Query 012720
Match_columns 458
No_of_seqs 300 out of 2316
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 3.3E-58 7.1E-63 452.4 35.5 325 127-455 1-325 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 1.7E-52 3.7E-57 425.0 35.8 327 125-456 9-358 (365)
3 PRK12439 NAD(P)H-dependent gly 100.0 3.1E-51 6.8E-56 415.6 37.8 326 126-456 6-332 (341)
4 TIGR03376 glycerol3P_DH glycer 100.0 3E-51 6.5E-56 413.3 34.2 318 129-451 1-342 (342)
5 PRK14620 NAD(P)H-dependent gly 100.0 6E-46 1.3E-50 375.0 36.2 322 128-453 1-326 (326)
6 PRK00094 gpsA NAD(P)H-dependen 100.0 1.2E-43 2.5E-48 357.3 36.5 325 127-454 1-325 (325)
7 PRK14618 NAD(P)H-dependent gly 100.0 1.2E-43 2.5E-48 358.7 36.0 321 126-456 3-325 (328)
8 PRK14619 NAD(P)H-dependent gly 100.0 2.2E-42 4.8E-47 346.4 33.4 298 127-455 4-302 (308)
9 KOG2711 Glycerol-3-phosphate d 100.0 3.7E-41 8E-46 327.5 30.7 326 126-456 20-369 (372)
10 COG2084 MmsB 3-hydroxyisobutyr 100.0 2.8E-30 6.1E-35 252.5 21.7 256 128-439 1-266 (286)
11 PRK06249 2-dehydropantoate 2-r 100.0 4.2E-28 9.1E-33 243.7 24.0 287 127-442 5-309 (313)
12 PRK06522 2-dehydropantoate 2-r 100.0 1.1E-27 2.4E-32 238.8 23.9 285 128-442 1-298 (304)
13 COG1893 ApbA Ketopantoate redu 100.0 7.2E-28 1.5E-32 240.6 20.9 288 128-442 1-300 (307)
14 PRK12921 2-dehydropantoate 2-r 100.0 3.5E-27 7.6E-32 235.5 24.6 286 128-442 1-301 (305)
15 PRK08229 2-dehydropantoate 2-r 100.0 1.6E-26 3.6E-31 234.5 25.5 288 127-441 2-316 (341)
16 KOG0409 Predicted dehydrogenas 100.0 6.2E-27 1.4E-31 225.3 20.1 274 127-456 35-325 (327)
17 PRK05708 2-dehydropantoate 2-r 99.9 9E-27 1.9E-31 233.2 20.5 283 127-441 2-296 (305)
18 PRK15461 NADH-dependent gamma- 99.9 1.5E-25 3.2E-30 223.5 22.4 272 128-452 2-287 (296)
19 PRK15059 tartronate semialdehy 99.9 4E-25 8.8E-30 219.8 22.0 271 128-453 1-285 (292)
20 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 2.9E-25 6.2E-30 201.4 16.0 156 129-288 1-156 (157)
21 TIGR00745 apbA_panE 2-dehydrop 99.9 2.2E-24 4.7E-29 213.8 21.7 277 137-442 1-291 (293)
22 TIGR01692 HIBADH 3-hydroxyisob 99.9 2.3E-24 5.1E-29 214.1 21.3 269 132-450 1-286 (288)
23 PRK11559 garR tartronate semia 99.9 1E-23 2.3E-28 210.0 22.6 275 127-454 2-289 (296)
24 TIGR03026 NDP-sugDHase nucleot 99.9 4.9E-23 1.1E-27 214.5 25.6 282 128-453 1-306 (411)
25 TIGR01505 tartro_sem_red 2-hyd 99.9 3.2E-23 6.9E-28 206.2 21.5 271 129-453 1-285 (291)
26 PRK12490 6-phosphogluconate de 99.9 9.7E-23 2.1E-27 203.6 23.0 258 128-438 1-271 (299)
27 PF07479 NAD_Gly3P_dh_C: NAD-d 99.9 1E-23 2.2E-28 188.7 11.9 145 307-451 1-149 (149)
28 PLN02350 phosphogluconate dehy 99.9 7.7E-23 1.7E-27 215.1 20.5 263 127-441 6-297 (493)
29 PLN02858 fructose-bisphosphate 99.9 7.6E-23 1.7E-27 237.6 22.1 274 126-451 3-291 (1378)
30 PRK09599 6-phosphogluconate de 99.9 1.4E-21 3E-26 195.4 23.3 275 128-452 1-289 (301)
31 PLN02858 fructose-bisphosphate 99.9 1.2E-21 2.7E-26 227.6 23.2 274 127-452 324-612 (1378)
32 TIGR00872 gnd_rel 6-phosphoglu 99.9 1.1E-19 2.5E-24 181.4 24.3 273 128-453 1-288 (298)
33 COG1004 Ugd Predicted UDP-gluc 99.8 2.2E-19 4.9E-24 179.9 24.3 276 128-454 1-305 (414)
34 PTZ00142 6-phosphogluconate de 99.8 1E-19 2.2E-24 191.2 22.2 206 127-367 1-217 (470)
35 PRK11064 wecC UDP-N-acetyl-D-m 99.8 3.9E-19 8.4E-24 185.1 22.2 274 126-452 2-304 (415)
36 PF03446 NAD_binding_2: NAD bi 99.8 6.8E-20 1.5E-24 167.1 13.6 155 127-304 1-158 (163)
37 PRK15182 Vi polysaccharide bio 99.8 3.9E-19 8.6E-24 185.3 20.3 278 127-453 6-303 (425)
38 PRK15057 UDP-glucose 6-dehydro 99.8 5.4E-18 1.2E-22 174.8 23.9 269 128-453 1-293 (388)
39 PLN02353 probable UDP-glucose 99.8 1.4E-17 3E-22 175.3 25.5 283 127-453 1-316 (473)
40 TIGR00873 gnd 6-phosphoglucona 99.8 3.5E-18 7.7E-23 179.7 20.1 203 129-367 1-214 (467)
41 PLN02688 pyrroline-5-carboxyla 99.8 1.4E-16 3.1E-21 156.3 23.6 252 128-440 1-259 (266)
42 COG0677 WecC UDP-N-acetyl-D-ma 99.7 3.9E-16 8.5E-21 156.1 20.9 216 127-366 9-248 (436)
43 PRK07634 pyrroline-5-carboxyla 99.7 1.8E-15 3.9E-20 146.5 21.4 201 124-366 1-204 (245)
44 PRK09287 6-phosphogluconate de 99.7 6.2E-16 1.3E-20 162.2 17.0 193 138-367 1-206 (459)
45 PRK07679 pyrroline-5-carboxyla 99.7 4.4E-15 9.6E-20 147.0 22.1 199 126-367 2-205 (279)
46 PRK12491 pyrroline-5-carboxyla 99.7 9E-15 1.9E-19 144.2 23.2 197 127-366 2-202 (272)
47 PRK07680 late competence prote 99.6 3.1E-14 6.8E-19 140.4 23.4 158 128-309 1-161 (273)
48 PRK12557 H(2)-dependent methyl 99.6 3.7E-15 7.9E-20 151.1 16.4 200 128-366 1-234 (342)
49 PRK06129 3-hydroxyacyl-CoA deh 99.6 6E-14 1.3E-18 140.8 24.2 255 127-437 2-275 (308)
50 COG0345 ProC Pyrroline-5-carbo 99.6 6.1E-14 1.3E-18 136.5 19.8 196 127-366 1-199 (266)
51 PRK07531 bifunctional 3-hydrox 99.6 4.7E-14 1E-18 150.3 20.4 201 127-367 4-216 (495)
52 PRK11880 pyrroline-5-carboxyla 99.6 1.6E-13 3.4E-18 134.8 21.8 155 127-306 2-158 (267)
53 PRK06130 3-hydroxybutyryl-CoA 99.6 1.4E-13 2.9E-18 138.3 19.1 202 124-366 1-214 (311)
54 PRK06928 pyrroline-5-carboxyla 99.6 4.1E-13 8.8E-18 132.8 21.8 158 127-307 1-162 (277)
55 TIGR01915 npdG NADPH-dependent 99.5 2.5E-13 5.5E-18 129.7 17.7 175 128-310 1-191 (219)
56 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 9.7E-14 2.1E-18 129.2 14.4 163 128-295 1-185 (185)
57 PRK08507 prephenate dehydrogen 99.5 6.3E-13 1.4E-17 131.3 19.1 173 128-320 1-180 (275)
58 PRK07417 arogenate dehydrogena 99.5 3.5E-13 7.6E-18 133.4 17.2 172 128-320 1-179 (279)
59 PRK06476 pyrroline-5-carboxyla 99.5 2.1E-12 4.6E-17 126.3 21.6 190 128-366 1-191 (258)
60 PRK09260 3-hydroxybutyryl-CoA 99.5 5.7E-13 1.2E-17 132.5 15.9 166 128-310 2-184 (288)
61 PTZ00431 pyrroline carboxylate 99.5 3.7E-12 8.1E-17 124.9 21.2 190 127-366 3-195 (260)
62 COG1023 Gnd Predicted 6-phosph 99.5 7.9E-12 1.7E-16 117.4 19.7 195 128-360 1-199 (300)
63 PF03807 F420_oxidored: NADP o 99.5 3.4E-13 7.4E-18 111.6 9.3 93 129-235 1-96 (96)
64 PRK08655 prephenate dehydrogen 99.4 3.9E-12 8.3E-17 133.5 19.3 163 128-312 1-167 (437)
65 PF02558 ApbA: Ketopantoate re 99.4 2.8E-13 6.1E-18 121.3 9.1 115 130-253 1-115 (151)
66 COG2085 Predicted dinucleotide 99.4 2.9E-12 6.2E-17 119.5 14.5 164 127-309 1-181 (211)
67 PRK08293 3-hydroxybutyryl-CoA 99.4 4.8E-12 1E-16 125.8 17.3 198 127-364 3-217 (287)
68 PRK07530 3-hydroxybutyryl-CoA 99.4 1E-11 2.2E-16 123.8 18.5 171 124-310 1-186 (292)
69 PRK11199 tyrA bifunctional cho 99.4 9.5E-12 2E-16 128.2 17.7 182 96-316 66-250 (374)
70 PRK06035 3-hydroxyacyl-CoA deh 99.4 1.6E-12 3.4E-17 129.5 11.2 170 127-311 3-189 (291)
71 PRK07502 cyclohexadienyl dehyd 99.4 1.3E-11 2.9E-16 123.8 18.0 162 127-308 6-179 (307)
72 PRK05808 3-hydroxybutyryl-CoA 99.4 2.7E-11 5.9E-16 120.0 19.2 197 127-364 3-214 (282)
73 PLN02545 3-hydroxybutyryl-CoA 99.4 5.6E-11 1.2E-15 118.6 20.9 170 124-310 1-186 (295)
74 PLN02256 arogenate dehydrogena 99.4 3.9E-11 8.5E-16 120.1 19.4 211 124-364 33-258 (304)
75 PRK06545 prephenate dehydrogen 99.4 8.5E-12 1.8E-16 127.9 14.5 164 128-308 1-174 (359)
76 PRK05479 ketol-acid reductoiso 99.3 3E-11 6.5E-16 121.4 17.1 149 127-302 17-175 (330)
77 PRK08268 3-hydroxy-acyl-CoA de 99.3 6.6E-11 1.4E-15 126.4 20.6 196 127-366 7-220 (507)
78 TIGR00465 ilvC ketol-acid redu 99.3 1.6E-10 3.5E-15 116.0 22.1 149 127-302 3-161 (314)
79 PRK07066 3-hydroxybutyryl-CoA 99.3 4.3E-11 9.3E-16 120.4 17.8 198 127-364 7-216 (321)
80 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.3 4.5E-11 9.8E-16 127.3 18.9 196 127-366 5-218 (503)
81 COG0362 Gnd 6-phosphogluconate 99.3 7.7E-11 1.7E-15 117.9 16.9 209 127-366 3-217 (473)
82 COG0287 TyrA Prephenate dehydr 99.3 1.3E-10 2.7E-15 114.8 17.3 172 127-315 3-178 (279)
83 TIGR01724 hmd_rel H2-forming N 99.3 3.8E-10 8.2E-15 111.5 20.4 208 128-360 1-254 (341)
84 PRK07819 3-hydroxybutyryl-CoA 99.3 5.4E-11 1.2E-15 118.2 14.1 197 127-364 5-218 (286)
85 PF10727 Rossmann-like: Rossma 99.2 3.4E-11 7.3E-16 105.0 7.3 96 127-237 10-108 (127)
86 PRK14806 bifunctional cyclohex 99.2 3.7E-10 8.1E-15 126.2 17.4 164 127-307 3-176 (735)
87 PF02737 3HCDH_N: 3-hydroxyacy 99.2 3E-10 6.5E-15 105.3 13.8 165 129-308 1-179 (180)
88 PLN02712 arogenate dehydrogena 99.1 2.9E-09 6.3E-14 117.1 21.1 165 127-315 52-227 (667)
89 PLN02712 arogenate dehydrogena 99.1 1.7E-09 3.7E-14 118.8 17.4 165 127-313 369-542 (667)
90 PRK02318 mannitol-1-phosphate 99.1 1.6E-09 3.4E-14 112.1 13.3 224 128-364 1-269 (381)
91 PRK08818 prephenate dehydrogen 99.0 6.2E-09 1.3E-13 106.6 16.1 158 127-318 4-165 (370)
92 PRK12480 D-lactate dehydrogena 99.0 2.4E-09 5.2E-14 108.5 12.9 121 91-240 119-241 (330)
93 TIGR00112 proC pyrroline-5-car 99.0 4.6E-08 1E-12 95.1 19.6 173 152-366 9-182 (245)
94 KOG2666 UDP-glucose/GDP-mannos 99.0 1.5E-08 3.4E-13 98.8 15.6 189 127-321 1-221 (481)
95 PRK11730 fadB multifunctional 99.0 1.2E-08 2.6E-13 113.4 17.1 170 127-311 313-496 (715)
96 TIGR02440 FadJ fatty oxidation 99.0 1.6E-08 3.4E-13 112.2 16.7 169 127-311 304-488 (699)
97 COG1250 FadB 3-hydroxyacyl-CoA 99.0 1.1E-08 2.3E-13 101.8 13.9 169 127-310 3-185 (307)
98 TIGR02437 FadB fatty oxidation 98.9 2.2E-08 4.8E-13 111.1 17.3 170 127-311 313-496 (714)
99 PRK11154 fadJ multifunctional 98.9 1.6E-08 3.5E-13 112.4 15.8 170 127-311 309-493 (708)
100 PLN03139 formate dehydrogenase 98.9 5.1E-09 1.1E-13 107.8 10.9 126 91-240 171-298 (386)
101 PF08546 ApbA_C: Ketopantoate 98.9 7.1E-09 1.5E-13 90.1 10.1 117 308-440 1-123 (125)
102 PRK07574 formate dehydrogenase 98.9 9.6E-09 2.1E-13 105.8 12.6 126 91-240 164-291 (385)
103 PRK13243 glyoxylate reductase; 98.9 6.1E-09 1.3E-13 105.7 10.8 127 91-240 117-247 (333)
104 KOG2653 6-phosphogluconate deh 98.9 4.2E-08 9.2E-13 97.1 15.7 209 128-366 7-221 (487)
105 COG0111 SerA Phosphoglycerate 98.9 5.9E-09 1.3E-13 105.1 10.0 124 90-240 115-240 (324)
106 COG1052 LdhA Lactate dehydroge 98.9 5.5E-09 1.2E-13 105.3 9.4 148 68-240 90-243 (324)
107 TIGR02441 fa_ox_alpha_mit fatt 98.9 2.2E-08 4.7E-13 111.5 14.9 169 127-311 335-518 (737)
108 PRK08605 D-lactate dehydrogena 98.8 9.4E-09 2E-13 104.3 9.1 123 91-240 119-243 (332)
109 PF07991 IlvN: Acetohydroxy ac 98.8 1.3E-08 2.7E-13 91.6 8.8 93 127-237 4-98 (165)
110 PF02826 2-Hacid_dh_C: D-isome 98.8 1.8E-08 3.9E-13 93.2 10.1 101 120-239 31-133 (178)
111 PRK13403 ketol-acid reductoiso 98.8 2.2E-08 4.8E-13 99.8 10.9 94 127-238 16-110 (335)
112 PRK08269 3-hydroxybutyryl-CoA 98.8 5.7E-08 1.2E-12 97.8 12.2 186 138-366 1-213 (314)
113 PF02153 PDH: Prephenate dehyd 98.7 2.1E-07 4.6E-12 91.2 14.8 156 142-315 1-165 (258)
114 PRK15469 ghrA bifunctional gly 98.7 4.7E-08 1E-12 98.4 10.1 96 127-240 136-233 (312)
115 TIGR01327 PGDH D-3-phosphoglyc 98.7 3.7E-08 8.1E-13 105.9 9.8 123 91-240 112-236 (525)
116 PRK06436 glycerate dehydrogena 98.7 3.9E-08 8.5E-13 98.4 8.9 117 91-240 98-216 (303)
117 PRK13581 D-3-phosphoglycerate 98.7 5.7E-08 1.2E-12 104.5 10.0 122 91-240 114-237 (526)
118 KOG2380 Prephenate dehydrogena 98.7 1.9E-07 4E-12 92.2 11.8 161 123-305 48-217 (480)
119 PRK15409 bifunctional glyoxyla 98.6 1.8E-07 3.9E-12 94.6 10.4 126 91-240 116-243 (323)
120 PLN02306 hydroxypyruvate reduc 98.6 2.1E-07 4.5E-12 96.2 10.6 140 91-240 136-279 (386)
121 KOG3124 Pyrroline-5-carboxylat 98.6 1E-06 2.2E-11 84.4 13.9 159 128-310 1-163 (267)
122 KOG0069 Glyoxylate/hydroxypyru 98.6 2E-07 4.4E-12 93.5 9.5 135 89-249 132-268 (336)
123 PRK11790 D-3-phosphoglycerate 98.6 3.7E-07 8.1E-12 95.2 11.6 120 91-240 125-246 (409)
124 PLN02928 oxidoreductase family 98.5 2.7E-07 5.9E-12 94.2 9.6 109 127-240 159-269 (347)
125 PRK06444 prephenate dehydrogen 98.5 9.3E-07 2E-11 83.0 12.4 167 128-365 1-173 (197)
126 PRK06932 glycerate dehydrogena 98.5 2.4E-07 5.2E-12 93.4 8.1 124 91-240 115-240 (314)
127 PRK08410 2-hydroxyacid dehydro 98.5 1.8E-07 3.9E-12 94.1 7.2 125 91-240 113-239 (311)
128 PRK06487 glycerate dehydrogena 98.5 2.4E-07 5.3E-12 93.4 7.7 123 91-240 116-240 (317)
129 cd01065 NAD_bind_Shikimate_DH 98.5 6.8E-07 1.5E-11 80.1 9.1 96 127-233 19-116 (155)
130 PRK13304 L-aspartate dehydroge 98.5 1.4E-06 3E-11 85.8 11.7 93 127-235 1-94 (265)
131 PRK00257 erythronate-4-phospha 98.4 7.5E-07 1.6E-11 91.8 8.9 93 127-240 116-214 (381)
132 PRK13302 putative L-aspartate 98.4 1.6E-06 3.4E-11 85.7 10.5 92 127-233 6-98 (271)
133 PRK15438 erythronate-4-phospha 98.4 9.6E-07 2.1E-11 90.8 9.1 93 127-240 116-214 (378)
134 PRK06223 malate dehydrogenase; 98.4 1.8E-06 3.9E-11 86.6 10.7 105 127-236 2-122 (307)
135 TIGR02853 spore_dpaA dipicolin 98.4 1.6E-06 3.4E-11 86.4 9.4 91 127-234 151-241 (287)
136 cd05297 GH4_alpha_glucosidase_ 98.3 1.4E-06 2.9E-11 91.5 8.8 79 128-210 1-85 (423)
137 COG4007 Predicted dehydrogenas 98.3 3.6E-05 7.9E-10 73.7 16.8 160 127-307 1-194 (340)
138 TIGR01763 MalateDH_bact malate 98.3 4.4E-06 9.5E-11 83.9 11.1 103 128-236 2-121 (305)
139 PRK06141 ornithine cyclodeamin 98.2 4E-06 8.7E-11 84.5 8.7 93 127-233 125-218 (314)
140 PRK14194 bifunctional 5,10-met 98.2 2.9E-06 6.2E-11 84.3 7.4 71 127-233 159-231 (301)
141 PF14833 NAD_binding_11: NAD-b 98.2 8E-07 1.7E-11 77.0 2.8 96 328-440 2-104 (122)
142 PRK08306 dipicolinate synthase 98.2 1E-05 2.2E-10 80.9 10.8 91 127-234 152-242 (296)
143 PF00056 Ldh_1_N: lactate/mala 98.2 1.1E-05 2.4E-10 71.8 9.6 116 128-253 1-133 (141)
144 PF01408 GFO_IDH_MocA: Oxidore 98.2 2.9E-05 6.3E-10 66.3 11.9 106 128-250 1-111 (120)
145 cd05213 NAD_bind_Glutamyl_tRNA 98.2 1.4E-05 3.1E-10 80.4 11.3 96 127-234 178-274 (311)
146 COG0059 IlvC Ketol-acid reduct 98.2 8.7E-06 1.9E-10 79.8 9.1 94 127-238 18-113 (338)
147 PF01113 DapB_N: Dihydrodipico 98.1 7.9E-06 1.7E-10 71.1 8.0 122 128-267 1-124 (124)
148 KOG2304 3-hydroxyacyl-CoA dehy 98.1 6.3E-06 1.4E-10 77.5 7.4 170 124-310 8-199 (298)
149 PTZ00117 malate dehydrogenase; 98.1 1.7E-05 3.8E-10 80.1 10.9 105 127-236 5-125 (319)
150 PTZ00082 L-lactate dehydrogena 98.1 1.5E-05 3.3E-10 80.6 10.3 106 124-236 3-131 (321)
151 PRK05225 ketol-acid reductoiso 98.0 1E-05 2.2E-10 83.9 7.4 94 127-238 36-135 (487)
152 COG1748 LYS9 Saccharopine dehy 98.0 1.9E-05 4E-10 81.2 9.0 86 127-218 1-87 (389)
153 PRK14188 bifunctional 5,10-met 98.0 1.1E-05 2.5E-10 80.1 7.3 70 127-233 158-230 (296)
154 PF01488 Shikimate_DH: Shikima 98.0 1.7E-05 3.6E-10 70.1 7.5 95 127-233 12-109 (135)
155 PF00670 AdoHcyase_NAD: S-aden 98.0 3.3E-05 7.1E-10 69.9 9.1 105 114-238 9-114 (162)
156 cd05293 LDH_1 A subgroup of L- 98.0 5.4E-05 1.2E-09 76.3 11.5 105 127-236 3-123 (312)
157 TIGR02371 ala_DH_arch alanine 97.9 4.1E-05 9E-10 77.6 9.8 95 127-233 128-222 (325)
158 cd00650 LDH_MDH_like NAD-depen 97.9 2.6E-05 5.6E-10 76.6 8.0 102 130-235 1-121 (263)
159 cd01339 LDH-like_MDH L-lactate 97.9 4E-05 8.6E-10 76.8 9.1 102 130-236 1-118 (300)
160 cd05291 HicDH_like L-2-hydroxy 97.9 7.1E-05 1.5E-09 75.2 10.8 103 128-236 1-120 (306)
161 cd05292 LDH_2 A subgroup of L- 97.9 8.3E-05 1.8E-09 74.8 11.0 99 128-234 1-117 (308)
162 KOG0068 D-3-phosphoglycerate d 97.9 3E-05 6.5E-10 76.9 7.2 123 90-240 119-243 (406)
163 PRK00048 dihydrodipicolinate r 97.9 8.1E-05 1.8E-09 73.0 9.9 96 127-240 1-98 (257)
164 PRK05476 S-adenosyl-L-homocyst 97.9 0.00014 3E-09 76.0 12.1 90 124-233 209-299 (425)
165 PRK15076 alpha-galactosidase; 97.9 6.2E-05 1.4E-09 79.1 9.6 81 127-209 1-85 (431)
166 KOG2305 3-hydroxyacyl-CoA dehy 97.8 0.00027 6E-09 66.7 12.6 263 127-433 3-291 (313)
167 PTZ00075 Adenosylhomocysteinas 97.8 5.3E-05 1.2E-09 79.6 8.8 90 126-235 253-343 (476)
168 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 0.00015 3.3E-09 68.4 10.9 90 127-237 28-119 (200)
169 PLN00203 glutamyl-tRNA reducta 97.8 9.7E-05 2.1E-09 79.2 10.3 99 127-234 266-370 (519)
170 COG0569 TrkA K+ transport syst 97.8 9.5E-05 2.1E-09 71.1 9.3 96 128-234 1-102 (225)
171 smart00859 Semialdhyde_dh Semi 97.8 9.3E-05 2E-09 63.8 8.0 100 129-237 1-103 (122)
172 TIGR00936 ahcY adenosylhomocys 97.8 0.00016 3.5E-09 75.1 10.9 91 125-235 193-284 (406)
173 COG1712 Predicted dinucleotide 97.8 0.00029 6.2E-09 66.6 11.2 94 128-237 1-95 (255)
174 PRK08618 ornithine cyclodeamin 97.7 0.00012 2.7E-09 74.1 9.6 94 127-233 127-221 (325)
175 TIGR00036 dapB dihydrodipicoli 97.7 0.0003 6.6E-09 69.3 12.0 125 127-269 1-129 (266)
176 PLN00112 malate dehydrogenase 97.7 0.00033 7.2E-09 73.5 12.7 106 127-236 100-229 (444)
177 PRK13303 L-aspartate dehydroge 97.7 0.00023 4.9E-09 70.1 10.8 93 127-235 1-94 (265)
178 PRK07340 ornithine cyclodeamin 97.7 0.0002 4.4E-09 71.9 10.6 92 127-233 125-217 (304)
179 cd00300 LDH_like L-lactate deh 97.7 0.00021 4.6E-09 71.6 10.5 101 130-235 1-117 (300)
180 TIGR00507 aroE shikimate 5-deh 97.7 0.00025 5.4E-09 69.9 10.6 100 127-240 117-220 (270)
181 PRK00045 hemA glutamyl-tRNA re 97.7 0.00011 2.4E-09 77.1 8.5 95 127-234 182-281 (423)
182 COG2423 Predicted ornithine cy 97.7 0.00018 3.9E-09 72.7 9.5 96 127-233 130-225 (330)
183 PRK00066 ldh L-lactate dehydro 97.7 0.00032 6.9E-09 70.9 11.1 102 127-235 6-124 (315)
184 PRK14179 bifunctional 5,10-met 97.7 8.7E-05 1.9E-09 73.4 6.8 71 127-233 158-230 (284)
185 PRK06823 ornithine cyclodeamin 97.7 0.00029 6.2E-09 71.1 10.6 95 127-233 128-222 (315)
186 PRK06407 ornithine cyclodeamin 97.7 0.00029 6.4E-09 70.6 10.4 96 127-233 117-212 (301)
187 PRK07589 ornithine cyclodeamin 97.7 0.00023 4.9E-09 72.7 9.7 97 127-233 129-225 (346)
188 PF10100 DUF2338: Uncharacteri 97.6 0.0048 1E-07 63.2 18.9 234 127-365 1-277 (429)
189 TIGR01035 hemA glutamyl-tRNA r 97.6 0.00031 6.8E-09 73.6 10.7 96 127-234 180-278 (417)
190 PLN02494 adenosylhomocysteinas 97.6 0.00027 5.9E-09 74.3 10.0 93 123-234 250-342 (477)
191 cd05294 LDH-like_MDH_nadp A la 97.6 0.00028 6.1E-09 71.0 9.7 107 128-237 1-125 (309)
192 TIGR02992 ectoine_eutC ectoine 97.6 0.00028 6.1E-09 71.6 9.6 94 127-232 129-223 (326)
193 PF02423 OCD_Mu_crystall: Orni 97.6 0.00016 3.4E-09 73.0 7.7 97 127-233 128-224 (313)
194 PLN02602 lactate dehydrogenase 97.6 0.00044 9.5E-09 70.7 10.9 104 128-236 38-157 (350)
195 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00046 1E-08 71.9 10.8 89 126-234 201-290 (413)
196 COG0373 HemA Glutamyl-tRNA red 97.6 0.00038 8.3E-09 72.1 10.1 95 127-234 178-275 (414)
197 PRK05442 malate dehydrogenase; 97.6 0.00024 5.3E-09 71.9 8.5 110 124-237 1-134 (326)
198 PF01118 Semialdhyde_dh: Semia 97.6 0.00018 3.9E-09 62.1 6.6 97 129-236 1-100 (121)
199 TIGR02354 thiF_fam2 thiamine b 97.6 0.00019 4.2E-09 67.7 7.2 33 127-161 21-54 (200)
200 PRK00436 argC N-acetyl-gamma-g 97.6 0.0013 2.9E-08 67.1 13.8 101 127-238 2-104 (343)
201 PRK09496 trkA potassium transp 97.5 0.00034 7.4E-09 73.8 9.6 94 128-230 1-97 (453)
202 PRK13301 putative L-aspartate 97.5 0.00093 2E-08 65.3 11.6 93 127-237 2-97 (267)
203 TIGR01921 DAP-DH diaminopimela 97.5 0.00023 4.9E-09 71.7 7.6 88 126-232 2-90 (324)
204 PRK08291 ectoine utilization p 97.5 0.00039 8.6E-09 70.6 9.3 94 127-231 132-225 (330)
205 TIGR00518 alaDH alanine dehydr 97.5 0.00029 6.3E-09 72.7 8.4 98 127-233 167-267 (370)
206 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00061 1.3E-08 68.6 10.3 101 128-237 1-121 (310)
207 PRK06046 alanine dehydrogenase 97.5 0.00037 8E-09 70.7 8.8 95 127-233 129-223 (326)
208 cd01080 NAD_bind_m-THF_DH_Cycl 97.5 0.0003 6.6E-09 64.5 7.3 73 127-234 44-117 (168)
209 PRK04148 hypothetical protein; 97.4 0.00068 1.5E-08 59.6 8.5 96 127-234 17-112 (134)
210 PRK06718 precorrin-2 dehydroge 97.4 0.0022 4.7E-08 60.6 12.5 80 127-219 10-90 (202)
211 cd01078 NAD_bind_H4MPT_DH NADP 97.4 0.00056 1.2E-08 63.9 8.4 96 127-233 28-129 (194)
212 PRK08300 acetaldehyde dehydrog 97.4 0.0012 2.7E-08 65.8 11.1 93 124-233 1-101 (302)
213 PTZ00325 malate dehydrogenase; 97.4 0.00073 1.6E-08 68.3 9.6 102 126-238 7-130 (321)
214 PLN02819 lysine-ketoglutarate 97.4 0.0013 2.9E-08 75.4 12.6 86 124-219 566-668 (1042)
215 cd05290 LDH_3 A subgroup of L- 97.4 0.0012 2.5E-08 66.5 10.8 103 129-236 1-122 (307)
216 PRK13940 glutamyl-tRNA reducta 97.4 0.00056 1.2E-08 71.6 8.4 73 127-210 181-253 (414)
217 TIGR01850 argC N-acetyl-gamma- 97.4 0.0021 4.5E-08 65.8 12.4 99 128-236 1-102 (346)
218 PRK12549 shikimate 5-dehydroge 97.3 0.0007 1.5E-08 67.4 8.5 98 127-233 127-227 (284)
219 PRK04207 glyceraldehyde-3-phos 97.3 0.0021 4.6E-08 65.6 12.2 102 127-233 1-109 (341)
220 cd01338 MDH_choloroplast_like 97.3 0.00088 1.9E-08 67.8 9.1 106 127-236 2-131 (322)
221 COG0039 Mdh Malate/lactate deh 97.3 0.00096 2.1E-08 66.8 8.8 104 128-237 1-122 (313)
222 COG0673 MviM Predicted dehydro 97.3 0.00098 2.1E-08 67.3 9.1 97 126-238 2-102 (342)
223 PRK06719 precorrin-2 dehydroge 97.3 0.0025 5.5E-08 57.7 10.4 78 127-219 13-90 (157)
224 PRK11579 putative oxidoreducta 97.3 0.0021 4.5E-08 65.6 11.0 95 124-238 1-99 (346)
225 PRK06199 ornithine cyclodeamin 97.2 0.0011 2.3E-08 68.7 8.8 98 127-231 155-257 (379)
226 COG0002 ArgC Acetylglutamate s 97.2 0.0034 7.3E-08 63.3 11.6 159 127-298 2-167 (349)
227 TIGR01759 MalateDH-SF1 malate 97.2 0.0026 5.6E-08 64.4 11.0 104 127-236 3-132 (323)
228 PF03435 Saccharop_dh: Sacchar 97.2 0.0013 2.8E-08 68.1 8.6 77 130-216 1-84 (386)
229 TIGR01772 MDH_euk_gproteo mala 97.2 0.0019 4.1E-08 65.1 9.4 100 129-237 1-120 (312)
230 TIGR02356 adenyl_thiF thiazole 97.2 0.0013 2.8E-08 62.1 7.7 35 127-162 21-55 (202)
231 PF02254 TrkA_N: TrkA-N domain 97.1 0.0019 4.1E-08 54.8 7.9 94 130-232 1-96 (116)
232 PRK05086 malate dehydrogenase; 97.1 0.003 6.6E-08 63.7 10.1 102 128-237 1-122 (312)
233 PF13460 NAD_binding_10: NADH( 97.1 0.0017 3.7E-08 59.3 7.6 69 130-209 1-70 (183)
234 TIGR00561 pntA NAD(P) transhyd 97.1 0.0028 6E-08 67.7 10.1 102 128-233 165-284 (511)
235 PLN00106 malate dehydrogenase 97.1 0.0028 6.2E-08 64.1 9.4 100 127-237 18-139 (323)
236 PRK00258 aroE shikimate 5-dehy 97.0 0.0028 6.1E-08 62.8 9.2 97 127-233 123-221 (278)
237 COG2910 Putative NADH-flavin r 97.0 0.002 4.3E-08 59.3 7.2 71 128-209 1-72 (211)
238 PRK14874 aspartate-semialdehyd 97.0 0.0017 3.6E-08 66.2 7.5 93 127-234 1-95 (334)
239 COG4408 Uncharacterized protei 97.0 0.032 7E-07 55.6 15.9 230 124-363 1-277 (431)
240 PLN02968 Probable N-acetyl-gam 97.0 0.0019 4.2E-08 66.8 7.9 97 127-234 38-135 (381)
241 TIGR03215 ac_ald_DH_ac acetald 97.0 0.0064 1.4E-07 60.4 11.1 89 128-233 2-95 (285)
242 cd00704 MDH Malate dehydrogena 97.0 0.0023 5E-08 64.8 8.2 105 129-237 2-130 (323)
243 cd01336 MDH_cytoplasmic_cytoso 97.0 0.003 6.6E-08 64.0 9.0 107 128-236 3-131 (325)
244 PRK09496 trkA potassium transp 97.0 0.0045 9.8E-08 65.2 10.7 124 94-230 203-328 (453)
245 PRK14175 bifunctional 5,10-met 97.0 0.0023 5E-08 63.5 7.8 72 127-233 158-230 (286)
246 cd05191 NAD_bind_amino_acid_DH 97.0 0.0039 8.4E-08 50.4 7.9 33 127-160 23-55 (86)
247 TIGR01757 Malate-DH_plant mala 96.9 0.0049 1.1E-07 63.8 10.2 106 128-237 45-174 (387)
248 PRK12475 thiamine/molybdopteri 96.9 0.0052 1.1E-07 62.6 10.1 35 127-162 24-58 (338)
249 TIGR01809 Shik-DH-AROM shikima 96.9 0.0028 6.2E-08 62.9 8.0 74 127-210 125-201 (282)
250 cd01487 E1_ThiF_like E1_ThiF_l 96.9 0.0023 5.1E-08 58.9 6.8 33 129-162 1-33 (174)
251 PRK08644 thiamine biosynthesis 96.9 0.0033 7.1E-08 59.9 7.7 36 126-162 27-62 (212)
252 PRK09310 aroDE bifunctional 3- 96.9 0.003 6.6E-08 67.4 8.3 71 127-211 332-402 (477)
253 PRK05671 aspartate-semialdehyd 96.9 0.0035 7.7E-08 63.8 8.3 95 124-234 1-98 (336)
254 PRK10669 putative cation:proto 96.8 0.0045 9.7E-08 67.4 9.3 96 128-233 418-515 (558)
255 TIGR01470 cysG_Nterm siroheme 96.8 0.02 4.3E-07 54.2 12.4 73 127-212 9-82 (205)
256 PRK03659 glutathione-regulated 96.8 0.0042 9.1E-08 68.3 8.7 97 127-233 400-498 (601)
257 TIGR01771 L-LDH-NAD L-lactate 96.8 0.0061 1.3E-07 61.1 9.2 100 132-236 1-116 (299)
258 PRK09424 pntA NAD(P) transhydr 96.7 0.0088 1.9E-07 64.1 10.4 105 127-233 165-285 (509)
259 TIGR01761 thiaz-red thiazoliny 96.7 0.017 3.7E-07 59.0 11.7 104 127-248 3-111 (343)
260 PF01262 AlaDh_PNT_C: Alanine 96.7 0.002 4.3E-08 58.9 4.4 105 127-233 20-139 (168)
261 PRK06349 homoserine dehydrogen 96.6 0.0048 1E-07 64.9 7.6 94 126-236 2-107 (426)
262 cd05311 NAD_bind_2_malic_enz N 96.6 0.0088 1.9E-07 57.5 8.7 92 127-235 25-130 (226)
263 PRK14982 acyl-ACP reductase; P 96.6 0.0068 1.5E-07 61.7 8.1 90 127-233 155-246 (340)
264 PRK14189 bifunctional 5,10-met 96.6 0.0051 1.1E-07 61.0 6.9 72 127-233 158-230 (285)
265 CHL00194 ycf39 Ycf39; Provisio 96.6 0.0048 1E-07 62.0 6.7 72 128-208 1-73 (317)
266 PRK03562 glutathione-regulated 96.5 0.007 1.5E-07 66.8 8.4 92 127-231 400-496 (621)
267 PRK14192 bifunctional 5,10-met 96.5 0.0083 1.8E-07 59.7 8.0 72 127-233 159-231 (283)
268 PRK08328 hypothetical protein; 96.5 0.011 2.3E-07 57.1 8.5 43 127-170 27-69 (231)
269 TIGR01758 MDH_euk_cyt malate d 96.5 0.0095 2E-07 60.4 8.3 105 129-237 1-129 (324)
270 PF02056 Glyco_hydro_4: Family 96.5 0.0033 7.2E-08 58.3 4.5 81 129-211 1-85 (183)
271 COG0289 DapB Dihydrodipicolina 96.5 0.028 6.1E-07 54.7 10.9 147 127-304 2-150 (266)
272 PRK06270 homoserine dehydrogen 96.4 0.018 3.9E-07 58.8 10.0 104 127-236 2-128 (341)
273 cd05212 NAD_bind_m-THF_DH_Cycl 96.4 0.013 2.7E-07 52.2 7.7 72 127-233 28-100 (140)
274 PLN02383 aspartate semialdehyd 96.4 0.01 2.2E-07 60.7 7.8 93 126-234 6-101 (344)
275 COG0686 Ald Alanine dehydrogen 96.4 0.0047 1E-07 61.2 5.0 97 128-233 169-268 (371)
276 PRK08040 putative semialdehyde 96.4 0.0091 2E-07 60.8 7.2 95 124-234 1-98 (336)
277 PF13380 CoA_binding_2: CoA bi 96.3 0.015 3.2E-07 50.0 7.5 74 128-222 1-78 (116)
278 cd00757 ThiF_MoeB_HesA_family 96.3 0.015 3.2E-07 55.9 8.3 35 127-162 21-55 (228)
279 cd05298 GH4_GlvA_pagL_like Gly 96.3 0.0075 1.6E-07 63.6 6.5 79 128-208 1-83 (437)
280 PRK00683 murD UDP-N-acetylmura 96.3 0.012 2.5E-07 61.8 7.9 37 126-164 2-38 (418)
281 PF02629 CoA_binding: CoA bind 96.2 0.0072 1.6E-07 49.9 4.8 78 127-221 3-84 (96)
282 PRK10206 putative oxidoreducta 96.2 0.018 3.9E-07 58.9 8.7 95 127-238 1-99 (344)
283 PRK07688 thiamine/molybdopteri 96.2 0.012 2.7E-07 60.0 7.4 35 127-162 24-58 (339)
284 TIGR00978 asd_EA aspartate-sem 96.2 0.024 5.3E-07 57.8 9.6 101 128-234 1-105 (341)
285 PRK08664 aspartate-semialdehyd 96.2 0.031 6.7E-07 57.3 10.0 101 127-234 3-108 (349)
286 PRK05472 redox-sensing transcr 96.1 0.0072 1.6E-07 57.5 5.0 79 127-220 84-167 (213)
287 cd05197 GH4_glycoside_hydrolas 96.1 0.011 2.5E-07 62.1 6.8 79 128-208 1-83 (425)
288 PRK14106 murD UDP-N-acetylmura 96.1 0.023 5E-07 60.0 9.2 69 127-209 5-78 (450)
289 PF02882 THF_DHG_CYH_C: Tetrah 96.1 0.015 3.2E-07 52.9 6.6 72 127-233 36-108 (160)
290 PRK10792 bifunctional 5,10-met 96.1 0.018 3.8E-07 57.2 7.6 72 127-233 159-231 (285)
291 PF13241 NAD_binding_7: Putati 96.1 0.014 3E-07 48.9 6.0 74 127-219 7-80 (103)
292 PRK12548 shikimate 5-dehydroge 96.1 0.013 2.9E-07 58.4 6.8 103 127-233 126-236 (289)
293 cd01486 Apg7 Apg7 is an E1-lik 96.1 0.012 2.6E-07 58.7 6.3 32 129-161 1-32 (307)
294 cd01483 E1_enzyme_family Super 96.1 0.02 4.4E-07 50.6 7.2 33 129-162 1-33 (143)
295 TIGR01381 E1_like_apg7 E1-like 96.1 0.012 2.6E-07 64.1 6.7 34 127-161 338-371 (664)
296 COG1064 AdhP Zn-dependent alco 96.0 0.047 1E-06 55.4 10.4 80 127-219 167-249 (339)
297 COG0300 DltE Short-chain dehyd 96.0 0.055 1.2E-06 53.2 10.5 44 126-171 5-49 (265)
298 COG0169 AroE Shikimate 5-dehyd 96.0 0.027 5.9E-07 55.9 8.2 97 127-233 126-226 (283)
299 TIGR01296 asd_B aspartate-semi 96.0 0.014 3.1E-07 59.5 6.4 88 129-234 1-93 (339)
300 COG1648 CysG Siroheme synthase 96.0 0.13 2.8E-06 48.9 12.4 79 127-218 12-91 (210)
301 PF05368 NmrA: NmrA-like famil 96.0 0.016 3.5E-07 55.3 6.4 71 130-209 1-74 (233)
302 PRK05562 precorrin-2 dehydroge 95.9 0.15 3.3E-06 48.8 12.9 81 127-220 25-106 (223)
303 PRK14191 bifunctional 5,10-met 95.9 0.02 4.3E-07 56.8 7.0 72 127-233 157-229 (285)
304 TIGR02355 moeB molybdopterin s 95.9 0.013 2.8E-07 56.9 5.6 36 127-163 24-59 (240)
305 PRK05600 thiamine biosynthesis 95.9 0.035 7.7E-07 57.3 9.2 35 127-162 41-75 (370)
306 cd05296 GH4_P_beta_glucosidase 95.9 0.018 3.9E-07 60.5 7.1 79 128-208 1-84 (419)
307 PRK11863 N-acetyl-gamma-glutam 95.9 0.017 3.7E-07 58.2 6.3 80 127-234 2-82 (313)
308 COG2344 AT-rich DNA-binding pr 95.8 0.013 2.8E-07 54.0 4.8 78 127-219 84-166 (211)
309 PF03447 NAD_binding_3: Homose 95.8 0.042 9E-07 46.8 7.6 86 134-238 1-95 (117)
310 KOG1495 Lactate dehydrogenase 95.8 0.045 9.7E-07 53.4 8.5 108 127-238 20-142 (332)
311 COG1486 CelF Alpha-galactosida 95.8 0.017 3.6E-07 60.3 6.0 81 126-208 2-86 (442)
312 cd01492 Aos1_SUMO Ubiquitin ac 95.7 0.043 9.3E-07 51.6 8.1 35 127-162 21-55 (197)
313 PRK12809 putative oxidoreducta 95.7 0.029 6.4E-07 62.1 8.0 35 126-162 309-343 (639)
314 PRK06728 aspartate-semialdehyd 95.7 0.031 6.6E-07 57.1 7.5 91 127-234 5-100 (347)
315 TIGR01851 argC_other N-acetyl- 95.7 0.055 1.2E-06 54.3 9.1 79 128-234 2-81 (310)
316 PRK08223 hypothetical protein; 95.7 0.044 9.5E-07 54.5 8.3 35 127-162 27-61 (287)
317 PRK06153 hypothetical protein; 95.7 0.028 6.1E-07 57.9 7.1 101 127-238 176-303 (393)
318 PRK12749 quinate/shikimate deh 95.6 0.073 1.6E-06 53.1 9.9 75 127-209 124-206 (288)
319 PRK08762 molybdopterin biosynt 95.6 0.032 6.9E-07 57.8 7.5 34 127-161 135-168 (376)
320 TIGR02717 AcCoA-syn-alpha acet 95.6 0.094 2E-06 55.6 11.0 92 126-238 6-101 (447)
321 PRK12409 D-amino acid dehydrog 95.6 0.016 3.5E-07 60.2 5.1 33 128-162 2-34 (410)
322 PLN00141 Tic62-NAD(P)-related 95.5 0.038 8.3E-07 53.4 7.3 40 127-168 17-57 (251)
323 PRK15116 sulfur acceptor prote 95.5 0.069 1.5E-06 52.7 8.9 35 127-162 30-64 (268)
324 PRK14178 bifunctional 5,10-met 95.5 0.038 8.3E-07 54.6 7.0 72 127-233 152-224 (279)
325 TIGR01546 GAPDH-II_archae glyc 95.5 0.082 1.8E-06 53.7 9.5 81 130-211 1-87 (333)
326 cd01485 E1-1_like Ubiquitin ac 95.5 0.064 1.4E-06 50.5 8.2 35 127-162 19-53 (198)
327 KOG0023 Alcohol dehydrogenase, 95.4 0.039 8.4E-07 55.1 6.7 94 126-232 181-278 (360)
328 PRK03369 murD UDP-N-acetylmura 95.4 0.083 1.8E-06 56.6 9.9 68 127-208 12-79 (488)
329 PRK01710 murD UDP-N-acetylmura 95.4 0.076 1.6E-06 56.4 9.6 66 127-206 14-84 (458)
330 PRK06598 aspartate-semialdehyd 95.4 0.097 2.1E-06 53.9 9.9 93 127-234 1-99 (369)
331 cd01079 NAD_bind_m-THF_DH NAD 95.4 0.033 7.1E-07 52.1 5.8 94 127-233 62-156 (197)
332 PRK11908 NAD-dependent epimera 95.4 0.037 8.1E-07 56.1 6.8 40 127-168 1-42 (347)
333 PRK05597 molybdopterin biosynt 95.4 0.053 1.1E-06 55.7 8.0 35 127-162 28-62 (355)
334 PRK06392 homoserine dehydrogen 95.4 0.016 3.4E-07 58.8 4.0 107 128-238 1-121 (326)
335 KOG2741 Dimeric dihydrodiol de 95.3 0.16 3.5E-06 51.2 11.0 85 127-221 6-94 (351)
336 PF00070 Pyr_redox: Pyridine n 95.3 0.032 7E-07 44.1 4.9 33 129-163 1-33 (80)
337 PRK14027 quinate/shikimate deh 95.3 0.084 1.8E-06 52.5 9.0 76 127-209 127-204 (283)
338 PRK14176 bifunctional 5,10-met 95.3 0.046 1E-06 54.2 7.0 72 127-233 164-236 (287)
339 PRK12769 putative oxidoreducta 95.2 0.05 1.1E-06 60.5 7.9 35 126-162 326-360 (654)
340 PF03059 NAS: Nicotianamine sy 95.2 0.06 1.3E-06 53.2 7.5 104 128-236 122-234 (276)
341 PRK05690 molybdopterin biosynt 95.2 0.04 8.7E-07 53.6 6.3 35 127-162 32-66 (245)
342 PRK01438 murD UDP-N-acetylmura 95.2 0.079 1.7E-06 56.5 8.9 34 127-162 16-49 (480)
343 COG0136 Asd Aspartate-semialde 95.2 0.11 2.4E-06 52.4 9.3 94 127-234 1-98 (334)
344 PRK00141 murD UDP-N-acetylmura 95.1 0.073 1.6E-06 56.8 8.5 38 127-166 15-52 (473)
345 PRK14190 bifunctional 5,10-met 95.1 0.057 1.2E-06 53.6 7.0 72 127-233 158-230 (284)
346 COG1063 Tdh Threonine dehydrog 95.1 0.099 2.1E-06 53.5 9.1 95 129-232 171-268 (350)
347 PRK08163 salicylate hydroxylas 95.1 0.025 5.3E-07 58.4 4.7 38 124-163 1-38 (396)
348 PRK05678 succinyl-CoA syntheta 95.1 0.22 4.8E-06 49.7 11.2 102 126-250 7-114 (291)
349 PF03720 UDPG_MGDP_dh_C: UDP-g 95.1 0.11 2.4E-06 43.7 7.7 84 138-234 18-102 (106)
350 PRK00711 D-amino acid dehydrog 95.1 0.029 6.3E-07 58.3 5.1 34 128-163 1-34 (416)
351 COG0493 GltD NADPH-dependent g 95.1 0.041 8.9E-07 58.4 6.2 35 127-163 123-157 (457)
352 PRK12550 shikimate 5-dehydroge 95.0 0.089 1.9E-06 52.0 8.2 66 128-209 123-188 (272)
353 PF00899 ThiF: ThiF family; I 95.0 0.036 7.8E-07 48.5 4.9 35 127-162 2-36 (135)
354 PRK14183 bifunctional 5,10-met 95.0 0.053 1.2E-06 53.7 6.5 72 127-233 157-229 (281)
355 PRK00676 hemA glutamyl-tRNA re 95.0 0.068 1.5E-06 54.4 7.4 36 127-163 174-209 (338)
356 TIGR01318 gltD_gamma_fam gluta 95.0 0.076 1.6E-06 56.6 8.1 35 126-162 140-174 (467)
357 PRK14173 bifunctional 5,10-met 95.0 0.057 1.2E-06 53.7 6.5 72 127-233 155-227 (287)
358 PRK06847 hypothetical protein; 94.9 0.029 6.2E-07 57.4 4.6 38 124-163 1-38 (375)
359 COG5495 Uncharacterized conser 94.8 0.8 1.7E-05 43.9 13.4 93 127-238 10-103 (289)
360 COG0499 SAM1 S-adenosylhomocys 94.8 0.068 1.5E-06 54.1 6.6 94 120-232 202-295 (420)
361 PRK06180 short chain dehydroge 94.8 0.23 4.9E-06 48.6 10.4 44 125-170 2-46 (277)
362 PRK14186 bifunctional 5,10-met 94.8 0.069 1.5E-06 53.3 6.6 72 127-233 158-230 (297)
363 PRK11861 bifunctional prephena 94.8 0.19 4.1E-06 56.1 10.8 108 203-315 1-118 (673)
364 PRK14169 bifunctional 5,10-met 94.8 0.07 1.5E-06 52.9 6.5 72 127-233 156-228 (282)
365 TIGR01019 sucCoAalpha succinyl 94.7 0.2 4.3E-06 49.9 9.8 92 126-238 5-100 (286)
366 PLN02427 UDP-apiose/xylose syn 94.7 0.055 1.2E-06 55.8 6.1 78 127-207 14-94 (386)
367 PRK14172 bifunctional 5,10-met 94.7 0.074 1.6E-06 52.6 6.6 72 127-233 158-230 (278)
368 PRK12429 3-hydroxybutyrate deh 94.7 0.21 4.6E-06 47.8 9.7 43 126-170 3-46 (258)
369 PRK07454 short chain dehydroge 94.7 0.24 5.2E-06 47.1 10.0 42 127-170 6-48 (241)
370 KOG1502 Flavonol reductase/cin 94.7 0.069 1.5E-06 53.8 6.3 78 127-208 6-87 (327)
371 PRK00421 murC UDP-N-acetylmura 94.7 0.094 2E-06 55.7 7.7 66 127-207 7-74 (461)
372 PRK05653 fabG 3-ketoacyl-(acyl 94.6 0.21 4.6E-06 47.2 9.5 41 127-169 5-46 (246)
373 PRK02472 murD UDP-N-acetylmura 94.6 0.17 3.8E-06 53.2 9.7 34 127-162 5-38 (447)
374 PRK14177 bifunctional 5,10-met 94.6 0.079 1.7E-06 52.5 6.5 72 127-233 159-231 (284)
375 PRK12814 putative NADPH-depend 94.6 0.078 1.7E-06 58.9 7.2 34 127-162 193-226 (652)
376 PRK14166 bifunctional 5,10-met 94.6 0.083 1.8E-06 52.4 6.5 72 127-233 157-229 (282)
377 KOG0399 Glutamate synthase [Am 94.5 0.1 2.3E-06 59.5 7.8 102 94-210 1759-1881(2142)
378 PRK05866 short chain dehydroge 94.5 0.27 5.8E-06 48.8 10.3 42 127-170 40-82 (293)
379 PLN02516 methylenetetrahydrofo 94.5 0.092 2E-06 52.5 6.8 72 127-233 167-239 (299)
380 PRK14170 bifunctional 5,10-met 94.5 0.084 1.8E-06 52.3 6.4 72 127-233 157-229 (284)
381 PRK14180 bifunctional 5,10-met 94.5 0.092 2E-06 52.1 6.7 72 127-233 158-230 (282)
382 PRK10538 malonic semialdehyde 94.5 0.32 6.9E-06 46.6 10.4 41 128-170 1-42 (248)
383 cd05211 NAD_bind_Glu_Leu_Phe_V 94.5 0.16 3.4E-06 48.6 8.0 94 127-235 23-129 (217)
384 PRK07878 molybdopterin biosynt 94.5 0.13 2.7E-06 53.7 8.0 93 127-220 42-153 (392)
385 PRK07326 short chain dehydroge 94.4 0.24 5.2E-06 46.9 9.3 41 128-170 7-48 (237)
386 PLN02520 bifunctional 3-dehydr 94.4 0.14 2.9E-06 55.6 8.4 43 127-171 379-421 (529)
387 PRK06567 putative bifunctional 94.4 0.11 2.4E-06 59.4 8.0 34 126-161 382-415 (1028)
388 PLN03209 translocon at the inn 94.4 0.09 1.9E-06 57.1 6.9 42 127-170 80-122 (576)
389 PF00984 UDPG_MGDP_dh: UDP-glu 94.4 0.048 1E-06 45.2 3.7 85 333-437 8-92 (96)
390 cd01076 NAD_bind_1_Glu_DH NAD( 94.4 0.2 4.2E-06 48.3 8.5 95 127-235 31-138 (227)
391 COG0665 DadA Glycine/D-amino a 94.4 0.054 1.2E-06 55.5 4.9 36 125-162 2-37 (387)
392 PRK14187 bifunctional 5,10-met 94.3 0.1 2.2E-06 52.1 6.5 72 127-233 160-232 (294)
393 TIGR01373 soxB sarcosine oxida 94.3 0.054 1.2E-06 56.2 4.9 48 109-162 16-65 (407)
394 PRK08340 glucose-1-dehydrogena 94.3 0.32 6.9E-06 47.0 10.0 41 128-170 1-42 (259)
395 PRK07236 hypothetical protein; 94.3 0.054 1.2E-06 55.9 4.9 35 126-162 5-39 (386)
396 PRK06753 hypothetical protein; 94.3 0.051 1.1E-06 55.6 4.6 34 128-163 1-34 (373)
397 TIGR03466 HpnA hopanoid-associ 94.3 0.034 7.4E-07 55.3 3.2 72 128-208 1-73 (328)
398 PRK02006 murD UDP-N-acetylmura 94.3 0.14 3E-06 55.0 8.1 68 127-206 7-76 (498)
399 PRK01390 murD UDP-N-acetylmura 94.3 0.11 2.5E-06 55.0 7.3 44 127-172 9-52 (460)
400 PRK09186 flagellin modificatio 94.3 0.31 6.7E-06 46.7 9.8 44 125-170 2-46 (256)
401 PLN02897 tetrahydrofolate dehy 94.3 0.095 2.1E-06 53.2 6.3 72 127-233 214-286 (345)
402 PRK07877 hypothetical protein; 94.2 0.09 1.9E-06 58.8 6.6 92 127-219 107-216 (722)
403 PRK14182 bifunctional 5,10-met 94.2 0.12 2.6E-06 51.3 6.7 73 126-233 156-229 (282)
404 PLN02616 tetrahydrofolate dehy 94.2 0.096 2.1E-06 53.4 6.2 72 127-233 231-303 (364)
405 PRK08374 homoserine dehydrogen 94.2 0.086 1.9E-06 53.8 5.9 105 127-236 2-125 (336)
406 PF13450 NAD_binding_8: NAD(P) 94.2 0.074 1.6E-06 41.0 4.2 30 132-163 1-30 (68)
407 PLN03075 nicotianamine synthas 94.2 0.49 1.1E-05 47.3 11.0 103 126-233 123-233 (296)
408 PRK14171 bifunctional 5,10-met 94.2 0.12 2.5E-06 51.4 6.6 72 127-233 159-231 (288)
409 PRK05868 hypothetical protein; 94.2 0.054 1.2E-06 55.8 4.4 35 127-163 1-35 (372)
410 PRK12771 putative glutamate sy 94.1 0.11 2.5E-06 56.6 7.2 34 126-161 136-169 (564)
411 PRK07411 hypothetical protein; 94.1 0.15 3.3E-06 53.0 7.7 93 127-220 38-149 (390)
412 PRK06182 short chain dehydroge 94.1 0.1 2.3E-06 50.8 6.2 41 127-169 3-44 (273)
413 PRK14193 bifunctional 5,10-met 94.1 0.11 2.5E-06 51.5 6.3 72 127-233 158-232 (284)
414 PRK05993 short chain dehydroge 94.1 0.13 2.7E-06 50.5 6.7 42 127-170 4-46 (277)
415 PRK14573 bifunctional D-alanyl 94.0 0.15 3.3E-06 58.1 8.1 69 124-207 1-71 (809)
416 PLN02214 cinnamoyl-CoA reducta 94.0 0.11 2.5E-06 52.7 6.3 75 127-208 10-90 (342)
417 PLN02662 cinnamyl-alcohol dehy 94.0 0.13 2.8E-06 51.2 6.7 36 127-164 4-40 (322)
418 TIGR01745 asd_gamma aspartate- 93.9 0.36 7.8E-06 49.6 9.8 93 128-234 1-98 (366)
419 PRK14181 bifunctional 5,10-met 93.9 0.13 2.9E-06 51.0 6.5 74 127-233 153-229 (287)
420 PRK12939 short chain dehydroge 93.9 0.43 9.3E-06 45.4 10.0 41 127-169 7-48 (250)
421 PRK12779 putative bifunctional 93.9 0.13 2.8E-06 59.6 7.1 34 127-162 306-339 (944)
422 PRK14174 bifunctional 5,10-met 93.8 0.17 3.7E-06 50.5 6.9 72 127-233 159-235 (295)
423 PF01494 FAD_binding_3: FAD bi 93.7 0.074 1.6E-06 53.1 4.4 34 128-163 2-35 (356)
424 PRK05732 2-octaprenyl-6-methox 93.7 0.079 1.7E-06 54.5 4.8 34 126-161 2-38 (395)
425 PRK14184 bifunctional 5,10-met 93.7 0.18 4E-06 50.0 7.0 72 127-233 157-233 (286)
426 PLN02657 3,8-divinyl protochlo 93.7 0.067 1.5E-06 55.6 4.1 39 124-164 57-96 (390)
427 PF01266 DAO: FAD dependent ox 93.7 0.098 2.1E-06 52.3 5.2 31 129-161 1-31 (358)
428 PRK07774 short chain dehydroge 93.6 0.5 1.1E-05 45.0 9.9 41 127-169 6-47 (250)
429 PLN02780 ketoreductase/ oxidor 93.6 0.4 8.6E-06 48.4 9.5 42 127-170 53-95 (320)
430 cd05312 NAD_bind_1_malic_enz N 93.6 0.6 1.3E-05 46.2 10.3 101 127-237 25-144 (279)
431 PRK13394 3-hydroxybutyrate deh 93.6 0.44 9.4E-06 45.7 9.4 42 127-170 7-49 (262)
432 PRK07588 hypothetical protein; 93.6 0.081 1.8E-06 54.6 4.5 34 128-163 1-34 (391)
433 PRK09242 tropinone reductase; 93.5 0.66 1.4E-05 44.6 10.6 42 127-170 9-51 (257)
434 PRK06139 short chain dehydroge 93.5 0.52 1.1E-05 47.8 10.2 42 127-170 7-49 (330)
435 PRK07494 2-octaprenyl-6-methox 93.5 0.087 1.9E-06 54.2 4.5 33 128-162 8-40 (388)
436 PRK07538 hypothetical protein; 93.5 0.086 1.9E-06 55.0 4.5 34 128-163 1-34 (413)
437 PRK11728 hydroxyglutarate oxid 93.5 0.097 2.1E-06 54.2 4.9 34 127-162 2-37 (393)
438 TIGR01723 hmd_TIGR 5,10-methen 93.4 4.3 9.3E-05 40.1 15.5 165 185-360 125-301 (340)
439 PLN02695 GDP-D-mannose-3',5'-e 93.4 0.089 1.9E-06 54.2 4.5 38 123-162 17-55 (370)
440 PRK15181 Vi polysaccharide bio 93.4 0.16 3.4E-06 51.7 6.3 40 121-162 9-49 (348)
441 PRK11259 solA N-methyltryptoph 93.4 0.098 2.1E-06 53.4 4.7 33 128-162 4-36 (376)
442 COG0190 FolD 5,10-methylene-te 93.4 0.17 3.8E-06 49.8 6.1 72 127-233 156-228 (283)
443 cd08237 ribitol-5-phosphate_DH 93.4 0.63 1.4E-05 47.2 10.6 91 127-232 164-255 (341)
444 PRK09880 L-idonate 5-dehydroge 93.4 0.73 1.6E-05 46.6 11.0 92 127-233 170-266 (343)
445 cd01489 Uba2_SUMO Ubiquitin ac 93.4 0.17 3.7E-06 51.0 6.2 33 129-162 1-33 (312)
446 PRK08849 2-octaprenyl-3-methyl 93.4 0.096 2.1E-06 54.0 4.6 34 127-162 3-36 (384)
447 PRK08017 oxidoreductase; Provi 93.3 0.19 4.2E-06 48.1 6.4 40 128-169 3-43 (256)
448 PLN02172 flavin-containing mon 93.3 0.096 2.1E-06 55.8 4.6 38 124-163 7-44 (461)
449 PRK05875 short chain dehydroge 93.3 0.65 1.4E-05 45.1 10.2 41 127-169 7-48 (276)
450 PRK08773 2-octaprenyl-3-methyl 93.3 0.1 2.2E-06 53.9 4.6 34 127-162 6-39 (392)
451 cd08230 glucose_DH Glucose deh 93.3 0.59 1.3E-05 47.5 10.3 93 127-232 173-268 (355)
452 PRK10637 cysG siroheme synthas 93.3 0.94 2E-05 48.2 12.1 73 127-212 12-85 (457)
453 PRK07109 short chain dehydroge 93.2 0.64 1.4E-05 47.1 10.4 42 127-170 8-50 (334)
454 PRK13535 erythrose 4-phosphate 93.2 0.16 3.5E-06 51.7 5.8 104 127-233 1-122 (336)
455 PRK07890 short chain dehydroge 93.2 0.65 1.4E-05 44.5 9.9 42 127-170 5-47 (258)
456 PRK09853 putative selenate red 93.2 0.25 5.4E-06 57.1 7.9 35 126-162 538-572 (1019)
457 PRK08850 2-octaprenyl-6-methox 93.2 0.11 2.4E-06 54.0 4.7 35 125-161 2-36 (405)
458 PRK14168 bifunctional 5,10-met 93.2 0.19 4.1E-06 50.2 6.1 74 127-233 161-237 (297)
459 cd01491 Ube1_repeat1 Ubiquitin 93.2 0.96 2.1E-05 45.1 11.1 35 127-162 19-53 (286)
460 PRK07024 short chain dehydroge 93.2 0.56 1.2E-05 45.2 9.4 42 127-170 2-44 (257)
461 PRK00961 H(2)-dependent methyl 93.1 4.3 9.4E-05 40.0 15.0 165 185-360 127-303 (342)
462 PTZ00188 adrenodoxin reductase 93.1 0.15 3.3E-06 54.3 5.8 82 127-211 39-138 (506)
463 COG1832 Predicted CoA-binding 93.1 0.73 1.6E-05 40.5 8.9 96 123-240 12-111 (140)
464 PRK05854 short chain dehydroge 93.1 0.75 1.6E-05 46.1 10.5 41 127-169 14-55 (313)
465 PRK05693 short chain dehydroge 93.1 0.12 2.6E-06 50.4 4.6 42 127-170 1-43 (274)
466 PRK06124 gluconate 5-dehydroge 93.0 0.69 1.5E-05 44.3 9.9 42 127-170 11-53 (256)
467 PRK07364 2-octaprenyl-6-methox 93.0 0.11 2.3E-06 54.0 4.4 35 127-163 18-52 (415)
468 PRK12810 gltD glutamate syntha 93.0 0.28 6E-06 52.3 7.6 34 127-162 143-176 (471)
469 PRK07208 hypothetical protein; 93.0 0.12 2.5E-06 55.0 4.7 37 124-162 1-37 (479)
470 COG0654 UbiH 2-polyprenyl-6-me 93.0 0.12 2.6E-06 53.5 4.7 33 127-161 2-34 (387)
471 PRK07523 gluconate 5-dehydroge 93.0 0.77 1.7E-05 44.0 10.1 41 127-169 10-51 (255)
472 PRK08013 oxidoreductase; Provi 93.0 0.12 2.5E-06 53.8 4.6 34 128-163 4-37 (400)
473 COG0771 MurD UDP-N-acetylmuram 92.9 0.18 3.8E-06 53.3 5.8 36 127-164 7-42 (448)
474 TIGR03649 ergot_EASG ergot alk 92.9 0.12 2.5E-06 50.9 4.3 34 129-164 1-35 (285)
475 PRK05867 short chain dehydroge 92.9 0.64 1.4E-05 44.6 9.5 42 127-170 9-51 (253)
476 PRK14185 bifunctional 5,10-met 92.9 0.23 5.1E-06 49.5 6.4 74 127-233 157-233 (293)
477 PRK08251 short chain dehydroge 92.9 0.99 2.1E-05 43.0 10.7 42 127-170 2-44 (248)
478 PRK07814 short chain dehydroge 92.9 0.7 1.5E-05 44.7 9.7 42 127-170 10-52 (263)
479 KOG1399 Flavin-containing mono 92.9 0.1 2.2E-06 55.2 4.0 35 127-163 6-40 (448)
480 PRK07478 short chain dehydroge 92.9 0.79 1.7E-05 43.9 10.0 41 128-170 7-48 (254)
481 PLN02650 dihydroflavonol-4-red 92.9 0.24 5.2E-06 50.3 6.6 80 127-208 5-86 (351)
482 PF03949 Malic_M: Malic enzyme 92.9 0.64 1.4E-05 45.5 9.1 102 127-237 25-145 (255)
483 PRK05884 short chain dehydroge 92.9 0.24 5.2E-06 46.9 6.3 41 128-170 1-42 (223)
484 PRK08213 gluconate 5-dehydroge 92.8 0.74 1.6E-05 44.3 9.7 41 127-169 12-53 (259)
485 PRK06949 short chain dehydroge 92.8 0.85 1.8E-05 43.6 10.1 42 127-170 9-51 (258)
486 TIGR03219 salicylate_mono sali 92.8 0.12 2.6E-06 53.8 4.5 34 128-163 1-35 (414)
487 PRK02705 murD UDP-N-acetylmura 92.8 0.37 8E-06 51.0 8.2 32 129-162 2-33 (459)
488 PRK12826 3-ketoacyl-(acyl-carr 92.8 0.6 1.3E-05 44.3 9.0 39 127-167 6-45 (251)
489 PRK06194 hypothetical protein; 92.8 0.69 1.5E-05 45.2 9.6 41 127-169 6-47 (287)
490 PRK08643 acetoin reductase; Va 92.8 0.8 1.7E-05 43.9 9.8 41 128-170 3-44 (256)
491 PRK07045 putative monooxygenas 92.7 0.13 2.8E-06 53.1 4.5 35 127-163 5-39 (388)
492 PRK07102 short chain dehydroge 92.7 0.27 5.9E-06 46.8 6.4 41 127-169 1-42 (243)
493 PLN02896 cinnamyl-alcohol dehy 92.7 0.24 5.2E-06 50.4 6.4 77 127-208 10-88 (353)
494 PRK06172 short chain dehydroge 92.6 0.86 1.9E-05 43.6 9.9 41 127-169 7-48 (253)
495 PRK07825 short chain dehydroge 92.6 1.1 2.3E-05 43.6 10.6 42 127-170 5-47 (273)
496 PRK06197 short chain dehydroge 92.6 0.95 2.1E-05 44.9 10.4 40 127-168 16-56 (306)
497 PRK06200 2,3-dihydroxy-2,3-dih 92.6 1.1 2.4E-05 43.2 10.6 42 127-170 6-48 (263)
498 PRK08267 short chain dehydroge 92.6 0.28 6.1E-06 47.2 6.4 42 127-170 1-43 (260)
499 PRK07806 short chain dehydroge 92.5 0.4 8.7E-06 45.7 7.4 34 127-162 6-40 (248)
500 PRK07831 short chain dehydroge 92.5 1 2.2E-05 43.4 10.3 41 127-169 17-59 (262)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.3e-58 Score=452.41 Aligned_cols=325 Identities=46% Similarity=0.660 Sum_probs=315.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
+|||+|||+|+||+++|..|+++| |+|++|.|+++.+++|+..+.|.+|+|+..+|+++.+++|++++++++|+|+++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 479999999999999999999999 999999999999999999988999999999999999999999999999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~ 286 (458)
||++.+++++.++.++++++.++|+++||+.+++.+.+++++++.++.. .+++++||+++.|+++|.++.+++++.|.
