999999988743
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=185.86 Aligned_cols=234 Identities=20% Similarity=0.211 Sum_probs=162.6
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHhc-------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIRQK-------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~~~-------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
|..+|++++|++++++.+..++..+... ..+++++||+||||||||++|+++|+.++ .+++.++.+++...
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VPFLAMAGAEFVEV 78 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CCEEEEETTTTSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEechHHHHhh
Confidence 4567999999999999998888765432 24568999999999999999999999998 67999999999888
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
+.+..+ .+...|..+.. ..|+++|+||+|.+..++.........
T Consensus 79 ~~~~~~~~~~~~~~~a~~---~~~~vl~iDeid~l~~~~~~~~~~~~~-------------------------------- 123 (262)
T 2qz4_A 79 IGGLGAARVRSLFKEARA---RAPCIVYIDEIDAVGKKRSTTMSGFSN-------------------------------- 123 (262)
T ss_dssp STTHHHHHHHHHHHHHHH---TCSEEEEEECC------------------------------------------------
T ss_pred ccChhHHHHHHHHHHHHh---cCCeEEEEeCcchhhccccccccCccc--------------------------------
Confidence 887776 58888888775 348999999999987665321000000
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
+
T Consensus 124 ----------------------------------------~--------------------------------------- 124 (262)
T 2qz4_A 124 ----------------------------------------T--------------------------------------- 124 (262)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------h---------------------------------------
Confidence 0
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCccccccC
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNIRG 343 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~~~ 343 (458)
-.....+.|+..++.. ... ++|.+|
T Consensus 125 -------------------------------------------~~~~~l~~ll~~~~~~~~~~~~~vi~~t--------- 152 (262)
T 2qz4_A 125 -------------------------------------------EEEQTLNQLLVEMDGMGTTDHVIVLAST--------- 152 (262)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHTCCTTCCEEEEEEE---------
T ss_pred -------------------------------------------hHHHHHHHHHHHhhCcCCCCCEEEEecC---------
Confidence 0001223344444432 234 555566
Q ss_pred CCCCCCCCCChhHhh--hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 344 TDMNSPHGIPLDLLD--RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEES-LAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 344 ~~~~~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+.+..+++++++ ||. .+.+++++.++..++++..++..+...+.+. ...++..+...+.+....+++.|...|
T Consensus 153 ---n~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 153 ---NRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHA 229 (262)
T ss_dssp ---SCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-
T ss_pred ---CChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 556677788988 995 5599999999999999999998888887764 578888873335778889999998888
Q ss_pred hhhCCCCccHHHHHHHHHhh
Q 012719 420 KMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 420 ~~~~~~~it~~~v~~~~~~~ 439 (458)
...+...|+.+++..++.-+
T Consensus 230 ~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 230 AREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp -------CCBCCHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHh
Confidence 87778889999999988743
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.88 E-value=4.1e-21 Score=194.40 Aligned_cols=228 Identities=21% Similarity=0.205 Sum_probs=164.8
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
+..+|++|+|++.+++.+..++..... ...+++++||+||||||||++|+++|..++ .+|+.++++++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--ATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--CcEEEeeHHHhhcc
Confidence 446799999999999988877754422 123458999999999999999999999998 78999999999999
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
+.+..+ .+...|..+... .|++||+||+|.+++.+......
T Consensus 188 ~~g~~~~~~~~~~~~a~~~---~~~il~iDEid~l~~~~~~~~~~----------------------------------- 229 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVAREL---QPSIIFIDQVDSLLCERREGEHD----------------------------------- 229 (389)
T ss_dssp ----CHHHHHHHHHHHHHS---SSEEEEEETGGGGC--------C-----------------------------------
T ss_pred ccchHHHHHHHHHHHHHhc---CCeEEEEECchhhcccCCCccch-----------------------------------
Confidence 998887 588889888763 48999999999987654321100
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
T Consensus 230 -------------------------------------------------------------------------------- 229 (389)
T 3vfd_A 230 -------------------------------------------------------------------------------- 229 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc----CCC-eEEEecCCccccc
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS----LSP-IVIFATNRGICNI 341 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~----~~~-i~il~tn~~~~~~ 341 (458)
.....++.|+..++.. +.. ++|.+|
T Consensus 230 -------------------------------------------~~~~~~~~ll~~l~~~~~~~~~~v~vI~at------- 259 (389)
T 3vfd_A 230 -------------------------------------------ASRRLKTEFLIEFDGVQSAGDDRVLVMGAT------- 259 (389)
T ss_dssp -------------------------------------------THHHHHHHHHHHHHHHC-----CEEEEEEE-------
T ss_pred -------------------------------------------HHHHHHHHHHHHhhcccccCCCCEEEEEec-------
Confidence 0112333344444422 234 455566
Q ss_pred cCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCC-HHHHHHhhHHHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTS-LRHAVQLLYPASVVA 419 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~-~r~a~~ll~~a~~~a 419 (458)
+.+..+.+.+++||. .+.++.++.+++..|++..+...+..++++.+..|+..+ .|. .+.+..+++.++..+
T Consensus 260 -----n~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~-~g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 260 -----NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMT-DGYSGSDLTALAKDAALGP 333 (389)
T ss_dssp -----SCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHH
T ss_pred -----CCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 566788999999996 569999999999999999999999999999999999999 665 446666777777665
Q ss_pred hhh------------CCCCccHHHHHHHHHh
Q 012719 420 KMN------------GRDSICKADVEEVKAL 438 (458)
Q Consensus 420 ~~~------------~~~~it~~~v~~~~~~ 438 (458)
... +...|+.+|+..++.-
T Consensus 334 ~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 334 IRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 433 3346999999988874
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.88 E-value=9.7e-22 Score=193.30 Aligned_cols=120 Identities=25% Similarity=0.306 Sum_probs=105.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||++.++++.++.|++++|+++.. .+|+++ +.+..++++++|||..+.|++++.+++.+++.
T Consensus 112 ~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~------------~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 112 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC------------NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 179 (327)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE------------SCGGGSCHHHHHTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEe------------CCccccCHHHHhhCcEEEecCCCHHHHHHHHH
Confidence 89999999999999999999999998776 677777 55667899999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+...++.+++++++.|+..+ .|++|.++++++.+... ...||.++|..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 180 YIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAAL-----DKKITDENVFMVAS 232 (327)
T ss_dssp HHHHTTTCEECHHHHHHHHHHH-TTCHHHHHHHHHHHHTT-----CSEECHHHHHHHTT
T ss_pred HHHHhcCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 9999999999999999999999 99999999999866532 23577777766544
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=4.9e-21 Score=186.43 Aligned_cols=228 Identities=22% Similarity=0.201 Sum_probs=172.6
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
+..+|++++|++.+++.+...+..... ...+++++||+||||||||++|+++|+.++ .+|+.++++++...
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--ATFLNISAASLTSK 93 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CEEEEEESTTTSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEeeHHHHhhc
Confidence 567899999999999988877654321 123468999999999999999999999998 67999999999988
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
+.+..+ .++..|..+.. ..|+++|+||++.+.+.+......
T Consensus 94 ~~~~~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~----------------------------------- 135 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHE----------------------------------- 135 (297)
T ss_dssp SCSCHHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----C-----------------------------------
T ss_pred ccchHHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcch-----------------------------------
Confidence 888776 57788887765 459999999999988665321000
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
T Consensus 136 -------------------------------------------------------------------------------- 135 (297)
T 3b9p_A 136 -------------------------------------------------------------------------------- 135 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccC-----CC-eEEEecCCcccc
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSL-----SP-IVIFATNRGICN 340 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----~~-i~il~tn~~~~~ 340 (458)
.....++.|+..++..+ .. ++|.+|
T Consensus 136 -------------------------------------------~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~t------ 166 (297)
T 3b9p_A 136 -------------------------------------------ASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT------ 166 (297)
T ss_dssp -------------------------------------------CSHHHHHHHHHHHHHCC------CEEEEEEE------
T ss_pred -------------------------------------------HHHHHHHHHHHHHhcccccCCCCcEEEEeec------
Confidence 01123344555555432 23 455666
Q ss_pred ccCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHH-HHHHhhHHHHHH
Q 012719 341 IRGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLR-HAVQLLYPASVV 418 (458)
Q Consensus 341 ~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r-~a~~ll~~a~~~ 418 (458)
+.+..+++++++||. .+.++.++.++...+++..+...+..++++.++.++..+ .|..+ ....+++.|+..
T Consensus 167 ------n~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~-~g~~~~~l~~l~~~a~~~ 239 (297)
T 3b9p_A 167 ------NRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKIT-DGYSGSDLTALAKDAALE 239 (297)
T ss_dssp ------SCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTH
T ss_pred ------CChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 666789999999995 459999999999999999999988899999999999999 77554 555777877766
Q ss_pred HhhhC------------CCCccHHHHHHHHHh
Q 012719 419 AKMNG------------RDSICKADVEEVKAL 438 (458)
Q Consensus 419 a~~~~------------~~~it~~~v~~~~~~ 438 (458)
+.... ...||.+|+..++.-
T Consensus 240 a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 240 PIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 65432 246999999998774
No 27
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.88 E-value=9e-21 Score=187.95 Aligned_cols=127 Identities=22% Similarity=0.263 Sum_probs=111.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCC------------------C-eEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLS------------------P-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~------------------~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
.|+||||+|.+.+..++.|+..+++... + .++.++ +.+..|++++++||
T Consensus 104 ~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at------------~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 104 DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT------------TRSGLLSSPLRSRF 171 (334)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE------------SCGGGSCHHHHTTC
T ss_pred CEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec------------CCcccCCHHHHHhc
Confidence 7999999999999889999988886532 1 233344 66788999999999
Q ss_pred ccc-ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 361 VII-RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 361 ~~i-~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.+. .+++++.+++.++++..++..++.++++++..|+..+ +|++|.+.++|+.+..+|...+...||.++++.++...
T Consensus 172 ~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~-~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 172 GIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 755 9999999999999999999999999999999999999 99999999999999999988888889999999998854
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=9.2e-22 Score=192.49 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=92.7
Q ss_pred eEEEEcccchh---------cHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhh-cccccCCC
Q 012719 300 GVLFIDEVHML---------DMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL-VIIRTQIY 368 (458)
Q Consensus 300 ~Vl~IDE~~~l---------~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~-~~i~~~~~ 368 (458)
+||||||++.+ +.+.++.|++.|++.+.+ ++|+++|+... .....+.|+|+||| ..+.|++|
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-------~~~~~~~~~l~~R~~~~i~~~~~ 204 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-------ENFFQSNPGFRSRIAHHIEFPDY 204 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-------HHHHHHSTTHHHHEEEEEEECCC
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-------HHHHhhCHHHHHhCCeEEEcCCc
Confidence 56666666655 677889999999998776 56666643210 01112458899999 66699999
Q ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHHh-------hcCCHHHHHHhhHHHHHHHhhh----CCCCccHHHHH
Q 012719 369 GPAEMIQILAIRAQVEEIVLDEESLAHLGEIA-------RDTSLRHAVQLLYPASVVAKMN----GRDSICKADVE 433 (458)
Q Consensus 369 ~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~-------~~g~~r~a~~ll~~a~~~a~~~----~~~~it~~~v~ 433 (458)
+.+++..|++..+...++.+++++++.++..+ ..|++|.+.++++.+...+... +...++.+++.
T Consensus 205 ~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 205 SDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99999999999999999999999999999984 1378999999999887543322 23445555554
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=6.2e-21 Score=190.82 Aligned_cols=228 Identities=22% Similarity=0.193 Sum_probs=173.3
Q ss_pred CCCccccccchHHHHHHHHHHHHHHH-h------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIR-Q------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~-~------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
+..+|++|+|++.+++.+...+.... . ...+++++||+||||||||++|+++|+.++ .+|+.++++++...
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--ATFFSISASSLTSK 156 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--CEEEEEEGGGGCCS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--CeEEEEehHHhhcc
Confidence 45789999999999998887765421 1 123468999999999999999999999998 67999999999999
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
+.+..+ .++..|..+.. ..|++||+||+|.+.+.+......
T Consensus 157 ~~g~~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~----------------------------------- 198 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHE----------------------------------- 198 (357)
T ss_dssp STTHHHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------C-----------------------------------
T ss_pred ccchHHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcch-----------------------------------
Confidence 988877 57888887765 448999999999987664321000
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
T Consensus 199 -------------------------------------------------------------------------------- 198 (357)
T 3d8b_A 199 -------------------------------------------------------------------------------- 198 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhc----cCCC-eEEEecCCccccc
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALES----SLSP-IVIFATNRGICNI 341 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~----~~~~-i~il~tn~~~~~~ 341 (458)
.....++.|+..++. .... ++|.+|
T Consensus 199 -------------------------------------------~~~~~~~~lL~~l~~~~~~~~~~v~vI~at------- 228 (357)
T 3d8b_A 199 -------------------------------------------SSRRIKTEFLVQLDGATTSSEDRILVVGAT------- 228 (357)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHC----CCCCEEEEEEE-------
T ss_pred -------------------------------------------HHHHHHHHHHHHHhcccccCCCCEEEEEec-------
Confidence 011233444444443 2334 455566
Q ss_pred cCCCCCCCCCCChhHhhhhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcC-CHHHHHHhhHHHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLDRLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDT-SLRHAVQLLYPASVVA 419 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g-~~r~a~~ll~~a~~~a 419 (458)
+.+..+.+++++||. .+.++.++.++..++++..++..+..++++.++.|+..+ .| +.+.+..+++.|+..+
T Consensus 229 -----n~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t-~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 229 -----NRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQS-DAFSGADMTQLCREASLGP 302 (357)
T ss_dssp -----SCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHH
T ss_pred -----CChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 556788999999997 459999999999999999999999999999999999999 55 7788888888877655
Q ss_pred hhh------------CCCCccHHHHHHHHHh
Q 012719 420 KMN------------GRDSICKADVEEVKAL 438 (458)
Q Consensus 420 ~~~------------~~~~it~~~v~~~~~~ 438 (458)
... ....|+.+|+..++.-
T Consensus 303 ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~ 333 (357)
T 3d8b_A 303 IRSLQTADIATITPDQVRPIAYIDFENAFRT 333 (357)
T ss_dssp HHHCCC----------CCCBCHHHHHHHHHH
T ss_pred HHHhhhhhhccccccccCCcCHHHHHHHHHh
Confidence 431 2356999999998873
No 30
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.87 E-value=3.9e-21 Score=192.73 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=109.2
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++|||+|.++.+.++.|++.+|+++.. ++|+++ +.+..+.++++|||..+.|++++.+++.+++
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~------------~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l 187 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT------------TDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEE------------SCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEe------------CChHhCcHHHHhheeEeeCCCCCHHHHHHHH
Confidence 389999999999999999999999998877 677777 5566889999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+++..++.+++++++.|++.+ +|++|.+.++++.+..++ .+.||.++|..+++
T Consensus 188 ~~~~~~~~~~~~~~a~~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 188 EHILNEEHIAHEPRALQLLARAA-EGSLRDALSLTDQAIASG----DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHS-SSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhc----CCcccHHHHHHHhC
Confidence 99999999999999999999999 999999999999776543 35699999987755
No 31
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=4.7e-21 Score=188.60 Aligned_cols=126 Identities=27% Similarity=0.344 Sum_probs=110.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC------------------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL------------------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~------------------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
+++||||++.++.+.++.|++.+++.. .+ ++|.+| +.+..+.+++++||
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t------------~~~~~~~~~l~~R~ 159 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT------------TRPGLITAPLLSRF 159 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE------------SCCSSCSCSTTTTC
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC------------CCcccCCHHHHhcc
Confidence 899999999999999999999999752 22 566677 55567888999999
Q ss_pred c-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 361 V-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 361 ~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
. .+.+++++.+++..++...+...+..+++++++.++..+ .|++|.+.++++.+...+...+...|+.+++..++..
T Consensus 160 ~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 160 GIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRS-RGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp SCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS-CSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4 679999999999999999999999999999999999999 9999999999999888777667778999999887764
No 32
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.87 E-value=1.7e-20 Score=173.20 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=108.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
.|++|||++.++++.++.|++.+++++.. .+|+++ +.+..+.+++++||..+.+++++.+++.+++.
T Consensus 104 ~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~------------~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC------------NYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (226)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE------------SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred eEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEe------------CChhhcCHHHHHhCceeecCCCCHHHHHHHHH
Confidence 89999999999999999999999997766 667777 45567889999999988999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..+...+..+++++++.+++.+ .|++|.+.++++.+...+ +.||.++|+.+++
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 172 EICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 9999999999999999999999 999999999999877654 5799999999876
No 33
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.87 E-value=9.4e-21 Score=194.97 Aligned_cols=232 Identities=25% Similarity=0.297 Sum_probs=176.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.+..+|+||+|+++++..+..++..+.. +...++++||+||||||||++|+++|.+++ .||+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCeeeCCHHHHHH
Confidence 4567899999999999999988876643 234468999999999999999999999998 7899999999999
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
.+.|..+ .++..|..|.. ..||+||+||+|++.+++.....
T Consensus 88 ~~~g~~~~~~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~----------------------------------- 129 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLG----------------------------------- 129 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHH---TCSEEEEEETGGGTCCC-----------------------------------------
T ss_pred HHhcccHHHHHHHHHHHHh---cCCCEEEEechhhhhhhcccccC-----------------------------------
Confidence 8888876 58899998876 45999999999999876542100
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHh
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQ 265 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~ 265 (458)
|.
T Consensus 130 ---------------------------------------------------------------------g~--------- 131 (476)
T 2ce7_A 130 ---------------------------------------------------------------------GG--------- 131 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------cC---------
Confidence 00
Q ss_pred hccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc--CCC-eEEEecCCcccccc
Q 012719 266 MMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS--LSP-IVIFATNRGICNIR 342 (458)
Q Consensus 266 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~--~~~-i~il~tn~~~~~~~ 342 (458)
+.-....++.|+..|+.. ... ++|.+|
T Consensus 132 ------------------------------------------~~~~~~~l~~LL~~ld~~~~~~~viVIaaT-------- 161 (476)
T 2ce7_A 132 ------------------------------------------HDEREQTLNQLLVEMDGFDSKEGIIVMAAT-------- 161 (476)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE--------
T ss_pred ------------------------------------------cHHHHHHHHHHHHHHhccCCCCCEEEEEec--------
Confidence 000112345566666532 234 566667
Q ss_pred CCCCCCCCCCChhHhh--hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHhhcCCH-HHHHHhhHHHHH
Q 012719 343 GTDMNSPHGIPLDLLD--RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEES-LAHLGEIARDTSL-RHAVQLLYPASV 417 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~i~~~~~~g~~-r~a~~ll~~a~~ 417 (458)
+.+..+.+.+++ ||. .+.+++|+.++..+|++..++...+ ++++ +..++... .|.. |.+.++++.|..
T Consensus 162 ----n~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v~l~~la~~t-~G~sgadL~~lv~~Aal 234 (476)
T 2ce7_A 162 ----NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDVNLEIIAKRT-PGFVGADLENLVNEAAL 234 (476)
T ss_dssp ----SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCCHHHHHHTC-TTCCHHHHHHHHHHHHH
T ss_pred ----CChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchhhHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 556678888875 886 4599999999999999988776543 3333 77788888 6654 899999999998
Q ss_pred HHhhhCCCCccHHHHHHHHHhhh
Q 012719 418 VAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 418 ~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
.|...+...|+.+++..++.-.+
T Consensus 235 ~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 235 LAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHcCCCeecHHHHHHHHHHHh
Confidence 88888888899999999988554
No 34
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.86 E-value=2e-21 Score=190.33 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=107.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|++|||++.++.+.++.|++++|+++.. ++|+++ +.+..+.++++|||..+.|.+++.+++.+++.
T Consensus 104 ~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~------------~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC------------NYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp EEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEE------------SCGGGSCHHHHTTCEEEECCCCCHHHHHHHHH
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEe------------CChhhcchHHHhhCeEEEecCCCHHHHHHHHH
Confidence 89999999999999999999999998777 677777 55668899999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++..++.+++++++.++..+ .|++|.+++.++.+... ...||.++|..+++
T Consensus 172 ~~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 172 EICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHTTCCCBCHHHHHHHHHTT-TTCHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 9999999999999999999999 99999999999876532 34689998887655
No 35
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.86 E-value=7.8e-21 Score=186.48 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=107.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
.|++|||++.++.+.++.|++++|+++.. ++|+++ +.+..++++++|||..+.|++++.+++.+++.
T Consensus 109 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~------------~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 176 (323)
T 1sxj_B 109 KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFAC------------NQSNKIIEPLQSQCAILRYSKLSDEDVLKRLL 176 (323)
T ss_dssp EEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEE------------SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred eEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEe------------CChhhchhHHHhhceEEeecCCCHHHHHHHHH
Confidence 89999999999999999999999998776 677777 55678899999999999999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+++..++.+++++++.+++.+ .|++|.++++++.+.... ..||.++|..+++
T Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~-~G~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 177 QIIKLEDVKYTNDGLEAIIFTA-EGDMRQAINNLQSTVAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH-----SSBCHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----CCcCHHHHHHHHC
Confidence 9999999999999999999999 999999999998766321 4589999988765
No 36
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.86 E-value=6.4e-21 Score=186.29 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=92.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|..+|++|+|++++++.+..++... ..+..+++++||+||||||||++|+++|..++ .+|+.++++++.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l~ 86 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 86 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHHH
Confidence 36678999999999999998877643 33556678999999999999999999999998 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCcccc
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEET 146 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~ 146 (458)
+.+.|..+ .++..|..+.. ..|+++|+||+|.+.+.+.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQ---AAPCVLFFDELDSIAKARG 125 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHH---TCSEEEEECSTTHHHHHHT
T ss_pred hhhcCchHHHHHHHHHHHHh---cCCeEEEEEChHHHhhccC
Confidence 99988877 68899998875 3499999999999876654
No 37
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=1.5e-22 Score=222.11 Aligned_cols=200 Identities=23% Similarity=0.273 Sum_probs=137.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHh--------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMIRQ--------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~~~--------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.+..+|++|+|++++++.+..++..... +..++.++||+||||||||++|+++|..++ .+++.++++++.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~~i~v~~~~l~ 275 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIM 275 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CEEEEEEHHHHS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CcEEEEEchHhh
Confidence 3457899999999999988887765321 345678999999999999999999999998 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
+.+.+..+ .+..+|..+.. ..|+++|+||++.+++++.........+...+++.. ++.+.
T Consensus 276 ~~~~g~~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~l----------------l~g~~ 336 (806)
T 1ypw_A 276 SKLAGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL----------------MDGLK 336 (806)
T ss_dssp SSSTTHHHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHH----------------HHSSC
T ss_pred hhhhhhHHHHHHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHH----------------hhhhc
Confidence 99998877 58899998875 349999999999999887543222222333333222 11111
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH-------hhHHHHhcCCCCh-
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL-------HDLDAANARPQGG- 256 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l-------~~l~~~~~~~~g~- 256 (458)
...++++|.+ ++....++....+..||+.. +.++.| ....|.+++..... .++..++..++|+
T Consensus 337 ----~~~~v~vI~a-tn~~~~ld~al~r~gRf~~~--i~i~~p--~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 337 ----QRAHVIVMAA-TNRPNSIDPALRRFGRFDRE--VDIGIP--DATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp ----TTSCCEEEEE-CSCTTTSCTTTTSTTSSCEE--ECCCCC--CHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCC
T ss_pred ----ccccEEEecc-cCCchhcCHHHhcccccccc--cccCCC--CHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcc
Confidence 2345555544 44555555555555677653 344444 55667777764331 1567777888886
Q ss_pred -hhHHHHH
Q 012719 257 -QDILSLM 263 (458)
Q Consensus 257 -adl~~l~ 263 (458)
+++..++
T Consensus 408 g~dl~~l~ 415 (806)
T 1ypw_A 408 GADLAALC 415 (806)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 6665554
No 38
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.85 E-value=3.8e-20 Score=183.05 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=111.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-----------CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc-cccC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-----------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI-IRTQ 366 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~-i~~~ 366 (458)
+|+||||++.++++.++.|+..|++. +.+ +++.++|+.. ......++++++|||.. +.++
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~-------~~~~~~l~~~l~~Rf~~~i~i~ 183 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE-------QEGTYPLPEAQVDRFMMKIHLT 183 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC-------CSCCCCCCHHHHTTSSEEEECC
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc-------ccCcccCCHHHHhheeEEEEcC
Confidence 89999999999999999999999974 334 4444444321 01223489999999985 6999
Q ss_pred CCCHHHHHHHHHHHHHh----------------------cCCccCHHHHHHHHHHhh----cC---------------CH
Q 012719 367 IYGPAEMIQILAIRAQV----------------------EEIVLDEESLAHLGEIAR----DT---------------SL 405 (458)
Q Consensus 367 ~~~~~e~~~il~~~~~~----------------------~~~~i~~~~l~~i~~~~~----~g---------------~~ 405 (458)
+++.++..+|++..+.. .++.+++++++++++++. .+ ++
T Consensus 184 ~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~ 263 (331)
T 2r44_A 184 YLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGAST 263 (331)
T ss_dssp CCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCH
T ss_pred CCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcCh
Confidence 99999999999987764 267899999999987652 12 79
Q ss_pred HHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchH
Q 012719 406 RHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAK 443 (458)
Q Consensus 406 r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~ 443 (458)
|.++.+++.+..+|...|+..|+++||..++..++..+
T Consensus 264 R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 264 RAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999887654
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.85 E-value=1.6e-20 Score=187.14 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=100.1
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
+.|++|||++.|+++.++.|++.+|+++.. .+|++| +++..++++++|||..+.|++++.+++.+++
T Consensus 135 ~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t------------~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l 202 (354)
T 1sxj_E 135 YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC------------DSMSPIIAPIKSQCLLIRCPAPSDSEISTIL 202 (354)
T ss_dssp CEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEE------------SCSCSSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred CeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEe------------CCHHHHHHHHHhhceEEecCCcCHHHHHHHH
Confidence 489999999999999999999999998766 788888 6777899999999999999999999999999
Q ss_pred HHHHHhcCCccC-HHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 378 AIRAQVEEIVLD-EESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 378 ~~~~~~~~~~i~-~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+.+++++++.++ +++++.|++.+ +|++|.++++++.+...+
T Consensus 203 ~~~~~~~~~~~~~~~~l~~i~~~~-~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 203 SDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHTCEECCSHHHHHHHHHH-TTCHHHHHHHHTHHHHTT
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 999999999999 99999999999 999999999999877654
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.85 E-value=3.6e-20 Score=173.06 Aligned_cols=122 Identities=26% Similarity=0.354 Sum_probs=107.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
+.|++|||++.++++.++.|++.+++++.. .+|+++ +.+..+.+++++||..+.+++++.+++.+++
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t------------~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l 194 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT------------TDPQKLPVTILSRCLQFHLKALDVEQIRHQL 194 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE------------SCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe------------CChHhCCHHHHHHhhhccCCCCCHHHHHHHH
Confidence 389999999999999999999999988766 677777 4556788999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
...+...+..+++++++.|++.+ .|++|.+.++++.+... +.+.||.++|+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~-~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 195 EHILNEEHIAHEPRALQLLARAA-EGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHTTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHSC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc----cCceecHHHHHHHhC
Confidence 99999999999999999999999 99999999999977543 335799999998865
No 41
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.85 E-value=6.2e-20 Score=181.91 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=91.7
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
++|++|||+|.|+.+++|+|++.+|+|+.. ++|++| +++..++++++|||+.+.|++++.+++.++|
T Consensus 109 ~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t------------~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L 176 (334)
T 1a5t_A 109 AKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLAT------------REPERLLATLRSRCRLHYLAPPPEQYAVTWL 176 (334)
T ss_dssp CEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEE------------SCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred cEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEe------------CChHhCcHHHhhcceeeeCCCCCHHHHHHHH
Confidence 499999999999999999999999999877 788888 6678999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHH
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPAS 416 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~ 416 (458)
..++ .+++++++.++..+ +|++|.++++++...
