BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012720
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 200/347 (57%), Gaps = 12/347 (3%)
Query: 114 TWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173
T + AK ++L NK VV G G+FGTA+A ++ K ++ V+ + + + +NEK
Sbjct: 3 TKQHSAKDELL-YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEV--RLVNEKRE 59
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEG-----ISDYVDPGLP 228
N + +L N+ T+D + A GA+ L +P QF F E I+ + +P
Sbjct: 60 NVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVP 119
Query: 229 FISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288
+ +KG+E +TL+ ++II + L +P L+GPSFA+E+ + T + +AS D +
Sbjct: 120 VLVCTKGIERSTLKFPAEIIGEFLPSPL--LSVLAGPSFAIEVATGVFTCVSIASADINV 177
Query: 289 ANAVQQLLAS--KHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346
A +Q+++++ + ++D G E+A A+KNVLAI +G+ G+ +G N+ AAL+ +G
Sbjct: 178 ARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRG 237
Query: 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
EIR L +G + + GL+G GD+ LTC LSRN TVG +LG G +++I +
Sbjct: 238 LLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 297
Query: 407 VAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS 453
VAEGV+TA ++ LA++ VKMP+ + I+ + P+ A+ +L+S
Sbjct: 298 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLS 344
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 184 bits (467), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 182/327 (55%), Gaps = 11/327 (3%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
+ +LG GS+GTA+A +A K +++++ D + + N RY P PE + A
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDH--VDEMQAEGVNNRYLPNYPFPETLKA 89
Query: 190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISD---YVDPGLPFISLSKGLELNTLRMMSQ 246
D K +L G L +P S +F E I+ +D +KGL + R++ +
Sbjct: 90 YCDLKASLEGVTDILIVVP---SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHE 145
Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
++ L + P +SGPS A E+ LPTA+ +AS + + + + + L + R+ +
Sbjct: 146 VVATEL--GQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKN 203
Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366
D+ GVE+ G++KN+LAIA GI G+ LG+N+ AAL+ +G +E+ L + G K T+TG
Sbjct: 204 DDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG 263
Query: 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426
L+G GD++LTC N SRNR G+ LG G + ++ Q EG+ V ALAQK+ +
Sbjct: 264 LAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAI 323
Query: 427 KMPVLTAVARIIDNELTPKKAVLELMS 453
+MP+ V RI+ +L P++AV EL+
Sbjct: 324 EMPLTFQVHRILHEDLDPQQAVQELLE 350
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 166/310 (53%), Gaps = 15/310 (4%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
+ VLG GS+GT A + + V + R + IN H + Y E K+ V
Sbjct: 16 RFFVLGAGSWGTVFAQXLHENGEE--VILWARRKEIVDLINVSHTSP-YVEESKI--TVR 70
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
AT D + + D + A+PVQ+ L + V P ++LSKG+E+ T + +S+I+
Sbjct: 71 ATNDLEE-IKKEDILVIAIPVQYIREHLLRLP--VKPSX-VLNLSKGIEIKTGKRVSEIV 126
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ L P + LSGPS A E+ KLPTA+ +A ++ K +Q+ +++++ R+ T D
Sbjct: 127 EEILGCP---YAVLSGPSHAEEVAKKLPTAVTLAGENSK---ELQKRISTEYFRVYTCED 180
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVEIAGALKNV+AIAAGI+ G +N+ AAL +G EI GA T GL+
Sbjct: 181 VVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGXFFGADQKTFXGLA 240
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD+ +TC SRNR G + G +L S NQV EG T AV +A++ +
Sbjct: 241 GIGDLXVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVXKIAKENKIDX 300
Query: 429 PVLTAVARII 438
P+ V R++
Sbjct: 301 PISEEVYRVV 310
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 33/335 (9%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
+ KV ++G G++G+A+A V +QL + DP V + IN +H
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTMWVFEEDIGGKKLTEIINTQH 63
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
N +Y P KLP NV+A D A AD + +P QF + + ++ ISL
Sbjct: 64 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL 123