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~--~~~vLSGPs~A~EVa~g~pta~~vas~d~ 156 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN--PIAVLSGPSFAKEVAQGLPTAVVVASNDQ 156 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC--eEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence 9999999999999999999999999999999999999999999998853 48999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (458)
Q Consensus 287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~ 366 (458)
+.+++++.+|.+..|+++.++|+.|+++++++||++|+++|+.+++.+|+|+.++++.++++||.+++.++|.+++++++
T Consensus 157 ~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g 236 (329)
T COG0240 157 EAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG 236 (329)
T ss_pred HHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHH
Q 012720 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (458)
Q Consensus 367 ~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (458)
++|+||+++||++.+|||+++|..+++|.+.++.+.++++++||.++++.++++++++|+++|+++.+|++++++.+|++
T Consensus 237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~~~~~~~ 316 (329)
T COG0240 237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYEGLDPKE 316 (329)
T ss_pred cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 012720 447 AVLELMSLP 455 (458)
Q Consensus 447 ~~~~l~~~~ 455 (458)
+++.||.++
T Consensus 317 ~~~~L~~r~ 325 (329)
T COG0240 317 AIEELMGRD 325 (329)
T ss_pred HHHHHhccc
Confidence 999999876
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-52 Score=424.96 Aligned_cols=327 Identities=28% Similarity=0.416 Sum_probs=306.5
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720 125 ERTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (458)
Q Consensus 125 ~~~~kI~IIGaG~mG~~iA~~La~aG-----~~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (458)
-+.|||+|||+|+||+++|..|+++| ++|+|.+|.|+++ .++.+++.+.+.+|+|+.++|+++.+++|++
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 34689999999999999999999986 2379999999986 5899999999999999999999999999999
Q ss_pred hhcCCCCEEEEcCccccHHHHHHhhhh--cCCCCCeEEEeccCCCcchh--hhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720 195 TALLGADYCLHAMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFALE 270 (458)
Q Consensus 195 ea~~~aDiVilaVp~~~v~~vl~~i~~--~l~~~~ivV~~snGi~~~t~--~~l~e~l~~~lg~~~~~~~vl~gP~~a~e 270 (458)
++++++|+||++||++.++++++++.+ .++++.++|++++|+..++. ..+++++.+.++. ++.+++||+++.|
T Consensus 89 eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A~E 165 (365)
T PTZ00345 89 EAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVAND 165 (365)
T ss_pred HHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHHHH
Confidence 999999999999999999999999998 78878899999999998765 6789999998863 5889999999999
Q ss_pred HhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720 271 LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (458)
Q Consensus 271 i~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~ 350 (458)
++.+.++.+++++.+.+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+.+++++++|..++++.++++|+
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em 245 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEM 245 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC--CccccccccCCcchhhhhccCCCccchHHHHhhCC---CChHHHHhhc--cccchhhhHHHHHHHHHHH
Q 012720 351 RWLATKMGA--KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG---EKLDDILSSM--NQVAEGVSTAGAVIALAQK 423 (458)
Q Consensus 351 ~~la~a~Gi--~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g---~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~ 423 (458)
.++++++|. ++++|++++|+||+++||++ +|||++|..+.+| ++.+++.+++ ++++||..++..+++++++
T Consensus 246 ~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~ 323 (365)
T PTZ00345 246 KLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLES 323 (365)
T ss_pred HHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHH
Confidence 999999974 89999999999999999998 9999999999985 5788888776 8999999999999999999
Q ss_pred cCC--CCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720 424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456 (458)
Q Consensus 424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~ 456 (458)
+++ ++|+++++|+++.++.+|+++++.||++|.
T Consensus 324 ~~i~~~~Pi~~~vy~il~~~~~~~~~~~~l~~r~~ 358 (365)
T PTZ00345 324 HDLKKEFPLFTVTYKIAFEGADPSSLIDVLSTNEL 358 (365)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence 999 899999999999999999999999999874
No 3
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-51 Score=415.63 Aligned_cols=326 Identities=38% Similarity=0.588 Sum_probs=307.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~-~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.+|||+|||+|+||+++|..|+++| +|++|.|++++++.+++.+.+..+++ +.+++.++.+++|++++++++|+||
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 4689999999999999999999987 48889999999999999888778887 6777878889999988889999999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~ 284 (458)
+|||+++++++++++.+++++++++|+++||++.++.+.+++.+.+.++. ..+.++.||+++.+++.|.++.+++++.
T Consensus 83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~ 160 (341)
T PRK12439 83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMP 160 (341)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence 99999999999999999999889999999999998888899999887764 3567899999999999999988888888
Q ss_pred CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012720 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (458)
Q Consensus 285 d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~ 364 (458)
+.+..+.++++|+..+|+++.++|+.+++|++++||++++++|+..++.+++|...+++.+++.|+.++++++|.+++++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~ 240 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF 240 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCH
Q 012720 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTP 444 (458)
Q Consensus 365 ~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~ 444 (458)
++++|+||+++||++.++||+++|..+++|++.+++.+++++++||...++.++++++++++++|+.+++|+++.++.+|
T Consensus 241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~~~~~~ 320 (341)
T PRK12439 241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVINHGSTV 320 (341)
T ss_pred cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 012720 445 KKAVLELMSLPQ 456 (458)
Q Consensus 445 ~~~~~~l~~~~~ 456 (458)
+++++.||++|.
T Consensus 321 ~~~~~~l~~~~~ 332 (341)
T PRK12439 321 EQAYRGLIAEVP 332 (341)
T ss_pred HHHHHHHhcCCC
Confidence 999999999875
No 4
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=3e-51 Score=413.26 Aligned_cols=318 Identities=34% Similarity=0.471 Sum_probs=301.9
Q ss_pred eEEEECcchHHHHHHHHHHhcC------CCCeEEEEeC-----CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012720 129 KVVVLGGGSFGTAMAAHVANKK------SQLKVYMLMR-----DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG------~~~~V~v~~r-----~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (458)
||+|||+|+||+++|..|+++| ++++|++|.| +++..+.+++.+.+.+|+|+.++|+++++++|+++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999986 4589999999 7778889998888999999999999999999999999
Q ss_pred CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc--hhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccC
Q 012720 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKL 275 (458)
Q Consensus 198 ~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~--t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~ 275 (458)
+++|+||++||++.++++++++.+++++++++|+++||+..+ +...+++.+++.++. ++.+++||+++.|+++|.
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~ 157 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEK 157 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCC
Confidence 999999999999999999999999999999999999999988 888999999998853 588999999999999999
Q ss_pred CeEEEEccCC----HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012720 276 PTAMVVASKD----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (458)
Q Consensus 276 ~t~v~i~g~d----~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~ 351 (458)
++.+++++.+ .+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+.+++.+++|..++++.++++||.
T Consensus 158 pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~ 237 (342)
T TIGR03376 158 FSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI 237 (342)
T ss_pred CceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999888 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcc--ccccccCCcchhhhhccCCCccchHHHHhhC-CCChHHHHhh--ccccchhhhHHHHHHHHHHHcCC
Q 012720 352 WLATKMGAKPA--TITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSS--MNQVAEGVSTAGAVIALAQKYNV 426 (458)
Q Consensus 352 ~la~a~Gi~~~--~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~-g~~~e~~~~~--~~~~~eg~kd~g~v~~lA~~~gv 426 (458)
++++++|.+++ +|++++|+||+++||++ +||+++|..+++ |.+.+++.++ +++++||...++.++++++++++
T Consensus 238 ~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i 315 (342)
T TIGR03376 238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK 315 (342)
T ss_pred HHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence 99999999887 99999999999999999 999999999999 9999998888 78999999999999999999999
Q ss_pred C--CcHHHHHHHHHhcCCCHHHHHHHH
Q 012720 427 K--MPVLTAVARIIDNELTPKKAVLEL 451 (458)
Q Consensus 427 ~--~P~~~~v~~ll~~~~~~~~~~~~l 451 (458)
+ +|+++++|+++.++.+|+++++.|
T Consensus 316 ~~~~Pi~~~vy~il~~~~~~~~~~~~~ 342 (342)
T TIGR03376 316 DDEFPLFEAVYQILYEGLPPKKLPECL 342 (342)
T ss_pred CcCCCHHHHHHHHHhCCCCHHHHHhhC
Confidence 9 999999999999999999998754
No 5
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6e-46 Score=375.00 Aligned_cols=322 Identities=36% Similarity=0.587 Sum_probs=295.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVila 206 (458)
|||+|||+|+||+++|..|+++| ++|++|+|+++.++.+++.+.+.+++++..++.+++++++.++++ .++|+||+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g--~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK--ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 68999999999999999999999 999999999999999998776677777777888888888888766 589999999
Q ss_pred CccccHHHHHHhhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720 207 MPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~-~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d 285 (458)
||+++++++++++.+ ++.+++.||+++||++.++...+++.+.+.++. .++.++.||+++.+++.+.++.+.+++.+
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 999999999999998 888888899999999887666677888887764 35678899999998887777777788888
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC--Cccc
Q 012720 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA--KPAT 363 (458)
Q Consensus 286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi--~~~~ 363 (458)
.+..++++++|+..+++++.++|+.+.+|+|++||++++++|+..++.++.|...+++.+++.|+.++++++|+ ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 88889999999999999999999999999999999999999999999999899999999999999999999998 7899
Q ss_pred cccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCC
Q 012720 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELT 443 (458)
Q Consensus 364 ~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~ 443 (458)
+++++|++|++.+|++..+||+++|+++++|...+|+.+.+++++||+..++.++++++++|+++|+++++|+++.++.+
T Consensus 237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~~~~~ 316 (326)
T PRK14620 237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLYENIS 316 (326)
T ss_pred hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence 99999999999999988899999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 012720 444 PKKAVLELMS 453 (458)
Q Consensus 444 ~~~~~~~l~~ 453 (458)
|+++++.||.
T Consensus 317 ~~~~~~~~~~ 326 (326)
T PRK14620 317 LEKTISVILS 326 (326)
T ss_pred HHHHHHHHhC
Confidence 9999999984
No 6
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-43 Score=357.25 Aligned_cols=325 Identities=44% Similarity=0.671 Sum_probs=292.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
||||+|||+|+||++||..|+++| ++|++|+|++++++.+++.+....+.++..++.++.++++++++++++|+||+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG--HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 479999999999999999999999 999999999999999988776655556655666677788888888899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~ 286 (458)
||+++++++++++.+.++++++||+++||+.+++.+.+++.+.+.++.. ....++.||+++.+...+.++.+.+++.+.
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 9999999999999999899999999999999987778888888776531 246789999999887777777777888889
Q ss_pred HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (458)
Q Consensus 287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~ 366 (458)
+.+++++++|+..++++..++|+.+.+|+|+++|++++++|...++++++|...+++..+++|+..+|+++|++++++.+
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHH
Q 012720 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (458)
Q Consensus 367 ~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (458)
+.+.+|++.++.+..++++.+|+++..|++.+++.+.++++.|+.||+++++++|+++|+++|+++++|+++.++.+|++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~~~~~~~~~ 317 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEMPITEAVYAVLYEGKDPRE 317 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCCCCHHH
Confidence 88888888888888899999999999888776666666688999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 012720 447 AVLELMSL 454 (458)
Q Consensus 447 ~~~~l~~~ 454 (458)
+++.|+++
T Consensus 318 ~~~~~~~~ 325 (325)
T PRK00094 318 AVEDLMGR 325 (325)
T ss_pred HHHHHhcC
Confidence 99999874
No 7
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-43 Score=358.66 Aligned_cols=321 Identities=35% Similarity=0.522 Sum_probs=283.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+|||+|||+|+||++||.+|+++| ++|++|+|++++++.+++.+.+..++++..++.++..+++++++++++|+||+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G--~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence 3689999999999999999999999 99999999999999998776665566666666667788888888899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t--~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
|||+++++++++. ++++.++|+++||+.+++ .+.+++.+.+... ..+.++.||+++.+++.+.++..++++
T Consensus 81 ~v~~~~~~~v~~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~ 153 (328)
T PRK14618 81 AVPSKALRETLAG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVAS 153 (328)
T ss_pred ECchHHHHHHHHh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEe
Confidence 9999988877754 456789999999998764 4566666655222 235689999999999888877777888
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~ 363 (458)
++.+.+++++++|+..+++++.++|+.+++|++++||++++++|++.++++++|...+++.++++|+..+++++|+++++
T Consensus 154 ~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~ 233 (328)
T PRK14618 154 PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEAT 233 (328)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCC
Q 012720 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELT 443 (458)
Q Consensus 364 ~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~ 443 (458)
++++++.||++.+|.+..+||+.+|.++.+|...+++. ....+.++.||+++++++++++|+++|+.+.+|+++.++.+
T Consensus 234 ~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~-~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~~~~~~ 312 (328)
T PRK14618 234 FYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLE-AGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVARGGWD 312 (328)
T ss_pred hhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHH-HcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence 99999999999999998999999898898886665443 23578899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 012720 444 PKKAVLELMSLPQ 456 (458)
Q Consensus 444 ~~~~~~~l~~~~~ 456 (458)
|+++++.|+++|.
T Consensus 313 ~~~~~~~~~~~~~ 325 (328)
T PRK14618 313 PLAGLRSLMGREA 325 (328)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999874
No 8
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-42 Score=346.42 Aligned_cols=298 Identities=37% Similarity=0.584 Sum_probs=274.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.|||+|||+|+||++||.+|+++| |+|++|+|++. ++++++++++|+||+|
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G--~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG--HRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 479999999999999999999999 99999999852 1566778899999999
Q ss_pred CccccHHHHHHhhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720 207 MPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~-l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d 285 (458)
+|+.+++++++++.++ ++++++||++++|+++++...+++.+.+.+.. .++.++.||.++.++..+.++..++++++
T Consensus 55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~ 132 (308)
T PRK14619 55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRD 132 (308)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCC
Confidence 9999999999998764 77889999999999998878888888776643 35667899999999888877788889999
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 012720 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365 (458)
Q Consensus 286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~ 365 (458)
.+.+++++++|+..+++++.++|+.+.+|++++||++++++|+..++++++|...+++.++++|+.++++++|+++++++
T Consensus 133 ~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~ 212 (308)
T PRK14619 133 LAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFY 212 (308)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHH
Q 012720 366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPK 445 (458)
Q Consensus 366 ~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~ 445 (458)
+++|+||+..+|.+..+||+++|+++..|++.+++.++.++++||.||+++++++++++|+++|+.+.+|+++.++.+|+
T Consensus 213 ~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~~~~~~~ 292 (308)
T PRK14619 213 GLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQGEITPQ 292 (308)
T ss_pred cccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCCCHH
Confidence 99999999999998889999999999999999888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 012720 446 KAVLELMSLP 455 (458)
Q Consensus 446 ~~~~~l~~~~ 455 (458)
++++.|++++
T Consensus 293 ~~~~~l~~~~ 302 (308)
T PRK14619 293 QALEELMERD 302 (308)
T ss_pred HHHHHHHcCC
Confidence 9999999974
No 9
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=3.7e-41 Score=327.46 Aligned_cols=326 Identities=36% Similarity=0.535 Sum_probs=291.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-------HHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-------VCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG-----~~~~V~v~~r~~~-------~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (458)
...||+|||+|+||++||+.+.++- +..+|.+|.+.++ ..|-|+..+.+.+|+|+.++|.++.+++|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3579999999999999999998752 2468999986642 345678888999999999999999999999
Q ss_pred HhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc----hhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720 194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN----TLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (458)
Q Consensus 194 ~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~----t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ 269 (458)
.+++++||++|+.+|.+.+..++++|..+++++...||++||++.. ..+.+++.+.+.+|. ++.++.||+.|.
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI---~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI---PCSVLMGANIAS 176 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC---CceeecCCchHH
Confidence 9999999999999999999999999999999999999999999853 256889999999985 578999999999
Q ss_pred HHhccCCeEEEEccCCHHHHH-HHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720 270 ELMNKLPTAMVVASKDRKLAN-AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (458)
Q Consensus 270 ei~~g~~t~v~i~g~d~e~~e-~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~ 348 (458)
|++++..+...+++.++.... .+..+|++..|++...+|..+++++++|||++|+++|+.+++.+++|...++++.++.
T Consensus 177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~ 256 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL 256 (372)
T ss_pred HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence 999998888888887655444 4999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CC-CccccccccCCcchhhhhccCCCccchHHHHhhCC-CChHHHHhhc--cccchhhhHHHHHHHHHHH
Q 012720 349 EIRWLATKM-GA-KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQK 423 (458)
Q Consensus 349 E~~~la~a~-Gi-~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~ 423 (458)
|+..+++.+ .. .++++.+.+|++|++.||++ .||++.+..+.++ +++++.+..+ +|..+|..+++.++++.++
T Consensus 257 Em~~F~~~f~p~~~~~t~~escGvaDlitTC~g--GRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~ 334 (372)
T KOG2711|consen 257 EMIKFATHFYPGSKPTTFFESCGVADLITTCYG--GRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQK 334 (372)
T ss_pred HHHHHHHHhCCCCCcceeeccccHHHHHHHHhc--CccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHH
Confidence 999999996 33 78899999999999999997 5899988887664 7766555444 7899999999999999999
Q ss_pred cCC--CCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720 424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456 (458)
Q Consensus 424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~ 456 (458)
.|+ .+|+..++|+++.++..++++++.|.++|.
T Consensus 335 ~~l~~kfPlftaVykI~~~~~~~~~lle~l~~~~~ 369 (372)
T KOG2711|consen 335 KGLVEKFPLFTAVYKICYERLPPQALLECLRNHPE 369 (372)
T ss_pred cChhhhCcHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 999 899999999999999999999999998874
No 10
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=2.8e-30 Score=252.52 Aligned_cols=256 Identities=19% Similarity=0.210 Sum_probs=203.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
+||+|||+|.||.+||.+|.++| |+|++|+|++++ ++.+.+.| .....++.|+++++|+||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG--~~v~v~~r~~~ka~~~~~~~G--------------a~~a~s~~eaa~~aDvVitm 64 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG--HEVTVYNRTPEKAAELLAAAG--------------ATVAASPAEAAAEADVVITM 64 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC--CEEEEEeCChhhhhHHHHHcC--------------CcccCCHHHHHHhCCEEEEe
Confidence 58999999999999999999999 999999999988 55665555 34556888889999999999
Q ss_pred Ccc-ccHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 207 MPV-QFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 207 Vp~-~~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
|+. .++++|+. ++.+.+++|+++|+++ ++++++.+.+++.+++. |. .++..|..+........+..++.
T Consensus 65 v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tisp~~a~~~a~~~~~~-G~-----~~lDAPVsGg~~~A~~GtLtimv 137 (286)
T COG2084 65 LPDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TISPETARELAAALAAK-GL-----EFLDAPVSGGVPGAAAGTLTIMV 137 (286)
T ss_pred cCCHHHHHHHHhCccchhhcCCCCCEEEECC-CCCHHHHHHHHHHHHhc-CC-----cEEecCccCCchhhhhCceEEEe
Confidence 996 67999994 5888899999999999 69998878888777664 43 46677766655544455667888
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~ 362 (458)
|++++.+++++++|+..|.++++.++. |.+..+|+.||.+......++.|++.+++++|++++
T Consensus 138 GG~~~~f~r~~pvl~~~g~~i~~~G~~-----------------G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~ 200 (286)
T COG2084 138 GGDAEAFERAKPVLEAMGKNIVHVGPV-----------------GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPD 200 (286)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEECCC-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 999999999999999999999988774 556677888999999999999999999999999999
Q ss_pred cccccc--CCcch-hhh--hccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720 363 TITGLS--GTGDI-MLT--CFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (458)
Q Consensus 363 ~~~~~~--g~gd~-~~t--~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l 437 (458)
.++++. +.++. +.. +..+..++|+++ +... ...||++++.+.|++.|+++|+.+++.++
T Consensus 201 ~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~------F~v~----------~~~KDl~la~~~A~~~g~~lP~~~~~~~l 264 (286)
T COG2084 201 VVLEVISGGAAGSWILENYGPRMLEGDFSPG------FAVD----------LMLKDLGLALDAAKELGAPLPLTALAAEL 264 (286)
T ss_pred HHHHHHhccccCChHHHhhcchhhcCCCCcc------hhHH----------HHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 998763 22221 111 111122233322 2222 24699999999999999999999999888
Q ss_pred Hh
Q 012720 438 ID 439 (458)
Q Consensus 438 l~ 439 (458)
+.
T Consensus 265 y~ 266 (286)
T COG2084 265 YA 266 (286)
T ss_pred HH
Confidence 85
No 11
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.96 E-value=4.2e-28 Score=243.72 Aligned_cols=287 Identities=14% Similarity=0.154 Sum_probs=201.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC-CCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-PEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~-~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.|||+|||+|+||+.+|..|+++| ++|+++.|++ .+.+++.|+..... +..... .+.+.+++++ ...+|+||+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD--YEAVRENGLQVDSVHGDFHLP-PVQAYRSAED-MPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC--HHHHHhCCeEEEeCCCCeeec-CceEEcchhh-cCCCCEEEE
Confidence 579999999999999999999999 9999999986 35676666532211 111111 1344555543 578999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CC-----EEEEECcccHHHHhccCCeEE
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QP-----FIALSGPSFALELMNKLPTAM 279 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~-~~-----~~vl~gP~~a~ei~~g~~t~v 279 (458)
|||+.++.++++.+.+.+.++++|++++||++.. +.+.+.++... .. .+...+|+...+...|.....
T Consensus 79 avK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG 152 (313)
T PRK06249 79 GLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLG 152 (313)
T ss_pred EecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEe
Confidence 9999999999999999999999999999999875 34444444321 11 112335554443222322111
Q ss_pred EEccCC-----HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHH
Q 012720 280 VVASKD-----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEI 350 (458)
Q Consensus 280 ~i~g~d-----~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~ 350 (458)
...+.+ .+..+.+.++|+..|+.+..++|+....|.|++.|+..++.+....+..+ +.....++..++.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~ 232 (313)
T PRK06249 153 YHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEV 232 (313)
T ss_pred cCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHH
Confidence 122223 46778899999999999999999999999999999766655555544433 334578999999999
Q ss_pred HHHHHHcCCCccc-cccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCC
Q 012720 351 RWLATKMGAKPAT-ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428 (458)
Q Consensus 351 ~~la~a~Gi~~~~-~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~ 428 (458)
.+++++.|++... +.+ ..+..+... ..+ .+|-+|+.+||++| + ...+|.++++|+++|+++
T Consensus 233 ~~va~a~Gi~~~~~~~~-----~~~~~~~~~-~~~~sSM~qD~~~gr~tE-i----------d~i~G~vv~~a~~~Gi~~ 295 (313)
T PRK06249 233 IQGAAACGHTLPEGYAD-----HMLAVTERM-PDYRPSMYHDFEEGRPLE-L----------EAIYANPLAAARAAGCAM 295 (313)
T ss_pred HHHHHhcCCCCChhHHH-----HHHHHhhcC-CCCCChHHHHHHCCCccc-H----------HHHhhHHHHHHHHhCCCC
Confidence 9999999998432 111 111111111 122 34667888888775 3 356799999999999999
Q ss_pred cHHHHHHHHHhcCC
Q 012720 429 PVLTAVARIIDNEL 442 (458)
Q Consensus 429 P~~~~v~~ll~~~~ 442 (458)
|+++.+|.+++..+
T Consensus 296 P~~~~l~~~l~~~e 309 (313)
T PRK06249 296 PRVEMLYQALEFLD 309 (313)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987654
No 12
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.96 E-value=1.1e-27 Score=238.80 Aligned_cols=285 Identities=18% Similarity=0.219 Sum_probs=205.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
|||+|||+|+||+.+|..|+++| ++|++++|+++.++.+++.|.... +......+..+++++++ +++|+||+||
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLRLE---DGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCccc---CCceeecccCCCChhHc-CCCCEEEEec
Confidence 68999999999999999999999 999999998888888887765431 11111112334566664 8999999999
Q ss_pred ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CC-----CEEEEECcccHHHHhccCCeEEEE
Q 012720 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQ-----PFIALSGPSFALELMNKLPTAMVV 281 (458)
Q Consensus 208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~-~~-----~~~vl~gP~~a~ei~~g~~t~v~i 281 (458)
|++++.++++.+.+.+.++++||+++||++.. +.+.+.++.. .. ..+...+|+...+.+.+. +.+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~---~~i 145 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR---LKI 145 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC---EEE
Confidence 99999999999999998889999999999764 2333433321 00 112355676665544332 234
Q ss_pred ccCC--HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHH
Q 012720 282 ASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLAT 355 (458)
Q Consensus 282 ~g~d--~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~la~ 355 (458)
+..+ .+..+.+.++|+..++.+...+|+...+|.|+++|+..++.+...+...+ ++....++..++.|+.++++
T Consensus 146 g~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 225 (304)
T PRK06522 146 GEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAE 225 (304)
T ss_pred eCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 4322 24578899999999999999999999999999999876666555555433 35677999999999999999
Q ss_pred HcCCCccccccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHH
Q 012720 356 KMGAKPATITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV 434 (458)
Q Consensus 356 a~Gi~~~~~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v 434 (458)
++|+++..-. + .+.+.........+ .+|-+|+.+|+++| + ...+|+++++|+++|+++|+++++
T Consensus 226 a~G~~~~~~~-~---~~~~~~~~~~~~~~~sSm~~D~~~gr~tE-i----------d~i~G~~v~~a~~~gv~~P~~~~l 290 (304)
T PRK06522 226 AEGVHLSVEE-V---REYVRQVIQKTAANTSSMLQDLEAGRPTE-I----------DAIVGYVLRRGRKHGIPTPLNDAL 290 (304)
T ss_pred HcCCCCChHH-H---HHHHHHHhhccCCCCchHHHHHHcCCCcc-c----------chhccHHHHHHHHcCCCCcHHHHH
Confidence 9998854211 0 01111111111122 24667888887765 2 256799999999999999999999
Q ss_pred HHHHhcCC
Q 012720 435 ARIIDNEL 442 (458)
Q Consensus 435 ~~ll~~~~ 442 (458)
|++++..+
T Consensus 291 ~~~~~~~~ 298 (304)
T PRK06522 291 YGLLKAKE 298 (304)
T ss_pred HHHHHHHH
Confidence 99997654
No 13
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.96 E-value=7.2e-28 Score=240.61 Aligned_cols=288 Identities=19% Similarity=0.221 Sum_probs=211.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
|||+|+|+|+||+.+|.+|+++| ++|+++.|++. ++++++.|+......+ ........+.+. +....+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~-~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDA-EALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccCh-hhcCCCCEEEEEe
Confidence 79999999999999999999999 99999999986 8999998875544333 111112223333 3467999999999
Q ss_pred ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------CCCEEEEECcccHHHHhccCCeEEEE
Q 012720 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFIALSGPSFALELMNKLPTAMVV 281 (458)
Q Consensus 208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~------~~~~~vl~gP~~a~ei~~g~~t~v~i 281 (458)
|+.+++++++.+.+.+++.+.|+.+|||+++. |.+.+.++.. ....++..||+...+.+.|......+
T Consensus 76 Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~ 149 (307)
T COG1893 76 KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGEL 149 (307)
T ss_pred ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccC
Confidence 99999999999999999999999999999985 2333333321 11223455666665444344333334
Q ss_pred ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHc
Q 012720 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKM 357 (458)
Q Consensus 282 ~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~la~a~ 357 (458)
.+++++..+.+.++|+..++++.+++|+....|.|++.|...++.+....++++ +.....++...+.|+..++++.
T Consensus 150 ~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~ 229 (307)
T COG1893 150 RGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE 229 (307)
T ss_pred CCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence 455568899999999999999999999999999999999876666655555443 3356789999999999999999
Q ss_pred CCCcc-ccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHH
Q 012720 358 GAKPA-TITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVA 435 (458)
Q Consensus 358 Gi~~~-~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~ 435 (458)
|+..+ ...+- ....+......++ +|-+|+.+|+++| + .+..|+++++|+++|+++|.++++|
T Consensus 230 g~~~~~~~~~~-----v~~~~~~~~~~~~sSM~qDl~~gr~tE-i----------d~i~G~vv~~a~~~gi~~P~~~~L~ 293 (307)
T COG1893 230 GVELPEEVVER-----VLAVIRATDAENYSSMLQDLEKGRPTE-I----------DAINGAVVRLAKKHGLATPVNDTLY 293 (307)
T ss_pred cCCCCHHHHHH-----HHHHHHhcccccCchHHHHHHcCCccc-H----------HHHhhHHHHHHHHhCCCCcHHHHHH
Confidence 96522 11110 1111112112333 4668888887775 2 3667999999999999999999999
Q ss_pred HHHhcCC
Q 012720 436 RIIDNEL 442 (458)
Q Consensus 436 ~ll~~~~ 442 (458)
++++..+
T Consensus 294 ~lvk~~e 300 (307)
T COG1893 294 ALLKAKE 300 (307)
T ss_pred HHHHHHH
Confidence 9998654
No 14
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.96 E-value=3.5e-27 Score=235.52 Aligned_cols=286 Identities=15% Similarity=0.151 Sum_probs=201.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+|||+|+||+.+|..|+++| ++|++|+| +++.+.+++.|.......+ ...+ ...+++.+++.+.+|+||+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVP--GPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEeCCCeEEec--ceeecCHHHccCCCCEEEEE
Confidence 68999999999999999999999 99999999 7788888876654322111 1111 23345666666899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CC-E----EEEECcccHHHHhccCCeEEE
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QP-F----IALSGPSFALELMNKLPTAMV 280 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~-~~-~----~vl~gP~~a~ei~~g~~t~v~ 280 (458)
||+.+++++++.+.+.+.++++||+++||++.. +.+.+.++... .. + +.+.+|+..... + ...+.
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~--~-~~~~~ 146 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQR--A-DHRLT 146 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEc--C-CCcEE
Confidence 999999999999999888899999999999754 23444443211 11 1 122234333221 1 11233
Q ss_pred Ecc---CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccC----CCcHHHHHHHHHHHHHHHH
Q 012720 281 VAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL----GNNSMAALVAQGCSEIRWL 353 (458)
Q Consensus 281 i~g---~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl----~~n~~~al~~~~l~E~~~l 353 (458)
++. ...+..+.+.++|...++++...+|+...+|.|++.|...++.+.....++ .++....++..++.|+.++
T Consensus 147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v 226 (305)
T PRK12921 147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV 226 (305)
T ss_pred EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 443 234677889999999999999999999999999999976665555544442 3455678999999999999
Q ss_pred HHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHH
Q 012720 354 ATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLT 432 (458)
Q Consensus 354 a~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~ 432 (458)
++++|+++...... +.+.........++ ++-+|+.+||++| + ....|+++++|+++|+++|+++
T Consensus 227 ~~a~G~~~~~~~~~----~~~~~~~~~~~~~~sSm~~D~~~gr~tE-i----------d~i~G~vv~~a~~~gv~~P~~~ 291 (305)
T PRK12921 227 ARAEGAPLRDDVVE----EIVKIFAGAPGDMKTSMLRDMEKGRPLE-I----------DHLQGVLLRRARAHGIPTPILD 291 (305)
T ss_pred HHHcCCCCChhHHH----HHHHHHhccCCCCCcHHHHHHHcCCccc-H----------HHHHHHHHHHHHHhCCCCcHHH
Confidence 99999985421100 01111011111222 4667888887765 2 3567999999999999999999
Q ss_pred HHHHHHhcCC
Q 012720 433 AVARIIDNEL 442 (458)
Q Consensus 433 ~v~~ll~~~~ 442 (458)
++|++++..+
T Consensus 292 ~l~~~~~~~~ 301 (305)
T PRK12921 292 TVYALLKAYE 301 (305)
T ss_pred HHHHHHHHHh
Confidence 9999997654
No 15
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=1.6e-26 Score=234.53 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=200.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~---l~~~i~a~~~~~ea~~~aDiV 203 (458)
||||+|||+|.||+++|..|+++| ++|++|+|++. .+.+++.|.......+.. .+..+..+++. +++.++|+|
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G--~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG--ADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC--CcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 589999999999999999999999 99999999763 577777665432222211 12335556666 457899999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CCC-----EEEEECcccHHHHhccCCe
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQP-----FIALSGPSFALELMNKLPT 277 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~-~~~-----~~vl~gP~~a~ei~~g~~t 277 (458)
|+|||+.++.++++.+.+.+.++++|++++||+... +.+.+.++.. ... .++..||+.+.+...|.
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~-- 149 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA-- 149 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc--
Confidence 999999999999999999999999999999998763 2344443321 111 12455776654332332
Q ss_pred EEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHHHHHHH
Q 012720 278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQGCSEIRWL 353 (458)
Q Consensus 278 ~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~k----l~~n~~~al~~~~l~E~~~l 353 (458)
+.++. .+.++++.++|+..++++.+.+|+.+..|.|+++|.+ ++.....+.. +.+.....++..++.|+..+
T Consensus 150 -l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v 225 (341)
T PRK08229 150 -LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRV 225 (341)
T ss_pred -eEecC--CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence 22332 2456899999999999999999999999999999973 3323222332 23445678899999999999
Q ss_pred HHHcCCCcccccccc--C------Ccchh-hh----hcc-CCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHH
Q 012720 354 ATKMGAKPATITGLS--G------TGDIM-LT----CFV-NLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIA 419 (458)
Q Consensus 354 a~a~Gi~~~~~~~~~--g------~gd~~-~t----~~~-~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~ 419 (458)
|++.|++++.+..+. + +.+.+ .. ... ......++-+|+.+||++| + ...+|++++
T Consensus 226 a~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sm~~D~~~~r~tE-i----------~~i~G~i~~ 294 (341)
T PRK08229 226 LKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLARSSMSDDLAAGRATE-I----------DWINGEIVR 294 (341)
T ss_pred HHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCccCchHHHHHHcCCcch-H----------HHHhhHHHH
Confidence 999999977654321 1 01100 00 001 1111124567777777764 2 256799999
Q ss_pred HHHHcCCCCcHHHHHHHHHhcC
Q 012720 420 LAQKYNVKMPVLTAVARIIDNE 441 (458)
Q Consensus 420 lA~~~gv~~P~~~~v~~ll~~~ 441 (458)
+|+++|+++|+++++|++++..
T Consensus 295 ~a~~~gv~~P~~~~~~~~~~~~ 316 (341)
T PRK08229 295 LAGRLGAPAPVNARLCALVHEA 316 (341)
T ss_pred HHHHcCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999644
No 16
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.95 E-value=6.2e-27 Score=225.31 Aligned_cols=274 Identities=17% Similarity=0.183 Sum_probs=211.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|||||+|+||..|+.+|.++| |.|++|||+.++++.+.+.|. ++.++|.|+.+.+|+||.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G--~kVtV~dr~~~k~~~f~~~Ga--------------~v~~sPaeVae~sDvvitm 98 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAG--YKVTVYDRTKDKCKEFQEAGA--------------RVANSPAEVAEDSDVVITM 98 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcC--CEEEEEeCcHHHHHHHHHhch--------------hhhCCHHHHHhhcCEEEEE
Confidence 578999999999999999999999 999999999999999998773 4667899999999999999
Q ss_pred Ccc-ccHHHHHHh---hhhcCCCCCeE-EEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012720 207 MPV-QFSSSFLEG---ISDYVDPGLPF-ISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (458)
Q Consensus 207 Vp~-~~v~~vl~~---i~~~l~~~~iv-V~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i 281 (458)
||. .++++++.+ +...++++... |+++ +++|++...+.+.+... .+.++.+|.++...+....+.+++
T Consensus 99 v~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmS-Tidp~~s~ei~~~i~~~------~~~~vDAPVSGg~~~A~~G~Ltim 171 (327)
T KOG0409|consen 99 VPNPKDVKDVLLGKSGVLSGIRPGKKATVDMS-TIDPDTSLEIAKAISNK------GGRFVDAPVSGGVKGAEEGTLTIM 171 (327)
T ss_pred cCChHhhHHHhcCCCcceeeccCCCceEEecc-ccCHHHHHHHHHHHHhC------CCeEEeccccCCchhhhcCeEEEE
Confidence 996 568888854 45555677666 8888 79998766666655443 356788888876555445566788
Q ss_pred ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (458)
Q Consensus 282 ~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~ 361 (458)
+++|++.++++.++|+..|..+.+.+.+ |.+..+|+++|.+.+....+++|++.+|+++|+++
T Consensus 172 agGde~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~ 234 (327)
T KOG0409|consen 172 AGGDEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDA 234 (327)
T ss_pred ecCcHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 8899999999999999999888776543 66677889999999999999999999999999999
Q ss_pred cccccccCCcc-----hhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720 362 ATITGLSGTGD-----IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436 (458)
Q Consensus 362 ~~~~~~~g~gd-----~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ 436 (458)
.++.++...|. +...+..+..++ +.-|+.++. ..||++++.+.|+..++++|+.....+
T Consensus 235 ~~l~eiln~G~~~S~~~~~~~p~m~k~d------y~p~f~~~~----------m~KDLgla~~~a~~~~~~~P~~slA~q 298 (327)
T KOG0409|consen 235 KKLLEILNTGRCWSSMFYNPVPGMLKGD------YNPGFALKL----------MVKDLGLALNAAESVKVPMPLGSLAHQ 298 (327)
T ss_pred HHHHHHHhcCCcccHHHhCcCchhhcCC------CCCcchHHH----------HHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 99887632221 111111111122 222334432 249999999999999999999988888
Q ss_pred HHh-------cCCCHHHHHHHHhcCCC
Q 012720 437 IID-------NELTPKKAVLELMSLPQ 456 (458)
Q Consensus 437 ll~-------~~~~~~~~~~~l~~~~~ 456 (458)
+++ .+.+...+++....+..
T Consensus 299 ly~~~~a~G~g~~Dfs~V~~~~~~~~~ 325 (327)
T KOG0409|consen 299 LYKSMKALGYGDKDFSAVYRAFRRLNG 325 (327)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHhcc
Confidence 773 45666667766655443
No 17
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=9e-27 Score=233.20 Aligned_cols=283 Identities=16% Similarity=0.114 Sum_probs=197.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCC-CCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQ-KLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~-~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.|||+|||+|+||+.+|.+|+++| ++|++++|+.+++++++++ |+........ .++ +.. .+.+ ....+|+||
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~--~~~-~~~~-~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA--IPA-ETAD-AAEPIHRLL 75 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEeeCCcceeec--cCC-CCcc-cccccCEEE
Confidence 479999999999999999999999 9999999998889999864 4422111111 111 111 1222 246789999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CCEE-----EEECcccHHHHhccCCeE
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFI-----ALSGPSFALELMNKLPTA 278 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~-~~~~-----vl~gP~~a~ei~~g~~t~ 278 (458)
+|||++++.++++.+.+++.+++.||++|||++.+ +.+.+.++... .... ...+|+...+.+.+ .
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g---~ 146 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHG---F 146 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceE---E
Confidence 99999999999999999999999999999999975 33444444321 1111 12245444322211 2
Q ss_pred EEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHHHHHHc
Q 012720 279 MVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM-AALVAQGCSEIRWLATKM 357 (458)
Q Consensus 279 v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~-~al~~~~l~E~~~la~a~ 357 (458)
+.++..+.+..+++.++|...|+++..++|+....|.|++.|...++.+.....+.+.-.. ..++...+.|+.+++++.
T Consensus 147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~ 226 (305)
T PRK05708 147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC 226 (305)
T ss_pred EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence 3455444556788999999999999999999999999999998666656555554442110 156789999999999999
Q ss_pred CCCccc--cccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHH
Q 012720 358 GAKPAT--ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV 434 (458)
Q Consensus 358 Gi~~~~--~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v 434 (458)
|+.... +.+. ....+... ..+ .+|-+|+.+||++| + | ..+|+++++|+++|+++|+++++
T Consensus 227 G~~~~~~~~~~~-----~~~~~~~~-~~~~sSM~qD~~~gR~tE-i--------d--~i~G~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 227 GQPAAAANLHEE-----VQRVIQAT-AANYSSMYQDVRAGRRTE-I--------S--YLLGYACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CCCccHHHHHHH-----HHHHHHhc-cCCCcHHHHHHHcCCcee-e--------h--hhhhHHHHHHHHcCCCCchHHHH
Confidence 987331 1110 00001111 122 25677888888775 2 2 56799999999999999999999
Q ss_pred HHHHhcC
Q 012720 435 ARIIDNE 441 (458)
Q Consensus 435 ~~ll~~~ 441 (458)
|++++..
T Consensus 290 ~~~v~~~ 296 (305)
T PRK05708 290 QQRLVAH 296 (305)
T ss_pred HHHHHHH
Confidence 9998653
No 18
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.94 E-value=1.5e-25 Score=223.55 Aligned_cols=272 Identities=14% Similarity=0.163 Sum_probs=194.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
+||+|||+|.||..||..|+++| ++|++|+|++++++.+.+.|. ..+.++.++++++|+||+|+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G--~~V~v~d~~~~~~~~~~~~g~--------------~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG--HQLQVFDVNPQAVDALVDKGA--------------TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEEec
Confidence 58999999999999999999999 999999999999988877542 24457788889999999999
Q ss_pred ccc-cHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 208 PVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 208 p~~-~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
|+. .+++++. ++.+.+++++++|++++ +.+.+.+.+.+.+.+. |. .++.+|...........+..++.+
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~lvid~sT-~~p~~~~~l~~~l~~~-g~-----~~ldapV~g~~~~a~~g~l~~~~g 138 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDALVIDMST-IHPLQTDKLIADMQAK-GF-----SMMDVPVGRTSDNAITGTLLLLAG 138 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----cEEEccCCCCHHHHHhCcEEEEEC
Confidence 986 5888874 45667888999999994 6666666666666543 32 355666544322222233445677
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~ 363 (458)
++++.+++++++|+..+.++++.++. |.+..+|+.+|.+......++.|+..++++.|++++.
T Consensus 139 g~~~~~~~~~p~l~~~g~~~~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~ 201 (296)
T PRK15461 139 GTAEQVERATPILMAMGNELINAGGP-----------------GMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDV 201 (296)
T ss_pred CCHHHHHHHHHHHHHHcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999988888877764 4445567777877777788999999999999999988
Q ss_pred ccccc--CCcc-hhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh-
Q 012720 364 ITGLS--GTGD-IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID- 439 (458)
Q Consensus 364 ~~~~~--g~gd-~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~- 439 (458)
++++. +.+. ....... ..+-...++..+++++ ...||+++++++|+++|+++|+.+.+.+++.
T Consensus 202 ~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~----------~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 202 ALKVMSGTAAGKGHFTTTW---PNKVLKGDLSPAFMID----------LAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred HHHHHhcCcccChHHHccc---cchhccCCCCCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 87652 1111 1100000 0000001122223332 2459999999999999999999999998883
Q ss_pred ------cCCCHHHHHHHHh
Q 012720 440 ------NELTPKKAVLELM 452 (458)
Q Consensus 440 ------~~~~~~~~~~~l~ 452 (458)
...+...+++.+.
T Consensus 269 a~~~g~g~~d~~~~~~~~~ 287 (296)
T PRK15461 269 ARAAGRGRQDWSAILEQVR 287 (296)
T ss_pred HHhcCCCCCChHHHHHHHH
Confidence 3556666666554
No 19
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.94 E-value=4e-25 Score=219.84 Aligned_cols=271 Identities=17% Similarity=0.189 Sum_probs=192.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
|||+|||+|+||.+||.+|.++| ++|++|+|++. .+.+.+.| +....++.++++++|+||+||
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G--~~v~v~~~~~~-~~~~~~~g--------------~~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG--HQLHVTTIGPV-ADELLSLG--------------AVSVETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--CeEEEEeCCHh-HHHHHHcC--------------CeecCCHHHHHhcCCEEEEeC
Confidence 58999999999999999999999 99999999874 55665433 234457888889999999999
Q ss_pred ccc-cHHHHHHh---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 208 PVQ-FSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 208 p~~-~v~~vl~~---i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
|.. ++++++.+ +.+.+.++++||+++ ++.+++.+.+.+.+.+. |. .++.+|...........+..++.+
T Consensus 64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~s-T~~p~~~~~~~~~~~~~-G~-----~~vdaPVsGg~~~a~~g~l~~~~g 136 (292)
T PRK15059 64 PDTPQVEEVLFGENGCTKASLKGKTIVDMS-SISPIETKRFARQVNEL-GG-----DYLDAPVSGGEIGAREGTLSIMVG 136 (292)
T ss_pred CChHHHHHHHcCCcchhccCCCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----CEEEecCCCCHHHHhcCcEEEEEc
Confidence 975 68888743 566677899999998 68887777777776654 43 245555554433322333445667
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~ 363 (458)
++++.+++++++|+..+.++++.++. |.+..+|+.+|.+......++.|++.++++.|+++++
T Consensus 137 G~~~~~~~~~p~l~~~g~~~~~~G~~-----------------G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~ 199 (292)
T PRK15059 137 GDEAVFERVKPLFELLGKNITLVGGN-----------------GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVR 199 (292)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999988877776663 4445566777787777788999999999999999998
Q ss_pred ccccc--CCcch-hhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh-
Q 012720 364 ITGLS--GTGDI-MLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID- 439 (458)
Q Consensus 364 ~~~~~--g~gd~-~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~- 439 (458)
++++. +.+.. +..... .+....++..+++++ ...||+++++++|++.|+++|+.+.+.+++.
T Consensus 200 ~~~~l~~~~~~s~~~~~~~----~~~~~~~~~~~f~l~----------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 265 (292)
T PRK15059 200 VRQALMGGFASSRILEVHG----ERMIKRTFNPGFKIA----------LHQKDLNLALQSAKALALNLPNTATCQELFNT 265 (292)
T ss_pred HHHHHHcCcccCHHHHhhc----hhhhcCCCCCCCchH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 87652 11111 100000 000011122233333 2459999999999999999999999988883
Q ss_pred ------cCCCHHHHHHHHhc
Q 012720 440 ------NELTPKKAVLELMS 453 (458)
Q Consensus 440 ------~~~~~~~~~~~l~~ 453 (458)
.+++...+++.+..
T Consensus 266 a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 266 CAANGGSQLDHSALVQALEL 285 (292)
T ss_pred HHhcCCCcCChHHHHHHHHH
Confidence 35556666665544
No 20
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.93 E-value=2.9e-25 Score=201.35 Aligned_cols=156 Identities=42% Similarity=0.605 Sum_probs=138.4
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (458)
||+|||+|+||+++|..|+++| ++|++|.|+++.++.+++.+.+..|+++..++.++.+++|++++++++|+||++||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 7999999999999999999999 99999999999999999999888999999999999999999999999999999999
Q ss_pred cccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHH
Q 012720 209 VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288 (458)
Q Consensus 209 ~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~ 288 (458)
++.++++++++.+++++++++|.+++|+..++...+++++++.++.. .+.++.||+++.|++.+.++.+++++.+.+.
T Consensus 79 s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~ 156 (157)
T PF01210_consen 79 SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEEV 156 (157)
T ss_dssp GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence 99999999999999999999999999998888889999999988863 3899999999999999999999999988764
No 21
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.93 E-value=2.2e-24 Score=213.80 Aligned_cols=277 Identities=16% Similarity=0.142 Sum_probs=196.2
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHH
Q 012720 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHAMPVQFSSSF 215 (458)
Q Consensus 137 ~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~v 215 (458)
+||+.+|..|+++| ++|++++|+ ++.+.+++.|+......+ .... .+.+++++++ ...+|+||+|||+.+++++
T Consensus 1 aiG~~~a~~L~~~G--~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~ 75 (293)
T TIGR00745 1 AVGSLYGAYLARAG--HDVTLLARG-EQLEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVIITVKAYQTEEA 75 (293)
T ss_pred CchHHHHHHHHhCC--CcEEEEecH-HHHHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEEEeccchhHHHH
Confidence 58999999999999 999999997 678889888865432222 1111 2345556666 6789999999999999999
Q ss_pred HHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCEEEEECcccHHHHhccCCeEEEEccCC--HH
Q 012720 216 LEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMVVASKD--RK 287 (458)
Q Consensus 216 l~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~------~~~~vl~gP~~a~ei~~g~~t~v~i~g~d--~e 287 (458)
++.+.+++.++++||+++||++.. +.+.+.++... ...+...+|+...+.+.+. +.++..+ .+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~~------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~---~~iG~~~~~~~ 146 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGHE------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGA---TKIGDYVGENE 146 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCCH------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEecccc---EEEecCCCchH
Confidence 999999999999999999999874 33444443211 0112345666544333222 3344332 25
Q ss_pred HHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC---Cc-HHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---NN-SMAALVAQGCSEIRWLATKMGAKPAT 363 (458)
Q Consensus 288 ~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~---~n-~~~al~~~~l~E~~~la~a~Gi~~~~ 363 (458)
..+.+.++|+..++++...+|+....|.|++.|+..++.+......++ .+ ....++..++.|+.+++++.|+++..
T Consensus 147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 226 (293)
T TIGR00745 147 AVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD 226 (293)
T ss_pred HHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 678899999999999999999999999999999755444444444333 33 36699999999999999999988543
Q ss_pred cccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCC
Q 012720 364 ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNEL 442 (458)
Q Consensus 364 ~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~ 442 (458)
..- .+.+.........+ .+|-+|+.+|+++| + ....|+++++|+++|+++|.++.+|++++..+
T Consensus 227 ~~~----~~~~~~~~~~~~~~~sSm~~D~~~gr~tE-i----------d~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 227 DEV----EELVRAVIRMTAENTSSMLQDLLRGRRTE-I----------DAINGAVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred HHH----HHHHHHHHhcCCCCCChHHHHHHcCCcch-H----------HHhccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 210 01111111111223 25667888887765 3 36679999999999999999999999997654
No 22
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.93 E-value=2.3e-24 Score=214.09 Aligned_cols=269 Identities=16% Similarity=0.163 Sum_probs=194.0
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-c
Q 012720 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-Q 210 (458)
Q Consensus 132 IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~ 210 (458)
|||+|.||.+||.+|+++| ++|++|+|++++++.+.+.| +..++++.++++++|+||+|||. .
T Consensus 1 ~IGlG~mG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG--HPVRVFDLFPDAVEEAVAAG--------------AQAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred CCcccHhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEeCCChH
Confidence 6899999999999999999 99999999999998888754 23456888889999999999997 6
Q ss_pred cHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012720 211 FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK 287 (458)
Q Consensus 211 ~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e 287 (458)
++++++ +++.+.+++++++|+++ ++.+++.+.+.+.+.+. |. .++.+|...........+..++.+++++
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~-g~-----~~vdaPv~Gg~~~a~~g~l~~~~gg~~~ 137 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAH-GA-----VFMDAPVSGGVGGARAGTLTFMVGGVAE 137 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----cEEECCCCCCHHHHhhCcEEEEECCCHH
Confidence 688888 67888888999999999 89988777777777653 42 3566666554333333344566677889
Q ss_pred HHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccc
Q 012720 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367 (458)
Q Consensus 288 ~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~ 367 (458)
.+++++++|+..+.++.+.++. |....+|+.+|.+......++.|+..++++.|++++.+.++
T Consensus 138 ~~~~~~~~l~~~g~~~~~~g~~-----------------g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~ 200 (288)
T TIGR01692 138 EFAAAEPVLGPMGRNIVHCGDH-----------------GAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEI 200 (288)
T ss_pred HHHHHHHHHHHhcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988877776653 33444667777777777889999999999999999988765
Q ss_pred c--CCcch-hhhhccCCCcc---chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh--
Q 012720 368 S--GTGDI-MLTCFVNLSRN---RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-- 439 (458)
Q Consensus 368 ~--g~gd~-~~t~~~~~srn---~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~-- 439 (458)
. +.+.. .........+- .....++..+++.+ ...||++++.++|++.|+++|+.+.+.+++.
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 201 ANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTA----------LMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred HhcCCccCcHHHHhCCCccccccccccCCCCCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 2 11211 11100000000 00001111222332 3459999999999999999999999998884
Q ss_pred -----cCCCHHHHHHH
Q 012720 440 -----NELTPKKAVLE 450 (458)
Q Consensus 440 -----~~~~~~~~~~~ 450 (458)
++++...+++.
T Consensus 271 ~~~g~g~~d~~~~~~~ 286 (288)
T TIGR01692 271 DDKGHGGKDFSSVIQL 286 (288)
T ss_pred HhcCCCCCChHHHHHH
Confidence 34455555543
No 23
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.92 E-value=1e-23 Score=210.03 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=190.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
+|||+|||+|.||..+|..|++.| ++|++|+|+++..+.+.+.| +..+++++++++++|+||+|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVYDRNPEAVAEVIAAG--------------AETASTAKAVAEQCDVIITM 65 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEEe
Confidence 579999999999999999999999 99999999998888877654 23456788888999999999
Q ss_pred Ccc-ccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 207 Vp~-~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
+|. ..++.++ .++.+.++++++|++++ ++.+.+.+.+.+.+.+. | ..++..|.+..+.........++.
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~s-t~~~~~~~~l~~~~~~~-g-----~~~~d~pv~g~~~~a~~g~l~i~~ 138 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMS-SIAPLASREIAAALKAK-G-----IEMLDAPVSGGEPKAIDGTLSVMV 138 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCcEEEECC-CCCHHHHHHHHHHHHHc-C-----CcEEEcCCCCCHHHHhhCcEEEEE
Confidence 995 5577776 44677788999999988 45665555555555442 3 235566655432211122233445
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~ 362 (458)
+++++.++++.++|+..+.++.+.++.. .+..+|+.+|.+......+++|+..++++.|++++
T Consensus 139 gg~~~~~~~~~~~l~~~~~~~~~~g~~g-----------------~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 201 (296)
T PRK11559 139 GGDKAIFDKYYDLMKAMAGSVVHTGDIG-----------------AGNVTKLANQVIVALNIAAMSEALVLATKAGVNPD 201 (296)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEeCCcC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 5678999999999999888777665542 22334556666667777899999999999999998
Q ss_pred cccccc--CCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHH--
Q 012720 363 TITGLS--GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARII-- 438 (458)
Q Consensus 363 ~~~~~~--g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll-- 438 (458)
.+.+.. +.+... ...... .+.+..++..|++.+. ..||+++++++|+++|+++|+.+.+++++
T Consensus 202 ~~~~~l~~~~~~s~--~~~~~~-~~~~~~d~~~~f~~~~----------~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK11559 202 LVYQAIRGGLAGST--VLDAKA-PMVMDRNFKPGFRIDL----------HIKDLANALDTSHGVGAPLPLTAAVMEMMQA 268 (296)
T ss_pred HHHHHHhcCcccCH--HHHhhc-hHhhcCCCCCCcchHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 776542 111100 000000 0011122333444432 24899999999999999999999999888
Q ss_pred -----hcCCCHHHHHHHHhcC
Q 012720 439 -----DNELTPKKAVLELMSL 454 (458)
Q Consensus 439 -----~~~~~~~~~~~~l~~~ 454 (458)
....+...+++.+..+
T Consensus 269 ~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 269 LKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHhcCCCcCCcHHHHHHHHHh
Confidence 3456677777665443
No 24
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.92 E-value=4.9e-23 Score=214.46 Aligned_cols=282 Identities=21% Similarity=0.209 Sum_probs=204.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a 200 (458)
|||+|||+|.||..+|..|+++| |+|++||+++++++.+++ |..+.+.++.. + ...+.++++++++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~a 77 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEKVDKLNK-GKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDA 77 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHHHHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhC
Confidence 58999999999999999999999 999999999999998875 44444444322 1 12367788888888999
Q ss_pred CEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHH-HHHHHhCCC-CCCEEEEECcccH
Q 012720 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ-IIPQALRNP-RQPFIALSGPSFA 268 (458)
Q Consensus 201 DiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e-~l~~~lg~~-~~~~~vl~gP~~a 268 (458)
|+||+|||+. ++.++++++.+.++++++||..+ ++.+++.+.+.+ .+++..|.. ...+.+.++|.++
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~ 156 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence 9999999965 37888888988899999999887 898887766654 333322321 2456789999887
Q ss_pred HHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCC-CeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012720 269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (458)
Q Consensus 269 ~ei~~----g~~t~v~i~g~d~e~~e~l~~lL~~~g-~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~ 343 (458)
.+... ..+..++.+ .+++.+++++++|+..+ ..+++..++..++..|++.| .+.++.
T Consensus 157 ~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N-----------------~~~a~~ 218 (411)
T TIGR03026 157 REGNAVHDLLNPDRIVGG-ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN-----------------TFRAVK 218 (411)
T ss_pred CCCChhhhhcCCCEEEEe-CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH-----------------HHHHHH
Confidence 64321 223344444 68999999999999876 46677778777666665555 445666
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHH
Q 012720 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423 (458)
Q Consensus 344 ~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~ 423 (458)
...++|+..+|+++|+|++++.+..+....+ ..+.+..|+-++ |.+. .||++++++.|++
T Consensus 219 ia~~nE~~~la~~~GiD~~~v~~~~~~~~~i------~~~~~~pg~g~g-g~c~-------------~KD~~~l~~~a~~ 278 (411)
T TIGR03026 219 IAFANELARICEALGIDVYEVIEAAGTDPRI------GFNFLNPGPGVG-GHCI-------------PKDPLALIYKAKE 278 (411)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCCCC------CCCcCCCCCCCC-CCch-------------hhhHHHHHHHHHh
Confidence 7789999999999999999887754332111 011222222111 1121 3899999999999
Q ss_pred cCCCCcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720 424 YNVKMPVLTAVARIIDNELTPKKAVLELMS 453 (458)
Q Consensus 424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (458)
+|+++|+.+++.++ +...+.-+++.+.+
T Consensus 279 ~g~~~~l~~~~~~~--N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 279 LGYNPELIEAAREI--NDSQPDYVVEKILD 306 (411)
T ss_pred cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 99999999999888 66677777766654
No 25
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.91 E-value=3.2e-23 Score=206.17 Aligned_cols=271 Identities=17% Similarity=0.208 Sum_probs=190.4
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (458)
||+|||+|.||..||.+|+++| ++|++|+|++++++.+.+.|. ...++++++++++|+||+|+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG--YQLHVTTIGPEVADELLAAGA--------------VTAETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------cccCCHHHHHhcCCEEEEecC
Confidence 5999999999999999999999 999999999999888876542 233477788899999999999
Q ss_pred cc-cHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720 209 VQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (458)
Q Consensus 209 ~~-~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~ 284 (458)
.. .++.++ ..+.+.++++++||+++ ++.+.+.+.+.+.+.+. | ..++.+|.+..+......+..++.++
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~g~iivd~s-t~~~~~~~~l~~~l~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~gg 137 (291)
T TIGR01505 65 DSPQVEEVAFGENGIIEGAKPGKTLVDMS-SISPIESKRFAKAVKEK-G-----IDYLDAPVSGGEIGAIEGTLSIMVGG 137 (291)
T ss_pred CHHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-C-----CCEEecCCCCCHHHHhcCCEEEEecC
Confidence 74 577776 34667778899999988 45565555555555543 3 23566676654332222223345566
Q ss_pred CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012720 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (458)
Q Consensus 285 d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~ 364 (458)
+++.+++++++|+..+.++++.+... .+..+|+.+|.+......+++|+..++++.|++++++
T Consensus 138 ~~~~~~~~~~ll~~lg~~~~~~g~~g-----------------~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~ 200 (291)
T TIGR01505 138 DQAVFDRVKPLFEALGKNIVLVGGNG-----------------DGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRV 200 (291)
T ss_pred CHHHHHHHHHHHHHhcCCeEEeCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 88999999999999988777665532 2233456667777788889999999999999999988
Q ss_pred cccc--CCcchh-hhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh--
Q 012720 365 TGLS--GTGDIM-LTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-- 439 (458)
Q Consensus 365 ~~~~--g~gd~~-~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~-- 439 (458)
.+.. +.+... ..... .+..+.++..+++.. ...||++++++++++.|+++|+.+.+.+++.
T Consensus 201 ~~~l~~~~~~s~~~~~~~----~~~~~~~~~~~f~~~----------~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 201 RQALRGGLAGSTVLEVKG----ERVIDRTFKPGFRID----------LHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred HHHHhcCcccCHHHHhhC----hhhhcCCCCCCcchH----------HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 7642 111100 00000 000111122233332 2359999999999999999999999988884
Q ss_pred -----cCCCHHHHHHHHhc
Q 012720 440 -----NELTPKKAVLELMS 453 (458)
Q Consensus 440 -----~~~~~~~~~~~l~~ 453 (458)
.+++...+++.+..
T Consensus 267 ~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 267 RANGGGQLDHSALVQALEL 285 (291)
T ss_pred HhcCCCccChHHHHHHHHH
Confidence 36777777776644
No 26
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.91 E-value=9.7e-23 Score=203.56 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=183.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CCEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi 204 (458)
|||+|||+|.||..||.+|.++| ++|++|||++++++.+.+.| +..+.++++++++ +|+||
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~s~~~~~~~~~~advVi 64 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG--HEVVGYDVNQEAVDVAGKLG--------------ITARHSLEELVSKLEAPRTIW 64 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHHhCCCCCEEE
Confidence 58999999999999999999999 99999999999888887644 2345677777655 69999
Q ss_pred EcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 205 laVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
+|+|.. .++++++++.+.++++++||+++ ++.+.+...+.+.+.+. | +.++.+|..+......... .++.+
T Consensus 65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~s-t~~~~~~~~~~~~~~~~-g-----~~~vdapV~G~~~~a~~g~-~~~~g 136 (299)
T PRK12490 65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGG-NSRYKDDLRRAEELAER-G-----IHYVDCGTSGGVWGLRNGY-CLMVG 136 (299)
T ss_pred EEecCchHHHHHHHHHhccCCCCCEEEECC-CCCchhHHHHHHHHHHc-C-----CeEEeCCCCCCHHHHhcCC-eEEec
Confidence 999986 89999999988898999999998 46665555555555443 3 3456666665433222223 35566
Q ss_pred CCHHHHHHHHHHHhcCCC---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--
Q 012720 284 KDRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG-- 358 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~---~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~G-- 358 (458)
++++.+++++++|+..+. ++++.+++ |.+..+|+.+|.+......++.|+..++++.|
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ 199 (299)
T PRK12490 137 GDKEIYDRLEPVFKALAPEGPGYVHAGPV-----------------GSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFD 199 (299)
T ss_pred CCHHHHHHHHHHHHHhcCcCCcEEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 789999999999998876 56666653 45566678888888889999999999999999
Q ss_pred CCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHH---HHHHHHHHHcCCCCcHHHHHH
Q 012720 359 AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTA---GAVIALAQKYNVKMPVLTAVA 435 (458)
Q Consensus 359 i~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~---g~v~~lA~~~gv~~P~~~~v~ 435 (458)
+|++.++++...+.... +..... ....+..+.... ......||. +++++.|++.|+++|+...+.
T Consensus 200 ld~~~~~~~~~~~~~~~---s~~l~~--~~~~~~~~~~~~-------~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~ 267 (299)
T PRK12490 200 FDVEDVARLWRNGSVIR---SWLLDL--TVKALAEDPKLA-------GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASL 267 (299)
T ss_pred CCHHHHHHHHcCCcHHH---HHHHHH--HHHHHhhCCChh-------hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99888876521110000 000000 111222221110 012345776 799999999999999999884
Q ss_pred -HHH
Q 012720 436 -RII 438 (458)
Q Consensus 436 -~ll 438 (458)
.++
T Consensus 268 ~~~~ 271 (299)
T PRK12490 268 FMRF 271 (299)
T ss_pred HHHH
Confidence 444
No 27
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=99.90 E-value=1e-23 Score=188.69 Aligned_cols=145 Identities=48% Similarity=0.776 Sum_probs=132.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc-ccccccCCcchhhhhccCCCccc
Q 012720 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA-TITGLSGTGDIMLTCFVNLSRNR 385 (458)
Q Consensus 307 ~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~-~~~~~~g~gd~~~t~~~~~srn~ 385 (458)
+|+.|+|+++++||++|+++|+.++++++.|...+++.+++.|+.++++++|.+++ ++++++|+||+++||++..+||+
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~ 80 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR 80 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHhhCC-CChHHHHhhc--cccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012720 386 TVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLEL 451 (458)
Q Consensus 386 ~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l 451 (458)
++|..+.+| .+.+++.+++ ++++||...++.+.++++++++++|+++++|+++.++.+|++++++|
T Consensus 81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~~~~~~~~i~~l 149 (149)
T PF07479_consen 81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYENESPEEAIEEL 149 (149)
T ss_dssp HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcCcCCHHHHHHcC
Confidence 999999999 8998888887 89999999999999999999999999999999999999999999876
No 28
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.90 E-value=7.7e-23 Score=215.11 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=185.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiV 203 (458)
+++|+|||+|.||..||.+|+++| ++|++|||++++++.+.+.+... +. ..+..+.+++|+++. +|+|
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G--~~V~V~NRt~~k~~~l~~~~~~~----Ga---~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE----GN---LPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhhhc----CC---cccccCCCHHHHHhcCCCCCEE
Confidence 568999999999999999999999 99999999999999887641100 00 012345678887765 9999
Q ss_pred EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
|+|||. .++++++.++.+.+.+|++||++++ +.+.+.+...+.+.+. | +.++..|..+.+.+..... .++.