T Consensus 177 ~~~~-----~~~~~~~~~l~~~s-~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 177 SREV-----TMSQDALLAALRLS-AGSPGAALALFQGDN 209 (334)
T ss_dssp HHHC-----CCCHHHHHHHHHHT-TTCHHHHHHTTSSHH
T ss_pred HHhc-----CCCHHHHHHHHHHc-CCCHHHHHHHhccch
Confidence 8874 78999999999999 999999999987654
No 42
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.85 E-value=3.1e-20 Score=184.62 Aligned_cols=133 Identities=18% Similarity=0.302 Sum_probs=108.5
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-------------CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc-cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-------------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI-IR 364 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-------------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~-i~ 364 (458)
+|+||||++.++++.++.|+++||+. +.+ ++|.++|+ ....++++|++||.. +.
T Consensus 146 ~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~-----------~~~~l~~~L~~R~~~~~~ 214 (350)
T 1g8p_A 146 GYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP-----------EEGDLRPQLLDRFGLSVE 214 (350)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS-----------CSCCCCHHHHTTCSEEEE
T ss_pred CEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC-----------CCCCCCHHHHhhcceEEE
Confidence 89999999999999999999999974 224 45555652 234799999999976 69
Q ss_pred cCCCC-HHHHHHHHHHH-----------------------------HHhcCCccCHHHHHHHHHHhhcC----CHHHHHH
Q 012719 365 TQIYG-PAEMIQILAIR-----------------------------AQVEEIVLDEESLAHLGEIARDT----SLRHAVQ 410 (458)
Q Consensus 365 ~~~~~-~~e~~~il~~~-----------------------------~~~~~~~i~~~~l~~i~~~~~~g----~~r~a~~ 410 (458)
+++++ .++..+|++.+ ....++.++++++++|+.++ .+ ++|.+.+
T Consensus 215 l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~-~~~~~~~~R~~~~ 293 (350)
T 1g8p_A 215 VLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC-IALGSDGLRGELT 293 (350)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH-HHSSSCSHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHhCCCCccHHHH
Confidence 99995 55555666542 23445789999999999998 54 7899999
Q ss_pred hhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHH
Q 012719 411 LLYPASVVAKMNGRDSICKADVEEVKALYLDAKS 444 (458)
Q Consensus 411 ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~ 444 (458)
+++.|..+|...++..|+.+||..++.+.+..+.
T Consensus 294 ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 294 LLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp HHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 9999999999999989999999999999887764
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.85 E-value=3.7e-20 Score=190.14 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=109.4
Q ss_pred eEEEEcccchhcH--HHHHHHHHHhhccC--CCeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCHHH
Q 012719 300 GVLFIDEVHMLDM--ECFSYLNRALESSL--SPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~--~~~~~Ll~~lE~~~--~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~~e 372 (458)
.||||||++.+.. ..++.|+.+++... ...+|++++..+ .....+.++++||| ..+.+++++.++
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~--------~~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP--------QKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG--------GGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH--------HHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 7999999999986 78888888887542 235666775322 12234889999999 467999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
+..+++..+...++.++++++++|+..+ .|++|.+.++|+.+..+|...+. .||.++++.++.-..
T Consensus 268 r~~iL~~~~~~~~~~i~~e~l~~la~~~-~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 268 RKSIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHTCCCCTTHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999999999999877765 599999999988665
No 44
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=3.9e-20 Score=180.51 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=96.8
Q ss_pred eEEEEcccchhcHHH------------HHHHHHHhhcc----------CCC-eEEEecCCccccccCCCCCCCCCCChhH
Q 012719 300 GVLFIDEVHMLDMEC------------FSYLNRALESS----------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDL 356 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~------------~~~Ll~~lE~~----------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l 356 (458)
+|+||||++.++++. ++.|++.||+. ... ++|.++|.. .+.+..++++|
T Consensus 118 ~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~l~~~l 189 (310)
T 1ofh_A 118 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ--------VARPSDLIPEL 189 (310)
T ss_dssp CEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCS--------SSCGGGSCHHH
T ss_pred CEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcc--------cCCcccCCHHH
Confidence 788888888887544 88999999974 234 455554321 14567899999
Q ss_pred hhhhcc-cccCCCCHHHHHHHHHH-----------HHHhcC--CccCHHHHHHHHHHhh-------cCCHHHHHHhhHHH
Q 012719 357 LDRLVI-IRTQIYGPAEMIQILAI-----------RAQVEE--IVLDEESLAHLGEIAR-------DTSLRHAVQLLYPA 415 (458)
Q Consensus 357 ~sR~~~-i~~~~~~~~e~~~il~~-----------~~~~~~--~~i~~~~l~~i~~~~~-------~g~~r~a~~ll~~a 415 (458)
++||.. +.|++++.+++.+|++. .+...+ +.++++++++|++.+. .|++|.+.++++.+
T Consensus 190 ~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~ 269 (310)
T 1ofh_A 190 QGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL 269 (310)
T ss_dssp HHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHH
T ss_pred HhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHH
Confidence 999965 69999999999999983 223344 4799999999999874 48999999999987
Q ss_pred HHHHhh-----hCCC-CccHHHHHHHHHh
Q 012719 416 SVVAKM-----NGRD-SICKADVEEVKAL 438 (458)
Q Consensus 416 ~~~a~~-----~~~~-~it~~~v~~~~~~ 438 (458)
...+.. .+.. .||.++|+.+++-
T Consensus 270 ~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 270 MDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp SHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 643221 1221 4999999998764
No 45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.84 E-value=5.5e-20 Score=192.75 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=99.9
Q ss_pred eEEEEcccchhcHH---HHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHH
Q 012719 300 GVLFIDEVHMLDME---CFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQI 376 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~---~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 376 (458)
.|+||||++.+..+ ..+.|++.+++...++++++++ ... ...+++++||..+.|++++.+++.++
T Consensus 150 ~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~-----------~~~-~~l~~l~~r~~~i~f~~~~~~~~~~~ 217 (516)
T 1sxj_A 150 FVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNE-----------RNL-PKMRPFDRVCLDIQFRRPDANSIKSR 217 (516)
T ss_dssp EEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESC-----------TTS-STTGGGTTTSEEEECCCCCHHHHHHH
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcC-----------CCC-ccchhhHhceEEEEeCCCCHHHHHHH
Confidence 89999999999764 4488999999987776555542 222 23456999999999999999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 377 LAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 377 l~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+..++..+++.+++++++.|++.+ .|++|.++++|+.+.. +...|+.++|+.++.
T Consensus 218 L~~i~~~~~~~i~~~~l~~la~~s-~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 218 LMTIAIREKFKLDPNVIDRLIQTT-RGDIRQVINLLSTIST-----TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHTCCCCTTHHHHHHHHT-TTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHH
Confidence 999999999999999999999999 9999999999986543 345689999888766
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.83 E-value=1.5e-19 Score=187.33 Aligned_cols=226 Identities=21% Similarity=0.235 Sum_probs=173.1
Q ss_pred CCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 36 VPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 36 ~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
..+|++++|++.++..+..++... ..+..+++++||+||||||||++|+++|..++ .||+.++++++.+.
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSK 277 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEEEEEEHHHHHTS
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCEEEEEchHhhhh
Confidence 457999999999999988777654 22345678999999999999999999999997 78999999999999
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
+.|..+ .++..|..+.. ..|++||+||+|.+.+++....
T Consensus 278 ~~g~~~~~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~------------------------------------- 317 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTH------------------------------------- 317 (489)
T ss_dssp CTTHHHHHHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCC-------------------------------------
T ss_pred hcchhHHHHHHHHHHHHh---cCCcEEEecchhhhcccccccc-------------------------------------
Confidence 998887 68899998876 3489999999999987654210
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
T Consensus 318 -------------------------------------------------------------------------------- 317 (489)
T 3hu3_A 318 -------------------------------------------------------------------------------- 317 (489)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccC--CC-eEEEecCCccccccC
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSL--SP-IVIFATNRGICNIRG 343 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~~~ 343 (458)
..+....++.|++.|+... .. ++|.+|
T Consensus 318 -----------------------------------------~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT--------- 347 (489)
T 3hu3_A 318 -----------------------------------------GEVERRIVSQLLTLMDGLKQRAHVIVMAAT--------- 347 (489)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHSCTTSCEEEEEEE---------
T ss_pred -----------------------------------------chHHHHHHHHHHHHhhccccCCceEEEEec---------
Confidence 0012235667777777543 34 566666
Q ss_pred CCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHh
Q 012719 344 TDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 344 ~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~ 420 (458)
+.+..|++.+++ ||.. +.++.++.++..+||+..++...+..+ ..+..++..+...+.+.+..+++.|+..|.
T Consensus 348 ---n~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~-~~l~~la~~t~g~s~~dL~~L~~~A~~~a~ 423 (489)
T 3hu3_A 348 ---NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD-VDLEQVANETHGHVGADLAALCSEAALQAI 423 (489)
T ss_dssp ---SCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT-CCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred ---CCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch-hhHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 556778899998 7754 599999999999999998876655432 236778877734568888888898888886
Q ss_pred hhCCC-----------------CccHHHHHHHHH
Q 012719 421 MNGRD-----------------SICKADVEEVKA 437 (458)
Q Consensus 421 ~~~~~-----------------~it~~~v~~~~~ 437 (458)
..... .||.+|++.|+.
T Consensus 424 r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 424 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 457 (489)
T ss_dssp HTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHT
T ss_pred HhccccccccccccchhhcccCcCCHHHHHHHHH
Confidence 55432 378888888877
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.83 E-value=1.2e-19 Score=170.01 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=104.8
Q ss_pred eEEEEcccchhcHHH--HHHHHHHhhccC---CCeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCHH
Q 012719 300 GVLFIDEVHMLDMEC--FSYLNRALESSL---SPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGPA 371 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~--~~~Ll~~lE~~~---~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~~ 371 (458)
+|++|||++.++... ++.|+..++... ...+|++++... .....+.+.+++|| ..+.+++++.+
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~--------~~~~~~~~~l~~r~~~~~~i~l~~~~~~ 177 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP--------MEAGFVLPDLVSRMHWGLTYQLQPMMDD 177 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT--------TTTTCCCHHHHHHHHHSEEEECCCCCGG
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH--------HHHHHhhhhhhhHhhcCceEEeCCCCHH
Confidence 899999999997655 788888876542 223666775321 12224568999999 67799999999
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 372 EMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 372 e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
++.+++...++..++.+++++++++++.+ .|++|.+.++++.+...|...++ .||.++|+.++.
T Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLPEDVGRFLLNRM-ARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 99999999999999999999999999999 99999999999999988865554 599999998875
No 48
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=173.99 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=139.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.|..+|+||.|.+++++.+...+... .-+...+++++|+||||||||++++++|..++ .+++.+++.++.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~--~~~i~i~g~~l~ 81 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG--LNFISVKGPELL 81 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEEETTTTC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC--CCEEEEEcHHHH
Confidence 46778999999999999998755221 22445567899999999999999999999998 469999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHh
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALI 184 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 184 (458)
..+.++.+ .+..+|..+.. ..|+++|+||++.+++.+.....+...+...+++..| +..
T Consensus 82 ~~~~~~~~~~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~L----------------sgg- 141 (274)
T 2x8a_A 82 NMYVGESERAVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEM----------------DGL- 141 (274)
T ss_dssp SSTTHHHHHHHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHH----------------HTC-
T ss_pred hhhhhHHHHHHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhh----------------hcc-
Confidence 88888877 58899988764 3499999999999987654332222334444444332 111
Q ss_pred hhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH----------hhHHHHhcCCC
Q 012719 185 KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL----------HDLDAANARPQ 254 (458)
Q Consensus 185 ~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l----------~~l~~~~~~~~ 254 (458)
.....+++.++++.+..++.+..+.+|||. .++++.| +...|.++++.+.. -+++.++..+.
T Consensus 142 ----~~~~~~i~ia~tn~p~~LD~al~r~gRfd~--~i~~~~P--~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~ 213 (274)
T 2x8a_A 142 ----EARQQVFIMAATNRPDIIDPAILRPGRLDK--TLFVGLP--PPADRLAILKTITKNGTKPPLDADVNLEAIAGDLR 213 (274)
T ss_dssp ----CSTTCEEEEEEESCGGGSCHHHHSTTSSCE--EEECCSC--CHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSG
T ss_pred ----cccCCEEEEeecCChhhCCHhhcCcccCCe--EEEeCCc--CHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhc
Confidence 223456777777788888877777778877 4556666 45668887765431 16788888754
Q ss_pred --Ch--hhHHHHHHhhc
Q 012719 255 --GG--QDILSLMGQMM 267 (458)
Q Consensus 255 --g~--adl~~l~~~~~ 267 (458)
|| +|+.++|....
T Consensus 214 ~~g~sgadl~~l~~~a~ 230 (274)
T 2x8a_A 214 CDCYTGADLSALVREAS 230 (274)
T ss_dssp GGSCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 87 99999987653
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=2e-19 Score=177.36 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=102.1
Q ss_pred eEEEEcccchhcH--HHHHHHHHHhhcc--CCCeEEEecCCccccccCCCCCCCCCCChhHhhhh---cccccCCCCHHH
Q 012719 300 GVLFIDEVHMLDM--ECFSYLNRALESS--LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL---VIIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~--~~~~~Ll~~lE~~--~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~---~~i~~~~~~~~e 372 (458)
+||||||++.++. ..++.|+.+++.. ....+|++++..+ .....+.+.|+||| ..+.+++ +.++
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~--------~~l~~l~~~L~sR~~~~~~i~l~~-~~~e 170 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP--------QKLDGVSDRLVSRFEGGILVEIEL-DNKT 170 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG--------GGCTTSCHHHHHHHHTSEEEECCC-CHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh--------HHHHHhhhHhhhcccCceEEEeCC-CHHH
Confidence 8999999999985 6777777776643 2234555664221 12236889999999 5679999 9999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH---h-hhCCCCc-cHHHHHHHHHhhhch
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA---K-MNGRDSI-CKADVEEVKALYLDA 442 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a---~-~~~~~~i-t~~~v~~~~~~~~~~ 442 (458)
+..+++..++..++.++++++++|+..+ |++|.+.++++.+.... . ..+...| |.++|..++.-+++.
T Consensus 171 ~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~~ 243 (324)
T 1l8q_A 171 RFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYAV 243 (324)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998 99999999999877651 0 1223458 999999988866654
No 50
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.81 E-value=3.4e-19 Score=184.36 Aligned_cols=231 Identities=26% Similarity=0.317 Sum_probs=171.3
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHhc-------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIRQK-------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~~~-------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
+..+|++|+|+++++..+..++..+... ...+++++|+||||||||++|+++|..++ .+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHh
Confidence 6788999999999999999888776542 23357899999999999999999999997 78999999999888
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
+.+..+ .++..|+.+.. ..|+++|+||++.+...+....... ..
T Consensus 104 ~~g~~~~~v~~lfq~a~~---~~p~il~IDEId~l~~~r~~~~~~~-~~------------------------------- 148 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGG-ND------------------------------- 148 (499)
T ss_dssp CTTHHHHHHHHHTTTSSS---SSSCEEEEECGGGTCCCSSSSTTTS-SH-------------------------------
T ss_pred hhhhHHHHHHHHHHHHHh---cCCCEEEEehHHHHHHhhccCcCCC-cH-------------------------------
Confidence 888766 57777776543 4589999999999876543210000 00
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
T Consensus 149 -------------------------------------------------------------------------------- 148 (499)
T 2dhr_A 149 -------------------------------------------------------------------------------- 148 (499)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccC--CC-eEEEecCCccccccC
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSL--SP-IVIFATNRGICNIRG 343 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~~~ 343 (458)
| ....++.|+..|+... .. +++.+|
T Consensus 149 ---------------------------------------e----~~~~l~~LL~~Ldg~~~~~~viviAat--------- 176 (499)
T 2dhr_A 149 ---------------------------------------E----REQTLNQLLVEMDGFEKDTAIVVMAAT--------- 176 (499)
T ss_dssp ---------------------------------------H----HHHHHHHHHHHGGGCCSSCCCEEEECC---------
T ss_pred ---------------------------------------H----HHHHHHHHHHHhcccccCccEEEEEec---------
Confidence 0 0012334445555332 23 455555
Q ss_pred CCCCCCCCCChhHhh--hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHhhcCCH-HHHHHhhHHHHHH
Q 012719 344 TDMNSPHGIPLDLLD--RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEES-LAHLGEIARDTSL-RHAVQLLYPASVV 418 (458)
Q Consensus 344 ~~~~~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~i~~~~~~g~~-r~a~~ll~~a~~~ 418 (458)
+.|..|.+++++ ||. .+.++.++.++..+|++..++ +..+++++ +..++... .|.. |.+.++++.|..+
T Consensus 177 ---n~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t-~G~~gadL~~lv~~Aa~~ 250 (499)
T 2dhr_A 177 ---NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALL 250 (499)
T ss_dssp ---SCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTS-CSCCHHHHHHHHHHHHHH
T ss_pred ---CChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 556668888888 554 449999999999999987654 34555554 77888888 6665 9999999999988
Q ss_pred HhhhCCCCccHHHHHHHHHhhh
Q 012719 419 AKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 419 a~~~~~~~it~~~v~~~~~~~~ 440 (458)
|...+...||.+|+..++.-..
T Consensus 251 A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 251 AAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp HTTTCCSSCCSHHHHHHHHHHT
T ss_pred HHHhCCCccCHHHHHHHHHHHh
Confidence 8877777899999999987543
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.81 E-value=1.1e-18 Score=175.10 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=105.6
Q ss_pred eEEEEcccchhcHH--HHHHHHHHhhcc-----CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhh--cccccCCCC
Q 012719 300 GVLFIDEVHMLDME--CFSYLNRALESS-----LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL--VIIRTQIYG 369 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~--~~~~Ll~~lE~~-----~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~--~~i~~~~~~ 369 (458)
.|+||||+|.+... .++.|..+++.. ..+ ++|+++|.. .....+.+.+++|| ..+.|++++
T Consensus 132 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~---------~~~~~l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 132 YIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL---------GFVENLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp EEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS---------TTSSSSCHHHHTTTTSEECCBCCCC
T ss_pred EEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC---------chHhhhCHHHHhcCCCeEEeeCCCC
Confidence 69999999999876 666666665532 333 666677432 22367889999999 467999999
Q ss_pred HHHHHHHHHHHHHh--cCCccCHHHHHHHHHHhhc---CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 370 PAEMIQILAIRAQV--EEIVLDEESLAHLGEIARD---TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 370 ~~e~~~il~~~~~~--~~~~i~~~~l~~i~~~~~~---g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
.+++.++++.++.. .+..+++++++.+++.+ . |++|.++++++.++..|...+...|+.++|..++.-.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALA-AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHH-HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999998875 56789999999999999 7 9999999999999999987788889999999988744
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.81 E-value=1.8e-18 Score=164.40 Aligned_cols=230 Identities=26% Similarity=0.294 Sum_probs=163.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 32 NGNAVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 32 ~~~~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
...|..+|++++|+++++..+..+...... +...+++++|+||||||||+++++++..++ .+++.+++.++
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 445778999999999999999887765532 223356899999999999999999999997 67999988887
Q ss_pred cchhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHH
Q 012719 105 YSSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183 (458)
Q Consensus 105 ~~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 183 (458)
...+.+... .+...|+.+.. ..|+++++||++.+...+.... .....
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~---~~~~i~~~Deid~l~~~~~~~~-~~~~~---------------------------- 133 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGV-GGGND---------------------------- 133 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTT---SSSEEEEEETHHHHHC----------CH----------------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHh---cCCeEEEehhhhhhhcccCccc-cccch----------------------------
Confidence 766666655 47777877653 3489999999988764432100 00000
Q ss_pred hhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHH
Q 012719 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLM 263 (458)
Q Consensus 184 ~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~ 263 (458)
T Consensus 134 -------------------------------------------------------------------------------- 133 (254)
T 1ixz_A 134 -------------------------------------------------------------------------------- 133 (254)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccC--CC-eEEEecCCcccc
Q 012719 264 GQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSL--SP-IVIFATNRGICN 340 (458)
Q Consensus 264 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~ 340 (458)
-..+.++.++..|+... .. +++.++
T Consensus 134 ----------------------------------------------~~~~~~~~ll~~l~g~~~~~~~i~~a~t------ 161 (254)
T 1ixz_A 134 ----------------------------------------------EREQTLNQLLVEMDGFEKDTAIVVMAAT------ 161 (254)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTCCTTCCEEEEEEE------
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhCCCCCCCEEEEEcc------
Confidence 00012233444444322 22 444455
Q ss_pred ccCCCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHhhcC-CHHHHHHhhHHH
Q 012719 341 IRGTDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEES-LAHLGEIARDT-SLRHAVQLLYPA 415 (458)
Q Consensus 341 ~~~~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~i~~~~~~g-~~r~a~~ll~~a 415 (458)
+.|..+++++++ |+.. +.++.++.++..+|++..++. ..+++++ +..++..+ .| +.|.+.++++.|
T Consensus 162 ------~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~-~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 162 ------NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRT-PGFVGADLENLLNEA 232 (254)
T ss_dssp ------SCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHH
T ss_pred ------CCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 667788999988 6654 499999999999999877654 4555544 78888888 55 458999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHH
Q 012719 416 SVVAKMNGRDSICKADVEEVK 436 (458)
Q Consensus 416 ~~~a~~~~~~~it~~~v~~~~ 436 (458)
...|...+...||.+++++++
T Consensus 233 ~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 233 ALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHhcCCCcCHHHHHHHh
Confidence 998888777889999999875
No 53
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.6e-19 Score=170.80 Aligned_cols=132 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhh---ccCCC-eEEEecCCccccccCCCCCCCC-CCChhHhhhhc--ccccCCCCHH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALE---SSLSP-IVIFATNRGICNIRGTDMNSPH-GIPLDLLDRLV--IIRTQIYGPA 371 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE---~~~~~-i~il~tn~~~~~~~~~~~~~~~-~l~~~l~sR~~--~i~~~~~~~~ 371 (458)
+.|+++||+|.+. .++.|+..++ ..... ++|..+|.. ..+. .|++.++|||. .+.|+||+.+
T Consensus 133 ~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~---------d~~~~~L~~~v~SR~~~~~i~F~pYt~~ 201 (318)
T 3te6_A 133 KTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHN---------VTIREQINIMPSLKAHFTEIKLNKVDKN 201 (318)
T ss_dssp EEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSS---------CCCHHHHHTCHHHHTTEEEEECCCCCHH
T ss_pred ceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCc---------ccchhhcchhhhccCCceEEEeCCCCHH
Confidence 3799999999997 4555555544 44445 555556432 2222 24556889994 5799999999
Q ss_pred HHHHHHHHHHHhcC-----------------------------------CccCHHHHHHHHHH--hhcCCHHHHHHhhHH
Q 012719 372 EMIQILAIRAQVEE-----------------------------------IVLDEESLAHLGEI--ARDTSLRHAVQLLYP 414 (458)
Q Consensus 372 e~~~il~~~~~~~~-----------------------------------~~i~~~~l~~i~~~--~~~g~~r~a~~ll~~ 414 (458)
|+.+|++.+++... +.+++++++++++. +..||+|.|+.+|+.
T Consensus 202 el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~ 281 (318)
T 3te6_A 202 ELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEA 281 (318)
T ss_dssp HHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHH
Confidence 99999999987632 14799999999985 227999999999999
Q ss_pred HHHHHhhh---------CCCCccHHHHHHHHHhhhc
Q 012719 415 ASVVAKMN---------GRDSICKADVEEVKALYLD 441 (458)
Q Consensus 415 a~~~a~~~---------~~~~it~~~v~~~~~~~~~ 441 (458)
|..+|... |...||.+.+.+++.-+++
T Consensus 282 A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~~ 317 (318)
T 3te6_A 282 AVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAIN 317 (318)
T ss_dssp HHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHHC
T ss_pred HHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHhc
Confidence 99999642 3356899999888886664
No 54
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.80 E-value=4.3e-21 Score=184.03 Aligned_cols=234 Identities=20% Similarity=0.269 Sum_probs=162.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS 106 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~ 106 (458)
.|..+|++++|++++++.+..++..+.. +...++++||+||||||||++|+++|..++ .|++.++.+++..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~v~~~~~~~ 82 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--VPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--CCCCCCCSCTTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEechHHHHH
Confidence 4567899999999999999887765432 334567899999999999999999999998 6788888888877
Q ss_pred hhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhh
Q 012719 107 SEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIK 185 (458)
Q Consensus 107 ~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 185 (458)
.+.+..+ .++..|+.+.. ..|+++|+||+|.+.+.+.......
T Consensus 83 ~~~~~~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~--------------------------------- 126 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKK---QAPSIIFIDEIDAIGKSRAAGGVVS--------------------------------- 126 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHH---SCSCEEEESCGGGTTC------------------------------------------
T ss_pred hhcchHHHHHHHHHHHHHh---cCCeEEEEeChhhhcccccccccCC---------------------------------
Confidence 7766654 35666766654 3488899999888876543210000
Q ss_pred hccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHh
Q 012719 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQ 265 (458)
Q Consensus 186 ~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~ 265 (458)
.+..