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
KG++ N L+++S++I + L P L G + A E+ ++ + KD
Sbjct: 124 IKGVDEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQ 180
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
+++L+ + + RI+ +V VEI GALKNV+A+ AG G+ G+N+ AA++ G E+
Sbjct: 181 LLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEM 240
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM-- 404
A + P AT G D++ TC+ RNR V +G+ ++ + +
Sbjct: 241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLN 298
Query: 405 NQVAEGVSTAGAVIALAQKYNV--KMPVLTAVARI 437
Q +G TA + ++ Q + K P+ AV ++
Sbjct: 299 GQKLQGPETARELYSILQHKGLVDKFPLFMAVYKV 333
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 33/335 (9%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
+ KV ++G G++G+A+A V +QL + DP V + IN +H
Sbjct: 3 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTMWVFEEDIGGKKLTEIINTQH 58
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
N +Y P KLP NV+A D A AD + +P QF + + ++ ISL
Sbjct: 59 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANPTGISL 118
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
KG++ N L+++S++I + L P L G + A E+ ++ + KD
Sbjct: 119 IKGVDEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQ 175
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
+++L+ + + RI+ +V VEI GALKNV+A+ AG G+ G+N+ AA++ G E+
Sbjct: 176 LLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEM 235
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM-- 404
A + P AT G D++ TC+ RNR V +G+ ++ + +
Sbjct: 236 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLN 293
Query: 405 NQVAEGVSTAGAVIALAQKYNV--KMPVLTAVARI 437
Q +G TA + ++ Q + K P+ AV ++
Sbjct: 294 GQKLQGPETARELYSILQHKGLVDKFPLFMAVYKV 328
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 33/335 (9%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
+ KV ++G G++G+A+A V +QL + DP V + IN +H
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTXWVFEEDIGGKKLTEIINTQH 63
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
N +Y P KLP NV+A D A AD + +P QF + + ++ ISL
Sbjct: 64 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL 123
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
KG++ N L+++S++I + L P L G + A E+ ++ + KD
Sbjct: 124 IKGVDEGPNGLKLISEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQ 180
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
+++L + + RI+ +V VEI GALKNV+A+ AG G+ G+N+ AA++ G E
Sbjct: 181 LLKELXQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLXEX 240
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM-- 404
A + P AT G D++ TC+ RNR V +G+ ++ + +
Sbjct: 241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLN 298
Query: 405 NQVAEGVSTAGAVIALAQKYNV--KMPVLTAVARI 437
Q +G TA + ++ Q + K P+ AV ++
Sbjct: 299 GQKLQGPETARELYSILQHKGLVDKFPLFXAVYKV 333
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 165/348 (47%), Gaps = 29/348 (8%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLK-----VYMLMRDPAV-----CQSINEKHCNCRYF 178
KV ++G G++G+A+A + N +L+ V M + + V IN H N +Y
Sbjct: 7 KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDHENVKYL 66
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238
P KLPENV+A ++ A+ AD + +P QF + I+ V I+L KG++
Sbjct: 67 PGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDE 126
Query: 239 --NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL 296
L+++S II + + L G + A E+ + + SK + ++LL
Sbjct: 127 GPEGLKLISDIIREKMG---IDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELL 183
Query: 297 ASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA-- 354
+ + RI+ D VE+ GALKN++A+ AG G+ G+N+ AA++ G E+ A
Sbjct: 184 QTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARI 243
Query: 355 -TKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQVAEG 410
K AT G D++ TC+ RNR V +G+ ++++ M Q +G
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTGKTIEELEKEMLNGQKLQG 301
Query: 411 VSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456
T+ V + ++ + K P+ TAV +I + V E++S Q
Sbjct: 302 PQTSAEVYRILKQKGLLDKFPLFTAVYQI----CYESRPVQEMLSCLQ 345