T Consensus 77 i~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~-G-----i~fldapVSGG~~gA~~G~-~im~ 148 (493)
T PLN02350 77 IILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEK-G-----LLYLGMGVSGGEEGARNGP-SLMP 148 (493)
T ss_pred EEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCcCCHHHhcCCC-eEEe
Confidence 999996 5799999999999999999999995 5555455555555543 4 3466666665443322223 3566
Q ss_pred cCCHHHHHHHHHHHhcCCCe------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH
Q 012720 283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK 356 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a 356 (458)
|++++.+++++++|+..+-+ +.+.++. |.+..+|+.+|.+.....++++|++.++++
T Consensus 149 GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~ 211 (493)
T PLN02350 149 GGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGIEYGDMQLISEAYDVLKS 211 (493)
T ss_pred cCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999999999987643 5555553 455667788888888999999999999999
Q ss_pred -cCCCcccccccc-----CCcchhhhhccCCCccchHHHHhh-C-----CCChHHHHhhccccchhhhHHH------HHH
Q 012720 357 -MGAKPATITGLS-----GTGDIMLTCFVNLSRNRTVGVRLG-S-----GEKLDDILSSMNQVAEGVSTAG------AVI 418 (458)
Q Consensus 357 -~Gi~~~~~~~~~-----g~gd~~~t~~~~~srn~~~g~~l~-~-----g~~~e~~~~~~~~~~eg~kd~g------~v~ 418 (458)
.|++++.+.++. +.+.... ... .+..+. + ++.++ ...||++ ..+
T Consensus 212 ~~Gld~~~l~~vf~~~~~g~~~S~l------lei--~~~~l~~~d~~~~~f~l~----------~i~Kd~~~kGTg~w~~ 273 (493)
T PLN02350 212 VGGLSNEELAEVFAEWNKGELESFL------IEI--TADIFSVKDDKGDGYLVD----------KILDKTGMKGTGKWTV 273 (493)
T ss_pred hCCCCHHHHHHHHHHHcCCCccchH------HHH--HHHHHhhcCCCCCCchHH----------HHHhhhcccchHHHHH
Confidence 599988877641 1111100 000 011111 1 12222 2347788 899
Q ss_pred HHHHHcCCCCcH-HHHHHHHHhcC
Q 012720 419 ALAQKYNVKMPV-LTAVARIIDNE 441 (458)
Q Consensus 419 ~lA~~~gv~~P~-~~~v~~ll~~~ 441 (458)
+.|.++|+++|+ .+++.+.+...
T Consensus 274 ~~A~~lgv~~p~i~~av~~r~~s~ 297 (493)
T PLN02350 274 QQAAELSVAAPTIAASLDARYLSG 297 (493)
T ss_pred HHHHHhCCCccHHHHHHHHHHHhc
Confidence 999999999999 77777666443
No 29
>PLN02858 fructose-bisphosphate aldolase
Probab=99.90 E-value=7.6e-23 Score=237.63 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=203.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..+||||||+|.||..||.+|.++| |+|++|||++++++.+.+.| +..++++.|++++||+||+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~G--------------a~~~~s~~e~a~~advVi~ 66 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSG--FKVQAFEISTPLMEKFCELG--------------GHRCDSPAEAAKDAAALVV 66 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEE
Confidence 3578999999999999999999999 99999999999999998765 3456789999999999999
Q ss_pred cCcc-ccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012720 206 AMPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (458)
Q Consensus 206 aVp~-~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i 281 (458)
|+|. .++++++ .++.+.+.+|+++|+++ ++.+++.+.+++.+.+. |. .+.++.+|..+........+..++
T Consensus 67 ~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~S-Ti~p~~~~~la~~l~~~-g~---~~~~lDaPVsGg~~~A~~G~L~im 141 (1378)
T PLN02858 67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRS-TILPLQLQKLEKKLTER-KE---QIFLVDAYVSKGMSDLLNGKLMII 141 (1378)
T ss_pred EcCChHHHHHHHhchhhHHhcCCCcCEEEECC-CCCHHHHHHHHHHHHhc-CC---ceEEEEccCcCCHHHHhcCCeEEE
Confidence 9996 5688887 45777788999999999 78888777777777654 41 134666666654333333445567
Q ss_pred ccCCHHHHHHHHHHHhcCCCeEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720 282 ASKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (458)
Q Consensus 282 ~g~d~e~~e~l~~lL~~~g~~v~~-~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~ 360 (458)
.|++++.+++++++|+..+.++++ .++. |.+..+|+.+|.+......++.|++.+|++.|++
T Consensus 142 vGG~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld 204 (1378)
T PLN02858 142 ASGRSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLVASAEAMALGVRAGIH 204 (1378)
T ss_pred EcCCHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 788999999999999998877764 3543 5556677888888888899999999999999999
Q ss_pred cccccccc--CCcch-hhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720 361 PATITGLS--GTGDI-MLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (458)
Q Consensus 361 ~~~~~~~~--g~gd~-~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l 437 (458)
++.++++. +.+.. +.....+ +....++..+++++ ...||+++++++|++.|+++|+.+.++++
T Consensus 205 ~~~l~~vl~~s~g~s~~~~~~~~----~~~~~d~~~~F~l~----------l~~KDl~la~~~A~~~g~~lpl~~~a~~~ 270 (1378)
T PLN02858 205 PWIIYDIISNAAGSSWIFKNHVP----LLLKDDYIEGRFLN----------VLVQNLGIVLDMAKSLPFPLPLLAVAHQQ 270 (1378)
T ss_pred HHHHHHHHhcCCccCHHHHhhhh----HhhcCCCCCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 99988752 22221 1100000 00001111223332 24599999999999999999999999988
Q ss_pred Hhc-------CCCHHHHHHHH
Q 012720 438 IDN-------ELTPKKAVLEL 451 (458)
Q Consensus 438 l~~-------~~~~~~~~~~l 451 (458)
+.. ..+...+++.+
T Consensus 271 ~~~a~~~G~g~~D~sav~~~~ 291 (1378)
T PLN02858 271 LISGSSSMQGDDTATSLAKVW 291 (1378)
T ss_pred HHHHHhcCCCccChHHHHHHH
Confidence 843 44555555544
No 30
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.89 E-value=1.4e-21 Score=195.39 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=185.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CCEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi 204 (458)
|||+|||+|.||..||.+|+++| ++|++|||++++++.+.+.| +..+++++++++. +|+||
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~~~~~dvvi 64 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG--HEVVGYDRNPEAVEALAEEG--------------ATGADSLEELVAKLPAPRVVW 64 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHhhcCCCCEEE
Confidence 58999999999999999999999 99999999999988887654 3455677776654 69999
Q ss_pred EcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 205 laVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
+|+|.. ++++++.++.+.+++++++|++++ ..+.+.+.+.+.+.+. | +.++..|..+......... .++.+
T Consensus 65 ~~v~~~~~~~~v~~~l~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~-g-----~~~~dapvsG~~~~a~~g~-~~~~g 136 (301)
T PRK09599 65 LMVPAGEITDATIDELAPLLSPGDIVIDGGN-SYYKDDIRRAELLAEK-G-----IHFVDVGTSGGVWGLERGY-CLMIG 136 (301)
T ss_pred EEecCCcHHHHHHHHHHhhCCCCCEEEeCCC-CChhHHHHHHHHHHHc-C-----CEEEeCCCCcCHHHHhcCC-eEEec
Confidence 999986 789999999888999999999985 4444444555555443 3 3455666655432221222 34566
Q ss_pred CCHHHHHHHHHHHhcCCC----eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH--c
Q 012720 284 KDRKLANAVQQLLASKHL----RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK--M 357 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~----~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a--~ 357 (458)
++++.+++++++|+..+- ++.+.+++ |.+..+|+.+|.+......++.|+..++++ .
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-----------------G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~ 199 (301)
T PRK09599 137 GDKEAVERLEPIFKALAPRAEDGYLHAGPV-----------------GAGHFVKMVHNGIEYGMMQAYAEGFELLEASRF 199 (301)
T ss_pred CCHHHHHHHHHHHHHHcccccCCeEeECCC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 789999999999998876 66776664 344455667777777888999999999999 9
Q ss_pred CCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHH-HHH
Q 012720 358 GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA-VAR 436 (458)
Q Consensus 358 Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~-v~~ 436 (458)
|+|+++++++...+... .+.... .....+.+......+.. ...+ .+|.+.+++.|.+.|+++|.+.. ++.
T Consensus 200 gld~~~~~~~~~~~~~~---~s~~l~--~~~~~~~~~~~~~~~~~---~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~ 270 (301)
T PRK09599 200 DLDLAAVAEVWRRGSVI---RSWLLD--LTADALAEDPKLDEISG---YVED-SGEGRWTVEEAIDLAVPAPVIAAALFM 270 (301)
T ss_pred CCCHHHHHHHHhCCcHH---HHHHHH--HHHHHHhcCCCHHHHHH---HHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99998887642111000 000000 01122221111111100 0111 35568999999999999999998 444
Q ss_pred HH---hcCCCHHHHHHHHh
Q 012720 437 II---DNELTPKKAVLELM 452 (458)
Q Consensus 437 ll---~~~~~~~~~~~~l~ 452 (458)
.+ .....+...+..++
T Consensus 271 ~~~~~~~~~~~~~~~~a~~ 289 (301)
T PRK09599 271 RFRSRQEDSFADKVVAALR 289 (301)
T ss_pred HHHhccCCCcHHHHHHHHH
Confidence 23 23344444444443
No 31
>PLN02858 fructose-bisphosphate aldolase
Probab=99.88 E-value=1.2e-21 Score=227.57 Aligned_cols=274 Identities=12% Similarity=0.119 Sum_probs=198.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
+++|+|||+|+||.+||.+|+++| ++|++|||++++++.+.+.|. ....++.++++++|+||+|
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN--FSVCGYDVYKPTLVRFENAGG--------------LAGNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEe
Confidence 468999999999999999999999 999999999999888877542 2346888888999999999
Q ss_pred Cc-cccHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 207 MP-VQFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 207 Vp-~~~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
|| +.++++++. ++.+.+.+|+++|+++ ++.+++.+.+.+.+.+. + ..+.++.+|..+........+..++.
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~S-TvsP~~~~~la~~l~~~-g---~g~~~lDAPVsGg~~~A~~G~L~imv 462 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSS-TVSPGFVIQLERRLENE-G---RDIKLVDAPVSGGVKRAAMGTLTIMA 462 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECC-CCCHHHHHHHHHHHHhh-C---CCcEEEEccCCCChhhhhcCCceEEE
Confidence 99 567888873 4667788899999998 68888777777776653 2 12456777766543333333444566
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720 283 SKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~v~~-~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~ 361 (458)
+++++.+++++++|+..+.++++ .+++ |.+..+|+.+|.+......+++|++.++++.|+++
T Consensus 463 gG~~~~~~~~~plL~~lg~~i~~~~g~~-----------------G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~ 525 (1378)
T PLN02858 463 SGTDEALKSAGSVLSALSEKLYVIKGGC-----------------GAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNT 525 (1378)
T ss_pred ECCHHHHHHHHHHHHHHhCcEEEeCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 67899999999999998877765 4454 44555677778888888899999999999999999
Q ss_pred ccccccc--CCcchh-hhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 012720 362 ATITGLS--GTGDIM-LTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARII 438 (458)
Q Consensus 362 ~~~~~~~--g~gd~~-~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll 438 (458)
+.++++. +.+... .....+ +....++..+++++ ...||++++++++++.|+++|+.+.+.+++
T Consensus 526 ~~l~evl~~s~g~s~~~~~~~~----~~l~~d~~~~f~l~----------l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~ 591 (1378)
T PLN02858 526 RKLFDIISNAGGTSWMFENRVP----HMLDNDYTPYSALD----------IFVKDLGIVSREGSSRKIPLHLSTVAHQLF 591 (1378)
T ss_pred HHHHHHHHhhcccChhhhhccc----hhhcCCCCCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 9888752 222111 000000 00001111123332 245999999999999999999999998888
Q ss_pred h-------cCCCHHHHHHHHh
Q 012720 439 D-------NELTPKKAVLELM 452 (458)
Q Consensus 439 ~-------~~~~~~~~~~~l~ 452 (458)
. .+.+...+++.+.
T Consensus 592 ~~a~~~G~g~~D~sav~~~~~ 612 (1378)
T PLN02858 592 LAGSASGWGRIDDAAVVKVYE 612 (1378)
T ss_pred HHHHhcCCCccChHHHHHHHH
Confidence 3 3455555655443
No 32
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.85 E-value=1.1e-19 Score=181.35 Aligned_cols=273 Identities=10% Similarity=0.078 Sum_probs=179.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---hcCCCCEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL 204 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a~~~aDiVi 204 (458)
|||+|||+|.||..||.+|+++| ++|.+|+|++++++.+.+.+.. ...++++ .+..+|+||
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~~~~~dvIi 64 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKEDRTT--------------GVANLRELSQRLSAPRVVW 64 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCc--------------ccCCHHHHHhhcCCCCEEE
Confidence 58999999999999999999999 9999999999999998876532 1224443 346789999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~ 284 (458)
+|||+..++++++++.+.++++++||+++++...++ ....+.+.+. | +.++..|..+...+..... .++.++
T Consensus 65 ~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t-~~~~~~~~~~-g-----~~~vda~vsGg~~~a~~G~-~~~~gG 136 (298)
T TIGR00872 65 VMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDS-LRRYKLLKEK-G-----IHLLDCGTSGGVWGRERGY-CFMIGG 136 (298)
T ss_pred EEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCC-eeeeCC
Confidence 999988999999999999999999999997655443 3333344332 3 2355555544322221222 345666
Q ss_pred CHHHHHHHHHHHhcCCC---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--C
Q 012720 285 DRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG--A 359 (458)
Q Consensus 285 d~e~~e~l~~lL~~~g~---~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~G--i 359 (458)
+++.+++++++|+..+- .+.+.++. |....+|+.+|.+......+++|+..++++.| +
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l 199 (298)
T TIGR00872 137 DGEAFARAEPLFADVAPEEQGYLYCGPC-----------------GSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF 199 (298)
T ss_pred CHHHHHHHHHHHHHhcCcCCCEEEECCc-----------------cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 89999999999997664 35555553 33344556667777778899999999999984 6
Q ss_pred CccccccccCCcchhhhhccCCCccchH---HHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720 360 KPATITGLSGTGDIMLTCFVNLSRNRTV---GVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436 (458)
Q Consensus 360 ~~~~~~~~~g~gd~~~t~~~~~srn~~~---g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ 436 (458)
+++++.++-..+..+ +.+-+ ...+.++..+..+.. .+...++.+.++..|.+.|+++|.+.....
T Consensus 200 d~~~~~~i~~~g~~~--------~s~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~v~~a~~~g~p~P~~~~al~ 267 (298)
T TIGR00872 200 DIPEVARVWRRGSVI--------RSWLLDLTAIAFRESPDLAEFSG----RVSDSGEGRWTVIAAIDLGVPAPVIATSLQ 267 (298)
T ss_pred CHHHHHHHHcCCchh--------HhHHHHHHHHHHhcCCcHHHHHH----HHHhhccHHHHHHHHHHhCCCHHHHHHHHH
Confidence 887776541111100 11100 111222211222221 111235568899999999999999976432
Q ss_pred -H--HhcC-CCHHHHHHHHhc
Q 012720 437 -I--IDNE-LTPKKAVLELMS 453 (458)
Q Consensus 437 -l--l~~~-~~~~~~~~~l~~ 453 (458)
. ...+ .-|..+++.+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~r~ 288 (298)
T TIGR00872 268 SRFASRDLDDFANKVLAALRK 288 (298)
T ss_pred HHHHhCCCCCcHHHHHHHHHH
Confidence 1 1222 346667766654
No 33
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=2.2e-19 Score=179.87 Aligned_cols=276 Identities=21% Similarity=0.243 Sum_probs=210.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCCC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLGA 200 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~a 200 (458)
|||+|||+|.+|...|..|++.| |+|+.+|.++++++.|++ |.-+.|.|++. ...++++++|.+++++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNK-GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhC-CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence 79999999999999999999999 999999999999999987 66788888753 123489999999999999
Q ss_pred CEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (458)
Q Consensus 201 DiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e 270 (458)
|++|+||++. ++++++++|.++++..++||.=| ++.+++.+.+.+.+.+.... ..+.+.+.|.|-+|
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS-TVPvGt~~~v~~~i~~~~~~--~~f~v~~NPEFLRE 154 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS-TVPVGTTEEVRAKIREENSG--KDFEVASNPEFLRE 154 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC-CCCCCchHHHHHHHHhhccc--CCceEecChHHhcC
Confidence 9999999863 47888899999998766666555 78888887777777665432 25778999998876
Q ss_pred Hh----ccCCeEEEEccCCHHHHHHHHHHHhcC---CCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012720 271 LM----NKLPTAMVVASKDRKLANAVQQLLASK---HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (458)
Q Consensus 271 i~----~g~~t~v~i~g~d~e~~e~l~~lL~~~---g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~ 343 (458)
.. .-.|..+++|..++...+.+++++... ..++.. .|+..+|.- ||..|.+.++-
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~-t~~~~AE~I-----------------KyaaNafLAtK 216 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILF-TDLREAELI-----------------KYAANAFLATK 216 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEE-ecchHHHHH-----------------HHHHHHHHHHH
Confidence 32 135677888887777778888888653 445444 345555543 45667777888
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHH-----hhCCCChHHHHhhccccchhhhHHHHHH
Q 012720 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVR-----LGSGEKLDDILSSMNQVAEGVSTAGAVI 418 (458)
Q Consensus 344 ~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~-----l~~g~~~e~~~~~~~~~~eg~kd~g~v~ 418 (458)
..-++|+..+|++.|+|..++.+..|.-+ +.|.. ++.|.++ + .||+++++
T Consensus 217 IsFiNEia~ice~~g~D~~~V~~gIGlD~-------------RIG~~fl~aG~GyGGsC--f----------PKD~~AL~ 271 (414)
T COG1004 217 ISFINEIANICEKVGADVKQVAEGIGLDP-------------RIGNHFLNAGFGYGGSC--F----------PKDTKALI 271 (414)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCc-------------hhhHhhCCCCCCCCCcC--C----------cHhHHHHH
Confidence 88999999999999999877765333322 22222 1223333 1 48999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHHhcC
Q 012720 419 ALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454 (458)
Q Consensus 419 ~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~ 454 (458)
..|+++|.+.++++++.+. +..+++.+++.+.++
T Consensus 272 ~~a~~~~~~~~ll~avv~v--N~~qk~~~~~~i~~~ 305 (414)
T COG1004 272 ANAEELGYDPNLLEAVVEV--NERRKDKLAEKILNH 305 (414)
T ss_pred HHHHhcCCchHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 9999999999999999887 666777777776654
No 34
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.84 E-value=1e-19 Score=191.24 Aligned_cols=206 Identities=12% Similarity=0.082 Sum_probs=155.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC---CCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDiV 203 (458)
|++|+|||+|.||+.||.+|+++| |+|++|+|++++++.+.+.+.+.. ..+..+++++++++ ++|+|
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g--------~~i~~~~s~~e~v~~l~~~d~I 70 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGN--------TRVKGYHTLEELVNSLKKPRKV 70 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcC--------CcceecCCHHHHHhcCCCCCEE
Confidence 458999999999999999999999 999999999999998876532211 02445678888775 58999
Q ss_pred EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
|++|++ .+++++++++.+++.++++||+++|+...++.+. .+.+.+. | +.++..|..+.+.+...... ++.
T Consensus 71 il~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r-~~~l~~~-G-----i~fldapVSGG~~gA~~G~~-lm~ 142 (470)
T PTZ00142 71 ILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERR-IKRCEEK-G-----ILYLGMGVSGGEEGARYGPS-LMP 142 (470)
T ss_pred EEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHH-HHHHHHc-C-----CeEEcCCCCCCHHHHhcCCE-EEE
Confidence 999875 6799999999999999999999998877665433 3334332 4 34556665554433222233 556
Q ss_pred cCCHHHHHHHHHHHhcCCCe------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-
Q 012720 283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT- 355 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~- 355 (458)
|++++.+++++++|+..+-+ +.+.++. |.+.-+|+.+|.+.....++++|+..+++
T Consensus 143 GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~ 205 (470)
T PTZ00142 143 GGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYGDMQLISESYKLMKH 205 (470)
T ss_pred eCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 66899999999999987665 4444442 45556677888888888999999999998
Q ss_pred HcCCCccccccc
Q 012720 356 KMGAKPATITGL 367 (458)
Q Consensus 356 a~Gi~~~~~~~~ 367 (458)
+.|++++++.++
T Consensus 206 ~~gl~~~~l~~v 217 (470)
T PTZ00142 206 ILGMSNEELSEV 217 (470)
T ss_pred hcCCCHHHHHHH
Confidence 799998887654
No 35
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.83 E-value=3.9e-19 Score=185.15 Aligned_cols=274 Identities=14% Similarity=0.101 Sum_probs=183.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcC
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALL 198 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~ 198 (458)
.+|||+|||+|.||..||..|+++| |+|++||+++++++.++... ...+.++.. . .....++++ .+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~~~~----~~ 74 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRATTT----PE 74 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceeeecc----cc
Confidence 4689999999999999999999999 99999999999999876533 222322221 0 112334433 34
Q ss_pred CCCEEEEcCcc----------ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--------CCCCEE
Q 012720 199 GADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--------PRQPFI 260 (458)
Q Consensus 199 ~aDiVilaVp~----------~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~--------~~~~~~ 260 (458)
++|+||+|||. .++.++++++.++++++++||..+ ++.+.+.+.+...+.+.... ....+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S-Tv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~ 153 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES-TSPVGATEQMAEWLAEARPDLTFPQQAGEQADIN 153 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC-CCCCCHHHHHHHHHHHhccCCcccccccCCCCeE
Confidence 79999999997 478888889999999999999888 78888877777766654111 012345
Q ss_pred EEECcccHHHH---h-ccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012720 261 ALSGPSFALEL---M-NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (458)
Q Consensus 261 vl~gP~~a~ei---~-~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~ 336 (458)
+.+.|.+..+. . .+.+..+ +++.+++.+++++++|+..+-.+....++..+ +..|+.+
T Consensus 154 v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~A-----------------e~~Kl~~ 215 (415)
T PRK11064 154 IAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSARASELYKIFLEGECVVTNSRTA-----------------EMCKLTE 215 (415)
T ss_pred EEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHH-----------------HHHHHHH
Confidence 67788554321 1 1334443 46658899999999999876555455555444 4445667
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHH
Q 012720 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGA 416 (458)
Q Consensus 337 n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~ 416 (458)
|.+.++....++|+..+|+++|+|++.+.+..+....+ ....+|.-+ -|.++. ||..+
T Consensus 216 N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~ri--------~~l~pG~G~-GG~Clp-------------kD~~~ 273 (415)
T PRK11064 216 NSFRDVNIAFANELSLICADQGINVWELIRLANRHPRV--------NILQPGPGV-GGHCIA-------------VDPWF 273 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCc--------ccCCCCCCC-CCcccc-------------ccHHH
Confidence 78888889999999999999999988877543221111 001112111 133332 55555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 012720 417 VIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELM 452 (458)
Q Consensus 417 v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~ 452 (458)
+ .++++...++.+++.++ ++..|.-+++++.
T Consensus 274 L---~~~~~~~~~l~~~a~~~--N~~~~~~v~~~~~ 304 (415)
T PRK11064 274 I---VAQNPQQARLIRTAREV--NDGKPHWVIDQVK 304 (415)
T ss_pred H---HHhcCCccHHHHHHHHH--HHHhHHHHHHHHH
Confidence 4 34567778888888776 5556665555543
No 36
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.83 E-value=6.8e-20 Score=167.13 Aligned_cols=155 Identities=20% Similarity=0.228 Sum_probs=117.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
||||+|||+|.||..||.+|.++| ++|++|||++++++++.+.| +...++++|+++.+|+||+|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEAG--------------AEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHTT--------------EEEESSHHHHHHHBSEEEE-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHhh--------------hhhhhhhhhHhhcccceEee
Confidence 589999999999999999999999 99999999999999998865 56778999999999999999
Q ss_pred Ccc-ccHHHHHHh--hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 207 MPV-QFSSSFLEG--ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 207 Vp~-~~v~~vl~~--i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
||+ .++++++.+ +.+.+.+++++|+++ ++.+++.+.+.+.+.+. | +.++.+|..............++.+
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~-g-----~~~vdapV~Gg~~~a~~g~l~~~~g 137 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAK-G-----VRYVDAPVSGGPPGAEEGTLTIMVG 137 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHT-T-----EEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhc-c-----ceeeeeeeecccccccccceEEEcc
Confidence 997 779999998 999999999999999 68887766666666553 3 3455555544322222223345666
Q ss_pred CCHHHHHHHHHHHhcCCCeEE
Q 012720 284 KDRKLANAVQQLLASKHLRIS 304 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~ 304 (458)
++++.+++++++|+..+.+++
T Consensus 138 G~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 138 GDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp S-HHHHHHHHHHHHHHEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCce
Confidence 789999999999998877766
No 37
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.82 E-value=3.9e-19 Score=185.25 Aligned_cols=278 Identities=10% Similarity=0.073 Sum_probs=189.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C--CCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L--PENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l--~~~i~a~~~~~ea~~~aDiV 203 (458)
.|||+|||+|.||..||..|++ | |+|++||+++++++.++ .|..+.+.++.. + ...+.++++.+ +++++|++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~advv 80 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIE-KIKECNFY 80 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCCEE
Confidence 4799999999999999999887 6 99999999999999999 454433332211 0 12345666665 57899999
Q ss_pred EEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhH-HHHHHHHhCCCC-CCEEEEECcccHHHH
Q 012720 204 LHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM-SQIIPQALRNPR-QPFIALSGPSFALEL 271 (458)
Q Consensus 204 ilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l-~e~l~~~lg~~~-~~~~vl~gP~~a~ei 271 (458)
|+|||+. ++....+.|.+++++|++||..| ++.+.+.+.+ ...+.+..|... ..+.+.+.|.+..+.
T Consensus 81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S-Tv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G 159 (425)
T PRK15182 81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES-TVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPG 159 (425)
T ss_pred EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec-CCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCC
Confidence 9999964 34445567889999999999888 7888876643 344443223211 234455566554432
Q ss_pred h----ccCCeEEEEccCCHHHHHHHHHHHhcCC-CeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Q 012720 272 M----NKLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346 (458)
Q Consensus 272 ~----~g~~t~v~i~g~d~e~~e~l~~lL~~~g-~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~ 346 (458)
. .+.+..+ ++|.+++..+.++++++... .......+... ++..|+.+|.+.++....
T Consensus 160 ~a~~~~~~~~ri-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~-----------------AE~~Kl~~N~~~av~Ia~ 221 (425)
T PRK15182 160 DKKHRLTNIKKI-TSGSTAQIAELIDEVYQQIISAGTYKAESIKV-----------------AEAAKVIENTQRDLNIAL 221 (425)
T ss_pred cccccccCCCeE-EECCCHHHHHHHHHHHHHHhhcCcEEecCHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 1 1233334 45567888888999988643 22344445443 344556677888889999
Q ss_pred HHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCC
Q 012720 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426 (458)
Q Consensus 347 l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv 426 (458)
++|+..+|+++|+|.+.+.+..+.. .....+.+|. ++ |.++. ||..+++..++++|+
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a~~~~--------~~~~~~~pG~-vG-G~Clp-------------kD~~~L~~~a~~~g~ 278 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRAAGSK--------WNFLPFRPGL-VG-GHCIG-------------VDPYYLTHKSQGIGY 278 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHHhcCC--------CCcccCCCCc-cc-ccccc-------------ccHHHHHHHHHhcCC
Confidence 9999999999999998887653221 0001122333 22 44432 788899999999999
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720 427 KMPVLTAVARIIDNELTPKKAVLELMS 453 (458)
Q Consensus 427 ~~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (458)
.+++.+++.++ ++..|..+++++..
T Consensus 279 ~~~l~~~a~~i--N~~~~~~v~~~~~~ 303 (425)
T PRK15182 279 YPEIILAGRRL--NDNMGNYVSEQLIK 303 (425)
T ss_pred CcHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 99999999887 56777777766653
No 38
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.80 E-value=5.4e-18 Score=174.81 Aligned_cols=269 Identities=18% Similarity=0.166 Sum_probs=178.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCCE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY 202 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi 202 (458)
|||+|||+|.||..+|..|+. | |+|++||+++++++.+++ |....+.++.. ....+..+.+..++++++|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G--~~VigvD~d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N--HEVVALDILPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C--CcEEEEECCHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCE
Confidence 589999999999999988875 8 999999999999999886 33333333321 01234455667777899999
Q ss_pred EEEcCccc-----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012720 203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (458)
Q Consensus 203 VilaVp~~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei 271 (458)
||+|||.. +++++++++.. ++++++||..| ++.+++.+.+.+.+.+. .+.++|.++.+.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S-Tv~pgtt~~l~~~~~~~--------~v~~~PE~l~~G 146 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS-TVPVGFTAAMHKKYRTE--------NIIFSPEFLREG 146 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee-ecCCchHHHHHHHhhcC--------cEEECcccccCC
Confidence 99999954 57778888877 68899888887 78888766655544321 244578766532
Q ss_pred hc----cCCeEEEEccCCHHHHHHHHHHHhc--CCCeEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Q 012720 272 MN----KLPTAMVVASKDRKLANAVQQLLAS--KHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA 344 (458)
Q Consensus 272 ~~----g~~t~v~i~g~d~e~~e~l~~lL~~--~g~~v~-~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~ 344 (458)
-. -.+..+++|+ +++.++++.++|.. .+-.+. +..++..+|. .|+.+|.+.++..
T Consensus 147 ~a~~d~~~p~rvv~G~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~a~~I 208 (388)
T PRK15057 147 KALYDNLHPSRIVIGE-RSERAERFAALLQEGAIKQNIPTLFTDSTEAEA-----------------IKLFANTYLAMRV 208 (388)
T ss_pred cccccccCCCEEEEEc-CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-----------------HHHHHHHHHHHHH
Confidence 10 1233444454 55667888888854 221222 3455544444 4566677888889
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHH
Q 012720 345 QGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423 (458)
Q Consensus 345 ~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~ 423 (458)
..++|+..+|+++|+|.+.+.+..+....+ +..+ .+|.-+ -|.++. ||..++...+
T Consensus 209 a~~NE~a~lae~~GiD~~eV~~a~~~d~ri-------~~~~l~pG~G~-GG~Clp-------------kD~~~L~~~~-- 265 (388)
T PRK15057 209 AYFNELDSYAESLGLNTRQIIEGVCLDPRI-------GNHYNNPSFGY-GGYCLP-------------KDTKQLLANY-- 265 (388)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHhcCCCCC-------CCccCCCCCCC-CCcChh-------------hhHHHHHHhc--
Confidence 999999999999999988877643321111 0000 112212 133432 6666776554
Q ss_pred cCCCCcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720 424 YNVKMPVLTAVARIIDNELTPKKAVLELMS 453 (458)
Q Consensus 424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (458)
.++++++++++.++ +...|.-+++++.+
T Consensus 266 ~~~~~~l~~~~~~~--N~~~~~~~~~~~~~ 293 (388)
T PRK15057 266 QSVPNNLISAIVDA--NRTRKDFIADAILS 293 (388)
T ss_pred cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 57888999998887 77778878777754
No 39
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.80 E-value=1.4e-17 Score=175.33 Aligned_cols=283 Identities=16% Similarity=0.209 Sum_probs=196.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C-----CCceEEeCCHHhhcCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L-----PENVIATTDAKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l-----~~~i~a~~~~~ea~~~a 200 (458)
||||+|||+|.+|..+|..|+++|.+++|+++|.++++++.+++.+. ..+.++.. + ...+.++++.+++++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-PIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-ccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 58999999999999999999998644889999999999999988653 22233321 1 22478889988889999
Q ss_pred CEEEEcCccc---------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECc
Q 012720 201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP 265 (458)
Q Consensus 201 DiVilaVp~~---------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP 265 (458)
|++|+|||+. .++++++.|.++++++++||.-| ++.+.+.+.+...+.+.... ..+.+.+.|
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S-Tvp~Gtt~~~~~~l~~~~~g--~~f~v~~~P 156 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG--INFQILSNP 156 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC-CCCCChHHHHHHHHHhhCCC--CCeEEEECC
Confidence 9999999631 57788889999999998877655 68888777766666553211 356778888
Q ss_pred ccHHHHh--c--cCCeEEEEccCC----HHHHHHHHHHHhcCCC-eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012720 266 SFALELM--N--KLPTAMVVASKD----RKLANAVQQLLASKHL-RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (458)
Q Consensus 266 ~~a~ei~--~--g~~t~v~i~g~d----~e~~e~l~~lL~~~g~-~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~ 336 (458)
.+..+.- . -.+..+++++.+ .+..++++++++...- ......++..+|..|+ ..
T Consensus 157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~-----------------~e 219 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKL-----------------AA 219 (473)
T ss_pred CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHH-----------------HH
Confidence 8765421 1 234456667754 3457888888875421 2344567777776654 44
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHH
Q 012720 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAG 415 (458)
Q Consensus 337 n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g 415 (458)
|.+.++....++|+..+|+++|+|...+.+..+....+ +.++ .+|.-+ -|.++ .||..
T Consensus 220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~ri-------g~~~l~PG~G~-GG~Cl-------------pkD~~ 278 (473)
T PLN02353 220 NAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRI-------GPKFLNASVGF-GGSCF-------------QKDIL 278 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCcC-------CCCCCCCCCCC-CCcch-------------hhhHH
Confidence 56677788899999999999999987766533221110 0011 112111 13333 27889
Q ss_pred HHHHHHHHcCCC--CcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720 416 AVIALAQKYNVK--MPVLTAVARIIDNELTPKKAVLELMS 453 (458)
Q Consensus 416 ~v~~lA~~~gv~--~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (458)
++...|+++|++ .++.+++.++ +...|..+++++..
T Consensus 279 ~L~~~a~~~g~~~~~~l~~~~~~i--N~~~~~~vv~~~~~ 316 (473)
T PLN02353 279 NLVYICECNGLPEVAEYWKQVIKM--NDYQKSRFVNRVVS 316 (473)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 999999999998 8888888765 56667777766653
No 40
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.79 E-value=3.5e-18 Score=179.65 Aligned_cols=203 Identities=10% Similarity=0.074 Sum_probs=150.3
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCCEEEE
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCLH 205 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDiVil 205 (458)
+|+|||+|+||..||.+|+++| ++|++|+|++++++.+.+.+... .++..+.++++++ +.+|+||+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G--~~V~v~drt~~~~~~l~~~~~~g---------~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG--FTVSVYNRTPEKTDEFLAEHAKG---------KKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHhhccCC---------CCceecCCHHHHHhhcCCCCEEEE
Confidence 4899999999999999999999 99999999999999888652110 0123445666654 56899999
Q ss_pred cCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720 206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (458)
Q Consensus 206 aVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~ 284 (458)
|||+ .+++++++++.+++.++++||+++|+...++.+. .+.+.+. | +.++.+|..+...+..... .++.|+
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~-g-----i~fvdapVsGG~~gA~~G~-~im~GG 141 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAK-G-----ILFVGSGVSGGEEGARKGP-SIMPGG 141 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhc-C-----CEEEcCCCCCCHHHHhcCC-cCCCCC
Confidence 9997 6799999999999999999999998665554332 3333332 3 3466666665543322222 345677
Q ss_pred CHHHHHHHHHHHhcCCCeE------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-Hc
Q 012720 285 DRKLANAVQQLLASKHLRI------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KM 357 (458)
Q Consensus 285 d~e~~e~l~~lL~~~g~~v------~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~-a~ 357 (458)
+++.+++++++|+..+-++ .+.++. |.+..+|+.+|.+...+.++++|+..+++ +.
T Consensus 142 ~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~ 204 (467)
T TIGR00873 142 SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL 204 (467)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999766542 333332 45566778888888889999999999985 79
Q ss_pred CCCccccccc
Q 012720 358 GAKPATITGL 367 (458)
Q Consensus 358 Gi~~~~~~~~ 367 (458)
|++++.+.++
T Consensus 205 g~~~~~l~~v 214 (467)
T TIGR00873 205 GLSNEEIAEV 214 (467)
T ss_pred CCCHHHHHHH
Confidence 9998877654
No 41
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.76 E-value=1.4e-16 Score=156.29 Aligned_cols=252 Identities=12% Similarity=0.128 Sum_probs=165.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC----eEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQL----KVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~----~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
|||+|||+|+||.+|+..|.++| + +|++| +|++++.+.+.+.| +..+++..++++++|+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g--~~~~~~i~v~~~r~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASG--VVPPSRISTADDSNPARRDVFQSLG--------------VKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCC--CCCcceEEEEeCCCHHHHHHHHHcC--------------CEEeCChHHHHhcCCE
Confidence 68999999999999999999998 6 89998 99998887776644 3455677787889999
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
||+|||++++++++.++.+.+.++++||++.+|+..+ .+.+.++.. . .+...|+.+..+..+.. .+..+
T Consensus 65 Vil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~-------~l~~~~~~~--~-vvr~mP~~~~~~~~~~~-~l~~~ 133 (266)
T PLN02688 65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLA-------DLQEWAGGR--R-VVRVMPNTPCLVGEAAS-VMSLG 133 (266)
T ss_pred EEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHH-------HHHHHcCCC--C-EEEECCCcHHHHhCceE-EEEeC
Confidence 9999999999999999988888899999998887653 233444431 1 23367887776654432 23332
Q ss_pred -cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720 283 -SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (458)
Q Consensus 283 -g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~ 361 (458)
+.+++.++.++++|+..|. +.+.++-. .+.+....|.+ ..+...+..++.|+ +++.|+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~--------~d~~~~~~g~g-------~a~~~~~~~a~~ea---~~~~Gl~~ 194 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKL--------LDAVTGLSGSG-------PAYIFLAIEALADG---GVAAGLPR 194 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHH--------cchhHhhhcCH-------HHHHHHHHHHHHHH---HHHcCCCH
Confidence 3477889999999999997 65543210 11111111211 22355667777777 88899999
Q ss_pred cccccccCCcchhhhhccCCCccchHHHHh-hCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (458)
Q Consensus 362 ~~~~~~~g~gd~~~t~~~~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~ 440 (458)
+...++. ..... .....+ ..|.+.+++.++.. ..-| .....++..++.|+.-.+.+++.+.++.
T Consensus 195 ~~a~~~~------~~~~~------gs~~l~~~~~~~~~~l~~~v~-spgG--~t~~~l~~l~~~g~~~~~~~a~~~~~~r 259 (266)
T PLN02688 195 DVALSLA------AQTVL------GAAKMVLETGKHPGQLKDMVT-SPGG--TTIAGVHELEKGGFRAALMNAVVAAAKR 259 (266)
T ss_pred HHHHHHH------HHHHH------HHHHHHHhcCCCHHHHHHhCC-CCch--HHHHHHHHHHHCChHHHHHHHHHHHHHH
Confidence 8776531 00000 001112 23444433322220 1111 2245567777888888888888877654
No 42
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=3.9e-16 Score=156.08 Aligned_cols=216 Identities=17% Similarity=0.154 Sum_probs=159.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG 199 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~ 199 (458)
.++|+|||+|.+|.++|..++++| ++|+.+|.++.+++.+++. ......++.. -...+++++|+++ ++.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G--~~ViG~DIn~~~Vd~ln~G-~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~ 84 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAG--FKVIGVDINQKKVDKLNRG-ESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKE 84 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcC--CceEeEeCCHHHHHHHhCC-cceeecCcHHHHHHHHHhcCCceEecChhh-ccc
Confidence 479999999999999999999999 9999999999999999873 3222222221 1345889999988 579
Q ss_pred CCEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH-hCCCC-CCEEEEECccc
Q 012720 200 ADYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA-LRNPR-QPFIALSGPSF 267 (458)
Q Consensus 200 aDiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~-lg~~~-~~~~vl~gP~~ 267 (458)
||++|+|||+. .+++..+.|++.+++|++||.=| ++.++|.+.+...+.+. -|-.. .++.+-+.|..
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlES-T~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILES-TTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEec-CCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 99999999963 47778889999999999988666 68888877777766664 22111 23444455543
Q ss_pred -----HHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012720 268 -----ALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL 342 (458)
Q Consensus 268 -----a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al 342 (458)
...-....+ =+++|.+++..+....+++..--.+....+...+|..|++-| ..+..
T Consensus 164 v~PG~~~~el~~~~--kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN-----------------~fRdV 224 (436)
T COG0677 164 VLPGNVLKELVNNP--KVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTEN-----------------TFRDV 224 (436)
T ss_pred cCCCchhhhhhcCC--ceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhh-----------------hhhHH
Confidence 221111222 256787888888888888876555777788888888776554 55667
Q ss_pred HHHHHHHHHHHHHHcCCCcccccc
Q 012720 343 VAQGCSEIRWLATKMGAKPATITG 366 (458)
Q Consensus 343 ~~~~l~E~~~la~a~Gi~~~~~~~ 366 (458)
..+..+|+..+|.++|+|...+.+
T Consensus 225 NIALaNElali~~~~GIdvwevIe 248 (436)
T COG0677 225 NIALANELALICNAMGIDVWEVIE 248 (436)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHH
Confidence 788999999999999999665554
No 43
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=1.8e-15 Score=146.54 Aligned_cols=201 Identities=15% Similarity=0.189 Sum_probs=141.8
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCC-CCe-EEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~-~~~-V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (458)
||+.|||+|||+|.||.+++..|.++|. +.+ +++++|+ +++.+.+.+.. ++..+.+.+++++++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 67 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------------NVSTTTDWKQHVTSV 67 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------------CcEEeCChHHHHhcC
Confidence 5667899999999999999999998762 233 7778874 66676665531 134556788888999
Q ss_pred CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012720 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV 280 (458)
Q Consensus 201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~ 280 (458)
|+||+|+|.+.++++++++.++++ +++||++++|+..+ .+++.++.. ...++.+|+++.+++.+.+....
T Consensus 68 DiViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~-------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 68 DTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPS-------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCHH-------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEee
Confidence 999999999999999999988776 67999999999864 355555432 23568999999999888665544
Q ss_pred EccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720 281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (458)
Q Consensus 281 i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~ 360 (458)
....+++..+.++++|+..|......++. .+.++...|. .. +++...+..+...+.+.|++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~~e~~---------~~~~~a~~gs-------~p---a~~~~~~~a~~~~~~~~Gl~ 198 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLCTEEE---------VHQLTAVTGS-------AP---AFLYYFAESLIEATKSYGVD 198 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEECHHH---------cchHHhhhcc-------hH---HHHHHHHHHHHHHHHHcCCC
Confidence 44567888999999999999887654321 1222211121 11 22233334455558888999
Q ss_pred cccccc
Q 012720 361 PATITG 366 (458)
Q Consensus 361 ~~~~~~ 366 (458)
++...+
T Consensus 199 ~~~a~~ 204 (245)
T PRK07634 199 EETAKH 204 (245)
T ss_pred HHHHHH
Confidence 776543
No 44
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.68 E-value=6.2e-16 Score=162.15 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCC---CCEEEEcCcc-ccH
Q 012720 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG---ADYCLHAMPV-QFS 212 (458)
Q Consensus 138 mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVilaVp~-~~v 212 (458)
||..||.+|+++| ++|++|||++++++.+.+. +.. .++..+.+++++++. +|+||+|||+ .++
T Consensus 1 MG~~mA~nL~~~G--~~V~v~nrt~~~~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v 68 (459)
T PRK09287 1 MGKNLALNIASHG--YTVAVYNRTPEKTDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV 68 (459)
T ss_pred CcHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH
Confidence 8999999999999 9999999999999998873 310 135667789887764 8999999997 579
Q ss_pred HHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHH
Q 012720 213 SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292 (458)
Q Consensus 213 ~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l 292 (458)
++++.++.+.+.+|.+||+++|....++ ....+.+.+. | +.++..|..+.+.+...... ++.|++++.++++
T Consensus 69 ~~Vi~~l~~~l~~GdiiID~gn~~~~~t-~~~~~~l~~~-G-----i~fvdapVSGG~~gA~~G~s-iM~GG~~~a~~~~ 140 (459)
T PRK09287 69 DAVIEQLLPLLEKGDIIIDGGNSNYKDT-IRREKELAEK-G-----IHFIGMGVSGGEEGALHGPS-IMPGGQKEAYELV 140 (459)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCCE-EEEeCCHHHHHHH
Confidence 9999999999999999999997554443 3344444443 3 34666666654433222233 4566689999999
Q ss_pred HHHHhcCCCeE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-HcCCCcccc
Q 012720 293 QQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KMGAKPATI 364 (458)
Q Consensus 293 ~~lL~~~g~~v-------~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~-a~Gi~~~~~ 364 (458)
+++|+..+-++ .+.++. |.+..+|+.+|.+.....++++|+..+++ ++|++++.+
T Consensus 141 ~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l 203 (459)
T PRK09287 141 APILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEI 203 (459)
T ss_pred HHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999766543 344432 55566778888888889999999999999 589998877
Q ss_pred ccc
Q 012720 365 TGL 367 (458)
Q Consensus 365 ~~~ 367 (458)
.++
T Consensus 204 ~~v 206 (459)
T PRK09287 204 ADV 206 (459)
T ss_pred HHH
Confidence 654
No 45
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=4.4e-15 Score=146.96 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=134.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC--CCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG--~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
..|||+|||+|+||.+|+..|.++| .+++|++|+|+. ++++.+.... ++..+.++.++++++|+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-------------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-------------CceEeCCHHHHHhcCCE
Confidence 3479999999999999999999886 247899999975 4566665431 23455677787889999
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
||+|||++.+.+++.++.+.+.++++||++.+|+.+++ +.+.++.. ...+...|+.+.....+ .+ ++.+
T Consensus 69 Vilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~-------l~~~~~~~--~~v~r~mPn~~~~~~~~-~t-~~~~ 137 (279)
T PRK07679 69 LFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHS-------IRNLLQKD--VPIIRAMPNTSAAILKS-AT-AISP 137 (279)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH-------HHHHcCCC--CeEEEECCCHHHHHhcc-cE-EEee
Confidence 99999999999999999888888999999988998753 33333321 12345667666554433 23 2223
Q ss_pred c--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720 283 S--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (458)
Q Consensus 283 g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~ 360 (458)
+ .+++..+.++++|+..|..+...++.. +.+...+|.+ +.+...+..++.|+ +++.|++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~---------~~~~a~~Gsg-------pa~~~~~~eal~e~---~~~~Gl~ 198 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSVVEEEDM---------HAVTALSGSG-------PAYIYYVVEAMEKA---AKKIGLK 198 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEeCHHHh---------hhHHHhhcCH-------HHHHHHHHHHHHHH---HHHcCCC
Confidence 3 246788999999999997665543311 1111111211 12234444454444 8899999
Q ss_pred ccccccc
Q 012720 361 PATITGL 367 (458)
Q Consensus 361 ~~~~~~~ 367 (458)
++...++
T Consensus 199 ~~~a~~~ 205 (279)
T PRK07679 199 EDVAKSL 205 (279)
T ss_pred HHHHHHH
Confidence 8877653
No 46
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=9e-15 Score=144.20 Aligned_cols=197 Identities=13% Similarity=0.123 Sum_probs=140.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
.|||+|||+|+||.+|+..|.++|. ..+|++|+|++++++.+.+ .| +..+++..++++++|+|
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g--------------~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG--------------ITITTNNNEVANSADIL 67 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC--------------cEEeCCcHHHHhhCCEE
Confidence 3689999999999999999999872 2479999999988887765 33 34455777778899999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~- 282 (458)
|+|||++.+.++++++.+.++++++|||+..|+..+ .+.+.++.. .-.+...|+.+..++.|.. .+..+
T Consensus 68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~-------~l~~~l~~~--~~vvR~MPN~~~~vg~g~t-~~~~~~ 137 (272)
T PRK12491 68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIK-------STENEFDRK--LKVIRVMPNTPVLVGEGMS-ALCFNE 137 (272)
T ss_pred EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHH-------HHHHhcCCC--CcEEEECCChHHHHcCceE-EEEeCC
Confidence 999999999999999999888889999999999874 355555431 1257889999988776632 23232
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~ 362 (458)
..+.+..+.++.+|+..|......++.. +++...+|. . -+++...+..+..-+.+.|++.+
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~~~~E~~~---------d~~talsgs-------g---PAf~~~~~eal~~a~v~~Gl~~~ 198 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTEVVNEKLM---------DVVTSISGS-------S---PAYVYMFIEAMADAAVLGGMPRK 198 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcHHHh---------hhHHHhccC-------c---HHHHHHHHHHHHHHHHHcCCCHH
Confidence 2356678899999999997765544322 222211121 1 13334444556666777888876
Q ss_pred cccc
Q 012720 363 TITG 366 (458)
Q Consensus 363 ~~~~ 366 (458)
+..+
T Consensus 199 ~A~~ 202 (272)
T PRK12491 199 QAYK 202 (272)
T ss_pred HHHH
Confidence 5543
No 47
>PRK07680 late competence protein ComER; Validated
Probab=99.65 E-value=3.1e-14 Score=140.43 Aligned_cols=158 Identities=11% Similarity=0.168 Sum_probs=116.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
|||+|||+|+||.+++..|.++|. .++|++|+|+++..+.+.+.. .++..+.+..+++.++|+||+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~------------~g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY------------PGIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc------------CCeEEECCHHHHHHhCCEEEE
Confidence 589999999999999999999872 137999999998877775531 024556677777889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-C
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K 284 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-~ 284 (458)
|||++++.++++++.+++.++++||++++|+.. +.+.+.++. ..+..-|+.+.....|.. .+..+. .
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~-------~~L~~~~~~----~~~r~~p~~~~~~~~G~t-~~~~g~~~ 136 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISV-------EQLETLVPC----QVARIIPSITNRALSGAS-LFTFGSRC 136 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH-------HHHHHHcCC----CEEEECCChHHHHhhccE-EEeeCCCC
Confidence 999999999999999989888999999998854 234444442 133445665544434432 222332 3
Q ss_pred CHHHHHHHHHHHhcCCCeEEEcCCh
Q 012720 285 DRKLANAVQQLLASKHLRISTSSDV 309 (458)
Q Consensus 285 d~e~~e~l~~lL~~~g~~v~~~~di 309 (458)
+.+..+.+.++|+..|..+...+++
T Consensus 137 ~~~~~~~~~~ll~~~G~~~~i~e~~ 161 (273)
T PRK07680 137 SEEDQQKLERLFSNISTPLVIEEDI 161 (273)
T ss_pred CHHHHHHHHHHHHcCCCEEEEChHh
Confidence 5677899999999999877776654
No 48
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.64 E-value=3.7e-15 Score=151.13 Aligned_cols=200 Identities=14% Similarity=0.121 Sum_probs=136.9
Q ss_pred CeEEEECcchH--------------------HHHHHHHHHhcCCCCeEEEEeCCHHH-----HHHHHhhcCCCccCCCCC
Q 012720 128 NKVVVLGGGSF--------------------GTAMAAHVANKKSQLKVYMLMRDPAV-----CQSINEKHCNCRYFPEQK 182 (458)
Q Consensus 128 ~kI~IIGaG~m--------------------G~~iA~~La~aG~~~~V~v~~r~~~~-----~e~l~~~g~~~~~~~~~~ 182 (458)
|||.|.|+|+- |++||.+|+++| |+|++|||+++. ++.+.+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG--~~V~v~Dr~~~~l~~~~~~~l~~~G---------- 68 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG--HDVVLAEPNRSILSEELWKKVEDAG---------- 68 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC--CeEEEEECCHHHhhHHHHHHHHHCC----------
Confidence 68888888873 888999999999 999999999873 33344332
Q ss_pred CCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------
Q 012720 183 LPENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------ 255 (458)
Q Consensus 183 l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~------ 255 (458)
+.++++..++++++|+||+|+|... +++++.++.+.++++++|+++++ +.+.. .++.+.+.++..
T Consensus 69 ----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST-~~~~~---~s~~l~~~l~~~~~~~gi 140 (342)
T PRK12557 69 ----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCT-VSPVV---LYYSLEGELRTKRKDVGI 140 (342)
T ss_pred ----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecC-CCHHH---HHHHHHHHhcccccccCe
Confidence 4566788888899999999999877 89999999999999999999885 44432 223333333210
Q ss_pred --CCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhccc
Q 012720 256 --RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN 333 (458)
Q Consensus 256 --~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~k 333 (458)
..+..+..+|.++..+..|.++. ...+.+++.+++++++|+..|.+++..+. |....+|
T Consensus 141 ~~~~p~~v~Gae~g~l~Vm~gg~t~-~~~~~~~e~~e~v~~LL~a~G~~v~~~~~------------------g~~~~vk 201 (342)
T PRK12557 141 SSMHPAAVPGTPQHGHYVIAGKTTN-GTELATEEQIEKCVELAESIGKEPYVVPA------------------DVVSAVA 201 (342)
T ss_pred eecCCccccccccchheEEeCCCcc-cccCCCHHHHHHHHHHHHHcCCEEEEeCH------------------HHHHHHH
Confidence 01222223333333222222221 11234788899999999999998876552 1223334
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720 334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (458)
Q Consensus 334 l~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~ 366 (458)
+.+|.+.++...++.|++.++++.|.+|..+.+
T Consensus 202 ~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 202 DMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 556677777788889999999999888776654
No 49
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.63 E-value=6e-14 Score=140.83 Aligned_cols=255 Identities=16% Similarity=0.129 Sum_probs=157.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCC---CCCCCceEEeCCHHhh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPE---QKLPENVIATTDAKTA 196 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-------~~~~~~~~---~~l~~~i~a~~~~~ea 196 (458)
+|||+|||+|.||+.||..|+++| ++|++|||+++.++...+.- ....+.++ ..+..++..+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 468999999999999999999999 99999999998776543210 00001110 1123456788899888
Q ss_pred cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc
Q 012720 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274 (458)
Q Consensus 197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g 274 (458)
++++|+||.|+|.. ....++.++....+++.++.+.+++... ..+.+.+..+ ...+...|..+....
T Consensus 80 ~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~-------~~la~~~~~~--~~~~~~hp~~p~~~~-- 148 (308)
T PRK06129 80 VADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA-------SAFTEHLAGR--ERCLVAHPINPPYLI-- 148 (308)
T ss_pred hCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH-------HHHHHhcCCc--ccEEEEecCCCcccC--
Confidence 89999999999975 3566667777777666666554443322 2233333221 123344444332111
Q ss_pred CCeEEEEc---cCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720 275 LPTAMVVA---SKDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (458)
Q Consensus 275 ~~t~v~i~---g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~ 350 (458)
+ .+.+. +.+++.++++.++|+..|.++.+.+ +..+. + .| .+...+++|+
T Consensus 149 -~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i----------------~n----rl~~a~~~EA 201 (308)
T PRK06129 149 -P-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----V----------------LN----RLQGALLREA 201 (308)
T ss_pred -c-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----H----------------HH----HHHHHHHHHH
Confidence 1 22333 3678999999999999998877653 43221 1 11 1345789999
Q ss_pred HHHHHHcCCCcccccccc--CCcchhhhhccCCCccchHHHHh-hCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCC
Q 012720 351 RWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427 (458)
Q Consensus 351 ~~la~a~Gi~~~~~~~~~--g~gd~~~t~~~~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~ 427 (458)
+.++++.|++++.+.+.. +.|..... . ..+ .-.++ ..|+... . ..+|..+..++++..+.+
T Consensus 202 ~~l~~~g~~~~~~id~~~~~~~g~~~~~-~----gp~-~~~d~~~~~g~~~-~---------~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 202 FRLVADGVASVDDIDAVIRDGLGLRWSF-M----GPF-ETIDLNAPGGVAD-Y---------AQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHcCCCCHHHHHHHHHhccCCCccC-c----CHH-HHHhccccccHHH-H---------HHHHHHHHHhhccccCCC
Confidence 999999999998876542 22211000 0 000 01111 1122211 1 247888999999999999
Q ss_pred CcHHHHHHHH
Q 012720 428 MPVLTAVARI 437 (458)
Q Consensus 428 ~P~~~~v~~l 437 (458)
.|+++..++-
T Consensus 266 ~~~~~~~~~~ 275 (308)
T PRK06129 266 VPWDGELVAR 275 (308)
T ss_pred chhhHHHHHH
Confidence 9988765553
No 50
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.60 E-value=6.1e-14 Score=136.52 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=142.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG--~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
+|||+|||+|+||.+|+..|.++| ...+|++.+|++++.+++.+.- ++..+++..+++.++|+||
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-------------g~~~~~~~~~~~~~advv~ 67 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-------------GVVTTTDNQEAVEEADVVF 67 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-------------CCcccCcHHHHHhhCCEEE
Confidence 479999999999999999999998 2368999999999887565531 1122557778889999999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE-cc
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV-AS 283 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i-~g 283 (458)
+|||++..++++.++.+ ..++++|||+..|+..+ .+.+.++. . -.+...|+.+..++.|... +.. ..
T Consensus 68 LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~-------~l~~~l~~--~-~vvR~MPNt~a~vg~g~t~-i~~~~~ 135 (266)
T COG0345 68 LAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSIE-------TLERLLGG--L-RVVRVMPNTPALVGAGVTA-ISANAN 135 (266)
T ss_pred EEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHH-------HHHHHcCC--C-ceEEeCCChHHHHcCccee-eecCcc
Confidence 99999999999999998 77899999999999874 45566652 1 2577899998888776432 222 12
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~ 363 (458)
.+++..+.+.++|+..|.-+.+.++.. +.+...+|. .. +++...+..+..-+.+.|++.++
T Consensus 136 ~~~~~~~~v~~l~~~~G~v~~v~E~~~---------da~TaisGS-------gP---Ayv~~~iEal~~agv~~Gl~~~~ 196 (266)
T COG0345 136 VSEEDKAFVEALLSAVGKVVEVEESLM---------DAVTALSGS-------GP---AYVFLFIEALADAGVRLGLPREE 196 (266)
T ss_pred CCHHHHHHHHHHHHhcCCeEEechHHh---------hHHHHHhcC-------CH---HHHHHHHHHHHHHHHHcCCCHHH
Confidence 356778899999999998777665432 222222221 12 33334444566667788998776
Q ss_pred ccc
Q 012720 364 ITG 366 (458)
Q Consensus 364 ~~~ 366 (458)
..+
T Consensus 197 A~~ 199 (266)
T COG0345 197 ARE 199 (266)
T ss_pred HHH
Confidence 654
No 51
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.60 E-value=4.7e-14 Score=150.31 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=135.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc----CCCccCCCCCC--CCceEEeCCHHhhcCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH----CNCRYFPEQKL--PENVIATTDAKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g----~~~~~~~~~~l--~~~i~a~~~~~ea~~~a 200 (458)
.|||+|||+|.||.+||..|+++| ++|++||++++.++.+.+.- ....++....+ ..++..++++++++++|
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G--~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAG--IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence 579999999999999999999999 99999999998877653210 00011111111 12367788998889999
Q ss_pred CEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeE
Q 012720 201 DYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA 278 (458)
Q Consensus 201 DiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~ 278 (458)
|+||.|+|... ...++.++.+.++++++|.+.+.|+... .+.+.+..+ ...++.-|..+... + + .
T Consensus 82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s-------~l~~~~~~~--~r~~~~hP~nP~~~--~-~-L 148 (495)
T PRK07531 82 DWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS-------DLQEGMTHP--ERLFVAHPYNPVYL--L-P-L 148 (495)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCc--ceEEEEecCCCccc--C-c-e
Confidence 99999999764 4556677888888888887777777643 223333321 23455555443321 1 2 2
Q ss_pred EEEccC---CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH-HHHHHHHHHHHHH
Q 012720 279 MVVASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA-LVAQGCSEIRWLA 354 (458)
Q Consensus 279 v~i~g~---d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~a-l~~~~l~E~~~la 354 (458)
+.+.++ +++.+++++++|+..|....+... ..+|.... ++...++|++.++
T Consensus 149 vevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------------------~~~gfi~nrl~~a~~~EA~~L~ 203 (495)
T PRK07531 149 VELVGGGKTSPETIRRAKEILREIGMKPVHIAK-------------------------EIDAFVGDRLLEALWREALWLV 203 (495)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------------------CCcchhHHHHHHHHHHHHHHHH
Confidence 334333 378999999999999988766431 22333332 3344469999999
Q ss_pred HHcCCCccccccc
Q 012720 355 TKMGAKPATITGL 367 (458)
Q Consensus 355 ~a~Gi~~~~~~~~ 367 (458)
++.|++++++.+.
T Consensus 204 ~~g~~s~~~id~~ 216 (495)
T PRK07531 204 KDGIATTEEIDDV 216 (495)
T ss_pred HcCCCCHHHHHHH
Confidence 9999998877654
No 52
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.59 E-value=1.6e-13 Score=134.75 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=113.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
||||+|||+|+||..++..|.++|. .++|.+|+|+++..+.+.+.. ++..+.+.++++.++|+||+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-------------g~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-------------GVRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-------------CCeecCChHHHHhcCCEEEE
Confidence 6899999999999999999998862 257999999998888777641 12344577777789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-C
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K 284 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-~ 284 (458)
|||.+.+.++++.+.+.+ +++||++++|+..+ .+.+.++.. .-.+..-|+++.....+. +.+..+. .
T Consensus 69 ~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~-------~l~~~~~~~--~~iv~~~P~~p~~~~~~~-~~i~~~~~~ 136 (267)
T PRK11880 69 AVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLA-------RLERLLGAD--LPVVRAMPNTPALVGAGM-TALTANALV 136 (267)
T ss_pred EcCHHHHHHHHHHHHhhc--CCEEEEecCCCCHH-------HHHHhcCCC--CcEEEecCCchHHHcCce-EEEecCCCC
Confidence 999999999999998876 57899999998643 344444421 112345677665554432 2222232 4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEc
Q 012720 285 DRKLANAVQQLLASKHLRISTS 306 (458)
Q Consensus 285 d~e~~e~l~~lL~~~g~~v~~~ 306 (458)
+++..+.++.+|+..|..+...
T Consensus 137 ~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 137 SAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred CHHHHHHHHHHHHhCCeEEEEC
Confidence 7888899999999999765554
No 53
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.57 E-value=1.4e-13 Score=138.32 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=133.3
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccCCCC--CCCCceEEeCCHHhh
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPEQ--KLPENVIATTDAKTA 196 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----g~~~~~~~~~--~l~~~i~a~~~~~ea 196 (458)
|..++||+|||+|.||+.||..|+++| ++|++|+++++.++.+++. +.... .+. .....+..+++.+++
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAP--LGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhh--cccHHHHhhceEEeCCHHHH
Confidence 345679999999999999999999999 9999999999888777652 21000 000 011235667788887
Q ss_pred cCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc
Q 012720 197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274 (458)
Q Consensus 197 ~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g 274 (458)
++++|+||+|||... ...++.++.+.++++++|++.+.|+... .+.+.++... .+ +..-|..+... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~-------~l~~~~~~~~-~~-ig~h~~~p~~~--~ 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT-------AIAQAVTRPE-RF-VGTHFFTPADV--I 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH-------HHHhhcCCcc-cE-EEEccCCCCcc--C
Confidence 899999999999753 6778888888888888888888777542 2333333210 11 11112222111 1
Q ss_pred CCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcC-ChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012720 275 LPTAMVVAS--KDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (458)
Q Consensus 275 ~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~ 351 (458)
... .++.+ .+++.++.+.++|+..|..+.... |..+.. .+| ++...++|+.
T Consensus 146 ~l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i---------------------~nr----~~~~~~~Ea~ 199 (311)
T PRK06130 146 PLV-EVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFI---------------------ANR----IQHALAREAI 199 (311)
T ss_pred ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcH---------------------HHH----HHHHHHHHHH
Confidence 122 22333 268899999999999998766653 543321 111 2235789999
Q ss_pred HHHHHcCCCcccccc
Q 012720 352 WLATKMGAKPATITG 366 (458)
Q Consensus 352 ~la~a~Gi~~~~~~~ 366 (458)
.++++.|++++++..
T Consensus 200 ~l~~~g~~~~~~id~ 214 (311)
T PRK06130 200 SLLEKGVASAEDIDE 214 (311)
T ss_pred HHHHcCCCCHHHHHH
Confidence 999999999877654
No 54
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.56 E-value=4.1e-13 Score=132.84 Aligned_cols=158 Identities=11% Similarity=0.144 Sum_probs=119.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
|+||+|||+|+||.+++..|.++|. .++|.+|+|+. ++.+.+.... ..+..+.+..++++++|+|
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~------------~~~~~~~~~~e~~~~aDvV 68 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKY------------PTVELADNEAEIFTKCDHS 68 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHc------------CCeEEeCCHHHHHhhCCEE
Confidence 4789999999999999999998861 36899999864 4444444321 0134456777778899999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~- 282 (458)
|+|||.+.+.+++.++.++++++++||++++|+..+ .+.+.++. .-.+...|+.+..++.|.. .+...
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~-------~l~~~~~~---~~vvR~MPN~~~~~g~g~t-~~~~~~ 137 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLD-------DLLEITPG---LQVSRLIPSLTSAVGVGTS-LVAHAE 137 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC---CCEEEEeCccHHHHhhhcE-EEecCC
Confidence 999999999999999999888888999999999874 34455543 1257888999988877643 23222
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEcC
Q 012720 283 SKDRKLANAVQQLLASKHLRISTSS 307 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~v~~~~ 307 (458)
.-+++..+.++.+|+..|......+
T Consensus 138 ~~~~~~~~~v~~l~~~~G~~~~v~E 162 (277)
T PRK06928 138 TVNEANKSRLEETLSHFSHVMTIRE 162 (277)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEch
Confidence 2356778899999999998776654
No 55
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.54 E-value=2.5e-13 Score=129.74 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=119.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+||| +|+||+++|..|+++| ++|++|+|++++++.+.+.... .+........+..+ +..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~--~~~~~g~~~~~~~~-~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALE--ELGHGGSDIKVTGA-DNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHh--hccccCCCceEEEe-ChHHHHhcCCEEEEE
Confidence 6899997 8999999999999999 9999999999888877654321 01100111122333 456678899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcch----------hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc--
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT----------LRMMSQIIPQALRNPRQPFIALSGPSFALELMNK-- 274 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t----------~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g-- 274 (458)
+|.+++.++++++.+.+. +++||+++||+..+. ....++.+++.++.. .-.+..-|+...+...+
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~ 152 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVD 152 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCC
Confidence 999999999999877765 589999999997520 012346676766531 01122223333332221
Q ss_pred --CCeEEEEccCCHHHHHHHHHHHhcC-CCeEEEcCChH
Q 012720 275 --LPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVT 310 (458)
Q Consensus 275 --~~t~v~i~g~d~e~~e~l~~lL~~~-g~~v~~~~di~ 310 (458)
....+.++|.+++..+.+.++.+.. ||..+..+.+.
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~ 191 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLE 191 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchh
Confidence 1223456777788888999999998 99988766553
No 56
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.54 E-value=9.7e-14 Score=129.17 Aligned_cols=163 Identities=23% Similarity=0.262 Sum_probs=107.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a 200 (458)
|||+|||+|.+|..+|..|+++| |+|+.+|.++++++.+++ |..+.+.++.. . ..++.++++.++++.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNN-GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhh-ccccccccchhhhhccccccccchhhhhhhhhhhcc
Confidence 79999999999999999999999 999999999999999887 43333444421 1 35788999999989999
Q ss_pred CEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhh-HHHHHHHHhCCCCCCEEEEECcccHH
Q 012720 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRM-MSQIIPQALRNPRQPFIALSGPSFAL 269 (458)
Q Consensus 201 DiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~-l~e~l~~~lg~~~~~~~vl~gP~~a~ 269 (458)
|++|+|||+. .+.++++.|.+.++++++||.-| ++.+++.+. +..++++. +.....+.+.+.|.+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S-TvppGtt~~~~~~ile~~-~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES-TVPPGTTEELLKPILEKR-SGKKEDFHLAYSPERLR 155 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS-SSSTTHHHHHHHHHHHHH-CCTTTCEEEEE------
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc-EEEEeeehHhhhhhhhhh-cccccCCeEEECCCccC
Confidence 9999999853 37888899999999988887666 789887763 44555544 32224567778887654
Q ss_pred HH----hccCCeEEEEccCCHHHHHHHHHH
Q 012720 270 EL----MNKLPTAMVVASKDRKLANAVQQL 295 (458)
Q Consensus 270 ei----~~g~~t~v~i~g~d~e~~e~l~~l 295 (458)
+. -...+..++.|..+....++++++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 31 012455666676666665566654
No 57
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.52 E-value=6.3e-13 Score=131.31 Aligned_cols=173 Identities=16% Similarity=0.167 Sum_probs=113.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
|||+|||+|.||..||..|.++|..++|++|+|+++.++.+.+.|.. ....+.+++. ++|+||+||
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV-------------DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC-------------cccCCHHHHh-cCCEEEEeC
Confidence 58999999999999999999998334789999999888877665421 1123556654 599999999
Q ss_pred ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE-----ECcccHH-HHhccCCeEEEE
Q 012720 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-----SGPSFAL-ELMNKLPTAMVV 281 (458)
Q Consensus 208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl-----~gP~~a~-ei~~g~~t~v~i 281 (458)
|...+.+++.++.+ ++++++|+++.. +. ..+.+.+.+..+..+.....+ .||..+. ....|....++.