T Consensus 127 -------------~~~~--------------------------------------------------------------- 130 (268)
T 2r62_A 127 -------------GNDE--------------------------------------------------------------- 130 (268)
T ss_dssp --------------CCC---------------------------------------------------------------
T ss_pred -------------Cchh---------------------------------------------------------------
Confidence 0000
Q ss_pred hccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhcc---CCC-eEEEecCCccccc
Q 012719 266 MMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESS---LSP-IVIFATNRGICNI 341 (458)
Q Consensus 266 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~---~~~-i~il~tn~~~~~~ 341 (458)
....++.|++.++.. ..+ ++|.+|
T Consensus 131 ---------------------------------------------~~~~~~~ll~~l~~~~~~~~~v~vi~tt------- 158 (268)
T 2r62_A 131 ---------------------------------------------REQTLNQLLAEMDGFGSENAPVIVLAAT------- 158 (268)
T ss_dssp ---------------------------------------------SCSSTTTTTTTTTCSSCSCSCCEEEECB-------
T ss_pred ---------------------------------------------HHHHHHHHHHHhhCcccCCCCEEEEEec-------
Confidence 000122234444433 223 555566
Q ss_pred cCCCCCCCCCCChhHhh--hhc-ccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcC-CHHHHHHhhHHHHH
Q 012719 342 RGTDMNSPHGIPLDLLD--RLV-IIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDT-SLRHAVQLLYPASV 417 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g-~~r~a~~ll~~a~~ 417 (458)
+.+..+++.+++ |+. .+.+++++.++..++++..++..++. ++..++.++..+ .| +.|.+.++++.|..
T Consensus 159 -----n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~-~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 159 -----NRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLT-AGLAGADLANIINEAAL 231 (268)
T ss_dssp -----SCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSS-CSSCHHHHHHHHHHHHH
T ss_pred -----CCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 566778889988 774 45999999999999998887654432 222356677776 44 57888999999998
Q ss_pred HHhhhCCCCccHHHHHHHHHhhh
Q 012719 418 VAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 418 ~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
.|...+...|+.+++..++.-..
T Consensus 232 ~a~~~~~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 232 LAGRNNQKEVRQQHLKEAVERGI 254 (268)
T ss_dssp TTSSSCCCSCCHHHHHTSCTTCC
T ss_pred HHHHhccCCcCHHHHHHHHHHHh
Confidence 88777777899999998876443
No 55
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.79 E-value=2.2e-17 Score=166.11 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=108.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC----CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhc--ccccCCCCHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL----SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV--IIRTQIYGPAE 372 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~----~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~--~i~~~~~~~~e 372 (458)
.|++|||++.++++.++.|++++++.+ .. .+|+++|.. .....+.+.+.+||. .+.|++++.++
T Consensus 127 ~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~---------~~~~~l~~~~~~r~~~~~i~~~pl~~~~ 197 (389)
T 1fnn_A 127 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND---------AVLNNLDPSTRGIMGKYVIRFSPYTKDQ 197 (389)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST---------HHHHTSCHHHHHHHTTCEEECCCCBHHH
T ss_pred EEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc---------hHHHHhCHHhhhcCCCceEEeCCCCHHH
Confidence 799999999999999999999998754 34 566666321 111567889999997 47999999999
Q ss_pred HHHHHHHHHHh--cCCccCHHHHHHHHHHhh--------cCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 373 MIQILAIRAQV--EEIVLDEESLAHLGEIAR--------DTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 373 ~~~il~~~~~~--~~~~i~~~~l~~i~~~~~--------~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+.+++..++.. ....+++++++.+++.+. .|++|.++++++.++..|...+...|+.++|..++.-.
T Consensus 198 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 198 IFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 99999998875 234799999999999884 58999999999999999988888889999999887644
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=6.5e-18 Score=169.89 Aligned_cols=127 Identities=26% Similarity=0.302 Sum_probs=100.9
Q ss_pred eEEEEcccchhcHHH-HHH-HHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhh-cccccCCCCHHHHHH
Q 012719 300 GVLFIDEVHMLDMEC-FSY-LNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL-VIIRTQIYGPAEMIQ 375 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~-~~~-Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~ 375 (458)
.|++|||+|.+.... ++. +..+++.. .. .+|+++|.. .....+.+.+++|+ ..+.|++++.+++.+
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~---------~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~ 204 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI---------NVRDYMEPRVLSSLGPSVIFKPYDAEQLKF 204 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST---------TTTTTSCHHHHHTCCCEEEECCCCHHHHHH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC---------chHhhhCHHHHhcCCCeEEECCCCHHHHHH
Confidence 399999999997652 455 55555444 34 566666421 22367889999996 666999999999999
Q ss_pred HHHHHHHh--cCCccCHHHHHHHHHHhhc---CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 376 ILAIRAQV--EEIVLDEESLAHLGEIARD---TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 376 il~~~~~~--~~~~i~~~~l~~i~~~~~~---g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
++..++.. .+..+++++++.+++.+ . |++|.++++++.+..+|. +...|+.++|..++.-.
T Consensus 205 il~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 205 ILSKYAEYGLIKGTYDDEILSYIAAIS-AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHTSCTTSCCSHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcCHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 99998874 45689999999999999 7 999999999999998886 66789999999988754
No 57
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.78 E-value=1e-17 Score=161.49 Aligned_cols=227 Identities=26% Similarity=0.311 Sum_probs=161.5
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHh-------cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIRQ-------KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~~-------~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
|..+|++++|+++++..+..+...... +...+++++|+||||||||+++++++..++ .+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHH
Confidence 778999999999999999888765532 123346799999999999999999999997 67999988877766
Q ss_pred hhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhh
Q 012719 108 EVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKE 186 (458)
Q Consensus 108 ~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
+.+... .+...|+.+.. ..|+++++||++.+...+.... .....
T Consensus 113 ~~~~~~~~i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~-~~~~~------------------------------- 157 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGV-GGGND------------------------------- 157 (278)
T ss_dssp TTTHHHHHHHHHHHHHHT---SCSEEEEEETHHHHHCC---------CH-------------------------------
T ss_pred HhhHHHHHHHHHHHHHHh---cCCcEEehhhhHhhhccccccc-CCcch-------------------------------
Confidence 666655 47778887764 3489999999988764432100 00000
Q ss_pred ccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCHhhHHHHhcCCCChhhHHHHHHhh
Q 012719 187 KVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQM 266 (458)
Q Consensus 187 ~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l~~l~~~~~~~~g~adl~~l~~~~ 266 (458)
T Consensus 158 -------------------------------------------------------------------------------- 157 (278)
T 1iy2_A 158 -------------------------------------------------------------------------------- 157 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHhhccccccceEEEEcccchhcHHHHHHHHHHhhccC--CC-eEEEecCCccccccC
Q 012719 267 MKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSL--SP-IVIFATNRGICNIRG 343 (458)
Q Consensus 267 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~--~~-i~il~tn~~~~~~~~ 343 (458)
. ..+..+.++..|+... .. +++.++
T Consensus 158 ----------~---------------------------------~~~~~~~ll~~lsgg~~~~~~i~~a~t--------- 185 (278)
T 1iy2_A 158 ----------E---------------------------------REQTLNQLLVEMDGFEKDTAIVVMAAT--------- 185 (278)
T ss_dssp ----------H---------------------------------HHHHHHHHHHHHTTCCTTCCEEEEEEE---------
T ss_pred ----------H---------------------------------HHHHHHHHHHHHhCCCCCCCEEEEEec---------
Confidence 0 0011122333333322 22 445555
Q ss_pred CCCCCCCCCChhHhh--hhcc-cccCCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHhhcCCH-HHHHHhhHHHHHH
Q 012719 344 TDMNSPHGIPLDLLD--RLVI-IRTQIYGPAEMIQILAIRAQVEEIVLDEES-LAHLGEIARDTSL-RHAVQLLYPASVV 418 (458)
Q Consensus 344 ~~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~i~~~~~~g~~-r~a~~ll~~a~~~ 418 (458)
+.|..+.+++++ |+.. +.+++++.++..+|++..++. ..+++++ +..++... .|.. |.+.++++.|...
T Consensus 186 ---~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~ 259 (278)
T 1iy2_A 186 ---NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRT-PGFVGADLENLLNEAALL 259 (278)
T ss_dssp ---SCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHH
T ss_pred ---CCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 667889999987 6654 499999999999999977654 4555544 77888888 6654 8888999999988
Q ss_pred HhhhCCCCccHHHHHHHH
Q 012719 419 AKMNGRDSICKADVEEVK 436 (458)
Q Consensus 419 a~~~~~~~it~~~v~~~~ 436 (458)
|...+...||.+|+++++
T Consensus 260 a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 260 AAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHTTCCSBCHHHHHHHT
T ss_pred HHHhCCCCcCHHHHHHHh
Confidence 887777889999999875
No 58
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.7e-18 Score=169.08 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=80.9
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILA 378 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 378 (458)
+|+||||+|.|+.+++|+|++.||+|+.. ++|++| +++.+++|+++|| .+.|.+++++++.++|+
T Consensus 84 kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t------------~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 84 KYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNT------------RRWHYLLPTIKSR--VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEE------------SCGGGSCHHHHTT--SEEEECCCCHHHHHHHH
T ss_pred eEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEE------------CChHhChHHHHce--eEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999887 888888 6778999999999 88999999999999999
Q ss_pred HHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHH
Q 012719 379 IRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYP 414 (458)
Q Consensus 379 ~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~ 414 (458)
.++ .++++++ ..+ .|++|.|+++++.
T Consensus 150 ~~~-----~i~~~~~----~~~-~g~~~~al~~l~~ 175 (305)
T 2gno_A 150 EKI-----GDLWEEL----PLL-ERDFKTALEAYKL 175 (305)
T ss_dssp HHH-----TTHHHHC----GGG-GTCHHHHHHHHHH
T ss_pred HHh-----CCCHHHH----HHH-CCCHHHHHHHHHH
Confidence 887 3667766 446 8999999988863
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.78 E-value=3.3e-18 Score=172.15 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=66.0
Q ss_pred CCChhHhhhh-cccccCCCCHHHHHHHHHH----H-------H--HhcCCccCHHHHHHHHHHhhc--CCHHHHHHhhHH
Q 012719 351 GIPLDLLDRL-VIIRTQIYGPAEMIQILAI----R-------A--QVEEIVLDEESLAHLGEIARD--TSLRHAVQLLYP 414 (458)
Q Consensus 351 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~----~-------~--~~~~~~i~~~~l~~i~~~~~~--g~~r~a~~ll~~ 414 (458)
.+.|+|++|| .++.|++++.+++..|+.. . . ...++.++++++++|+..+.. |++|.+.++++.
T Consensus 255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 255 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred CCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 5789999999 4559999999999999962 1 1 123467999999999998732 999999999998
Q ss_pred HHHHHhhhC------CCCccHHHHHHHHH
Q 012719 415 ASVVAKMNG------RDSICKADVEEVKA 437 (458)
Q Consensus 415 a~~~a~~~~------~~~it~~~v~~~~~ 437 (458)
+...+.... .-.||.++|..+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 335 FCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 876543321 12589998887554
No 60
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=3.9e-18 Score=179.44 Aligned_cols=126 Identities=19% Similarity=0.249 Sum_probs=93.4
Q ss_pred eEEEEcccchhcHH----HHHHHHHHhhccC---------------CC-eEEEecCCccccccCCCCCCCCCCChhHhhh
Q 012719 300 GVLFIDEVHMLDME----CFSYLNRALESSL---------------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDR 359 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~----~~~~Ll~~lE~~~---------------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR 359 (458)
+|+||||++.++.+ .++.|++.|++.. .. ++|.+| +.+..++++|++|
T Consensus 177 ~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt------------N~~~~l~~aL~~R 244 (543)
T 3m6a_A 177 PVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA------------NNLATIPGPLRDR 244 (543)
T ss_dssp EEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC------------SSTTTSCHHHHHH
T ss_pred CEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc------------CccccCCHHHHhh
Confidence 79999999999877 5688999987532 23 566666 5677999999999
Q ss_pred hcccccCCCCHHHHHHHHHHHHH-----h-----cCCccCHHHHHHHHHHh-hcCCHHHHHHhhHHHHHHHhhh------
Q 012719 360 LVIIRTQIYGPAEMIQILAIRAQ-----V-----EEIVLDEESLAHLGEIA-RDTSLRHAVQLLYPASVVAKMN------ 422 (458)
Q Consensus 360 ~~~i~~~~~~~~e~~~il~~~~~-----~-----~~~~i~~~~l~~i~~~~-~~g~~r~a~~ll~~a~~~a~~~------ 422 (458)
|.++.|++|+.++..+|++..+. . .++.++++++..++... ..+++|.+.+.++.+...+...
T Consensus 245 ~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~ 324 (543)
T 3m6a_A 245 MEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEER 324 (543)
T ss_dssp EEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 99889999999999999987652 2 24578999999998744 3478888888777766554432
Q ss_pred CCCCccHHHHHHHHH
Q 012719 423 GRDSICKADVEEVKA 437 (458)
Q Consensus 423 ~~~~it~~~v~~~~~ 437 (458)
+...||.+++..+++
T Consensus 325 ~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 325 KRITVTEKNLQDFIG 339 (543)
T ss_dssp SCCEECTTTTHHHHC
T ss_pred cceecCHHHHHHHhC
Confidence 334699999998876
No 61
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.75 E-value=1.6e-17 Score=172.12 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=105.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-----------CCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcc-cccCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-----------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI-IRTQI 367 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~-i~~~~ 367 (458)
+|+||||+++++++.++.|+.+|++. +.+++|++||+. .....+.+++++||.. +.+++
T Consensus 111 ~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~l---------pe~~~~~~aLldRF~~~i~v~~ 181 (500)
T 3nbx_X 111 EIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNEL---------PEADSSLEALYDRMLIRLWLDK 181 (500)
T ss_dssp SEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSC---------CCTTCTTHHHHTTCCEEEECCS
T ss_pred eeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccC---------CCccccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999852 334778899743 2233466899999965 48888
Q ss_pred CCH-HHHHHHHHHHH-----------------------HhcCCccCHHHHHHHHHHhh---------cCCHHHHHHhhHH
Q 012719 368 YGP-AEMIQILAIRA-----------------------QVEEIVLDEESLAHLGEIAR---------DTSLRHAVQLLYP 414 (458)
Q Consensus 368 ~~~-~e~~~il~~~~-----------------------~~~~~~i~~~~l~~i~~~~~---------~g~~r~a~~ll~~ 414 (458)
++. ++...|+.... ...++.++++++++++++.. ..++|.++.+++.
T Consensus 182 p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~ 261 (500)
T 3nbx_X 182 VQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRL 261 (500)
T ss_dssp CCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHH
T ss_pred hhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHH
Confidence 886 66777776433 22367899999999998762 2489999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHhhhch
Q 012719 415 ASVVAKMNGRDSICKADVEEVKALYLDA 442 (458)
Q Consensus 415 a~~~a~~~~~~~it~~~v~~~~~~~~~~ 442 (458)
|.++|...|+..|+++||. ++...+..
T Consensus 262 A~A~A~l~gr~~Vt~eDv~-~a~~vL~h 288 (500)
T 3nbx_X 262 LQASAFFSGRSAVAPVDLI-LLKDCLWY 288 (500)
T ss_dssp HHHHHHHTTCSBCCGGGGG-GGGGTSCS
T ss_pred HHHHHhhcCCccccchHHH-HHHhhhhc
Confidence 9999999999999999999 65555544
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=8.6e-17 Score=161.20 Aligned_cols=131 Identities=21% Similarity=0.142 Sum_probs=104.8
Q ss_pred ceEEEEcccchhc----HHHHHHHHHHhhcc-CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhh--cccccCCCCH
Q 012719 299 PGVLFIDEVHMLD----MECFSYLNRALESS-LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL--VIIRTQIYGP 370 (458)
Q Consensus 299 ~~Vl~IDE~~~l~----~~~~~~Ll~~lE~~-~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~--~~i~~~~~~~ 370 (458)
+.|++|||++.+. .+.+..|++.++.. ..+ .+|++++.. .....+.+.+++|| ..+.|++++.
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~---------~~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV---------KFVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG---------GGGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC---------ChHhhhCHHHhccCCCeeEEeCCCCH
Confidence 3799999999996 56778888888653 334 566666421 11245778899999 4679999999
Q ss_pred HHHHHHHHHHHHhc--CCccCHHHHHHHHHHhhc---CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 371 AEMIQILAIRAQVE--EIVLDEESLAHLGEIARD---TSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 371 ~e~~~il~~~~~~~--~~~i~~~~l~~i~~~~~~---g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+++.+++..++... ...+++++++.++..+ . |++|.++++++.++..|...+...||.++|+.++.-.
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALA-AREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999999887643 3679999999999998 6 9999999999999999887788889999999887644
No 63
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.74 E-value=2.6e-17 Score=164.90 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=69.2
Q ss_pred ccchHHHHHHHHHHHHHH----Hhc------ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch-hhh
Q 012719 42 FVGQVEAREAAGLVVDMI----RQK------KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS-EVK 110 (458)
Q Consensus 42 liG~~~~~~~l~~l~~~~----~~~------~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~-~~~ 110 (458)
++||+.+++.+...+... ..+ ..++.++||+||||||||++|+++|+.++ .||+.++.+++... +.|
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~--~~~~~~~~~~l~~~~~~g 94 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD--VPFTMADATTLTEAGYVG 94 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEechHHhccccccc
Confidence 699999999887666322 111 12467999999999999999999999997 78999988877643 666
Q ss_pred hhH--HHHHHHHHHHhc-cccCCceEEEccccccCccc
Q 012719 111 KTE--ILMENFRRAIGL-RIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 111 ~~~--~l~~~f~~a~~~-~~~~~~ii~iDE~d~l~~~~ 145 (458)
... .+...|+.+... ....++++|+||++.+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~ 132 (363)
T 3hws_A 95 EDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132 (363)
T ss_dssp HHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCS
T ss_pred ccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccc
Confidence 642 355555543211 11225666666666655443
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=2.6e-17 Score=160.82 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=90.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC------------CCeEEEecCCccccccCC-----CCCC---------CCCCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL------------SPIVIFATNRGICNIRGT-----DMNS---------PHGIP 353 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~------------~~i~il~tn~~~~~~~~~-----~~~~---------~~~l~ 353 (458)
+|+||||++.++++.++.|+++|++.. ..++|++||.+...+... +..+ ...+.
T Consensus 121 ~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 200 (311)
T 4fcw_A 121 SVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 200 (311)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSC
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999864 236888887632111000 0001 34678
Q ss_pred hhHhhhhc-ccccCCCCHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHhh--cCCHHHHHHhhHHHHHH
Q 012719 354 LDLLDRLV-IIRTQIYGPAEMIQILAIRAQV---------EEIVLDEESLAHLGEIAR--DTSLRHAVQLLYPASVV 418 (458)
Q Consensus 354 ~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~i~~~~~--~g~~r~a~~ll~~a~~~ 418 (458)
++|++||. ++.|.|++.+++..|+...+.. ..+.++++++++|++.+- .|+.|.+.++++.+...
T Consensus 201 ~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 201 PEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred HHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 99999995 5599999999999999876543 246799999999999874 48899888888866553
No 65
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=4.2e-17 Score=156.60 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=50.6
Q ss_pred HhhhcccCCCCCccCCCCCCccccccchHHHHHHHHH----HHHHHHh-cccCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 18 VAAHTHIKGLGLEANGNAVPLAAGFVGQVEAREAAGL----VVDMIRQ-KKMAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~l~~liG~~~~~~~l~~----l~~~~~~-~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.+.+......|+++..-.....++++|+......+.. +...+.. +..+++++||+||||||||++|+++|+.++
T Consensus 11 ~~~~~~~~~fg~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~- 89 (272)
T 1d2n_A 11 GSTMDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN- 89 (272)
T ss_dssp --------------CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-
T ss_pred CCccccCCCCCCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-
Confidence 3444445556666654444556788998766544433 4555543 244557999999999999999999999988
Q ss_pred CccEEEecCCc
Q 012719 93 KVPFCPMVGSE 103 (458)
Q Consensus 93 ~~p~i~l~~~~ 103 (458)
.||+.++.++
T Consensus 90 -~~~~~i~~~~ 99 (272)
T 1d2n_A 90 -FPFIKICSPD 99 (272)
T ss_dssp -CSEEEEECGG
T ss_pred -CCEEEEeCHH
Confidence 6688876654
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=5.7e-17 Score=177.55 Aligned_cols=117 Identities=16% Similarity=0.240 Sum_probs=83.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-----------CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhh-cccccC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-----------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL-VIIRTQ 366 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~-~~i~~~ 366 (458)
+|+||||++.++++.++.|+++||+. +.. ++|++||.+..............++|+|++|| .++.|+
T Consensus 581 ~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 581 SVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp SEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred eEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC
Confidence 89999999999999999999999973 223 78888864321000000000012789999999 566999
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHh--hcCCHHHHHHhhHHHH
Q 012719 367 IYGPAEMIQILAIRAQV---------EEIVLDEESLAHLGEIA--RDTSLRHAVQLLYPAS 416 (458)
Q Consensus 367 ~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~i~~~~--~~g~~r~a~~ll~~a~ 416 (458)
+++.+++.+|+...+.. ..+.++++++++|++.+ ..|+.|.+.+.++.+.
T Consensus 661 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 661 SLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 99999999999876653 24679999999998753 2477887777777553
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=1.2e-16 Score=175.17 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=87.1
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCC--CCC-----------CCCCCh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTD--MNS-----------PHGIPL 354 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~--~~~-----------~~~l~~ 354 (458)
+|+||||++.++++.++.|+++||+.. .. ++|+++|.....+.... +.. ...+.|
T Consensus 559 ~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 638 (758)
T 1r6b_X 559 AVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTP 638 (758)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCH
T ss_pred cEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCH
Confidence 999999999999999999999999752 23 68888886432111000 000 016789
Q ss_pred hHhhhh-cccccCCCCHHHHHHHHHHHHHhc---------CCccCHHHHHHHHHHhhcC--CHHHHHHhhHHHHH
Q 012719 355 DLLDRL-VIIRTQIYGPAEMIQILAIRAQVE---------EIVLDEESLAHLGEIARDT--SLRHAVQLLYPASV 417 (458)
Q Consensus 355 ~l~sR~-~~i~~~~~~~~e~~~il~~~~~~~---------~~~i~~~~l~~i~~~~~~g--~~r~a~~ll~~a~~ 417 (458)
+|++|| .++.|++++.+++..|+...+.+. .+.++++++++|++.+-.+ +.|.+.++++.+..
T Consensus 639 ~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 639 EFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 999999 556999999999999998876532 3579999999999876444 47888877776654
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.71 E-value=8.3e-17 Score=153.91 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=91.2
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc-----------CCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc--ccc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS-----------LSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI--IRT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~-----------~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~--i~~ 365 (458)
++|||||++.++.+.++.|++++++. +.. .+|++||+..... -....+.++|.+||.. +.+
T Consensus 102 ~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~-----~~~~~~~~~L~~Rl~~~~i~l 176 (265)
T 2bjv_A 102 GTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM-----VNEGTFRADLLDALAFDVVQL 176 (265)
T ss_dssp SEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH-----HHHTSSCHHHHHHHCSEEEEC
T ss_pred cEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH-----HHcCCccHHHHHhhcCcEEeC
Confidence 89999999999999999999999964 123 6777886431100 0123578999999954 588
Q ss_pred CCCCH--HHHHHHHH----HHHHhcCC----ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHH
Q 012719 366 QIYGP--AEMIQILA----IRAQVEEI----VLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADV 432 (458)
Q Consensus 366 ~~~~~--~e~~~il~----~~~~~~~~----~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v 432 (458)
+++++ +++..++. ..++..+. .+++++++.|....-.|++|.+.++++.+...+ ....|+.+++
T Consensus 177 p~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 177 PPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 88875 66665544 34444444 689999999998765799999999999887665 2345777665
No 69
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=6.2e-16 Score=150.25 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhH-HHHHHHHHHHhc-cccCCceEEEcccc
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTE-ILMENFRRAIGL-RIKENKEVYEGEVT 139 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~-~l~~~f~~a~~~-~~~~~~ii~iDE~d 139 (458)
+..+++++||+||||||||++|+++|+.++ .+|+.++.+++.+.++|..+ .+++.|+.+... +...|+++|+||+|
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT--CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 344568999999999999999999999998 78999999999999999987 588999888422 24569999999999
Q ss_pred ccCcccc
Q 012719 140 ELSPEET 146 (458)
Q Consensus 140 ~l~~~~~ 146 (458)
++++.+.
T Consensus 110 ~~~~~~~ 116 (293)
T 3t15_A 110 AGAGRMG 116 (293)
T ss_dssp -------
T ss_pred hhcCCCC
Confidence 9987544
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=1.1e-15 Score=169.28 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=89.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC------------CCeEEEecCCccccccCC--C------CC------CCCCCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL------------SPIVIFATNRGICNIRGT--D------MN------SPHGIP 353 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~------------~~i~il~tn~~~~~~~~~--~------~~------~~~~l~ 353 (458)
+||||||++.++++.++.|+++|++.. ..++|++||.+...+... + +. ....+.
T Consensus 662 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~ 741 (854)
T 1qvr_A 662 SVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 741 (854)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred eEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCC
Confidence 899999999999999999999999763 236888888643211100 0 00 134678
Q ss_pred hhHhhhhc-ccccCCCCHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHhh--cCCHHHHHHhhHHHHH
Q 012719 354 LDLLDRLV-IIRTQIYGPAEMIQILAIRAQV---------EEIVLDEESLAHLGEIAR--DTSLRHAVQLLYPASV 417 (458)
Q Consensus 354 ~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~i~~~~~--~g~~r~a~~ll~~a~~ 417 (458)
|+|++||. ++.|.|++.+++..|+...+.. ..+.++++++++|+..+- .|++|.+.++++.+..
T Consensus 742 ~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 742 PEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 99999994 5589999999999999876542 235799999999999884 4889988888877654
No 71
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=2.1e-15 Score=155.96 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=79.4
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAI 379 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 379 (458)
+||||| .+.++++.|++.|+... -.+|.+||+.. +.....+++++++||..+.|++|+.+++..||+.
T Consensus 269 ~iLfiD----~~~~a~~~L~~~L~~g~-v~vI~at~~~e-------~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~ 336 (468)
T 3pxg_A 269 IILFID----AAIDASNILKPSLARGE-LQCIGATTLDE-------YRKYIEKDAALERRFQPIQVDQPSVDESIQILQG 336 (468)
T ss_dssp CEEEEC----C--------CCCTTSSS-CEEEEECCTTT-------THHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred eEEEEe----CchhHHHHHHHhhcCCC-EEEEecCCHHH-------HHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHH
Confidence 899999 56678899999998653 25565663210 0000257899999999999999999999999998
Q ss_pred HHHh----cCCccCHHHHHHHHHHhhcC-----CHHHHHHhhHHHHHHHhhhCC
Q 012719 380 RAQV----EEIVLDEESLAHLGEIARDT-----SLRHAVQLLYPASVVAKMNGR 424 (458)
Q Consensus 380 ~~~~----~~~~i~~~~l~~i~~~~~~g-----~~r~a~~ll~~a~~~a~~~~~ 424 (458)
.+.. .++.++++++..++.++.+. -++.++.+++.+...+.....