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 167/349 (47%), Gaps = 41/349 (11%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR----------YFP 179
V +LG G+ G+A++ + + ++++++ D + +SI+ + R ++P
Sbjct: 3 VSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP 62
Query: 180 EQ--KLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD-YVDPGLPFISLSKGL 236
EQ K EN A+ LLG +PV S L + D Y+ + +SKGL
Sbjct: 63 EQLEKCLEN------AEVVLLGVS-TDGVLPVM--SRILPYLKDQYI------VLISKGL 107
Query: 237 --ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
N++ + + + + + R+ +A++GP+ A E+ ++PT +V +S AN +++
Sbjct: 108 IDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKE 167
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSE 349
+ +++ + ++D+ G EI ALKNV +IA + G +N+ + + +E
Sbjct: 168 IFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINE 227
Query: 350 IRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ--- 406
+ L +G T GLSG GD++ T RN +G LG G +D+ + + +
Sbjct: 228 MAELIEILGGDRETAFGLSGFGDLIATF--RGGRNGMLGELLGKGLSIDEAMEELERRGV 285
Query: 407 -VAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454
V EG TA L+ K N +L ++ R++ L ++ + EL +
Sbjct: 286 GVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYEGLKVEEVLFELATF 334
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 129 KVVVLGGGSFGTAMAAHVA-NKKSQL----KVYMLMRDPAV-----CQSINEKHCNCRYF 178
K+ +LG G++ +A++ V N K+ +V M +RD V IN KH N +Y
Sbjct: 23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDY----VDPGLPFISLSK 234
LP N++A +D + + AD + +P Q+ S L I + + ISL+K
Sbjct: 83 KGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTK 142
Query: 235 GL--ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292
G + N +++ S I L P ALSG + A+++ + + + D+
Sbjct: 143 GFIVKKNQMKLCSNYISDFLNIPCS---ALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199
Query: 293 QQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
Q++ + +I+ ++ VEI GALKN++ +A G G+NL NS +A++ G +E+
Sbjct: 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 125 ERTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-----MLMRDPAV-----CQSINEKHC 173
E+ KV V+G G++GT +A VA N K +V+ M + + + + IN +H
Sbjct: 32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQ 91
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233
N +Y P LP+N++A D ++ D + +P QF + +VD + IS
Sbjct: 92 NVKYLPGITLPDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCL 151
Query: 234 KGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK------- 284
KG E+ ++++S I + L ALSG + A E+ + + VA
Sbjct: 152 KGFEVGAKGVQLLSSYITEELGIQCG---ALSGANIATEVAQEHWSETTVAYHIPKDFRG 208
Query: 285 -----DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM 339
D K+ A L + +S DV G+ I GALKNV+A+ G V G+ GNN+
Sbjct: 209 EGKDVDHKVLKA---LFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNAS 265
Query: 340 AALVAQGCSEI 350
AA+ G EI
Sbjct: 266 AAIQRVGLGEI 276
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 238 LNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK----LPTAMV 280
++ +RM Q I + L+NP ++ +SG F +E+ N +PT V
Sbjct: 507 IDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWV 553
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 163 AVCQSINEKHC----NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEG 218
A +NE N R++P ++ + +A A+ A L + A +S+ EG
Sbjct: 101 AAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHAST--EG 158
Query: 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG 264
I+ Y+ P + + K LE ++ +AL NP +PF A+ G
Sbjct: 159 IAHYL-PAVAGFLMEKELE---------VLGKALSNPDRPFTAIIG 194
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYML----------MRDPAVCQSINEKHCNCRYF 178
+V++GGGS G+ +AA ++ +V ++ + +PA ++ + + Y
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDS-RVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAM 207
E + A A+ L+G CLHAM
Sbjct: 78 TEAQAGTAGRAHHWARGRLIGGSSCLHAM 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,836,599
Number of Sequences: 62578
Number of extensions: 377255
Number of successful extensions: 1200
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 17
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)