T Consensus 67 p~~~~~~~~~~l~~-l~~~~iv~d~gs-~k----~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~ 140 (275)
T PRK08507 67 PVDAIIEILPKLLD-IKENTTIIDLGS-TK----AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD 140 (275)
T ss_pred cHHHHHHHHHHHhc-cCCCCEEEECcc-ch----HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec
Confidence 99999999999988 888999988642 21 223344433322111111111 2232222 223444332222
Q ss_pred c-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHH
Q 012720 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN 320 (458)
Q Consensus 282 ~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkN 320 (458)
. ..+++.++.++++|+..|.++...+....++..+++-|
T Consensus 141 ~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~ 180 (275)
T PRK08507 141 VEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISH 180 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhH
Confidence 2 24677889999999999999888776655555554444
No 58
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.52 E-value=3.5e-13 Score=133.42 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=115.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
|||+|||+|.||..+|..|.++| ++|++|+++++..+.+.+.|... ...++. ++++++|+||+|+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGLVD------------EASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCcc------------cccCCH-hHhcCCCEEEEcC
Confidence 58999999999999999999999 99999999998888877654210 122344 4578999999999
Q ss_pred ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc-HHH-----HhccCCeEEEE
Q 012720 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-ALE-----LMNKLPTAMVV 281 (458)
Q Consensus 208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~-a~e-----i~~g~~t~v~i 281 (458)
|...+.++++++.+.++++++|++++ ++.... .+.+.+... .+.....+.|+.. +.+ ...|....++.
T Consensus 66 p~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~~~----~~~~~~~~~-~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p 139 (279)
T PRK07417 66 PIGLLLPPSEQLIPALPPEAIVTDVG-SVKAPI----VEAWEKLHP-RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP 139 (279)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEeCc-chHHHH----HHHHHHhhC-CceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence 99999999999999888888887766 444321 222222211 1111123344431 111 23454443332
Q ss_pred c-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHH
Q 012720 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN 320 (458)
Q Consensus 282 ~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkN 320 (458)
. ..+++.++.++++++..|.++...+....+...++.-|
T Consensus 140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~sh 179 (279)
T PRK07417 140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISH 179 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcc
Confidence 2 34678889999999999988876665544444444333
No 59
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=2.1e-12 Score=126.31 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=128.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+|||+|+||.+|+..|.++|.. .++.+|+|++++.+.+.+... ++..+++..++++++|+||+|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~------------~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP------------KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC------------CceEeCCHHHHHHhCCEEEEE
Confidence 5899999999999999999998721 245789999988887766421 134556788878899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~ 286 (458)
+|++.+.++++++. +.++++||++..|+..+ .+++.++.. ...+...|+.+.....| .+. +... .
T Consensus 69 v~p~~~~~vl~~l~--~~~~~~vis~~ag~~~~-------~l~~~~~~~--~~~~r~~P~~~~a~~~g-~t~--~~~~-~ 133 (258)
T PRK06476 69 VRPQIAEEVLRALR--FRPGQTVISVIAATDRA-------ALLEWIGHD--VKLVRAIPLPFVAERKG-VTA--IYPP-D 133 (258)
T ss_pred eCHHHHHHHHHHhc--cCCCCEEEEECCCCCHH-------HHHHHhCCC--CCEEEECCCChhhhCCC-CeE--ecCC-H
Confidence 99988999998863 46788999988776653 344444321 13466778766553333 222 3332 2
Q ss_pred HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (458)
Q Consensus 287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~ 366 (458)
+.++++|+..|..+...+. + .++.+....+ ..+.+...+.|+...+++.|++++...+
T Consensus 134 ---~~~~~l~~~lG~~~~~~~e-------~-~~d~~~a~~s-----------~~a~~~~~~~~~~~~~~~~Gl~~~~a~~ 191 (258)
T PRK06476 134 ---PFVAALFDALGTAVECDSE-------E-EYDLLAAASA-----------LMATYFGILETATGWLEEQGLKRQKARA 191 (258)
T ss_pred ---HHHHHHHHhcCCcEEECCh-------H-hccceeehhc-----------cHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5789999988877664322 1 1122211111 1223345788999999999999887654
No 60
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.49 E-value=5.7e-13 Score=132.45 Aligned_cols=166 Identities=13% Similarity=0.171 Sum_probs=112.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCC---CCCCCceEEeCCHHhhc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPE---QKLPENVIATTDAKTAL 197 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------g~~~~~~~~---~~l~~~i~a~~~~~ea~ 197 (458)
+||+|||+|.||..||..|+++| ++|++||++++.++.+.+. +........ .....++..++++++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 58999999999999999999999 9999999999988876542 110000000 00123467778888889
Q ss_pred CCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhc
Q 012720 198 LGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMN 273 (458)
Q Consensus 198 ~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~ 273 (458)
++||+||+|+|... ...++.++.+.+++++++++.+.++.+.+ +.+....+ .....++ .|.+..
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~-------l~~~~~~~~r~~g~h~~-~Pv~~~---- 147 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE-------IASFTKRPERVIAMHFF-NPVHKM---- 147 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCcccEEEEecC-CCcccC----
Confidence 99999999999754 45667788888888987755554676642 22222211 0112233 454321
Q ss_pred cCCeEEEEccC---CHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720 274 KLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVT 310 (458)
Q Consensus 274 g~~t~v~i~g~---d~e~~e~l~~lL~~~g~~v~~~~di~ 310 (458)
..+.+.++ +++.+++++++|+..|..+.+..|..
T Consensus 148 ---~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~ 184 (288)
T PRK09260 148 ---KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP 184 (288)
T ss_pred ---ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 23344444 78999999999999998887776654
No 61
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.49 E-value=3.7e-12 Score=124.86 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=129.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.|||+|||+|+||++|+..|.+++. ..++++++|+++.. + +....++.++++++|+||
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~--------------~~~~~~~~~~~~~~D~Vi 62 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P--------------FVYLQSNEELAKTCDIIV 62 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C--------------eEEeCChHHHHHhCCEEE
Confidence 3799999999999999999998862 23588888876421 1 123456677778999999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-c
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-S 283 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~-g 283 (458)
+|+|++++++++.++.+++.+ ..||++.+|+..+ .+++.++.. ...+...|+++..+..|. +.+... .
T Consensus 63 lavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~-------~l~~~~~~~--~~vvr~mPn~p~~~g~g~-t~i~~~~~ 131 (260)
T PTZ00431 63 LAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNLK-------TLEEMVGVE--AKIVRVMPNTPSLVGQGS-LVFCANNN 131 (260)
T ss_pred EEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccHH-------HHHHHcCCC--CeEEEECCCchhHhccee-EEEEeCCC
Confidence 999999999999999988764 5789999999864 344544431 124678999997765543 222222 2
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~ 363 (458)
.+.+..+.++.+|+..|..+...++.. +++...+|. . -+++...+..+..-+.+.|++.++
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v~E~~~---------d~~ta~~gs-------g---PA~~~~~~~al~~~~v~~Gl~~~~ 192 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEIKEKDM---------DIATAISGC-------G---PAYVFLFIESLIDAGVKNGLNRDV 192 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEEChHHc---------chhhhhcCC-------H---HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 356778999999999998887754321 221111121 1 233344444556667778888765
Q ss_pred ccc
Q 012720 364 ITG 366 (458)
Q Consensus 364 ~~~ 366 (458)
..+
T Consensus 193 a~~ 195 (260)
T PTZ00431 193 SKN 195 (260)
T ss_pred HHH
Confidence 544
No 62
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.9e-12 Score=117.44 Aligned_cols=195 Identities=10% Similarity=0.099 Sum_probs=134.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCCEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL 204 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiVi 204 (458)
|+|+.||+|.||..+..+|.+.| |+|..||++++.++++...+. ..++++++. +....+|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g--hdvV~yD~n~~av~~~~~~ga--------------~~a~sl~el~~~L~~pr~vW 64 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG--HDVVGYDVNQTAVEELKDEGA--------------TGAASLDELVAKLSAPRIVW 64 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC--CeEEEEcCCHHHHHHHHhcCC--------------ccccCHHHHHHhcCCCcEEE
Confidence 68999999999999999999999 999999999999999988763 233455554 45679999
Q ss_pred EcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 205 laVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
++||.. .+.++++++.+.+.+|.+||+-.|.-..++.+.. +.+.+. |..+.++....|+- +.....+++++
T Consensus 65 lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~-~~l~~k-gi~flD~GTSGG~~-----G~~~G~~lMiG- 136 (300)
T COG1023 65 LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRA-KLLAEK-GIHFLDVGTSGGVW-----GAERGYCLMIG- 136 (300)
T ss_pred EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHH-HHHHhc-CCeEEeccCCCCch-----hhhcCceEEec-
Confidence 999975 7999999999999999999998876665543322 223232 32222333333332 11223344445
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~ 360 (458)
++.+.++++.++|+..... ++ + ..++=.+|...=+|+.+|-+---+.++++|...+.+....|
T Consensus 137 G~~~a~~~~~pif~~lA~g----e~--G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD 199 (300)
T COG1023 137 GDEEAVERLEPIFKALAPG----ED--G--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFD 199 (300)
T ss_pred CcHHHHHHHHHHHHhhCcC----cC--c--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCC
Confidence 4899999999999863221 00 0 00001123344445666776677789999999999987655
No 63
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.45 E-value=3.4e-13 Score=111.56 Aligned_cols=93 Identities=26% Similarity=0.338 Sum_probs=77.1
Q ss_pred eEEEECcchHHHHHHHHHHhcC-CCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCCEEEE
Q 012720 129 KVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG-~~~~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (458)
||+|||+|+||.+++..|.++| .+++|.++ +|++++.+++.++.. +.++. +..++++++|+||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------------VQATADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------------TEEESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------------cccccCChHHhhccCCEEEE
Confidence 7999999999999999999987 34789955 999999988876531 23444 67888899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
|||.+.+.+++.++ +...+++++|++.+|
T Consensus 68 av~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVKPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999999 667789999999876
No 64
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.45 E-value=3.9e-12 Score=133.53 Aligned_cols=163 Identities=15% Similarity=0.242 Sum_probs=113.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+||| +|.||.++|..|.++| ++|++|+|+++.++.+.... ++..+++.++++.++|+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G--~~V~v~~r~~~~~~~~a~~~-------------gv~~~~~~~e~~~~aDvVIla 65 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG--FEVIVTGRDPKKGKEVAKEL-------------GVEYANDNIDAAKDADIVIIS 65 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC--CEEEEEECChHHHHHHHHHc-------------CCeeccCHHHHhccCCEEEEe
Confidence 6899998 7999999999999999 99999999987765554321 123455777788999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc-c
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA-S 283 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t~v~i~-g 283 (458)
+|...+.+++.++.+.++++++|++++. +-. ...+.+.+.++.. +.....+.||..+ ...|....+... +
T Consensus 66 vp~~~~~~vl~~l~~~l~~~~iViDvsS-vK~----~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~ 138 (437)
T PRK08655 66 VPINVTEDVIKEVAPHVKEGSLLMDVTS-VKE----RPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEK 138 (437)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEEccc-ccH----HHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCC
Confidence 9999999999999999999999999883 221 2234444444321 1111123345433 223443322222 1
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChHHH
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVTGV 312 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~ 312 (458)
.+.+.++.++++|+..|.++...+....+
T Consensus 139 ~~~~~~~~v~~ll~~~G~~v~~~~~e~HD 167 (437)
T PRK08655 139 RSNPWFDKVKNFLEKEGARVIVTSPEEHD 167 (437)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCHHHHH
Confidence 35788899999999999998876554433
No 65
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.45 E-value=2.8e-13 Score=121.34 Aligned_cols=115 Identities=18% Similarity=0.305 Sum_probs=87.5
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc
Q 012720 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (458)
Q Consensus 130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (458)
|+|+|+|+||+.+|.+|+++| ++|+++.|++ ..+.+++.|+......+...........+..+..+.+|+||+|||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 789999999999999999999 9999999999 8888988876433222111101112222332335789999999999
Q ss_pred ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720 210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (458)
Q Consensus 210 ~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg 253 (458)
.+++++++.+++++.+++.|+.++||++.. +.+.+.++
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~------~~l~~~~~ 115 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE------EVLAEYFP 115 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHH------HHHHCHST
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcH------HHHHHHcC
Confidence 999999999999999999999999999875 44555543
No 66
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.43 E-value=2.9e-12 Score=119.50 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=115.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
||+|+|+|+|+||.++|.+|+++| |+|++-+|+.+ ..+...+ .+.. .+... +.+++.+.+|+||+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag--~eV~igs~r~~~~~~a~a~-~l~~----------~i~~~-~~~dA~~~aDVVvL 66 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG--HEVIIGSSRGPKALAAAAA-ALGP----------LITGG-SNEDAAALADVVVL 66 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC--CeEEEecCCChhHHHHHHH-hhcc----------ccccC-ChHHHHhcCCEEEE
Confidence 589999999999999999999999 99999865544 3333333 2211 12222 56678899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCc----c------hhhhHHHHHHHHhCCCCCCEEEEECcc--cHHHHhc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL----N------TLRMMSQIIPQALRNPRQPFIALSGPS--FALELMN 273 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~----~------t~~~l~e~l~~~lg~~~~~~~vl~gP~--~a~ei~~ 273 (458)
+||..++.+++.++...+. |++||+.+|.+.+ . .....++.+.+.++... ++.+-+ .+..+..
T Consensus 67 AVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~ 141 (211)
T COG2085 67 AVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLAD 141 (211)
T ss_pred eccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhcc
Confidence 9999999999999998887 8999999997521 1 12235677777776531 221111 1112111
Q ss_pred ----cCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCCh
Q 012720 274 ----KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV 309 (458)
Q Consensus 274 ----g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di 309 (458)
+....+.+++.|.+..+.+.++.++.||+....+.+
T Consensus 142 ~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L 181 (211)
T COG2085 142 LAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPL 181 (211)
T ss_pred CCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence 122345678888889999999999999998765543
No 67
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=4.8e-12 Score=125.77 Aligned_cols=198 Identities=20% Similarity=0.233 Sum_probs=126.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc--CCCccCCCCC---------CCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH--CNCRYFPEQK---------LPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g--~~~~~~~~~~---------l~~~i~a~~~~~e 195 (458)
++||+|||+|.||..+|..|+++| ++|++||++++.++.+.+.- ....+.+... ...++..++|.++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 579999999999999999999999 99999999998777665421 0011111111 1245778889988
Q ss_pred hcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHH
Q 012720 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALEL 271 (458)
Q Consensus 196 a~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei 271 (458)
+++++|+||.|+|.. ...++++++.+.++++++|++.+.++.+. + +.+.+..+. .+. -...|.+
T Consensus 81 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~------~-~~~~~~~~~-r~vg~Hf~~p~~---- 148 (287)
T PRK08293 81 AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS------Q-FAEATGRPE-KFLALHFANEIW---- 148 (287)
T ss_pred HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH------H-HHhhcCCcc-cEEEEcCCCCCC----
Confidence 889999999999965 57788889989898888887666555442 1 223222210 111 1122221
Q ss_pred hccCCeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720 272 MNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (458)
Q Consensus 272 ~~g~~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~-~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E 349 (458)
......++. ...+++.++++.++++..|...... .|..+-. ...+....++|
T Consensus 149 -~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi-------------------------~nRi~~~~~~e 202 (287)
T PRK08293 149 -KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYI-------------------------LNSLLVPFLSA 202 (287)
T ss_pred -cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHh-------------------------HHHHHHHHHHH
Confidence 111111221 2357889999999999999875544 3543211 12344567788
Q ss_pred HHHHHHHcCCCcccc
Q 012720 350 IRWLATKMGAKPATI 364 (458)
Q Consensus 350 ~~~la~a~Gi~~~~~ 364 (458)
++.+.+.--.+++++
T Consensus 203 a~~l~~~g~a~~~~i 217 (287)
T PRK08293 203 ALALWAKGVADPETI 217 (287)
T ss_pred HHHHHHcCCCCHHHH
Confidence 888877533456554
No 68
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.41 E-value=1e-11 Score=123.76 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=111.7
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-CCC-ccCCCCCC--------CCceEEeCCH
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-CNC-RYFPEQKL--------PENVIATTDA 193 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-~~~-~~~~~~~l--------~~~i~a~~~~ 193 (458)
|+..+||+|||+|.||..||..|+++| ++|++||++++.++.+.+.- .+. .+.....+ ..++..+++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 78 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL 78 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH
Confidence 455689999999999999999999999 99999999998877643210 000 00000011 1346677787
Q ss_pred HhhcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHH
Q 012720 194 KTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFAL 269 (458)
Q Consensus 194 ~ea~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~ 269 (458)
++ ++++|+||+|+|.. ....++.++.+.++++++|++.+.|+... .+.+.+..+. ..+.++ .|....
T Consensus 79 ~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s-------~la~~~~~~~r~~g~h~~-~p~~~~ 149 (292)
T PRK07530 79 ED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT-------RLASATDRPERFIGIHFM-NPVPVM 149 (292)
T ss_pred HH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcccEEEeecc-CCcccC
Confidence 64 78999999999974 35677788989999999988766666542 2333322110 011122 232211
Q ss_pred HHhccCCeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720 270 ELMNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVT 310 (458)
Q Consensus 270 ei~~g~~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~di~ 310 (458)
+. ..++. .+.+++.++++.++|+..|..+.+..|..
T Consensus 150 ----~~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p 186 (292)
T PRK07530 150 ----KL-VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP 186 (292)
T ss_pred ----ce-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Confidence 11 11222 24678999999999999998877766654
No 69
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.40 E-value=9.5e-12 Score=128.16 Aligned_cols=182 Identities=15% Similarity=0.193 Sum_probs=124.8
Q ss_pred ccchhhHHhhhhcccccchhhcccc-chhhcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012720 96 DRRKIVKVAWEKLVRWSRTWRSKAK-TDILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173 (458)
Q Consensus 96 ~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~ 173 (458)
-+....+.-|..++++++....+.+ ..++..++||+||| +|.||..||..|.++| ++|++|+|+..
T Consensus 66 l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G--~~V~~~d~~~~---------- 133 (374)
T PRK11199 66 VPPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG--YQVRILEQDDW---------- 133 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCC--CeEEEeCCCcc----------
Confidence 3444456678888877776665543 44554578999999 9999999999999999 99999998531
Q ss_pred CCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (458)
Q Consensus 174 ~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg 253 (458)
+++++++.+||+||+|+|.....+++.++.+ ++++++|++++. +-. .+.+.+.+..+
T Consensus 134 -----------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK~----~~~~~~~~~~~ 190 (374)
T PRK11199 134 -----------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VKN----APLQAMLAAHS 190 (374)
T ss_pred -----------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-ccH----HHHHHHHHhCC
Confidence 1445667899999999999888999999988 889999999863 322 12223333322
Q ss_pred CCCCCEEEEECcccHHHHhccCCeEEEEccC-CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHH
Q 012720 254 NPRQPFIALSGPSFALELMNKLPTAMVVASK-DRKLANAVQQLLASKHLRISTSSDVTGVEIAG 316 (458)
Q Consensus 254 ~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~-d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~k 316 (458)
..+.....+.||.... ..+. .+++.++ +++.++.+.++++..|.++...+.-..+...+
T Consensus 191 ~~fvg~HPm~G~~~~~--~~~~--~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a 250 (374)
T PRK11199 191 GPVLGLHPMFGPDVGS--LAKQ--VVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMA 250 (374)
T ss_pred CCEEeeCCCCCCCCcc--cCCC--EEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHH
Confidence 2222233455654321 1222 2344443 56788999999999999988876554444433
No 70
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.39 E-value=1.6e-12 Score=129.52 Aligned_cols=170 Identities=19% Similarity=0.225 Sum_probs=109.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh------cCCC----ccCCCC---CCCCceEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK------HCNC----RYFPEQ---KLPENVIATTDA 193 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~------g~~~----~~~~~~---~l~~~i~a~~~~ 193 (458)
.+||+|||+|.||..+|..|+++| ++|++||++++.++...+. ++.. ...... .+..++..+++.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 468999999999999999999999 9999999999887654321 1100 000000 012345566676
Q ss_pred HhhcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCE-EEEECcccHHH
Q 012720 194 KTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFALE 270 (458)
Q Consensus 194 ~ea~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~-~vl~gP~~a~e 270 (458)
++++++|+||+|+|.+. ..+++.++.+.+++++++++.++|+... .+.+.+..+..-+ .....|....
T Consensus 81 -~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~-------~la~~~~~~~r~ig~hf~~P~~~~- 151 (291)
T PRK06035 81 -ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA-------EIATALERKDRFIGMHWFNPAPVM- 151 (291)
T ss_pred -HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH-------HHHhhcCCcccEEEEecCCCcccC-
Confidence 46799999999999764 6778888988899999999888887653 2223322210000 1111222111
Q ss_pred HhccCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720 271 LMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (458)
Q Consensus 271 i~~g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~ 311 (458)
+.. .++.+ .-+++.++++.++++..|..+....|..+
T Consensus 152 ---~~v-Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pg 189 (291)
T PRK06035 152 ---KLI-EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPG 189 (291)
T ss_pred ---ccE-EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 011 11111 13688999999999999988887766543
No 71
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.39 E-value=1.3e-11 Score=123.79 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=110.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+||+|||+|.||..+|..|.++|..++|++|+|+++..+.+++.|.. .....+.+++++++|+||+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~------------~~~~~~~~~~~~~aDvViia 73 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG------------DRVTTSAAEAVKGADLVILC 73 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC------------ceecCCHHHHhcCCCEEEEC
Confidence 468999999999999999999988334899999999888777665421 12334666778899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEEC----------cccHH-HHhccC
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG----------PSFAL-ELMNKL 275 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~g----------P~~a~-ei~~g~ 275 (458)
+|.....++++++.+.++++++|+++. ++... ..+.+.+.++. .+.++.+ |..+. +...|.
T Consensus 74 vp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~~----~~~~~~~~~~~---~~~~v~~hPm~g~e~~G~~~a~~~l~~g~ 145 (307)
T PRK07502 74 VPVGASGAVAAEIAPHLKPGAIVTDVG-SVKAS----VIAAMAPHLPE---GVHFIPGHPLAGTEHSGPDAGFAELFENR 145 (307)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEeCc-cchHH----HHHHHHHhCCC---CCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence 999888999999988888888887764 33322 12223332221 1122322 22111 223343
Q ss_pred CeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720 276 PTAMVV-ASKDRKLANAVQQLLASKHLRISTSSD 308 (458)
Q Consensus 276 ~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~d 308 (458)
...+.. .+.+.+.++.+.++|+..|.+++..+.
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 179 (307)
T PRK07502 146 WCILTPPEGTDPAAVARLTAFWRALGARVEEMDP 179 (307)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 332222 245678899999999999998877543
No 72
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.38 E-value=2.7e-11 Score=120.03 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=125.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~-----------l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (458)
++||+|||+|.||..+|..|+++| ++|++||++++.++. +.+.|..... .......+++.+++.++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITGTTDLDD 79 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH
Confidence 568999999999999999999999 999999999987753 2222210000 00001124667778765
Q ss_pred hcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhc
Q 012720 196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN 273 (458)
Q Consensus 196 a~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~ 273 (458)
+++||+||+|+|.+. ..+++.++.++++++++|++.+.|+... .+.+.++.+. . .+..-|..+.++..
T Consensus 80 -~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~-------~la~~~~~~~-r-~ig~h~~~P~~~~~ 149 (282)
T PRK05808 80 -LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT-------ELAAATKRPD-K-VIGMHFFNPVPVMK 149 (282)
T ss_pred -hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHHhhCCCc-c-eEEeeccCCcccCc
Confidence 789999999999643 3688899999999999998888777653 2333333211 1 11111222222111
Q ss_pred cCCeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH
Q 012720 274 KLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352 (458)
Q Consensus 274 g~~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~ 352 (458)
+. . ++. .+.+++..+.+.++|+..|..+....|..+.. ...++...++|+..
T Consensus 150 ~v-e-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i-------------------------~~Ri~~~~~~ea~~ 202 (282)
T PRK05808 150 LV-E-IIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFV-------------------------VNRILIPMINEAIF 202 (282)
T ss_pred cE-E-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChH-------------------------HHHHHHHHHHHHHH
Confidence 11 1 222 23578999999999999998887766654311 12345567788888
Q ss_pred HHHHcCC-Ccccc
Q 012720 353 LATKMGA-KPATI 364 (458)
Q Consensus 353 la~a~Gi-~~~~~ 364 (458)
+.+. |+ +++++
T Consensus 203 ~~~~-gv~~~~di 214 (282)
T PRK05808 203 VLAE-GVATAEDI 214 (282)
T ss_pred HHHh-CCCCHHHH
Confidence 7764 43 44443
No 73
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.37 E-value=5.6e-11 Score=118.58 Aligned_cols=170 Identities=17% Similarity=0.249 Sum_probs=108.2
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------hhcCCCccCCCCCCCCceEEeCC
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTD 192 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~-----------~~g~~~~~~~~~~l~~~i~a~~~ 192 (458)
|+.++||+|||+|.||..||..|+.+| ++|++||++++.++... +.|.-..... ......+...++
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~ 77 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEA-DATLGRIRCTTN 77 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHhceEeeCC
Confidence 445678999999999999999999999 99999999998765322 2221000000 000112445556
Q ss_pred HHhhcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccH
Q 012720 193 AKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFA 268 (458)
Q Consensus 193 ~~ea~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a 268 (458)
.+ ++++||+||+|||. .....++.++.+.++++++|++.+.|+.+.+ +.+.++.+. ..+.+...|..
T Consensus 78 ~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~-------l~~~~~~~~r~~g~h~~~pp~~- 148 (295)
T PLN02545 78 LE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR-------LASATQRPQQVIGMHFMNPPPI- 148 (295)
T ss_pred HH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCcceEEEeccCCccc-
Confidence 64 57999999999994 4466677888888999998887666776532 223222210 11112222211
Q ss_pred HHHhccCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720 269 LELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVT 310 (458)
Q Consensus 269 ~ei~~g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~ 310 (458)
+....++.+ ..+++.+++++++|+..|..+.+..|..
T Consensus 149 -----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~ 186 (295)
T PLN02545 149 -----MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP 186 (295)
T ss_pred -----CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 122222222 2478899999999999998887766643
No 74
>PLN02256 arogenate dehydrogenase
Probab=99.37 E-value=3.9e-11 Score=120.07 Aligned_cols=211 Identities=14% Similarity=0.099 Sum_probs=127.0
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCE
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADY 202 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDi 202 (458)
.+++|||+|||+|.||..+|..|.+.| ++|++|+++... +...+.| +...++.++++ .++|+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G--~~V~~~d~~~~~-~~a~~~g--------------v~~~~~~~e~~~~~aDv 95 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQG--HTVLATSRSDYS-DIAAELG--------------VSFFRDPDDFCEEHPDV 95 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECccHH-HHHHHcC--------------CeeeCCHHHHhhCCCCE
Confidence 345689999999999999999999988 899999998642 2233222 22345777765 47999
Q ss_pred EEEcCccccHHHHHHhh-hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEE
Q 012720 203 CLHAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAM 279 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i-~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t~v 279 (458)
||+|||...+.++++++ .+.++++++|+++..+= ....+.+.+.++.. +.....+.|+........+.. +
T Consensus 96 Vilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK-----~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~--~ 168 (304)
T PLN02256 96 VLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVK-----EFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP--F 168 (304)
T ss_pred EEEecCHHHHHHHHHhhhhhccCCCCEEEecCCch-----HHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe--E
Confidence 99999999999999998 67788999999987421 12234455544321 111111223332211122222 1
Q ss_pred EEc-------cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHH---HHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720 280 VVA-------SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (458)
Q Consensus 280 ~i~-------g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~ka---lkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E 349 (458)
++. ..+++..+.+.++++..|.++...+--..++...+ +.++++.+. .... .. ...+...++..
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L--~~~~-~~---~~~~~~~gfrd 242 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRIL--GKME-LE---STPINTKGYET 242 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHH--HHcC-Cc---ccccccccHHH
Confidence 122 23567889999999999999887665444444332 233332221 1111 00 12344456677
Q ss_pred HHHHHHHc-CCCcccc
Q 012720 350 IRWLATKM-GAKPATI 364 (458)
Q Consensus 350 ~~~la~a~-Gi~~~~~ 364 (458)
+.+++.+. ..+|+.+
T Consensus 243 ~tria~r~~~~~p~lw 258 (304)
T PLN02256 243 LLRLVENTSSDSFDLY 258 (304)
T ss_pred HHHHHHhhcCCCHHHH
Confidence 77777532 3445433
No 75
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.36 E-value=8.5e-12 Score=127.92 Aligned_cols=164 Identities=17% Similarity=0.233 Sum_probs=107.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
+||+|||+|.||..||..|.++| ++|.+|++++...+.....+.... -..+++.++++++||+||+||
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARALGFGVI----------DELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHhcCCCC----------cccccCHHHHhcCCCEEEEeC
Confidence 47999999999999999999999 899999988765544443332110 013346777889999999999
Q ss_pred ccccHHHHHHhhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEEC-----cccHH-HHhccCCeE
Q 012720 208 PVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSG-----PSFAL-ELMNKLPTA 278 (458)
Q Consensus 208 p~~~v~~vl~~i~~-~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~g-----P~~a~-ei~~g~~t~ 278 (458)
|...+.++++++.+ .++++++|.++. ++... +.+.+.+.++.. +.....+.| +..+. .+..+..+.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~~----i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i 143 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVG-SVKGA----ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWV 143 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCc-cccHH----HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence 99999999999987 478887777665 44322 223333332211 001011222 22222 334555554
Q ss_pred EEEcc-CCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720 279 MVVAS-KDRKLANAVQQLLASKHLRISTSSD 308 (458)
Q Consensus 279 v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~d 308 (458)
++... .+.+.++.++++|+..|..+...+.
T Consensus 144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~ 174 (359)
T PRK06545 144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDA 174 (359)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 43332 4678899999999999988865543
No 76
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.35 E-value=3e-11 Score=121.43 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l-~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||+|+||.++|.+|.+.| ++|++++++....... .+.| +... +.+++++.+|+|++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG--~~Vvv~~r~~~~s~~~A~~~G--------------~~~~-s~~eaa~~ADVVvL 79 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG--VDVVVGLREGSKSWKKAEADG--------------FEVL-TVAEAAKWADVIMI 79 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC--CEEEEEECCchhhHHHHHHCC--------------CeeC-CHHHHHhcCCEEEE
Confidence 478999999999999999999999 8999988775433322 2223 2233 77888999999999
Q ss_pred cCccccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-------HhccCCe
Q 012720 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-------LMNKLPT 277 (458)
Q Consensus 206 aVp~~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e-------i~~g~~t 277 (458)
+||.....+++ +++.+.++++++| ++..|+.... .....+.. .+ .++..|+.+.+ .+.|.+.
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~-------~~~~p~~~-~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~ 149 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF-------GQIVPPAD-VD-VIMVAPKGPGHLVRREYEEGGGVPC 149 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh-------ceeccCCC-Cc-EEEeCCCCCchhhhhhhhcCCCceE
Confidence 99998889998 7799999999887 5555877542 22222221 22 45566776655 4455544
Q ss_pred EEEEcc-CCHHHHHHHHHHHhcCCCe
Q 012720 278 AMVVAS-KDRKLANAVQQLLASKHLR 302 (458)
Q Consensus 278 ~v~i~g-~d~e~~e~l~~lL~~~g~~ 302 (458)
.+.+.. .+.+..+.+..++...|..
T Consensus 150 l~av~~d~t~~a~~~a~~l~~aiG~~ 175 (330)
T PRK05479 150 LIAVHQDASGNAKDLALAYAKGIGGT 175 (330)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 331222 2367788889999877655
No 77
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.34 E-value=6.6e-11 Score=126.36 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=126.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l-----------~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (458)
.+||+|||+|.||..||..|+++| ++|++||++++.+++. .+.|.-... .....-..+..++++++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE-QADAALARLRPVEALAD 83 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH
Confidence 468999999999999999999999 9999999999987763 222210000 00001124677788876
Q ss_pred hcCCCCEEEEcCcc-ccHHH-HHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012720 196 ALLGADYCLHAMPV-QFSSS-FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL 271 (458)
Q Consensus 196 a~~~aDiVilaVp~-~~v~~-vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei 271 (458)
+.+||+||.||+. ..++. ++.++...+++++++.+.+.++.+. .+.+.+..+ .....+ ..|....
T Consensus 84 -~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~-------~la~~~~~p~r~~G~hf-f~Pa~v~-- 152 (507)
T PRK08268 84 -LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT-------AIAAALKHPERVAGLHF-FNPVPLM-- 152 (507)
T ss_pred -hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEee-cCCcccC--
Confidence 5799999999996 34554 4466777788888887655577764 133332221 011222 2332221
Q ss_pred hccCCeEEEEcc---CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720 272 MNKLPTAMVVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (458)
Q Consensus 272 ~~g~~t~v~i~g---~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~ 348 (458)
..+.+.+ .+++.++++.++++..|....+..|..|- +.| .++...++
T Consensus 153 -----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rll~~~~~ 202 (507)
T PRK08268 153 -----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVN--------------------RAARPYYT 202 (507)
T ss_pred -----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHH--------------------HHHHHHHH
Confidence 1233333 47899999999999999887776664331 111 12234778
Q ss_pred HHHHHHHHcCCCcccccc
Q 012720 349 EIRWLATKMGAKPATITG 366 (458)
Q Consensus 349 E~~~la~a~Gi~~~~~~~ 366 (458)
|+..+++..|++++++.+
T Consensus 203 Ea~~l~~~g~~~~~~iD~ 220 (507)
T PRK08268 203 EALRVLEEGVADPATIDA 220 (507)
T ss_pred HHHHHHHcCCCCHHHHHH
Confidence 888888887787766554
No 78
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.34 E-value=1.6e-10 Score=116.00 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=106.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+||+|||+|+||.++|..|.+.| ++|+++++. .+..+.+.+.| +... +..++++++|+|++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG--~~Viv~~~~~~~~~~~a~~~G--------------v~~~-s~~ea~~~ADiVvL 65 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG--LNVIVGLRKGGASWKKATEDG--------------FKVG-TVEEAIPQADLIMN 65 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC--CeEEEEECcChhhHHHHHHCC--------------CEEC-CHHHHHhcCCEEEE
Confidence 478999999999999999999999 888876654 34445554433 2333 56778899999999
Q ss_pred cCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-H------hccCCe
Q 012720 206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L------MNKLPT 277 (458)
Q Consensus 206 aVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e-i------~~g~~t 277 (458)
+||++ +...+++++.+.++++. +|++.-|+... .+...++.. . -.++..|+.+.+ + +.|.+.
T Consensus 66 aVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~-------~~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~ 135 (314)
T TIGR00465 66 LLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIH-------FVQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPT 135 (314)
T ss_pred eCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHh-------hccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeE
Confidence 99988 67767778988888775 78888898864 233444431 1 257788888876 3 556544
Q ss_pred EEEEc-cCCHHHHHHHHHHHhcCCCe
Q 012720 278 AMVVA-SKDRKLANAVQQLLASKHLR 302 (458)
Q Consensus 278 ~v~i~-g~d~e~~e~l~~lL~~~g~~ 302 (458)
.+.+. ..+.+..+.+..+|+..|..
T Consensus 136 l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 136 LIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 32122 23567778899999987755
No 79
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.34 E-value=4.3e-11 Score=120.38 Aligned_cols=198 Identities=15% Similarity=0.165 Sum_probs=124.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC---CCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC---NCRYFPEQKLPENVIATTDAKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~---g~---~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (458)
.+||+|||+|.||..||..|+.+| ++|++||++++..+++.+. .. ....+.....+..+..++++++++++|
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a 84 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA 84 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC
Confidence 478999999999999999999999 9999999998766544321 00 000000111234567778998889999
Q ss_pred CEEEEcCccc-c-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHHhccCC
Q 012720 201 DYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELMNKLP 276 (458)
Q Consensus 201 DiVilaVp~~-~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei~~g~~ 276 (458)
|+||.|+|.. . ...++.++.+.++++++|.+.+.++... .+.+.+..+. .+. -...|.+... .
T Consensus 85 DlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s-------~la~~~~~p~-R~~g~HffnP~~~~p-----L 151 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT-------DFYARATHPE-RCVVGHPFNPVYLLP-----L 151 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHH-------HHHHhcCCcc-cEEEEecCCccccCc-----e
Confidence 9999999963 3 5566688999999999776666555432 2333333221 111 2234433221 1
Q ss_pred eEEEEcc-CCHHHHHHHHHHHhcCCCeEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Q 012720 277 TAMVVAS-KDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354 (458)
Q Consensus 277 t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~-~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la 354 (458)
..++.+. -+++.++++.+++...|...... .|+.|-. . ..+....++|++.+.
T Consensus 152 VEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi-----~--------------------NRl~~a~~~EA~~lv 206 (321)
T PRK07066 152 VEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFI-----A--------------------DRLLEALWREALHLV 206 (321)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHH-----H--------------------HHHHHHHHHHHHHHH
Confidence 1122222 36889999999999999776554 4654311 1 123445677777776
Q ss_pred HHcCCCcccc
Q 012720 355 TKMGAKPATI 364 (458)
Q Consensus 355 ~a~Gi~~~~~ 364 (458)
+.-..+++++
T Consensus 207 ~eGvas~edI 216 (321)
T PRK07066 207 NEGVATTGEI 216 (321)
T ss_pred HhCCCCHHHH
Confidence 6543555544
No 80
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.34 E-value=4.5e-11 Score=127.34 Aligned_cols=196 Identities=15% Similarity=0.147 Sum_probs=126.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCCCCCCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQKLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~-----------~g~~~~~~~~~~l~~~i~a~~~~~e 195 (458)
.+||+|||+|.||..||..|+++| ++|++||++++.+++..+ .|.-... .......+++.++++++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~ 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE-ECERTLKRLIPVTDLHA 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhccEEeCCHHH
Confidence 468999999999999999999999 999999999988765322 1210000 00011235677888876
Q ss_pred hcCCCCEEEEcCcc-cc-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012720 196 ALLGADYCLHAMPV-QF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL 271 (458)
Q Consensus 196 a~~~aDiVilaVp~-~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei 271 (458)
+.+||+||.|++. .+ ...++.++.+.++++++|.+.+.++.+. . +.+.+..+ ...+.+ ..|....
T Consensus 82 -l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~---~----iA~~~~~p~r~~G~HF-f~Papv~-- 150 (503)
T TIGR02279 82 -LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT---A----IAAGLARPERVAGLHF-FNPAPVM-- 150 (503)
T ss_pred -hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH---H----HHHhcCcccceEEEec-cCccccC--
Confidence 5799999999996 34 4445667888888888877666566553 1 22322221 111112 2222211
Q ss_pred hccCCeEEEEccC---CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720 272 MNKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (458)
Q Consensus 272 ~~g~~t~v~i~g~---d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~ 348 (458)
..+.+.++ +++.++++.++++..|....+..|..|- +.| .++...++
T Consensus 151 -----~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rl~~~~~~ 200 (503)
T TIGR02279 151 -----ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVN--------------------RVARPYYA 200 (503)
T ss_pred -----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHH--------------------HHHHHHHH
Confidence 13344444 7899999999999999888776664431 111 12245778
Q ss_pred HHHHHHHHcCCCcccccc
Q 012720 349 EIRWLATKMGAKPATITG 366 (458)
Q Consensus 349 E~~~la~a~Gi~~~~~~~ 366 (458)
|+..+++..+++++++..
T Consensus 201 EA~~l~e~g~a~~~~ID~ 218 (503)
T TIGR02279 201 EALRALEEQVAAPAVLDA 218 (503)
T ss_pred HHHHHHHcCCCCHHHHHH
Confidence 888888888887766544
No 81
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=7.7e-11 Score=117.94 Aligned_cols=209 Identities=12% Similarity=0.132 Sum_probs=142.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---hcCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a~~~aDiV 203 (458)
.+.||+||+|.||.-+|.+.+++| +.|.+|+|+.++.+.+.++....+ ++..+.+++| .++...-|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G--~~VavyNRt~~ktd~f~~~~~~~k---------~i~~~~sieefV~~Le~PRkI 71 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHG--YTVAVYNRTTEKTDEFLAERAKGK---------NIVPAYSIEEFVASLEKPRKI 71 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcC--ceEEEEeCCHHHHHHHHHhCccCC---------CccccCcHHHHHHHhcCCceE
Confidence 467999999999999999999999 999999999999999877543211 2333345554 46788999
Q ss_pred EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc-HHHHhccCCeEEEE
Q 012720 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-ALELMNKLPTAMVV 281 (458)
Q Consensus 204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~-a~ei~~g~~t~v~i 281 (458)
+++|++ ..++.++++|++++.+|.+||+-.|....+|.++..+.- +. | +.++..-.. +++.+...|+ ++
T Consensus 72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~-~~-G-----i~FvG~GVSGGEeGA~~GPS--iM 142 (473)
T COG0362 72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELS-EK-G-----ILFVGMGVSGGEEGARHGPS--IM 142 (473)
T ss_pred EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHH-hc-C-----CeEEeccccccccccccCCC--cC
Confidence 999998 678999999999999999999999988888765544332 22 3 223322222 2333333454 45
Q ss_pred ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH-cCCC
Q 012720 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK-MGAK 360 (458)
Q Consensus 282 ~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a-~Gi~ 360 (458)
.|++++..+.++++|.+..-++. ++. ...|-+ .-|...=+|..+|-.---=.+.++|+..+.+. +|.+
T Consensus 143 pGG~~eay~~v~pil~~IaAk~~--g~p-Cc~~iG--------~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls 211 (473)
T COG0362 143 PGGQKEAYELVAPILTKIAAKVD--GEP-CCTWIG--------PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLS 211 (473)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcC--CCC-ceeeEC--------CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCC
Confidence 67789999999999985432221 111 000100 01334445666665555557889999999988 7887
Q ss_pred cccccc
Q 012720 361 PATITG 366 (458)
Q Consensus 361 ~~~~~~ 366 (458)
.+.+.+
T Consensus 212 ~~ei~~ 217 (473)
T COG0362 212 AEEIAE 217 (473)
T ss_pred HHHHHH
Confidence 665543
No 82
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.29 E-value=1.3e-10 Score=114.77 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=111.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH-HhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-KTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~-~ea~~~aDiVil 205 (458)
+++|+|+|+|.||..||+.|.++| +.|.+++++...........+...+ ..+.+. .+++.++|+||+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g--~~v~i~g~d~~~~~~~~a~~lgv~d----------~~~~~~~~~~~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG--LVVRIIGRDRSAATLKAALELGVID----------ELTVAGLAEAAAEADLVIV 70 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC--CeEEEEeecCcHHHHHHHhhcCccc----------ccccchhhhhcccCCEEEE
Confidence 589999999999999999999999 8887777665433322222222111 111232 456778999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--CCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALSGPSFALELMNKLPTAMVVAS 283 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~--~~~~~~vl~gP~~a~ei~~g~~t~v~i~g 283 (458)
|||-..+.++++++.+.+++|++|++++. + ...+.+.+.+..+. ...+...+.||..-.+...+....+....
T Consensus 71 avPi~~~~~~l~~l~~~l~~g~iv~Dv~S-~----K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 71 AVPIEATEEVLKELAPHLKKGAIVTDVGS-V----KSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred eccHHHHHHHHHHhcccCCCCCEEEeccc-c----cHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCC
Confidence 99999999999999999999999998873 1 12334555555433 11222234566301122233332222222
Q ss_pred -CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720 284 -KDRKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (458)
Q Consensus 284 -~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~ 315 (458)
.+.+.++++.++++..|-++...+.-..+...
T Consensus 146 ~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~ 178 (279)
T COG0287 146 GTEKEWVEEVKRLWEALGARLVEMDAEEHDRVM 178 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHH
Confidence 34678999999999999888877654444433
No 83
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.28 E-value=3.8e-10 Score=111.50 Aligned_cols=208 Identities=16% Similarity=0.136 Sum_probs=126.9
Q ss_pred CeEEEECcchH--------------------HHHHHHHHHhcCCCCeEEEEeCCHHHH-----HHHHhhcCCCccCCCCC
Q 012720 128 NKVVVLGGGSF--------------------GTAMAAHVANKKSQLKVYMLMRDPAVC-----QSINEKHCNCRYFPEQK 182 (458)
Q Consensus 128 ~kI~IIGaG~m--------------------G~~iA~~La~aG~~~~V~v~~r~~~~~-----e~l~~~g~~~~~~~~~~ 182 (458)
|||.|.|+|+- |.+||.+|+++| |+|++|||+++.+ +.+.+.|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG--heV~V~Drnrsa~e~e~~e~LaeaG---------- 68 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG--HDVVLAEPNREFMSDDLWKKVEDAG---------- 68 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhHHHHHCC----------
Confidence 68999999873 889999999999 9999999987654 3455544
Q ss_pred CCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh--CCCCCCE
Q 012720 183 LPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL--RNPRQPF 259 (458)
Q Consensus 183 l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~l--g~~~~~~ 259 (458)
+..++++.++++++|+||+|+|.. ++++++.++.+.+++|++||+++ ++++++. ...+++.+ ++. ++
T Consensus 69 ----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~S-TIsP~t~---~~~~e~~l~~~r~--d~ 138 (341)
T TIGR01724 69 ----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTC-TVSPVVL---YYSLEKILRLKRT--DV 138 (341)
T ss_pred ----CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECC-CCCHHHH---HHHHHHHhhcCcc--cc
Confidence 346668889999999999999964 58899888999999999999998 6777543 33343322 221 12
Q ss_pred EEEEC-----cccHHH---HhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHH--HHHHHHHHHHHHHHH
Q 012720 260 IALSG-----PSFALE---LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS-DVTGVE--IAGALKNVLAIAAGI 328 (458)
Q Consensus 260 ~vl~g-----P~~a~e---i~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~--~~kalkNi~ai~~G~ 328 (458)
.+.+- |+...+ +..|... .--+-.+++..+++.++.++.+...+..+ |+.+.. .+.++--+ ...|+
T Consensus 139 ~v~s~HP~~vP~~~~~~~~~~~~~~~-~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta~--~~~gi 215 (341)
T TIGR01724 139 GISSMHPAAVPGTPQHGHYVIGGKPT-AGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTAV--ALAGV 215 (341)
T ss_pred CeeccCCCCCCCCCCCceeeeccccc-cccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH--HHHHH
Confidence 22111 221111 0011110 00111468899999999999887766543 333221 12211110 01233
Q ss_pred Hhcc----c-CCCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012720 329 VVGM----N-LGNN--SMAALVAQGCSEIRWLATKMGAK 360 (458)
Q Consensus 329 ~~~~----k-l~~n--~~~al~~~~l~E~~~la~a~Gi~ 360 (458)
++=. + ++.. ..-..+...+.-+..+-+..|++
T Consensus 216 l~y~~~~t~i~~ap~~~~~~~~~~~l~~~a~l~~~~Gi~ 254 (341)
T TIGR01724 216 LDYYYVGTQIINAPKEMIEKQILMTLQTMASLVETSGVE 254 (341)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2111 1 2222 22344556666777788888876
No 84
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.27 E-value=5.4e-11 Score=118.25 Aligned_cols=197 Identities=14% Similarity=0.163 Sum_probs=121.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l-----------~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (458)
+.||+|||+|.||..||..|+.+| ++|++||++++.+++. .+.|.-..- .......+++.+++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~- 80 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER-ERDAALARLRFTTDLG- 80 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-
Confidence 458999999999999999999999 9999999999887662 222211000 0001123567788885
Q ss_pred hcCCCCEEEEcCccc-c-HHHHHHhhhhcC-CCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHH
Q 012720 196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYV-DPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALEL 271 (458)
Q Consensus 196 a~~~aDiVilaVp~~-~-v~~vl~~i~~~l-~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei 271 (458)
++++||+||.|+|.. . ...++..+.+.+ ++++++++.+.++.... +......+..- ......|.+..
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~-------la~~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK-------LAAATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCccEEEEecCCCcccC--
Confidence 479999999999963 3 445556777777 78999988886665531 22222211010 01122332221
Q ss_pred hccCCeEEEEccCCHHHHHHHHHHHh-cCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720 272 MNKLPTAMVVASKDRKLANAVQQLLA-SKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (458)
Q Consensus 272 ~~g~~t~v~i~g~d~e~~e~l~~lL~-~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~ 350 (458)
+....+.....+++.++++.+++. ..|..+....|..|-. ...+....++|+
T Consensus 152 --~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi-------------------------~nRi~~~~~~Ea 204 (286)
T PRK07819 152 --PLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFV-------------------------VNALLVPYLLSA 204 (286)
T ss_pred --ceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCChH-------------------------HHHHHHHHHHHH
Confidence 111222223457899999999987 4787766555543211 123445677888
Q ss_pred HHHHHHcCC-Ccccc
Q 012720 351 RWLATKMGA-KPATI 364 (458)
Q Consensus 351 ~~la~a~Gi-~~~~~ 364 (458)
.++.+ .|+ +++++
T Consensus 205 ~~ll~-eGv~~~~dI 218 (286)
T PRK07819 205 IRMVE-SGFATAEDI 218 (286)
T ss_pred HHHHH-hCCCCHHHH
Confidence 88776 453 44443
No 85
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.20 E-value=3.4e-11 Score=105.00 Aligned_cols=96 Identities=26% Similarity=0.298 Sum_probs=67.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+||+|||+|++|..++..|.++| |.|.. |+|+.+..+.+...- ++ ....+++|.+.++|++|+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag--~~v~~v~srs~~sa~~a~~~~------~~-------~~~~~~~~~~~~aDlv~i 74 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG--HEVVGVYSRSPASAERAAAFI------GA-------GAILDLEEILRDADLVFI 74 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT--SEEEEESSCHH-HHHHHHC--------TT------------TTGGGCC-SEEEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCccccccccccc------cc-------ccccccccccccCCEEEE
Confidence 589999999999999999999999 88875 578887766665421 11 122356678899999999
Q ss_pred cCccccHHHHHHhhhhc--CCCCCeEEEeccCCC
Q 012720 206 AMPVQFSSSFLEGISDY--VDPGLPFISLSKGLE 237 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~--l~~~~ivV~~snGi~ 237 (458)
+||++.+.+++++|... ..++++|+.++-.++
T Consensus 75 avpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 75 AVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp -S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred EechHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 99999999999999877 788999999993333
No 86
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.20 E-value=3.7e-10 Score=126.24 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=109.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+||+|||+|.||.++|..|.++|..++|++|+|+++.++.+.+.|... ...++.+++++++|+||+|
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID------------RGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC------------cccCCHHHHhcCCCEEEEC
Confidence 3689999999999999999999883358999999998877766654310 1234667778899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC---EEEEECccc-----HH-HHhccCCe
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP---FIALSGPSF-----AL-ELMNKLPT 277 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~---~~vl~gP~~-----a~-ei~~g~~t 277 (458)
||.+.+.++++++.++++++++|++++ ++.... .+.+.+.++..... ...+.|+.. +. +...+...
T Consensus 71 vp~~~~~~vl~~l~~~~~~~~ii~d~~-svk~~~----~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~ 145 (735)
T PRK14806 71 VPVLAMEKVLADLKPLLSEHAIVTDVG-STKGNV----VDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKV 145 (735)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEcC-CCchHH----HHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeE
Confidence 999999999999999888888777776 444322 23333333321000 011122221 11 22234333
Q ss_pred EEEE-ccCCHHHHHHHHHHHhcCCCeEEEcC
Q 012720 278 AMVV-ASKDRKLANAVQQLLASKHLRISTSS 307 (458)
Q Consensus 278 ~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~ 307 (458)
.+.. ...+++..+.+.++|+..|.++...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 146 ILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 3333 23567788999999999998776654
No 87
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.19 E-value=3e-10 Score=105.32 Aligned_cols=165 Identities=20% Similarity=0.289 Sum_probs=102.1
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-------CccCCC---CCCCCceEEeCCHHhhcC
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-------CRYFPE---QKLPENVIATTDAKTALL 198 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~-------~~~~~~---~~l~~~i~a~~~~~ea~~ 198 (458)
||+|||+|.||..+|..++.+| ++|++||++++.++...+.-.. ...+.. .....++..++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 7999999999999999999999 9999999999876544331000 000000 01124678889999876
Q ss_pred CCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHhccC
Q 012720 199 GADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELMNKL 275 (458)
Q Consensus 199 ~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei~~g~ 275 (458)
++|+||-|+|. ....+++.++...+++++++.+.+.++... .+.+.++.+..- ..-...|.+...
T Consensus 78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~-------~la~~~~~p~R~ig~Hf~~P~~~~~----- 145 (180)
T PF02737_consen 78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS-------ELAAALSRPERFIGMHFFNPPHLMP----- 145 (180)
T ss_dssp TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH-------HHHTTSSTGGGEEEEEE-SSTTT-------
T ss_pred hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH-------HHHhccCcCceEEEEecccccccCc-----
Confidence 99999999996 457888899999999999998888777654 233333322111 112334543321
Q ss_pred CeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720 276 PTAMVVAS-KDRKLANAVQQLLASKHLRISTSSD 308 (458)
Q Consensus 276 ~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~d 308 (458)
...++.+. -+++.++++..++...|.......|
T Consensus 146 lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 146 LVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 11222332 4678999999999999988766544
No 88
>PLN02712 arogenate dehydrogenase
Probab=99.15 E-value=2.9e-09 Score=117.06 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=108.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil 205 (458)
+|||+|||+|.||..+|..|.++| ++|++|+|+... +...+.| +...++.++++ .++|+||+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~-~~A~~~G--------------v~~~~d~~e~~~~~aDvViL 114 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG--HTVLAHSRSDHS-LAARSLG--------------VSFFLDPHDLCERHPDVILL 114 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHH-HHHHHcC--------------CEEeCCHHHHhhcCCCEEEE
Confidence 579999999999999999999998 999999998543 3333322 23455777744 56999999
Q ss_pred cCccccHHHHHHhhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 206 AMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 206 aVp~~~v~~vl~~i~-~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
|||...+.++++++. +.++++++|+++. ++- ..+.+.+.+.++.. +.....+.||........+.. .++.
T Consensus 115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~-SvK----~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~--~~~~ 187 (667)
T PLN02712 115 CTSIISTENVLKSLPLQRLKRNTLFVDVL-SVK----EFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR--FVYE 187 (667)
T ss_pred cCCHHHHHHHHHhhhhhcCCCCeEEEECC-CCc----HHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc--EEEe
Confidence 999999999999885 6788899999986 222 23334455544321 111223446653322223333 1222
Q ss_pred ----cCC---HHHHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720 283 ----SKD---RKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (458)
Q Consensus 283 ----g~d---~e~~e~l~~lL~~~g~~v~~~~di~~~~~~ 315 (458)
+.+ .+.++.+.+++...|.++...+.-..+...
T Consensus 188 ~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~ 227 (667)
T PLN02712 188 KVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYA 227 (667)
T ss_pred eccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence 222 245677789999999998876554444443
No 89
>PLN02712 arogenate dehydrogenase
Probab=99.11 E-value=1.7e-09 Score=118.82 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=103.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVil 205 (458)
.|||+|||+|.||..+|..|.+.| ++|++|+|+.+. +...+.| +....+.++++. .+|+||+
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G--~~V~~~dr~~~~-~~a~~~G--------------v~~~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQG--HTVLAYSRSDYS-DEAQKLG--------------VSYFSDADDLCEEHPEVILL 431 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCc--CEEEEEECChHH-HHHHHcC--------------CeEeCCHHHHHhcCCCEEEE
Confidence 589999999999999999999988 999999998643 3333333 234457777665 5899999
Q ss_pred cCccccHHHHHHhhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCe---EE
Q 012720 206 AMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPT---AM 279 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~-~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t---~v 279 (458)
|||...+.++++++.. .++++++|++++.+-. ...+.+.+.++.. +.....+.|+............ ..
T Consensus 432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-----~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~ 506 (667)
T PLN02712 432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-----FPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKV 506 (667)
T ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-----HHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCc
Confidence 9999999999998865 6888999999964321 1223444443321 1111123333322100001110 01
Q ss_pred EEccC--CHHHHHHHHHHHhcCCCeEEEcCChHHHH
Q 012720 280 VVASK--DRKLANAVQQLLASKHLRISTSSDVTGVE 313 (458)
Q Consensus 280 ~i~g~--d~e~~e~l~~lL~~~g~~v~~~~di~~~~ 313 (458)
.+++. ..+.++.+.+++...|.+++..+--..+.
T Consensus 507 ~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~ 542 (667)
T PLN02712 507 RIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDW 542 (667)
T ss_pred EeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHH
Confidence 12221 23456677799999998887765444333
No 90
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=99.06 E-value=1.6e-09 Score=112.09 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=130.5
Q ss_pred CeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC-CCC---CCCCceEEeC--CHHh---hc
Q 012720 128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-PEQ---KLPENVIATT--DAKT---AL 197 (458)
Q Consensus 128 ~kI~IIGaG~mG~-~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~-~~~---~l~~~i~a~~--~~~e---a~ 197 (458)
|||.++|+|+||. .++..|.++| ++|++++++++.+++++++|+..... +.. ..-..+.... +.++ .+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~ 78 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAI 78 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHh
Confidence 6899999999998 5588999988 99999999999999999987531111 111 1111233331 2122 34
Q ss_pred CCCCEEEEcCccccHHHHHHhhhhcCCC--------CCeEEEeccCCCcchhhhHHHHHHHHh------------CCCCC
Q 012720 198 LGADYCLHAMPVQFSSSFLEGISDYVDP--------GLPFISLSKGLELNTLRMMSQIIPQAL------------RNPRQ 257 (458)
Q Consensus 198 ~~aDiVilaVp~~~v~~vl~~i~~~l~~--------~~ivV~~snGi~~~t~~~l~e~l~~~l------------g~~~~ 257 (458)
.++|+|+++|+....+.++..|.+.+.+ +-.|++|.||+.++ ..+.+.+.+.. +-+ .
T Consensus 79 ~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng--~~L~~~V~~~~~~~~~~wi~~~~~f~-~ 155 (381)
T PRK02318 79 AEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGT--SFLKKHVLKALSEDEKAWLEEHVGFV-D 155 (381)
T ss_pred cCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHH--HHHHHHHHHhCCHHHHHHHHhcCCCC-C
Confidence 5889999999988877777766555433 23789999999875 23333332211 100 0
Q ss_pred CEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCC-----CeEEEcCChHHHHHHHHHHHH-HHH---HHHH
Q 012720 258 PFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKH-----LRISTSSDVTGVEIAGALKNV-LAI---AAGI 328 (458)
Q Consensus 258 ~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g-----~~v~~~~di~~~~~~kalkNi-~ai---~~G~ 328 (458)
..+-+.+|.... .+.. .+.. +...+.+.+-++..+ ..+.+++|+...+|.|+..|. .+. ..|.
T Consensus 156 t~VDrI~P~~~~---~d~~--~v~~---E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~ 227 (381)
T PRK02318 156 SAVDRIVPAQKN---EDPL--DVTV---EPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGY 227 (381)
T ss_pred cHHhcCCCCCCc---cCCc--cccc---ccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHH
Confidence 111223341110 0000 0000 000111111111111 257889999999999998653 222 2344
Q ss_pred Hhccc-----CCCcHHHHHHHHHHHHHHHHHH-HcCCCcccc
Q 012720 329 VVGMN-----LGNNSMAALVAQGCSEIRWLAT-KMGAKPATI 364 (458)
Q Consensus 329 ~~~~k-----l~~n~~~al~~~~l~E~~~la~-a~Gi~~~~~ 364 (458)
..+.+ +.+.....++...+.|+..++. +.|++++.+
T Consensus 228 l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~g~~~~~l 269 (381)
T PRK02318 228 LKGYKTIREAILDPSIRAVVKGALEESGAVLIKKYGFDKEEH 269 (381)
T ss_pred HcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcCCcCHHHH
Confidence 33333 3345567888999999999996 468865443
No 91
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.03 E-value=6.2e-09 Score=106.59 Aligned_cols=158 Identities=13% Similarity=0.190 Sum_probs=104.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+||+|||+ |.||..+|..|.+.. +++|+.+|+..+ ...++++++++||+||+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil 57 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF 57 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence 579999999 999999999999752 389999998521 11256677899999999
Q ss_pred cCccccHHHHHHhhhhc---CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720 206 AMPVQFSSSFLEGISDY---VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~---l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~ 282 (458)
|||...+.++++++.++ ++++++|.++.. += ..+.+.+.+. +..+.....+.||... ....+....+ ..
T Consensus 58 avPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-vK----~~i~~~~~~~-~~~fVG~HPMaG~E~s-~lf~g~~~il-tp 129 (370)
T PRK08818 58 SAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-IK----QAPVAAMLAS-QAEVVGLHPMTAPPKS-PTLKGRVMVV-CE 129 (370)
T ss_pred eCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-Cc----HHHHHHHHhc-CCCEEeeCCCCCCCCC-cccCCCeEEE-eC
Confidence 99999999999999876 789999998872 21 1122222221 1111112234455322 1234544322 22
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHH
Q 012720 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGAL 318 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kal 318 (458)
....+..+.++++++..|.++...+--..++..+.+
T Consensus 130 ~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 130 ARLQHWSPWVQSLCSALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred CCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 344555788999999999998877655555554443
No 92
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.03 E-value=2.4e-09 Score=108.47 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=88.5
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.+.|+ |.+. ..+.++. .|+|+|||+|.||..+|.+|...| ++|.+|+|+++.....
T Consensus 119 R~~~~~~~~~~~~~~~----w~~~---~~~~~l~--g~~VgIIG~G~IG~~vA~~L~~~G--~~V~~~d~~~~~~~~~-- 185 (330)
T PRK12480 119 RRFPDIERRVQAHDFT----WQAE---IMSKPVK--NMTVAIIGTGRIGAATAKIYAGFG--ATITAYDAYPNKDLDF-- 185 (330)
T ss_pred HhHHHHHHHHHhCCcc----cccc---cCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCChhHhhhh--
Confidence 4445566666666552 3221 1233443 579999999999999999999888 9999999987542211
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
+....+++++++++|+|++++|... +..++ .++.+.+++++++|++++|-..++
T Consensus 186 ----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~ 241 (330)
T PRK12480 186 ----------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINT 241 (330)
T ss_pred ----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCH
Confidence 1123478889999999999999653 55555 567888999999999999987764
No 93
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.98 E-value=4.6e-08 Score=95.11 Aligned_cols=173 Identities=15% Similarity=0.157 Sum_probs=117.7
Q ss_pred CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEE
Q 012720 152 QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS 231 (458)
Q Consensus 152 ~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~ 231 (458)
+++|++++|+.++++.+.+.. ++..+.+..+++.++|+||+|||++.+.+++.++.+.+.++++||+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS 75 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLIS 75 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEE
Confidence 378999999998887776531 1345567778788999999999999999999999887777889999
Q ss_pred eccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720 232 LSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVT 310 (458)
Q Consensus 232 ~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~ 310 (458)
+.+|+..+ .+.+.++.. ...+...|+.+..++.|. +.+..+. .+++..+.++.+|+..|..+...++..
T Consensus 76 ~~agi~~~-------~l~~~~~~~--~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~ 145 (245)
T TIGR00112 76 IAAGVTLE-------KLSQLLGGT--RRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVELPEALM 145 (245)
T ss_pred ecCCCCHH-------HHHHHcCCC--CeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHc
Confidence 99999864 355556531 135778899888776653 2233332 345677899999999997776654322
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720 311 GVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (458)
Q Consensus 311 ~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~ 366 (458)
+.+...+| ..+. ++...+..+..-+.+.|++++....
T Consensus 146 ---------~~~talsg-------sgPA---~~~~~~~al~~~~v~~Gl~~~~A~~ 182 (245)
T TIGR00112 146 ---------DAVTALSG-------SGPA---YVFLFIEALADAGVKQGLPRELALE 182 (245)
T ss_pred ---------chHHhhcc-------CcHH---HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 21111111 1122 3333444455567778988776544
No 94
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.98 E-value=1.5e-08 Score=98.76 Aligned_cols=189 Identities=17% Similarity=0.187 Sum_probs=124.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------CCCceEEeCCHHhhcCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l~~~i~a~~~~~ea~~~a 200 (458)
|+||+.||+|.+|.+....++..-.+..|+++|.+..+..+++... -+.|.||.. .-.++.+.+|.+.++.++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~-lpiyepgldevv~~crgknlffstdiekai~ea 79 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDK-LPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCC-CcccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence 4799999999999998888775543468999999998888887754 356777753 245677889999999999
Q ss_pred CEEEEcCccc---------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC--CCCCCEEEEE
Q 012720 201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR--NPRQPFIALS 263 (458)
Q Consensus 201 DiVilaVp~~---------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg--~~~~~~~vl~ 263 (458)
|+||++|-.. .+++....|...-....+|+.-+ ++...+ +|.+...+. .+...+-+++
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivveks-tvpv~a----aesi~~il~~n~~~i~fqils 154 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKS-TVPVKA----AESIEKILNHNSKGIKFQILS 154 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeec-cccchH----HHHHHHHHhcCCCCceeEecc
Confidence 9999988531 36666677777666666776555 455433 344444432 1234567899
Q ss_pred CcccHHHHh----ccCCeEEEEccCC-H---HHHHHHHHHHhcCC-CeEEEcCChHHHHHHHHHHHH
Q 012720 264 GPSFALELM----NKLPTAMVVASKD-R---KLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNV 321 (458)
Q Consensus 264 gP~~a~ei~----~g~~t~v~i~g~d-~---e~~e~l~~lL~~~g-~~v~~~~di~~~~~~kalkNi 321 (458)
.|.+..|.. .-.+..+.++|.+ + ...+.+..+++..- ..-..+.+....|+.|+..|.
T Consensus 155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 998866431 1245667777754 2 34555666665432 123345555566666655554
No 95
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.98 E-value=1.2e-08 Score=113.42 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=112.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea 196 (458)
.+||+|||+|.||..||..++.+| ++|+++|++++.++...+. ......+... .....++.+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG- 389 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 468999999999999999999999 9999999999876532211 0000001110 11246788888854
Q ss_pred cCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCE-EEEECcccHHHHhc
Q 012720 197 LLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFALELMN 273 (458)
Q Consensus 197 ~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~-~vl~gP~~a~ei~~ 273 (458)
+++||+||-|++. ....+++.++.+++++++++.+.+.++... .+.+.+..+..-+ .....|.+...
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p~r~~g~Hff~P~~~~~--- 459 (715)
T PRK11730 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS-------LLAKALKRPENFCGMHFFNPVHRMP--- 459 (715)
T ss_pred hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCCccEEEEecCCcccccc---
Confidence 7999999999996 347788899999999999998877777653 2333333221101 12234432221
Q ss_pred cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (458)
Q Consensus 274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~ 311 (458)
...++.+. -+++.++.+..++...|...+...|..|
T Consensus 460 --lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (715)
T PRK11730 460 --LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG 496 (715)
T ss_pred --eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc
Confidence 11122222 3678999999999999988777677655
No 96
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.95 E-value=1.6e-08 Score=112.24 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=111.8
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhhc---C----CCccCCCC---CCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYFPEQ---KLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~v~~r~~~~~e~l~~~g---~----~~~~~~~~---~l~~~i~a~~~~~e 195 (458)
.+||+|||+|.||..+|..++ .+| ++|+++|.+++.++...+.- + ....+... .....+..+++.+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 380 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAG--IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR- 380 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence 468999999999999999998 589 99999999997655432210 0 00000000 1124577888885
Q ss_pred hcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHH
Q 012720 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALEL 271 (458)
Q Consensus 196 a~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei 271 (458)
++++||+||-|++.. ...+++.++.+++++++++.+.+.++.... +.+.+..+. .+. -...|.+..