T Consensus 337 ~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~ 390 (468)
T 3pxg_A 337 LRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSF 390 (468)
T ss_dssp TTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccC
Confidence 7765 68899999999999987221 267899999988876665544
No 72
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.64 E-value=5.6e-15 Score=157.57 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=101.8
Q ss_pred ceEEEEcccchhcHHHHHHHHHHhhccC---------------------CC-eEEEecCCccccccCCCCCCCCCCChhH
Q 012719 299 PGVLFIDEVHMLDMECFSYLNRALESSL---------------------SP-IVIFATNRGICNIRGTDMNSPHGIPLDL 356 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~---------------------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l 356 (458)
+|+|||||++.|++..++.|+++||+.. .+ .+|++||+. ....++++|
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~----------~~~~l~~~l 271 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD----------TVDKMHPAL 271 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH----------HHHHSCHHH
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH----------HHhhcCHHH
Confidence 3899999999999999999999999431 12 477777642 124689999
Q ss_pred hhhhcc----cccC---CCCHHHHHHHHHHHHHhc-----CCccCHHHHHHHHHHhh--cC-------CHHHHHHhhHHH
Q 012719 357 LDRLVI----IRTQ---IYGPAEMIQILAIRAQVE-----EIVLDEESLAHLGEIAR--DT-------SLRHAVQLLYPA 415 (458)
Q Consensus 357 ~sR~~~----i~~~---~~~~~e~~~il~~~~~~~-----~~~i~~~~l~~i~~~~~--~g-------~~r~a~~ll~~a 415 (458)
++||.. +.|+ +.+++++..+++..++.. ...++++++..|++.+. .| ++|.+.++++.|
T Consensus 272 ~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 272 RSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred HHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 999953 3443 335667777776665532 25799999999998763 34 599999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHHHh
Q 012719 416 SVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 416 ~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
..+|...++..|+.+||.+++..
T Consensus 352 ~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 352 GDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHhcCcccccHHHHHHHHHh
Confidence 99999999999999999999864
No 73
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.64 E-value=1.7e-17 Score=182.09 Aligned_cols=204 Identities=18% Similarity=0.258 Sum_probs=145.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH--------HhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 34 NAVPLAAGFVGQVEAREAAGLVVDMI--------RQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 34 ~~~~~l~~liG~~~~~~~l~~l~~~~--------~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.+...|++++|++++++.+..++.+. ..+..++.++||+||||||||++|+++|..++ .+|+.++++++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 46678999999999999887665321 22345668899999999999999999999998 679999999999
Q ss_pred chhhhhhH-HHHHHHHHHHhccccCCceEEEccccccCccccCCcc---CCchhhHHHHHHhhccccccccccCChhHHH
Q 012719 106 SSEVKKTE-ILMENFRRAIGLRIKENKEVYEGEVTELSPEETESIT---GGYGKSISHVIIGLKTVKGTKQLKLDPTIYD 181 (458)
Q Consensus 106 ~~~~~~~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~l~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 181 (458)
+.|+|..+ .++.+|+.+.... ||++|+||+|++++.+..... ....+.+.+++..|.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~---p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld---------------- 609 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAA---PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD---------------- 609 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHC---SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----------------
T ss_pred hhhcCccHHHHHHHHHHHHhcC---CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHh----------------
Confidence 99999987 6999999988644 999999999999988765321 122344445543331
Q ss_pred HHhhhccccCCeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----H---hhHHHHhcCCC
Q 012719 182 ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----L---HDLDAANARPQ 254 (458)
Q Consensus 182 ~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l---~~l~~~~~~~~ 254 (458)
.+ .....++|.++||.+..++.+..+.+||+. .++++.|+ ...|..+++... + .+++.++..+.
T Consensus 610 ~~-----~~~~~v~vI~tTN~~~~ld~allrpgRf~~--~i~~~~p~--~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~ 680 (806)
T 1ypw_A 610 GM-----STKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPD--EKSRVAILKANLRKSPVAKDVDLEFLAKMTN 680 (806)
T ss_dssp -----------CCBCCCCCBSCGGGSCTTSSGGGTTS--CCCCCCCC--CSHHHHHTTTTTSCC----CCCCSCSCGGGS
T ss_pred cc-----cccCCeEEEEecCCcccCCHHHhCccccCc--eeecCCCC--HHHHHHHHHHHhccCCCCcccCHHHHHHhcc
Confidence 11 122345566777777777766666668865 55666664 445777776543 1 15566677788
Q ss_pred Ch--hhHHHHHHhhc
Q 012719 255 GG--QDILSLMGQMM 267 (458)
Q Consensus 255 g~--adl~~l~~~~~ 267 (458)
|| +|+..++....
T Consensus 681 g~sgadi~~l~~~a~ 695 (806)
T 1ypw_A 681 GFSGADLTEICQRAC 695 (806)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 87 88888876654
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.63 E-value=1.6e-15 Score=148.17 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=92.3
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|+|||||++.|+.+.+..|++++++.. .+ .+|++||+.... .-....+.++|.+|+..+ .+
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~-----~v~~g~fr~~L~~Rl~~~~i~l 172 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAE-----EVSAGRFRQDLYYRLNVVAIEM 172 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHH-----HHHHTSSCHHHHHHHSSEEEEC
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHH-----HHHhCCcHHHHHhhcCeeEEec
Confidence 899999999999999999999999753 23 577788643110 001245778899999544 78
Q ss_pred CCCC--HHHHHHHHHHHH----HhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHH
Q 012719 366 QIYG--PAEMIQILAIRA----QVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVE 433 (458)
Q Consensus 366 ~~~~--~~e~~~il~~~~----~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~ 433 (458)
+|+. .+++..++...+ ...+ ..+++++++.+..++-.|++|.+.++++.+...+ ....|+.+++.
T Consensus 173 PpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 173 PSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred cCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 8888 566666655433 3333 5799999999999876799999999999888765 23457777664
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=3.5e-16 Score=165.99 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=102.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-------------CC-eEEEecCCccccccCC-CCCCCCCCChhHhhhhc-cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-------------SP-IVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLV-II 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-------------~~-i~il~tn~~~~~~~~~-~~~~~~~l~~~l~sR~~-~i 363 (458)
||+||||++.++++.++.|+.+||+.. .+ .+|.++|+..-..... .....-.|+++|+|||. ++
T Consensus 393 gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~ 472 (595)
T 3f9v_A 393 GIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIF 472 (595)
T ss_dssp SEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred CcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEE
Confidence 999999999999999999999999642 23 5777787642100000 01112278999999995 44
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-------------------------CCccCHHHHHHHHHHh--------------hcCC
Q 012719 364 RTQIYGPAEMIQILAIRAQVE-------------------------EIVLDEESLAHLGEIA--------------RDTS 404 (458)
Q Consensus 364 ~~~~~~~~e~~~il~~~~~~~-------------------------~~~i~~~~l~~i~~~~--------------~~g~ 404 (458)
.+.+++.++...++....... .-.+++++.+.|.+.. ..++
T Consensus 473 ~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s 552 (595)
T 3f9v_A 473 ILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILIT 552 (595)
T ss_dssp EECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSS
T ss_pred EeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCcccccc
Confidence 555555555444444443321 2267888888888872 2568
Q ss_pred HHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhch
Q 012719 405 LRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDA 442 (458)
Q Consensus 405 ~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~ 442 (458)
+|.+..+++.|.++|.+.++..|+.+||.+|+.++-..
T Consensus 553 ~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 553 PRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp TTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876543
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.60 E-value=1.3e-14 Score=159.02 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=97.2
Q ss_pred eEEEEcccchh---------cHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCH
Q 012719 300 GVLFIDEVHML---------DMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l---------~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~ 370 (458)
+||||||+|.+ ..++.+.|..+++... -.+|.+||... +.....+.++|.+||..+.+++++.
T Consensus 280 ~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~-~~~I~at~~~~-------~~~~~~~d~aL~~Rf~~i~v~~p~~ 351 (758)
T 1r6b_X 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK-IRVIGSTTYQE-------FSNIFEKDRALARRFQKIDITEPSI 351 (758)
T ss_dssp EEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCC-CEEEEEECHHH-------HHCCCCCTTSSGGGEEEEECCCCCH
T ss_pred eEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCC-eEEEEEeCchH-------HhhhhhcCHHHHhCceEEEcCCCCH
Confidence 77888888877 4556677777766543 24555664321 0123356678999999899999999
Q ss_pred HHHHHHHHHHHHh----cCCccCHHHHHHHHHHhhcC------CHHHHHHhhHHHHHHHhh----hCCCCccHHHHHHHH
Q 012719 371 AEMIQILAIRAQV----EEIVLDEESLAHLGEIARDT------SLRHAVQLLYPASVVAKM----NGRDSICKADVEEVK 436 (458)
Q Consensus 371 ~e~~~il~~~~~~----~~~~i~~~~l~~i~~~~~~g------~~r~a~~ll~~a~~~a~~----~~~~~it~~~v~~~~ 436 (458)
+++.+|++..+.. .++.++++++..++..+ .+ .+..++.+++.+...+.. .+...|+.+++..++
T Consensus 352 ~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s-~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA-VKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-HHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 9999999877654 67889999999999887 43 366889999988776655 235679999999988
Q ss_pred Hhhh
Q 012719 437 ALYL 440 (458)
Q Consensus 437 ~~~~ 440 (458)
.-+.
T Consensus 431 ~~~~ 434 (758)
T 1r6b_X 431 ARIA 434 (758)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 7553
No 77
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.60 E-value=5.4e-15 Score=146.73 Aligned_cols=130 Identities=16% Similarity=0.034 Sum_probs=111.0
Q ss_pred eEEEEcccch-hcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHHHHHHHH
Q 012719 300 GVLFIDEVHM-LDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQIL 377 (458)
Q Consensus 300 ~Vl~IDE~~~-l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 377 (458)
+|++|||+|. ++.+.+++|++++|+|+.. ++|++++... .......+.+++.|||..+.|.+++.+++.+.+
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~------~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLS------KAQENAAWFTALANRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCC------TTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCC------hhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence 8999999999 9999999999999999877 6777763210 001135688999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhh
Q 012719 378 AIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALY 439 (458)
Q Consensus 378 ~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~ 439 (458)
+.+++.+|+.+++++++.|++.+ +||+|.+.+.|+.+..++ +.+.||.++|+..++..
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~-~gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCY-EGNLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSS-TTCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-chHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 99999999999999999999999 999999999999887664 34579999999877643
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.58 E-value=1.3e-14 Score=160.65 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=75.2
Q ss_pred eEEEEcccchhc--------HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHH
Q 012719 300 GVLFIDEVHMLD--------MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPA 371 (458)
Q Consensus 300 ~Vl~IDE~~~l~--------~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~ 371 (458)
.||||||+|.+. .++.+.|..+++..... +|.+||.... .. ..+.++|++||..+.+++++.+
T Consensus 265 ~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~-~I~at~~~~~-------~~-~~~d~aL~rRf~~i~l~~p~~~ 335 (854)
T 1qvr_A 265 VILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELR-LIGATTLDEY-------RE-IEKDPALERRFQPVYVDEPTVE 335 (854)
T ss_dssp EEEEECCC-------------------HHHHHTTCCC-EEEEECHHHH-------HH-HTTCTTTCSCCCCEEECCCCHH
T ss_pred eEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeE-EEEecCchHH-------hh-hccCHHHHhCCceEEeCCCCHH
Confidence 566677777665 45667788888765443 4445532110 00 2467889999999999999999
Q ss_pred HHHHHHHHHHH----hcCCccCHHHHHHHHHHhhcC------CHHHHHHhhHHHHHHHhhh
Q 012719 372 EMIQILAIRAQ----VEEIVLDEESLAHLGEIARDT------SLRHAVQLLYPASVVAKMN 422 (458)
Q Consensus 372 e~~~il~~~~~----~~~~~i~~~~l~~i~~~~~~g------~~r~a~~ll~~a~~~a~~~ 422 (458)
++..|++..+. ..++.++++++..++.++ ++ -+..++.+++.+...+...
T Consensus 336 e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls-~r~i~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 336 ETISILRGLKEKYEVHHGVRISDSAIIAAATLS-HRYITERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH-HHHCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH-hhhcccccChHHHHHHHHHHHHHHHhh
Confidence 99999986655 447899999999999987 43 2788999999888766544
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=6.7e-14 Score=141.72 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=96.5
Q ss_pred eEEEEcccchhc------HHHHHHHHHHhhccC-----CCe-EEEecCCccccccCCCCCCCCCCC---hhHhhhhc-cc
Q 012719 300 GVLFIDEVHMLD------MECFSYLNRALESSL-----SPI-VIFATNRGICNIRGTDMNSPHGIP---LDLLDRLV-II 363 (458)
Q Consensus 300 ~Vl~IDE~~~l~------~~~~~~Ll~~lE~~~-----~~i-~il~tn~~~~~~~~~~~~~~~~l~---~~l~sR~~-~i 363 (458)
.|++|||+|.+. .+.+..|++++++.+ .++ +|++++.. .....+. +.+.+|+. .+
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~---------~~~~~l~~~~~~~~~~~~~~i 210 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDV---------RALSYMREKIPQVESQIGFKL 210 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEET---------HHHHHHHHHCHHHHTTCSEEE
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccc---------cHHHHHhhhcchhhhhcCCee
Confidence 799999999986 377788888887654 453 44455211 0001122 45666653 37
Q ss_pred ccCCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHhhc------CCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHH
Q 012719 364 RTQIYGPAEMIQILAIRAQVEE--IVLDEESLAHLGEIARD------TSLRHAVQLLYPASVVAKMNGRDSICKADVEEV 435 (458)
Q Consensus 364 ~~~~~~~~e~~~il~~~~~~~~--~~i~~~~l~~i~~~~~~------g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~ 435 (458)
.+++++.+++.+++..++...+ ..++++++..+++.+ . |++|.+..+++.+...|...+...++.+++..+
T Consensus 211 ~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~ 289 (412)
T 1w5s_A 211 HLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY-GEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKA 289 (412)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH-CGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 9999999999999988766432 358999999999999 7 999999999999888887777778999999877
Q ss_pred HHh
Q 012719 436 KAL 438 (458)
Q Consensus 436 ~~~ 438 (458)
+.-
T Consensus 290 ~~~ 292 (412)
T 1w5s_A 290 VSE 292 (412)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.57 E-value=2.6e-14 Score=156.47 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=76.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCC-----CCChhHhhhhcccccCCCCHHHHH
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPH-----GIPLDLLDRLVIIRTQIYGPAEMI 374 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~-----~l~~~l~sR~~~i~~~~~~~~e~~ 374 (458)
+||||| .+.++++.|+..|+... -.+|.+|| ... .+++++++||..+.|++|+.+++.
T Consensus 269 ~iLfiD----~~~~~~~~L~~~l~~~~-v~~I~at~------------~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~ 331 (758)
T 3pxi_A 269 IILFID----AAIDASNILKPSLARGE-LQCIGATT------------LDEYRKYIEKDAALERRFQPIQVDQPSVDESI 331 (758)
T ss_dssp CEEEEC----C--------CCCTTSSS-CEEEEECC------------TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHH
T ss_pred EEEEEc----CchhHHHHHHHHHhcCC-EEEEeCCC------------hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHH
Confidence 799999 55678888988888543 24555663 233 588999999998999999999999
Q ss_pred HHHHHHHHh----cCCccCHHHHHHHHHHhhc-----CCHHHHHHhhHHHHHHHhhh
Q 012719 375 QILAIRAQV----EEIVLDEESLAHLGEIARD-----TSLRHAVQLLYPASVVAKMN 422 (458)
Q Consensus 375 ~il~~~~~~----~~~~i~~~~l~~i~~~~~~-----g~~r~a~~ll~~a~~~a~~~ 422 (458)
+|++..+.. .++.++++++..++.++.+ ..++.++.+++.|...+...
T Consensus 332 ~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 332 QILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 999977654 6788999999999998722 23678999998887766544
No 81
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.54 E-value=2.6e-13 Score=137.07 Aligned_cols=143 Identities=17% Similarity=0.082 Sum_probs=105.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhcc---------CCC-eEEEecCCccccccCC--CCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESS---------LSP-IVIFATNRGICNIRGT--DMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~---------~~~-i~il~tn~~~~~~~~~--~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
||+|+||++.++++.+.+|+.+||+. +.+ .+|.++|++. -++. .. .-..|+++++|||..+ ..
T Consensus 302 Gvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~--~yd~~~s~-~~~~Lp~alLDRFDLi~i~~ 378 (506)
T 3f8t_A 302 GILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE--QWPSDPPI-ARIDLDQDFLSHFDLIAFLG 378 (506)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC----CCSCGG-GGCCSCHHHHTTCSEEEETT
T ss_pred CeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc--ccCCCCCc-cccCCChHHhhheeeEEEec
Confidence 99999999999999999999999964 445 6777777765 1111 01 2248899999999544 23
Q ss_pred CC-------------CCHHHHHHHHHHHH-HhcCCccCHHHHHHHHHHhh-----------------cCCHHHHHHhhHH
Q 012719 366 QI-------------YGPAEMIQILAIRA-QVEEIVLDEESLAHLGEIAR-----------------DTSLRHAVQLLYP 414 (458)
Q Consensus 366 ~~-------------~~~~e~~~il~~~~-~~~~~~i~~~~l~~i~~~~~-----------------~g~~r~a~~ll~~ 414 (458)
+. ++.+++.+++...- ......+++++.++|+++.. .-++|.++.+++.
T Consensus 379 d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl 458 (506)
T 3f8t_A 379 VDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL 458 (506)
T ss_dssp C--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH
T ss_pred CCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH
Confidence 32 33455555555443 23478899999998875410 1258999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHhhhchHHH
Q 012719 415 ASVVAKMNGRDSICKADVEEVKALYLDAKSS 445 (458)
Q Consensus 415 a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~ 445 (458)
|.++|.+.++..|+++||..|+.++-.....
T Consensus 459 A~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~ 489 (506)
T 3f8t_A 459 AKAHARMRLSDDVEPEDVDIAAELVDWYLET 489 (506)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987665543
No 82
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.48 E-value=1.2e-13 Score=123.91 Aligned_cols=70 Identities=24% Similarity=0.169 Sum_probs=49.5
Q ss_pred eEEEEcccchhc--------HHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhcccccCCCCHH
Q 012719 300 GVLFIDEVHMLD--------MECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPA 371 (458)
Q Consensus 300 ~Vl~IDE~~~l~--------~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i~~~~~~~~ 371 (458)
.|++|||++.+. ...++.|+..++.... .+|+++|.... .....+++++++||..+.+++++.+
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~~~~~~~-------~~~~~~~~~l~~r~~~i~~~~p~~~ 188 (195)
T 1jbk_A 117 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL-HCVGATTLDEY-------RQYIEKDAALERRFQKVFVAEPSVE 188 (195)
T ss_dssp EEEEEETGGGGTT------CCCCHHHHHHHHHTTSC-CEEEEECHHHH-------HHHTTTCHHHHTTEEEEECCCCCHH
T ss_pred eEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCe-EEEEeCCHHHH-------HHHHhcCHHHHHHhceeecCCCCHH
Confidence 689999999985 3347778877776543 45556632110 0012678999999998899999999
Q ss_pred HHHHHH
Q 012719 372 EMIQIL 377 (458)
Q Consensus 372 e~~~il 377 (458)
++.+++
T Consensus 189 ~~~~il 194 (195)
T 1jbk_A 189 DTIAIL 194 (195)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 988765
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.42 E-value=6.3e-13 Score=115.11 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=46.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCC-eEEEecCCccccccCCCCCCCCCCChhHhhhhcc--cccCCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVI--IRTQIY 368 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~--i~~~~~ 368 (458)
++|||||++.++++.++.|+.+|+..+.. .+|++||..... ......+.+.|..|+.. +.++|+
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~-----~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVE-----LAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHH-----HHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHH-----HHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 89999999999999999999999876655 577788643110 01134677888899854 367765
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.40 E-value=2.4e-13 Score=117.53 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 41 GFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 41 ~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
+++|+....+.+...+..+.. .+.++||+||||||||++|++++.... ||+.++.+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~ 61 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVE 61 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTT
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhh
Confidence 578998887766655544432 336899999999999999999998765 566665543
No 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.38 E-value=1.1e-12 Score=117.27 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=39.5
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 37 PLAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 37 ~~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..|++++|+++....+. +.+..+ .+++++|+||||||||++|+++++.+.
T Consensus 19 ~~~~~~~g~~~~~~~l~---~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAI---QILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp TCSCCCCSCHHHHHHHH---HHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cccchhhcchHHHHHHH---HHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999998776544 444443 246899999999999999999999884
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.14 E-value=1.1e-09 Score=109.56 Aligned_cols=115 Identities=26% Similarity=0.257 Sum_probs=85.7
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|.||+||++.|+++.|..|++++|+.. .+ -+|.+||+... ..-....+.++|..|+..+ .+
T Consensus 224 gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~-----~~v~~g~fr~dL~~rl~~~~i~l 298 (368)
T 3dzd_A 224 GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE-----EEIKKGNFREDLYYRLSVFQIYL 298 (368)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH-----HHHHTTSSCHHHHHHHTSEEEEC
T ss_pred CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH-----HHHHcCCccHHHHHHhCCeEEeC
Confidence 899999999999999999999999742 12 36777764311 0112456778899999765 79
Q ss_pred CCCCH--HHHHHHHHHH----HHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHH
Q 012719 366 QIYGP--AEMIQILAIR----AQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 366 ~~~~~--~e~~~il~~~----~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a 419 (458)
+|+.+ +++..++..- +...+ ..+++++++.|..+.=.||.|.+.+.++++...+
T Consensus 299 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 299 PPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred CChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 99976 6766554433 33333 4599999999998876799999999999887654
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.14 E-value=1.9e-09 Score=108.45 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=92.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccC-----------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhhccc--cc
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSL-----------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII--RT 365 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~-----------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i--~~ 365 (458)
|+||+||++.|+.+.|..|++++++.. .+ -+|.+||+... ++-....+.+.|..|+..+ .+
T Consensus 233 gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~-----~~~~~g~fr~dl~~rl~~~~i~l 307 (387)
T 1ny5_A 233 GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIK-----ELVKEGKFREDLYYRLGVIEIEI 307 (387)
T ss_dssp SEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHH-----HHHHTTSSCHHHHHHHTTEEEEC
T ss_pred cEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHH-----HHHHcCCccHHHHHhhcCCeecC
Confidence 999999999999999999999999731 12 47778864311 0112456778888898644 78
Q ss_pred CCCCH--HHHHHHHHH----HHHhcC---CccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHH
Q 012719 366 QIYGP--AEMIQILAI----RAQVEE---IVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEE 434 (458)
Q Consensus 366 ~~~~~--~e~~~il~~----~~~~~~---~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~ 434 (458)
+|+.+ +++..++.. .++..+ ..+++++++.+..+.=.|+.|.+.+.++++...+ ....|+.+++-.
T Consensus 308 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 382 (387)
T 1ny5_A 308 PPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSC 382 (387)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHH
T ss_pred CcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcH
Confidence 88864 666555543 333333 3589999999998876799999999999888766 345688888753
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.01 E-value=2.4e-08 Score=98.14 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=73.1
Q ss_pred eEEEEcccchhcH-------HHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhc-ccccCCCCHH
Q 012719 300 GVLFIDEVHMLDM-------ECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV-IIRTQIYGPA 371 (458)
Q Consensus 300 ~Vl~IDE~~~l~~-------~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~~~ 371 (458)
.|++|||+|.+.. +....|...++..+.-.+|+++..... .. +.........++..|.. .+.+.+++.+
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~-l~--~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGL-LH--DFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHH-HH--HHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHH-HH--HHHhhcCCCCccccCccceeeCCCCCHH
Confidence 7999999999864 566767666666432234444321100 00 00000111223555654 6799999999
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhH
Q 012719 372 EMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLY 413 (458)
Q Consensus 372 e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~ 413 (458)
|..+++...+...+..++++.+..++..+ .|.|..+..+..
T Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~i~~~t-gG~P~~l~~~~~ 247 (350)
T 2qen_A 207 TSVEFLKRGFREVNLDVPENEIEEAVELL-DGIPGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 99999998888778889999999999999 999987655554
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.89 E-value=4.8e-08 Score=96.09 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=68.9
Q ss_pred ceEEEEcccchhcH----HHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhh-cccccCCCCHHHH
Q 012719 299 PGVLFIDEVHMLDM----ECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRL-VIIRTQIYGPAEM 373 (458)
Q Consensus 299 ~~Vl~IDE~~~l~~----~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~ 373 (458)
+.|++|||+|.+.. +....|....+..+.-.+|+++..... .. +.-.......++..|+ ..+.+.+++.+|.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~-l~--~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGL-LY--DYLRVEDPESPLFGRAFSTVELKPFSREEA 214 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHH-HH--HHTTTTCTTSTTTTCCCEEEEECCCCHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHH-HH--HHHhccCCCCccccCccceeecCCCCHHHH
Confidence 37999999999864 455566555555432234444422110 00 0000011223455675 5679999999999
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHH
Q 012719 374 IQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYP 414 (458)
Q Consensus 374 ~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~ 414 (458)
.+++...+...+...++. ..++..+ .|+|..+..+...
T Consensus 215 ~~~l~~~~~~~~~~~~~~--~~i~~~t-~G~P~~l~~~~~~ 252 (357)
T 2fna_A 215 IEFLRRGFQEADIDFKDY--EVVYEKI-GGIPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHTCCCCCH--HHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcH--HHHHHHh-CCCHHHHHHHHHH
Confidence 999998877666666554 8888888 8999887666554
No 90
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.82 E-value=1.1e-08 Score=96.73 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=39.3
Q ss_pred eEEEecCCccccccCCCCCCC-CCCChhHhhhhcccccC--------CCCHHHHHHHHHHHHHhcCCccCH
Q 012719 329 IVIFATNRGICNIRGTDMNSP-HGIPLDLLDRLVIIRTQ--------IYGPAEMIQILAIRAQVEEIVLDE 390 (458)
Q Consensus 329 i~il~tn~~~~~~~~~~~~~~-~~l~~~l~sR~~~i~~~--------~~~~~e~~~il~~~~~~~~~~i~~ 390 (458)
-+|++||...+.+.. .+.+ ....++|+|||..+.|. ++++++....++.. +.+..++++
T Consensus 192 PvIitsN~~i~~~~~--g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 192 PVIVTSNTNMCAVID--GNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp CEEEEESSCTTCEEE--TTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred CEEEEecCCcccccc--cCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 466688754332111 1111 25567899999999888 89999999999854 666666544
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.74 E-value=2.1e-08 Score=91.08 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=60.6
Q ss_pred CCccccccchH-HHHHHHHHHHHHHHhccc--CCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCCcccchhhhh
Q 012719 36 VPLAAGFVGQV-EAREAAGLVVDMIRQKKM--AGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGSEVYSSEVKK 111 (458)
Q Consensus 36 ~~~l~~liG~~-~~~~~l~~l~~~~~~~~~--~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~~~~~~~~~~ 111 (458)
..+|+++++.. ....++..+..++..... .+.+++|+||||||||++|++++..+.. ..+++.++.+++.......
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHS 100 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHH
Confidence 35789998755 334444455555554322 1268999999999999999999998832 2456666555443322111
Q ss_pred hH--HHHHHHHHHHhccccCCceEEEccccccC
Q 012719 112 TE--ILMENFRRAIGLRIKENKEVYEGEVTELS 142 (458)
Q Consensus 112 ~~--~l~~~f~~a~~~~~~~~~ii~iDE~d~l~ 142 (458)
.. .+...+.... .+.++++||++...
T Consensus 101 ~~~~~~~~~~~~~~-----~~~~lilDei~~~~ 128 (202)
T 2w58_A 101 LQDQTMNEKLDYIK-----KVPVLMLDDLGAEA 128 (202)
T ss_dssp ---CCCHHHHHHHH-----HSSEEEEEEECCC-
T ss_pred hccchHHHHHHHhc-----CCCEEEEcCCCCCc
Confidence 00 1122222222 25799999996643
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=2.3e-08 Score=86.65 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..++|+||+|+|||+++++++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 557899999999999999999999873
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=2.8e-08 Score=88.56 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCccccccc-hHHHHHHHHHHHHHHHhc-ccCCceEEEEcCCCChHHHHHHHHHHHhC--CCccEEEecCCcccchhhhh
Q 012719 36 VPLAAGFVG-QVEAREAAGLVVDMIRQK-KMAGRALLLAGPPGTGKTALALGICQELG--SKVPFCPMVGSEVYSSEVKK 111 (458)
Q Consensus 36 ~~~l~~liG-~~~~~~~l~~l~~~~~~~-~~~~~~~Ll~GppGtGKT~lA~alA~~l~--~~~p~i~l~~~~~~~~~~~~ 111 (458)
..+|+++++ ....+.++..+..++.+- ..++.+++|+||||||||+++++++..+. ....++.++..++.......
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL 85 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 357888886 334444444444555442 23357899999999999999999999882 11233334433332221111
Q ss_pred hHH--HHHHHHHHHhccccCCceEEEcccccc
Q 012719 112 TEI--LMENFRRAIGLRIKENKEVYEGEVTEL 141 (458)
Q Consensus 112 ~~~--l~~~f~~a~~~~~~~~~ii~iDE~d~l 141 (458)
... ....++. ...|.++++||++..
T Consensus 86 ~~~~~~~~~~~~-----~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 86 MDEGKDTKFLKT-----VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHTCCSHHHHH-----HHTCSEEEEETCSSS
T ss_pred hcCchHHHHHHH-----hcCCCEEEEeCCCCC
Confidence 000 0011111 124899999999754
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.62 E-value=1.3e-07 Score=85.57 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=28.3
Q ss_pred HHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 54 LVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 54 ~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.+..+++ +.+..+++||+||||||||++|.++|+.+.
T Consensus 47 ~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 47 ALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3334444 344346799999999999999999999885
No 95
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.57 E-value=2.1e-07 Score=107.66 Aligned_cols=127 Identities=16% Similarity=0.071 Sum_probs=78.5
Q ss_pred CCCccccccchHHHHHHHHHHHHHHH-h----------------------------------c-ccCCceEEEEcCCCCh
Q 012719 35 AVPLAAGFVGQVEAREAAGLVVDMIR-Q----------------------------------K-KMAGRALLLAGPPGTG 78 (458)
Q Consensus 35 ~~~~l~~liG~~~~~~~l~~l~~~~~-~----------------------------------~-~~~~~~~Ll~GppGtG 78 (458)
+...|+++.|.+++|..+...+.+.- . | .+.++.+|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 45789999999988887655543221 1 1 2234559999999999
Q ss_pred HHHHHHHHHHHhCC-CccEEEecCCccc------------chhhhh----hH-HHHHHHHHHHhccccCCceEEEccccc
Q 012719 79 KTALALGICQELGS-KVPFCPMVGSEVY------------SSEVKK----TE-ILMENFRRAIGLRIKENKEVYEGEVTE 140 (458)
Q Consensus 79 KT~lA~alA~~l~~-~~p~i~l~~~~~~------------~~~~~~----~~-~l~~~f~~a~~~~~~~~~ii~iDE~d~ 140 (458)
||++|++++.+... .-|.+.++..+.. ..|+++ .+ .++.+|..|+. ..||++|+|++++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~---~~~~~i~~d~~~a 1171 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAA 1171 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH---TCCSEEEESCGGG
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh---cCCeEEEeCchHh
Confidence 99999999976621 1344444444433 455566 55 68888888875 4599999999999
Q ss_pred cCccccC---Cc---cCCchhhHHHHHHhh
Q 012719 141 LSPEETE---SI---TGGYGKSISHVIIGL 164 (458)
Q Consensus 141 l~~~~~~---~~---~~~~~~~~~~~l~~l 164 (458)
|+|.+.. .. .+-..|.+++.|..|
T Consensus 1172 l~~~~~~~g~~~~~~~~~~~r~~~q~l~~~ 1201 (1706)
T 3cmw_A 1172 LTPKAEIEGEIGDSHMGLAARMMSQAMRKL 1201 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHH
T ss_pred cCcccccccccccccccHHHHHHHHHHHHH
Confidence 9999532 11 122345677777663
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.55 E-value=1.8e-07 Score=112.65 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=55.0
Q ss_pred eEEEEcccchhcH------HHHHHHHHHhhccC------------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDM------ECFSYLNRALESSL------------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~------~~~~~Ll~~lE~~~------------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
.|+||||++.... .....|++.||... .+ .+|.++|+++. .--..|++.|++||
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~-------gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTD-------PGRIPMSERFTRHA 1410 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTS-------TTCCCCCHHHHTTE
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCcc-------CCCccCChhhhhee
Confidence 7999999887543 36778888887421 12 45666654310 11146899999999
Q ss_pred cccccCCCCHHHHHHHHHHHHH
Q 012719 361 VIIRTQIYGPAEMIQILAIRAQ 382 (458)
Q Consensus 361 ~~i~~~~~~~~e~~~il~~~~~ 382 (458)
.++.++.++.+++.+|+..+..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.41 E-value=2e-07 Score=90.66 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=56.6
Q ss_pred CccccccchH-HHHHHHHHHHHHHHhcc-cCCceEEEEcCCCChHHHHHHHHHHHhC--CCccEEEecCCcccchhhhhh
Q 012719 37 PLAAGFVGQV-EAREAAGLVVDMIRQKK-MAGRALLLAGPPGTGKTALALGICQELG--SKVPFCPMVGSEVYSSEVKKT 112 (458)
Q Consensus 37 ~~l~~liG~~-~~~~~l~~l~~~~~~~~-~~~~~~Ll~GppGtGKT~lA~alA~~l~--~~~p~i~l~~~~~~~~~~~~~ 112 (458)
.+|+++++.. .....+..+..++.... .++.+++|+||||||||++|.++|..+. ...+++.++.+++........
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~ 200 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAI 200 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCC
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHh
Confidence 5799998633 32333344445555421 1247999999999999999999998774 224455555544432211100
Q ss_pred --HHHHHHHHHHHhccccCCceEEEcccccc
Q 012719 113 --EILMENFRRAIGLRIKENKEVYEGEVTEL 141 (458)
Q Consensus 113 --~~l~~~f~~a~~~~~~~~~ii~iDE~d~l 141 (458)
..+...+... ..+.++++||+...
T Consensus 201 ~~~~~~~~~~~~-----~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 201 SNGSVKEEIDAV-----KNVPVLILDDIGAE 226 (308)
T ss_dssp C----CCTTHHH-----HTSSEEEEETCCC-
T ss_pred ccchHHHHHHHh-----cCCCEEEEcCCCCC
Confidence 0011111111 23679999999654
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.40 E-value=7.1e-06 Score=99.12 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=68.0
Q ss_pred eEEEEcccchhcHHHHHHH-------HHHhhcc--------------CCCeEEEecCCccccccCCCCCCCCCCChhHhh
Q 012719 300 GVLFIDEVHMLDMECFSYL-------NRALESS--------------LSPIVIFATNRGICNIRGTDMNSPHGIPLDLLD 358 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~L-------l~~lE~~--------------~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~s 358 (458)
..+.+||+++++++++..| ..++.+. +...++++.|++ +.....||+.+++
T Consensus 699 aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg--------y~g~~eLP~~Lk~ 770 (2695)
T 4akg_A 699 AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG--------YNGRSELPENLKK 770 (2695)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC--------SSSSCCCCHHHHT
T ss_pred CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC--------ccCcccccHHHHh
Confidence 4566677777776666655 2222211 222455566653 1345689999999
Q ss_pred hhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH---hhc---------CCHHHHHHhhHHHHHHHh
Q 012719 359 RLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEI---ARD---------TSLRHAVQLLYPASVVAK 420 (458)
Q Consensus 359 R~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~---~~~---------g~~r~a~~ll~~a~~~a~ 420 (458)
||..+.+..++.+.+.+|+.... |....+.....++.. +++ .++|....+|..|..+-.
T Consensus 771 ~Fr~v~m~~Pd~~~i~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr 841 (2695)
T 4akg_A 771 SFREFSMKSPQSGTIAEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLIS 841 (2695)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred heEEEEeeCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhc
Confidence 99999999999999998876542 343344444444432 111 368888888887765543
No 99
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=98.21 E-value=4.4e-07 Score=70.37 Aligned_cols=90 Identities=32% Similarity=0.406 Sum_probs=76.0
Q ss_pred hccccCCceEEEccccccCccccCCccCCchhhHHHHHHhhccccccccccCChhHHHHHhhhccccCCeEEEeccCccc
Q 012719 124 GLRIKENKEVYEGEVTELSPEETESITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAV 203 (458)
Q Consensus 124 ~~~~~~~~ii~iDE~d~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~ 203 (458)
+++.++-..+|..|+..|.+.+..++.. .. ...+.|+|.|+...+++++.+++++.++++..||+++|++.++++
T Consensus 4 GvRIkE~keVyEGEV~ei~~~~~~~~~~---~~--~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V 78 (95)
T 2cqa_A 4 GSSGKEETEIIEGEVVEIQIDRPATGTG---SK--VGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKI 78 (95)
T ss_dssp CCSCCCCCSEEEEEEEEEEEECTTSSSS---SC--EEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEE
T ss_pred EEEEEEEEEEEEEEEEEEEEeecCCCCc---ce--EEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEE
Confidence 4556778889999999999888776422 11 112567999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccc
Q 012719 204 KRVGRSDAFATEFDL 218 (458)
Q Consensus 204 ~~~gr~~~~~~~~d~ 218 (458)
.++||++.+.+.||.
T Consensus 79 ~klGRs~~~a~~yDl 93 (95)
T 2cqa_A 79 SKLGRSFTRARSGPS 93 (95)
T ss_dssp EEEECCCCCCCCCSC
T ss_pred EEEEEeecccccccc
Confidence 999999888787764
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.18 E-value=3.4e-06 Score=81.61 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=50.3
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHH-HHHHHHHHHhccccCCceEEEcccc
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEI-LMENFRRAIGLRIKENKEVYEGEVT 139 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~-l~~~f~~a~~~~~~~~~ii~iDE~d 139 (458)
.|..+++.++++||||||||++|..+|...+.++.|+.+...+....+....+. +...++.... .. ++++|++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~----~~-LLVIDsI~ 192 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ----HR-VIVIDSLK 192 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH----CS-EEEEECCT
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh----CC-EEEEeccc
Confidence 344555678999999999999999999876666778887322222222222232 3333333322 23 99999999
Q ss_pred ccCcccc
Q 012719 140 ELSPEET 146 (458)
Q Consensus 140 ~l~~~~~ 146 (458)
++.+...
T Consensus 193 aL~~~~~ 199 (331)
T 2vhj_A 193 NVIGAAG 199 (331)
T ss_dssp TTC----
T ss_pred ccccccc
Confidence 9976544
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.92 E-value=4.4e-05 Score=92.99 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=54.0
Q ss_pred eEEEEcccchhcHH------HHHHHHHHhhcc----C--------CC-eEEEecCCccccccCCCCCCCCCCChhHhhhh
Q 012719 300 GVLFIDEVHMLDME------CFSYLNRALESS----L--------SP-IVIFATNRGICNIRGTDMNSPHGIPLDLLDRL 360 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~------~~~~Ll~~lE~~----~--------~~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~ 360 (458)
.|+||||++.-.++ ....|+.+||.. + .+ .+|.+.|+.+. .....+++.|++||
T Consensus 1376 ~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~-------gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTD-------AGRVQLTHRFLRHA 1448 (3245)
T ss_dssp EEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTS-------TTCCCCCHHHHTTC
T ss_pred EEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCC-------CCCccCCHHHHhhc
Confidence 79999999987643 788888888742 1 12 34445543210 12246899999999
Q ss_pred cccccCCCCHHHHHHHHHHHH
Q 012719 361 VIIRTQIYGPAEMIQILAIRA 381 (458)
Q Consensus 361 ~~i~~~~~~~~e~~~il~~~~ 381 (458)
.++.++.++++++..|.....
T Consensus 1449 ~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999976544
No 102
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.88 E-value=9e-06 Score=74.14 Aligned_cols=53 Identities=26% Similarity=0.468 Sum_probs=40.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHHHh
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRAIG 124 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a~~ 124 (458)
.++|.||||+||+|+|+.||+.++ +.+++..++....+.....+...++..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g----~~~istGdllR~~i~~~t~lg~~~~~~~~ 54 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG----FVHISTGDILREAVQKGTPLGKKAKEYME 54 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----CEEEEHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CeEEcHHHHHHHHHHhcChhhhhHHHHHh
Confidence 478999999999999999999998 77888888877666554444444444443
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=0.00013 Score=64.65 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=46.3
Q ss_pred eEEEEccc---chhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhh--hcccccCCCCHHHHH
Q 012719 300 GVLFIDEV---HMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDR--LVIIRTQIYGPAEMI 374 (458)
Q Consensus 300 ~Vl~IDE~---~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR--~~~i~~~~~~~~e~~ 374 (458)
.++++||+ ..+++..++.+.+.+++. ...+|+++.. +....+...+.+| +.++.+.+.+.+++.
T Consensus 101 ~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H~----------~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~ 169 (178)
T 1ye8_A 101 KVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPI----------RDVHPLVKEIRRLPGAVLIELTPENRDVIL 169 (178)
T ss_dssp CEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCS----------SCCSHHHHHHHTCTTCEEEECCTTTTTTHH
T ss_pred CEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEcc----------CCCchHHHHHHhcCCcEEEEecCcCHHHHH
Confidence 89999994 557789999999999984 3334445521 1123445567787 677788888877666
Q ss_pred HHHH
Q 012719 375 QILA 378 (458)
Q Consensus 375 ~il~ 378 (458)
+.+.
T Consensus 170 ~~l~ 173 (178)
T 1ye8_A 170 EDIL 173 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.76 E-value=6.4e-05 Score=67.15 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=39.0
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCCccccccCCCCCCCCCCChhHhhhhccc-ccCCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVII-RTQIY 368 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~~i-~~~~~ 368 (458)
.+++|||+|.++++.++.|....++ ..++++.+.... -...+...++.++++...+ .+...
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~-------f~~~~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLT-------HKQNPFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEEESBC-------TTSCBCHHHHHHHHHCSEEEECCBC
T ss_pred CEEEEECcccCCHHHHHHHHHHHHC-CCCEEEEeeccc-------cccCCccchHHHHHHhhheEEeeee
Confidence 7999999999988888888888776 334444333110 0024455566788888544 44433
No 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.72 E-value=0.0003 Score=72.04 Aligned_cols=58 Identities=33% Similarity=0.448 Sum_probs=35.7
Q ss_pred CCCccCCCCCCcccccc-chHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 27 LGLEANGNAVPLAAGFV-GQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 27 ~~~~~~~~~~~~l~~li-G~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++-+...| .+|+++- +|.++.. .+...+..+. .++++.||||||||+++.+++..+.
T Consensus 12 ~~~~~~~~p-~~~~~Ln~~Q~~av~---~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 12 SGLVPRGSH-MTFDDLTEGQKNAFN---IVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp ----------CCSSCCCHHHHHHHH---HHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCccccCC-CccccCCHHHHHHHH---HHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345555555 3477775 5555554 4445555542 3899999999999999999998873
No 106
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.70 E-value=2.9e-05 Score=71.30 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=40.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhhhhhHHHHHHHHHH
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEVKKTEILMENFRRA 122 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~~~~~~l~~~f~~a 122 (458)
..++-++|.||||+||+|+|+.||+.++ +.+++..++....+.....+...++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g----~~hIstGdllR~~i~~~t~lg~~~~~~ 81 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH----FNHLSSGDLLRAEVQSGSPKGKELKAM 81 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC----CEEECHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC----CceEcHHHHHHHHHHcCCchHHHHHHH
Confidence 3346788899999999999999999998 778888777766655433333333333
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.63 E-value=0.00079 Score=82.34 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=68.8
Q ss_pred eEEEEcccchhcHHHHHHHHHHhh-----------------c-----cCCCeEEEecCCccccccCCCCCCCCCCChhHh
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALE-----------------S-----SLSPIVIFATNRGICNIRGTDMNSPHGIPLDLL 357 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE-----------------~-----~~~~i~il~tn~~~~~~~~~~~~~~~~l~~~l~ 357 (458)
.-..+||++++++++...+...+. . .+..-++++.|++- .....||+.|+
T Consensus 658 aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY--------~gr~eLP~nLk 729 (3245)
T 3vkg_A 658 AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGY--------AGRSNLPDNLK 729 (3245)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCG--------GGCCCSCHHHH
T ss_pred cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCc--------cCcccChHHHH
Confidence 445667777777776666555433 0 11223455555431 23468999999
Q ss_pred hhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHH---Hhh---------cCCHHHHHHhhHHHHHHH
Q 012719 358 DRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGE---IAR---------DTSLRHAVQLLYPASVVA 419 (458)
Q Consensus 358 sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~---~~~---------~g~~r~a~~ll~~a~~~a 419 (458)
+||..+.+..++.+.+.+|+... .|..-.......++. ++. +.++|..-..|..|..+-
T Consensus 730 ~lFr~v~m~~Pd~~~i~ei~L~s---~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lk 800 (3245)
T 3vkg_A 730 KLFRSMAMIKPDREMIAQVMLYS---QGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIK 800 (3245)
T ss_dssp TTEEEEECCSCCHHHHHHHHHHT---TTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEeCCCHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999987653 344333444444442 221 136898888888777653
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.58 E-value=8.1e-05 Score=87.45 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=53.2
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecCC--cccchhhh------------hhH-HHHHHHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVGS--EVYSSEVK------------KTE-ILMENFRRA 122 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~~--~~~~~~~~------------~~~-~l~~~f~~a 122 (458)
.|..++++++|+||||||||+||.+++... +..+.|+....+ .+.....| ..+ .++.+++.+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 456677899999999999999999998776 333345544432 11111111 222 344444443
Q ss_pred HhccccCCceEEEccccccCccc
Q 012719 123 IGLRIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 123 ~~~~~~~~~ii~iDE~d~l~~~~ 145 (458)
.. ..|++|++|+++++.+..
T Consensus 1502 r~---~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1502 RS---GAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HH---TCCSEEEESCGGGCCCHH
T ss_pred hc---CCCCEEEEcChhHhcccc
Confidence 33 459999999999999853
No 109
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.58 E-value=0.0001 Score=68.89 Aligned_cols=39 Identities=18% Similarity=0.489 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccch
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSS 107 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~ 107 (458)
++..++|.||||+||||+|+.|++.++ +..++..++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g----~~~is~~~~~r~ 66 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC----YCHLSTGDLLRE 66 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC----CEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC----CeEEecHHHHHH
Confidence 456899999999999999999999987 344444444443
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=6.9e-05 Score=65.94 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
..+++.|+||+||||+|+.|++.++ .+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~--~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP--EPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS--SCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCeEEecc
Confidence 5789999999999999999999998 45665543
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.51 E-value=6.2e-05 Score=66.74 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
++.++|.|||||||||+|+.||+.++ .+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~--~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK--RILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC--CCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEEC
Confidence 35899999999999999999999998 557654
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.47 E-value=0.00022 Score=75.05 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+++.||||||||+++.+++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.00011 Score=66.29 Aligned_cols=34 Identities=35% Similarity=0.535 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
++..++|.|||||||||+++.||+.++ .+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~--~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN--VPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEEcch
Confidence 446899999999999999999999998 5566543
No 114
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.39 E-value=0.0056 Score=63.69 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=64.5
Q ss_pred ccceEEEEcccchh----cHHHHHHHHHHhhccCCC--eEEEecCCccccccCCCCCCCCCCChhHhhhhc-ccccCCCC
Q 012719 297 LVPGVLFIDEVHML----DMECFSYLNRALESSLSP--IVIFATNRGICNIRGTDMNSPHGIPLDLLDRLV-IIRTQIYG 369 (458)
Q Consensus 297 ~~~~Vl~IDE~~~l----~~~~~~~Ll~~lE~~~~~--i~il~tn~~~~~~~~~~~~~~~~l~~~l~sR~~-~i~~~~~~ 369 (458)
..+-|++|||++.+ ..+....|.++....+.- .+|++|++ .....++..+++-|. .+.|.--+
T Consensus 342 lP~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQR----------Ps~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 342 LPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQR----------PSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp CCEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESC----------CCTTTSCHHHHHTCCEEEEECCSC
T ss_pred CCcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecC----------cccccccHHHHhhhccEEEEEcCC
Confidence 34579999999977 356777888888887765 67778843 122378888999995 44788788
Q ss_pred HHHHHHHHHHHHH----h-----------------cCCccCHHHHHHHHHHh
Q 012719 370 PAEMIQILAIRAQ----V-----------------EEIVLDEESLAHLGEIA 400 (458)
Q Consensus 370 ~~e~~~il~~~~~----~-----------------~~~~i~~~~l~~i~~~~ 400 (458)
..+...+|-.... . .+.-++++.+..+++..
T Consensus 412 ~~Dsr~ILd~~gAe~LlG~Gdml~l~~G~~~~~Rvq~~fvsd~ei~~vv~~~ 463 (574)
T 2iut_A 412 KIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAW 463 (574)
T ss_dssp HHHHHHHHSSSCGGGCCSTTEEEEECTTCSSCEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHhhcCCCCcEEEecCCCCccEEEECCcCCHHHHHHHHHHH
Confidence 8888887742110 0 01236788888888764
No 115
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.36 E-value=0.00012 Score=66.33 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
...|++|+||||||+.|..++...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 368899999999999998876553
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.32 E-value=0.0066 Score=63.80 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=35.8
Q ss_pred ccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHH
Q 012719 38 LAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 38 ~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
....++|.+.....+...+ .......+-++++||+|+|||++|..++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKL---SKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHH---TTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCeecccHHHHHHHHHHH---hcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4567999998888665443 32222345788999999999999999864
No 117
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.31 E-value=0.00015 Score=63.24 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.+++|.|+|||||||+|+.||+.++ .|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg--~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK--LEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT--CCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEC
Confidence 4899999999999999999999998 567764
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.29 E-value=0.00014 Score=64.13 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
++.++|+|+||+||||+++.|++.++ .+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG--LKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEH
Confidence 35799999999999999999999998 455553
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.29 E-value=0.00019 Score=63.83 Aligned_cols=31 Identities=29% Similarity=0.575 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
+..++|.|+||+||||+++.|++.++ .+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR--LPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT--CCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC--CeEec
Confidence 45788999999999999999999997 45555
No 120
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.29 E-value=0.00014 Score=63.87 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.++|.|||||||||+|+.||+.++ .+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~--~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD--LVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT--CEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC--CCEEcc
Confidence 689999999999999999999998 556653
No 121
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.28 E-value=0.00063 Score=67.62 Aligned_cols=72 Identities=18% Similarity=0.086 Sum_probs=46.9
Q ss_pred HHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc-chhhhhhHHHHHHHHHHHhccccCCceE
Q 012719 55 VVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY-SSEVKKTEILMENFRRAIGLRIKENKEV 133 (458)
Q Consensus 55 l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~-~~~~~~~~~l~~~f~~a~~~~~~~~~ii 133 (458)
+++.+..+..++..++++||||+||||++++++..++. .++.+..++-. ..+++ . ..+..++
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g--~~~~~~~~~~~~~~~lg------~---------~~q~~~~ 220 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG--KALNVNLPLDRLNFELG------V---------AIDQFLV 220 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC--EEECCSSCTTTHHHHHG------G---------GTTCSCE
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCC--cEEEEeccchhHHHHHH------H---------hcchhHH
Confidence 33444556667788999999999999999999998863 23332222110 00111 1 1336778
Q ss_pred EEccccccCc
Q 012719 134 YEGEVTELSP 143 (458)
Q Consensus 134 ~iDE~d~l~~ 143 (458)
++|+++.+..
T Consensus 221 l~dd~~~~~~ 230 (377)
T 1svm_A 221 VFEDVKGTGG 230 (377)
T ss_dssp EETTCCCSTT
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 122
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.28 E-value=0.00019 Score=62.47 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
.++|.|||||||||+|+.|++.++ .+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK--YPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC--CCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeeecCc
Confidence 588999999999999999999998 4565543
No 123
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.27 E-value=0.00017 Score=63.90 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
..++|.|+|||||||+|+.|++.++ ++++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG--VGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT--CCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC--CCEEeCc
Confidence 3589999999999999999999998 5666543
No 124
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.25 E-value=0.00018 Score=65.82 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
+..++|.|+|||||||+|+.||+.++ .+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG--LAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--ceEEeh
Confidence 45799999999999999999999998 455543
No 125
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=0.00036 Score=65.45 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhc---ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 47 EAREAAGLVVDMIRQK---KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 47 ~~~~~l~~l~~~~~~~---~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
+....+..+...+..+ ...+..++|.||||+||||+|+.|+..++. +.+.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~--~~~~~~~D~ 67 (253)
T 2p5t_B 10 EFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQG--NIVIIDGDS 67 (253)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTT--CCEEECGGG
T ss_pred HHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCC--CcEEEecHH
Confidence 3444444444433332 222457899999999999999999999873 344455443
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.23 E-value=0.00021 Score=62.41 Aligned_cols=30 Identities=33% Similarity=0.703 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..+.|.|||||||||+++.||..++ .+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~--~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN--MEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT--CEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEEe
Confidence 4789999999999999999999998 34443
No 127
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.23 E-value=0.00019 Score=65.29 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.++|.|||||||||+|+.|++.++ .+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG--IPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeH
Confidence 478999999999999999999987 444443
No 128
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00018 Score=63.95 Aligned_cols=32 Identities=41% Similarity=0.622 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH-hCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQE-LGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~-l~~~~p~i~l 99 (458)
+..++|+|+|||||||+++.|++. ++ ++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG--FQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeH
Confidence 457999999999999999999999 66 556553
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=0.00047 Score=62.55 Aligned_cols=41 Identities=24% Similarity=0.160 Sum_probs=30.6
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
.+..++.-++++||||+|||+++..++..-+ .+.+.++...