T Consensus 381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~-------la~~~~~p~-r~~g~HffnP~~~~-- 450 (699)
T TIGR02440 381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ-------IAAAASRPE-NVIGLHYFSPVEKM-- 450 (699)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH-------HHHhcCCcc-cEEEEecCCccccC--
Confidence 579999999999963 467788999999999999988887777641 223333211 111 223343221
Q ss_pred hccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720 272 MNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (458)
Q Consensus 272 ~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~ 311 (458)
....++.+. -+++.++.+..++...|...+...|..|
T Consensus 451 ---~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG 488 (699)
T TIGR02440 451 ---PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG 488 (699)
T ss_pred ---ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 111122222 3578999999999999988877777654
No 97
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.95 E-value=1.1e-08 Score=101.83 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=107.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC----CCccCCCC---CCCCceEEeCCHHhh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC----NCRYFPEQ---KLPENVIATTDAKTA 196 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~---g~----~~~~~~~~---~l~~~i~a~~~~~ea 196 (458)
.+||+|||+|.||..+|..++.+| ++|+++|++++.+++.... .+ ....+... ..-..++.++++. +
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G--~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAG--YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcC--CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-H
Confidence 579999999999999999999988 9999999998765433221 00 00001110 1123455566665 5
Q ss_pred cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC-CEEEEECcccHHHHhc
Q 012720 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PFIALSGPSFALELMN 273 (458)
Q Consensus 197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~-~~~vl~gP~~a~ei~~ 273 (458)
+++||+||-+++.. --.+++.++..+.++++++-+.+.++.+.. +.+.+..+-. -..-...|.....
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~-------ia~~~~rper~iG~HFfNP~~~m~--- 149 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE-------LAEALKRPERFIGLHFFNPVPLMP--- 149 (307)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH-------HHHHhCCchhEEEEeccCCCCcce---
Confidence 89999999999963 467788899999999999988887887642 2233222111 0112234443221
Q ss_pred cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVT 310 (458)
Q Consensus 274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~ 310 (458)
...++.+. -+++.++++.++..+.|.......|..
T Consensus 150 --LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p 185 (307)
T COG1250 150 --LVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVP 185 (307)
T ss_pred --eEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC
Confidence 11122222 257889999999999885544445543
No 98
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.94 E-value=2.2e-08 Score=111.14 Aligned_cols=170 Identities=13% Similarity=0.147 Sum_probs=112.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea 196 (458)
.+||+|||+|.||..||..++.+| ++|+++|++++.+++..+. ......+... .....++.+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG- 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 468999999999999999999999 9999999999876543221 0000001100 11235777888854
Q ss_pred cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHhc
Q 012720 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELMN 273 (458)
Q Consensus 197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei~~ 273 (458)
+++||+||-||+.. ...+++.++.+.+++++++.+.+.++... .+.+.+..+..- ..-...|.+...
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~-------~ia~~~~~p~r~ig~Hff~P~~~~~--- 459 (714)
T TIGR02437 390 FDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS-------LLAKALKRPENFCGMHFFNPVHRMP--- 459 (714)
T ss_pred hcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEecCCCcccCc---
Confidence 79999999999963 47788899999999999998887777653 233333322110 112234433221
Q ss_pred cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (458)
Q Consensus 274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~ 311 (458)
...++.+. -+++.++.+.+++...|.......|..|
T Consensus 460 --lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (714)
T TIGR02437 460 --LVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG 496 (714)
T ss_pred --eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc
Confidence 11122222 3578899999999999988777677654
No 99
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.93 E-value=1.6e-08 Score=112.36 Aligned_cols=170 Identities=20% Similarity=0.193 Sum_probs=111.8
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhh---c----CCCccCCC---CCCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEK---H----CNCRYFPE---QKLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~v~~r~~~~~e~l~~~---g----~~~~~~~~---~~l~~~i~a~~~~~e 195 (458)
.+||+|||+|.||..||..++ .+| ++|+++|++++.++...+. . .....+.. ......++.+++.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR- 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence 468999999999999999999 888 9999999998765543221 0 00000110 01124678888885
Q ss_pred hcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHh
Q 012720 196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELM 272 (458)
Q Consensus 196 a~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei~ 272 (458)
++++||+||-|++. ....+++.++.+++++++++.+.+.++.... +.+.+..+..- ..-...|.+...
T Consensus 386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~-------la~~~~~p~r~ig~Hff~P~~~~~-- 456 (708)
T PRK11154 386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ-------IAAAAARPEQVIGLHYFSPVEKMP-- 456 (708)
T ss_pred HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHHhcCcccceEEEecCCccccCc--
Confidence 57999999999996 3477888999999999999988887777642 22332321110 112234433221
Q ss_pred ccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720 273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (458)
Q Consensus 273 ~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~ 311 (458)
...++.+. -+++.++.+..++...|.......|..|
T Consensus 457 ---lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG 493 (708)
T PRK11154 457 ---LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG 493 (708)
T ss_pred ---eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence 11222222 3678999999999998887666666543
No 100
>PLN03139 formate dehydrogenase; Provisional
Probab=98.93 E-value=5.1e-09 Score=107.82 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=91.6
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-.+.++.++.|.|... .+ ...+.++. .++|+|||+|+||..+|++|..-| ++|.+|+|.....+...+
T Consensus 171 R~~~~~~~~~~~g~W~~~-----~~-~~~~~~L~--gktVGIVG~G~IG~~vA~~L~afG--~~V~~~d~~~~~~~~~~~ 240 (386)
T PLN03139 171 RNFLPGYHQVVSGEWNVA-----GI-AYRAYDLE--GKTVGTVGAGRIGRLLLQRLKPFN--CNLLYHDRLKMDPELEKE 240 (386)
T ss_pred cCcHHHHHHHHhCCCccc-----cc-cCCCcCCC--CCEEEEEeecHHHHHHHHHHHHCC--CEEEEECCCCcchhhHhh
Confidence 445667777788877531 11 11233444 679999999999999999999777 999999987532222222
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+ +...++++++++++|+|++++|. ..++.++ .++...+++++++|+++.|-..++
T Consensus 241 ~g--------------~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe 298 (386)
T PLN03139 241 TG--------------AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDT 298 (386)
T ss_pred cC--------------ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhH
Confidence 22 23345889999999999999995 5678777 457888999999999998866553
No 101
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=98.92 E-value=7.1e-09 Score=90.08 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHcCCCccc--cccccCCcchhhhhccCC
Q 012720 308 DVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKMGAKPAT--ITGLSGTGDIMLTCFVNL 381 (458)
Q Consensus 308 di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~la~a~Gi~~~~--~~~~~g~gd~~~t~~~~~ 381 (458)
||....|.|++.|....+.+....+.++ +.....++...+.|+.+++++.|++.+. +.+. +...+....
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~-----~~~~~~~~~ 75 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEA-----IERLIRSTP 75 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHH-----HHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH-----HHHHHHhcC
Confidence 6788899999999766665555554432 3446699999999999999999986332 2110 111111111
Q ss_pred CccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720 382 SRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (458)
Q Consensus 382 srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~ 440 (458)
....++.+|+.+|+++| + ...+|+++++|+++|+++|.++.+|++++.
T Consensus 76 ~~~~SM~~D~~~gr~tE-i----------d~i~G~vv~~a~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 76 DNRSSMLQDIEAGRPTE-I----------DYINGYVVRLAKKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp TT--HHHHHHHTTB--S-H----------HHTHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred CccccHHHHHHHccccc-H----------HHHHHHHHHHHHHHCCCCcHHHHHHHHHHH
Confidence 12235678888888765 2 366799999999999999999999999875
No 102
>PRK07574 formate dehydrogenase; Provisional
Probab=98.92 E-value=9.6e-09 Score=105.80 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=91.2
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.|.|... .....+.++. .|+|+|||+|+||..+|++|..-| ++|.+|+|.....+....
T Consensus 164 R~~~~~~~~~~~g~W~~~------~~~~~~~~L~--gktVGIvG~G~IG~~vA~~l~~fG--~~V~~~dr~~~~~~~~~~ 233 (385)
T PRK07574 164 RNYEPSHRQAVEGGWNIA------DCVSRSYDLE--GMTVGIVGAGRIGLAVLRRLKPFD--VKLHYTDRHRLPEEVEQE 233 (385)
T ss_pred cCHHHHHHHHHhCCCCcc------cccccceecC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCchhhHhh
Confidence 555667777777777641 1111123343 579999999999999999999777 999999997632222222
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+ +....+++++++.||+|++++|. ..++.++. +....+++|+++|+++.|-..++
T Consensus 234 ~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe 291 (385)
T PRK07574 234 LG--------------LTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDR 291 (385)
T ss_pred cC--------------ceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhH
Confidence 11 23335789999999999999995 56888884 57788999999999998876653
No 103
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.91 E-value=6.1e-09 Score=105.73 Aligned_cols=127 Identities=14% Similarity=0.220 Sum_probs=91.8
Q ss_pred ccCCcccchhhHHhhhhcccccchhhc--cccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRS--KAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l 168 (458)
++-...++.++.|.|.+. ...|.. ..+.++. .++|+|||+|+||..+|.+|...| ++|.+|+|+..... .
T Consensus 117 R~~~~~~~~~~~g~W~~~---~~~~~~~~~~g~~L~--gktvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~-~ 188 (333)
T PRK13243 117 RRLVEADHFVRSGEWKRR---GVAWHPLMFLGYDVY--GKTIGIIGFGRIGQAVARRAKGFG--MRILYYSRTRKPEA-E 188 (333)
T ss_pred hCHHHHHHHHHcCCCCcc---ccccccccccccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCChhh-H
Confidence 455667788888888641 111221 1234454 679999999999999999999887 99999999764321 1
Q ss_pred HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 169 ~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
...+ +. ..+++++++++|+|++++|. ..+..++ .+....+++++++|+++.|-..++
T Consensus 189 ~~~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 189 KELG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred HHcC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH
Confidence 1111 12 23788889999999999995 4577777 467788999999999998866653
No 104
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=4.2e-08 Score=97.09 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=134.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCCEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL 204 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiVi 204 (458)
+.|+.||++.||..++.+.+++| +.|.+|+|+..+++.+.++..+-. .+.-..++++. ++....|+
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~G--f~v~~yNRT~skvD~flaneak~~---------~i~ga~S~ed~v~klk~PR~ii 75 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKG--FTVCAYNRTTSKVDEFLANEAKGT---------KIIGAYSLEDFVSKLKKPRVII 75 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccC--ceEEEeccchHhHHHHHHHhhcCC---------cccCCCCHHHHHHhcCCCcEEE
Confidence 68999999999999999999999 999999999999998876532210 12223466665 46789999
Q ss_pred EcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE-ECcccHHHHhccCCeEEEEc
Q 012720 205 HAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELMNKLPTAMVVA 282 (458)
Q Consensus 205 laVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl-~gP~~a~ei~~g~~t~v~i~ 282 (458)
+.||+ ..+..++++|.+++.+|.+||+-.|.-.++|.++..+ +.+ .|. -++ .|-+-.+|.+.-.|+ .+.
T Consensus 76 llvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e-l~k-~Gi-----lfvG~GVSGGEEGAR~GPS--lMp 146 (487)
T KOG2653|consen 76 LLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE-LAK-KGI-----LFVGSGVSGGEEGARYGPS--LMP 146 (487)
T ss_pred EEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH-HHh-cCc-----EEEecCccCcccccccCCc--cCC
Confidence 99997 5699999999999999999999888777776544333 222 132 222 222223344333444 356
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH-cCCCc
Q 012720 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK-MGAKP 361 (458)
Q Consensus 283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a-~Gi~~ 361 (458)
|++.+....++++|.....++..++. -..|-+ + .|...=+|+.+|-+---=.+.+.|+..+.+. .|+.-
T Consensus 147 Gg~~~Awp~ik~ifq~iaakv~~~ep--Cc~wvG---~-----~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~ 216 (487)
T KOG2653|consen 147 GGSKEAWPHIKDIFQKIAAKVSDGEP--CCDWVG---E-----GGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN 216 (487)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCC--Ceeeec---C-----CCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH
Confidence 66888999999999753222111100 011100 0 0222222333332222226789999999999 67775
Q ss_pred ccccc
Q 012720 362 ATITG 366 (458)
Q Consensus 362 ~~~~~ 366 (458)
+.+.+
T Consensus 217 ~eia~ 221 (487)
T KOG2653|consen 217 DEIAE 221 (487)
T ss_pred HHHHH
Confidence 55543
No 105
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.90 E-value=5.9e-09 Score=105.13 Aligned_cols=124 Identities=16% Similarity=0.210 Sum_probs=93.3
Q ss_pred cccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.++-...++.+++|.|++ ....+.++. .+++||||+|++|+.+|.+|..-| ++|.+||+....- ...
T Consensus 115 ~R~~~~~~~~~~~g~W~~--------~~~~g~el~--gkTvGIiG~G~IG~~va~~l~afg--m~v~~~d~~~~~~-~~~ 181 (324)
T COG0111 115 ARRIPDADASQRRGEWDR--------KAFRGTELA--GKTVGIIGLGRIGRAVAKRLKAFG--MKVIGYDPYSPRE-RAG 181 (324)
T ss_pred hcCchhhHHHHHcCCccc--------ccccccccc--CCEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCCchh-hhc
Confidence 366677788888887776 122344555 679999999999999999999777 9999999943221 111
Q ss_pred hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720 170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.. .....+++++.++.||+|.+.+|. ..++.++. +....|++|.++|+++.|-..++
T Consensus 182 ~~--------------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde 240 (324)
T COG0111 182 VD--------------GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDE 240 (324)
T ss_pred cc--------------cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecH
Confidence 11 123345899999999999999995 56888884 45778999999999999977653
No 106
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.89 E-value=5.5e-09 Score=105.31 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=105.4
Q ss_pred ceecCCCCCCCCCCccccccc----ccccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHH
Q 012720 68 TIITPYPDDPDPEPVSAVSSE----IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA 143 (458)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA 143 (458)
...|-.|+ -.++.++|-.-- ..++-.+.+|..|.|.|.. |. ......+.++. .+++||||+|.+|.++|
T Consensus 90 I~Vtnvp~-~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~---~~-~~~~~~~~~l~--gktvGIiG~GrIG~avA 162 (324)
T COG1052 90 ITVTNVPG-YSTEAVAEHAVALILALARRIHEGDRRVREGNWSL---SG-GPDPLLGFDLR--GKTLGIIGLGRIGQAVA 162 (324)
T ss_pred cEEEeCCC-CCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccc---cC-CcccccccCCC--CCEEEEECCCHHHHHHH
Confidence 55666665 444443332111 4588889999999998887 21 11122355565 67999999999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhh
Q 012720 144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISD 221 (458)
Q Consensus 144 ~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~ 221 (458)
+++. |++.+|..|+|.+. ....+.+ . .... +++++++++|+|++.+|. .....++. +...
T Consensus 163 ~r~~--~Fgm~v~y~~~~~~--~~~~~~~-~------------~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~ 224 (324)
T COG1052 163 RRLK--GFGMKVLYYDRSPN--PEAEKEL-G------------ARYV-DLDELLAESDIISLHCPLTPETRHLINAEELA 224 (324)
T ss_pred HHHh--cCCCEEEEECCCCC--hHHHhhc-C------------ceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence 9998 55699999999874 1222211 1 2233 488999999999999995 56888884 5678
Q ss_pred cCCCCCeEEEeccCCCcch
Q 012720 222 YVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 222 ~l~~~~ivV~~snGi~~~t 240 (458)
.++++.++|+++.|-..++
T Consensus 225 ~mk~ga~lVNtaRG~~VDe 243 (324)
T COG1052 225 KMKPGAILVNTARGGLVDE 243 (324)
T ss_pred hCCCCeEEEECCCccccCH
Confidence 8999999999999977664
No 107
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.89 E-value=2.2e-08 Score=111.52 Aligned_cols=169 Identities=16% Similarity=0.197 Sum_probs=113.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCCC---CCCCceEEeCCHHhh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPEQ---KLPENVIATTDAKTA 196 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-------~~~~~~~~~---~l~~~i~a~~~~~ea 196 (458)
.+||+|||+|.||..||..++.+| ++|+++|++++.+++..+.- .....+... .....++.++|.+ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 411 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKG--LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-G 411 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCC--CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-H
Confidence 468999999999999999999999 99999999998766432210 000001100 1124577888886 4
Q ss_pred cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHHh
Q 012720 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELM 272 (458)
Q Consensus 197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei~ 272 (458)
+++||+||-+|+.. ...+++.++.+++++++++.+.+.++... .+.+.+..+. .+. -...|.+...
T Consensus 412 ~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p~-r~ig~Hff~P~~~m~-- 481 (737)
T TIGR02441 412 FKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK-------DIAAVSSRPE-KVIGMHYFSPVDKMQ-- 481 (737)
T ss_pred hccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcc-ceEEEeccCCcccCc--
Confidence 79999999999963 47778899999999999998887777764 2333333221 111 2233432221
Q ss_pred ccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720 273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (458)
Q Consensus 273 ~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~ 311 (458)
...++.+. -+++.++.+..++...|.......|..|
T Consensus 482 ---LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 518 (737)
T TIGR02441 482 ---LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG 518 (737)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence 11122222 3578899999999999988777677554
No 108
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.84 E-value=9.4e-09 Score=104.33 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=86.2
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.+.|. |.... .+.++. .|+|+|||+|.||..+|.+|++ +++++|++|+++.... ...
T Consensus 119 R~~~~~~~~~~~~~~~----~~~~~---~~~~l~--g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~--~~~ 186 (332)
T PRK08605 119 RHFNQIQTKVREHDFR----WEPPI---LSRSIK--DLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAK--AAT 186 (332)
T ss_pred cChHHHHHHHHhCCcc----ccccc---ccceeC--CCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHh--HHh
Confidence 4445566667777662 32211 233444 5799999999999999999954 3338999999876432 111
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
. +...++++++++++|+|++++|... ...++ .+..+.+++++++|++++|...++
T Consensus 187 -~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~ 243 (332)
T PRK08605 187 -Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT 243 (332)
T ss_pred -h--------------ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence 1 2234578899999999999999754 44444 346778999999999999987765
No 109
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.84 E-value=1.3e-08 Score=91.56 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||.|+.|.+.|.+|.+.| .+|++-.|... ..+..++.|.. + .+.+|+++.+|+|++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG--~~V~Vglr~~s~s~~~A~~~Gf~--------------v-~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG--VNVIVGLREGSASWEKAKADGFE--------------V-MSVAEAVKKADVVML 66 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT-E--------------C-CEHHHHHHC-SEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHhCC--CCEEEEecCCCcCHHHHHHCCCe--------------e-ccHHHHHhhCCEEEE
Confidence 579999999999999999999999 99999888765 55666666642 2 377889999999999
Q ss_pred cCccccHHHHH-HhhhhcCCCCCeEEEeccCCC
Q 012720 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 206 aVp~~~v~~vl-~~i~~~l~~~~ivV~~snGi~ 237 (458)
.+|+....+++ ++|.+.+++|+.++... |+.
T Consensus 67 L~PD~~q~~vy~~~I~p~l~~G~~L~fah-Gfn 98 (165)
T PF07991_consen 67 LLPDEVQPEVYEEEIAPNLKPGATLVFAH-GFN 98 (165)
T ss_dssp -S-HHHHHHHHHHHHHHHS-TT-EEEESS-SHH
T ss_pred eCChHHHHHHHHHHHHhhCCCCCEEEeCC-cch
Confidence 99999999999 77999999999887544 654
No 110
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.83 E-value=1.8e-08 Score=93.23 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=74.9
Q ss_pred cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720 120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (458)
Q Consensus 120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (458)
+.++. .++|+|||+|.+|..+|.+|..-| .+|++|+|.....+.....+ + ...+++++++.
T Consensus 31 ~~~l~--g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~~--------------~-~~~~l~ell~~ 91 (178)
T PF02826_consen 31 GRELR--GKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEFG--------------V-EYVSLDELLAQ 91 (178)
T ss_dssp BS-ST--TSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTT--------------E-EESSHHHHHHH
T ss_pred ccccC--CCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccccc--------------c-eeeehhhhcch
Confidence 34444 579999999999999999999777 99999999987554333322 2 23488999999
Q ss_pred CCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcc
Q 012720 200 ADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN 239 (458)
Q Consensus 200 aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~ 239 (458)
+|+|++++|. ..+..++ .+....++++.++|+++.|-..+
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVD 133 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhh
Confidence 9999999995 4565555 34677789999999999886655
No 111
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.82 E-value=2.2e-08 Score=99.79 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|+||.++|.+|...| ++|++|+|.....+.....| +.. .+++++++.+|+|+++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G--~~ViV~~r~~~s~~~A~~~G--------------~~v-~sl~Eaak~ADVV~ll 78 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSG--VEVVVGVRPGKSFEVAKADG--------------FEV-MSVSEAVRTAQVVQML 78 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCc--CEEEEEECcchhhHHHHHcC--------------CEE-CCHHHHHhcCCEEEEe
Confidence 478999999999999999999999 99999987654333333333 222 3788999999999999
Q ss_pred CccccHHHHHH-hhhhcCCCCCeEEEeccCCCc
Q 012720 207 MPVQFSSSFLE-GISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 207 Vp~~~v~~vl~-~i~~~l~~~~ivV~~snGi~~ 238 (458)
+|.....+++. ++.+.++++++++. +-|+..
T Consensus 79 LPd~~t~~V~~~eil~~MK~GaiL~f-~hgfni 110 (335)
T PRK13403 79 LPDEQQAHVYKAEVEENLREGQMLLF-SHGFNI 110 (335)
T ss_pred CCChHHHHHHHHHHHhcCCCCCEEEE-CCCcce
Confidence 99876778874 68999999987764 447765
No 112
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.77 E-value=5.7e-08 Score=97.84 Aligned_cols=186 Identities=14% Similarity=0.119 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHH-------HHHH-----------HhhcCCCccCCCC---CCCCceEEeCC--HH
Q 012720 138 FGTAMAAHVANKKSQLKVYMLMRDPAV-------CQSI-----------NEKHCNCRYFPEQ---KLPENVIATTD--AK 194 (458)
Q Consensus 138 mG~~iA~~La~aG~~~~V~v~~r~~~~-------~e~l-----------~~~g~~~~~~~~~---~l~~~i~a~~~--~~ 194 (458)
||..||..++.+| ++|+++|++++. +++. .+.|. +... ....+++.+++ +.
T Consensus 1 MG~giA~~~a~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~----~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFAG--HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGR----IDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhCC--CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCC----CChhhHHHHHhCeEeecCcchH
Confidence 7999999999999 999999999842 1111 11111 1100 11235666644 56
Q ss_pred hhcCCCCEEEEcCccc-c-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCE-EEEECcccHHHH
Q 012720 195 TALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFALEL 271 (458)
Q Consensus 195 ea~~~aDiVilaVp~~-~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~-~vl~gP~~a~ei 271 (458)
+++++||+||.||+.. . ...++.++.+.+++++++.+.+.++... .+.+.+..+..-+ .....|.+...
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~-------~la~~~~~p~r~~g~Hf~~Pp~~~~- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVT-------DLQRHVAHPERFLNAHWLNPAYLMP- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHH-------HHHhhcCCcccEEEEecCCccccCc-
Confidence 7789999999999963 3 5556678888999999987666555442 2333322210000 11122222110
Q ss_pred hccCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (458)
Q Consensus 272 ~~g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~ 350 (458)
...++.+ +.+++.++++.+++...|..+.+..|..+ +....+....++|+
T Consensus 147 ----lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G-------------------------fi~nri~~~~l~EA 197 (314)
T PRK08269 147 ----LVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG-------------------------YIVPRIQALAMNEA 197 (314)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC-------------------------cchHHHHHHHHHHH
Confidence 0111111 34788999999999999988877666432 12345667789999
Q ss_pred HHHHHHcCCCcccccc
Q 012720 351 RWLATKMGAKPATITG 366 (458)
Q Consensus 351 ~~la~a~Gi~~~~~~~ 366 (458)
+.++++.|++++++..
T Consensus 198 l~l~e~g~~~~e~iD~ 213 (314)
T PRK08269 198 ARMVEEGVASAEDIDK 213 (314)
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999999999887754
No 113
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.74 E-value=2.1e-07 Score=91.16 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=98.1
Q ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHHHHhhhh
Q 012720 142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD 221 (458)
Q Consensus 142 iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~ 221 (458)
||..|.++|..++|+.||++++.++...+.|... ...++ .++++++|+||+|||...+.++++++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID------------EASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS------------EEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee------------eccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhh
Confidence 6888999986689999999998887776666421 23334 4568999999999999999999999999
Q ss_pred cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--CCCCEEEEECccc-----HH-HHhccCCeEEEEcc-CCHHHHHHH
Q 012720 222 YVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALSGPSF-----AL-ELMNKLPTAMVVAS-KDRKLANAV 292 (458)
Q Consensus 222 ~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~--~~~~~~vl~gP~~-----a~-ei~~g~~t~v~i~g-~d~e~~e~l 292 (458)
+++++++|++++ ++= ..+.+.+.+.++. .+.....+.||.. +. +...|....++... .+.+.++.+
T Consensus 68 ~~~~~~iv~Dv~-SvK----~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 68 YLKPGAIVTDVG-SVK----APIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp GS-TTSEEEE---S-C----HHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred hcCCCcEEEEeC-CCC----HHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 999999999987 332 2334455555441 1223345566622 11 22345544333333 245788999
Q ss_pred HHHHhcCCCeEEEcCChHHHHHH
Q 012720 293 QQLLASKHLRISTSSDVTGVEIA 315 (458)
Q Consensus 293 ~~lL~~~g~~v~~~~di~~~~~~ 315 (458)
++++...|.++...+--..++..
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~ 165 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIM 165 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHH
Confidence 99999999998876544444443
No 114
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.73 E-value=4.7e-08 Score=98.35 Aligned_cols=96 Identities=11% Similarity=0.222 Sum_probs=75.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|+||..+|.+|..-| ++|.+|+|..+... +.. ......+++++++++|+|+++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG--~~V~~~~~~~~~~~-----~~~-----------~~~~~~~l~e~l~~aDvvv~~ 197 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWG--FPLRCWSRSRKSWP-----GVQ-----------SFAGREELSAFLSQTRVLINL 197 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCCCC-----Cce-----------eecccccHHHHHhcCCEEEEC
Confidence 579999999999999999999877 99999998753211 100 001123788899999999999
Q ss_pred Ccc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720 207 MPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 207 Vp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t 240 (458)
+|. .++..++. +....++++.++|++..|-..++
T Consensus 198 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 198 LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred CCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCH
Confidence 995 56788774 46778999999999999876653
No 115
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.73 E-value=3.7e-08 Score=105.87 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=90.3
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.|.|++. . +.+.++. .++|+|||+|+||..+|.+|..-| ++|.+|++.... +....
T Consensus 112 R~~~~~~~~~~~g~W~~~-----~---~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~ 178 (525)
T TIGR01327 112 RNIPQADASLKEGEWDRK-----A---FMGTELY--GKTLGVIGLGRIGSIVAKRAKAFG--MKVLAYDPYISP-ERAEQ 178 (525)
T ss_pred cCHHHHHHHHHcCCcccc-----c---cCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence 555667778888877641 1 1234454 579999999999999999999777 999999985321 11222
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+ +...++++++++++|+|++++|. ..++.++ .+....+++++++|+++.|-..++
T Consensus 179 ~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 179 LG--------------VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred cC--------------CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCH
Confidence 11 23345789999999999999995 4677777 456678999999999999876653
No 116
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.72 E-value=3.9e-08 Score=98.44 Aligned_cols=117 Identities=11% Similarity=0.231 Sum_probs=85.7
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.|.|.. . .+.++. .++|+|||+|+||..+|.+|..-| ++|.+|+|+...
T Consensus 98 R~i~~~~~~~~~g~w~~------~----~~~~L~--gktvgIiG~G~IG~~vA~~l~afG--~~V~~~~r~~~~------ 157 (303)
T PRK06436 98 KNICENNYNMKNGNFKQ------S----PTKLLY--NKSLGILGYGGIGRRVALLAKAFG--MNIYAYTRSYVN------ 157 (303)
T ss_pred cChHHHHHHHHcCCCCC------C----CCCCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcc------
Confidence 45556677777776653 1 122343 679999999999999999887667 999999997421
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+.. ....+++++++++|+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus 158 ~~~~-------------~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 158 DGIS-------------SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred cCcc-------------cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 1110 1124788999999999999995 5577776 346777999999999998866653
No 117
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.69 E-value=5.7e-08 Score=104.47 Aligned_cols=122 Identities=14% Similarity=0.198 Sum_probs=90.2
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.|.|++ . ...+.++. .++|+|||+|+||..+|.+|..-| ++|.+|+|.... +....
T Consensus 114 R~~~~~~~~~~~g~W~~------~--~~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~ 180 (526)
T PRK13581 114 RNIPQAHASLKAGKWER------K--KFMGVELY--GKTLGIIGLGRIGSEVAKRAKAFG--MKVIAYDPYISP-ERAAQ 180 (526)
T ss_pred cCHHHHHHHHHcCCCCc------c--CccccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence 45566677777787764 1 11234454 679999999999999999999877 999999985421 12222
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+ +... +++++++.+|+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus 181 ~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde 237 (526)
T PRK13581 181 LG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDE 237 (526)
T ss_pred cC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCH
Confidence 11 2333 788999999999999996 4677777 567888999999999999876653
No 118
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.67 E-value=1.9e-07 Score=92.20 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=108.4
Q ss_pred hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCC
Q 012720 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGAD 201 (458)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aD 201 (458)
-+....+|+|||.|+||..+|..|.++| |.|...+|.+ .+.+++... ....+++.+.+ +..|
T Consensus 48 ~~k~tl~IaIIGfGnmGqflAetli~aG--h~li~hsRsd--yssaa~~yg-------------~~~ft~lhdlcerhpD 110 (480)
T KOG2380|consen 48 QWKATLVIAIIGFGNMGQFLAETLIDAG--HGLICHSRSD--YSSAAEKYG-------------SAKFTLLHDLCERHPD 110 (480)
T ss_pred hcccceEEEEEecCcHHHHHHHHHHhcC--ceeEecCcch--hHHHHHHhc-------------ccccccHHHHHhcCCC
Confidence 3444579999999999999999999999 9999999987 334443211 11223444443 5789
Q ss_pred EEEEcCccccHHHHHHhhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHHHHhccCCeE
Q 012720 202 YCLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTA 278 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~-l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~ei~~g~~t~ 278 (458)
+|++||....++.++...-.. ++.++++++...=-.++ .+.+.+.++... .-+..+.||....+..+|.+-.
T Consensus 111 vvLlctsilsiekilatypfqrlrrgtlfvdvlSvKefe-----k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 111 VVLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFE-----KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred EEEEEehhhhHHHHHHhcCchhhccceeEeeeeecchhH-----HHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 999999999999998877555 77899988765311221 244555555421 1123467888666656666643
Q ss_pred EEEc-----cCCHHHHHHHHHHHhcCCCeEEE
Q 012720 279 MVVA-----SKDRKLANAVQQLLASKHLRIST 305 (458)
Q Consensus 279 v~i~-----g~d~e~~e~l~~lL~~~g~~v~~ 305 (458)
+.-. ...++.+|.+-++|...|.+...
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVe 217 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVE 217 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEE
Confidence 2211 12378999999999988877543
No 119
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.62 E-value=1.8e-07 Score=94.55 Aligned_cols=126 Identities=14% Similarity=0.170 Sum_probs=89.3
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.|.|... +... ..+.++. .++|||||+|++|..+|+++. .+++.+|.+|+|.... +....
T Consensus 116 R~i~~~~~~~~~g~w~~~--~~~~---~~g~~L~--gktvGIiG~G~IG~~va~~l~-~~fgm~V~~~~~~~~~-~~~~~ 186 (323)
T PRK15409 116 RRVVEVAERVKAGEWTAS--IGPD---WFGTDVH--HKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHK-EAEER 186 (323)
T ss_pred cCHHHHHHHHHcCCCccc--Cccc---cccCCCC--CCEEEEEcccHHHHHHHHHHH-hcCCCEEEEECCCCch-hhHHh
Confidence 555677888888888641 1111 1244554 679999999999999999986 2334899999987421 11111
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+ +.. .++++++++||+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus 187 ~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde 243 (323)
T PRK15409 187 FN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDE 243 (323)
T ss_pred cC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCH
Confidence 11 122 3788999999999999995 5677777 346788999999999999876653
No 120
>PLN02306 hydroxypyruvate reductase
Probab=98.60 E-value=2.1e-07 Score=96.17 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=91.1
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHH-
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSI- 168 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l- 168 (458)
++-...++.++.|.|.+ |...+ ..+.++. .++|||||+|.+|..+|++|..+ ++.+|..||+.... .+..
T Consensus 136 R~i~~~~~~~~~g~w~~---~~~~~--~~g~~L~--gktvGIiG~G~IG~~vA~~l~~~-fGm~V~~~d~~~~~~~~~~~ 207 (386)
T PLN02306 136 RRIVEADEFMRAGLYEG---WLPHL--FVGNLLK--GQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQSTRLEKFV 207 (386)
T ss_pred hChHHHHHHHHcCCCcc---ccccc--cCCcCCC--CCEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCCchhhhhhh
Confidence 45556677778887754 43211 1234444 67999999999999999998632 34999999987532 1111
Q ss_pred HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720 169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 169 ~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t 240 (458)
...+....-... .+..+....+++++++.+|+|++++|. ..++.++. +....|+++.++|+++.|-..++
T Consensus 208 ~~~~~~l~~~~~--~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe 279 (386)
T PLN02306 208 TAYGQFLKANGE--QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDE 279 (386)
T ss_pred hhhccccccccc--ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCH
Confidence 111100000000 000122235899999999999999995 56777774 46788999999999999876653
No 121
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.59 E-value=1e-06 Score=84.40 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=111.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHH-HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~-l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
|+|+|||+|.|..++++.+.+.|. ..++..+..+...... ++..| ++.+.+..+.++.+|+++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g--------------~~~~~~n~~~~~~s~v~~ 66 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALG--------------VKTVFTNLEVLQASDVVF 66 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCC--------------ceeeechHHHHhhcccee
Confidence 689999999999999999999884 2345555553322222 44433 233333367788999999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS- 283 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g- 283 (458)
++||.+.+.+++.++...+..+.+|+++.-|+...+ +.+.++.. .-.+...|+.+..+..|.. .+..+.
T Consensus 67 ~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~-------l~~~l~~~--~rviRvmpNtp~~v~eg~s-v~~~g~~ 136 (267)
T KOG3124|consen 67 LSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSS-------LESKLSPP--TRVIRVMPNTPSVVGEGAS-VYAIGCH 136 (267)
T ss_pred EeecchhHHHHhhcCccccccceEEEEEeecccHHH-------HHHhcCCC--CceEEecCCChhhhhcCcE-EEeeCCC
Confidence 999999999999999887778899999988887642 33444421 2246678888877766643 223333
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720 284 KDRKLANAVQQLLASKHLRISTSSDVT 310 (458)
Q Consensus 284 ~d~e~~e~l~~lL~~~g~~v~~~~di~ 310 (458)
...+..+.++++|+..|+...+.++.+
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred cchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 234566889999999998887765543
No 122
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.58 E-value=2e-07 Score=93.47 Aligned_cols=135 Identities=15% Similarity=0.267 Sum_probs=97.1
Q ss_pred ccccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720 89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (458)
Q Consensus 89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l 168 (458)
.-++-+.++|.++.|.| . |..-| ..+...+ .++|+|+|+|++|..+|.+|..-| ..+....|++..-+..
T Consensus 132 ~~R~~~~g~~~~~~g~w-~---~~~~~--~~g~~~~--gK~vgilG~G~IG~~ia~rL~~Fg--~~i~y~~r~~~~~~~~ 201 (336)
T KOG0069|consen 132 LLRRFSEGNEMVRNGGW-G---WAGGW--PLGYDLE--GKTVGILGLGRIGKAIAKRLKPFG--CVILYHSRTQLPPEEA 201 (336)
T ss_pred HHhhhhhhhhhhhcCCc-c---ccCCc--ccccccc--CCEEEEecCcHHHHHHHHhhhhcc--ceeeeecccCCchhhH
Confidence 34778889999999988 2 22222 2344454 579999999999999999999755 6666677876544444
Q ss_pred HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 012720 169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQ 246 (458)
Q Consensus 169 ~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t~~~l~e 246 (458)
.+.+.. ..|.++.+.++|+|++|+|. ..+.++++ ++...++++.+||++..|-..+. +.+.+
T Consensus 202 ~~~~~~---------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide-~~l~e 265 (336)
T KOG0069|consen 202 YEYYAE---------------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDE-EALVE 265 (336)
T ss_pred HHhccc---------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccH-HHHHH
Confidence 332211 23777888999999999995 56888885 57888999999999998876653 33344
Q ss_pred HHH
Q 012720 247 IIP 249 (458)
Q Consensus 247 ~l~ 249 (458)
.+.
T Consensus 266 aL~ 268 (336)
T KOG0069|consen 266 ALK 268 (336)
T ss_pred HHh
Confidence 443
No 123
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.57 E-value=3.7e-07 Score=95.18 Aligned_cols=120 Identities=15% Similarity=0.228 Sum_probs=88.9
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.|.|.+ .. ..+.++. .++|||||+|++|..+|.++..-| .+|..|++.+.. ..
T Consensus 125 R~~~~~~~~~~~g~w~~------~~--~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fG--m~V~~~d~~~~~----~~ 188 (409)
T PRK11790 125 RGIPEKNAKAHRGGWNK------SA--AGSFEVR--GKTLGIVGYGHIGTQLSVLAESLG--MRVYFYDIEDKL----PL 188 (409)
T ss_pred cChHHHHHHHHcCcccc------cc--cCcccCC--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCccc----cc
Confidence 45556677777776654 11 1233444 679999999999999999998766 999999986421 00
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
+ .+....+++++++.||+|++++|. ..+..++ .+....+++++++|+++.|-..++
T Consensus 189 -~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 189 -G-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246 (409)
T ss_pred -C-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCH
Confidence 0 123345889999999999999995 5577777 446788999999999999876654
No 124
>PLN02928 oxidoreductase family protein
Probab=98.55 E-value=2.7e-07 Score=94.23 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=74.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|.||..+|.+|..-| ++|++|+|+...... ...+........ +........+++++++++|+|+++
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG--~~V~~~dr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFG--VKLLATRRSWTSEPE-DGLLIPNGDVDD--LVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCChhhh-hhhccccccccc--cccccCcccCHHHHHhhCCEEEEC
Confidence 679999999999999999999777 999999987321111 000000000000 000000124788999999999999
Q ss_pred Ccc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 207 Vp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
+|. ..+..++ .+....++++.++|+++.|-..++
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde 269 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDY 269 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCH
Confidence 995 4567766 456778999999999999866653
No 125
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.55 E-value=9.3e-07 Score=83.02 Aligned_cols=167 Identities=10% Similarity=0.203 Sum_probs=96.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+|||+ |.||..++..|.++| +.|+ ++++|+||+|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g--~~v~----------------------------------------~~~~DlVila 38 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG--LGVY----------------------------------------IKKADHAFLS 38 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC--CEEE----------------------------------------ECCCCEEEEe
Confidence 68999998 999999999999999 8875 1468999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-cCC
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-SKD 285 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~-g~d 285 (458)
+|.....++++++.+ +|+++.. += ..+.+...+.+| ...+.||..+..... . ..++.. ..+
T Consensus 39 vPv~~~~~~i~~~~~------~v~Dv~S-vK----~~i~~~~~~~vg-----~HPMfGp~~a~~~lf-~-~~iv~~~~~~ 100 (197)
T PRK06444 39 VPIDAALNYIESYDN------NFVEISS-VK----WPFKKYSGKIVS-----IHPLFGPMSYNDGVH-R-TVIFINDISR 100 (197)
T ss_pred CCHHHHHHHHHHhCC------eEEeccc-cC----HHHHHhcCCEEe-----cCCCCCCCcCccccc-c-eEEEECCCCC
Confidence 999998888887642 5777652 11 111111111122 223457766542111 1 222232 345
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHH---HHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHc-CCCc
Q 012720 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM-GAKP 361 (458)
Q Consensus 286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~~~ka---lkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~-Gi~~ 361 (458)
++..+.++++++ |.++...+--..++.... +-++++.+.. . ++ ..+....+....++++.. +.++
T Consensus 101 ~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~al~--~-~~------~~~~t~~fr~l~ria~~~~~~~p 169 (197)
T PRK06444 101 DNYLNEINEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISMILK--D-IK------SDIKTGSFDKLLEVSEIKEKENW 169 (197)
T ss_pred HHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHc--c-CC------CCCCCccHHHHHHHHHHhccCCH
Confidence 566788999998 667766554444443332 2233222111 1 11 122334666666676665 4455
Q ss_pred cccc
Q 012720 362 ATIT 365 (458)
Q Consensus 362 ~~~~ 365 (458)
+.+.
T Consensus 170 ~lw~ 173 (197)
T PRK06444 170 EVFN 173 (197)
T ss_pred HHHH
Confidence 5443
No 126
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.52 E-value=2.4e-07 Score=93.35 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=86.5
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...+|.++.+.|.+...|. +..+.+.++. .++|+|||.|.+|..+|+++..=| .+|..|++.... ..
T Consensus 115 R~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~l~--gktvgIiG~G~IG~~va~~l~~fg--~~V~~~~~~~~~--~~-- 184 (314)
T PRK06932 115 HSLMGWYRDQLSDRWATCKQFC--YFDYPITDVR--GSTLGVFGKGCLGTEVGRLAQALG--MKVLYAEHKGAS--VC-- 184 (314)
T ss_pred hChHHHHHHHHcCCCCcCcccc--ccCCcccccC--CCEEEEECCCHHHHHHHHHHhcCC--CEEEEECCCccc--cc--
Confidence 4555667777788776421111 0011122343 679999999999999999997545 999999875321 00
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
. . ...+++++++.||+|++++|. ..+..++ .+....++++.++|+++.|-..++
T Consensus 185 -~--------------~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde 240 (314)
T PRK06932 185 -R--------------E-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDE 240 (314)
T ss_pred -c--------------c-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence 0 0 013788999999999999994 5677777 456778999999999999876653
No 127
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.52 E-value=1.8e-07 Score=94.12 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=87.9
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.+.|....-|.. ....+.++. .++|||||+|++|..+|.++..=| .+|..|+|..... .
T Consensus 113 R~~~~~~~~~~~g~w~~~~~~~~--~~~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fg--m~V~~~d~~~~~~----~ 182 (311)
T PRK08410 113 GRINYYDRYVKSGEYSESPIFTH--ISRPLGEIK--GKKWGIIGLGTIGKRVAKIAQAFG--AKVVYYSTSGKNK----N 182 (311)
T ss_pred hCHHHHHHHHHcCCCCcCCCccc--cCccccccC--CCEEEEECCCHHHHHHHHHHhhcC--CEEEEECCCcccc----c
Confidence 55566778888887764110100 000123444 679999999999999999997544 9999999864210 0
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+ +. ..+++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus 183 ~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe 239 (311)
T PRK08410 183 EE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNE 239 (311)
T ss_pred cC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence 01 11 23789999999999999995 5677777 446788999999999999976654
No 128
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.50 E-value=2.4e-07 Score=93.43 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=87.9
Q ss_pred ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++-...++.++.|.|.+...+. ...+.+.++. .++|||||+|++|..+|++|..-| .+|..|+|....
T Consensus 116 R~~~~~~~~~~~g~W~~~~~~~--~~~~~~~~l~--gktvgIiG~G~IG~~vA~~l~~fg--m~V~~~~~~~~~------ 183 (317)
T PRK06487 116 TRLPDYQQAVAAGRWQQSSQFC--LLDFPIVELE--GKTLGLLGHGELGGAVARLAEAFG--MRVLIGQLPGRP------ 183 (317)
T ss_pred cCHHHHHHHHHcCCCccCcccc--cccCcccccC--CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCCc------
Confidence 5566777888888886521111 0011123344 679999999999999999998555 999999986321
Q ss_pred hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.. .. ..+++++++.+|+|++++|. ..++.++. +....++++.++|+++.|-..++
T Consensus 184 ~~--------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 184 AR--------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE 240 (317)
T ss_pred cc--------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 00 00 12788999999999999995 56777773 46778999999999999876653
No 129
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.47 E-value=6.8e-07 Score=80.07 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|+|+|.||..++..|.+.| .++|++|+|+++..+.+.+.... .+ . .....+.+++++++|+||.|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~-~~-----~---~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE-LG-----I---AIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh-cc-----c---ceeecchhhccccCCEEEeC
Confidence 578999999999999999999885 27899999999887776554211 00 0 01223666667899999999
Q ss_pred CccccH--HHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFS--SSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v--~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|.... ..+... ...+++++++++++
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~~~v~D~~ 116 (155)
T cd01065 89 TPVGMKPGDELPLP-PSLLKPGGVVYDVV 116 (155)
T ss_pred cCCCCCCCCCCCCC-HHHcCCCCEEEEcC
Confidence 997653 222111 22357889999986
No 130
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.46 E-value=1.4e-06 Score=85.83 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=68.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~-V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
||||+|||+|.||..++..|.+.+.+++ +.+++|++++++.+.+.. +....++.++.+.++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-------------~~~~~~~~~ell~~~DvVvi 67 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-------------GAKACLSIDELVEDVDLVVE 67 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-------------CCeeECCHHHHhcCCCEEEE
Confidence 4799999999999999999987531255 457899998877765521 12355688887789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
|++...+.+++..+.. .|..++.++.|
T Consensus 68 ~a~~~~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 68 CASVNAVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred cCChHHHHHHHHHHHH---cCCCEEEEchH
Confidence 9998888887766554 34445555543
No 131
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.42 E-value=7.5e-07 Score=91.79 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=72.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|||||+|+||..+|.+|..-| ++|.+||+..... . + .. ...++++++++||+|+++
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G--~~V~~~Dp~~~~~----~-~-------------~~-~~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLG--WKVLVCDPPRQEA----E-G-------------DG-DFVSLERILEECDVISLH 174 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCccccc----c-c-------------Cc-cccCHHHHHhhCCEEEEe
Confidence 579999999999999999999888 9999999854311 0 1 01 123788988999999999
Q ss_pred Cccc-----cHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 207 MPVQ-----FSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 207 Vp~~-----~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
+|.. .+..++ .+....+++++++|+++.|-..++
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 9953 366666 346778999999999999876653
No 132
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.40 E-value=1.6e-06 Score=85.66 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
++||+|||+|.||..++..|.+...+++|. +|+|++++++.+.+.... ....++.++++.++|+|++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~------------~~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR------------PPPVVPLDQLATHADIVVE 73 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC------------CcccCCHHHHhcCCCEEEE
Confidence 589999999999999999998741127776 789998887766553100 1234578888889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|+|...+.++...+. +.|..++..+
T Consensus 74 ~tp~~~h~e~~~~aL---~aGk~Vi~~s 98 (271)
T PRK13302 74 AAPASVLRAIVEPVL---AAGKKAIVLS 98 (271)
T ss_pred CCCcHHHHHHHHHHH---HcCCcEEEec
Confidence 999888877776654 3466565554
No 133
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.40 E-value=9.6e-07 Score=90.79 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=72.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|||||+|+||+.+|.+|..-| ++|.+||+.... .+.. . ...++++++++||+|+++
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G--~~V~~~dp~~~~------~~~~------------~-~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALG--IKTLLCDPPRAD------RGDE------------G-DFRSLDELVQEADILTFH 174 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCcccc------cccc------------c-ccCCHHHHHhhCCEEEEe
Confidence 679999999999999999999877 999999975321 0100 0 123788999999999999
Q ss_pred Ccccc-----HHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720 207 MPVQF-----SSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 207 Vp~~~-----v~~vl-~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
+|... +..++ ++....+++++++|+++.|-..++
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe 214 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDN 214 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCH
Confidence 99533 66666 456778999999999999876653
No 134
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.39 E-value=1.8e-06 Score=86.61 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
||||+|||+|.||..+|..++..|.. +|.++|++++.++.....-.... ........++.++|.+ ++++||+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~d~~-~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAA--PVEGFDTKITGTNDYE-DIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhh--hhcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence 57999999999999999999998832 99999998865543221100000 0001122455556775 47999999998
Q ss_pred Ccc----------------ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 207 Vp~----------------~~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+.. ..+.++++++.+..+ +.++|..+|..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~-~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP-DAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence 631 125566666777664 56677777744
No 135
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.36 E-value=1.6e-06 Score=86.37 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|.||..+|..|...| .+|++++|++++.+.+.+.+.. .....++.+.++++|+||.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARITEMGLI------------PFPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCCe------------eecHHHHHHHhccCCEEEEC
Confidence 469999999999999999999988 8999999998776665543321 01123566778899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+|..-+. .+....++++.++|+++.
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9975321 234556788999999874
No 136
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.34 E-value=1.4e-06 Score=91.47 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=58.8
Q ss_pred CeEEEECcchHHHHHHH--HH----HhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 128 NKVVVLGGGSFGTAMAA--HV----ANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~--~L----a~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
+||+|||+|+||.+++. .+ +.+| ++|.+||++++.++.+..... .+......+.++..++|.++++++||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g--~eV~L~Did~e~l~~~~~~~~--~~~~~~~~~~~I~~ttD~~eal~~AD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG--STIALMDIDEERLETVEILAK--KIVEELGAPLKIEATTDRREALDGAD 76 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCC--CEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhcCCC
Confidence 58999999999998766 34 3445 899999999988776655321 12222223456788899999999999
Q ss_pred EEEEcCccc
Q 012720 202 YCLHAMPVQ 210 (458)
Q Consensus 202 iVilaVp~~ 210 (458)
+||++++..
T Consensus 77 ~Vi~ai~~~ 85 (423)
T cd05297 77 FVINTIQVG 85 (423)
T ss_pred EEEEeeEec
Confidence 999999953
No 137
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.31 E-value=3.6e-05 Score=73.65 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=102.1
Q ss_pred CCeEEEECcchH--------------------HHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCC
Q 012720 127 TNKVVVLGGGSF--------------------GTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQ 181 (458)
Q Consensus 127 ~~kI~IIGaG~m--------------------G~~iA~~La~aG~~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~ 181 (458)
+|||+|.|+|+- |..||..++++| |||.+.+.+.+ +.+++...|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG--HDVVLaePn~d~~dd~~w~~vedAG--------- 69 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG--HDVVLAEPNRDIMDDEHWKRVEDAG--------- 69 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC--CcEEeecCCccccCHHHHHHHHhcC---------
Confidence 478999999973 788999999999 99999987653 344444443
Q ss_pred CCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE
Q 012720 182 KLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI 260 (458)
Q Consensus 182 ~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~ 260 (458)
+.+++|-.++++.+++.++.+|- ..+-.+.++|.+++++|.+|.+.- ++++- .+..-++..+.....++.
T Consensus 70 -----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTC-T~sp~---vLy~~LE~~Lr~kR~dVG 140 (340)
T COG4007 70 -----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTC-TVSPV---VLYYSLEGELRTKREDVG 140 (340)
T ss_pred -----cEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccc-cCchh---HHHHHhhhhhcCchhhcC
Confidence 56776767788999999999996 478889999999999998876532 34432 122223222221111111
Q ss_pred EEE-----CcccHHH---HhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC
Q 012720 261 ALS-----GPSFALE---LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307 (458)
Q Consensus 261 vl~-----gP~~a~e---i~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~ 307 (458)
+.+ =|+...+ +..|..+.. ..-..++..+++.++.++.|..++..+
T Consensus 141 vssmHPAgvPGtp~h~~yviagr~t~g-~elATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 141 VSSMHPAGVPGTPQHGHYVIAGRSTEG-KELATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccccCCCCCCCCCCCceEEEeccCCCc-eeeccHHHHHHHHHHHHhcCCceEecC
Confidence 111 1222221 011111110 011247889999999999999988764
No 138
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.30 E-value=4.4e-06 Score=83.93 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=69.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+|||+|.||+.+|..|+..| + +|+++|+.++..+...-.-.... ........++.++|.++ ++++|+||++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g--~~~VvlvDi~~~l~~g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKE--LADLVLLDVVEGIPQGKALDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcC--CCeEEEEeCCCChhHHHHHhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 69999999999999999999988 5 89999997654331110000000 00111235667788877 7899999999
Q ss_pred Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+... .++++++++.++. ++.++|..+|-.
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 9831 2444556666664 567788888744
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.22 E-value=4e-06 Score=84.53 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=66.5
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||+|.||..++..+.. .+ ..+|++|+|++++++++.+.-.. . ...+.+..+++++++++|+|+.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~-~-------g~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRA-Q-------GFDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHh-c-------CCceEEeCCHHHHHhcCCEEEE
Confidence 4789999999999999986654 23 27899999999998888764210 0 0125566788888999999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|+++. ..++. ...+++|++ |++.
T Consensus 196 aT~s~--~pvl~--~~~l~~g~~-i~~i 218 (314)
T PRK06141 196 ATLST--EPLVR--GEWLKPGTH-LDLV 218 (314)
T ss_pred eeCCC--CCEec--HHHcCCCCE-EEee
Confidence 99865 22222 245678884 4444
No 140
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=2.9e-06 Score=84.34 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=59.2
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||.| .||.+||.+|.++| +.|++|++... +++++++.||+||.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~g--atVtv~~~~t~----------------------------~l~e~~~~ADIVIs 208 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAH--CSVTVVHSRST----------------------------DAKALCRQADIVVA 208 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC--CEEEEECCCCC----------------------------CHHHHHhcCCEEEE
Confidence 6799999996 99999999999999 99999987531 56777889999999
Q ss_pred cCccc-cHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQ-FSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~-~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|++.. .+...+ +++|++||+++
T Consensus 209 avg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ecCChhcccHhh------ccCCcEEEEec
Confidence 99964 344332 78899999986
No 141
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.20 E-value=8e-07 Score=76.97 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=64.5
Q ss_pred HHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCcchhhhhccCCCccchHHHHhhC-----CCChHHH
Q 012720 328 IVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRLGS-----GEKLDDI 400 (458)
Q Consensus 328 ~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~--g~gd~~~t~~~~~srn~~~g~~l~~-----g~~~e~~ 400 (458)
.+..+|+.+|.+......++.|+..+|++.|+++++++++. +.+.... .+++ ....+.+ +++++
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~------~~~~-~~~~~~~~~~~~~f~l~-- 72 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWM------LKNR-APRMILNGDFDPGFSLD-- 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHH------HHHH-HHHHHHTTTTCSSSBHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchH------HHhh-hhhhhhcccCCccchhH--
Confidence 44567788899999999999999999999999999998752 2222110 0111 1111222 23333
Q ss_pred HhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720 401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (458)
Q Consensus 401 ~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~ 440 (458)
...||+++++++|++.|+++|+.+.+.+++..
T Consensus 73 --------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 104 (122)
T PF14833_consen 73 --------LARKDLRLALDLAKEAGVPLPLGSAARQLYQA 104 (122)
T ss_dssp --------HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred --------hhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999999888743
No 142
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.19 E-value=1e-05 Score=80.93 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+|++|||+|.+|..++..|...| .+|++++|++++.+.....|... ...+++.+.+.++|+||.|
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~G~~~------------~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEMGLSP------------FHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCee------------ecHHHHHHHhCCCCEEEEC
Confidence 479999999999999999999988 89999999987766665544211 1113566778899999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+|...+ -++....++++.+||++..
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEcc
Confidence 986422 2345566788999999863
No 143
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.17 E-value=1.1e-05 Score=71.82 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=72.4
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+|||+ |.+|..+|..|...+...++.++|++++.++....+-.+.... .+.+.....+..+.++++|+||++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~----~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP----LPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG----STEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh----cccccccccccccccccccEEEEe
Confidence 79999999 9999999999999886678999999987655333211000000 111233333445568999999998
Q ss_pred Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720 207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (458)
Q Consensus 207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg 253 (458)
.-.. -++++.+.+.++- ++.+++..+|-++ .+...+.+..+
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-----~~t~~~~~~s~ 133 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-----VMTYVAQKYSG 133 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-----HHHHHHHHHHT
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-----HHHHHHHHhhC
Confidence 7431 1333444555555 5667777777433 34455555433
No 144
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.17 E-value=2.9e-05 Score=66.32 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=74.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL 204 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVi 204 (458)
+||+|||+|.+|......+.+...+.+|. +++++++..+.+.+.. ++..++|.+++++ +.|+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-------------GIPVYTDLEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-------------TSEEESSHHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-------------cccchhHHHHHHHhhcCCEEE
Confidence 48999999999999998888874336665 7899998888775532 2346778888876 799999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc--chhhhHHHHHHH
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQIIPQ 250 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~--~t~~~l~e~l~~ 250 (458)
+++|.....+.+..+.. .|..| .+-|-+.. ++.+.+.+..++
T Consensus 68 I~tp~~~h~~~~~~~l~---~g~~v-~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALE---AGKHV-LVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp EESSGGGHHHHHHHHHH---TTSEE-EEESSSSSSHHHHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHH---cCCEE-EEEcCCcCCHHHHHHHHHHHHH
Confidence 99999887777766554 24433 35554433 333444444433
No 145
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.16 E-value=1.4e-05 Score=80.44 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|.||..++..|...| ..+|++++|+.++++.+.+.... .+...++..+++.++|+||.|
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g~-----------~~~~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELGG-----------NAVPLDELLELLNEADVVISA 245 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcCC-----------eEEeHHHHHHHHhcCCEEEEC
Confidence 589999999999999999998865 27899999999887777654110 111123556777899999999
Q ss_pred CccccHHHHHHhhhhcC-CCCCeEEEecc
Q 012720 207 MPVQFSSSFLEGISDYV-DPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l-~~~~ivV~~sn 234 (458)
++......++..+.... .++.++|+++.
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 99866655555543322 35678889885
No 146
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.15 E-value=8.7e-06 Score=79.78 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=76.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+||+|||.|+-|.+=|.+|.++| .+|++--|.... .+...+.|. .+ -+.+|+++.+|+|++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSG--lnViiGlr~g~~s~~kA~~dGf--------------~V-~~v~ea~k~ADvim~ 80 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSG--LNVIIGLRKGSSSWKKAKEDGF--------------KV-YTVEEAAKRADVVMI 80 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcC--CcEEEEecCCchhHHHHHhcCC--------------Ee-ecHHHHhhcCCEEEE
Confidence 579999999999999999999999 888876666543 455555553 22 278899999999999
Q ss_pred cCccccHHHHHH-hhhhcCCCCCeEEEeccCCCc
Q 012720 206 AMPVQFSSSFLE-GISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 206 aVp~~~v~~vl~-~i~~~l~~~~ivV~~snGi~~ 238 (458)
-+|+....++++ +|.|.+++|..+. .+-|+..
T Consensus 81 L~PDe~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi 113 (338)
T COG0059 81 LLPDEQQKEVYEKEIAPNLKEGAALG-FAHGFNI 113 (338)
T ss_pred eCchhhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence 999999999997 7999999998654 5557765
No 147
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.15 E-value=7.9e-06 Score=71.08 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=73.1
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
|||+|+|+ |.||..++..+.+.. ++++. +++|...... |.....+.+.. +.++.+++++++++..+|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~~~~~-----g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKPSAKV-----GKDVGELAGIG-PLGVPVTDDLEELLEEADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTTSTTT-----TSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCCcccc-----cchhhhhhCcC-CcccccchhHHHhcccCCEEEE
Confidence 68999999 999999999999843 27755 5677762100 11111111111 3456678899999989999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF 267 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~ 267 (458)
++-...+.+.++...++ +..+|..+.|+..+.. +.+++. .. ...++..|++
T Consensus 74 fT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~----~~l~~~-a~---~~~vl~a~Nf 124 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI----DELEEL-AK---KIPVLIAPNF 124 (124)
T ss_dssp ES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH----HHHHHH-TT---TSEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH----HHHHHH-hc---cCCEEEeCCC
Confidence 88666666666665543 6777777778875433 233332 22 1456776654
No 148
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.14 E-value=6.3e-06 Score=77.50 Aligned_cols=170 Identities=12% Similarity=0.206 Sum_probs=101.7
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----------cCCCccCCCCCC----CCceE
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRYFPEQKL----PENVI 188 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----------g~~~~~~~~~~l----~~~i~ 188 (458)
|..++.|+|||+|.||+.+|...+.+| ++|+++|++++.+.+..+. +..........+ -..++
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg--~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSG--LNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcC--CceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 444678999999999999999999999 9999999999866543321 111000000000 12355
Q ss_pred EeCCHHhhcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH--HhCCCCCCEEEEEC
Q 012720 189 ATTDAKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSG 264 (458)
Q Consensus 189 a~~~~~ea~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~--~lg~~~~~~~vl~g 264 (458)
..++..++++++|+||-++-. +-...++++|....++.+++.+-+..+... .++..+.+ +++. -....
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt---~ia~~~~~~srf~G-----lHFfN 157 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLT---DIASATQRPSRFAG-----LHFFN 157 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHH---HHHhhccChhhhce-----eeccC
Confidence 677888899999999998864 345667788888888888776655433321 11111111 1111 12234
Q ss_pred cccHH---HHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720 265 PSFAL---ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVT 310 (458)
Q Consensus 265 P~~a~---ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~ 310 (458)
|.-.. |+..+. .-.++.+..+..+-+..|....-..|..
T Consensus 158 PvPvMKLvEVir~~-------~TS~eTf~~l~~f~k~~gKttVackDtp 199 (298)
T KOG2304|consen 158 PVPVMKLVEVIRTD-------DTSDETFNALVDFGKAVGKTTVACKDTP 199 (298)
T ss_pred CchhHHHhhhhcCC-------CCCHHHHHHHHHHHHHhCCCceeecCCC
Confidence 43222 222111 1246777777777776676655555543
No 149
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.12 E-value=1.7e-05 Score=80.10 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=68.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+||+|||+|.||..+|..|+..|. .+|.++|++++.++...-...... .-......+..+++.+ ++++||+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~--~~~~~~~~i~~~~d~~-~l~~ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFS--TLVGSNINILGTNNYE-DIKDSDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhc--cccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence 5799999999999999999998874 589999998765432211110000 0011123455556776 57999999999
Q ss_pred C--ccc--------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 207 M--PVQ--------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 207 V--p~~--------------~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
. +.. -+.++++.+.++. ++.+++..+|..
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 9 321 2445666666664 566777777744
No 150
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.11 E-value=1.5e-05 Score=80.56 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=69.3
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
|-+.+||+|||+|.||..+|..++..|. .+|.++|++++.++ .+...+.. .-...+..++.++|.+ ++++||
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~----~~~~~~~~I~~~~d~~-~l~~aD 76 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSN----VIAGSNSKVIGTNNYE-DIAGSD 76 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhh----hccCCCeEEEECCCHH-HhCCCC
Confidence 3345799999999999999999998883 38999999887542 22111110 0011123466667875 579999
Q ss_pred EEEEcCcc---------------------ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 202 YCLHAMPV---------------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 202 iVilaVp~---------------------~~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+||++.-. .-+.++++++.++.+ +.+++..+|..
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p-~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCP-NAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence 99997621 014555566666664 45777777744
No 151
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.03 E-value=1e-05 Score=83.91 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=72.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (458)
.++|+|||.|++|.+-|..|...| ++|++--|.. +..+...+.|. .+ .+.+|+++.|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSG--vnVvvglr~~~id~~~~s~~kA~~dGF--------------~v-~~~~Ea~~~A 98 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KV-GTYEELIPQA 98 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCcccc--ceeEEeccccccccccchHHHHHhcCC--------------cc-CCHHHHHHhC
Confidence 489999999999999999999999 8998655542 23333333342 12 3688899999
Q ss_pred CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
|+|++.+|......+.+++.+++++|..+. .+-|+..
T Consensus 99 DvVviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487)
T PRK05225 99 DLVINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487)
T ss_pred CEEEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence 999999998877778889999999998765 4447654
No 152
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.02 E-value=1.9e-05 Score=81.23 Aligned_cols=86 Identities=19% Similarity=0.278 Sum_probs=62.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
||||.|||+|.+|+..|..|+++|. .+|++.+|+.++++++..... ..+. ..+ .+.-...+.+++++.|+||.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~---~~v--D~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEA---LQV--DAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcccccee---EEe--cccChHHHHHHHhcCCEEEE
Confidence 5899999999999999999999985 899999999999999976531 1100 000 01111234567889999999
Q ss_pred cCccccHHHHHHh
Q 012720 206 AMPVQFSSSFLEG 218 (458)
Q Consensus 206 aVp~~~v~~vl~~ 218 (458)
|.|.+....+++.
T Consensus 75 ~~p~~~~~~i~ka 87 (389)
T COG1748 75 AAPPFVDLTILKA 87 (389)
T ss_pred eCCchhhHHHHHH
Confidence 9998765555543
No 153
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=1.1e-05 Score=80.14 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~-r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.++|+||| .|.||.+||.+|.++| +.|++|+ |++ +++++++.+|+||
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g--~tVtv~~~rT~-----------------------------~l~e~~~~ADIVI 206 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAAN--ATVTIAHSRTR-----------------------------DLPAVCRRADILV 206 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCC--CEEEEECCCCC-----------------------------CHHHHHhcCCEEE
Confidence 68999999 9999999999999999 9999995 543 3456778999999
Q ss_pred EcCcccc-HHHHHHhhhhcCCCCCeEEEec
Q 012720 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 205 laVp~~~-v~~vl~~i~~~l~~~~ivV~~s 233 (458)
.|++... +.+. ++++|++||++.
T Consensus 207 savg~~~~v~~~------~lk~GavVIDvG 230 (296)
T PRK14188 207 AAVGRPEMVKGD------WIKPGATVIDVG 230 (296)
T ss_pred EecCChhhcchh------eecCCCEEEEcC
Confidence 9999643 3332 378899999985
No 154
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.02 E-value=1.7e-05 Score=70.08 Aligned_cols=95 Identities=24% Similarity=0.335 Sum_probs=64.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+...... -.+...++..+.+.++|+||.|
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~~--------~~~~~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGVN--------IEAIPLEDLEEALQEADIVINA 82 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGCS--------EEEEEGGGHCHHHHTESEEEE-
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCccc--------cceeeHHHHHHHHhhCCeEEEe
Confidence 5799999999999999999999982 359999999999998877531100 0122345666667899999999
Q ss_pred Ccccc---HHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQF---SSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~---v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|... .++.+...... -.+++++.
T Consensus 83 T~~~~~~i~~~~~~~~~~~---~~~v~Dla 109 (135)
T PF01488_consen 83 TPSGMPIITEEMLKKASKK---LRLVIDLA 109 (135)
T ss_dssp SSTTSTSSTHHHHTTTCHH---CSEEEES-
T ss_pred cCCCCcccCHHHHHHHHhh---hhceeccc
Confidence 99643 22222221111 14888886
No 155
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.00 E-value=3.3e-05 Score=69.93 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=66.1
Q ss_pred hhhccc-cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012720 114 TWRSKA-KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD 192 (458)
Q Consensus 114 ~~~~~~-~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~ 192 (458)
.+...+ .+++|...+++.|+|.|.+|..+|..|...| .+|+++++++-++-+....| .++. +
T Consensus 9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~alqA~~dG--------------f~v~-~ 71 (162)
T PF00670_consen 9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIRALQAAMDG--------------FEVM-T 71 (162)
T ss_dssp HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHHTT---------------EEE--
T ss_pred HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHHHHHhhhcC--------------cEec-C
Confidence 444433 4667777889999999999999999999998 99999999986544444344 2333 6
Q ss_pred HHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 193 AKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 193 ~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
.+++++.+|++|.++-...+- -.+....++++.+|.++. ..+.