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~v~~i~~~~ 55 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSG--KKVAYVDTEG 55 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHHC--SEEEEEESSC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHcC--CcEEEEECCC
Confidence 3566667899999999999999999998333 3455555443
No 130
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.19 E-value=0.00025 Score=63.81 Aligned_cols=32 Identities=38% Similarity=0.712 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
+..++|.|+|||||||+|+.|++.++ .+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~--~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG--IPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT--CCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CcEEeh
Confidence 35688999999999999999999998 556554
No 131
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.17 E-value=0.00022 Score=64.92 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.++|.|||||||||+|+.|++.++ .+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeeH
Confidence 478999999999999999999998 445443
No 132
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00025 Score=62.98 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
+..++|.|+|||||||+|+.|++.++ .+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG--YTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--CeEEe
Confidence 35789999999999999999999998 44443
No 133
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.13 E-value=0.0029 Score=58.05 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.-++++||+|+||||++..++..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4567889999999999999888766
No 134
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.13 E-value=0.00029 Score=64.36 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
+..++|.|+|||||||+|+.||+.++ .+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH--AAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC--CEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC--ceEEe
Confidence 35799999999999999999999998 44544
No 135
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.13 E-value=0.00028 Score=61.53 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..++|.|+|||||||+|+.|++.++ .+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG--YEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT--CEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CcEEc
Confidence 3689999999999999999999998 55655
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00071 Score=64.73 Aligned_cols=54 Identities=26% Similarity=0.307 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhcc---cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 46 VEAREAAGLVVDMIRQKK---MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 46 ~~~~~~l~~l~~~~~~~~---~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++....+...+...-.+. ..+..++|.||||+||||+|+.|+..++. .++.+++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~--~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEec
Confidence 444445544444333222 22456889999999999999999998842 2555554
No 137
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.12 E-value=0.0024 Score=60.53 Aligned_cols=128 Identities=23% Similarity=0.236 Sum_probs=87.6
Q ss_pred ceEEEEcccchhc-----------HHHHHHHHHHhhccCC--C-eEEEecCCccccccCCCCCCCCCCChhHhh--hhcc
Q 012719 299 PGVLFIDEVHMLD-----------MECFSYLNRALESSLS--P-IVIFATNRGICNIRGTDMNSPHGIPLDLLD--RLVI 362 (458)
Q Consensus 299 ~~Vl~IDE~~~l~-----------~~~~~~Ll~~lE~~~~--~-i~il~tn~~~~~~~~~~~~~~~~l~~~l~s--R~~~ 362 (458)
+.++|+||++.+. ....+.++..|+.... . +++.++ +.|..|.+++++ ||..
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~t------------n~p~~LD~al~r~gRfd~ 171 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAAT------------NRPDIIDPAILRPGRLDK 171 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEE------------SCGGGSCHHHHSTTSSCE
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeec------------CChhhCCHhhcCcccCCe
Confidence 5899999999863 1345667777765422 2 555566 677888999987 8865
Q ss_pred c-ccCCCCHHHHHHHHHHHHHhc-CCccC-HHHHHHHHHHh--hcCCHHHHHHhhHHHHHHHhhh-----------CCCC
Q 012719 363 I-RTQIYGPAEMIQILAIRAQVE-EIVLD-EESLAHLGEIA--RDTSLRHAVQLLYPASVVAKMN-----------GRDS 426 (458)
Q Consensus 363 i-~~~~~~~~e~~~il~~~~~~~-~~~i~-~~~l~~i~~~~--~~g~~r~a~~ll~~a~~~a~~~-----------~~~~ 426 (458)
. .++.++.++..+|++...+.. ....+ +-.++.++... ...+..+...+++.|...|... +...
T Consensus 172 ~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 251 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELK 251 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CC
T ss_pred EEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCe
Confidence 5 999999999999999876542 22332 22356666542 1456778888888877666532 2236
Q ss_pred ccHHHHHHHHHh
Q 012719 427 ICKADVEEVKAL 438 (458)
Q Consensus 427 it~~~v~~~~~~ 438 (458)
|+.+|+..|+.-
T Consensus 252 i~~~df~~al~~ 263 (274)
T 2x8a_A 252 VSHKHFEEAFKK 263 (274)
T ss_dssp BCHHHHHHHHTT
T ss_pred ecHHHHHHHHHH
Confidence 999999999873
No 138
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.11 E-value=0.00021 Score=63.23 Aligned_cols=25 Identities=48% Similarity=0.873 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++|.|+|||||||+++.|++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999987
No 139
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00029 Score=62.79 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
+..++|.|+|||||||+|+.|++.++ .+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcH
Confidence 35799999999999999999999998 445543
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.10 E-value=0.00025 Score=63.06 Aligned_cols=37 Identities=35% Similarity=0.640 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
++..+.+.||||+||||+++.|+..++ .+.+.+++.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~--~g~i~i~~d~ 44 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPG--VPKVHFHSDD 44 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS--SCEEEECTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccC--CCeEEEcccc
Confidence 456789999999999999999998754 4466665543
No 141
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.00034 Score=65.63 Aligned_cols=32 Identities=38% Similarity=0.570 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.+++.|||||||||+|+.||+.++ .+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~--~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG--WPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC--CCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC--CeEEeccH
Confidence 578999999999999999999998 45665544
No 142
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.10 E-value=0.00037 Score=64.35 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
..++|.|+|||||||+|+.||+.++ ++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC--VCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT--CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CceecH
Confidence 5799999999999999999999998 445543
No 143
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.08 E-value=0.00031 Score=62.27 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++|.|||||||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999886
No 144
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00028 Score=61.26 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.++|.|||||||||+|+.| +.++ .+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG--AKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC--CcEEEH
Confidence 5889999999999999999 8887 455553
No 145
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.07 E-value=0.00033 Score=62.60 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..++|.|+|||||||+|+.|++.++ .+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG--FTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT--CEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC--CeEEc
Confidence 5799999999999999999999998 44444
No 146
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.06 E-value=0.00031 Score=61.86 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEE
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFC 97 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i 97 (458)
+..++|.|+|||||||+|+.|++.++ .+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~--~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP--GSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST--TCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCEE
Confidence 35789999999999999999999998 4455
No 147
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.0004 Score=60.29 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.++|.|+|||||||+|+.|++.++ .+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN--IPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT--CCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEC
Confidence 588999999999999999999998 556653
No 148
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.03 E-value=0.00047 Score=60.36 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..++|.||||+||||+++.|+..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 346789999999999999999999887
No 149
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.03 E-value=0.00038 Score=63.69 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++|.|||||||||+++.||+.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999998
No 150
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.03 E-value=0.00045 Score=62.16 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..++|.|+||+||||+|+.|++.++ .+++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG--YPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT--CCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CEEEe
Confidence 4799999999999999999999997 44554
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.03 E-value=0.00036 Score=64.10 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
..++|.|+|||||||+|+.||+.++ .+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE--LKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS--SEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CeEEec
Confidence 5799999999999999999999997 445543
No 152
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.03 E-value=0.0018 Score=68.58 Aligned_cols=35 Identities=37% Similarity=0.405 Sum_probs=25.5
Q ss_pred cceEEEEcccchhcHHHHHHHHHHhhccCCCeEEEec
Q 012719 298 VPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFAT 334 (458)
Q Consensus 298 ~~~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~t 334 (458)
...+++|||+++++......|++.+. ...-+|+..
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~--~~~~liLvG 296 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALP--DHARVIFLG 296 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCC--TTCEEEEEE
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCC--CCCEEEEEc
Confidence 34799999999999888888888763 223445444
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.02 E-value=0.00057 Score=60.15 Aligned_cols=35 Identities=31% Similarity=0.634 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVG 101 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~ 101 (458)
++..+.|.|++|+||||+++.|+..+ + .|++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g--~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCC--CcEEEECC
Confidence 34678899999999999999999988 5 56776654
No 154
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.01 E-value=0.00039 Score=61.60 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..++|.|+|||||||+|+.|++.++ .+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG--WVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC--CEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CeEee
Confidence 4688999999999999999999998 44544
No 155
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.98 E-value=0.00036 Score=61.19 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhC
Q 012719 67 RALLLAGPPGTGKTALALGICQ-ELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~-~l~ 91 (458)
..++|.||||+||||+|+.|++ .++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 4688999999999999999998 444
No 156
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00099 Score=66.47 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=52.6
Q ss_pred CeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhcCCCCh--hhHHHH
Q 012719 192 DVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANARPQGG--QDILSL 262 (458)
Q Consensus 192 ~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~~~~g~--adl~~l 262 (458)
+.++|.++||.+..++.+..+.+|||. .+++|.| +...|.+|++... +. +++.++..|+|| +||.++
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~--~I~i~lP--d~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDR--KIEFPPP--SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCC--EEECCCC--CHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCce--EEEcCCc--CHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHH
Confidence 445666777788888888877888877 5666777 5566888776432 21 789999999998 999999
Q ss_pred HHhh
Q 012719 263 MGQM 266 (458)
Q Consensus 263 ~~~~ 266 (458)
|..+
T Consensus 362 ~~eA 365 (405)
T 4b4t_J 362 CTEA 365 (405)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 157
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.95 E-value=0.0014 Score=61.66 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGS 102 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~ 102 (458)
..++|.|+||+||||+|+.|+..+. ...+++.++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 4688999999999999999999842 12556655543
No 158
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.95 E-value=0.00048 Score=61.90 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..++|.|+|||||||+|+.|++.++ .+++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~ 45 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS--FVHLS 45 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS--CEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--ceEEe
Confidence 4688999999999999999999987 44544
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.93 E-value=0.00063 Score=61.17 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..+.|.||+|+||||+++.|+..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 346799999999999999999999986
No 160
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.91 E-value=0.021 Score=59.58 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHH
Q 012719 43 VGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 43 iG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+|.+..+..+..++.. .+....+.+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~--~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE--MCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHH--HTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc--ccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4999888876655422 1122235788999999999999999997
No 161
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.91 E-value=0.00055 Score=62.25 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.++|.|||||||||+|+.|++.++ .+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g--~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG--IPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeH
Confidence 488999999999999999999997 455554
No 162
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.89 E-value=0.023 Score=58.54 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=46.9
Q ss_pred eEEEEcccchhc----HHHHHHHHHHhhccCC-C-eEEEecCCccccccCCCCCCCC--CCChhHhhhhc-ccccCCCCH
Q 012719 300 GVLFIDEVHMLD----MECFSYLNRALESSLS-P-IVIFATNRGICNIRGTDMNSPH--GIPLDLLDRLV-IIRTQIYGP 370 (458)
Q Consensus 300 ~Vl~IDE~~~l~----~~~~~~Ll~~lE~~~~-~-i~il~tn~~~~~~~~~~~~~~~--~l~~~l~sR~~-~i~~~~~~~ 370 (458)
-|++|||++.+- .++.+.|.++....+. . .+|++|+ .|. .++..+++-|. .+.|.--+.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQ------------rp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQ------------RPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEES------------CCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEec------------CCccccccHHHHhhcCCeEEEEcCCH
Confidence 589999998764 3455566666565554 2 5667884 343 57778888885 457877888
Q ss_pred HHHHHHHHH
Q 012719 371 AEMIQILAI 379 (458)
Q Consensus 371 ~e~~~il~~ 379 (458)
.+...++..
T Consensus 367 ~dsr~ilg~ 375 (512)
T 2ius_A 367 IDSRTILDQ 375 (512)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhcCC
Confidence 888887753
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.86 E-value=0.0023 Score=62.92 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=49.0
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchh----hhh---------hHHHHHHHHHHHhc-
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSE----VKK---------TEILMENFRRAIGL- 125 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~----~~~---------~~~l~~~f~~a~~~- 125 (458)
.|..++.-++++||||+|||++|..++..+. ...+.+.++........ .|- ...+.+.+..+..+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 4666677899999999999999999987651 11234444443322211 110 00112222222211
Q ss_pred cccCCceEEEccccccCc
Q 012719 126 RIKENKEVYEGEVTELSP 143 (458)
Q Consensus 126 ~~~~~~ii~iDE~d~l~~ 143 (458)
....|.++++|++.++.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 124599999999999985
No 164
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0017 Score=65.22 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=52.4
Q ss_pred CeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhcCCCCh--hhHHHH
Q 012719 192 DVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANARPQGG--QDILSL 262 (458)
Q Consensus 192 ~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~~~~g~--adl~~l 262 (458)
+.++|.++||.+..++.+..+.+|||. .++++.| +...|.+|++... +. +++.++..|+|| +||.++
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~--~I~v~lP--d~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDR--KILFENP--DLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEE--EECCCCC--CHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeE--EEEcCCc--CHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 345555677788888888888888877 4566777 5566888776432 22 789999999998 999999
Q ss_pred HHhh
Q 012719 263 MGQM 266 (458)
Q Consensus 263 ~~~~ 266 (458)
|..+
T Consensus 396 ~~eA 399 (437)
T 4b4t_I 396 CTEA 399 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 165
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=0.00072 Score=62.04 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
.++|.|||||||||+|+.|++.++ .+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEc
Confidence 478999999999999999999997 44444
No 166
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.79 E-value=0.00073 Score=60.82 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+..++|.|+|||||||+|+.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 356889999999999999999999974
No 167
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.79 E-value=0.00052 Score=60.77 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++|.|+|||||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999885
No 168
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.0011 Score=60.51 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.|.||+||||||+++.|++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999988
No 169
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.72 E-value=0.0012 Score=58.59 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCCccEEEec
Q 012719 68 ALLLAGPPGTGKTALALGICQEL---GSKVPFCPMV 100 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~ 100 (458)
.+.|.|+|||||||+++.|++.+ + ++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g--~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG--YFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 47899999999999999999988 5 5566553
No 170
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.72 E-value=0.0011 Score=64.22 Aligned_cols=37 Identities=30% Similarity=0.563 Sum_probs=30.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
..++++||+|||||++|+.||+.++ .+++.++...++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~qvy 42 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP--CELISVDSALIY 42 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTTTTB
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccchhhh
Confidence 4688999999999999999999998 567777665443
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.70 E-value=0.0014 Score=61.28 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
+..+.|.|++|+||||+++.||..++ .+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC--CcEEeC
Confidence 46899999999999999999999998 456654
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.69 E-value=0.0012 Score=59.29 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.4
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++..+.|.||+|+||||+++.|+..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446788999999999999999999884
No 173
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.69 E-value=0.0011 Score=60.04 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=28.2
Q ss_pred HHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 54 LVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 54 ~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.+++.+.....++..+.+.||+|+||||+++.|+..+.
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33344433334456788999999999999999999885
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.68 E-value=0.0033 Score=61.83 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=49.9
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchh----------------hhhhHHHHHHHHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSE----------------VKKTEILMENFRRAI 123 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~----------------~~~~~~l~~~f~~a~ 123 (458)
.|..++.-++++||||+|||+||..++..+. ...+.+.++..+..... ....+.+...++...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 4666677899999999999999999998762 11345555554432211 001111112222221
Q ss_pred hccccCCceEEEccccccCc
Q 012719 124 GLRIKENKEVYEGEVTELSP 143 (458)
Q Consensus 124 ~~~~~~~~ii~iDE~d~l~~ 143 (458)
....+.++++|.+.++.+
T Consensus 136 --~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 --RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp --HTSCCSEEEEECTTTCCC
T ss_pred --hhcCCCeEEehHhhhhcC
Confidence 124589999999999886
No 175
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.68 E-value=0.00079 Score=66.01 Aligned_cols=30 Identities=30% Similarity=0.692 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
.+++|+||||+|||+++++||..++ .+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~--~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN--EKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH--HHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC--CCeee
Confidence 3799999999999999999999997 45643
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.68 E-value=0.0011 Score=59.43 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEec
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~ 100 (458)
+..+.|.|++||||||+++.|++.++ ..+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~-g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIP-ANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSC-GGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC-CCceEEEe
Confidence 35789999999999999999999882 15566543
No 177
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.66 E-value=0.0012 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 68 ALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.+.|.|+|||||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5789999999999999999999983
No 178
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.66 E-value=0.01 Score=53.05 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEe
Q 012719 67 RALLLAGPPGTGKTALALGICQEL---GSKVPFCPM 99 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l 99 (458)
..+++|+++|.||||.|-++|... |.++-|+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 368899999999999999998755 555555544
No 179
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.63 E-value=0.047 Score=62.15 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=36.2
Q ss_pred ccccccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHH
Q 012719 38 LAAGFVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 38 ~l~~liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
....++|.+.....+..++ .......+-+.++|+.|+|||+||+.++..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l---~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKL---WKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHH---HTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCceeccHHHHHHHHHHHH---hhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4567999998887665443 332233356889999999999999988754
No 180
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.63 E-value=0.0052 Score=60.52 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=49.8
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchhh----h------------hhHHHHHHHHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSEV----K------------KTEILMENFRRAI 123 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~~----~------------~~~~l~~~f~~a~ 123 (458)
.|..+++.++++||||+|||++|..+|..+. ...+.+.++......... + ..+.+.+.++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 4666677899999999999999999987651 113455555532221110 0 1122333333222
Q ss_pred hccccCCceEEEccccccCc
Q 012719 124 GLRIKENKEVYEGEVTELSP 143 (458)
Q Consensus 124 ~~~~~~~~ii~iDE~d~l~~ 143 (458)
+...+.+|++|.+..+.+
T Consensus 138 --~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 --RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp --HHTCCSEEEEECGGGCCC
T ss_pred --hccCCCEEEEcCHHHhcc
Confidence 124589999999999886
No 181
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.62 E-value=0.0022 Score=62.43 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=31.5
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCC-------CccEEEecCCc
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGS-------KVPFCPMVGSE 103 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-------~~p~i~l~~~~ 103 (458)
.|..++.-++++||||+|||++|..+|..+.. ..+.+.++...
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45556678999999999999999999987521 23455565544
No 182
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.60 E-value=0.0011 Score=59.66 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.7
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.+++.++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456899999999999999999999874
No 183
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.60 E-value=0.0015 Score=60.25 Aligned_cols=38 Identities=32% Similarity=0.573 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccchhh
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYSSEV 109 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~~~~ 109 (458)
.+-|.||||+||||+|+.|++.++ ++ .++..++....+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g--~~--~is~gdllR~~~ 47 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG--IP--QISTGDMLRAAV 47 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CC--EECHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC--CC--eeechHHHHHhc
Confidence 467899999999999999999998 33 445555555443
No 184
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.60 E-value=0.0015 Score=57.98 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQEL---GSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l 99 (458)
-+.|.|++||||||+++.|++.+ + ++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g--~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC--C-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEe
Confidence 37899999999999999999998 6 445543
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0013 Score=58.12 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+++-+.|.||+|+||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999999764
No 186
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.58 E-value=0.00098 Score=60.12 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..++|.|+|||||||+++.|++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999886
No 187
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.56 E-value=0.0059 Score=60.36 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=50.0
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhC-CCccEEEecCCcccchhh----------------hhhHHHHHHHHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELG-SKVPFCPMVGSEVYSSEV----------------KKTEILMENFRRAI 123 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-~~~p~i~l~~~~~~~~~~----------------~~~~~l~~~f~~a~ 123 (458)
.|..++.-++++||||+|||++|..++..+. ...+.+.++......... ...+.+.+.++...
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 4666677899999999999999999987651 113445554433222111 01122223333222
Q ss_pred hccccCCceEEEccccccCcc
Q 012719 124 GLRIKENKEVYEGEVTELSPE 144 (458)
Q Consensus 124 ~~~~~~~~ii~iDE~d~l~~~ 144 (458)
+...+.+|++|.+..+.+.
T Consensus 149 --~~~~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 149 --RSGAIDVVVVDSVAALTPR 167 (366)
T ss_dssp --TTTCCSEEEEECTTTCCCS
T ss_pred --hcCCCCEEEEeChHHhccc
Confidence 1245899999999999863
No 188
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.55 E-value=0.0013 Score=59.00 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.+.+.|++||||||+++.|+. ++ ++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG--AYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT--CEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC--CEEEEc
Confidence 588999999999999999999 87 555553
No 189
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.55 E-value=0.0014 Score=60.94 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..+.|.||+|+||||+++.|++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999997
No 190
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.54 E-value=0.0018 Score=59.86 Aligned_cols=25 Identities=36% Similarity=0.783 Sum_probs=23.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.+.||||+||||+++.||+.++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999999998
No 191
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.53 E-value=0.0019 Score=60.93 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=24.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++..+++.||+|+||||++++++..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4556789999999999999999998774
No 192
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0031 Score=63.76 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=51.0
Q ss_pred EEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcCH-------hhHHHHhcCCCCh--hhHHHHHH
Q 012719 194 IYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL-------HDLDAANARPQGG--QDILSLMG 264 (458)
Q Consensus 194 v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~l-------~~l~~~~~~~~g~--adl~~l~~ 264 (458)
++|.++||.+..++.+..+.+|||. .+++|.| +...|.+|++.... .|++.++..|+|| +||.++|.
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~--~I~i~lP--d~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDR--KVEIPLP--NEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEE--EECCCCC--CHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred eEEEEecCCchhhCHHHhCCCccce--eeecCCc--CHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 3444566788888888888888877 5666666 55668888765332 2789999999998 99999886
Q ss_pred hh
Q 012719 265 QM 266 (458)
Q Consensus 265 ~~ 266 (458)
.+
T Consensus 397 eA 398 (437)
T 4b4t_L 397 EA 398 (437)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 193
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.51 E-value=0.0068 Score=58.37 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=50.4
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCC---CccEEEecCCcccchhh----h------------hhHHH-HHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGS---KVPFCPMVGSEVYSSEV----K------------KTEIL-MENFR 120 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~---~~p~i~l~~~~~~~~~~----~------------~~~~l-~~~f~ 120 (458)
.|..++ .++++||||+|||+||..++..+.. ....+.++..+-..... | ..+.+ .+..+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 455554 6889999999999998888765521 23466666654332210 0 01112 22222
Q ss_pred HHHhccccCCceEEEccccccCcc
Q 012719 121 RAIGLRIKENKEVYEGEVTELSPE 144 (458)
Q Consensus 121 ~a~~~~~~~~~ii~iDE~d~l~~~ 144 (458)
.....+...|.++++|-+.++.+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHhhccCceEEEEecccccccc
Confidence 222234567999999999999864
No 194
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0016 Score=57.59 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..++|.|+||+||||+++.|+..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999999884
No 195
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0034 Score=63.55 Aligned_cols=71 Identities=8% Similarity=0.076 Sum_probs=51.5
Q ss_pred CeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhcCCCCh--hhHHHH
Q 012719 192 DVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANARPQGG--QDILSL 262 (458)
Q Consensus 192 ~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~~~~g~--adl~~l 262 (458)
+.++|.++||.+..++.+..+.+|||. .++++.| +...|.+|++... +. +++.++..|+|| +||.++
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~--~I~i~lP--d~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l 422 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDR--KVEFSLP--DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSV 422 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCE--EECCCCC--CHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccE--EEEeCCc--CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHH
Confidence 345555667788888877777788876 5666666 5566888776432 22 788999999998 999999
Q ss_pred HHhh
Q 012719 263 MGQM 266 (458)
Q Consensus 263 ~~~~ 266 (458)
|..+
T Consensus 423 ~~eA 426 (467)
T 4b4t_H 423 CTEA 426 (467)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 196
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.50 E-value=0.0021 Score=62.68 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcccc-----h---hh-hhhHHHHHHHHHHHhccccCCceEEE
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVYS-----S---EV-KKTEILMENFRRAIGLRIKENKEVYE 135 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~~-----~---~~-~~~~~l~~~f~~a~~~~~~~~~ii~i 135 (458)
++..+++.||+|+||||++++++..+...--.+.+.+..... . ++ +.....+.++..|.. ..|.++++
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~---~~p~ilil 246 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR---MRPDRIIL 246 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT---SCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhh---hCCCEEEE
Confidence 345899999999999999999999886554566665543211 1 11 011233444555543 46999999
Q ss_pred ccccc
Q 012719 136 GEVTE 140 (458)
Q Consensus 136 DE~d~ 140 (458)
||..+
T Consensus 247 dE~~~ 251 (330)
T 2pt7_A 247 GELRS 251 (330)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99764
No 197
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.48 E-value=0.002 Score=57.81 Aligned_cols=30 Identities=30% Similarity=0.665 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.+.+.|++||||||+++.||+.++ ++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg--~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG--VPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--Cceecc
Confidence 688999999999999999999998 556653
No 198
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.48 E-value=0.0013 Score=59.42 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..++|.|+|||||||+++.|++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999875
No 199
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.45 E-value=0.0021 Score=60.04 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.+.|++||||||+|+.|+..++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5688999999999999999999988
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.40 E-value=0.0019 Score=57.85 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.+.++|++||||||+++.|++.+| ++++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg--~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG--AHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--CEEEEC
Confidence 366899999999999999999988 556653
No 201
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.39 E-value=0.0019 Score=58.16 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
.+.|.||+||||||+++.|+. +| .+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg--~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG--VPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT--CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC--Ccccc
Confidence 578999999999999999998 66 45554
No 202
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.34 E-value=0.0019 Score=58.51 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345788999999999999999998875
No 203
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.33 E-value=0.0027 Score=60.98 Aligned_cols=37 Identities=35% Similarity=0.603 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCccc
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEVY 105 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~~ 105 (458)
.-+++.||+|||||++|..||+.++ .+++..+.-.++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~qvY 47 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP--VELISVDSALIY 47 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCTTTTB
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC--CcEEeccccccc
Confidence 4678899999999999999999987 456666554443
No 204
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.33 E-value=0.0017 Score=58.12 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 65 AGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
++..+.|.||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578899999999999999999877
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.33 E-value=0.011 Score=57.87 Aligned_cols=43 Identities=16% Similarity=0.018 Sum_probs=30.9
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhC-------CCccEEEecCCc
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELG-------SKVPFCPMVGSE 103 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-------~~~p~i~l~~~~ 103 (458)
.|..++.-++++||||+|||++|..+|...- ...+.+.++...
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3455566788999999999999999998731 123455665544
No 206
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.31 E-value=0.002 Score=62.77 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
..+++.||+|||||+|+..||+.++ .+++..+.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC--CcEEcccccc
Confidence 4688999999999999999999997 4566665543
No 207
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0038 Score=63.06 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=52.6
Q ss_pred CeEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----Hh---hHHHHhcCCCCh--hhHHHH
Q 012719 192 DVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----LH---DLDAANARPQGG--QDILSL 262 (458)
Q Consensus 192 ~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l~---~l~~~~~~~~g~--adl~~l 262 (458)
+.++|.++||.+..++.+..+.+|||. .+++|.| +...|.+|++... +. +++.++..|+|| +||.++
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~--~I~i~lP--d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDR--KIEFPLP--SEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEE--EEECCCC--CHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeE--EEEeCCc--CHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 345566777788888888888888877 5566666 5566888776533 21 788999999997 999999
Q ss_pred HHhh
Q 012719 263 MGQM 266 (458)
Q Consensus 263 ~~~~ 266 (458)
|..+
T Consensus 395 ~~eA 398 (434)
T 4b4t_M 395 TVEA 398 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 208
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.27 E-value=0.0026 Score=56.67 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
|.++|+||+|+|||||++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999988764
No 209
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.26 E-value=0.0025 Score=57.01 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.-+.|.||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578899999999999999999885
No 210
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0024 Score=57.01 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
..+.+.|++||||||+++.|++. + ++++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g--~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-G--YPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-T--CCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-C--CEEEcc
Confidence 56889999999999999999997 6 556653
No 211
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.24 E-value=0.0034 Score=58.64 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=24.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..+.+.||+||||||+++.||+.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999998
No 212
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.0043 Score=56.93 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=26.3
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+..++.-++|+||||+|||++++.++...
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3466667789999999999999999999853
No 213
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.20 E-value=0.0027 Score=57.72 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=25.0
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++..++++||||+|||++++.++..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55566789999999999999999999765
No 214
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.20 E-value=0.0023 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++|.||+|+||||+++.|+...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 578999999999999999998653
No 215
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.17 E-value=0.0036 Score=61.73 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=42.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC--ccEEEecC-Ccccc---------hhhhhhH-HHHHHHHHHHhccccCCceE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSK--VPFCPMVG-SEVYS---------SEVKKTE-ILMENFRRAIGLRIKENKEV 133 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~--~p~i~l~~-~~~~~---------~~~~~~~-~l~~~f~~a~~~~~~~~~ii 133 (458)
..+++.||+|+||||+.++++..++.. ..++.+.. .++.. ..++... .+.+.+..+.. ..|.++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~---~~Pdvi 200 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR---EDPDII 200 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT---SCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh---hCcCEE
Confidence 368999999999999999999887421 22222221 11111 1111111 24445555553 569999
Q ss_pred EEcccc
Q 012719 134 YEGEVT 139 (458)
Q Consensus 134 ~iDE~d 139 (458)
++||.-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999984
No 216
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.16 E-value=0.0027 Score=56.25 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999874
No 217
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.14 E-value=0.0034 Score=56.96 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..+.+.|++|||||++++.|+..++ ++++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS--MIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT--CEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--Cceec
Confidence 4688999999999999999999998 55555
No 218
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.13 E-value=0.0037 Score=56.70 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=24.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..+.|.|++||||||+++.|+. ++ .+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg--~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LG--INVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TT--CEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC--CEEEE
Confidence 4688999999999999999998 76 44554
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.11 E-value=0.0035 Score=56.73 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..++|.|+||+||||+++.|+..++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345788999999999999999999874
No 220
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.11 E-value=0.0027 Score=60.73 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..++|.|+|||||||+|+.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999999974
No 221
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.11 E-value=0.0045 Score=57.04 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
+..+.+.|++||||||+++.|+..++ ++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG--FTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC--CEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC--Cceec
Confidence 45788999999999999999999998 44544
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.09 E-value=0.0031 Score=56.57 Aligned_cols=26 Identities=38% Similarity=0.670 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++.+.|.||+|+||||+++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999998764
No 223
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.09 E-value=0.0027 Score=57.12 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.-+.+.||+|+||||+++.|+..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999977
No 224
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.00 E-value=0.014 Score=58.39 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=31.0
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhC-------CCccEEEecCCc
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELG-------SKVPFCPMVGSE 103 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~-------~~~p~i~l~~~~ 103 (458)
..|..++.-++|+||||+|||+|++.++...- .....+.++..+
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 34566677899999999999999998774432 122366666554
No 225
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.00 E-value=0.0033 Score=57.21 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=26.5
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.+..++.-+.+.||+|+||||+++.++..+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4666667899999999999999999998653
No 226
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.00 E-value=0.017 Score=68.19 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=49.3
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHh-CCCccEEEecCCcccchhhh----------------hhHHHHHHHHHHHh
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQEL-GSKVPFCPMVGSEVYSSEVK----------------KTEILMENFRRAIG 124 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l-~~~~p~i~l~~~~~~~~~~~----------------~~~~l~~~f~~a~~ 124 (458)
+..++++++++||||||||++|.+++.+. ....+...++..+....-.. ..+......+....
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 45667899999999999999999998755 11133444444433221110 01111121221111
Q ss_pred ccccCCceEEEccccccCccc
Q 012719 125 LRIKENKEVYEGEVTELSPEE 145 (458)
Q Consensus 125 ~~~~~~~ii~iDE~d~l~~~~ 145 (458)
...|.++++|++.++.+..
T Consensus 1157 --~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1157 --SGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp --HTCCSEEEESCGGGCCCHH
T ss_pred --hCCCCEEEECCcccccccc
Confidence 2459999999999997754
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.99 E-value=0.013 Score=68.24 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=51.6
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHhCC-CccEEEecCCcccchh----hh---------hhHHHHHHHHHHHh-cc
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQELGS-KVPFCPMVGSEVYSSE----VK---------KTEILMENFRRAIG-LR 126 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~-~~p~i~l~~~~~~~~~----~~---------~~~~l~~~f~~a~~-~~ 126 (458)
|..++..++++||||+|||++|..+|..+.. ..++..++..+..... .+ ....+.+.+..+.. ..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 5666788999999999999999999886621 1345666654433211 11 00012233333321 11
Q ss_pred ccCCceEEEccccccCc
Q 012719 127 IKENKEVYEGEVTELSP 143 (458)
Q Consensus 127 ~~~~~ii~iDE~d~l~~ 143 (458)
...|.++++|++..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 25699999999999985
No 228
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.99 E-value=0.0042 Score=59.79 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
.-+++.||+|||||++|..||+.++ ..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc--cceeecCcc
Confidence 3578899999999999999999987 345554443
No 229
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.98 E-value=0.0042 Score=60.55 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
.-+++.||+|||||++|..||+.++ ..++..+.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 3688999999999999999999997 445555443
No 230
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.96 E-value=0.008 Score=51.95 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=26.0
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.-...++..+.|.||.|+||||++++++..+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3344555678899999999999999999988
No 231
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.95 E-value=0.0086 Score=53.68 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 65 AGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
++.-+.+.||+|+||||+++.|+..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999987
No 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.0049 Score=56.64 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=25.8
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..|..++..++++||||+|||+++..++..+
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566677789999999999999998887654
No 233
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0047 Score=62.24 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=61.2
Q ss_pred CCchhhHHHHHHhhccccccccccCChhHHHHHhhhccccCCeEEEeccCcccccCCcccccccccccccccccc-CCCc
Q 012719 151 GGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVP-LPKG 229 (458)
Q Consensus 151 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~-~p~~ 229 (458)
....+.++++|..| |++. ...+ ++|.++||.+..++.+..+.+|||. .+++| .|
T Consensus 290 ~~~~r~l~~lL~~l----------------dg~~----~~~~-v~vI~aTN~~~~LD~AllRpGRfd~--~I~~p~lP-- 344 (428)
T 4b4t_K 290 REVQRILIELLTQM----------------DGFD----QSTN-VKVIMATNRADTLDPALLRPGRLDR--KIEFPSLR-- 344 (428)
T ss_dssp CHHHHHHHHHHHHH----------------HHSC----SSCS-EEEEEEESCSSSCCHHHHSSSSEEE--EEECCSSC--
T ss_pred hHHHHHHHHHHHHh----------------hCCC----CCCC-EEEEEecCChhhcChhhhcCCcceE--EEEcCCCC--
Confidence 34467777777653 3332 2233 4555677788888888877888876 34454 45
Q ss_pred chHHHHHHHhhcC----Hh---hHHHHhcCCCCh--hhHHHHHHhh
Q 012719 230 EVHKKKEIVQDVT----LH---DLDAANARPQGG--QDILSLMGQM 266 (458)
Q Consensus 230 ~~~~r~~i~~~~~----l~---~l~~~~~~~~g~--adl~~l~~~~ 266 (458)
+...|..+++... +. +++.++..|+|| +||.++|..+
T Consensus 345 d~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 345 DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp CHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5566877776532 21 789999999998 9999998764
No 234
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.92 E-value=0.01 Score=56.62 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.+.-+.+.||+|+||||+|+.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345677999999999999999999885
No 235
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.92 E-value=0.0031 Score=56.57 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++.++|.||+|+|||++|..|++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999998764
No 236
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.91 E-value=0.011 Score=57.20 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++.-+.+.||+|+||||+++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3445678999999999999999999885
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.90 E-value=0.0051 Score=55.25 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+++-++|.||+|+|||||++.|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356789999999999999999998764
No 238
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.90 E-value=0.08 Score=55.53 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 42 FVGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 42 liG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.-......++..+.+.+..+. +++++.+|+|+|||..+-.++..+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~---~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGK---KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTC---SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCC---CceEEEecCCCChHHHHHHHHHHH
Confidence 3445556666666666665543 478999999999999988887765
No 239
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.89 E-value=0.0041 Score=57.37 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=23.5
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHH
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+..++.-+.+.||+|+||||+++.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455667899999999999999999984
No 240
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.84 E-value=0.0048 Score=58.69 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=24.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
..+.+.|++||||||+|+.|+ .++ ++++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg--~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLG--AYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHT--CEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC--CcEEeh
Confidence 458899999999999999999 576 455543
No 241
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.83 E-value=0.0048 Score=55.58 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..+.+.||+|+||||+++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999886
No 242
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.82 E-value=0.0087 Score=57.56 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.4
Q ss_pred HHHHHhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 56 VDMIRQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 56 ~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
++-+.-...++..+.|+||+|+|||||++.|+..+
T Consensus 116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34445566677789999999999999999999987
No 243
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.79 E-value=0.0055 Score=56.39 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+.-++|.||||+||||+++.|++.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 456889999999999999999999863
No 244
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.76 E-value=0.028 Score=51.79 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
..+++.||+|+|||.+|.+++..++ .+.+.+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~--~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS--TPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC--SCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC--CCEEEEeCC
Confidence 3599999999999999999998885 345555544
No 245
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.76 E-value=0.063 Score=39.05 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCC-ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 375 QILAIRAQVEEI-VLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 375 ~il~~~~~~~~~-~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
+.+..+.++.|+ .+++.+...+.+++ .|++..++.-|..+|...|+.+|+.+||+-|+..-+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~----~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFT----FRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 345566677788 69999999999999 789999999999999999999999999999887543
No 246
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.69 E-value=0.0076 Score=60.03 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.-+++.||+|+|||++|..||+.++ ..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~--~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT--EEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC--CeEeecCc
Confidence 4578999999999999999999997 34555443
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.69 E-value=0.0065 Score=54.77 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=23.7
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++.-+.|.||+|+||||++++++..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445788999999999999999999874
No 248
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.68 E-value=0.0045 Score=62.35 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.-+++.|+||+||||+|+.|+..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35688999999999999999999887
No 249
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.67 E-value=0.0028 Score=57.17 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
-+.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999985
No 250
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.65 E-value=0.0087 Score=57.06 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=26.2
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.+..++.-+++.||||+|||++++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456666789999999999999999999877
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.63 E-value=0.0066 Score=55.36 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.++..+.|.||+|+||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999976
No 252
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.60 E-value=0.008 Score=54.13 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
..+.+.||+|||||++++.||+.|+ ++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg--~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN--IPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT--CCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC--cCEEC
Confidence 3688999999999999999999999 55664
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.56 E-value=0.0068 Score=57.34 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.2
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..++.-++++||||+|||+++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999765
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.53 E-value=0.008 Score=54.96 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=24.0
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++.-+.+.||+|+|||||.++|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456788999999999999999999875
No 255
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.52 E-value=0.011 Score=62.42 Aligned_cols=34 Identities=32% Similarity=0.658 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecC
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVG 101 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~ 101 (458)
+..++|.|+|||||||+|+.|++.+ + .+++.+++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G--~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEech
Confidence 4578999999999999999999998 6 56777754
No 256
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.46 E-value=0.01 Score=61.32 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
+.++++.||+|+||||++++++..+......+.+.+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 457999999999999999999998865444555444
No 257
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.45 E-value=0.048 Score=57.23 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=28.2
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++..+.+.||+|+||||+++.++..+.+.---+.+.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 44568899999999999999999988754322344433
No 258
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.44 E-value=0.012 Score=56.56 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
++..+.|.||+|+||||+++.+|..+...---+.+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 3467889999999999999999998854323444545443
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.43 E-value=0.0089 Score=53.32 Aligned_cols=25 Identities=44% Similarity=0.744 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3688999999999999999999873
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.42 E-value=0.0093 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.8
Q ss_pred CCceEEEEcCCCChHHHHHHHH
Q 012719 65 AGRALLLAGPPGTGKTALALGI 86 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~al 86 (458)
++.-+.+.||+|+||||+++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3457889999999999999963
No 261
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.42 E-value=0.012 Score=53.83 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=35.8
Q ss_pred CCCCCCChhHhhhhcccccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCH
Q 012719 347 NSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSL 405 (458)
Q Consensus 347 ~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~ 405 (458)
...+.+|+.+++++..+.+-.++++++.+.|+. -.+-..+.+-..+..+.+.+++
T Consensus 143 ~v~e~vpd~~~~~a~~v~lvD~~p~~l~~rl~~----g~vy~~~~~~~a~~~~f~~~nl 197 (228)
T 2r8r_A 143 QVRETLPDWVLQEAFDLVLIDLPPRELLERLRD----GKVYVPEQARAAIDAFFTQTNL 197 (228)
T ss_dssp CCCSCBCHHHHHTCSEEEEBCCCHHHHHHHHHT----TCCCCTTCCHHHHHHHCCHHHH
T ss_pred CcCCcCccHHHhhCCeEEEecCCHHHHHHHHHC----CCccChhHHHHHHHhhhchhhH
Confidence 445788999999998888888999997776542 2333344444455555433433
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.41 E-value=0.016 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.-+.+.||+|+||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35677999999999999999999876
No 263
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.39 E-value=0.03 Score=54.98 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEec
Q 012719 67 RALLLAGPPGTGKTALALGICQEL---GSKVPFCPMV 100 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~ 100 (458)
..+.|.|+||+||||++..|+..+ +.++.++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 478899999999999999999887 4444444444
No 264
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.39 E-value=0.013 Score=62.37 Aligned_cols=39 Identities=33% Similarity=0.548 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHH-HHHh
Q 012719 45 QVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGI-CQEL 90 (458)
Q Consensus 45 ~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~al-A~~l 90 (458)
.++.++++...+ .. ..-.|+.||||||||+++-.+ +..+
T Consensus 191 N~~Q~~AV~~al---~~----~~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 191 DTSQKEAVLFAL---SQ----KELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CHHHHHHHHHHH---HC----SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh---cC----CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 455666555333 21 125789999999999754444 4444
No 265
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.36 E-value=0.01 Score=55.05 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++.-+-+.||+|+||||+++.|+..++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999999999886
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.35 E-value=0.028 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++|.|++|+||||++..||..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999877
No 267
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.33 E-value=0.099 Score=60.26 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=24.6
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.++..+-+.||+|+||||+++.|.+.+.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccC
Confidence 34567889999999999999999987753
No 268
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.29 E-value=0.0093 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
++++||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999999999873
No 269
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.27 E-value=0.011 Score=54.44 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=24.2
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHH
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
.|..++.-++++|+||+|||++|..+|..
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 35666778999999999999999988753
No 270
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.26 E-value=0.0069 Score=55.53 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=17.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHH-HHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGIC-QELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA-~~l~ 91 (458)
.++.-+.|.||+|+||||+++.|+ ..+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345678899999999999999999 7753
No 271
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.26 E-value=0.012 Score=60.65 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=24.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+..++|.|++||||||+|++||+.|+.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999984
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.25 E-value=0.01 Score=58.27 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=26.2
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+..++.-+.++||||+|||++++.++..+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455566778999999999999999999876
No 273
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.21 E-value=0.055 Score=40.49 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 366 QIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 366 ~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
+.|+.++..+||+...++..+. ++--++.|++.+...+.....++++.|...|...+...||.+|+..|+.-..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4678999999999887765442 2335888999885568899999999999999988888999999999988544
No 274
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.018 Score=50.62 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCceEEEEcCCCChHHHHHHHHHHH
Q 012719 46 VEAREAAGLVVDMIRQK-KMAGRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 46 ~~~~~~l~~l~~~~~~~-~~~~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+.+.+..++.....+ ......+++.|++|+|||++...+...
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp HHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34444444443333222 223358999999999999999999864
No 275
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.14 E-value=0.048 Score=54.96 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=25.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEEEecCC
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNR 336 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~il~tn~ 336 (458)
.+++|||+..++.....+++..... ..+|+..++
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~~~---~~vilvGD~ 269 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMSLC---DIAYVYGDT 269 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHTTC---SEEEEEECT
T ss_pred CEEEEeCcccCCHHHHHHHHHhCCC---CEEEEecCc
Confidence 8999999999999998888876532 345555543
No 276
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.13 E-value=0.012 Score=54.36 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=23.9
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.-+.|.|++|+||||+++.|+..+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446788999999999999999999884
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.13 E-value=0.014 Score=57.56 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=25.2
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.++..+++.||+|+||||++++++..+..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 44568999999999999999999998764
No 278
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.08 E-value=0.026 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++|.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999998874
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.06 E-value=0.033 Score=53.92 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
-+.+.||+||||||+++.|+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 577899999999999999999885
No 280
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.02 E-value=0.014 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.-+.|.|++|+||||+++.|++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999885
No 281
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.90 E-value=0.011 Score=57.11 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=25.4
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.|..++.-++++||||+|||++|..+|...
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666778999999999999999999764
No 282
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.88 E-value=0.014 Score=53.81 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.|.|++|+||||+++.|++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999999984
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.84 E-value=0.017 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..+++.||+|+||||++..||..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4568899999999999999999887
No 284
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.82 E-value=0.017 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..+.|.||+|+||||+++.+|..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999999874
No 285
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.82 E-value=0.018 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.+.|.|++|+||||++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999887
No 286
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.81 E-value=0.018 Score=52.79 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEE
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCP 98 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~ 98 (458)
.+.+.|++|||||++|+.||+.++ ++++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg--~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELG--IHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT--CEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcC--CcEEc
Confidence 577899999999999999999998 45543
No 287
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.81 E-value=0.016 Score=55.48 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..++|.||+|+||||++..||..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999998773
No 288
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.78 E-value=0.014 Score=53.87 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=28.6
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 67 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE
Confidence 345678899999999999999999877543223444443
No 289
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.77 E-value=0.046 Score=53.74 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
+..++|.||+|+||||+++.||..+...---+.+.+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 457889999999999999999998742222344444443
No 290
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.76 E-value=0.015 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.-+.|.||+|+||||+++.|++.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999884
No 291
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.76 E-value=0.016 Score=51.08 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 69 LLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
+|++|++|||||++|..++.. + .|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~--~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A--PQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C--SSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-C--CCeEEEecCC
Confidence 689999999999999999977 5 5677776654
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.74 E-value=0.026 Score=54.48 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=26.1
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.|..++.-+++.|+||+|||++|..+|...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567777789999999999999999999765
No 293
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.72 E-value=0.011 Score=56.40 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
-+.+.||+|+||||+|+.|+..++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999875
No 294
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.72 E-value=0.024 Score=50.55 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=24.8
Q ss_pred CceEEEEcCCCChHH-HHHHHHHHHhCCCccEEEec
Q 012719 66 GRALLLAGPPGTGKT-ALALGICQELGSKVPFCPMV 100 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT-~lA~alA~~l~~~~p~i~l~ 100 (458)
++-+++|||.|+||| .|.+++.++.......+.++
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 346778999999999 89999887663333344443
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.70 E-value=0.019 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++.-+.|.||+|+||||+++.||..+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999873
No 296
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.69 E-value=0.018 Score=57.04 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++..+++.||+|+||||++++++..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445789999999999999999999874
No 297
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.69 E-value=0.014 Score=53.40 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
++..+.+.||.|+|||||.++++..+.+.---+.+.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 66 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGK 66 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 45578899999999999999999877533224444443
No 298
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.68 E-value=0.042 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++|+|+||+||||++..||..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999877
No 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.68 E-value=0.13 Score=57.35 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHH
Q 012719 43 VGQVEAREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 43 iG~~~~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+|.+.....+...+ ... ...+-+.++||.|+|||+||+.++.
T Consensus 131 VGRe~eLeeL~elL---~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQAL---LEL-RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHH---HHC-CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH---hcc-CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 89988887666544 221 1235788999999999999999985
No 300
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.66 E-value=0.02 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+.-+.|.|++|+||||+++.|++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457889999999999999999999975
No 301
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.59 E-value=0.033 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++|.||+|+||||++..||..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999877
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.59 E-value=0.024 Score=49.77 Aligned_cols=24 Identities=38% Similarity=0.392 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.-+.|.||+|+||||++..+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999876
No 303
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.56 E-value=0.017 Score=54.21 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=29.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 69 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN 69 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3455788999999999999999998875432345555433
No 304
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.55 E-value=0.02 Score=59.64 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.7
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++..+.|.|++||||||++++|+..++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3456789999999999999999999985
No 305
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=94.53 E-value=0.26 Score=39.40 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhhchHHHHHHHHHH
Q 012719 373 MIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYLDAKSSAKLLQEQ 452 (458)
Q Consensus 373 ~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~~~~~~~~~~~~~ 452 (458)
+.+|++......++.++++++..|+++. .+++..+..-+..+|.-.|+.+|+.+||.-++. ......++++.+
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~----~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R---r~~~L~~~l~~~ 105 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELT----FRQCENFAKDLEMFARHAKRTTINTEDVKLLAR---RSNSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH---hCHHHHHHHHHH
Confidence 3455556666668899999999999998 567788888888889889999999999997765 333344555544
Q ss_pred HH
Q 012719 453 QE 454 (458)
Q Consensus 453 ~~ 454 (458)
.+
T Consensus 106 ~~ 107 (113)
T 4dra_A 106 SE 107 (113)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 306
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.52 E-value=0.017 Score=52.51 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=27.9
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 34557889999999999999999987753322344444
No 307
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.43 E-value=0.053 Score=48.96 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+++.|++|+|||+++..++..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998763
No 308
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.40 E-value=0.023 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999999886
No 309
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.39 E-value=0.019 Score=53.46 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=28.4
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g 70 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 34567889999999999999999988754322444444
No 310
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.38 E-value=0.042 Score=49.55 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
-+.|.|+.|+||||+++.|++.|....+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 47789999999999999999999654555544
No 311
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.38 E-value=0.022 Score=59.01 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.-++|.|+||+||||+|+.||+.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999985
No 312
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.37 E-value=0.02 Score=53.16 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=24.6
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.++..+.+.||.|+|||||.++++..+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34567889999999999999999987753
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.35 E-value=0.021 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 67 RALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
..+.+.||.|+|||||.++++..+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46889999999999999999987753
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.34 E-value=0.027 Score=55.52 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=24.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
+..+.+.||+|+|||||++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999999999999863
No 315
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.33 E-value=0.022 Score=53.64 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=29.4
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
.++..+.+.||.|+|||||+++++..+...---+.+.+.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3456788999999999999999998875432344444433
No 316
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.32 E-value=0.021 Score=53.69 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=28.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 85 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 44567889999999999999999987754322444444
No 317
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.32 E-value=0.02 Score=53.57 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=28.2
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 68 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 34557889999999999999999988754322444444
No 318
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.29 E-value=0.026 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.-+.|.|++|+||||+++.|++.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999884
No 319
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.29 E-value=0.022 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
+..+.+.||.|+|||||+++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999986
No 320
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.27 E-value=0.038 Score=58.60 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999888777765
No 321
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.25 E-value=0.036 Score=56.35 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=25.6
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.|..++.-+++.|+||+|||+++..+|..+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666779999999999999999999865
No 322
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.23 E-value=0.022 Score=53.94 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=29.2
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCc
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~ 103 (458)
.++..+.+.||.|+|||||+++++..+.+.---+.+.+.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 3456788999999999999999998875432244554443
No 323
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.23 E-value=0.022 Score=53.71 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=29.4
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
..++..+.+.||.|+|||||+++|+..+.+.---+.+.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 81 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGE 81 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 3445678899999999999999999887543224444443
No 324
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.22 E-value=0.044 Score=53.39 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=26.2
Q ss_pred HHHHhcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 57 DMIRQKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 57 ~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.+.....++..+.|.||||+||||+.++++..+
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3333333445678899999999999999999876
No 325
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.20 E-value=0.01 Score=55.59 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.-++|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35688999999999999999999984
No 326
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.20 E-value=0.022 Score=52.56 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.8
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++..+.+.||.|+|||||+++++..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456788999999999999999997663
No 327
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.20 E-value=0.021 Score=53.28 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=28.9
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
.++..+.+.||.|+|||||.++++..+.+. --+.+.+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~ 61 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQ 61 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCE
Confidence 345678899999999999999999887543 34555443
No 328
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.029 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
...++|.|++|+|||+++..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998754
No 329
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.20 E-value=0.03 Score=56.25 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
++..+++.||+|+||||+.++++..++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3346889999999999999999999864
No 330
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.19 E-value=0.022 Score=52.67 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++..+.+.||.|+|||||.++++..+.+.---+.+.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 4557889999999999999999987753322344444
No 331
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.19 E-value=0.029 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+.-+.|.|++|+||||+++.|++.++
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999875
No 332
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=94.18 E-value=0.067 Score=40.98 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=59.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 364 RTQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 364 ~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
.-.||+.++..+||+...++..+. ++--++.|++.+...+...+.++++.|...|...+...|+.+|+..|+.-
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 346899999999999888765543 23337888888855688899999999999998888888999999998873
No 333
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.18 E-value=0.17 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.5
Q ss_pred CceEEEEcCCCChHHHHH-HHHH
Q 012719 66 GRALLLAGPPGTGKTALA-LGIC 87 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA-~alA 87 (458)
++++|+.||+|+|||..+ .++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999875 4343
No 334
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.17 E-value=0.025 Score=53.58 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=28.7
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 83 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE
Confidence 345678899999999999999999887543224444443
No 335
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.09 E-value=0.025 Score=52.92 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=28.2
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 76 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 34567889999999999999999987754322344444
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.07 E-value=0.02 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.+.||+|+||||+++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999999884
No 337
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.06 E-value=0.03 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999863
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.05 E-value=0.027 Score=55.32 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
++.-+.+.||+|||||||.+++|..+..