T Consensus 72 ~~~a~~~adi~vtaTG~~~vi--~~e~~~~mkdgail~n~G-h~d~ 114 (162)
T PF00670_consen 72 LEEALRDADIFVTATGNKDVI--TGEHFRQMKDGAILANAG-HFDV 114 (162)
T ss_dssp HHHHTTT-SEEEE-SSSSSSB---HHHHHHS-TTEEEEESS-SSTT
T ss_pred HHHHHhhCCEEEECCCCcccc--CHHHHHHhcCCeEEeccC-cCce
Confidence 788999999999998865531 012334577888887765 3443
No 156
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.99 E-value=5.4e-05 Score=76.27 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=69.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+||+|||+|.+|..+|..|+..|...++.++|++++.++.....-.+...+. .. ..+..+.|.++ +++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~--~~-~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL--KN-PKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC--CC-CEEEECCCHHH-hCCCCEEEEC
Confidence 46999999999999999999988855689999998765543322111111111 11 24666678876 7999999996
Q ss_pred Ccc-----cc-----------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 207 MPV-----QF-----------SSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 207 Vp~-----~~-----------v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
.-. .. ++++.+.+.++ .++.+++..+|-.
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 642 11 33444556565 4566777788744
No 157
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.94 E-value=4.1e-05 Score=77.59 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
..+++|||+|.||...+..|.......+|.+|+|+.++++.+.+.-.. +...+.++++++++++++|+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~--------~g~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD--------YEVPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------hCCcEEEeCCHHHHhccCCEEEEe
Confidence 468999999999999766665432237899999999998877653110 011256678999999999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|+.. .++. ...+++|+.|..+.
T Consensus 200 T~s~~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 200 TPSRK--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecC
Confidence 99743 1111 24567888876654
No 158
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.94 E-value=2.6e-05 Score=76.61 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=69.4
Q ss_pred EEEECc-chHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 130 VVVLGG-GSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 130 I~IIGa-G~mG~~iA~~La~aG--~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|+|||+ |.||..+|..|+..| ...+|.++|+++++++.....-.+... .. ...++..++|+.+++++||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~--~~-~~~~i~~~~d~~~~~~~aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE--PL-ADIKVSITDDPYEAFKDADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhh--hc-cCcEEEECCchHHHhCCCCEEEEC
Confidence 689999 999999999999876 446899999988766554432111110 11 134577778877889999999996
Q ss_pred Ccc----------------ccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720 207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 207 Vp~----------------~~v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
.-. ....++++.+.++. ++.+++..+|-
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP 121 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNP 121 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 522 12455556666655 56677777763
No 159
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.91 E-value=4e-05 Score=76.78 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=65.0
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc
Q 012720 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (458)
Q Consensus 130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (458)
|+|||+|.||..+|..|+..|.. +|+++|++++..+...-.-... .........++.++|.+ ++++||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~--~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA--APILGSDTKVTGTNDYE-DIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh--hhhcCCCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence 68999999999999999988822 9999999876543221100000 00001123455666765 48999999998731
Q ss_pred ----------------ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 210 ----------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 210 ----------------~~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
....++++++.++.+ +.++|..+|-.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p-~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAP-NAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence 124556667777664 55666677644
No 160
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.91 E-value=7.1e-05 Score=75.22 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVila 206 (458)
+||+|||+|.+|.++|..|+..|..++|.++|+++++++.+...-.+..+. .+..... ..+.+ .++++|+||++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~----~~~~~~i~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF----LPSPVKIKAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc----cCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 489999999999999999999884458999999988766554321000000 0111222 24554 47899999999
Q ss_pred Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+... -+.++.+.+.++- ++.+++..+|-+
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~ 120 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV 120 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence 8752 1344445565544 466777777643
No 161
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.90 E-value=8.3e-05 Score=74.84 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=63.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
|||+|||+|.+|+.+|..|+..|.-.+|.++|+++++++.... .+... +.. +..+. +.+.+ .+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~----~~~i~-~~d~~-~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVK----PVRIY-AGDYA-DCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-ccC----CeEEe-eCCHH-HhCCCCEEEE
Confidence 6899999999999999999998843589999999876542111 11110 110 11222 45654 5899999999
Q ss_pred cCcccc----------------HHHHHHhhhhcCCCCCeEEEecc
Q 012720 206 AMPVQF----------------SSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 206 aVp~~~----------------v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
|++... ++++.+.+.++-+ +.+++..+|
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~-~giiiv~tN 117 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAP-DAILLVVTN 117 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecC
Confidence 998521 3445555666554 445555555
No 162
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.88 E-value=3e-05 Score=76.94 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=92.7
Q ss_pred cccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.+...+++-.++.|.|++. .+.|.++. .+.++|||.|.+|+-.|.++..-| ..|+.+|.-.. .+...
T Consensus 119 aR~i~~A~~s~k~g~wnr~--------~~~G~el~--GKTLgvlG~GrIGseVA~r~k~~g--m~vI~~dpi~~-~~~~~ 185 (406)
T KOG0068|consen 119 ARQIGQASASMKEGKWNRV--------KYLGWELR--GKTLGVLGLGRIGSEVAVRAKAMG--MHVIGYDPITP-MALAE 185 (406)
T ss_pred hhhcchhheeeecCceeec--------ceeeeEEe--ccEEEEeecccchHHHHHHHHhcC--ceEEeecCCCc-hHHHH
Confidence 3566667777888988872 34567777 679999999999999999998777 78888875431 22333
Q ss_pred hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720 170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t 240 (458)
..| ++.. +++|++..||+|-+-+|. .+++.++. +....+++|..||+++.|-..++
T Consensus 186 a~g--------------vq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 186 AFG--------------VQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDE 243 (406)
T ss_pred hcc--------------ceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceech
Confidence 333 2332 678999999999999995 66888884 35677899999999999876654
No 163
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.86 E-value=8.1e-05 Score=72.96 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
+|||+|+|+ |.||..++..+.+.. ++++. +++++.+..... . ..++..++|++++++++|+||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~-~~elvav~d~~~~~~~~~-~-------------~~~i~~~~dl~~ll~~~DvVi 65 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAE-DLELVAAVDRPGSPLVGQ-G-------------ALGVAITDDLEAVLADADVLI 65 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCcccccc-C-------------CCCccccCCHHHhccCCCEEE
Confidence 479999998 999999998887643 26766 477776543222 0 012345568888888899999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
.+++.....+.+....+ .|..+|.-+.|+..+.
T Consensus 66 d~t~p~~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 66 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred ECCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 88887776666655444 4555665565777553
No 164
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.85 E-value=0.00014 Score=75.97 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=68.0
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
+...++|+|+|+|.+|..+|..|...| .+|+++++++.+.......|. .+ .+.+++++.+|+|
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~G~--------------~v-~~l~eal~~aDVV 271 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMDGF--------------RV-MTMEEAAELGDIF 271 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhcCC--------------Ee-cCHHHHHhCCCEE
Confidence 334679999999999999999999888 899999999876544433331 22 2567788899999
Q ss_pred EEcCccccHHHHHH-hhhhcCCCCCeEEEec
Q 012720 204 LHAMPVQFSSSFLE-GISDYVDPGLPFISLS 233 (458)
Q Consensus 204 ilaVp~~~v~~vl~-~i~~~l~~~~ivV~~s 233 (458)
|.|+.. .+++. +....+++|.++++..
T Consensus 272 I~aTG~---~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 272 VTATGN---KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EECCCC---HHHHHHHHHhcCCCCCEEEEcC
Confidence 999854 33443 4567788899888775
No 165
>PRK15076 alpha-galactosidase; Provisional
Probab=97.85 E-value=6.2e-05 Score=79.09 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCeEEEECcchHHHHHHH--HHH-hcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 127 TNKVVVLGGGSFGTAMAA--HVA-NKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~--~La-~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
|+||+|||+|.||.+.+. .++ ..+. +.+|+++|+++++++.....-. ........+..+..++|..+++++||+
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~--~~~~~~~~~~~i~~ttD~~eal~dADf 78 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR--KLAESLGASAKITATTDRREALQGADY 78 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence 479999999999977666 554 1111 2699999999987664332200 000111122357778898888999999
Q ss_pred EEEcCcc
Q 012720 203 CLHAMPV 209 (458)
Q Consensus 203 VilaVp~ 209 (458)
||+++-.
T Consensus 79 Vv~ti~v 85 (431)
T PRK15076 79 VINAIQV 85 (431)
T ss_pred EeEeeee
Confidence 9998764
No 166
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.84 E-value=0.00027 Score=66.69 Aligned_cols=263 Identities=13% Similarity=0.107 Sum_probs=141.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HH-------hhcCCCccCCCCCCC---CceEEeCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----IN-------EKHCNCRYFPEQKLP---ENVIATTD 192 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~----l~-------~~g~~~~~~~~~~l~---~~i~a~~~ 192 (458)
.-||+|+|.|-+|+.+|..++..| ++|.+||..++++.. +. +.|.-- +..... .-|..+++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~G--yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lr---Gnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSG--YQVQLYDILEKQLQTALENVEKELRKLEEHGLLR---GNLSADEQLALISGTTS 77 (313)
T ss_pred ccceeEeecccccchHHHHHhccC--ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhc---cCccHHHHHHHHhCCcc
Confidence 468999999999999999999999 999999999876432 22 122100 001100 12445789
Q ss_pred HHhhcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720 193 AKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (458)
Q Consensus 193 ~~ea~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e 270 (458)
+.|+.++|=.|--|+|.. --+.++.++...+.+.+++-+.+..+.++ .+++-+... ..| .+.-|..+--
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS---~~s~gL~~k-----~q~-lvaHPvNPPy 148 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPS---KFSAGLINK-----EQC-LVAHPVNPPY 148 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChH---HHhhhhhhh-----hhe-eEecCCCCCc
Confidence 999999999999999963 46667778878787777776666556553 111211111 111 2222221110
Q ss_pred HhccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720 271 LMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (458)
Q Consensus 271 i~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~-~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~ 348 (458)
. - -...++.+. -.++.+++-++++.+.|-+.. ....+.| +.- ..+-.+.++
T Consensus 149 f-i-PLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~G----------------------f~l---nriq~Ailn 201 (313)
T KOG2305|consen 149 F-I-PLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILG----------------------FAL---NRIQYAILN 201 (313)
T ss_pred c-c-chheeccCCCCChhHHHHHHHHHHHhCCCCccccccccc----------------------cee---ccccHHHHH
Confidence 0 0 001112222 246788999999998885533 3222221 011 112245778
Q ss_pred HHHHHHHHcCCCccccccc--cCCcchhh---hhccCCCcc---chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHH
Q 012720 349 EIRWLATKMGAKPATITGL--SGTGDIML---TCFVNLSRN---RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIAL 420 (458)
Q Consensus 349 E~~~la~a~Gi~~~~~~~~--~g~gd~~~---t~~~~~srn---~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~l 420 (458)
|..+++..-+++..++..+ .|+|..+. .+.-.+-.. ..+-.++..| +..+++-+|...+. .|-..+.++
T Consensus 202 e~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLNA~Gv~dYf~Rys~~--I~aV~~t~GpiP~~-~d~~t~~kv 278 (313)
T KOG2305|consen 202 ETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLNAEGVADYFKRYSAG--ITAVLKTMGPIPDF-TDRKTANKV 278 (313)
T ss_pred HHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcCcHHHHHHHHHhhhh--HHHHHHHcCCCCCC-cchhHHHHH
Confidence 8888877665554333222 23432211 000000000 0111122221 11233333433332 244677888
Q ss_pred HHHcCCCCcHHHH
Q 012720 421 AQKYNVKMPVLTA 433 (458)
Q Consensus 421 A~~~gv~~P~~~~ 433 (458)
+++.+-.+|.-..
T Consensus 279 ~~ql~~~v~~d~l 291 (313)
T KOG2305|consen 279 AEQLEPKVSLDNL 291 (313)
T ss_pred HHHHhhccCchhH
Confidence 8888888887663
No 167
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.84 E-value=5.3e-05 Score=79.65 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..++|+|||.|.+|..+|.+|...| .+|+++++++.........| +.. .+++++++.+|+|++
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~~G--------------~~~-~~leell~~ADIVI~ 315 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAMEG--------------YQV-VTLEDVVETADIFVT 315 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHhcC--------------cee-ccHHHHHhcCCEEEE
Confidence 4679999999999999999999888 89999999876543332223 112 267788899999999
Q ss_pred cCccccHHHHH-HhhhhcCCCCCeEEEeccC
Q 012720 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 206 aVp~~~v~~vl-~~i~~~l~~~~ivV~~snG 235 (458)
++.. ..++ .+....++++.+|+++..+
T Consensus 316 atGt---~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 316 ATGN---KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCCc---ccccCHHHHhccCCCcEEEEcCCC
Confidence 9753 3344 3556778899999998765
No 168
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.83 E-value=0.00015 Score=68.37 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=62.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil 205 (458)
.|+|+|+|+|+||..+|..|.+.| ++|+++|++++.++.+.+.. . ....+ .++.. .++|+++-
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~~-g------------~~~v~-~~~l~~~~~Dv~vp 91 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAELF-G------------ATVVA-PEEIYSVDADVFAP 91 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHc-C------------CEEEc-chhhccccCCEEEe
Confidence 579999999999999999999999 99999999998887776531 0 12222 23333 37999997
Q ss_pred cCccc-cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 206 aVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|.... -..+.++++ + ..+|+.-.|+-.
T Consensus 92 ~A~~~~I~~~~~~~l----~-~~~v~~~AN~~~ 119 (200)
T cd01075 92 CALGGVINDDTIPQL----K-AKAIAGAANNQL 119 (200)
T ss_pred cccccccCHHHHHHc----C-CCEEEECCcCcc
Confidence 65543 234444443 3 457777777643
No 169
>PLN00203 glutamyl-tRNA reductase
Probab=97.81 E-value=9.7e-05 Score=79.19 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=68.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+.... ... .+...++..+++.++|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g------~~i--~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPD------VEI--IYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCC------Cce--EeecHhhHHHHHhcCCEEEEc
Confidence 4789999999999999999998882 3799999999998888764211 000 011234666778999999999
Q ss_pred Ccccc---HHHHHHhhhhcC---CCCCeEEEecc
Q 012720 207 MPVQF---SSSFLEGISDYV---DPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~---v~~vl~~i~~~l---~~~~ivV~~sn 234 (458)
+++.. ..+.++.+.+.- ....++|+++-
T Consensus 337 T~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 337 TSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred cCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 98632 555555553211 12347888873
No 170
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=9.5e-05 Score=71.05 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=67.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCC---HHhh-cCCCCE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTD---AKTA-LLGADY 202 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~---~~ea-~~~aDi 202 (458)
|+|.|||+|.+|..+|..|.+.| |+|++++++++.+++.......... +.. .++ ++++ +.++|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~~~~~~~---------v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLADELDTHV---------VIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhhhcceEE---------EEecCCCHHHHHhcCCCcCCE
Confidence 68999999999999999999999 9999999999988875442111000 000 112 2333 568999
Q ss_pred EEEcCccccHHHHHHhhhh-cCCCCCeEEEecc
Q 012720 203 CLHAMPVQFSSSFLEGISD-YVDPGLPFISLSK 234 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~-~l~~~~ivV~~sn 234 (458)
++.++..+.+..++-.+.. .+.-..+++-..+
T Consensus 70 vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 70 VVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred EEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999998877777766643 3444455555553
No 171
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.79 E-value=9.3e-05 Score=63.84 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=64.0
Q ss_pred eEEEECc-chHHHHHHHHHHhc-CCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 129 KVVVLGG-GSFGTAMAAHVANK-KSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 129 kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
||+|+|+ |.+|..++..|.+. + +++..+ +++++..+.+...+.... .... ... ...+.+ ..++|+||+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~--~~l~av~~~~~~~~~~~~~~~~~~~---~~~~-~~~-~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD--FEVVALAASARSAGKRVSEAGPHLK---GEVV-LEL-EPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC--ceEEEEEechhhcCcCHHHHCcccc---cccc-ccc-ccCChh--hcCCCEEEE
Confidence 6999995 99999999999985 4 677755 655433333333221100 0000 000 001222 248999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|+|.....+++..+.+.+.+|++||+++..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 72 ALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCcHHHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 99999888887766666788999999995443
No 172
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.77 E-value=0.00016 Score=75.11 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=68.8
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
...++|+|+|+|.+|..+|..+...| .+|+++++++.+.......|. .+ .+.+++++.+|+||
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~G~--------------~v-~~leeal~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMDGF--------------RV-MTMEEAAKIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhcCC--------------Ee-CCHHHHHhcCCEEE
Confidence 34679999999999999999999888 899999999876544443332 12 24567789999999
Q ss_pred EcCccccHHHHHH-hhhhcCCCCCeEEEeccC
Q 012720 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKG 235 (458)
Q Consensus 205 laVp~~~v~~vl~-~i~~~l~~~~ivV~~snG 235 (458)
.++.. ..++. .....++++.++++...+
T Consensus 256 taTG~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TATGN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECCCC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 98864 34443 356778899999888754
No 173
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.76 E-value=0.00029 Score=66.56 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=67.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|+|++||+|++|..+...+-+.-.++ -|.+|||+.+++..+.+.-. ....++++|.+.+.|+++-|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~-------------~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG-------------RRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC-------------CCccccHHHHhhccceeeee
Confidence 68999999999999998887531113 46789999998887765311 11225788888999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
-..+++++...+++. .|.-++-++-|--
T Consensus 68 AS~~Av~e~~~~~L~---~g~d~iV~SVGAL 95 (255)
T COG1712 68 ASPEAVREYVPKILK---AGIDVIVMSVGAL 95 (255)
T ss_pred CCHHHHHHHhHHHHh---cCCCEEEEechhc
Confidence 999999988877655 3433444444443
No 174
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.75 E-value=0.00012 Score=74.10 Aligned_cols=94 Identities=11% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..+++|||+|.+|...+..++. .+. .+|.+|+|++++++++.+.-.. . ++..+...++.+++++++|+|+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~-~~v~v~~r~~~~a~~~~~~~~~-~------~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDI-ERVRVYSRTFEKAYAFAQEIQS-K------FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCc-cEEEEECCCHHHHHHHHHHHHH-h------cCCcEEEeCCHHHHHhcCCEEEE
Confidence 4689999999999988877754 332 6899999999988877653110 0 01124556788889999999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|+|+.. .++. ..+++|+.|+.+.
T Consensus 199 aT~s~~--p~i~---~~l~~G~hV~~iG 221 (325)
T PRK08618 199 VTNAKT--PVFS---EKLKKGVHINAVG 221 (325)
T ss_pred ccCCCC--cchH---HhcCCCcEEEecC
Confidence 999763 2332 4567898887664
No 175
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.75 E-value=0.0003 Score=69.28 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=75.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHH-HH-HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPA-VC-QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~-v~~r~~~-~~-e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
||||+|+| +|.||..++..+.+.. ++++. +++|... .. +.+.+. .+. .+.++.+++|++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~~~~~~-------~~~-~~~gv~~~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGTDAGEL-------AGI-GKVGVPVTDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCCCHHHh-------cCc-CcCCceeeCCHHHhcCCCCE
Confidence 37999999 6999999999998652 26766 4675432 11 011110 000 01135667788886557899
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ 269 (458)
||.++++..+.+.+..... .|..+|..+.|+..+..+.+.+..++ ....++.+|++.-
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~------~g~~v~~a~NfSl 129 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEK------AGIAAVIAPNFSI 129 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhc------CCccEEEECcccH
Confidence 9999998877777665544 46666666668766543333333222 1235667776654
No 176
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.74 E-value=0.00033 Score=73.49 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANK-------KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~a-------G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (458)
..||+|||+ |.+|..+|..|+.. +.-.++.++|+++++++...-+-.+..+ .+...+.+..+..+.++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~----~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY----PLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh----hhcCceEEecCCHHHhC
Confidence 459999999 99999999999987 5223788899988766543322111100 11123554444445689
Q ss_pred CCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 199 GADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 199 ~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
++|+||++--.. -++++.+.|.++..++.++|.++|-+
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 999999976431 13444455555445677888788754
No 177
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.73 E-value=0.00023 Score=70.11 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
||||+|||+|+||..++..|.+.. +.++.. +++... .+...+.. ..++.+++|.+++..+.|+|+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~-~~~l~~v~~~~~~-~~~~~~~~-----------~~~~~~~~d~~~l~~~~DvVve 67 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDP-DLRVDWVIVPEHS-IDAVRRAL-----------GEAVRVVSSVDALPQRPDLVVE 67 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCC-CceEEEEEEcCCC-HHHHhhhh-----------ccCCeeeCCHHHhccCCCEEEE
Confidence 479999999999999999998753 255553 444322 12221110 0124566788776456899999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
|++...+.+....+.. .|..++..+.|
T Consensus 68 ~t~~~~~~e~~~~aL~---aGk~Vvi~s~~ 94 (265)
T PRK13303 68 CAGHAALKEHVVPILK---AGIDCAVISVG 94 (265)
T ss_pred CCCHHHHHHHHHHHHH---cCCCEEEeChH
Confidence 9998877666655543 46667766655
No 178
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.73 E-value=0.0002 Score=71.88 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=67.3
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||+|.+|...+..+.. .+. .+|.+|+|++++++++.++-.. . ...+. .++.++++.++|+|+.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~-~-------~~~~~-~~~~~~av~~aDiVit 194 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARA-L-------GPTAE-PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHh-c-------CCeeE-ECCHHHHhhcCCEEEE
Confidence 4689999999999999999975 342 5799999999988887764211 0 01122 4678888999999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|+|+.. .++. ..+++|+.|..+.
T Consensus 195 aT~s~~--Pl~~---~~~~~g~hi~~iG 217 (304)
T PRK07340 195 ATTSRT--PVYP---EAARAGRLVVAVG 217 (304)
T ss_pred ccCCCC--ceeC---ccCCCCCEEEecC
Confidence 999753 2222 2367898877664
No 179
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.71 E-value=0.00021 Score=71.60 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=66.8
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc
Q 012720 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (458)
Q Consensus 130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (458)
|+|||+|.+|+.+|..|+..|.-.+++++|+++++++.....-.+.... .. ...+...++.+ .+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~--~~-~~~i~~~~~~~-~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF--LA-TGTIVRGGDYA-DAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccc--cC-CCeEEECCCHH-HhCCCCEEEEcCCC
Confidence 6899999999999999998875468999999987766554421111100 01 12344445654 58999999998874
Q ss_pred cc----------------HHHHHHhhhhcCCCCCeEEEeccC
Q 012720 210 QF----------------SSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 210 ~~----------------v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
.. ++++.+.|.++- ++.+++..+|-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 21 444555566655 56677777763
No 180
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.70 E-value=0.00025 Score=69.92 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=66.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil 205 (458)
.+++.|+|+|.+|.+++..|++.| ++|++++|+.++++.+.+.-.. .+ .+... +.++ ...++|+||.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g--~~v~v~~R~~~~~~~la~~~~~---~~------~~~~~-~~~~~~~~~~DivIn 184 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKAD--CNVIIANRTVSKAEELAERFQR---YG------EIQAF-SMDELPLHRVDLIIN 184 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhh---cC------ceEEe-chhhhcccCccEEEE
Confidence 468999999999999999999998 8999999999887777653110 00 11222 2222 3457999999
Q ss_pred cCcccc---HHHHHHhhhhcCCCCCeEEEeccCCCcch
Q 012720 206 AMPVQF---SSSFLEGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 206 aVp~~~---v~~vl~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
|+|... ..++.- -...++++.+++++. ....+|
T Consensus 185 atp~gm~~~~~~~~~-~~~~l~~~~~v~D~~-y~p~~T 220 (270)
T TIGR00507 185 ATSAGMSGNIDEPPV-PAEKLKEGMVVYDMV-YNPGET 220 (270)
T ss_pred CCCCCCCCCCCCCCC-CHHHcCCCCEEEEec-cCCCCC
Confidence 999632 221100 123467788999986 344443
No 181
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.70 E-value=0.00011 Score=77.13 Aligned_cols=95 Identities=22% Similarity=0.313 Sum_probs=65.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||+|.||..++..|...| . +|++++|+.++++.+.+... . .+....+..+++.++|+||.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G--~~~V~v~~r~~~ra~~la~~~g------~-----~~~~~~~~~~~l~~aDvVI~ 248 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKG--VRKITVANRTLERAEELAEEFG------G-----EAIPLDELPEALAEADIVIS 248 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHHHcC------C-----cEeeHHHHHHHhccCCEEEE
Confidence 479999999999999999999888 5 89999999988777765421 0 11122355667789999999
Q ss_pred cCcccc---HHHHHHhhh-hcCCCCCeEEEecc
Q 012720 206 AMPVQF---SSSFLEGIS-DYVDPGLPFISLSK 234 (458)
Q Consensus 206 aVp~~~---v~~vl~~i~-~~l~~~~ivV~~sn 234 (458)
|+++.. ..+.++... ..-..+.++++++.
T Consensus 249 aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 249 STGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 998643 233333321 11123567888874
No 182
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00018 Score=72.73 Aligned_cols=96 Identities=19% Similarity=0.341 Sum_probs=72.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
...++|||+|.++..-...+..--.--+|.+|+|+++..+++.+.-.. .++..+.++++.++++++||+|+.|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~~~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGGEAVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcCccceeccCHHHHhhcCCEEEEe
Confidence 467999999999999988887643236899999999988877653211 1122467888999999999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|+.. .++. ..++++|+.|..+.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiG 225 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIG 225 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecC
Confidence 99866 2221 35677898887665
No 183
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.67 E-value=0.00032 Score=70.86 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=64.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVil 205 (458)
.+||+|||+|.+|..+|..|+..|.-.++.++|++++.++....+-.+... +...+... ++.+ .+++||+||+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----~~~~~~i~~~~~~-~~~~adivIi 79 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----FTSPTKIYAGDYS-DCKDADLVVI 79 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----ccCCeEEEeCCHH-HhCCCCEEEE
Confidence 479999999999999999999888323899999988765544332111110 10122333 4444 5899999999
Q ss_pred cCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccC
Q 012720 206 AMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 206 aVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
+--.. . ++++++.+.++- ++.+++..+|-
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 66431 1 334444455544 35667777763
No 184
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.67 E-value=8.7e-05 Score=73.36 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=57.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||. |.||.+||..|.++| +.|++|.... .++++.+++||+||.
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~g--atVtv~~s~t----------------------------~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKN--ATVTLTHSRT----------------------------RNLAEVARKADILVV 207 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEEE
Confidence 679999999 999999999999999 9999982111 156777899999999
Q ss_pred cCcccc-HHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~-v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++... +.. .++++|++||+++
T Consensus 208 avg~~~~v~~------~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFVTK------EFVKEGAVVIDVG 230 (284)
T ss_pred ecCccccCCH------HHccCCcEEEEec
Confidence 999643 443 2378899999985
No 185
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.67 E-value=0.00029 Score=71.12 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=70.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
..+++|||+|..+..-+..+...-.-.+|.+|+|++++++++.+.-.. ....+.+.++.+++++++|+|+.|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA--------LGFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------cCCcEEEECCHHHHhcCCCEEEEe
Confidence 578999999999999888887643236899999999998877653211 012356678999999999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++.. .+++ ...+++|+.|..+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecC
Confidence 99653 2221 24567898887664
No 186
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.65 E-value=0.00029 Score=70.62 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=69.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
..+++|||+|..|..-+..++.--.-.+|.+|+|++++++++.+.-.. .+...+.+.++++++++++|+|+.|
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~-------~~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK-------EFGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------hcCCcEEEeCCHHHHHhcCCEEEEe
Confidence 468999999999999888887642126899999999998887654211 0112366778999999999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++.. .++. ...+++|+.|..+.
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiG 212 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAG 212 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecC
Confidence 99753 2221 23567887766553
No 187
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.65 E-value=0.00023 Score=72.69 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
..+++|||+|..+..-...+..--.-.+|.+|+|++++++++.+.-.. ....+.+.++++++++++|+|+.|
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG--------PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 468999999999988776665432226899999999988877654211 012356678999999999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++..-..++.. +.+++|+.|..+.
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIG 225 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVG 225 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecC
Confidence 986442223322 4668898776554
No 188
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.65 E-value=0.0048 Score=63.18 Aligned_cols=234 Identities=14% Similarity=0.131 Sum_probs=137.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-Cc-cCCCC------CCCCceE---EeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CR-YFPEQ------KLPENVI---ATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~-~~-~~~~~------~l~~~i~---a~~~~~e 195 (458)
|.+|.|+|+|..+--+|..|.+.+ .+.|-+.+|...+.+++-+.-.. .. +.... .+...+. +..+.++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~ 79 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEE 79 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHH
Confidence 457999999999999999999877 36799999987665554332111 00 00000 0111121 3457788
Q ss_pred hcCCCCEEEEcCccccHHHHHHhhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE---EEECcccH---
Q 012720 196 ALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI---ALSGPSFA--- 268 (458)
Q Consensus 196 a~~~aDiVilaVp~~~v~~vl~~i~-~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~---vl~gP~~a--- 268 (458)
...+.|.+|+|||+++-.+|+++|. ..++.=..||.++.+++.. ..+...+.+. +.. ..+. --.|....
T Consensus 80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~--~lv~~~l~~~-~~~-~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSH--LLVKGFLNDL-GPD-AEVISFSTYYGDTRWSDG 155 (429)
T ss_pred hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchH--HHHHHHHHhc-CCC-ceEEEeecccccceeccC
Confidence 8889999999999999999999874 3444445677788777753 2334444433 321 1111 11121111
Q ss_pred ---HH-HhccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHH--------HHHHHHHHHHHHH--hcc
Q 012720 269 ---LE-LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAG--------ALKNVLAIAAGIV--VGM 332 (458)
Q Consensus 269 ---~e-i~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~k--------alkNi~ai~~G~~--~~~ 332 (458)
.. +..+....+.+++ .+.....++..+|+..|+.+...++...+|-.. ++.|-+++..-.. ..-
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 01 1111112234443 345678999999999999999988887777432 2233333221110 011
Q ss_pred ----cC---C--CcHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 012720 333 ----NL---G--NNSMAALVAQGCSEIRWLATKMGAKPATIT 365 (458)
Q Consensus 333 ----kl---~--~n~~~al~~~~l~E~~~la~a~Gi~~~~~~ 365 (458)
|+ | ......-+...-.|+..+-+++|+++=.++
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLL 277 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLL 277 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHH
Confidence 11 1 223445566777899999999998754433
No 189
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.63 E-value=0.00031 Score=73.62 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+... . ......+..+++.++|+||.|
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g------~-----~~i~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG------G-----EAVKFEDLEEYLAEADIVISS 247 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC------C-----eEeeHHHHHHHHhhCCEEEEC
Confidence 4689999999999999999998873 689999999988776665310 0 011123566778899999999
Q ss_pred Ccccc---HHHHHHhhhhcCCCCCeEEEecc
Q 012720 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~---v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+++.. ..+.++.....-+...+++++..
T Consensus 248 T~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred CCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 98643 22333332211112347888873
No 190
>PLN02494 adenosylhomocysteinase
Probab=97.62 E-value=0.00027 Score=74.27 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=68.4
Q ss_pred hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
.+...++|+|+|+|.+|..+|.++...| .+|+++++++.+.......|. ... +.+++++.+|+
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~G~--------------~vv-~leEal~~ADV 312 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALMEGY--------------QVL-TLEDVVSEADI 312 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhcCC--------------eec-cHHHHHhhCCE
Confidence 3334579999999999999999998777 899999999865444333332 111 56778889999
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
||.++....+- ..+....++++.+++++..
T Consensus 313 VI~tTGt~~vI--~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 313 FVTTTGNKDII--MVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEECCCCccch--HHHHHhcCCCCCEEEEcCC
Confidence 99977654321 1445667889999998875
No 191
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.62 E-value=0.00028 Score=71.04 Aligned_cols=107 Identities=14% Similarity=0.308 Sum_probs=64.3
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc-CCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~-~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
|||+|||+ |.+|..++..|+..|...+|+++||++ ..+.+......... +........+..+++.++ ++++|+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCCCCEEEE
Confidence 69999998 999999999999988333699999954 22222211110000 000001113455556554 899999999
Q ss_pred cCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 206 aVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|+... .++++.+.|.+.. ++.++|..+|.++
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 98631 1344445555555 4556666776554
No 192
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.61 E-value=0.00028 Score=71.58 Aligned_cols=94 Identities=20% Similarity=0.353 Sum_probs=66.7
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..+++|||+|.+|...+..|.. .+. .+|++|+|+.++++++.+.-.. . +...+...+++++++.++|+|+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i-~~v~V~~R~~~~a~~~a~~~~~-~------~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDI-RSARIWARDSAKAEALALQLSS-L------LGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCc-cEEEEECCCHHHHHHHHHHHHh-h------cCceEEEeCCHHHHhccCCEEEE
Confidence 4689999999999999999974 442 5799999999998887654210 0 01124556788888999999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~ 232 (458)
|+|+.. .++. ...+++++.|..+
T Consensus 201 aT~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 201 TTPSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred ecCCCC--cEec--HHHcCCCcEEEee
Confidence 999743 1221 2346678776543
No 193
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.60 E-value=0.00016 Score=72.96 Aligned_cols=97 Identities=20% Similarity=0.324 Sum_probs=61.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
..+++|||+|..|..-+..+...-.-.+|.+|+|++++++++.+.-.. +...+...+|+++++++||+|+.|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~--------~~~~v~~~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD--------LGVPVVAVDSAEEAVRGADIIVTA 199 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC--------CCTCEEEESSHHHHHTTSSEEEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc--------ccccceeccchhhhcccCCEEEEc
Confidence 358999999999999888887643236899999999988888764321 112467788999999999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++.....++. ...+++|+.|..+.
T Consensus 200 T~s~~~~P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 200 TPSTTPAPVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp ---SSEEESB---GGGS-TT-EEEE-S
T ss_pred cCCCCCCcccc--HHHcCCCcEEEEec
Confidence 99754211221 35678898887665
No 194
>PLN02602 lactate dehydrogenase
Probab=97.59 E-value=0.00044 Score=70.73 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=66.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
+||+|||+|.+|+.+|..|+..+...++.++|+++++++....+-.+...+.. ...+....+.++ +++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~---~~~i~~~~dy~~-~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLP---RTKILASTDYAV-TAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCC---CCEEEeCCCHHH-hCCCCEEEECC
Confidence 69999999999999999999887545799999988655433221111110100 123444456666 79999999985
Q ss_pred ccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 208 PVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 208 p~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
-.. -+.++.+.|.++ .++.+++..+|-.
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 321 123344455554 3566777788744
No 195
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.57 E-value=0.00046 Score=71.94 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=68.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..++|+|+|+|.+|..++..+...| .+|+++++++.+.+.....|. ... +.+++++++|+||.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G~--------------~~~-~~~e~v~~aDVVI~ 263 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEGY--------------EVM-TMEEAVKEGDIFVT 263 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcCC--------------EEc-cHHHHHcCCCEEEE
Confidence 3579999999999999999999888 899999999887766665542 111 34567889999999
Q ss_pred cCccccHHHHHH-hhhhcCCCCCeEEEecc
Q 012720 206 AMPVQFSSSFLE-GISDYVDPGLPFISLSK 234 (458)
Q Consensus 206 aVp~~~v~~vl~-~i~~~l~~~~ivV~~sn 234 (458)
|+.... ++. .....++++.+++++..
T Consensus 264 atG~~~---~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TTGNKD---IITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCCHH---HHHHHHHhcCCCCcEEEEeCC
Confidence 986543 343 34677888998888764
No 196
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.57 E-value=0.00038 Score=72.08 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=68.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+|+.|||+|-||...|..|+++|. .+|++.+|+.++++.+.+.-. . .+...+++.+.+.++|+||.|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~-~----------~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG-A----------EAVALEELLEALAEADVVISS 245 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC-C----------eeecHHHHHHhhhhCCEEEEe
Confidence 4689999999999999999999985 789999999999998877521 1 122334666778999999999
Q ss_pred Ccccc---HHHHHHhhhhcCCCCCeEEEecc
Q 012720 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~---v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+.+.. ..+.++..... ++..++|++.+
T Consensus 246 Tsa~~~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 246 TSAPHPIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cCCCccccCHHHHHHHHhc-ccCeEEEEecC
Confidence 87542 23333333221 12246788774
No 197
>PRK05442 malate dehydrogenase; Provisional
Probab=97.57 E-value=0.00024 Score=71.95 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=67.0
Q ss_pred hcCCCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (458)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~-----~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (458)
|..++||+|||+ |.+|+.+|..|...+.-- ++.++|+++. +++...-. ..+.. ..+..++..+.+..+
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D---l~~~~-~~~~~~~~i~~~~y~ 76 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME---LDDCA-FPLLAGVVITDDPNV 76 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh---hhhhh-hhhcCCcEEecChHH
Confidence 456789999998 999999999998766312 7999998542 22211110 00000 001112344445446
Q ss_pred hcCCCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 196 ALLGADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 196 a~~~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
.+++||+||++--.. -++++.++|.++.+++.+++..+|-++
T Consensus 77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 689999999865421 144455566666656778888887443
No 198
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.57 E-value=0.00018 Score=62.10 Aligned_cols=97 Identities=18% Similarity=0.279 Sum_probs=62.1
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCCEEEE
Q 012720 129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (458)
Q Consensus 129 kI~IIG-aG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (458)
||+||| .|.+|..+...|.++- ..++. ++++++..-..+..... ...+ ...+.+.+ +.++ +.++|+||+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp-~~e~~~~~~~~~~~g~~~~~~~~---~~~~---~~~~~~~~~~~~~-~~~~Dvvf~ 72 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP-DFELVALVSSSRSAGKPLSEVFP---HPKG---FEDLSVEDADPEE-LSDVDVVFL 72 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS-TEEEEEEEESTTTTTSBHHHTTG---GGTT---TEEEBEEETSGHH-HTTESEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCC-CccEEEeeeeccccCCeeehhcc---cccc---ccceeEeecchhH-hhcCCEEEe
Confidence 799999 8999999999999864 35655 45666522222222110 0000 01222322 4444 589999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
|+|.....++...+. ++|..||+++.-.
T Consensus 73 a~~~~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 73 ALPHGASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp -SCHHHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred cCchhHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 999988888777763 4688999998543
No 199
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.56 E-value=0.00019 Score=67.68 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD 161 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~ 161 (458)
..||+|+|+|.||+.+|..|+++| . +++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G--vg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG--IGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC--CCEEEEECCC
Confidence 468999999999999999999999 5 69999998
No 200
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.55 E-value=0.0013 Score=67.12 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=63.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH-hhcCCCCEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~-ea~~~aDiVi 204 (458)
|+||+|||+ |.+|..++..|.++. ++++..+.++.+..+.+.+.... +.+. ....+ .+.+ ....++|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p-~~elv~v~~~~~~g~~l~~~~~~---~~~~---~~~~~-~~~~~~~~~~vD~Vf 73 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP-EVEIVAVTSRSSAGKPLSDVHPH---LRGL---VDLVL-EPLDPEILAGADVVF 73 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC-CceEEEEECccccCcchHHhCcc---cccc---cCcee-ecCCHHHhcCCCEEE
Confidence 579999997 999999999999763 26776554433322233321100 0000 00111 1222 1356899999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
+|+|.....++...+.+ .|..||+++..+-.
T Consensus 74 ~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 74 LALPHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred ECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 99999888887776644 58899999965543
No 201
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.54 E-value=0.00034 Score=73.76 Aligned_cols=94 Identities=12% Similarity=0.158 Sum_probs=62.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil 205 (458)
|||.|+|+|.+|..+|..|.+.| ++|++++++++.++.+++ .+.... .++. .-...++++ +.++|.||+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~~~~~~~-~gd~------~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDRLDVRTV-VGNG------SSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhhcCEEEE-EeCC------CCHHHHHHcCCCcCCEEEE
Confidence 68999999999999999999988 999999999998888765 222111 1110 001123344 678999999
Q ss_pred cCccccHHHHHHhhhhcC-CCCCeEE
Q 012720 206 AMPVQFSSSFLEGISDYV-DPGLPFI 230 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l-~~~~ivV 230 (458)
+++.......+......+ +...+|+
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 999866554443333333 4334444
No 202
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.54 E-value=0.00093 Score=65.27 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=66.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiV 203 (458)
.+||+|||+|+||..++..|...+. ++++. +++|+.++.+.+... +.+.+|+++. ...+|+|
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~---------------~~~~~~l~~ll~~~~DlV 66 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR---------------VALLDGLPGLLAWRPDLV 66 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc---------------CcccCCHHHHhhcCCCEE
Confidence 4799999999999999999976431 24444 567777666666432 2355688885 5789999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
+-|-....+++....++. .|.-++.+|-|--
T Consensus 67 VE~A~~~av~e~~~~iL~---~g~dlvv~SvGAL 97 (267)
T PRK13301 67 VEAAGQQAIAEHAEGCLT---AGLDMIICSAGAL 97 (267)
T ss_pred EECCCHHHHHHHHHHHHh---cCCCEEEEChhHh
Confidence 999999999888877655 3555555554543
No 203
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.53 E-value=0.00023 Score=71.69 Aligned_cols=88 Identities=14% Similarity=0.195 Sum_probs=56.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
+++||+|||+|+||...+..+.++. +.++. +|+|++.. .+.+ .. ++..+.+.++.+.++|+|+
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~p-d~ELVgV~dr~~~~--~~~~-~~------------~v~~~~d~~e~l~~iDVVi 65 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQP-DMELVGVFSRRGAE--TLDT-ET------------PVYAVADDEKHLDDVDVLI 65 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCC-CcEEEEEEcCCcHH--HHhh-cC------------CccccCCHHHhccCCCEEE
Confidence 3579999999999999999998763 27776 57888521 2221 11 1223346666678899999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~ 232 (458)
+|+|+....+.... .+..|..+|+.
T Consensus 66 IctPs~th~~~~~~---~L~aG~NVV~s 90 (324)
T TIGR01921 66 LCMGSATDIPEQAP---YFAQFANTVDS 90 (324)
T ss_pred EcCCCccCHHHHHH---HHHcCCCEEEC
Confidence 99997554333322 23345555554
No 204
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.52 E-value=0.00039 Score=70.61 Aligned_cols=94 Identities=20% Similarity=0.317 Sum_probs=65.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|+|||+|.+|.+.+..|.....-.+|.+|+|++++++++.+.... . +...+...+++++++.++|+|+.|
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-~------~g~~v~~~~d~~~al~~aDiVi~a 204 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-E------LGIPVTVARDVHEAVAGADIIVTT 204 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-c------cCceEEEeCCHHHHHccCCEEEEe
Confidence 468999999999999888887532126899999999998888764211 0 011245567888989999999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEE
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFIS 231 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~ 231 (458)
+|+.. .++.. ..+++++.|..
T Consensus 205 T~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 205 TPSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred eCCCC--cEecH--HHcCCCceEEe
Confidence 99743 12211 23456665543
No 205
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.52 E-value=0.00029 Score=72.71 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=66.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
..+|.|||+|.+|...+..+...| .+|+++||++++++.+........+. ...-..++.+.++++|+||.|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~~v~~-------~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGGRIHT-------RYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCceeEe-------ccCCHHHHHHHHccCCEEEEc
Confidence 357999999999999999999988 89999999998877776532110000 000012345667899999999
Q ss_pred Ccc--ccHHHHH-HhhhhcCCCCCeEEEec
Q 012720 207 MPV--QFSSSFL-EGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~--~~v~~vl-~~i~~~l~~~~ivV~~s 233 (458)
++. .....++ ++....++++.+||+++
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 843 1111111 33445578889998876
No 206
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.50 E-value=0.00061 Score=68.57 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=64.0
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCCEE
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV 203 (458)
|||+|||+ |.+|+.+|..|+..+...++.++|++ .++ |.-.. +.....+..++.+ +|+.+.++++|+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~-----g~alD-L~~~~~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP-----GVAAD-LSHINTPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc-----eeehH-hHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence 69999999 99999999999988744589999987 211 11000 0000012235542 2334568999999
Q ss_pred EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|++.-.. -+.++.+.|.++ .++.+++..+|-.+
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvD 121 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVN 121 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Confidence 9976431 133444455555 46778888898554
No 207
>PRK06046 alanine dehydrogenase; Validated
Probab=97.50 E-value=0.00037 Score=70.69 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
..+|+|||+|.+|...+..|.....-..|.+|+|++++.+++.+.-.. .++..+...++.+++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSS-------VVGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHh-------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence 468999999999999999887543125788999999988877654210 01123456678888886 9999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|+.. .++. ...+++|+.|..+.
T Consensus 201 Tps~~--P~~~--~~~l~~g~hV~~iG 223 (326)
T PRK06046 201 TPSRK--PVVK--AEWIKEGTHINAIG 223 (326)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecC
Confidence 99743 2221 23567888876554
No 208
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.49 E-value=0.0003 Score=64.47 Aligned_cols=73 Identities=26% Similarity=0.319 Sum_probs=56.7
Q ss_pred CCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~m-G~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+||.|||+|.| |..+|..|.+.| .+|++.+|+.+ ++.+.+.++|+||.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r~~~----------------------------~l~~~l~~aDiVIs 93 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHSKTK----------------------------NLKEHTKQADIVIV 93 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEECCch----------------------------hHHHHHhhCCEEEE
Confidence 579999999997 888999999998 78999998742 34456789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
|+++..+ +. ...++++.++|++..
T Consensus 94 at~~~~i---i~--~~~~~~~~viIDla~ 117 (168)
T cd01080 94 AVGKPGL---VK--GDMVKPGAVVIDVGI 117 (168)
T ss_pred cCCCCce---ec--HHHccCCeEEEEccC
Confidence 9997542 21 123566788888874
No 209
>PRK04148 hypothetical protein; Provisional
Probab=97.44 E-value=0.00068 Score=59.62 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=71.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+||.+||+| .|..+|..|++.| ++|+..|.+++.++.+++.+.+.. ..+. +..++ +.-+++|+|.-+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~~~~v-~dDl-------f~p~~-~~y~~a~liysi 84 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLGLNAF-VDDL-------FNPNL-EIYKNAKLIYSI 84 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhCCeEE-ECcC-------CCCCH-HHHhcCCEEEEe
Confidence 4789999999 9999999999999 999999999998888877654311 0110 11122 446799999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
=|...+..-+.+++..+..+-+|..+++
T Consensus 85 rpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 85 RPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 9987777777777777776666666663
No 210
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.43 E-value=0.0022 Score=60.65 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|.|||+|.+|...+..|.++| ++|++++++. +.+..+...+. ..+. .-.-.. +.+.++|+||.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~-i~~~---------~~~~~~-~~l~~adlVia 76 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGK-IRWK---------QKEFEP-SDIVDAFLVIA 76 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCC-EEEE---------ecCCCh-hhcCCceEEEE
Confidence 579999999999999999999999 9999998764 22334433221 0000 000012 23678999999
Q ss_pred cCccccHHHHHHhh
Q 012720 206 AMPVQFSSSFLEGI 219 (458)
Q Consensus 206 aVp~~~v~~vl~~i 219 (458)
|+.+..+...+...
T Consensus 77 aT~d~elN~~i~~~ 90 (202)
T PRK06718 77 ATNDPRVNEQVKED 90 (202)
T ss_pred cCCCHHHHHHHHHH
Confidence 99987766655443
No 211
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.42 E-value=0.00056 Score=63.89 Aligned_cols=96 Identities=27% Similarity=0.331 Sum_probs=63.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--CC---HHhhcCCC
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--TD---AKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~~---~~ea~~~a 200 (458)
.+++.|+|+ |.+|..++..|++.| ++|++++|+.++++.+.+.- ...+ + ..+... .+ ..+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~~R~~~~~~~l~~~l-~~~~--~----~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG--ARVVLVGRDLERAQKAADSL-RARF--G----EGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHH-Hhhc--C----CcEEEeeCCCHHHHHHHHhcC
Confidence 478999996 999999999999998 89999999998877765431 0000 0 011111 12 23567899
Q ss_pred CEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|+||.+++.... .........+++.+++++.
T Consensus 99 diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 99 DVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence 999999996542 1111222334467788875
No 212
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.42 E-value=0.0012 Score=65.80 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=63.0
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTAL--- 197 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~--e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~--- 197 (458)
||+++||+|||+|.+|..+...+.+.. +.++. +++++++.. +..++.|.. ...++.++.+
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~-~velvAVvdid~es~gla~A~~~Gi~-------------~~~~~ie~LL~~~ 66 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSE-HLEPGAMVGIDPESDGLARARRLGVA-------------TSAEGIDGLLAMP 66 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCC-CcEEEEEEeCChhhHHHHHHHHcCCC-------------cccCCHHHHHhCc
Confidence 456789999999999999888887643 26665 678887532 222333321 1124566655
Q ss_pred --CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 198 --LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 198 --~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
.+.|+||++++.....+....+.+ .|..+|+.+
T Consensus 67 ~~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~s 101 (302)
T PRK08300 67 EFDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLT 101 (302)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECC
Confidence 468999999998877776655543 577888776
No 213
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.41 E-value=0.00073 Score=68.32 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=63.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCH---HhhcCC
Q 012720 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDA---KTALLG 199 (458)
Q Consensus 126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea~~~ 199 (458)
+|.||+|||+ |.+|+.+|..|+..+...++.++|++....+ .+... . ....+...++. .+++++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~--~--------~~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHI--D--------TPAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhc--C--------cCceEEEecCCCchHHHhCC
Confidence 4679999999 9999999999996664468999999422111 11110 0 01124433332 467899
Q ss_pred CCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 200 ADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 200 aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
+|+||++.-.. .+.++++.+.++ .++.+|+..+|+++.
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 99999876531 122233334343 456678888887664
No 214
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.40 E-value=0.0013 Score=75.44 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=60.4
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCe-------------EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLK-------------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA- 189 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~-------------V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a- 189 (458)
..+++||+|||+|.||...+..|++.. +.+ |++.|++.+.++++.+...+.. .+..
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~-~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~---------~v~lD 635 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVK-TISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE---------AVQLD 635 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCc-CccccccccccccccEEEEECCCHHHHHHHHHhcCCCc---------eEEee
Confidence 334679999999999999999999764 233 8899999988887766321100 1223
Q ss_pred eCCHHhh---cCCCCEEEEcCccccHHHHHHhh
Q 012720 190 TTDAKTA---LLGADYCLHAMPVQFSSSFLEGI 219 (458)
Q Consensus 190 ~~~~~ea---~~~aDiVilaVp~~~v~~vl~~i 219 (458)
..|.+++ ++++|+||.|+|......++...
T Consensus 636 v~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 636 VSDSESLLKYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred cCCHHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence 3455443 46899999999987666655443
No 215
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.40 E-value=0.0012 Score=66.50 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=62.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCCEEEEcC
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHAM 207 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVilaV 207 (458)
||+|||+|.+|+.+|..|+..+.--++.++|.++++++.....-.+...+ ....+++. ..+.+ .+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~---~~~~~~~i~~~~y~-~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATAL---TYSTNTKIRAGDYD-DCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhcc---CCCCCEEEEECCHH-HhCCCCEEEECC
Confidence 79999999999999999998874347999999876544322211010000 00112232 34554 589999999976
Q ss_pred cc----ccH--------------HHHHHhhhhcCCCCCeEEEeccCC
Q 012720 208 PV----QFS--------------SSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 208 p~----~~v--------------~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
-. ... +++.+.+.++- ++.+++..+|-+
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv 122 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL 122 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence 43 112 22233344444 566777788754
No 216
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.37 E-value=0.00056 Score=71.57 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+||.|||+|.||..++..|+..|. .++++++|+.++++.+.+..... .+...++..+.+.++|+||.|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~~----------~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRNA----------SAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcCC----------eEecHHHHHHHhccCCEEEEC
Confidence 4689999999999999999999883 47999999999888887642100 122234556778899999999
Q ss_pred Cccc
Q 012720 207 MPVQ 210 (458)
Q Consensus 207 Vp~~ 210 (458)
+++.
T Consensus 250 T~a~ 253 (414)
T PRK13940 250 VNVL 253 (414)
T ss_pred cCCC
Confidence 9974
No 217
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.36 E-value=0.0021 Score=65.80 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=63.0
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEEE
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL 204 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi 204 (458)
|||+|||+ |.+|..+.+.|.++- .+++. ++++++..-+.+.+.... +.+. ...... .+.++...++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP-~~el~~l~~s~~sagk~~~~~~~~---l~~~---~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP-EVEITYLVSSRESAGKPVSEVHPH---LRGL---VDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC-CceEEEEeccchhcCCChHHhCcc---cccc---CCceeecCCHHHhhcCCCEEE
Confidence 58999998 999999999999763 26777 546544222222221100 0010 011111 14455556899999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+|+|.....+++..+.+ .|..||+++.-+
T Consensus 74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~f 102 (346)
T TIGR01850 74 LALPHGVSAELAPELLA---AGVKVIDLSADF 102 (346)
T ss_pred ECCCchHHHHHHHHHHh---CCCEEEeCChhh
Confidence 99999888777776644 578999998544
No 218
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.35 E-value=0.0007 Score=67.37 Aligned_cols=98 Identities=26% Similarity=0.412 Sum_probs=64.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. .+ +. ..+....+..+.+.++|+||-|
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~-~~-~~----~~~~~~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNA-RF-PA----ARATAGSDLAAALAAADGLVHA 199 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh-hC-CC----eEEEeccchHhhhCCCCEEEEC
Confidence 4689999999999999999999983 3799999999988888653110 00 00 0122223445557889999999
Q ss_pred Ccccc--HHHHHHhh-hhcCCCCCeEEEec
Q 012720 207 MPVQF--SSSFLEGI-SDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~--v~~vl~~i-~~~l~~~~ivV~~s 233 (458)
+|..- .... .+ ...++++.+++++.
T Consensus 200 Tp~Gm~~~~~~--~~~~~~l~~~~~v~Div 227 (284)
T PRK12549 200 TPTGMAKHPGL--PLPAELLRPGLWVADIV 227 (284)
T ss_pred CcCCCCCCCCC--CCCHHHcCCCcEEEEee
Confidence 98531 1100 01 12355666777765
No 219
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.35 E-value=0.0021 Score=65.63 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=65.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhh-cCCCccC--CCCC--C-CCceEEeCCHHhhcCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEK-HCNCRYF--PEQK--L-PENVIATTDAKTALLG 199 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~-g~~~~~~--~~~~--l-~~~i~a~~~~~ea~~~ 199 (458)
|+||+|+|+|.||..++..+.+.. +.+|.. .+++++..+.+.+. |.. .|. +... + ..++.+..+.++...+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~-d~eLvav~d~~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP-DMELVGVAKTKPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC-CcEEEEEECCChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCChhHhhcc
Confidence 479999999999999999888653 377764 56665544444332 221 110 0000 1 1245666677777788
Q ss_pred CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|+||.|++.....+....... .|..+|+.+
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~---aGk~VI~~~ 109 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEK---AGVKAIFQG 109 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHH---CCCEEEEcC
Confidence 9999999998877666654433 466666544
No 220
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.33 E-value=0.00088 Score=67.83 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=64.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~-----~V~v~~r~~~~--~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (458)
.+||+|||+ |.+|..+|..|+..|.-- ++.++|+.+.. ++...- ...+... .+..++.+..+..+.++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~---Dl~~~~~-~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAM---ELEDCAF-PLLAEIVITDDPNVAFK 77 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeeh---hhhhccc-cccCceEEecCcHHHhC
Confidence 469999999 999999999999877322 79999985432 221111 0000000 01112344444445689
Q ss_pred CCCEEEEcCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 199 GADYCLHAMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 199 ~aDiVilaVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+||+||++--.. . ++++...|.++-+++.++|.++|-+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 999999976431 1 3444555666664567777778744
No 221
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.30 E-value=0.00096 Score=66.81 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=63.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCCEEEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCLH 205 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVil 205 (458)
+||+|||+|.+|+++|..|...+...++.++|+.++..+-... ...+-.. ......++.. +.+ .++++|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~---DL~~~~~-~~~~~~~i~~~~~y~-~~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL---DLSHAAA-PLGSDVKITGDGDYE-DLKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc---chhhcch-hccCceEEecCCChh-hhcCCCEEEE
Confidence 6899999999999999999887765699999998543321111 1000000 0111233333 344 4899999999
Q ss_pred cC--cc---c-----------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 206 AM--PV---Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 206 aV--p~---~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
+- |- . -++++.+++.++.+ +.+++..+|-++
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD 122 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVD 122 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHH
Confidence 87 31 1 13344445555544 667777887553
No 222
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.30 E-value=0.00098 Score=67.33 Aligned_cols=97 Identities=22% Similarity=0.248 Sum_probs=67.0
Q ss_pred CCCeEEEECcchHH-HHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CC
Q 012720 126 RTNKVVVLGGGSFG-TAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (458)
Q Consensus 126 ~~~kI~IIGaG~mG-~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD 201 (458)
+++||+|||+|.++ ...+..+.+.+.. .-|.++++++++++++.+.... + ..++|.++++++ .|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~iD 69 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI---------A---KAYTDLEELLADPDID 69 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCC
Confidence 46899999998555 5688888776511 2356789999998888765311 0 356788888764 69
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
+|++|+|.....++... .+..|..|+ |-|-+..
T Consensus 70 ~V~Iatp~~~H~e~~~~---AL~aGkhVl-~EKPla~ 102 (342)
T COG0673 70 AVYIATPNALHAELALA---ALEAGKHVL-CEKPLAL 102 (342)
T ss_pred EEEEcCCChhhHHHHHH---HHhcCCEEE-EcCCCCC
Confidence 99999998877776633 233465554 6666654
No 223
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.26 E-value=0.0025 Score=57.73 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=52.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|.|||+|.+|..-+..|.+.| ++|++++.+ ..+.+.+.+ ... .. .+.. ..++ +.++|+||.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~--~~~~l~~l~-~i~------~~--~~~~-~~~d-l~~a~lViaa 77 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE--ICKEMKELP-YIT------WK--QKTF-SNDD-IKDAHLIYAA 77 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc--cCHHHHhcc-CcE------EE--eccc-Chhc-CCCceEEEEC
Confidence 579999999999999999999999 999999643 344444321 000 00 0011 2223 6789999999
Q ss_pred CccccHHHHHHhh
Q 012720 207 MPVQFSSSFLEGI 219 (458)
Q Consensus 207 Vp~~~v~~vl~~i 219 (458)
+....+...+...
T Consensus 78 T~d~e~N~~i~~~ 90 (157)
T PRK06719 78 TNQHAVNMMVKQA 90 (157)
T ss_pred CCCHHHHHHHHHH
Confidence 9887766555443
No 224
>PRK11579 putative oxidoreductase; Provisional
Probab=97.26 E-value=0.0021 Score=65.62 Aligned_cols=95 Identities=14% Similarity=0.214 Sum_probs=62.2
Q ss_pred hcCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012720 124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G 199 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~ 199 (458)
|+.++||+|||+|.||.. .+..+.+.. +.++. +++++++++. +.. + .+.+++|.+++++ +
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------~------~~~~~~~~~ell~~~~ 64 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTP-GLELAAVSSSDATKVK---ADW------P------TVTVVSEPQHLFNDPN 64 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCC-CCEEEEEECCCHHHHH---hhC------C------CCceeCCHHHHhcCCC
Confidence 344579999999999984 455555542 26766 6788876542 110 0 1345678988875 5
Q ss_pred CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
.|+|++|+|.....+++..... .|..|+ +-|-+..
T Consensus 65 vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~ 99 (346)
T PRK11579 65 IDLIVIPTPNDTHFPLAKAALE---AGKHVV-VDKPFTV 99 (346)
T ss_pred CCEEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence 7999999998777666655433 465554 5665543
No 225
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.25 E-value=0.0011 Score=68.70 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=68.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..+++|||+|.++..-...++.-.. -.+|.+|+|++++++++.+.-.. . +++. ..+.++++.++++++||+|+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~-~-~~~~---~~v~~~~s~~eav~~ADIVvt 229 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE-T-YPQI---TNVEVVDSIEEVVRGSDIVTY 229 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH-h-cCCC---ceEEEeCCHHHHHcCCCEEEE
Confidence 4689999999999999988876320 16899999999988877653211 0 1110 126677899999999999999
Q ss_pred cCcccc----HHHHHHhhhhcCCCCCeEEE
Q 012720 206 AMPVQF----SSSFLEGISDYVDPGLPFIS 231 (458)
Q Consensus 206 aVp~~~----v~~vl~~i~~~l~~~~ivV~ 231 (458)
|+++.. ...++. ...+++|+.|+.
T Consensus 230 aT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 230 CNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred ccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 997532 122221 245678887764
No 226
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0034 Score=63.27 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVi 204 (458)
|+||+|+|+ |.-|.-+-+.|+.+. ..++.++..++..-+.+.+...+.....+ ++ ... -+.++. ..+||+||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp-~ve~~~~ss~~~~g~~~~~~~p~l~g~~~--l~--~~~-~~~~~~~~~~~DvvF 75 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHP-DVELILISSRERAGKPVSDVHPNLRGLVD--LP--FQT-IDPEKIELDECDVVF 75 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCC-CeEEEEeechhhcCCchHHhCcccccccc--cc--ccc-CChhhhhcccCCEEE
Confidence 689999996 999999999999875 35666665544322233333322221111 11 111 133332 45699999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC----EEEEEC-cccHHHHhccCCeEE
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP----FIALSG-PSFALELMNKLPTAM 279 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~----~~vl~g-P~~a~ei~~g~~t~v 279 (458)
+|+|...-.+++..+.. ++..||+++.-.-.... +..++..|..... -..++| |..-.+-..+..-..
T Consensus 76 lalPhg~s~~~v~~l~~---~g~~VIDLSadfR~~d~----~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIA 148 (349)
T COG0002 76 LALPHGVSAELVPELLE---AGCKVIDLSADFRLKDP----EVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIA 148 (349)
T ss_pred EecCchhHHHHHHHHHh---CCCeEEECCcccccCCH----HHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEee
Confidence 99999887777666543 46679999943322111 1222222321000 012222 333323222332223
Q ss_pred EEccCCHHHHHHHHHHHhc
Q 012720 280 VVASKDRKLANAVQQLLAS 298 (458)
Q Consensus 280 ~i~g~d~e~~e~l~~lL~~ 298 (458)
..||......-.+.++++.
T Consensus 149 nPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 149 NPGCYPTAAILALAPLVKA 167 (349)
T ss_pred CCCchHHHHHHHHHHHHHc
Confidence 3556666777788888876
No 227
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.21 E-value=0.0026 Score=64.45 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=64.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTA 196 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~-----~V~v~~r~~--~~~e~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (458)
..||+|||+ |.+|+.+|..|...+.-. ++.++|+.+ ++++.... .+....+. .+.....+..+.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~------~~~~i~~~~~~~ 76 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL------AGVVATTDPEEA 76 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc------CCcEEecChHHH
Confidence 469999998 999999999999877322 799999854 22221111 11110011 122333344456
Q ss_pred cCCCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 197 LLGADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 197 ~~~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+++||+||++--.. -++++..+|.++.+++.+++..+|-+
T Consensus 77 ~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 77 FKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 89999999976431 14455566777665577787788744
No 228
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.17 E-value=0.0013 Score=68.11 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=52.1
Q ss_pred EEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEE-eCC---HHhhcCCCCE
Q 012720 130 VVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIA-TTD---AKTALLGADY 202 (458)
Q Consensus 130 I~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~--g~~~~~~~~~~l~~~i~a-~~~---~~ea~~~aDi 202 (458)
|.|+|+|.+|..++..|++.+ ++ +|++.+|+.++++++.+. +..... +.+ ..| ++++++++|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~l~~~~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVEA---------VQVDVNDPESLAELLRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEEE---------EE--TTTHHHHHHHHTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhccccceeE---------EEEecCCHHHHHHHHhcCCE
Confidence 789999999999999999986 24 899999999998888753 111110 111 112 4567889999
Q ss_pred EEEcCccccHHHHH
Q 012720 203 CLHAMPVQFSSSFL 216 (458)
Q Consensus 203 VilaVp~~~v~~vl 216 (458)
||-|++......++
T Consensus 71 Vin~~gp~~~~~v~ 84 (386)
T PF03435_consen 71 VINCAGPFFGEPVA 84 (386)
T ss_dssp EEE-SSGGGHHHHH
T ss_pred EEECCccchhHHHH
Confidence 99999876444444
No 229
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.17 E-value=0.0019 Score=65.06 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=64.1
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--C-CHHhhcCCCCEEE
Q 012720 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--T-DAKTALLGADYCL 204 (458)
Q Consensus 129 kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~-~~~ea~~~aDiVi 204 (458)
||+|||+ |.+|+.+|..|+..+...++.++|+++.. |.... +.....+..+..+ + ++.++++++|+||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-------g~a~D-L~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-------GVAAD-LSHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-------EEEch-hhcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 7999999 99999999999988744589999987621 11100 1111112235542 2 2356789999999
Q ss_pred EcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 205 laVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
++.-.. -++++.+.|.++ .++.+++..+|-.+
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvD 120 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVN 120 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchh
Confidence 976531 133444455555 46788888898654
No 230
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.16 E-value=0.0013 Score=62.12 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 5689999999999999999999994 4899999873
No 231
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.15 E-value=0.0019 Score=54.77 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=60.3
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEEcCc
Q 012720 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLHAMP 208 (458)
Q Consensus 130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVilaVp 208 (458)
|.|+|.|.+|..++..|.+.+ .+|++++++++.++.+.+.+....+ ++..-+ ..+++ -++++|.++++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~-gd~~~~------~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIY-GDATDP------EVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEE-S-TTSH------HHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhccccccc-ccchhh------hHHhhcCccccCEEEEccC
Confidence 679999999999999999965 7999999999999999887743211 110000 01122 2568999999998
Q ss_pred cccHH-HHHHhhhhcCCCCCeEEEe
Q 012720 209 VQFSS-SFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 209 ~~~v~-~vl~~i~~~l~~~~ivV~~ 232 (458)
.+..- .++..++...+...+++-+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 75433 3333444444433444433
No 232
>PRK05086 malate dehydrogenase; Provisional
Probab=97.09 E-value=0.003 Score=63.66 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=61.9
Q ss_pred CeEEEECc-chHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCCEE
Q 012720 128 NKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYC 203 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiV 203 (458)
|||+|||+ |.+|.+++..|.. .+..++++++++++. .+ +.... +........+.. .+++.++++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~-----g~alD-l~~~~~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TP-----GVAVD-LSHIPTAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Cc-----ceehh-hhcCCCCceEEEeCCCCHHHHcCCCCEE
Confidence 79999999 9999999998865 233378999998753 11 10000 000000012332 34655678999999
Q ss_pred EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|+|.-.. .+.++++.+.++ .++.+|+..+|-.+
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 9988631 133344445444 45678888887543
No 233
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.09 E-value=0.0017 Score=59.30 Aligned_cols=69 Identities=26% Similarity=0.428 Sum_probs=49.9
Q ss_pred EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (458)
Q Consensus 130 I~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (458)
|.|+|+ |.+|..++..|.+.| ++|+++.|++++.+. ..+.+ +..+. +.-.++..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--~~~~~--~~~~d-----~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--SPGVE--IIQGD-----LFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--CTTEE--EEESC-----TTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--ccccc--cceee-----ehhhhhhhhhhhhcchhhhhhh
Confidence 789997 999999999999999 999999999987666 22221 11000 0000234567889999999998
Q ss_pred c
Q 012720 209 V 209 (458)
Q Consensus 209 ~ 209 (458)
.
T Consensus 70 ~ 70 (183)
T PF13460_consen 70 P 70 (183)
T ss_dssp S
T ss_pred h
Confidence 4
No 234
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.09 E-value=0.0028 Score=67.74 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=67.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCc-eEEeC-C--------HH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIATT-D--------AK 194 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~---l~~~-i~a~~-~--------~~ 194 (458)
.|+.|+|+|.+|...+..+...| .+|++++++.++.+.++..|.....++... -..+ .+..+ + ..