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 3457889999999999999999998754
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.03 E-value=0.027 Score=51.73 Aligned_cols=29 Identities=41% Similarity=0.580 Sum_probs=24.6
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
.++..+.+.||.|+|||||.++++..+.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34567889999999999999999987753
No 340
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.02 E-value=0.033 Score=56.92 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..++|.||+|+||||+++.|+..+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 45688999999999999999999874
No 341
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.02 E-value=0.028 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 012719 68 ALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++.+.||+|+|||||.++|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999999875
No 342
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.92 E-value=0.032 Score=54.91 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++..+.+.||+|+|||||.+++|..+.+.---+.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC
Confidence 3457889999999999999999987754322344444
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.91 E-value=0.032 Score=54.91 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++.-+.+.||+|||||||.+++|..+.+.---+.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDE 64 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 3457889999999999999999988754322344444
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.91 E-value=0.032 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+++.||+|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 368899999999999999998753
No 345
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.88 E-value=0.043 Score=56.90 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=29.3
Q ss_pred cccCCceEEEEcCCCChHHHHHHH--HHHHhCCCccEEEecCCc
Q 012719 62 KKMAGRALLLAGPPGTGKTALALG--ICQELGSKVPFCPMVGSE 103 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~a--lA~~l~~~~p~i~l~~~~ 103 (458)
+..++..+++.||+|+|||||++. ++..+...-.-+.+++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 456677899999999999999999 455543122355555543
No 346
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.87 E-value=0.029 Score=52.81 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=27.8
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++..+.+.||.|+|||||.++++..+.+.---+.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g 68 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC
Confidence 34557889999999999999999987753322344444
No 347
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.86 E-value=0.032 Score=54.75 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=27.9
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
.++.-+.+.||+|||||||.+++|..+.+.---+.+.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 34567889999999999999999987753322344443
No 348
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.86 E-value=0.045 Score=55.46 Aligned_cols=30 Identities=37% Similarity=0.445 Sum_probs=25.8
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.|..++.-+++.|+||+|||++|..+|...
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 566667778999999999999999998765
No 349
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.85 E-value=0.036 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..++|.||+|+||||++..||..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999877
No 350
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.85 E-value=0.033 Score=56.91 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..++|.|.||+||||+++.|++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999875
No 351
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.84 E-value=0.03 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+.+.||+|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368899999999999999998754
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.83 E-value=0.034 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 012719 65 AGRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
++..+.+.||.|+|||||.++++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999999986
No 353
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.80 E-value=0.029 Score=54.89 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
++..+.+.||+|||||||.+++|..+.+.---+.+.+.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~ 62 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGK 62 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCE
Confidence 44578899999999999999999877543224555443
No 354
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.79 E-value=0.035 Score=54.87 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++..+.+.||+|||||||.+++|..+...---+.+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 72 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 72 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECC
Confidence 4457889999999999999999987753322344444
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.79 E-value=0.036 Score=52.17 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=27.5
Q ss_pred ceEEEEcccch-hcHHHHHHHHHHhhccCC--CeEEEec
Q 012719 299 PGVLFIDEVHM-LDMECFSYLNRALESSLS--PIVIFAT 334 (458)
Q Consensus 299 ~~Vl~IDE~~~-l~~~~~~~Ll~~lE~~~~--~i~il~t 334 (458)
+.|+++||.-. |++.....+...+.+... ..+|++|
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 38999999876 788888888888877532 3566677
No 356
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.77 E-value=0.036 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGS 92 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~ 92 (458)
++.-+.|.||+|||||||.+++|..+..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 3457889999999999999999988754
No 357
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.75 E-value=0.03 Score=52.44 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++..+.+.||.|+|||||.++++..+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456789999999999999999998664
No 358
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.71 E-value=0.053 Score=52.80 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.9
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.|..++.-+++.|+||+|||++|..+|..+
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466777789999999999999999998765
No 359
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.69 E-value=0.035 Score=54.87 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++..+.+.||+|||||||.+++|..+...---+.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECC
Confidence 3457889999999999999999987754322344444
No 360
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.67 E-value=0.038 Score=46.85 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+++..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999863
No 361
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=93.66 E-value=0.5 Score=39.16 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 374 IQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 374 ~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
.+|.+..+...++.++++++..|+++. .+++..+..-+..+|...|+.+|+.+||.-++.
T Consensus 26 gkIvee~~~~~~~~vS~~ai~aL~El~----~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 26 GALAQDVAEDKGVLFSKQTVAAISEIT----FRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHTCEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 345555556678999999999999998 567888888888889889999999999997765
No 362
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.62 E-value=0.037 Score=58.00 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC--ccEEEec
Q 012719 67 RALLLAGPPGTGKTALALGICQELGSK--VPFCPMV 100 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~~~--~p~i~l~ 100 (458)
..++|.|+||+||||+|++|++.++.. .+++.++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 568899999999999999999998621 3455554
No 363
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.60 E-value=0.041 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999988753
No 364
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.54 E-value=0.079 Score=51.83 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=28.1
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCc
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGSKV 94 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~ 94 (458)
-....+..+.|.||+|+|||||.+.++..+....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 3444556899999999999999999999987543
No 365
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.53 E-value=0.04 Score=46.44 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 366
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.48 E-value=0.086 Score=53.28 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=31.0
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
-...++..+.+.||+|+|||||++.++.......-.+.+.+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 44555668999999999999999999999865433444433
No 367
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.45 E-value=0.064 Score=58.46 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
...++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999888877765
No 368
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.42 E-value=0.045 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999885
No 369
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.42 E-value=0.037 Score=51.66 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=24.0
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.++..+.+.||.|+|||||.++++..+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455788999999999999999998774
No 370
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.41 E-value=0.045 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 371
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.39 E-value=0.032 Score=53.63 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=29.4
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
..++..+.+.||+|+|||||++.|+..+.+.---|.+.+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~ 116 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCE
Confidence 3445689999999999999999999887543223444443
No 372
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.37 E-value=0.043 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|.+.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999974
No 373
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.34 E-value=0.031 Score=54.92 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
++.-+.+.||+|+|||||.+++|..+.+.---+.+.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 66 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Confidence 3457889999999999999999987753322344443
No 374
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.33 E-value=0.048 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++.+.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999998764
No 375
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.33 E-value=0.045 Score=46.83 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4799999999999999998863
No 376
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.32 E-value=0.24 Score=44.82 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=24.6
Q ss_pred eEEEEcccchhcHHHHHHHHHHhhccCCCeEE
Q 012719 300 GVLFIDEVHMLDMECFSYLNRALESSLSPIVI 331 (458)
Q Consensus 300 ~Vl~IDE~~~l~~~~~~~Ll~~lE~~~~~i~i 331 (458)
-+++|||++.++++..+.|..+. +...++++
T Consensus 103 dvV~IDEaQFf~~~~v~~l~~la-~~gi~Vi~ 133 (219)
T 3e2i_A 103 DVIGIDEVQFFDDEIVSIVEKLS-ADGHRVIV 133 (219)
T ss_dssp SEEEECCGGGSCTHHHHHHHHHH-HTTCEEEE
T ss_pred CEEEEechhcCCHHHHHHHHHHH-HCCCEEEE
Confidence 69999999999999999888887 44444444
No 377
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.31 E-value=0.035 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.630 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 012719 68 ALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~ 88 (458)
.+++.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999875
No 378
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.31 E-value=0.054 Score=48.98 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=24.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccEEEe
Q 012719 68 ALLLAGPPGTGKTALALGICQELGSKVPFCPM 99 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l 99 (458)
.+-++|..||||||+++.|++ +| +|++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g--~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RG--ASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC--CcEEEC
Confidence 577999999999999999998 77 556653
No 379
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.27 E-value=0.091 Score=49.20 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHH
Q 012719 48 AREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 48 ~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+...+..++............+++.|++|+|||++..++..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 21 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 34444444444443333335899999999999999999874
No 380
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.26 E-value=0.05 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 381
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.21 E-value=0.041 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=28.0
Q ss_pred ceEEEEcccch-hcHHHHHHHHHHhhccCCCeEEEec
Q 012719 299 PGVLFIDEVHM-LDMECFSYLNRALESSLSPIVIFAT 334 (458)
Q Consensus 299 ~~Vl~IDE~~~-l~~~~~~~Ll~~lE~~~~~i~il~t 334 (458)
+.++++||.-. |++.....+.+.+.+... .+|++|
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivt 182 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVT 182 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEE
Confidence 38999999876 688888888888887655 666677
No 382
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.20 E-value=0.097 Score=53.85 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=30.7
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHhCC--CccEEEecC
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQELGS--KVPFCPMVG 101 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~--~~p~i~l~~ 101 (458)
.|..++.-+++.|+||+|||++|..+|..+-. ..+++.++.
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 35666677999999999999999999987632 235555544
No 383
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.19 E-value=0.082 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+..+.+.|+||+||||++..|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 334678899999999999999999876
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.18 E-value=0.048 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 385
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.17 E-value=0.069 Score=54.10 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=25.8
Q ss_pred hcccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 61 QKKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 61 ~~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.|..++.-+++.|+||+|||++|..+|...
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 466667779999999999999999998765
No 386
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.16 E-value=0.052 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998763
No 387
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.15 E-value=0.052 Score=46.15 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999998853
No 388
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.09 E-value=0.051 Score=46.25 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 012719 68 ALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~ 88 (458)
.+++.|++|+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999863
No 389
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.06 E-value=0.055 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 012719 68 ALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~ 89 (458)
.+++.|++|+|||++...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 390
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.05 E-value=0.053 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999875
No 391
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.04 E-value=0.083 Score=50.50 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..+++.|++|+||||++..+|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999877
No 392
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.02 E-value=0.07 Score=55.55 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..++|.|++|+||||+|+.|++.++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 35688999999999999999999875
No 393
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.01 E-value=0.061 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
...+++.|++|+|||++...+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999864
No 394
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.01 E-value=0.057 Score=45.71 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 395
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.99 E-value=0.057 Score=45.77 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999876
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.98 E-value=0.052 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
+..++|.|+||+|||+|..+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999753
No 397
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.95 E-value=0.064 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
+..+.+.|++|+||||++..+|..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999999999999877
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.93 E-value=0.049 Score=46.21 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGIC 87 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA 87 (458)
-.+++.|++|+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999875
No 399
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.91 E-value=0.055 Score=56.05 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=27.2
Q ss_pred HhcccCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 60 RQKKMAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 60 ~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+..++..+++.||+|+|||+|++.++..+.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44666777899999999999999999998763
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.90 E-value=0.058 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|+..+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999886
No 401
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.87 E-value=0.06 Score=52.95 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=29.7
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCCcc
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGSEV 104 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~~~ 104 (458)
.++..+.+.||+|+|||||.++++..+.+.---+.+.+.++
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i 92 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 34567889999999999999999987754322455554433
No 402
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.86 E-value=0.16 Score=49.63 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
...+.|.|+||+|||||..+|+..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999876
No 403
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.84 E-value=0.072 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
...+++.|++|+|||+|...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999865
No 404
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.80 E-value=0.058 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|.+.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 405
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.79 E-value=0.12 Score=48.14 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcccCCceEEEEcCCCChHHHHHHHHHH
Q 012719 48 AREAAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 48 ~~~~l~~l~~~~~~~~~~~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
....+..+++...........+++.|++|+|||++..++..
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 18 TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33444444444444333346899999999999999999875
No 406
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=92.78 E-value=0.13 Score=38.85 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 368 YGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 368 ~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
++.++..+||+...++..+. ++--++.|++.+...+.....++++.|...|...+...||.+|+..|+.-
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKT 70 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 46788999999888766543 23347888888855688889999999999998888888999999999883
No 407
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.77 E-value=0.084 Score=54.29 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEe
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL---GSKVPFCPM 99 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l 99 (458)
++.++|.|+||+||||++..||..+ +.++-++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4578999999999999999999877 444444443
No 408
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.75 E-value=0.064 Score=46.46 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999853
No 409
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.74 E-value=0.061 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999875
No 410
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.73 E-value=0.065 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 012719 69 LLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l 90 (458)
+.|.|+.||||||+++.|++.|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999988
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.70 E-value=0.07 Score=45.33 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 012719 68 ALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~~l 90 (458)
-.+++||.|+|||++..|+.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999776
No 412
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.68 E-value=0.062 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
No 413
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.66 E-value=0.062 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999863
No 414
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.66 E-value=0.053 Score=51.70 Aligned_cols=27 Identities=44% Similarity=0.642 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..+.+.||.|+|||||.++++..+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456788999999999999999998764
No 415
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.65 E-value=0.06 Score=53.51 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.4
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
.++.-+.|.||+|||||||.++|+..+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 445678999999999999999999755
No 416
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.64 E-value=0.066 Score=46.68 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+++..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999863
No 417
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.64 E-value=0.067 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998763
No 418
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.62 E-value=0.06 Score=46.21 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|..++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998853
No 419
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.61 E-value=0.065 Score=45.99 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|..++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998864
No 420
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.055 Score=55.09 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=24.8
Q ss_pred cccCCceEEEEcCCCChHHHHHHHHHHHh
Q 012719 62 KKMAGRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 62 ~~~~~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
...++..+.+.||.|+|||||++.|+..+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33455689999999999999999999876
No 421
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=92.56 E-value=0.83 Score=36.25 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 375 QILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 375 ~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+|++......+..++++++..|.++. .+++..+..-+..+|...|+.+|+.+||.-++.
T Consensus 27 rI~~~~g~~~~~~vs~~~i~aL~E~~----~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 27 CLCQDVAEDKGVLFSKQTVAAISEIT----FRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHTCEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHhhhcCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 34444444556789999999999988 668888999899999999999999999997766
No 422
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.54 E-value=0.11 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.637 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
+++++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 579999999999999999999874
No 423
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.53 E-value=0.07 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 424
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.48 E-value=0.072 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999999885
No 425
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.48 E-value=0.072 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|..++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999874
No 426
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.47 E-value=0.073 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.44 E-value=0.069 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 428
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.43 E-value=0.11 Score=52.06 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+.|.||+|+||||+.++|+....
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3688999999999999999998653
No 429
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=92.42 E-value=0.25 Score=37.88 Aligned_cols=71 Identities=8% Similarity=0.038 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHhhh
Q 012719 369 GPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKALYL 440 (458)
Q Consensus 369 ~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~~~ 440 (458)
+.++..+||+...++..+. ++--++.|++.+...+...+.+++..|...|...+...||.+|+..|+.-..
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 4567888999887766554 2334788999885568889999999999999988888999999999998443
No 430
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.39 E-value=0.056 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
++++||.|++|+|||++|..+..
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999988764
No 431
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.37 E-value=0.076 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
...+++.|++|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999998853
No 432
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.35 E-value=0.077 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999998753
No 433
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.32 E-value=0.078 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999875
No 434
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.27 E-value=0.044 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
+.-+.|.||.|+||||+++.|+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999999999987
No 435
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.34 Score=37.22 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=43.9
Q ss_pred hcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 383 VEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 383 ~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
..|+.++++++..|+++. .+++..+..-+..+|...|+.+|+.+||.-++.
T Consensus 28 ~~g~~vs~~~i~aL~e~~----~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 28 SEDIKYTPRFINSLLELA----YLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp SSCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred hcCceeCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 446899999999999998 667888888888889889999999999986654
No 436
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.26 E-value=0.074 Score=46.71 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++.+.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999885
No 437
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=92.24 E-value=0.46 Score=34.68 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=45.7
Q ss_pred HHHHHhcCC-ccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHH
Q 012719 378 AIRAQVEEI-VLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKA 437 (458)
Q Consensus 378 ~~~~~~~~~-~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~ 437 (458)
+..++..|+ .+++++...|++-. +. ++..+++-|...+...++.++|.+||..|+.
T Consensus 13 ~~iaes~Gi~~lsddaa~~LA~dv-Ey---r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 13 KVIAESIGVGSLSDDAAKELAEDV-SI---KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHTTCCCBCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 344556688 69999999999887 44 4556888888888889999999999998875
No 438
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.24 E-value=0.066 Score=46.50 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 012719 68 ALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 68 ~~Ll~GppGtGKT~lA~alA~ 88 (458)
.+++.|++|+|||++...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999874
No 439
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.16 E-value=0.074 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999874
No 440
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.12 E-value=0.077 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+.|.|+||+|||+|..++..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999864
No 441
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.11 E-value=0.082 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..+.|.||+|+|||||.++|+..+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 45789999999999999999986553
No 442
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.11 E-value=0.085 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 443
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.07 E-value=0.087 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..++|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999887753
No 444
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.05 E-value=0.046 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 012719 65 AGRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
++..+.+.|++|+|||||.++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999998864
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.05 E-value=0.086 Score=46.49 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998753
No 446
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.04 E-value=0.11 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 65 AGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 65 ~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
++..+++.||+|+||||++..||..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999999883
No 447
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.03 E-value=0.089 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 012719 66 GRALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
++.++|.|++|+||||++-.||..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999877
No 448
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.03 E-value=0.089 Score=45.30 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 449
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.02 E-value=0.09 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
-.+++.|++|+|||+|...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47999999999999999988763
No 450
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.02 E-value=0.088 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+++.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999998776644
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.089 Score=46.24 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
...+++.|++|+|||+|...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999998863
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.01 E-value=0.088 Score=45.99 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|..++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999998863
No 453
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.96 E-value=0.086 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4799999999999999999874
No 454
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.96 E-value=0.15 Score=49.92 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=27.5
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHh---CCCccEEEecC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQEL---GSKVPFCPMVG 101 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l---~~~~p~i~l~~ 101 (458)
....-+++.|..|+||||+|.++|..+ |.++-++..+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 333456667999999999999999876 65555555544
No 455
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.95 E-value=0.067 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998763
No 456
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.95 E-value=0.091 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998764
No 457
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=91.95 E-value=0.56 Score=35.26 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 368 YGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 368 ~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
++.+-+.+|++...+...-.|+++++..++++- +- ++...+.+|...|...|...++.+|+++++..
T Consensus 9 ~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl-~i---FV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 9 FRKETVERLLRLHFRDGRTRVNGDALLLMAELL-KV---FVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp CCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 344444455555444456789999999999887 32 45556667766677778889999999997663
No 458
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.91 E-value=0.083 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
...+++.|++|+|||+|...+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998764
No 459
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.088 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 460
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.09 Score=57.35 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
..+++.||||||||+++..+...+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999877766544
No 461
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.87 E-value=0.096 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
No 462
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.85 E-value=0.094 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
No 463
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.85 E-value=0.095 Score=46.73 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 464
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.84 E-value=0.089 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 012719 67 RALLLAGPPGTGKTALALGICQEL 90 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l 90 (458)
-.+++.|++|+|||+|...+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 465
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.84 E-value=0.095 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998763
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.83 E-value=0.095 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999876
No 467
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.83 E-value=0.11 Score=54.56 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHhcccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecC
Q 012719 59 IRQKKMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVG 101 (458)
Q Consensus 59 ~~~~~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~ 101 (458)
+.-...++..+.+.||+|+||||+++.++..+.+.---+.+++
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 3334455678999999999999999999998754323444444
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.79 E-value=0.096 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998764
No 469
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.16 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 470
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.75 E-value=0.092 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998864
No 471
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.75 E-value=0.11 Score=51.54 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=55.5
Q ss_pred ceEEEEcccchhc----HHHHHHHHHHhhccCCC--eEEEecCCccccccCCCCCCCCCCC--------hhHhhhhcccc
Q 012719 299 PGVLFIDEVHMLD----MECFSYLNRALESSLSP--IVIFATNRGICNIRGTDMNSPHGIP--------LDLLDRLVIIR 364 (458)
Q Consensus 299 ~~Vl~IDE~~~l~----~~~~~~Ll~~lE~~~~~--i~il~tn~~~~~~~~~~~~~~~~l~--------~~l~sR~~~i~ 364 (458)
+.+++|||++.+- +...+.|.+.+.+.+.. .++++| ..+..+. ..+++.|...-
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~t------------Q~~~d~~~~~~~~~~~~il~n~~~~i 330 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVIS------------QNVIDFLAPEVQRYGQALLDNPTYKL 330 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEE------------SCGGGGGSTTTHHHHHHHHHSCSEEE
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEc------------CCHHHhhChhhHHHHHHHHHhhhhhh
Confidence 6899999999985 55666677666655443 567778 3444443 36889997765
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHh
Q 012719 365 TQIYGPAEMIQILAIRAQVEEIVLDEESLAHLGEIA 400 (458)
Q Consensus 365 ~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~ 400 (458)
+-+.+..++..+.. . +.+++...+.|....
T Consensus 331 ~l~~~~~~~~~~~~-~-----~~ls~~e~~~l~~~~ 360 (392)
T 4ag6_A 331 LLAQGEKDLEAITT-L-----MNLSEAEHDLLVNAK 360 (392)
T ss_dssp ECSCCHHHHHHHHH-H-----TTCCHHHHHHHHTCC
T ss_pred eeCCChhhHHHHHH-H-----hCCCHHHHHhccCCC
Confidence 55566666544433 2 347888888777654
No 472
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.74 E-value=0.092 Score=46.52 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 473
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.70 E-value=0.1 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 474
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.69 E-value=0.085 Score=45.92 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||++...+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999998864
No 475
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.64 E-value=0.054 Score=50.44 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=40.0
Q ss_pred eEEEeccCcccccCCccccccccccccccccccCCCcchHHHHHHHhhcC----H---hhHHHHhcCCCCh--hhHHHHH
Q 012719 193 VIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVT----L---HDLDAANARPQGG--QDILSLM 263 (458)
Q Consensus 193 ~v~i~~t~~~~~~~gr~~~~~~~~d~~~~~~v~~p~~~~~~r~~i~~~~~----l---~~l~~~~~~~~g~--adl~~l~ 263 (458)
+++| ++++....++....+..||+. .+.++.| +...|.++++... + .+++.++..+.|+ .|+..++
T Consensus 152 v~vi-~ttn~~~~ld~~l~r~~Rf~~--~i~i~~p--~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~ 226 (268)
T 2r62_A 152 VIVL-AATNRPEILDPALMRPGRFDR--QVLVDKP--DFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANII 226 (268)
T ss_dssp CEEE-ECBSCCTTSCGGGGSSSSSCC--CCBCCCC--CTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHH
T ss_pred EEEE-EecCCchhcCHhHcCCCCCCe--EEEecCc--CHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 4444 555555555555545557764 4455555 4445666665422 1 1466778888886 6887776
Q ss_pred Hhh
Q 012719 264 GQM 266 (458)
Q Consensus 264 ~~~ 266 (458)
..+
T Consensus 227 ~~a 229 (268)
T 2r62_A 227 NEA 229 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 476
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.62 E-value=0.096 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|+..+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47999999999999999999863
No 477
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.59 E-value=0.1 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|..++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5799999999999999999876
No 478
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.59 E-value=0.093 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
...+++.|++|+|||++...+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 479
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.57 E-value=0.04 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCC
Q 012719 69 LLLAGPPGTGKTALALGICQELGSK 93 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~l~~~ 93 (458)
+.+.||+|+||||+.++++..+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccccC
Confidence 3578999999999999999998643
No 480
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.54 E-value=0.11 Score=51.24 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.3
Q ss_pred cCCceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 64 MAGRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 64 ~~~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+..+++.||+|+|||++++.+++.++
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3456899999999999999999998763
No 481
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.50 E-value=0.1 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.49 E-value=0.1 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 66 GRALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
+..+.|.||+|+|||||.++|+ .+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3578899999999999999999 554
No 483
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.48 E-value=0.12 Score=47.88 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
..+++.|.+|+||||++..+|..+.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999998873
No 484
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.1 Score=46.47 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||+|+..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999998764
No 485
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.48 E-value=0.073 Score=45.98 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.4
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGIC 87 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA 87 (458)
...+++.|++|+|||+|...+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4589999999999999998765
No 486
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.45 E-value=0.12 Score=51.76 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 012719 69 LLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 69 ~Ll~GppGtGKT~lA~alA~~ 89 (458)
+.+.||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999875
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.41 E-value=0.11 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999875
No 488
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.38 E-value=0.4 Score=53.01 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+.-++++||.|+||||+.+.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999954
No 489
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.31 E-value=0.07 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=10.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 490
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.26 E-value=0.33 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
+..++++||.|+||||+.+.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 45788999999999999999874
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.24 E-value=0.12 Score=46.22 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 012719 67 RALLLAGPPGTGKTALALGICQELG 91 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~l~ 91 (458)
.-.+++||.|+|||++..+|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999998885
No 492
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.19 E-value=0.1 Score=54.80 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=29.7
Q ss_pred ccCCceEEEEcCCCChHHHHHHHHHHHhCCCccEEEecCC
Q 012719 63 KMAGRALLLAGPPGTGKTALALGICQELGSKVPFCPMVGS 102 (458)
Q Consensus 63 ~~~~~~~Ll~GppGtGKT~lA~alA~~l~~~~p~i~l~~~ 102 (458)
..++..+.+.||+|+||||+++.++..+.+.---+.+.+.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE
Confidence 3446689999999999999999999987543224444443
No 493
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=91.17 E-value=0.24 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 012719 66 GRALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 66 ~~~~Ll~GppGtGKT~lA~alA~ 88 (458)
...+++.|++|+|||++...+..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCChHHHHHHHHh
Confidence 35799999999999999988875
No 494
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.14 E-value=0.6 Score=35.27 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhcCCHHHHHHhhHHHHHHHhhhCCCCccHHHHHHHHHh
Q 012719 368 YGPAEMIQILAIRAQVEEIVLDEESLAHLGEIARDTSLRHAVQLLYPASVVAKMNGRDSICKADVEEVKAL 438 (458)
Q Consensus 368 ~~~~e~~~il~~~~~~~~~~i~~~~l~~i~~~~~~g~~r~a~~ll~~a~~~a~~~~~~~it~~~v~~~~~~ 438 (458)
++.+-+.+||+...++..-.|+++++..++++. +- ++...+.+|...|...+...++.+|++.++..
T Consensus 13 i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl-~i---FV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 13 FRKELVSRLLHLHFKDDKTKVSGDALQLMVELL-KV---FVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp CCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 345555556665555566789999999999887 32 44555666666677778889999999998764
No 495
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.14 E-value=0.12 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|++|+|||++...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 496
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.12 E-value=0.12 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..++|.|++|+|||++..+|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999999875
No 497
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.07 E-value=0.093 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGIC 87 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA 87 (458)
..+++.|++|+|||+|.+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999885
No 498
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.12 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999876
No 499
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.04 E-value=0.11 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQ 88 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~ 88 (458)
..+++.|++|+|||+|...+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999864
No 500
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.02 E-value=0.12 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 012719 67 RALLLAGPPGTGKTALALGICQE 89 (458)
Q Consensus 67 ~~~Ll~GppGtGKT~lA~alA~~ 89 (458)
..+++.|+||+|||+|...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
Done!