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 58999999999999999998888 789999999988887776554321111000 0000 01111 1 23
Q ss_pred hhcCCCCEEEEcC-----ccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 195 TALLGADYCLHAM-----PVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 195 ea~~~aDiVilaV-----p~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+.++++|+||.|+ |..-+ +.++..+.+++|.+||+++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~L--it~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKL--ITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCee--ehHHHHhhCCCCCEEEEee
Confidence 4467899999999 43211 2344566788899999886
No 235
>PLN00106 malate dehydrogenase
Probab=97.05 E-value=0.0028 Score=64.12 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=63.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCCC
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~a 200 (458)
..||+|||+ |.+|..+|..|+..+...++.++|+++...+ .+..- . .+..+.. .+|..++++++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~--~--------~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHI--N--------TPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhC--C--------cCceEEEEeCCCCHHHHcCCC
Confidence 369999999 9999999999997774358999998762111 11110 0 0112332 23446779999
Q ss_pred CEEEEcCcc-----cc-----------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 201 DYCLHAMPV-----QF-----------SSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 201 DiVilaVp~-----~~-----------v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|+||++--. .. +.++++.+.++- ++.+++..+|-.+
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD 139 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN 139 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence 999997642 11 233334444443 5778888888665
No 236
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.04 E-value=0.0028 Score=62.80 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=64.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+++.|+|+|.+|.+++..|+..|. .+|++++|+.++++.+.+..... . .+....+..+.+.++|+||-|
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~---~------~~~~~~~~~~~~~~~DivIna 192 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL---G------KAELDLELQEELADFDLIINA 192 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc---c------ceeecccchhccccCCEEEEC
Confidence 4689999999999999999998873 58999999999888876642110 0 011211333556889999999
Q ss_pred CccccHHH--HHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSSS--FLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~~--vl~~i~~~l~~~~ivV~~s 233 (458)
+|..-..+ ...-....++++..|+++.
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 99642210 0000123456677888875
No 237
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.03 E-value=0.002 Score=59.31 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=49.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||+|||+ |..|+.+..-..++| |+|+.+.|++.++... .+.... ...+.--+...+.+.+.|+||.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG--HeVTAivRn~~K~~~~--~~~~i~-------q~Difd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG--HEVTAIVRNASKLAAR--QGVTIL-------QKDIFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC--CeeEEEEeChHhcccc--ccceee-------cccccChhhhHhhhcCCceEEEe
Confidence 79999996 999999999999999 9999999999876443 222110 01111011223457788888887
Q ss_pred Ccc
Q 012720 207 MPV 209 (458)
Q Consensus 207 Vp~ 209 (458)
.-.
T Consensus 70 ~~~ 72 (211)
T COG2910 70 FGA 72 (211)
T ss_pred ccC
Confidence 753
No 238
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.03 E-value=0.0017 Score=66.20 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=60.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
+|||+|+|+ |..|..+.+.|++++++ .++..+.+.+..-+.+.- .+. .+...+...+.++++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~--------~g~----~i~v~d~~~~~~~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF--------KGK----ELKVEDLTTFDFSGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee--------CCc----eeEEeeCCHHHHcCCCEEE
Confidence 479999996 99999999999998721 245667665432222211 110 1222211112357899999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+|+|.....++...+.. .|.+||+++.
T Consensus 69 ~A~g~g~s~~~~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAA---AGAVVIDNSS 95 (334)
T ss_pred ECCChHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999887777766543 5778998884
No 239
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.032 Score=55.61 Aligned_cols=230 Identities=16% Similarity=0.180 Sum_probs=135.8
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC--CCccCCCC-----CCCCceE---EeCCH
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQ-----KLPENVI---ATTDA 193 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~--~~~~~~~~-----~l~~~i~---a~~~~ 193 (458)
|..|.++.++|+|...--+|.-|..+| +..+-+++|...+-+++.+.-. ...++.+. .+..++. ...++
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~ 79 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDL 79 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhH
Confidence 345778999999999999999999988 4788888877654444433210 01122111 0111221 23578
Q ss_pred HhhcCCCCEEEEcCccccHHHHHHhh-hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE----------
Q 012720 194 KTALLGADYCLHAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL---------- 262 (458)
Q Consensus 194 ~ea~~~aDiVilaVp~~~v~~vl~~i-~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl---------- 262 (458)
+++..+.+-+|+|||+++-.+++++| -+.++.=..+|.++..++..- .+.... ..+|. ++.|+
T Consensus 80 a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~m-nk~~~---daeViS~SsY~~dTk 153 (431)
T COG4408 80 AQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLM-NKAGR---DAEVISLSSYYADTK 153 (431)
T ss_pred HHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHH-hhhCC---CceEEEeehhcccce
Confidence 88888999999999999999999987 344554445566665665431 122222 22342 12222
Q ss_pred ----ECcccHHHHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHH--------HHHHHHHHHH
Q 012720 263 ----SGPSFALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGAL--------KNVLAIAAGI 328 (458)
Q Consensus 263 ----~gP~~a~ei~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kal--------kNi~ai~~G~ 328 (458)
.-|.++-..+-.+ .+-+|+ .+...++.+..+|...|+.+...+....+|-.... .|=+++.. +
T Consensus 154 ~id~~~p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~a-i 230 (431)
T COG4408 154 YIDAEQPNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQA-I 230 (431)
T ss_pred eecccCcchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHH-H
Confidence 1244443322211 234554 45667889999999999999998887766643211 12122111 1
Q ss_pred Hhcc-------cC---C--CcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720 329 VVGM-------NL---G--NNSMAALVAQGCSEIRWLATKMGAKPAT 363 (458)
Q Consensus 329 ~~~~-------kl---~--~n~~~al~~~~l~E~~~la~a~Gi~~~~ 363 (458)
.... |+ | ......-++..-.|+.++..++|+++-.
T Consensus 231 f~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iN 277 (431)
T COG4408 231 FYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEIN 277 (431)
T ss_pred hCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchh
Confidence 1111 11 1 2233445667778999999999987443
No 240
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.01 E-value=0.0019 Score=66.84 Aligned_cols=97 Identities=21% Similarity=0.369 Sum_probs=62.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
+|||+|+|+ |..|..+.+.|.++. .++|+.+.+++..-+.+...+.. +.+...+ .+.. .+.++ ++++|+||+
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~---l~~~~~~-~~~~-~~~~~-~~~~DvVf~ 110 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPH---LITQDLP-NLVA-VKDAD-FSDVDAVFC 110 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCcc---ccCcccc-ceec-CCHHH-hcCCCEEEE
Confidence 679999997 999999999999883 37999988765432222221111 1111110 0111 12223 578999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
|+|.....+++..+ ..+..||+++.
T Consensus 111 Alp~~~s~~i~~~~----~~g~~VIDlSs 135 (381)
T PLN02968 111 CLPHGTTQEIIKAL----PKDLKIVDLSA 135 (381)
T ss_pred cCCHHHHHHHHHHH----hCCCEEEEcCc
Confidence 99987666666553 35788999984
No 241
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.00 E-value=0.0064 Score=60.43 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=59.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~--e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (458)
+||+|||+|.||..++..+.+.. +.++. +++++++.. +..++.|.. ...++.++.+. +.|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~-~~elvaV~d~d~es~~la~A~~~Gi~-------------~~~~~~e~ll~~~dIDa 67 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSE-HLEMVAMVGIDPESDGLARARELGVK-------------TSAEGVDGLLANPDIDI 67 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCC-CcEEEEEEeCCcccHHHHHHHHCCCC-------------EEECCHHHHhcCCCCCE
Confidence 68999999999998887777543 26665 578877542 222222311 23346666654 6899
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|++|+|.....+......+ .|..|++.+
T Consensus 68 V~iaTp~~~H~e~a~~al~---aGk~VIdek 95 (285)
T TIGR03215 68 VFDATSAKAHARHARLLAE---LGKIVIDLT 95 (285)
T ss_pred EEECCCcHHHHHHHHHHHH---cCCEEEECC
Confidence 9999998877776655443 477777655
No 242
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.99 E-value=0.0023 Score=64.84 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720 129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (458)
Q Consensus 129 kI~IIGa-G~mG~~iA~~La~aG~~-----~~V~v~~r~~--~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (458)
||+|||+ |.+|+.+|..|+..+.- .++.++|+++ +.++.... ...+... .+.....+..+..+++++|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~---Dl~d~~~-~~~~~~~i~~~~~~~~~~a 77 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM---ELQDCAF-PLLKGVVITTDPEEAFKDV 77 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee---ehhhhcc-cccCCcEEecChHHHhCCC
Confidence 8999999 99999999999976631 2599999986 43221111 0000000 0111233434555678999
Q ss_pred CEEEEcCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 201 DYCLHAMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 201 DiVilaVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|+||++--.. . ++++...|.++..++.+++..+|-++
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 130 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 9999865421 1 44455566666546667777776443
No 243
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.99 E-value=0.003 Score=64.03 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=64.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~-----~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
.||+|+|+ |.+|+.++..|...+. +.+|.++|+++.. +.+........+.. ..+..++....+..++++++|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g~~~Dl~d~~-~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEGVVMELQDCA-FPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccccceeeehhhcc-ccccCCceecCCHHHHhCCCC
Confidence 58999999 9999999999987552 1489999996531 11111111100000 001123444567667789999
Q ss_pred EEEEcCccc----c------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 202 YCLHAMPVQ----F------------SSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 202 iVilaVp~~----~------------v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+||++--.. . +.++...|.++..++.++|..+|-+
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA 131 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH
Confidence 999875421 1 2444456666665677777788744
No 244
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.98 E-value=0.0045 Score=65.24 Aligned_cols=124 Identities=13% Similarity=0.115 Sum_probs=73.3
Q ss_pred CcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012720 94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173 (458)
Q Consensus 94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~ 173 (458)
.++|+....|..+.+-++.+.+. ... -.+++|.|+|+|.+|..++..|.+.| ++|++++++++.++.+.+.+.
T Consensus 203 ~~gD~l~v~g~~~~l~~~~~~~~----~~~-~~~~~iiIiG~G~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~~~ 275 (453)
T PRK09496 203 EAGDEVYFIGAREHIRAVMSEFG----RLE-KPVKRVMIVGGGNIGYYLAKLLEKEG--YSVKLIERDPERAEELAEELP 275 (453)
T ss_pred cCCCEEEEEeCHHHHHHHHHHhC----ccC-CCCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHCC
Confidence 34455555555555432222222 111 13678999999999999999999988 999999999998888877542
Q ss_pred CCccC-CCCCCCCceEEeCCHHh-hcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEE
Q 012720 174 NCRYF-PEQKLPENVIATTDAKT-ALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (458)
Q Consensus 174 ~~~~~-~~~~l~~~i~a~~~~~e-a~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV 230 (458)
..... ++..- ...+++ .+.++|.||++++.....-++..+...+....+++
T Consensus 276 ~~~~i~gd~~~------~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 276 NTLVLHGDGTD------QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCeEEECCCCC------HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 21111 11000 001111 25689999999987543333333334444444444
No 245
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.0023 Score=63.47 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=57.5
Q ss_pred CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||.|. +|..+|..|.+.| ..|+++.+... ++.+.+++||+||.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~g--atVtv~~s~t~----------------------------~l~~~~~~ADIVIs 207 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKN--ASVTILHSRSK----------------------------DMASYLKDADVIVS 207 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCch----------------------------hHHHHHhhCCEEEE
Confidence 57999999988 9999999999988 89999886431 45566889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++...+ +. ..++++|++||++.
T Consensus 208 Avg~p~~---i~--~~~vk~gavVIDvG 230 (286)
T PRK14175 208 AVGKPGL---VT--KDVVKEGAVIIDVG 230 (286)
T ss_pred CCCCCcc---cC--HHHcCCCcEEEEcC
Confidence 9996542 11 13567899999876
No 246
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.97 E-value=0.0039 Score=50.41 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=29.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR 160 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r 160 (458)
.++++|+|+|.+|..++..|.+.+ ..+|.+|+|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 578999999999999999999984 278999988
No 247
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.95 E-value=0.0049 Score=63.78 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=65.4
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCC-CC----eEEEE--eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKS-QL----KVYML--MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~-~~----~V~v~--~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (458)
.||+|||+ |.+|..+|..|+..+. +. .+.++ |+++++++...-+-.+..+ .+..++.++.+..+.+++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~----~~~~~v~i~~~~y~~~kd 120 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY----PLLREVSIGIDPYEVFED 120 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh----hhcCceEEecCCHHHhCC
Confidence 59999999 9999999999998773 21 34445 7777665533321111000 011235544444456899
Q ss_pred CCEEEEcCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 200 ADYCLHAMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 200 aDiVilaVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
+|+||++--.. . ++++...|.++.+++.++|..+|-++
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD 174 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN 174 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence 99999965421 1 34444556666657778888887543
No 248
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.93 E-value=0.0052 Score=62.65 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|||+|.+|+.+|..|+++|. -.++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 4789999999999999999999993 2899999885
No 249
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.92 E-value=0.0028 Score=62.94 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=54.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV 203 (458)
.+++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. . ..+... ++..+.+.++|+|
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~-~--------~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQ-V--------GVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhh-c--------CcceeccchhhhhhcccCCCEE
Confidence 4689999999999999999999983 4799999999998888764210 0 001111 1233445789999
Q ss_pred EEcCccc
Q 012720 204 LHAMPVQ 210 (458)
Q Consensus 204 ilaVp~~ 210 (458)
|-|+|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999963
No 250
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.90 E-value=0.0023 Score=58.93 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999993 3699999885
No 251
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.88 E-value=0.0033 Score=59.86 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+..||+|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 35789999999999999999999994 4699999883
No 252
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.87 E-value=0.003 Score=67.38 Aligned_cols=71 Identities=15% Similarity=0.310 Sum_probs=53.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++++|+|+|.+|.+++..|++.| ++|++++|+.++++.+.+.. +.. .....+..+ +.++|+||.|
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G--~~V~i~~R~~~~~~~la~~~-~~~----------~~~~~~~~~-l~~~DiVIna 397 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAG--AELLIFNRTKAHAEALASRC-QGK----------AFPLESLPE-LHRIDIIINC 397 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh-ccc----------eechhHhcc-cCCCCEEEEc
Confidence 578999999999999999999999 89999999998887776531 100 000112222 4689999999
Q ss_pred Ccccc
Q 012720 207 MPVQF 211 (458)
Q Consensus 207 Vp~~~ 211 (458)
+|...
T Consensus 398 tP~g~ 402 (477)
T PRK09310 398 LPPSV 402 (477)
T ss_pred CCCCC
Confidence 99643
No 253
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.86 E-value=0.0035 Score=63.79 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=58.0
Q ss_pred hcCCCeEEEECc-chHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCC
Q 012720 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGA 200 (458)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~a 200 (458)
|++|+||+|+|+ |..|.-+.+.|.+.+++ .++..+ ++.+.+ |.... +.+. .+.+. .+..+ ++++
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~a------G~~l~-~~~~----~l~~~~~~~~~-~~~v 67 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESA------GHSVP-FAGK----NLRVREVDSFD-FSQV 67 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccC------CCeec-cCCc----ceEEeeCChHH-hcCC
Confidence 556789999997 99999999999976621 233333 332221 21111 1111 12221 12233 4789
Q ss_pred CEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
|++|+|+|......++..+.+ .|..||+++.
T Consensus 68 D~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~ 98 (336)
T PRK05671 68 QLAFFAAGAAVSRSFAEKARA---AGCSVIDLSG 98 (336)
T ss_pred CEEEEcCCHHHHHHHHHHHHH---CCCeEEECch
Confidence 999999997655555555433 4788999984
No 254
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.83 E-value=0.0045 Score=67.40 Aligned_cols=96 Identities=13% Similarity=0.233 Sum_probs=63.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEEc
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVila 206 (458)
-+|.|+|+|.+|..+|+.|.++| ++|+++|.++++++.+++.+....+ ++..-+ +.++++ ++++|.++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~g~~~i~-GD~~~~------~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRERGIRAVL-GNAANE------EIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHCCCeEEE-cCCCCH------HHHHhcCccccCEEEEE
Confidence 57999999999999999999999 9999999999999999876533211 111000 011221 4689999999
Q ss_pred CccccHH-HHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQFSS-SFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~~v~-~vl~~i~~~l~~~~ivV~~s 233 (458)
++++... .+...++... ++..++.-.
T Consensus 489 ~~~~~~~~~iv~~~~~~~-~~~~iiar~ 515 (558)
T PRK10669 489 IPNGYEAGEIVASAREKR-PDIEIIARA 515 (558)
T ss_pred cCChHHHHHHHHHHHHHC-CCCeEEEEE
Confidence 9875432 3444444443 344454433
No 255
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.81 E-value=0.02 Score=54.24 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+||.|||+|.+|..-+..|.+.| .+|++++.+.. .++.+.+.+ +.....+ .-...+ +.++|+||.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~~-~i~~~~~---------~~~~~d-l~~~~lVi~ 75 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQG-GITWLAR---------CFDADI-LEGAFLVIA 75 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHcC-CEEEEeC---------CCCHHH-hCCcEEEEE
Confidence 469999999999999999999999 99999987642 344554443 1111000 012233 678999999
Q ss_pred cCccccH
Q 012720 206 AMPVQFS 212 (458)
Q Consensus 206 aVp~~~v 212 (458)
|+....+
T Consensus 76 at~d~~l 82 (205)
T TIGR01470 76 ATDDEEL 82 (205)
T ss_pred CCCCHHH
Confidence 9887543
No 256
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.79 E-value=0.0042 Score=68.26 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil 205 (458)
.++|.|+|.|.+|..+++.|.+.| ++++++|.++++++.+++.|... +.++..-+ +.+++ -+++||.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDat~~------~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK--MRITVLERDISAVNLMRKYGYKV-YYGDATQL------ELLRAAGAEKAEAIVI 470 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhCCCeE-EEeeCCCH------HHHHhcCCccCCEEEE
Confidence 468999999999999999999998 99999999999999998766432 22211100 01122 2568999999
Q ss_pred cCccccH-HHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFS-SSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v-~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++++.. ..++..++... |+..|+.-.
T Consensus 471 ~~~d~~~n~~i~~~~r~~~-p~~~IiaRa 498 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQHF-PHLHILARA 498 (601)
T ss_pred EeCCHHHHHHHHHHHHHHC-CCCeEEEEe
Confidence 9997543 34444455544 344444333
No 257
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.79 E-value=0.0061 Score=61.11 Aligned_cols=100 Identities=11% Similarity=0.106 Sum_probs=61.6
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-
Q 012720 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ- 210 (458)
Q Consensus 132 IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~- 210 (458)
|||+|.+|..+|..|+..+.--++.++|++++.++.....-.+... .+..++.+..+..+.+++||+||++.-..
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS----FLPTPKKIRSGDYSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc----ccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence 6999999999999999887434799999987654433221111000 01112333333335689999999976531
Q ss_pred ---------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 211 ---------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 211 ---------------~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
-++++.+.+.++ .++.+++..+|-.
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 116 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPV 116 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 134444556554 4567777778643
No 258
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.73 E-value=0.0088 Score=64.07 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--CCCc--eE-EeCCH--------
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--LPEN--VI-ATTDA-------- 193 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~--l~~~--i~-a~~~~-------- 193 (458)
..||.|+|+|.+|...+..+...| .+|+++|+++++.+..++.|.......... .... ++ .+.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 469999999999999888888888 789999999999888887664311111000 0000 00 11111
Q ss_pred HhhcCCCCEEEEcCcccc--HHHH-HHhhhhcCCCCCeEEEec
Q 012720 194 KTALLGADYCLHAMPVQF--SSSF-LEGISDYVDPGLPFISLS 233 (458)
Q Consensus 194 ~ea~~~aDiVilaVp~~~--v~~v-l~~i~~~l~~~~ivV~~s 233 (458)
.+.++++|+||.|+.... ...+ .++....+++|.+|+++.
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999997532 1223 366667788899888875
No 259
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.69 E-value=0.017 Score=58.97 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..||+|||+ .||...+..+.+...+.++. +++++.++++++.++. ++...+|.++++.+.|++++
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-------------gi~~y~~~eell~d~Di~~V 68 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-------------GVPLYCEVEELPDDIDIACV 68 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-------------CCCccCCHHHHhcCCCEEEE
Confidence 468999999 68999998887753125655 6899999888887642 12245689998888888888
Q ss_pred cCcc----ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720 206 AMPV----QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248 (458)
Q Consensus 206 aVp~----~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l 248 (458)
++|+ ....++.... ++.|..|+ +-|-+..++.+.+.+..
T Consensus 69 ~ipt~~P~~~H~e~a~~a---L~aGkHVL-~EKPla~~Ea~el~~~A 111 (343)
T TIGR01761 69 VVRSAIVGGQGSALARAL---LARGIHVL-QEHPLHPRDIQDLLRLA 111 (343)
T ss_pred EeCCCCCCccHHHHHHHH---HhCCCeEE-EcCCCCHHHHHHHHHHH
Confidence 8764 3455554443 33465544 56666543333333333
No 260
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.67 E-value=0.002 Score=58.94 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCC----------ceE-EeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPE----------NVI-ATTDAK 194 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~-~~~l~~----------~i~-a~~~~~ 194 (458)
..||+|+|+|+.|..-+..|..-| ++|++++...+..+++...+....... ...... ... -.....
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 469999999999999999999988 999999999988777766543211110 000000 000 011344
Q ss_pred hhcCCCCEEEEcCccc--cHHHHH-HhhhhcCCCCCeEEEec
Q 012720 195 TALLGADYCLHAMPVQ--FSSSFL-EGISDYVDPGLPFISLS 233 (458)
Q Consensus 195 ea~~~aDiVilaVp~~--~v~~vl-~~i~~~l~~~~ivV~~s 233 (458)
+.++.+|+||.+.-.+ ....++ ++....++++.+|++++
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 5677899999866532 222222 33345567899999986
No 261
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.64 E-value=0.0048 Score=64.91 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=59.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc--------CCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANK--------KSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~a--------G~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (458)
+++||+|+|+|.||..++..|.++ |.+.+| .+++|+.++.+. .. + ....+++|.++.
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-----~~--------~-~~~~~~~d~~~l 67 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-----VD--------L-PGILLTTDPEEL 67 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-----CC--------C-cccceeCCHHHH
Confidence 357999999999999999888654 212444 367888654321 10 0 123456788887
Q ss_pred cC--CCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 197 LL--GADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 197 ~~--~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
+. +.|+|+.|++.. ...+. +...++.|..||+..+..
T Consensus 68 l~d~~iDvVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~ 107 (426)
T PRK06349 68 VNDPDIDIVVELMGGIEPAREL---ILKALEAGKHVVTANKAL 107 (426)
T ss_pred hhCCCCCEEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHH
Confidence 75 579999998753 22333 334455688888665544
No 262
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.63 E-value=0.0088 Score=57.51 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=59.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCC----HHHH-------HHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRD----PAVC-------QSINEKHCNCRYFPEQKLPENVIATTDA 193 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~----~~~~-------e~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (458)
.+||.|+|+|.+|..+|..|.+.|. . +|+++||+ .++. +.+.+.. + . .... .++
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~-----~----~~~~--~~l 91 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-N-----P----EKTG--GTL 91 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-c-----c----Cccc--CCH
Confidence 4689999999999999999999883 3 69999998 3332 2222210 0 0 0011 256
Q ss_pred HhhcCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccC
Q 012720 194 KTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 194 ~ea~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
.++++++|++|-+++... .++.++. +.++.+|..++|-
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~~~~l~~----m~~~~ivf~lsnP 130 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVKKEMIKK----MAKDPIVFALANP 130 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCCHHHHHh----hCCCCEEEEeCCC
Confidence 567788999999997322 2333333 3456677777753
No 263
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.61 E-value=0.0068 Score=61.69 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.++|.|+|+ |.||+.+++.|+.+ | ..++++++|++++++.+..+... ..+ .+.++++.++|+|+
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~g-v~~lilv~R~~~rl~~La~el~~------------~~i-~~l~~~l~~aDiVv 220 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTG-VAELLLVARQQERLQELQAELGG------------GKI-LSLEEALPEADIVV 220 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCC-CCEEEEEcCCHHHHHHHHHHhcc------------ccH-HhHHHHHccCCEEE
Confidence 478999998 89999999999854 4 25899999998887777653210 011 25667888999999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
.++...... ++. ...++++.+++++.
T Consensus 221 ~~ts~~~~~-~I~--~~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EID--PETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence 988753210 010 12335678888876
No 264
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.60 E-value=0.0051 Score=60.98 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=57.3
Q ss_pred CCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~m-G~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||.|.+ |.++|..|.+.| ..|+++.... .++.+.++.||+||.
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~--atVt~~hs~t----------------------------~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAG--ATVTICHSKT----------------------------RDLAAHTRQADIVVA 207 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC--CEEEEecCCC----------------------------CCHHHHhhhCCEEEE
Confidence 679999999888 999999999988 8999864321 256677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++...+ +. ..++++|++||++.
T Consensus 208 avG~~~~---i~--~~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRNV---LT--ADMVKPGATVIDVG 230 (285)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9995442 22 26788999999875
No 265
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.56 E-value=0.0048 Score=61.98 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=50.4
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||.|.|+ |.+|..++..|.++| |+|++++|+.+....+...+.... ..+ +.-..++.++++++|+||.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~~~~~l~~~~v~~v-~~D------l~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLRKASFLKEWGAELV-YGD------LSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChHHhhhHhhcCCEEE-ECC------CCCHHHHHHHHCCCCEEEEC
Confidence 68999995 999999999999999 999999999765544443222110 001 11012345678899999998
Q ss_pred Cc
Q 012720 207 MP 208 (458)
Q Consensus 207 Vp 208 (458)
+.
T Consensus 72 ~~ 73 (317)
T CHL00194 72 ST 73 (317)
T ss_pred CC
Confidence 65
No 266
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.55 E-value=0.007 Score=66.76 Aligned_cols=92 Identities=17% Similarity=0.301 Sum_probs=64.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCCE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADY 202 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDi 202 (458)
..+|.|+|.|.+|..+|+.|.++| ++++++|.++++++.+++.|... +.++. +++ ++ -++++|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRKFGMKV-FYGDA---------TRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhcCCeE-EEEeC---------CCHHHHHhcCCCcCCE
Confidence 468999999999999999999998 99999999999999998866432 22221 122 21 2468999
Q ss_pred EEEcCcccc-HHHHHHhhhhcCCCCCeEEE
Q 012720 203 CLHAMPVQF-SSSFLEGISDYVDPGLPFIS 231 (458)
Q Consensus 203 VilaVp~~~-v~~vl~~i~~~l~~~~ivV~ 231 (458)
+|+++.++. ...++..++.+.+ +..++.
T Consensus 468 vvv~~~d~~~n~~i~~~ar~~~p-~~~iia 496 (621)
T PRK03562 468 LINAIDDPQTSLQLVELVKEHFP-HLQIIA 496 (621)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCC-CCeEEE
Confidence 999998754 3444444444443 434443
No 267
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.53 E-value=0.0083 Score=59.66 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=55.4
Q ss_pred CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||.|. .|.++|..|.+.| ..|++++|... ++.+.++++|+||.
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~g--atVtv~~~~t~----------------------------~L~~~~~~aDIvI~ 208 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNAN--ATVTICHSRTQ----------------------------NLPELVKQADIIVG 208 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCC--CEEEEEeCCch----------------------------hHHHHhccCCEEEE
Confidence 57999999998 9999999999998 79999987321 34455689999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|++... .+. ...++++.+|+++.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996332 111 24578899998874
No 268
>PRK08328 hypothetical protein; Provisional
Probab=96.51 E-value=0.011 Score=57.11 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=35.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
..||+|+|+|..|+.++..|++.|. .+++++|.+.-....+.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~R 69 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTPELSNLNR 69 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCccChhhhcc
Confidence 4689999999999999999999995 579999987644444443
No 269
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.49 E-value=0.0095 Score=60.43 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=61.6
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720 129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (458)
Q Consensus 129 kI~IIGa-G~mG~~iA~~La~aG~~-----~~V~v~~r~~~~--~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (458)
||+|||+ |.+|+.+|..|+..+.- +++.++|+.+.. ++.... ...+.. ..+...+...++..+.++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---Dl~d~~-~~~~~~~~~~~~~~~~~~~a 76 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---ELMDCA-FPLLDGVVPTHDPAVAFTDV 76 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---ehhccc-chhcCceeccCChHHHhCCC
Confidence 6999999 99999999999976520 259999986532 211110 000000 00112233333444568999
Q ss_pred CEEEEcCccc----c------------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 201 DYCLHAMPVQ----F------------SSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 201 DiVilaVp~~----~------------v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
|+||++--.. . ++++...|.++..++.+++..+|-++
T Consensus 77 DiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 77 DVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred CEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 9999976431 1 33444556665446677777887443
No 270
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.48 E-value=0.0033 Score=58.31 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=49.3
Q ss_pred eEEEECcchHHHHH--HHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 129 KVVVLGGGSFGTAM--AAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 129 kI~IIGaG~mG~~i--A~~La~aG-~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
||+|||+|+.-.+. -..+.... . ..++.++|+++++++.+.+... ++......+-.+..++|.++|+++||+||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~--~~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLAR--RMVEEAGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHH--HHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence 79999999875552 23333322 1 2489999999988764433210 01111112345788999999999999999
Q ss_pred EcCcccc
Q 012720 205 HAMPVQF 211 (458)
Q Consensus 205 laVp~~~ 211 (458)
.++-.-.
T Consensus 79 ~~irvGg 85 (183)
T PF02056_consen 79 NQIRVGG 85 (183)
T ss_dssp E---TTH
T ss_pred EEeeecc
Confidence 9987543
No 271
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.47 E-value=0.028 Score=54.70 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=86.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
+|||+|.|+ |.||..+.+.+.+.. ++++. .++|..... ..+.. ..+-+. -+-++.+++++.....++|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~--~g~d~---ge~~g~-~~~gv~v~~~~~~~~~~~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLS--LGSDA---GELAGL-GLLGVPVTDDLLLVKADADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccc--cccch---hhhccc-cccCceeecchhhcccCCCEEE
Confidence 689999998 999999999998875 35544 567765321 10000 000000 0113445566667778999999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~ 284 (458)
=.+-+..+.+.++-...+ +..+|.-+.|+..+..+.+.+..++ +.++..|++..-+. -
T Consensus 75 DFT~P~~~~~~l~~~~~~---~~~lVIGTTGf~~e~~~~l~~~a~~--------v~vv~a~NfSiGvn-----------l 132 (266)
T COG0289 75 DFTTPEATLENLEFALEH---GKPLVIGTTGFTEEQLEKLREAAEK--------VPVVIAPNFSLGVN-----------L 132 (266)
T ss_pred ECCCchhhHHHHHHHHHc---CCCeEEECCCCCHHHHHHHHHHHhh--------CCEEEeccchHHHH-----------H
Confidence 877766666666554442 3445555559988754444433322 34667777654211 0
Q ss_pred CHHHHHHHHHHHhcCCCeEE
Q 012720 285 DRKLANAVQQLLASKHLRIS 304 (458)
Q Consensus 285 d~e~~e~l~~lL~~~g~~v~ 304 (458)
-...++++.++|. ++.+.
T Consensus 133 l~~l~~~aak~l~--~~DiE 150 (266)
T COG0289 133 LFKLAEQAAKVLD--DYDIE 150 (266)
T ss_pred HHHHHHHHHHhcC--CCCEE
Confidence 1345677777777 44444
No 272
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.43 E-value=0.018 Score=58.84 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=59.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCC----------HHHHHHHHhhcCCCccCCCCCCCCce
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENV 187 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~a--------G~~~~V~-v~~r~----------~~~~e~l~~~g~~~~~~~~~~l~~~i 187 (458)
.+||+|+|+|.||..++..|.+. |.+.+|. ++|++ .+.+....+....... ++ ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~-----~~-~~ 75 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD-----YP-EG 75 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc-----Cc-cc
Confidence 46999999999999999999765 3125554 55653 2222232222110000 01 11
Q ss_pred EEeCCHHhhc--CCCCEEEEcCccccH--HHHHHhhhhcCCCCCeEEEeccCC
Q 012720 188 IATTDAKTAL--LGADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 188 ~a~~~~~ea~--~~aDiVilaVp~~~v--~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
..+.+.++++ .+.|+|+.|+|+... +...+-+...+..|..||+..++.
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~p 128 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGP 128 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHH
Confidence 1234677766 368999999997432 222233345556688888765543
No 273
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.43 E-value=0.013 Score=52.17 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=57.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|.|+| ....|..+|..|.+.| ..|++.+++.. ++++.+++||+|+.
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~g--atV~~~~~~t~----------------------------~l~~~v~~ADIVvs 77 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDG--ATVYSCDWKTI----------------------------QLQSKVHDADVVVV 77 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEeCCCCc----------------------------CHHHHHhhCCEEEE
Confidence 67999999 5889999999999988 89998876431 56677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ +. ..++++|++|++..
T Consensus 78 Atg~~~~---i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 78 GSPKPEK---VP--TEWIKPGATVINCS 100 (140)
T ss_pred ecCCCCc---cC--HHHcCCCCEEEEcC
Confidence 9997643 21 45688999999765
No 274
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.38 E-value=0.01 Score=60.66 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCE
Q 012720 126 RTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADY 202 (458)
Q Consensus 126 ~~~kI~IIGa-G~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDi 202 (458)
+.+||+|+|+ |..|..+.+.|.+.++ ..++.++...+..-+.+...+ . .+.+. .+. +.+.++|+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~--------~----~~~v~~~~~-~~~~~~D~ 72 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG--------R----DYTVEELTE-DSFDGVDI 72 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC--------c----eeEEEeCCH-HHHcCCCE
Confidence 3579999996 9999999999998762 124444433221100111111 0 12222 133 34588999
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
||+|+|.....++...+.. .|..||+++.
T Consensus 73 vf~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 101 (344)
T PLN02383 73 ALFSAGGSISKKFGPIAVD---KGAVVVDNSS 101 (344)
T ss_pred EEECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence 9999998877777665433 5889999984
No 275
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0047 Score=61.22 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=67.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
-||+|||.|.+|+--|+...--| .+|++.|++.+++..+...... ++.--..-..++++++..+|+||-+|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~~-------rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFGG-------RVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred ccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhCc-------eeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 58999999999999888777555 8999999998877666543110 00000011135677889999999887
Q ss_pred cc---ccHHHHHHhhhhcCCCCCeEEEec
Q 012720 208 PV---QFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 208 p~---~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
-- .+=.=+.++..+.++||++||++.
T Consensus 240 LIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 42 222234466777899999999975
No 276
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.35 E-value=0.0091 Score=60.78 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=61.4
Q ss_pred hcCCCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCC
Q 012720 124 LERTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGA 200 (458)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~a 200 (458)
|++.+||+|||+ |..|.-+.+.|.++.+ ..++..+...... |.... +.+. .+.+. ++++. ..++
T Consensus 1 ~~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa-------G~~~~-~~~~----~~~v~-~~~~~~~~~~ 67 (336)
T PRK08040 1 MSEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA-------GETLR-FGGK----SVTVQ-DAAEFDWSQA 67 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC-------CceEE-ECCc----ceEEE-eCchhhccCC
Confidence 456789999997 9999999999998532 2466666443221 22111 1111 12332 33332 3689
Q ss_pred CEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
|++|+|+|.....++...+.+ .|..||+++.
T Consensus 68 Dvvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 68 QLAFFVAGREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred CEEEECCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 999999998877776666543 5889999984
No 277
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.34 E-value=0.015 Score=49.95 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=54.6
Q ss_pred CeEEEEC----cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 128 NKVVVLG----GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 128 ~kI~IIG----aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
++|+||| .+.+|..+...|.++| ++|+.++.....+ .++....+++|.-...|++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G--~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDla 59 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG--YEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLA 59 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC--CEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEE
Confidence 4799999 6999999999999998 9999887654211 1345666887733789999
Q ss_pred EEcCccccHHHHHHhhhhc
Q 012720 204 LHAMPVQFSSSFLEGISDY 222 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~ 222 (458)
++++|...+.++++++...
T Consensus 60 vv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 60 VVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp EE-S-HHHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHc
Confidence 9999999999999998664
No 278
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.34 E-value=0.015 Score=55.94 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|+|+|.+|+.+|..|++.|. .+++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 5699999999999999999999995 5788887654
No 279
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.31 E-value=0.0075 Score=63.57 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=50.1
Q ss_pred CeEEEECcchH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 128 ~kI~IIGaG~m-G~~iA~~La~aG--~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
|||+|||+|+. +..+..-|.... . .-+|+++|.++++++.+.+... ++......+-.+..++|.++|+++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~--~~~~~~g~~~~v~~Ttdr~eAl~gADfV 78 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK--ILFKENYPEIKFVYTTDPEEAFTDADFV 78 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence 79999999984 111222333221 1 2689999999987665433110 0111111233578899999999999999
Q ss_pred EEcCc
Q 012720 204 LHAMP 208 (458)
Q Consensus 204 ilaVp 208 (458)
|.+.-
T Consensus 79 i~~ir 83 (437)
T cd05298 79 FAQIR 83 (437)
T ss_pred EEEee
Confidence 99874
No 280
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.012 Score=61.78 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~ 164 (458)
..++|.|||.|.+|.++|..|.+.| ++|+++|++...
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G--~~V~g~D~~~~~ 38 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKG--VYVIGVDKSLEA 38 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCC--CEEEEEeCCccc
Confidence 3468999999999999999999999 899999987653
No 281
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.24 E-value=0.0072 Score=49.95 Aligned_cols=78 Identities=12% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CCE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi 202 (458)
..||+|+|+|++|.+++..+.+ .| +.+ .++|.++++. |.. . .++.+..+.+++.+. .|+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g--~~i~~~~dv~~~~~------G~~---i------~gipV~~~~~~l~~~~~i~i 65 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG--FGIVAVFDVDPEKI------GKE---I------GGIPVYGSMDELEEFIEIDI 65 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC--ECEEEEEEECTTTT------TSE---E------TTEEEESSHHHHHHHCTTSE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC--CCCEEEEEcCCCcc------CcE---E------CCEEeeccHHHhhhhhCCCE
Confidence 4589999999999999865543 34 554 4678887532 111 0 135555566665444 999
Q ss_pred EEEcCccccHHHHHHhhhh
Q 012720 203 CLHAMPVQFSSSFLEGISD 221 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~ 221 (458)
.++|||+....+++.++..
T Consensus 66 aii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 66 AIITVPAEAAQEVADELVE 84 (96)
T ss_dssp EEEES-HHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHHHH
Confidence 9999999888888877655
No 282
>PRK10206 putative oxidoreductase; Provisional
Probab=96.23 E-value=0.018 Score=58.86 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720 127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (458)
+.||||||+|.++.. .+..+.....+.+|. +++++++.. +..+.. + .+..++|.++.+. +.|+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~------~------~~~~~~~~~ell~~~~iD~ 67 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY------S------HIHFTSDLDEVLNDPDVKL 67 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc------C------CCcccCCHHHHhcCCCCCE
Confidence 368999999997753 234343221126665 688887543 333221 0 1345568888875 6799
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
|++|+|.....++...... .|..|+ +-|-+..
T Consensus 68 V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~ 99 (344)
T PRK10206 68 VVVCTHADSHFEYAKRALE---AGKNVL-VEKPFTP 99 (344)
T ss_pred EEEeCCchHHHHHHHHHHH---cCCcEE-EecCCcC
Confidence 9999998877666655433 354443 4555543
No 283
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.23 E-value=0.012 Score=59.97 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 5789999999999999999999993 3899999875
No 284
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.22 E-value=0.024 Score=57.84 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=58.3
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCC-CCceEEe-CCHHhhcCCCCEE
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKL-PENVIAT-TDAKTALLGADYC 203 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l-~~~i~a~-~~~~ea~~~aDiV 203 (458)
|||+|+|+ |.||..++..|.++. .++|..+ ++....-+.+.+......| .+..- ...+.+. .+. +...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~-~~~l~~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP-YFELAKVVASPRSAGKRYGEAVKWIEP-GDMPEYVRDLPIVEPEP-VASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CceEEEEEEChhhcCCcchhhcccccc-CCCccccceeEEEeCCH-HHhccCCEE
Confidence 58999996 999999999998865 2577755 4443211111111000000 00000 0112222 133 345789999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
++|+|.....++...+.. .|..+|+++.
T Consensus 78 f~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred EEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 999998876666654433 4778888873
No 285
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.16 E-value=0.031 Score=57.29 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=60.7
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCcc--CCCCCCCCceEEe-CCHHhhcCCCC
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRY--FPEQKLPENVIAT-TDAKTALLGAD 201 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~--~~~~~l~~~i~a~-~~~~ea~~~aD 201 (458)
++||+|+| .|.+|..+...|.+.. ..+++++.+++.........-. ...+ +.+. . ..+.+. .++++ +.++|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p-~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHP-WFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-V-ADMEVVSTDPEA-VDDVD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCC-CceEEEEEcChhhcCCccccccccccccccccc-c-cceEEEeCCHHH-hcCCC
Confidence 58999998 7999999999999765 2588877565533221111000 0000 0000 0 112222 25544 57899
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+|++|+|......+.+.+.. .|..+|+++.
T Consensus 79 vVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred EEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 99999998766666554433 4777888874
No 286
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.15 E-value=0.0072 Score=57.47 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La--~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (458)
..+|+|||+|.+|..++..+. ..| +++. ++|++++...... .+. .+...+++.+.++ +.|
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g--~~ivgv~D~d~~~~~~~i---------~g~----~v~~~~~l~~li~~~~iD 148 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG--FKIVAAFDVDPEKIGTKI---------GGI----PVYHIDELEEVVKENDIE 148 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC--cEEEEEEECChhhcCCEe---------CCe----EEcCHHHHHHHHHHCCCC
Confidence 468999999999999998643 344 7776 5788765331100 010 0112235556554 499
Q ss_pred EEEEcCccccHHHHHHhhh
Q 012720 202 YCLHAMPVQFSSSFLEGIS 220 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~ 220 (458)
.+++|+|.....++...+.
T Consensus 149 ~ViIa~P~~~~~~i~~~l~ 167 (213)
T PRK05472 149 IGILTVPAEAAQEVADRLV 167 (213)
T ss_pred EEEEeCCchhHHHHHHHHH
Confidence 9999999877666655443
No 287
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.14 E-value=0.011 Score=62.05 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=49.7
Q ss_pred CeEEEECcchH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 128 ~kI~IIGaG~m-G~~iA~~La~aG--~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
|||+|||+|+. ...+...|++.. . ..+|+++|.++++.+.+.+... ++......+-.+..++|.++|+++||+|
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~--~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999983 212233333222 1 2689999999987664332110 0001111123578899999999999999
Q ss_pred EEcCc
Q 012720 204 LHAMP 208 (458)
Q Consensus 204 ilaVp 208 (458)
|.+.-
T Consensus 79 i~~ir 83 (425)
T cd05197 79 INQFR 83 (425)
T ss_pred EEeee
Confidence 99874
No 288
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.023 Score=59.97 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=47.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHH----HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVC----QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~----e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
.++|.|+|+|.+|.++|..|++.| ++|++++++. +.+ +++.+.+.. +...+..++...++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIE------------LVLGEYPEEFLEGVD 70 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCE------------EEeCCcchhHhhcCC
Confidence 478999999999999999999999 9999999975 223 223222221 111112223456799
Q ss_pred EEEEcCcc
Q 012720 202 YCLHAMPV 209 (458)
Q Consensus 202 iVilaVp~ 209 (458)
+||.+.-.
T Consensus 71 ~vv~~~g~ 78 (450)
T PRK14106 71 LVVVSPGV 78 (450)
T ss_pred EEEECCCC
Confidence 99998753
No 289
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.12 E-value=0.015 Score=52.87 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=50.4
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|.|||-+ .+|.+++..|.+.| ..|++.....+ ++++.++.||+||.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~--atVt~~h~~T~----------------------------~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKG--ATVTICHSKTK----------------------------NLQEITRRADIVVS 85 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TTSS----------------------------SHHHHHTTSSEEEE
T ss_pred CCEEEEECCcCCCChHHHHHHHhCC--CeEEeccCCCC----------------------------cccceeeeccEEee
Confidence 6799999976 69999999999998 89998766431 55666789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ +. ..++++|.+||++.
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--
T ss_pred eeccccc---cc--cccccCCcEEEecC
Confidence 9986443 11 35688999999875
No 290
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.12 E-value=0.018 Score=57.17 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=57.0
Q ss_pred CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||-|. +|.++|..|.+.| ..|+++.+.. .++.+.++.||+||.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG--CTVTVCHRFT----------------------------KNLRHHVRNADLLVV 208 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC--CeEEEEECCC----------------------------CCHHHHHhhCCEEEE
Confidence 57999999988 9999999999888 8999987542 156677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++..... +. ..++++|++||++.
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9964332 11 26678899999876
No 291
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.11 E-value=0.014 Score=48.89 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|.|||.|.+|..=+..|.+.| .+|++++.+.+..+ .... . .....++.+.++|+|+.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~~~~~----~~i~------------~-~~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEIEFSE----GLIQ------------L-IRREFEEDLDGADLVFAA 67 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSEHHHH----TSCE------------E-EESS-GGGCTTESEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCchhhhh----hHHH------------H-HhhhHHHHHhhheEEEec
Confidence 578999999999999999999999 99999999862122 1110 0 011223447889999999
Q ss_pred CccccHHHHHHhh
Q 012720 207 MPVQFSSSFLEGI 219 (458)
Q Consensus 207 Vp~~~v~~vl~~i 219 (458)
+....+.+.+...
T Consensus 68 t~d~~~n~~i~~~ 80 (103)
T PF13241_consen 68 TDDPELNEAIYAD 80 (103)
T ss_dssp SS-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9876655544443
No 292
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.11 E-value=0.013 Score=58.39 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=57.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCH---HHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDP---AVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGAD 201 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~-V~v~~r~~---~~~e~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aD 201 (458)
.+++.|+|+|.+|.+++..|++.| .+ |++++|+. ++++++.+.- ...+ +.... ...+.-..+.++.+..+|
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G--~~~V~I~~R~~~~~~~a~~l~~~l-~~~~-~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDG--AKEITIFNIKDDFYERAEQTAEKI-KQEV-PECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCchHHHHHHHHHHHH-hhcC-CCceeEEechhhhhHHHhhhccCC
Confidence 467999999999999999999999 65 99999986 5555554321 0000 00000 000000012233456789
Q ss_pred EEEEcCcccc---HHHHHHhhhhcCCCCCeEEEec
Q 012720 202 YCLHAMPVQF---SSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 202 iVilaVp~~~---v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+||-|+|..- .....-.-...+.++.+++++.
T Consensus 202 ilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 236 (289)
T PRK12548 202 ILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTV 236 (289)
T ss_pred EEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEec
Confidence 9999998521 1100000012355667777765
No 293
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.09 E-value=0.012 Score=58.69 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=27.2
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
||.|||+|.+|+.+|..|+..|. .+++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence 69999999999999999999995 466666644
No 294
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.07 E-value=0.02 Score=50.61 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.4
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 68999999999999999999993 3799998774
No 295
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.06 E-value=0.012 Score=64.06 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
..||.|+|+|..|+..|..|+..|. -+++++|.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV-g~ItlVD~D 371 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV-RHITFVDNG 371 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCC
Confidence 4689999999999999999999995 467777754
No 296
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.03 E-value=0.047 Score=55.41 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=53.9
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcC-CCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALL-GADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~-~aDiV 203 (458)
..+|+|+|+|.+|.. |-.+++ .| .+|+.++|++++.+..++.|....+ ... .+..+.++ .+|+|
T Consensus 167 G~~V~I~G~GGlGh~-avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i----------~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 167 GKWVAVVGAGGLGHM-AVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVI----------NSSDSDALEAVKEIADAI 233 (339)
T ss_pred CCEEEEECCcHHHHH-HHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEE----------EcCCchhhHHhHhhCcEE
Confidence 468999999999985 555555 67 9999999999999888887754221 111 12222222 39999
Q ss_pred EEcCccccHHHHHHhh
Q 012720 204 LHAMPVQFSSSFLEGI 219 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i 219 (458)
|.+++...+...++-+
T Consensus 234 i~tv~~~~~~~~l~~l 249 (339)
T COG1064 234 IDTVGPATLEPSLKAL 249 (339)
T ss_pred EECCChhhHHHHHHHH
Confidence 9999944455544443
No 297
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.02 E-value=0.055 Score=53.17 Aligned_cols=44 Identities=11% Similarity=0.367 Sum_probs=40.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (458)
Q Consensus 126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~ 171 (458)
.++++.|-|+ +.+|..+|..|+++| ++|+++.|++++++++.++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKE 49 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHH
Confidence 4578999996 999999999999999 9999999999999888764
No 298
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.96 E-value=0.027 Score=55.88 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=64.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.+++.|+|+|..+.+++..|++.|. .++++++|+.++++++.+.-.... .. .......+.+. ..++|+||-|
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~--~~----~~~~~~~~~~~-~~~~dliINa 197 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELG--AA----VEAAALADLEG-LEEADLLINA 197 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc--cc----ccccccccccc-ccccCEEEEC
Confidence 4789999999999999999999993 579999999999888876421100 00 00111122222 2269999999
Q ss_pred Cccc--cH--HHHHHhhhhcCCCCCeEEEec
Q 012720 207 MPVQ--FS--SSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 207 Vp~~--~v--~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|.. .- ...+. ...++++.++.++.
T Consensus 198 Tp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 198 TPVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 9952 11 11222 44566788888875
No 299
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.96 E-value=0.014 Score=59.54 Aligned_cols=88 Identities=17% Similarity=0.288 Sum_probs=57.1
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCCCeE---EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEE
Q 012720 129 KVVVLG-GGSFGTAMAAHVANKKSQLKV---YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYC 203 (458)
Q Consensus 129 kI~IIG-aG~mG~~iA~~La~aG~~~~V---~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiV 203 (458)
||+|+| .|..|..+...|.+++ |.+ .++.+.+..-+.+...+ . .+... .+.+ .+.++|++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~--hp~~~l~~~as~~~~g~~~~~~~--------~----~~~~~~~~~~-~~~~~D~v 65 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERN--FPIDKLVLLASDRSAGRKVTFKG--------K----ELEVNEAKIE-SFEGIDIA 65 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCC--CChhhEEEEeccccCCCeeeeCC--------e----eEEEEeCChH-HhcCCCEE
Confidence 699999 5999999999999987 543 34555543211221111 0 12221 1333 35889999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
|+|++.....++...+.. .|.+||+++.
T Consensus 66 ~~a~g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 66 LFSAGGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred EECCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence 999999887777666543 5778998873
No 300
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.95 E-value=0.13 Score=48.89 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|.|||.|..|..=+..|.+.| .+|+++.... +....+...+.- .. +.-.-++++ +.++++||.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs~~~~~el~~~~~~~~i-~~---------~~~~~~~~~-~~~~~lvia 78 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG--ADVTVVSPEFEPELKALIEEGKI-KW---------IEREFDAED-LDDAFLVIA 78 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CEEEEEcCCccHHHHHHHHhcCc-ch---------hhcccChhh-hcCceEEEE
Confidence 579999999999999999999999 9999998765 445555544321 00 010113444 456999999
Q ss_pred cCccccHHHHHHh
Q 012720 206 AMPVQFSSSFLEG 218 (458)
Q Consensus 206 aVp~~~v~~vl~~ 218 (458)
|+.+..+.+-+..
T Consensus 79 At~d~~ln~~i~~ 91 (210)
T COG1648 79 ATDDEELNERIAK 91 (210)
T ss_pred eCCCHHHHHHHHH
Confidence 9998765554433
No 301
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.95 E-value=0.016 Score=55.27 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=51.3
Q ss_pred EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 130 I~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|+|+|+ |.+|..++..|.+.+ ++|+++.|+.. ..+.+...|.... ..+. .-.+++.++++++|.||++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~--~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~------~~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG--FSVRALVRDPSSDRAQQLQALGAEVV-EADY------DDPESLVAALKGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--GCEEEEESSSHHHHHHHHHHTTTEEE-ES-T------T-HHHHHHHHTTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC--CCcEEEEeccchhhhhhhhcccceEe-eccc------CCHHHHHHHHcCCceEEee
Confidence 789997 999999999999988 99999999863 4566666554211 0000 0112455678999999999
Q ss_pred Ccc
Q 012720 207 MPV 209 (458)
Q Consensus 207 Vp~ 209 (458)
++.
T Consensus 72 ~~~ 74 (233)
T PF05368_consen 72 TPP 74 (233)
T ss_dssp SSC
T ss_pred cCc
Confidence 993
No 302
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.93 E-value=0.15 Score=48.82 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|.|||.|.++..=+..|.+.| .+|+++...- +.+..+.+.+. .... .-.-+..+ +.++++||.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~~~-i~~~---------~r~~~~~d-l~g~~LVia 91 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKYGN-LKLI---------KGNYDKEF-IKDKHLIVI 91 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE---------eCCCChHH-hCCCcEEEE
Confidence 568999999999999999999999 8999998653 23444443321 0100 00013334 578999999
Q ss_pred cCccccHHHHHHhhh
Q 012720 206 AMPVQFSSSFLEGIS 220 (458)
Q Consensus 206 aVp~~~v~~vl~~i~ 220 (458)
|+....+-.-+....
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 998776655554433
No 303
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.92 E-value=0.02 Score=56.76 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||.| .+|.++|..|.++| ..|+++.... .++.+.++.||+||.
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~g--AtVtv~hs~t----------------------------~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAG--ASVSVCHILT----------------------------KDLSFYTQNADIVCV 206 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCC--CEEEEEeCCc----------------------------HHHHHHHHhCCEEEE
Confidence 6799999998 99999999999998 8999874322 144566789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ + -..++++|++||++.
T Consensus 207 AvG~p~~---i--~~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---I--KASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---C--CHHHcCCCcEEEEee
Confidence 9985443 1 134568899999876
No 304
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.92 E-value=0.013 Score=56.91 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
..||.|+|+|.+|+.+|..|++.|. -+++++|.+.-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCcc
Confidence 4789999999999999999999995 57888888753
No 305
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.92 E-value=0.035 Score=57.31 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 4689999999999999999999994 4888998873
No 306
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.92 E-value=0.018 Score=60.46 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=49.8
Q ss_pred CeEEEECcchHHH-HHHHHHHhcC--C-CCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 128 NKVVVLGGGSFGT-AMAAHVANKK--S-QLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 128 ~kI~IIGaG~mG~-~iA~~La~aG--~-~~~V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
|||+|||+|+.-+ .+...|+... . .-+|+++|.+ +++++.+.+... ++......+..+..++|.++++++||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~--~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK--RMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 6999999999633 2333333321 1 2689999999 777654332110 000111112357889999999999999
Q ss_pred EEEcCc
Q 012720 203 CLHAMP 208 (458)
Q Consensus 203 VilaVp 208 (458)
||.+.-
T Consensus 79 Vi~~~~ 84 (419)
T cd05296 79 VFTQIR 84 (419)
T ss_pred EEEEEe
Confidence 999874
No 307
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.85 E-value=0.017 Score=58.17 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=55.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
++||+|||+ |..|.-+.+.|.++. ..++.....+... . + .+.++...++|++|+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~---------~------------~---~~~~~~~~~~DvvFl 56 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRK---------D------------A---AARRELLNAADVAIL 56 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCC---------c------------c---cCchhhhcCCCEEEE
Confidence 579999995 999999999999875 2344333322210 0 0 122334568999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
|+|.....++...+.+ .|..||+++.
T Consensus 57 alp~~~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 57 CLPDDAAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEECCh
Confidence 9998877776666543 5889999984
No 308
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.82 E-value=0.013 Score=54.02 Aligned_cols=78 Identities=15% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La--~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (458)
+-++.|||+|++|.+++.+=- ++| ++++ +||.+++.+ |.... + + .+.-.++++..++ +.|
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~--~~iv~~FDv~~~~V------G~~~~---~--v--~V~~~d~le~~v~~~dv~ 148 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNG--MKIVAAFDVDPDKV------GTKIG---D--V--PVYDLDDLEKFVKKNDVE 148 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcC--ceEEEEecCCHHHh------CcccC---C--e--eeechHHHHHHHHhcCcc
Confidence 468999999999999987643 444 6665 689988743 21111 1 0 1222345555555 789
Q ss_pred EEEEcCccccHHHHHHhh
Q 012720 202 YCLHAMPVQFSSSFLEGI 219 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i 219 (458)
+.|+|||+..-.++++.+
T Consensus 149 iaiLtVPa~~AQ~vad~L 166 (211)
T COG2344 149 IAILTVPAEHAQEVADRL 166 (211)
T ss_pred EEEEEccHHHHHHHHHHH
Confidence 999999987666666554
No 309
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.78 E-value=0.042 Score=46.83 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHhcCC--CCeEE-EEeCC----HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEEE
Q 012720 134 GGGSFGTAMAAHVANKKS--QLKVY-MLMRD----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL 204 (458)
Q Consensus 134 GaG~mG~~iA~~La~aG~--~~~V~-v~~r~----~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVi 204 (458)
|+|.||..++..|.+... +.+|. +++|+ ........ ....++++++.+. +.|+||
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFP----------------DEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHT----------------HSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcc----------------cccccCCHHHHhcCcCCCEEE
Confidence 899999999999987630 15655 56777 11111111 1235668888877 899999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
-|..+..+.+.+..+. +.|..||+.++|...
T Consensus 65 E~t~~~~~~~~~~~~L---~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 65 ECTSSEAVAEYYEKAL---ERGKHVVTANKGALA 95 (117)
T ss_dssp E-SSCHHHHHHHHHHH---HTTCEEEES-HHHHH
T ss_pred ECCCchHHHHHHHHHH---HCCCeEEEECHHHhh
Confidence 9988877777665544 468889998887544
No 310
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=95.78 E-value=0.045 Score=53.36 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.-||.|+|.|.+|.+.|..+...|..-++.++|.++++++- +-....+-..+.-.+++.+..|... .+++++||++
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkG---E~MDLqH~s~f~~~~~V~~~~Dy~~-sa~S~lvIiT 95 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKG---EMMDLQHGSAFLSTPNVVASKDYSV-SANSKLVIIT 95 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhh---hhhhhccccccccCCceEecCcccc-cCCCcEEEEe
Confidence 46899999999999999999888755688999998875431 1111111001111235666656643 5789999998
Q ss_pred Ccccc------------HHHHHHhhhhc---CCCCCeEEEeccCCCc
Q 012720 207 MPVQF------------SSSFLEGISDY---VDPGLPFISLSKGLEL 238 (458)
Q Consensus 207 Vp~~~------------v~~vl~~i~~~---l~~~~ivV~~snGi~~ 238 (458)
.-..+ --++++.+.|. ..|+++++-.+|-++.
T Consensus 96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI 142 (332)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence 86532 12233444332 3468888888876553
No 311
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.017 Score=60.30 Aligned_cols=81 Identities=27% Similarity=0.319 Sum_probs=51.8
Q ss_pred CCCeEEEECcchHHHHH--HHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 126 RTNKVVVLGGGSFGTAM--AAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~i--A~~La~aG-~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
+++||+|||+|+.+.+- ..-|.+.- + ..++.++|.++++.+.+...- .++......+-.+..++|.++|+++||
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~--~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILA--KKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHH--HHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 46799999999987642 22222221 1 258999999998766332110 001111122345788999999999999
Q ss_pred EEEEcCc
Q 012720 202 YCLHAMP 208 (458)
Q Consensus 202 iVilaVp 208 (458)
+|+.+.-
T Consensus 80 fVi~~~r 86 (442)
T COG1486 80 FVITQIR 86 (442)
T ss_pred EEEEEEe
Confidence 9999874
No 312
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.71 E-value=0.043 Score=51.61 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||+|+|+|.+|+.++..|+.+|. ..++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 4689999999999999999999995 5799998774
No 313
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.70 E-value=0.029 Score=62.11 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+.+||+|||+|..|...|..|++.| ++|++|++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence 3689999999999999999999999 9999999876
No 314
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.69 E-value=0.031 Score=57.12 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=58.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCC
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGAD 201 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~---V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aD 201 (458)
.+||+|||+ |..|.-|.+.|.++. .++ +.++...... |.... +.+. .+.+. .+.++ ..++|
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~-~f~v~~l~~~aS~~sa-------Gk~~~-~~~~----~l~v~~~~~~~-~~~~D 70 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKET-KFNIAEVTLLSSKRSA-------GKTVQ-FKGR----EIIIQEAKINS-FEGVD 70 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCC-CCCcccEEEEECcccC-------CCCee-eCCc----ceEEEeCCHHH-hcCCC
Confidence 479999997 999999999999533 155 5555543211 22211 1111 12221 24444 57899
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
++|+|+|.....++...+.. .|..||+++.
T Consensus 71 ivf~a~~~~~s~~~~~~~~~---~G~~VID~Ss 100 (347)
T PRK06728 71 IAFFSAGGEVSRQFVNQAVS---SGAIVIDNTS 100 (347)
T ss_pred EEEECCChHHHHHHHHHHHH---CCCEEEECch
Confidence 99999998877777666533 5889999984
No 315
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.68 E-value=0.055 Score=54.34 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=54.6
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.||+|+|+ |..|.-+.+.|+++. ..++....-+.. + . . .+.++.++++|++|+|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~----~-----~--------------~-~~~~~~~~~~D~vFla 56 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR----K-----D--------------A-AERAKLLNAADVAILC 56 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc----c-----C--------------c-CCHhHhhcCCCEEEEC
Confidence 48999996 999999999999875 234443322211 0 0 0 1344556789999999
Q ss_pred CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+|.....+++..+. ..|..||+++.
T Consensus 57 lp~~~s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 57 LPDDAAREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred CCHHHHHHHHHHHH---hCCCEEEECCh
Confidence 99887777666553 35888999983
No 316
>PRK08223 hypothetical protein; Validated
Probab=95.68 E-value=0.044 Score=54.45 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|||+|.+|+.++..|+++|. -+++++|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 4689999999999999999999995 4788888775
No 317
>PRK06153 hypothetical protein; Provisional
Probab=95.67 E-value=0.028 Score=57.87 Aligned_cols=101 Identities=19% Similarity=0.330 Sum_probs=62.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH----------------------HHHHHHhhcCCCccCCCCCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA----------------------VCQSINEKHCNCRYFPEQKLP 184 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~----------------------~~e~l~~~g~~~~~~~~~~l~ 184 (458)
..||+|||+|..|+.++..|++.|. -+++++|.+.= +++.+++.-.. ..
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~--------in 246 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN--------MR 246 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH--------hC
Confidence 5799999999999999999999994 47888876631 11112111000 01
Q ss_pred CceEE-----eCCHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 185 ENVIA-----TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 185 ~~i~a-----~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
.++.+ ..+..+.+.++|+||.|+-....+.++.+.... .+..+|++..|+..
T Consensus 247 ~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~~ 303 (393)
T PRK06153 247 RGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLEL 303 (393)
T ss_pred CeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeeccee
Confidence 11211 112123467899999999877777766554332 25667776655543
No 318
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.65 E-value=0.073 Score=53.09 Aligned_cols=75 Identities=24% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHhhcCCCccCCCCCCCCceEEeC--C---HHhhcC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT--D---AKTALL 198 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~---~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~---~~ea~~ 198 (458)
.+++.|||+|..+.+++..|+..|. .+|++++|++ ++++.+.+.- ...+ ...+...+ + +.+.+.
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~-~~~~------~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRV-NENT------DCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHh-hhcc------CceEEEechhhhhhhhhhcc
Confidence 4689999999999999999998883 5899999994 4666665431 1000 00111211 1 223456
Q ss_pred CCCEEEEcCcc
Q 012720 199 GADYCLHAMPV 209 (458)
Q Consensus 199 ~aDiVilaVp~ 209 (458)
++|+||-|+|.
T Consensus 196 ~aDivINaTp~ 206 (288)
T PRK12749 196 SADILTNGTKV 206 (288)
T ss_pred cCCEEEECCCC
Confidence 89999999985
No 319
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.63 E-value=0.032 Score=57.78 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
..||.|+|+|.+|+.++..|++.|. -+++++|++
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 5689999999999999999999994 479999988
No 320
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.58 E-value=0.094 Score=55.59 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=65.4
Q ss_pred CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 126 ~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
..++|+|||+ |.+|..+..+|.+.|+.-+|+.++...+. +. ++.+..+++++-...|
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i~----------------G~~~~~sl~~lp~~~D 66 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---IL----------------GVKAYPSVLEIPDPVD 66 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---cC----------------CccccCCHHHCCCCCC
Confidence 3578999999 88999999999998832267666655321 11 2344557777666789
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
++++++|...+.++++++... .-. .+|.++.|+..
T Consensus 67 lavi~vp~~~~~~~l~e~~~~-gv~-~~vi~s~gf~e 101 (447)
T TIGR02717 67 LAVIVVPAKYVPQVVEECGEK-GVK-GAVVITAGFKE 101 (447)
T ss_pred EEEEecCHHHHHHHHHHHHhc-CCC-EEEEECCCccc
Confidence 999999999999999887653 222 34446667754
No 321
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.57 E-value=0.016 Score=60.18 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=31.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.+|.|||+|.+|.+.|..|+++| ++|+++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 58999999999999999999999 9999999875
No 322
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.54 E-value=0.038 Score=53.40 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=34.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l 168 (458)
+|||.|+|+ |.+|..++..|++.| ++|+++.|+.+.....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG--FAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC--CEEEEEecCHHHHHHh
Confidence 579999995 999999999999998 9999999998765443
No 323
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.49 E-value=0.069 Score=52.67 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..+|.|+|+|.+|+..|..|++.|. .+++++|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGI-GAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 4689999999999999999999995 5799998775
No 324
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.47 E-value=0.038 Score=54.62 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=56.8
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+++.|||.+ ..|.++|..|...| ..|+++.+... ++.+.+++||+||.
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~--atVtv~hs~t~----------------------------~L~~~~~~ADIvI~ 201 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNAD--ATVTICHSKTE----------------------------NLKAELRQADILVS 201 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCC--CeeEEEecChh----------------------------HHHHHHhhCCEEEE
Confidence 5799999988 99999999999888 89998876542 45567789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++...+ +. ..++++|++||++.
T Consensus 202 Avgk~~l---v~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKAGF---IT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcccc---cC--HHHcCCCcEEEEee
Confidence 9974322 11 23468999999986
No 325
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.46 E-value=0.082 Score=53.71 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=51.5
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHh-hcCCCcc-CCC--CCC-CCceEEeCCHHhhcCCCCEE
Q 012720 130 VVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINE-KHCNCRY-FPE--QKL-PENVIATTDAKTALLGADYC 203 (458)
Q Consensus 130 I~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~-~g~~~~~-~~~--~~l-~~~i~a~~~~~ea~~~aDiV 203 (458)
|+|+|.|.+|...++.+.+.. +.+|.. .|.+++....+.. .+....+ .+. ..+ ..++.+..++++.+.++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~-d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD-DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC-CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence 689999999999999987653 367664 4666654444433 2221111 011 001 12355566788888999999
Q ss_pred EEcCcccc
Q 012720 204 LHAMPVQF 211 (458)
Q Consensus 204 ilaVp~~~ 211 (458)
+.|+|...
T Consensus 80 ve~Tp~~~ 87 (333)
T TIGR01546 80 VDATPGGI 87 (333)
T ss_pred EECCCCCC
Confidence 99999653
No 326
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.45 E-value=0.064 Score=50.46 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|||+|.+|+.++..|+.+|. .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 4689999999999999999999995 5799999874
No 327
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.41 E-value=0.039 Score=55.12 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=54.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---hhcCCCC
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TALLGAD 201 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~---ea~~~aD 201 (458)
..++|+|+|+|.+|+ ||-.++++ ++++|+++++.. ++-+.++..|.. .| +..+.|.+ ++.+.-|
T Consensus 181 pG~~vgI~GlGGLGh-~aVq~AKA-MG~rV~vis~~~~kkeea~~~LGAd-~f---------v~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGH-MAVQYAKA-MGMRVTVISTSSKKKEEAIKSLGAD-VF---------VDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcccch-HHHHHHHH-hCcEEEEEeCCchhHHHHHHhcCcc-ee---------EEecCCHHHHHHHHHhhc
Confidence 468999999999888 78888877 349999999997 444455544422 11 12222332 2233457
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~ 232 (458)
.++-++.+. .+..++.+..+++.+-.+|.+
T Consensus 249 g~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 249 GGIDTVSNL-AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred Ccceeeeec-cccchHHHHHHhhcCCEEEEE
Confidence 777777643 222233344455544444433
No 328
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.083 Score=56.64 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=48.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
.++|.|+|+|..|.+.+..|...| ++|+++|+.++..+.+.+.|.. +.......+.+.++|+||.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~~~~l~~~g~~------------~~~~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDALRPHAERGVA------------TVSTSDAVQQIADYALVVTS 77 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHhCCCE------------EEcCcchHhHhhcCCEEEEC
Confidence 468999999999999999999998 9999999877655555443321 11111222346788999987
Q ss_pred Cc
Q 012720 207 MP 208 (458)
Q Consensus 207 Vp 208 (458)
-.
T Consensus 78 pG 79 (488)
T PRK03369 78 PG 79 (488)
T ss_pred CC
Confidence 54
No 329
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.076 Score=56.39 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
.+||+|+|+|.-|.++|..|.+.| ++|+++|+++. ..+.+.+.|.. +..-....+.+.++|
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~------------~~~~~~~~~~~~~~d 79 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVK------------LVLGENYLDKLDGFD 79 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCE------------EEeCCCChHHhccCC
Confidence 468999999999999999999999 99999997642 12345444421 111112223357899
Q ss_pred EEEEc
Q 012720 202 YCLHA 206 (458)
Q Consensus 202 iVila 206 (458)
+||.+
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99987
No 330
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.39 E-value=0.097 Score=53.88 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~---V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
|++|+|||+ |.+|.-|-++|.++. ++. +.+++.... +.....+.+... .+....+.++ +.++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~-~f~~~~l~~~ss~~s--------g~~~~~f~g~~~--~v~~~~~~~~-~~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN-DFDLIEPVFFSTSQA--------GGAAPSFGGKEG--TLQDAFDIDA-LKKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC-CCCcCcEEEecchhh--------CCcccccCCCcc--eEEecCChhH-hcCCCE
Confidence 479999997 999999998555443 144 555544321 111111222111 1222223444 578999
Q ss_pred EEEcCccccHHHHHHhhhhcCCCC--CeEEEecc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~--~ivV~~sn 234 (458)
+|+|+|.....++...+.. .| .+||+.+.
T Consensus 69 vf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 69 IITCQGGDYTNEVYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred EEECCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 9999998877777766544 46 56898884
No 331
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.38 E-value=0.033 Score=52.09 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+.| ..|++++.+.... ..+.+. .++. ..+. -....++.+.++.||+||.
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~--AtVti~~~~~~~~--~~~~~~-~~hs---~t~~-~~~~~~l~~~~~~ADIVIs 132 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDG--ARVYSVDINGIQV--FTRGES-IRHE---KHHV-TDEEAMTLDCLSQSDVVIT 132 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC--CEEEEEecCcccc--cccccc-cccc---cccc-cchhhHHHHHhhhCCEEEE
Confidence 67999999 4788999999999998 9999997654211 111000 0000 0000 0000125677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+++..... + =...+++|++||++.
T Consensus 133 AvG~~~~~--i--~~d~ik~GavVIDVG 156 (197)
T cd01079 133 GVPSPNYK--V--PTELLKDGAICINFA 156 (197)
T ss_pred ccCCCCCc--c--CHHHcCCCcEEEEcC
Confidence 99965431 1 035678899999975
No 332
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.36 E-value=0.037 Score=56.14 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=33.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSI 168 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l 168 (458)
||||.|.|+ |.+|+.++..|.++ | ++|++++|+.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~--~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD--WEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC--CeEEEEeCcHHHHHHh
Confidence 478999997 99999999999876 5 8999999977544433
No 333
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.36 E-value=0.053 Score=55.74 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|||+|.+|+.++..|+..|. -+++++|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 4799999999999999999999995 4788888775
No 334
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.36 E-value=0.016 Score=58.84 Aligned_cols=107 Identities=10% Similarity=0.115 Sum_probs=58.5
Q ss_pred CeEEEECcchHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHHHHhhcCCCcc----CCCCCCC-CceEEeCCHHh
Q 012720 128 NKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQSINEKHCNCRY----FPEQKLP-ENVIATTDAKT 195 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~a------G~~~~V~-v~~r~~~~~e~l~~~g~~~~~----~~~~~l~-~~i~a~~~~~e 195 (458)
|||+|||.|++|..++..|.+. |.+.+|+ +.+++... +...|++... .....+. .... ..+.++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l---~~~~Gldl~~l~~~~~~g~l~~~~~~-~~~~~~ 76 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSY---YNERGLDIGKIISYKEKGRLEEIDYE-KIKFDE 76 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcc---cCCcCCChHHHHHHHhcCccccCCCC-cCCHHH
Confidence 5899999999999999999873 3235544 45655321 1112221100 0000000 0000 013444
Q ss_pred hc-CCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 196 AL-LGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 196 a~-~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
.+ .++|++|-|+++.. -.....-+.+.++.|..||...||...
T Consensus 77 ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA 121 (326)
T PRK06392 77 IFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA 121 (326)
T ss_pred HhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH
Confidence 32 47899999998521 112233445566778899988887543
No 335
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.33 E-value=0.16 Score=51.22 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=63.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcC-CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC--CE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA--DY 202 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG-~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a--Di 202 (458)
.-|+||+|+|.|+.-+++.|.-.- .+|.|+ +.+|+.+.+.++.+.+. +| +.++..+.++.+++. |+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~---------~~-~~k~y~syEeLakd~~vDv 75 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN---------IP-NPKAYGSYEELAKDPEVDV 75 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC---------CC-CCccccCHHHHhcCCCcCE
Confidence 358999999999999999997432 137766 67898888888876542 22 345677888887755 99
Q ss_pred EEEcCccccHHHHHHhhhh
Q 012720 203 CLHAMPVQFSSSFLEGISD 221 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~ 221 (458)
|.+++|..+..+++-.++.
T Consensus 76 Vyi~~~~~qH~evv~l~l~ 94 (351)
T KOG2741|consen 76 VYISTPNPQHYEVVMLALN 94 (351)
T ss_pred EEeCCCCccHHHHHHHHHH
Confidence 9999998887777755544
No 336
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.32 E-value=0.032 Score=44.14 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
||.|||+|..|.-+|..|++.| .+|+++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccch
Confidence 6899999999999999999999 99999998763
No 337
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.31 E-value=0.084 Score=52.51 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=52.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCCEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVi 204 (458)
.+++.|+|+|..|.+++..|++.|. .+|++++|+.++++++.+.- +..+ +.. .+...+ +..+.+..+|+||
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~-~~~~-~~~----~~~~~~~~~~~~~~~~~divI 199 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVI-NNAV-GRE----AVVGVDARGIEDVIAAADGVV 199 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHH-hhcc-Ccc----eEEecCHhHHHHHHhhcCEEE
Confidence 4689999999999999999999883 47999999999988886541 1000 000 011111 1123346789999
Q ss_pred EcCcc
Q 012720 205 HAMPV 209 (458)
Q Consensus 205 laVp~ 209 (458)
=|+|.
T Consensus 200 NaTp~ 204 (283)
T PRK14027 200 NATPM 204 (283)
T ss_pred EcCCC
Confidence 99884
No 338
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.30 E-value=0.046 Score=54.23 Aligned_cols=72 Identities=25% Similarity=0.298 Sum_probs=55.9
Q ss_pred CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++++|||-|. +|.++|..|.+.| ..|+++.... .++.+.+++||+||.
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRN--ATVSVCHVFT----------------------------DDLKKYTLDADILVV 213 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC--CEEEEEeccC----------------------------CCHHHHHhhCCEEEE
Confidence 67999999988 9999999999988 8999887422 155666789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-... + -..++++|++||++.
T Consensus 214 AvG~p~~---i--~~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKHL---I--KADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCccc---c--CHHHcCCCcEEEEec
Confidence 7764321 1 134678899999875
No 339
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.24 E-value=0.05 Score=60.48 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+.+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4679999999999999999999999 9999999864
No 340
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.23 E-value=0.06 Score=53.19 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=53.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHh---hcCCCCEE
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKT---ALLGADYC 203 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~e---a~~~aDiV 203 (458)
.||+|||.|.+-...-....+.|.+..|..+|++++..+..++-- . ....+..++.+ +.|..+ -++++|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv-~----~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLV-A----SDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHH-H-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-h----hcccccCCeEEEecchhccccccccCCEE
Confidence 489999999998864444444442257889999998655433210 0 00011122333 223322 25689999
Q ss_pred EEcCccc----cHHHHHHhhhhcCCCCCeEEEe-ccCC
Q 012720 204 LHAMPVQ----FSSSFLEGISDYVDPGLPFISL-SKGL 236 (458)
Q Consensus 204 ilaVp~~----~v~~vl~~i~~~l~~~~ivV~~-snGi 236 (458)
+++--.. ...++++.+.+++++|+.|+.= .+|+
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL 234 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh
Confidence 9987755 7899999999999999977653 4443
No 341
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.23 E-value=0.04 Score=53.62 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=30.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 4799999999999999999999995 4788888764
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.19 E-value=0.079 Score=56.51 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.++|.|||+|..|..+|..|++.| ++|+++++.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 468999999999999999999999 9999999654
No 343
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.17 E-value=0.11 Score=52.44 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCC--CCCCCceEEeCCHHhhcCCCCE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPE--QKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~-V~v~~r~~~~~e~l~~~g~~~~~~~~--~~l~~~i~a~~~~~ea~~~aDi 202 (458)
++||+|+|+ |.+|..|...|.+..+.++ +.++...+.. |.....+.+ ...+..+ .+.. ..+++|+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSa-------G~~~~~f~~~~~~v~~~~---~~~~-~~~~~Di 69 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSA-------GKKYIEFGGKSIGVPEDA---ADEF-VFSDVDI 69 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccccc-------CCccccccCccccCcccc---cccc-ccccCCE
Confidence 479999996 9999999999999654444 4555544322 221011111 1111111 1222 2568999
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn 234 (458)
+|.|.+....+++...+.+ .|.+||+.+.
T Consensus 70 vf~~ag~~~s~~~~p~~~~---~G~~VIdnsS 98 (334)
T COG0136 70 VFFAAGGSVSKEVEPKAAE---AGCVVIDNSS 98 (334)
T ss_pred EEEeCchHHHHHHHHHHHH---cCCEEEeCCc
Confidence 9999998777777766654 5788988774
No 344
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.13 E-value=0.073 Score=56.81 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=33.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ 166 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e 166 (458)
++||.|+|+|..|.++|..|.+.| ++|+++|++.....
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~ 52 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG--CDVVVADDNETARH 52 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC--CEEEEECCChHHHH
Confidence 568999999999999999999999 89999998765443
No 345
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.057 Score=53.59 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+.++.||+||.
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~--atVt~chs~t----------------------------~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNEN--ATVTYCHSKT----------------------------KNLAELTKQADILIV 207 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC--CEEEEEeCCc----------------------------hhHHHHHHhCCEEEE
Confidence 67999999 5889999999999988 8999875322 156677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ +. ..++++|++||++.
T Consensus 208 AvG~p~~---i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPKL---IT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCCc---CC--HHHcCCCCEEEEee
Confidence 9985542 11 35668899999875
No 346
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.13 E-value=0.099 Score=53.55 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=57.3
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-CCCccCCCCCCCCceEEeCCHHhhc--CCCCEEEE
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-CNCRYFPEQKLPENVIATTDAKTAL--LGADYCLH 205 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-~~~~~~~~~~l~~~i~a~~~~~ea~--~~aDiVil 205 (458)
++.|+|+|.+|...+..+...|. .+|++.|+++++++..++.+ ......+... .......+.. .++|++|.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-----~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGADVVVNPSED-----DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCeEeecCccc-----cHHHHHHHHhCCCCCCEEEE
Confidence 79999999999988777776673 68888899999888776633 2111110000 0000011222 35999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~ 232 (458)
|+... ..+.+....++++-.++.+
T Consensus 245 ~~G~~---~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 245 AVGSP---PALDQALEALRPGGTVVVV 268 (350)
T ss_pred CCCCH---HHHHHHHHHhcCCCEEEEE
Confidence 99933 3444555555555554433
No 347
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.12 E-value=0.025 Score=58.40 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=33.5
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|+..++|.|||+|..|.++|..|+++| ++|++++|.++
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAE 38 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcc
Confidence 334578999999999999999999999 99999998753
No 348
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.10 E-value=0.22 Score=49.74 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=67.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCe-EEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--
Q 012720 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-- 199 (458)
Q Consensus 126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~-V~v~~r~--~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~-- 199 (458)
+..||.|.|. |.+|..+..+|.+.| ++ |..+++. .+. + .++.+..+++|+-+.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g--~~~v~pVnp~~~~~~---v----------------~G~~~y~sv~dlp~~~~ 65 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYG--TNIVGGVTPGKGGTT---V----------------LGLPVFNTVAEAVEATG 65 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCC--CCEEEEECCCCCCCe---E----------------eCeeccCCHHHHhhccC
Confidence 3568999996 999999999999887 55 3344544 211 1 134556688886555
Q ss_pred CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 012720 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (458)
Q Consensus 200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~ 250 (458)
.|+.+++||...+.++++++... .- ..+|.++.|+..+..+.+.+..++
T Consensus 66 ~DlAvi~vp~~~v~~~l~e~~~~-gv-k~avI~s~Gf~~~~~~~l~~~a~~ 114 (291)
T PRK05678 66 ANASVIYVPPPFAADAILEAIDA-GI-DLIVCITEGIPVLDMLEVKAYLER 114 (291)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHH
Confidence 89999999999999999887652 11 233445668764322234444433
No 349
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.07 E-value=0.11 Score=43.67 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHH-HH
Q 012720 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS-FL 216 (458)
Q Consensus 138 mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~-vl 216 (458)
-+..++..|.+.| .+|.++|..-....... .+. ..++...++++++++++|+||++++...... -.
T Consensus 18 p~~~l~~~L~~~g--~~V~~~DP~v~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEELKERG--AEVSVYDPYVDEEEIKE-LGK----------LEGVEVCDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp HHHHHHHHHHHTT---EEEEE-TTSHHHHHHH-HCH----------HHCEEEESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred HHHHHHHHHHHCC--CEEEEECCccChHHHHh-hCC----------ccceEEecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 4567899999999 99999998754332222 110 0135677789999999999999999766554 34
Q ss_pred HhhhhcCCCCCeEEEecc
Q 012720 217 EGISDYVDPGLPFISLSK 234 (458)
Q Consensus 217 ~~i~~~l~~~~ivV~~sn 234 (458)
+++...+.++.+|+++-+
T Consensus 85 ~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp HHHHHHSCSSEEEEESSS
T ss_pred HHHHHhcCCCCEEEECcc
Confidence 556666767888888764
No 350
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.06 E-value=0.029 Score=58.25 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=31.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|+|+|||+|.+|+..|..|+++| ++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 58999999999999999999999 99999999753
No 351
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.06 E-value=0.041 Score=58.37 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
.++|+|||+|.-|.+.|..|+++| |+|+++.+.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~ 157 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVAL 157 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCC
Confidence 489999999999999999999999 99999988763
No 352
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.04 E-value=0.089 Score=52.03 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=49.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (458)
+++.|+|+|..+.+++..|++.|. .+|++++|+.++++.+.+.- .. ....+.. ...+|+||-|+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~-~~------------~~~~~~~--~~~~dlvINaT 186 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELY-GY------------EWRPDLG--GIEADILVNVT 186 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHh-CC------------cchhhcc--cccCCEEEECC
Confidence 589999999999999999999882 36999999999888887631 10 0000111 24589999999
Q ss_pred cc
Q 012720 208 PV 209 (458)
Q Consensus 208 p~ 209 (458)
|.
T Consensus 187 p~ 188 (272)
T PRK12550 187 PI 188 (272)
T ss_pred cc
Confidence 84
No 353
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.04 E-value=0.036 Score=48.54 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=30.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.+||+|+|+|.+|+.+|..|++.|. -+++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 4689999999999999999999994 4799999875
No 354
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.03 E-value=0.053 Score=53.66 Aligned_cols=72 Identities=24% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||-+ .+|.++|..|.++| ..|+++.... .++.+.++.||+||.
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~--AtVti~hs~T----------------------------~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNAN--ATVDICHIFT----------------------------KDLKAHTKKADIVIV 206 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEEE
Confidence 6799999987 99999999999988 8998764321 145667889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-..+ + -..++++|++||++.
T Consensus 207 AvGkp~~---i--~~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPNL---I--TEDMVKEGAIVIDIG 229 (281)
T ss_pred ecCcccc---c--CHHHcCCCcEEEEee
Confidence 9985432 1 135678899999875
No 355
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.02 E-value=0.068 Score=54.36 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=32.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
.+||.|||+|-||...+..|.++|. .+|++.+|+.+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGY-SRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence 4799999999999999999999983 47999999974
No 356
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.99 E-value=0.076 Score=56.60 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+.+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCC
Confidence 3579999999999999999999999 9999998764
No 357
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.98 E-value=0.057 Score=53.65 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=56.3
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||.
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~--aTVtichs~T----------------------------~~l~~~~~~ADIvIs 204 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLRED--ATVTLAHSKT----------------------------QDLPAVTRRADVLVV 204 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 57999999 5789999999999888 8999775432 156677889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+- -..++++|++||++.
T Consensus 205 AvGkp~~i-----~~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPHLI-----TPEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcCcc-----CHHHcCCCCEEEEcc
Confidence 99854321 145678999999875
No 358
>PRK06847 hypothetical protein; Provisional
Probab=94.94 E-value=0.029 Score=57.38 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=33.7
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|.++++|+|||+|.-|.++|..|++.| ++|+++++.++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 445678999999999999999999999 99999998753
No 359
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.8 Score=43.87 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=54.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+.++|||.|..|.+...+..+.+ +... +..|++++++.+.+... .| .. |.+...+-.+++|+
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~--~~cs~i~srS~~~a~~LaE~~~---------a~-p~----d~~~~ael~~~vfv 73 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVV--VACSAISSRSRDRAQNLAETYV---------AP-PL----DVAKSAELLLLVFV 73 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchh--eeehhhhhcCHHHHhhchhccC---------CC-cc----chhhChhhhceEEe
Confidence 478999999999998555554444 3433 33577776665544211 00 01 22222234578888
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
-+|......+... ....+|++|+.|+ |...
T Consensus 74 ~vpd~~~s~vaa~--~~~rpg~iv~HcS-ga~~ 103 (289)
T COG5495 74 DVPDALYSGVAAT--SLNRPGTIVAHCS-GANG 103 (289)
T ss_pred cchHHHHHHHHHh--cccCCCeEEEEcc-CCCc
Confidence 8887644443322 2345899999998 5543
No 360
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.81 E-value=0.068 Score=54.12 Aligned_cols=94 Identities=17% Similarity=0.120 Sum_probs=66.7
Q ss_pred cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720 120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (458)
Q Consensus 120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (458)
.+++|...+++.|.|.|-.|..+|.+|...| .+|+++..++-.+-+..=.| .++. ..+++.+.
T Consensus 202 aTn~liaGK~vVV~GYG~vGrG~A~~~rg~G--A~ViVtEvDPI~AleA~MdG--------------f~V~-~m~~Aa~~ 264 (420)
T COG0499 202 ATNVLLAGKNVVVAGYGWVGRGIAMRLRGMG--ARVIVTEVDPIRALEAAMDG--------------FRVM-TMEEAAKT 264 (420)
T ss_pred hhceeecCceEEEecccccchHHHHHhhcCC--CeEEEEecCchHHHHHhhcC--------------cEEE-EhHHhhhc
Confidence 4677777899999999999999999999888 99999999875432222223 2333 46778899
Q ss_pred CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~ 232 (458)
+|++|.|+-...+.. .+-...++++.++.+.
T Consensus 265 gDifiT~TGnkdVi~--~eh~~~MkDgaIl~N~ 295 (420)
T COG0499 265 GDIFVTATGNKDVIR--KEHFEKMKDGAILANA 295 (420)
T ss_pred CCEEEEccCCcCccC--HHHHHhccCCeEEecc
Confidence 999999998655321 1223446777666543
No 361
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.23 Score=48.61 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=37.5
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
+.+++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 2 ~~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 2 SSMKTWLITGVSSGFGRALAQAALAAG--HRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCCCEEEEecCCChHHHHHHHHHHhCc--CEEEEEeCCHHHHHHHHh
Confidence 34578999996 999999999999999 999999999877665544
No 362
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.77 E-value=0.069 Score=53.29 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=56.1
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+.| ..|+++.... .++++.+++||+||.
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvIs 207 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAAN--ATVTIAHSRT----------------------------QDLASITREADILVA 207 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 57999999 5789999999999988 8998874321 156677889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-..+ +. ..++++|++||++.
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 208 AAGRPNL---IG--AEMVKPGAVVVDVG 230 (297)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985432 11 35678899999875
No 363
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.77 E-value=0.19 Score=56.10 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=68.4
Q ss_pred EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC---CCCEEEEECcc-----cHH-HHhc
Q 012720 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP---RQPFIALSGPS-----FAL-ELMN 273 (458)
Q Consensus 203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~---~~~~~vl~gP~-----~a~-ei~~ 273 (458)
||+|+|...+.++++++.++++++++|.++.. += ..+.+.+.+.++.. +++...+.|+. .+. +..+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-vK----~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-TK----SDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV 75 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-cc----HHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence 68999999999999999999999999998862 21 22333444443321 11111233332 222 3345
Q ss_pred cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (458)
Q Consensus 274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~ 315 (458)
|....++... .+.+.++.+++++...|.++...+.-..++..
T Consensus 76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~ 118 (673)
T PRK11861 76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVF 118 (673)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence 5554443332 35778899999999999888877655555543
No 364
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.07 Score=52.86 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=55.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+.| ..|+++.... .++.+.++.||+||.
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHD--ATVTIAHSKT----------------------------RNLKQLTKEADILVV 205 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEEE
Confidence 57999999 5789999999999988 8999874321 156667789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-..+ +. ..++++|++||++.
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEee
Confidence 9985443 11 35678899999875
No 365
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.75 E-value=0.2 Score=49.92 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CC
Q 012720 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (458)
Q Consensus 126 ~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD 201 (458)
+..||.|.| .|.+|..+-.+|...| ++ .++..++.+ .+.+ .++.+..+.+|+-+. .|
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g--~~-~v~~V~p~~~~~~v----------------~G~~~y~sv~dlp~~~~~D 65 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYG--TN-IVGGVTPGKGGTTV----------------LGLPVFDSVKEAVEETGAN 65 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCC--CC-EEEEECCCCCccee----------------cCeeccCCHHHHhhccCCC
Confidence 456899999 5999999999999888 66 555554421 0111 134566678776554 79
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~ 238 (458)
++++++|...+.++++++... .-+ .+|-++.|+..
T Consensus 66 lavi~vpa~~v~~~l~e~~~~-Gvk-~avIis~Gf~e 100 (286)
T TIGR01019 66 ASVIFVPAPFAADAIFEAIDA-GIE-LIVCITEGIPV 100 (286)
T ss_pred EEEEecCHHHHHHHHHHHHHC-CCC-EEEEECCCCCH
Confidence 999999999999999887652 112 34446668754
No 366
>PLN02427 UDP-apiose/xylose synthase
Probab=94.74 E-value=0.055 Score=55.85 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDiV 203 (458)
.|||.|.|+ |-+|+.++..|.++ | ++|++++|+.+..+.+...+.. ...+..++ ..++.-..+..++++++|+|
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g--~~V~~l~r~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETP--HKVLALDVYNDKIKHLLEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCC--CEEEEEecCchhhhhhhccccc-cCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 579999995 99999999999987 5 8999999887665544332110 00000100 00111011334567789999
Q ss_pred EEcC
Q 012720 204 LHAM 207 (458)
Q Consensus 204 ilaV 207 (458)
|.+.
T Consensus 91 iHlA 94 (386)
T PLN02427 91 INLA 94 (386)
T ss_pred EEcc
Confidence 9876
No 367
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.074 Score=52.58 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++++||| ...+|.++|..|.++| ..|+++.... .++.+..++||+||.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~--AtVt~chs~T----------------------------~~l~~~~~~ADIvIs 207 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNEN--ATVTICHSKT----------------------------KNLKEVCKKADILVV 207 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 67999999 5789999999999988 8999886431 156677789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ + -..++++|++||++.
T Consensus 208 AvGkp~~---i--~~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPKF---I--DEEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcCc---c--CHHHcCCCcEEEEee
Confidence 9985443 1 135678899999874
No 368
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.69 E-value=0.21 Score=47.76 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=36.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
..++|.|.|+ |.+|..++..|+++| ++|.+++|+++..+.+..
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~ 46 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG--AKVVIADLNDEAAAAAAE 46 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence 4578999994 999999999999999 999999999877665543
No 369
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.67 E-value=0.24 Score=47.10 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=35.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAG--WDLALVARSQDALEALAA 48 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 567999996 999999999999999 899999999876655543
No 370
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.66 E-value=0.069 Score=53.84 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=52.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH---HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV---CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~---~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (458)
+|+|+|-|+ |.+|+.+...|.++| |.|....|+++. .+.+.+......-+ .-+...+.-..+.++++.+||.
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG--Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l--~l~~aDL~d~~sf~~ai~gcdg 81 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG--YTVRGTVRDPEDEKKTEHLRKLEGAKERL--KLFKADLLDEGSFDKAIDGCDG 81 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC--CEEEEEEcCcchhhhHHHHHhcccCcccc--eEEeccccccchHHHHHhCCCE
Confidence 589999996 999999999999999 999999999865 22333321100000 0011223334567788999999
Q ss_pred EEEcCc
Q 012720 203 CLHAMP 208 (458)
Q Consensus 203 VilaVp 208 (458)
||.+-.
T Consensus 82 VfH~As 87 (327)
T KOG1502|consen 82 VFHTAS 87 (327)
T ss_pred EEEeCc
Confidence 998543
No 371
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.65 E-value=0.094 Score=55.69 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=45.8
Q ss_pred CCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.++|.|||+|..|.+ +|+.|.+.| ++|+++|.... ..+.+.+.|... ..-.+. +.+.++|+||
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~~~~~-~~~~~~d~vv 71 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESAVTQRLLELGAII------------FIGHDA-ENIKDADVVV 71 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCChHHHHHHHCCCEE------------eCCCCH-HHCCCCCEEE
Confidence 468999999999999 799999999 99999997643 233454433211 001122 3456799998
Q ss_pred EcC
Q 012720 205 HAM 207 (458)
Q Consensus 205 laV 207 (458)
++-
T Consensus 72 ~sp 74 (461)
T PRK00421 72 YSS 74 (461)
T ss_pred ECC
Confidence 864
No 372
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.64 E-value=0.21 Score=47.15 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=35.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
+++|.|.|+ |.+|..++..|+++| ++|++++|+++..+.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG--AKVVIYDSNEEAAEALA 46 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChhHHHHHH
Confidence 468999996 999999999999999 99999999987655443
No 373
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.17 Score=53.25 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.++|.|+|+|.+|.++|..|++.| ++|+++|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCC
Confidence 468999999999999999999999 9999999764
No 374
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.079 Score=52.52 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=56.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+.+ ..|+++.... .++++..+.||+||.
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~~l~~~~~~ADIvIs 208 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMN--ATVTLCHSKT----------------------------QNLPSIVRQADIIVG 208 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 67999999 5889999999999988 8999876432 156667889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-..+ + -..++++|++||++.
T Consensus 209 AvGk~~~---i--~~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---I--KADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---c--CHHHcCCCCEEEEec
Confidence 9985443 1 145678999999875
No 375
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.58 E-value=0.078 Score=58.93 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~ 226 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANE 226 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 579999999999999999999999 9999999764
No 376
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.083 Score=52.36 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=56.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||- ..+|.++|..|.+.+ ..|+++.... .++++..+.||+||.
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~nl~~~~~~ADIvIs 206 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLIIV 206 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 679999995 788999999999888 8999776532 156667789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-..+- -..++++|++||++.
T Consensus 207 AvGkp~~i-----~~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNLL-----RSDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCcc-----CHHHcCCCCEEEEec
Confidence 99854431 135678899999875
No 377
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.55 E-value=0.1 Score=59.52 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=68.5
Q ss_pred CcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH---------
Q 012720 94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV--------- 164 (458)
Q Consensus 94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~--------- 164 (458)
.--+|.+.--+|+. -|- +-++++..+.++|+|||.|.-|.+-|..|-++| |.|++|.|....
T Consensus 1759 ksie~aiid~af~e------gwm-~p~pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygip 1829 (2142)
T KOG0399|consen 1759 KSIECAIIDKAFEE------GWM-KPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGIP 1829 (2142)
T ss_pred cchhhHHHHHHHHh------cCC-ccCCcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecCC
Confidence 34567788888877 442 225667667899999999999999999999999 999999987521
Q ss_pred ------------HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc
Q 012720 165 ------------CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ 210 (458)
Q Consensus 165 ------------~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~ 210 (458)
++-+.++|++ ++....+-++ -++++..+.-|.|++|+-++
T Consensus 1830 nmkldk~vv~rrv~ll~~egi~--f~tn~eigk~----vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1830 NMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGKH----VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred ccchhHHHHHHHHHHHHhhCce--EEeecccccc----ccHHHHhhccCeEEEEeCCC
Confidence 1122223321 1111111111 25677778899999988653
No 378
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.54 E-value=0.27 Score=48.85 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=36.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..+|..|++.| ++|++.+|+.+..+.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG--ATVVAVARREDLLDAVAD 82 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 368999996 999999999999999 999999999877666544
No 379
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.53 E-value=0.092 Score=52.46 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=56.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||- ..+|.++|..|.+.| ..|+++.... .++++.+++||+||.
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~--ATVtvchs~T----------------------------~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKAD--ATVTVVHSRT----------------------------PDPESIVREADIVIA 216 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 689999995 788999999999988 8999885421 156677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-.. ++. ..++++|++||++.
T Consensus 217 AvGk~~---~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQAM---MIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCcC---ccC--HHHcCCCCEEEEee
Confidence 997532 111 35688999999875
No 380
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.084 Score=52.33 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=56.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++++|||- ..+|.++|..|.+.+ ..|+++.... .++.+.++.||+||.
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNEN--ATVTIAHSRT----------------------------KDLPQVAKEADILVV 206 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 679999995 778999999999988 8999874321 156677889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ + -..++++|++||++.
T Consensus 207 AvG~~~~---i--~~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAKF---V--KKDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcCc---c--CHHHcCCCCEEEEcc
Confidence 9985442 1 135678899999875
No 381
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.50 E-value=0.092 Score=52.05 Aligned_cols=72 Identities=25% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+|||- ..+|.++|..|.+.+ ..|+++.... .|+.+..+.||+||.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~--ATVt~chs~T----------------------------~dl~~~~k~ADIvIs 207 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILIV 207 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHhhhcCEEEE
Confidence 679999994 789999999999988 8999875432 155566789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ +. ..++++|++||++.
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9985443 11 35678899999875
No 382
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.49 E-value=0.32 Score=46.63 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=35.6
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
|+|.|+|+ |.+|..++..|++.| ++|++.+|+++.++.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG--HKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 68999995 999999999999999 999999999877665543
No 383
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.47 E-value=0.16 Score=48.58 Aligned_cols=94 Identities=12% Similarity=-0.035 Sum_probs=57.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH----------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP----------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~----------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (458)
.++|+|.|.|++|..+|..|.+.| . .|.+.|.+. +.++..++.+....+ +. .... +.++
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G--~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~-~~------~~~~-~~~~ 92 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEG--GKVLAVSDPDGYIYDPGITTEELINYAVALGGSARV-KV------QDYF-PGEA 92 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcccc-Cc------cccc-Cccc
Confidence 579999999999999999999998 5 555678777 655555544321111 11 1111 1122
Q ss_pred h-cCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccC
Q 012720 196 A-LLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 196 a-~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
. -.+||++|-|..... ..+....+ + -.+|+--.|+
T Consensus 93 l~~~~~DVlipaA~~~~i~~~~a~~l----~-a~~V~e~AN~ 129 (217)
T cd05211 93 ILGLDVDIFAPCALGNVIDLENAKKL----K-AKVVAEGANN 129 (217)
T ss_pred ceeccccEEeeccccCccChhhHhhc----C-ccEEEeCCCC
Confidence 2 137999999998654 23333333 2 3466666664
No 384
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.47 E-value=0.13 Score=53.70 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=54.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCceEE------
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPENVIA------ 189 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~----------~l~~~i~a------ 189 (458)
..||.|||+|.+|+.+|..|+.+|. -+++++|.+.=....+.++-+ .....+.. .+.+.+++
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence 4689999999999999999999995 478888876422222221100 00000000 01111111
Q ss_pred -e-CCHHhhcCCCCEEEEcCccccHHHHHHhhh
Q 012720 190 -T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (458)
Q Consensus 190 -~-~~~~ea~~~aDiVilaVp~~~v~~vl~~i~ 220 (458)
. .+..+.++++|+||.|+-....+..+.++.
T Consensus 121 i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 121 LDPSNAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred CChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 1 123456788999999987766666666653
No 385
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.24 Score=46.85 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=35.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
++|.|+|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG--YKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC--CEEEEeeCCHHHHHHHHH
Confidence 67999996 999999999999998 899999999876655543
No 386
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.44 E-value=0.14 Score=55.57 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~ 171 (458)
.+++.|+|+|.+|.+++..|++.| .+|++++|+.++++.+.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G--~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKG--ARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence 468999999999999999999999 8999999999888877653
No 387
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.43 E-value=0.11 Score=59.45 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
+.+||+|||+|.-|...|..|++.| |+|++|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence 4689999999999999999999999 999999964
No 388
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.42 E-value=0.09 Score=57.05 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=36.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..++..|++.| ++|++++|+.+..+.+.+
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLG--FRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence 467999996 999999999999999 999999999887765543
No 389
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=94.37 E-value=0.048 Score=45.24 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=55.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhh
Q 012720 333 NLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVS 412 (458)
Q Consensus 333 kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~k 412 (458)
|+..|.+.++....++|+..+|+++|+|...+.+..+....+. ..-..+|.-+ .|.++ .|
T Consensus 8 K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~------~~~~~pg~g~-GG~Cl-------------pk 67 (96)
T PF00984_consen 8 KYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG------PHYLRPGPGF-GGSCL-------------PK 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT------SSS-S-SSS---SSCH-------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc------cccCCCCCCC-CCcch-------------hh
Confidence 4555677788889999999999999999776654322111000 0000111111 13444 28
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720 413 TAGAVIALAQKYNVKMPVLTAVARI 437 (458)
Q Consensus 413 d~g~v~~lA~~~gv~~P~~~~v~~l 437 (458)
|...++..++++|.+.++++.+.+.
T Consensus 68 D~~~L~~~~~~~g~~~~ll~~~~~~ 92 (96)
T PF00984_consen 68 DPYALIYLAKELGYPPQLLEAVINI 92 (96)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 8899999999999999998887764
No 390
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.36 E-value=0.2 Score=48.26 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=57.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeC----------CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMR----------DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r----------~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (458)
.++|+|.|.|++|..+|..|.+.| ..|+ +.|. +.+.+.++++....... ++. .... +.++
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g--~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~-----~~~-~~~~-~~~~ 101 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAG--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG-----FPG-AERI-TNEE 101 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc-----CCC-ceec-CCcc
Confidence 589999999999999999999998 8888 5566 55555544443211111 111 1111 1222
Q ss_pred h-cCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccC
Q 012720 196 A-LLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG 235 (458)
Q Consensus 196 a-~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snG 235 (458)
. -.+||+++-|.+... ..+.+..+. -.+|+--.|+
T Consensus 102 i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~ 138 (227)
T cd01076 102 LLELDCDILIPAALENQITADNADRIK-----AKIIVEAANG 138 (227)
T ss_pred ceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCCC
Confidence 2 237899999987644 444444432 2356666654
No 391
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.35 E-value=0.054 Score=55.47 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=32.7
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+.+++|+|||+|.+|...|..|+++| ++|+++++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCc
Confidence 34679999999999999999999999 8999999776
No 392
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.1 Score=52.08 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=56.3
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+.+++||+||.
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~~--aTVt~chs~T----------------------------~~l~~~~~~ADIvVs 209 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGEN--CTVTTVHSAT----------------------------RDLADYCSKADILVA 209 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 67999999 5789999999999988 8999876532 156677889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++....+ + -..++++|++||++.
T Consensus 210 AvGkp~~---i--~~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---V--KYSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---c--CHHHcCCCCEEEEec
Confidence 9985443 1 135677899999874
No 393
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.33 E-value=0.054 Score=56.21 Aligned_cols=48 Identities=31% Similarity=0.554 Sum_probs=37.4
Q ss_pred ccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhc-CCCC-eEEEEeCCH
Q 012720 109 VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDP 162 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~a-G~~~-~V~v~~r~~ 162 (458)
+-|++.|+..+.. +.-.|.|||+|.+|+++|..|++. | . +|+++++..
T Consensus 16 ~~~~~~~~~~~~~----~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~ 65 (407)
T TIGR01373 16 RGWKPAWRSPEPK----PTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGW 65 (407)
T ss_pred CCCCcccCCCCCC----ccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEccc
Confidence 3488888875211 123699999999999999999985 7 5 899999864
No 394
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.30 E-value=0.32 Score=46.95 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=35.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
|+|.|.|+ |.+|..+|..|+++| ++|++.+|+++..+.+.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~ 42 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALK 42 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 58999996 889999999999999 999999999876655543
No 395
>PRK07236 hypothetical protein; Provisional
Probab=94.30 E-value=0.054 Score=55.88 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..++|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 3479999999999999999999999 9999999875
No 396
>PRK06753 hypothetical protein; Provisional
Probab=94.30 E-value=0.051 Score=55.56 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|+|.|||+|..|.++|..|+++| ++|+++.+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 68999999999999999999999 99999998864
No 397
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.29 E-value=0.034 Score=55.34 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=47.0
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (458)
|||.|.|+ |.+|..++..|++.| ++|++++|+++....+...+. .+. ...+.-.++++++++++|+||.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~~~~~l~~~~~~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG--EEVRVLVRPTSDRRNLEGLDV--EIV-----EGDLRDPASLRKAVAGCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC--CEEEEEEecCccccccccCCc--eEE-----EeeCCCHHHHHHHHhCCCEEEEe
Confidence 58999995 999999999999999 999999998754332221111 000 00011012344567789999887
Q ss_pred Cc
Q 012720 207 MP 208 (458)
Q Consensus 207 Vp 208 (458)
..
T Consensus 72 a~ 73 (328)
T TIGR03466 72 AA 73 (328)
T ss_pred ce
Confidence 64
No 398
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.27 E-value=0.14 Score=54.98 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.++|.|+|.|..|.++|+.|.+.| ++|+++|.... ..+.+.+.+.... +..-....+.+.++|+||
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~~~~L~~~~~~~~----------~~~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPNLAALRAELPDAE----------FVGGPFDPALLDGVDLVA 74 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchhHHHHHhhcCCcE----------EEeCCCchhHhcCCCEEE
Confidence 468999999999999999999999 99999996542 2334544322111 111111223456889999
Q ss_pred Ec
Q 012720 205 HA 206 (458)
Q Consensus 205 la 206 (458)
.+
T Consensus 75 ~s 76 (498)
T PRK02006 75 LS 76 (498)
T ss_pred EC
Confidence 86
No 399
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.27 E-value=0.11 Score=54.97 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g 172 (458)
.+||.|||.|..|.+.|..|.+.| ++|+++|+.......+.+.|
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~l~~~g 52 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGG--AEVIAWDDNPASRAKAAAAG 52 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEECCChhhHHHHHhcC
Confidence 468999999999999999999999 99999998755444444434
No 400
>PRK09186 flagellin modification protein A; Provisional
Probab=94.26 E-value=0.31 Score=46.66 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=37.2
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
...++|.|.|+ |.+|..+|..|++.| ++|++.+|+++.++.+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~ 46 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAG--GIVIAADIDKEALNELLE 46 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecChHHHHHHHH
Confidence 34578999996 899999999999999 999999999877665543
No 401
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.26 E-value=0.095 Score=53.19 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=56.1
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+++ ..|+++.... .++++..+.||+||.
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~--ATVTicHs~T----------------------------~nl~~~~~~ADIvIs 263 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHD--ATVSTVHAFT----------------------------KDPEQITRKADIVIA 263 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHHhhCCEEEE
Confidence 67999999 5788999999999988 8998875432 155677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-..+ + -..++++|++||++.
T Consensus 264 AvGkp~~---v--~~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPNL---V--RGSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcCc---c--CHHHcCCCCEEEEcc
Confidence 9985442 1 135678899999875
No 402
>PRK07877 hypothetical protein; Provisional
Probab=94.25 E-value=0.09 Score=58.75 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=55.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCC----------CCCC--ceEEe----
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQ----------KLPE--NVIAT---- 190 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~----------~l~~--~i~a~---- 190 (458)
..||+|+|+| +|+..|..|+++|.--+++++|.+.=....++........++.. .+.+ .|.+.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 5789999999 99999999999982026777776642222222210000000000 0011 12211
Q ss_pred --CCHHhhcCCCCEEEEcCccccHHHHHHhh
Q 012720 191 --TDAKTALLGADYCLHAMPVQFSSSFLEGI 219 (458)
Q Consensus 191 --~~~~ea~~~aDiVilaVp~~~v~~vl~~i 219 (458)
++.++.++++|+||-|+-....+-++.+.
T Consensus 186 ~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 186 TEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred CHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 24566778999999999988777777654
No 403
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.19 E-value=0.12 Score=51.26 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=56.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 126 ~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
..++|+||| ...+|.++|..|.+++ ..|+++.... .++++..+.||+||
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~--AtVtichs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERH--ATVTIAHSRT----------------------------ADLAGEVGRADILV 205 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5789999999999988 8899874321 15666778999999
Q ss_pred EcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
.++.-..+ +. ..++++|++||++.
T Consensus 206 ~AvGk~~~---i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 206 AAIGKAEL---VK--GAWVKEGAVVIDVG 229 (282)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEee
Confidence 99985332 11 35678899999875
No 404
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.19 E-value=0.096 Score=53.43 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=56.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++|+||| ...+|.++|..|.+++ ..|+++.... .++.+.++.||+||.
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~--ATVTicHs~T----------------------------~nl~~~~r~ADIVIs 280 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT----------------------------KNPEEITREADIIIS 280 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC--CeEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 67999999 5889999999999988 8999875321 156677899999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-..+ + -..++++|++||++.
T Consensus 281 AvGkp~~---i--~~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---V--RGSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---C--CHHHcCCCCEEEecc
Confidence 9985443 1 135678999999874
No 405
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.18 E-value=0.086 Score=53.77 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCeEEEECcchHHHHHHHHHHh--------cCCCCeEE-EEeCCHHH-------HHHHHhhcCCCccCCCCCCCCceEE-
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN--------KKSQLKVY-MLMRDPAV-------CQSINEKHCNCRYFPEQKLPENVIA- 189 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~--------aG~~~~V~-v~~r~~~~-------~e~l~~~g~~~~~~~~~~l~~~i~a- 189 (458)
+++|+|+|.|++|..++..|.+ .|.+..|. +.+++... .+++.+......... .++.....
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~--~~~~~~~~~ 79 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS--NWGNDYEVY 79 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh--hcccccccc
Confidence 4799999999999999999887 34223444 33543211 111111000000000 01000000
Q ss_pred eCCHHhhc--CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720 190 TTDAKTAL--LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (458)
Q Consensus 190 ~~~~~ea~--~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi 236 (458)
..+.++.+ .++|+||-++......+++.. .+..|..||...+|.
T Consensus 80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~G~~VVtanK~~ 125 (336)
T PRK08374 80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKEGKSVVTSNKPP 125 (336)
T ss_pred CCCHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhhCCcEEECCHHH
Confidence 11556655 479999999976655555444 445688888888773
No 406
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.17 E-value=0.074 Score=41.01 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=27.1
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 132 IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|||+|.-|.+.|..|+++| ++|+++++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcc
Confidence 8999999999999999998 99999998863
No 407
>PLN03075 nicotianamine synthase; Provisional
Probab=94.17 E-value=0.49 Score=47.29 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhh---cCCCC
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTA---LLGAD 201 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea---~~~aD 201 (458)
...+|+.||+|..|..-...++....+..++.+|.+++..+..++.-.. ...+..++++. .|..+. ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-----~~gL~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-----DPDLSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-----ccCccCCcEEEECchhhcccccCCcC
Confidence 4578999999999876554444443224799999999877655543211 00111223321 232221 36899
Q ss_pred EEEEcCc----cccHHHHHHhhhhcCCCCCeEEEec
Q 012720 202 YCLHAMP----VQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 202 iVilaVp----~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+|++.+= ...-..+++.+.+.+++|.+++.-+
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999852 1456778899999999998776543
No 408
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.16 E-value=0.12 Score=51.43 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=55.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.++++|||- ..+|.++|..|.+.+ ..|+++.... .++.+.++.||+||.
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~--ATVtichs~T----------------------------~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKEN--CSVTICHSKT----------------------------HNLSSITSKADIVVA 208 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence 679999995 788999999999888 8999775321 156667889999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++.-... + -..++++|++||++.
T Consensus 209 AvGkp~~---i--~~~~vk~GavVIDvG 231 (288)
T PRK14171 209 AIGSPLK---L--TAEYFNPESIVIDVG 231 (288)
T ss_pred ccCCCCc---c--CHHHcCCCCEEEEee
Confidence 9985431 1 135678899999875
No 409
>PRK05868 hypothetical protein; Validated
Probab=94.16 E-value=0.054 Score=55.84 Aligned_cols=35 Identities=34% Similarity=0.418 Sum_probs=32.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|++|.|||+|..|.++|..|+++| ++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence 578999999999999999999999 99999998754
No 410
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.15 E-value=0.11 Score=56.58 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
..++|+|||+|..|...|..|++.| ++|+++++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence 3579999999999999999999999 999999864
No 411
>PRK07411 hypothetical protein; Validated
Probab=94.12 E-value=0.15 Score=53.04 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=55.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCc--eEE----
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPEN--VIA---- 189 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~----------~l~~~--i~a---- 189 (458)
..||.|||+|.+|+.+|..|+.+|. -.++++|.+.=....+.++-+ +....+.. .+.+. +.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 5689999999999999999999995 478888876422222222100 00000000 00111 111
Q ss_pred -e-CCHHhhcCCCCEEEEcCccccHHHHHHhhh
Q 012720 190 -T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (458)
Q Consensus 190 -~-~~~~ea~~~aDiVilaVp~~~v~~vl~~i~ 220 (458)
+ .+..+.+.++|+||.|+-....+.++.++.
T Consensus 117 ~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 117 LSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred cCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1 123456788999999988777776666653
No 412
>PRK06182 short chain dehydrogenase; Validated
Probab=94.12 E-value=0.1 Score=50.78 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=35.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
+++|.|.|+ |.+|..++..|++.| ++|++.+|+.+.++.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG--YTVYGAARRVDKMEDLA 44 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 578999996 999999999999999 99999999987765554
No 413
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.11 Score=51.45 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=55.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHh--cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVAN--KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~--aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
.++++||| .+.+|.++|..|.+ ++ ..|+++.... .++++.++.||+|
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~--atVtvchs~T----------------------------~~l~~~~k~ADIv 207 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSEN--ATVTLCHTGT----------------------------RDLAAHTRRADII 207 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCC--CEEEEeCCCC----------------------------CCHHHHHHhCCEE
Confidence 67999999 57899999999998 55 7888875431 1566778999999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|.++....+ +. ..++++|++||++.
T Consensus 208 V~AvGkp~~---i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAHL---VT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 999985432 11 35678999999875
No 414
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.13 Score=50.50 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=36.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
+++|.|.|+ |.+|..+|..|++.| ++|++.+|+++..+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG--WRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 457999997 999999999999999 999999999887766654
No 415
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.02 E-value=0.15 Score=58.08 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=47.8
Q ss_pred hcCCCeEEEECcchHHHHH-HHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 124 LERTNKVVVLGGGSFGTAM-AAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~i-A~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
|+++++|.|||.|..|.+. |+.|.+.| ++|+++|.++ ...+.+.+.|.. + ..-.+. +.+.++|
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G--~~V~~sD~~~~~~~~~L~~~gi~--~----------~~g~~~-~~~~~~d 65 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG--YSVSGSDLSEGKTVEKLKAKGAR--F----------FLGHQE-EHVPEDA 65 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC--CeEEEECCCCChHHHHHHHCCCE--E----------eCCCCH-HHcCCCC
Confidence 5666789999999999997 99999999 9999999754 233445544421 1 001122 3456789
Q ss_pred EEEEcC
Q 012720 202 YCLHAM 207 (458)
Q Consensus 202 iVilaV 207 (458)
+||.+-
T Consensus 66 ~vV~Sp 71 (809)
T PRK14573 66 VVVYSS 71 (809)
T ss_pred EEEECC
Confidence 988753
No 416
>PLN02214 cinnamoyl-CoA reductase
Probab=93.97 E-value=0.11 Score=52.72 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHhh-cC--CCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEK-HC--NCRYFPEQKLPENVIATTDAKTALLGA 200 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~--l~~~-g~--~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (458)
+|+|.|.|+ |.+|+.++..|.++| ++|++++|+.+.... +... +. ...+. ...+.-..+.+++++++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~~~~ 82 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGGKERLILC-----KADLQDYEALKAAIDGC 82 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCCCCcEEEE-----ecCcCChHHHHHHHhcC
Confidence 578999997 999999999999999 999999997653211 1111 00 00000 01111112345667889
Q ss_pred CEEEEcCc
Q 012720 201 DYCLHAMP 208 (458)
Q Consensus 201 DiVilaVp 208 (458)
|+||.+..
T Consensus 83 d~Vih~A~ 90 (342)
T PLN02214 83 DGVFHTAS 90 (342)
T ss_pred CEEEEecC
Confidence 99998874
No 417
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.96 E-value=0.13 Score=51.21 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~ 164 (458)
.++|.|.| +|-+|+.++..|.+.| ++|++++|+.+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g--~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG--YTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence 47899999 5999999999999999 999999887643
No 418
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.95 E-value=0.36 Score=49.64 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=56.8
Q ss_pred CeEEEECc-chHHHHHHHHHH-hcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720 128 NKVVVLGG-GSFGTAMAAHVA-NKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La-~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (458)
|||+|+|+ |.+|..|-..|. +..++ .++.++...+.. |... .+.+... .+...++. +...+.|++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~-------g~~~-~f~~~~~--~v~~~~~~-~~~~~vDivf 69 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLG-------QAAP-SFGGTTG--TLQDAFDI-DALKALDIII 69 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhC-------CCcC-CCCCCcc--eEEcCccc-ccccCCCEEE
Confidence 58999997 999999999999 55533 234445443211 1111 1112111 12222222 2467899999
Q ss_pred EcCccccHHHHHHhhhhcCCCC--CeEEEecc
Q 012720 205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (458)
Q Consensus 205 laVp~~~v~~vl~~i~~~l~~~--~ivV~~sn 234 (458)
+|.+....+++...+.+ .| .+||+.+.
T Consensus 70 fa~g~~~s~~~~p~~~~---aG~~~~VIDnSS 98 (366)
T TIGR01745 70 TCQGGDYTNEIYPKLRE---SGWQGYWIDAAS 98 (366)
T ss_pred EcCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 99998877766655544 57 67888874
No 419
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.13 Score=50.99 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=55.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
.++++|||- ..+|.++|..|.+.|. +..|+++.... .++++.++.||+|
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADIv 204 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADII 204 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence 689999995 7889999999998721 17888764321 1566778999999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|.++....+ + -..++++|++||++.
T Consensus 205 V~AvG~p~~---i--~~~~ik~GavVIDvG 229 (287)
T PRK14181 205 IAAIGVPLF---I--KEEMIAEKAVIVDVG 229 (287)
T ss_pred EEccCCcCc---c--CHHHcCCCCEEEEec
Confidence 999985432 1 135678999999875
No 420
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.43 Score=45.36 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.++|.|.|+ |.+|..++..|++.| ++|.+.+|+++..+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFNDGLAAEARELA 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 478999996 999999999999999 99999999987665544
No 421
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.86 E-value=0.13 Score=59.56 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.+||+|||+|.-|.+.|..|++.| |+|++|++..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCC
Confidence 689999999999999999999999 9999999764
No 422
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.77 E-value=0.17 Score=50.53 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=54.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~----aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
.++|+|||- ..+|.++|..|.+ .+ ..|++...... ++++.++.||
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--atVt~~hs~t~----------------------------~l~~~~~~AD 208 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESN--CTVTICHSATK----------------------------DIPSYTRQAD 208 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCC--CEEEEEeCCch----------------------------hHHHHHHhCC
Confidence 679999995 7889999999987 45 78887765431 4566788999
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+||.++....+ +. ..++++|++||++.
T Consensus 209 IvI~Avg~~~l---i~--~~~vk~GavVIDVg 235 (295)
T PRK14174 209 ILIAAIGKARF---IT--ADMVKPGAVVIDVG 235 (295)
T ss_pred EEEEecCccCc---cC--HHHcCCCCEEEEee
Confidence 99999975432 11 34568899999876
No 423
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.74 E-value=0.074 Score=53.11 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=29.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
.+|+|||+|.-|+++|..|+++| ++|+++++.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence 37999999999999999999999 99999998763
No 424
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.74 E-value=0.079 Score=54.49 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc---CCCCeEEEEeCC
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRD 161 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~a---G~~~~V~v~~r~ 161 (458)
.+++|.|||+|..|.++|..|+++ | ++|+++++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 457899999999999999999998 9 999999984
No 425
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.72 E-value=0.18 Score=50.04 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=55.2
Q ss_pred CCeEEEEC-cchHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~----aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (458)
.++++||| ...+|.++|..|.+ .+ ..|+++..... ++.+.++.||
T Consensus 157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--AtVt~~hs~t~----------------------------~l~~~~~~AD 206 (286)
T PRK14184 157 GKKAVVVGRSNIVGKPLALMLGAPGKFAN--ATVTVCHSRTP----------------------------DLAEECREAD 206 (286)
T ss_pred CCEEEEECCCccchHHHHHHHhCCcccCC--CEEEEEeCCch----------------------------hHHHHHHhCC
Confidence 67999999 57899999999998 55 78888765431 5566788999
Q ss_pred EEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
+||.++....+ +. ..++++|++||++.
T Consensus 207 IVI~AvG~p~l---i~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPRF---VT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence 99999986443 11 24558899999875
No 426
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.68 E-value=0.067 Score=55.59 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=34.2
Q ss_pred hcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (458)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~ 164 (458)
+..+|||.|+|+ |.+|..++..|.++| ++|++++|+...
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G--~~V~~l~R~~~~ 96 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG--YNVVAVAREKSG 96 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEEechhh
Confidence 444689999996 999999999999999 999999998754
No 427
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.67 E-value=0.098 Score=52.26 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
+|+|||+|..|...|..|++.| ++|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec
Confidence 4899999999999999999999 999999998
No 428
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.5 Score=45.02 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=35.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG--ASVVVADINAEGAERVA 47 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 368999997 999999999999999 99999999976655543
No 429
>PLN02780 ketoreductase/ oxidoreductase
Probab=93.62 E-value=0.4 Score=48.41 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=36.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.+.+.|.|+ |.+|.++|..|+++| ++|.+++|+++..+.+.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G--~~Vil~~R~~~~l~~~~~ 95 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG--LNLVLVARNPDKLKDVSD 95 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH
Confidence 467889996 889999999999999 999999999988776654
No 430
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=93.59 E-value=0.6 Score=46.21 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=64.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATT 191 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~a----G~~-----~~V~v~~r~~~------~~e~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (458)
..||.|+|+|+-|..+|..|... |.. .+++++|+.-- .+...+..-.. . .+. .-..
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~-----~--~~~--~~~~ 95 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFAR-----K--DEE--KEGK 95 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHh-----h--cCc--ccCC
Confidence 36899999999999999999887 731 37888887620 01111110000 0 000 1124
Q ss_pred CHHhhcC--CCCEEEEcCc--cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 192 DAKTALL--GADYCLHAMP--VQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 192 ~~~ea~~--~aDiVilaVp--~~~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
++.|+++ ++|++|=+.. --..+++++.+..+.+ .-+|..++|-..
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~-~PIIFaLSNPt~ 144 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE-RPIIFALSNPTS 144 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC-CCEEEECCCcCC
Confidence 7889998 8899887663 3467888888776654 567777888554
No 431
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.59 E-value=0.44 Score=45.73 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=36.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..++..|+++| ++|.+.+|+++..+++.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG--AAVAIADLNQDGANAVAD 49 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 467999997 999999999999999 999999999876655543
No 432
>PRK07588 hypothetical protein; Provisional
Probab=93.56 E-value=0.081 Score=54.58 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|+|.|||+|..|.++|..|+++| ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 58999999999999999999999 99999997653
No 433
>PRK09242 tropinone reductase; Provisional
Probab=93.54 E-value=0.66 Score=44.57 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~ 51 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLG--ADVLIVARDADALAQARD 51 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 468999996 899999999999999 999999999877665544
No 434
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.52 Score=47.82 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=36.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..+|..|++.| ++|++.+|+++..+.+.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG--ARLVLAARDEEALQAVAE 49 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 357999997 899999999999999 999999999887766544
No 435
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.47 E-value=0.087 Score=54.21 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=30.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.+|.|||+|..|+++|..|+++| ++|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAG--ASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCC
Confidence 47999999999999999999999 9999999874
No 436
>PRK07538 hypothetical protein; Provisional
Probab=93.47 E-value=0.086 Score=54.96 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=31.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
|+|.|||+|..|.++|..|+++| ++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence 68999999999999999999999 99999998763
No 437
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.45 E-value=0.097 Score=54.18 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~a--G~~~~V~v~~r~~ 162 (458)
+..|.|||+|.+|.++|..|++. | ++|+++++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCC
Confidence 35899999999999999999998 8 9999999875
No 438
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=93.43 E-value=4.3 Score=40.08 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=91.2
Q ss_pred CceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEE
Q 012720 185 ENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS 263 (458)
Q Consensus 185 ~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~ 263 (458)
-++++++|-.|+++++|++|+.+|-- ...++++++.+++++|.+|.+.= ++.+- .+...++. +++. ++.+.+
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tC-TIpt~---~ly~ilE~-l~R~--DvgVsS 197 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHAC-TIPTT---KFAKIFED-LGRE--DLNVTS 197 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccc-cCChH---HHHHHHHh-hCcc--cCCeec
Confidence 35778877778899999999999964 47889999999999998876532 35442 33344444 3432 222221
Q ss_pred -CcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHH--HHHHHHHHHHHHHHHHhcc----c-C
Q 012720 264 -GPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS-DVTGVE--IAGALKNVLAIAAGIVVGM----N-L 334 (458)
Q Consensus 264 -gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~--~~kalkNi~ai~~G~~~~~----k-l 334 (458)
=|...-+ ..++. .+.-+-.+++..+++.++.++.+...+..+ |+.+.. .++++--+. ..|++.=. + +
T Consensus 198 ~HPaaVPg-t~~q~-Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv~--~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 198 YHPGCVPE-MKGQV-YIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAIV--YAGLLAYRDAVTKIL 273 (340)
T ss_pred cCCCCCCC-CCCce-EeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 1211111 01111 222233578999999999998877766543 333211 122211110 11322111 1 2
Q ss_pred CCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012720 335 GNN--SMAALVAQGCSEIRWLATKMGAK 360 (458)
Q Consensus 335 ~~n--~~~al~~~~l~E~~~la~a~Gi~ 360 (458)
+.. .........+.-+..+-+..|++
T Consensus 274 gAP~~miq~qa~eaL~tmasLme~~GI~ 301 (340)
T TIGR01723 274 GAPADFAQMMADEALTQIHNLMEEKGID 301 (340)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 222 22244555666677777777776
No 439
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.42 E-value=0.089 Score=54.20 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=33.9
Q ss_pred hhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 123 ILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 123 ~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.|...|||.|.|+ |.+|+.++..|.+.| ++|+.++|..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecc
Confidence 4556789999997 999999999999999 9999999864
No 440
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.41 E-value=0.16 Score=51.72 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred chhhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 121 TDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 121 ~~~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+.+..++|||.|.|+ |-+|+.++..|.+.| ++|++++|..
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~ 49 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFS 49 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 345556789999996 999999999999999 9999999854
No 441
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.40 E-value=0.098 Score=53.43 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=30.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..|.|||+|.+|+++|..|++.| ++|+++++..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CeEEEEeccc
Confidence 46999999999999999999999 9999999875
No 442
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.39 E-value=0.17 Score=49.83 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=56.4
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+++.|||.+ -+|.+||..|..++ +.|+++..... ++.+..+.||++|.
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~n--aTVtvcHs~T~----------------------------~l~~~~k~ADIvv~ 205 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNAN--ATVTVCHSRTK----------------------------DLASITKNADIVVV 205 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCC--CEEEEEcCCCC----------------------------CHHHHhhhCCEEEE
Confidence 6799999975 57999999999988 99998865431 55666789999999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++--..+-. .+++++|.+||+..
T Consensus 206 AvG~p~~i~-----~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHFIK-----ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccccc-----cccccCCCEEEecC
Confidence 998543211 56788999999874
No 443
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.39 E-value=0.63 Score=47.16 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=56.6
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
..+|.|+|+|.+|...+..+.+ .| ..+|++.++++++.+.+++.+.. + ...+..+. ..+|+||-
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~~~~~--~-----------~~~~~~~~-~g~d~viD 228 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSFADET--Y-----------LIDDIPED-LAVDHAFE 228 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhhcCce--e-----------ehhhhhhc-cCCcEEEE
Confidence 4689999999999987777665 33 16799999998887766542211 0 11111121 25899999
Q ss_pred cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 206 aVp~~~v~~vl~~i~~~l~~~~ivV~~ 232 (458)
++........+......++++..++.+
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 987432333444555566666555544
No 444
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.37 E-value=0.73 Score=46.63 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=58.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCCE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADY 202 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDi 202 (458)
..+|.|+|+|.+|......+...| . .|++.++++++.+.+++.|........ . .+..+. ....|+
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~-----~----~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQ-----N----DDLDHYKAEKGYFDV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCC-----c----ccHHHHhccCCCCCE
Confidence 468999999999998887777777 6 688899999888877776643211000 0 011121 124799
Q ss_pred EEEcCccc-cHHHHHHhhhhcCCCCCeEEEec
Q 012720 203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 203 VilaVp~~-~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
||-|+... .+...+ ..++++..++.+.
T Consensus 239 vid~~G~~~~~~~~~----~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGHPSSINTCL----EVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCCHHHHHHHH----HHhhcCCEEEEEc
Confidence 99998853 333333 3445555565553
No 445
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.37 E-value=0.17 Score=51.02 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence 68999999999999999999995 5788888765
No 446
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.36 E-value=0.096 Score=54.02 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 358999999999999999999999 9999999753
No 447
>PRK08017 oxidoreductase; Provisional
Probab=93.34 E-value=0.19 Score=48.10 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=35.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
++|.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g--~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG--YRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHhHHHH
Confidence 47999998 999999999999999 89999999987665554
No 448
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.32 E-value=0.096 Score=55.77 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=33.7
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
+...++|+|||+|.-|.+.|..|.+.| ++|+++.++..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~ 44 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQ 44 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 334579999999999999999999999 99999998764
No 449
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.65 Score=45.13 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=35.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.++|.|.|+ |.+|..++..|+++| ++|++++|+++..+.+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAG--AAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 478999996 899999999999999 99999999987655544
No 450
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.28 E-value=0.1 Score=53.94 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+.+|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCC
Confidence 458999999999999999999999 9999999864
No 451
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.28 E-value=0.59 Score=47.47 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r---~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
..+|.|+|+|.+|...+..+...| .+|++++| ++++.+.+++.|........ ..+ . +. .....+|+|
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~----~~~--~-~~-~~~~~~d~v 242 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGATYVNSSK----TPV--A-EV-KLVGEFDLI 242 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEEecCCc----cch--h-hh-hhcCCCCEE
Confidence 468999999999999888877778 78999998 56677666665542110000 000 0 01 112468999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~ 232 (458)
|-|+.... .+......++++..++.+
T Consensus 243 id~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 243 IEATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred EECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 99998542 223333445555555544
No 452
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.27 E-value=0.94 Score=48.18 Aligned_cols=73 Identities=10% Similarity=0.031 Sum_probs=49.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (458)
.+||.|||.|.++..=+..|.+.| .+|+++...- +.+..+.+.+. ..+. .-.-...+ ++++++||.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~~~-i~~~---------~~~~~~~d-l~~~~lv~~ 78 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADAGM-LTLV---------EGPFDESL-LDTCWLAIA 78 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE---------eCCCChHH-hCCCEEEEE
Confidence 579999999999999999999999 8999997652 23444444331 1110 00002233 688999999
Q ss_pred cCccccH
Q 012720 206 AMPVQFS 212 (458)
Q Consensus 206 aVp~~~v 212 (458)
|+.+..+
T Consensus 79 at~d~~~ 85 (457)
T PRK10637 79 ATDDDAV 85 (457)
T ss_pred CCCCHHH
Confidence 9987543
No 453
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.24 E-value=0.64 Score=47.14 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=36.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~ 50 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRG--AKVVLLARGEEGLEALAA 50 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 367999996 999999999999999 999999999877665543
No 454
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=93.21 E-value=0.16 Score=51.70 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=56.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC----HHHHHHHHhhcCC-CccC-----CCCCC---CCceEEe--C
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD----PAVCQSINEKHCN-CRYF-----PEQKL---PENVIAT--T 191 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~----~~~~e~l~~~g~~-~~~~-----~~~~l---~~~i~a~--~ 191 (458)
++||+|.|+|++|..+.+.|.+.+++.++.++..+ .+.+..+-+.--. -++. .+..+ -+.+.+. .
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 46999999999999999999876422355555322 2333333221100 0000 01111 1223333 2
Q ss_pred CHHhhc---CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 192 DAKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 192 ~~~ea~---~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
++++.- .++|+||.|+.....++..... +..|..+|.++
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~---l~aGAk~V~iS 122 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAH---IAAGAKKVLFS 122 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHH---HHcCCEEEEec
Confidence 555432 4899999999987666555432 33465555555
No 455
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.19 E-value=0.65 Score=44.48 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..+|..|++.| ++|++.+|+++..+.+.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAA 47 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 468999996 999999999999999 999999999876655543
No 456
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.18 E-value=0.25 Score=57.13 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
+.+||+|||+|.-|...|..|++.| ++|+++++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEeccc
Confidence 4679999999999999999999999 9999999764
No 457
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.18 E-value=0.11 Score=53.99 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=31.4
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
|...+|.|||+|..|.++|..|+++| ++|+++++.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 33458999999999999999999999 999999985
No 458
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.18 E-value=0.19 Score=50.25 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=54.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
.++|+||| ...+|.++|..|.+.|. +..|+++.... .++++.++.||+|
T Consensus 161 Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIv 212 (297)
T PRK14168 161 GAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------------------------KNLARHCQRADIL 212 (297)
T ss_pred CCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCEE
Confidence 57999999 58899999999998721 17888764321 1566778999999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|.++.-..+ + -..++++|++||++.
T Consensus 213 VsAvGkp~~---i--~~~~ik~gavVIDvG 237 (297)
T PRK14168 213 IVAAGVPNL---V--KPEWIKPGATVIDVG 237 (297)
T ss_pred EEecCCcCc---c--CHHHcCCCCEEEecC
Confidence 999974432 1 135678899999875
No 459
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.16 E-value=0.96 Score=45.06 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
..||.|+|+|.+|+.+|.+|+.+|. ..|+++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence 3689999999999999999999995 5788998664
No 460
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.15 E-value=0.56 Score=45.17 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=36.1
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
+|+|.|.| .|.+|..++..|++.| ++|++.+|+.+..+++.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG--ATLGLVARRTDALQAFAA 44 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 46899999 5999999999999999 999999999877665543
No 461
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=93.14 E-value=4.3 Score=40.01 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=91.3
Q ss_pred CceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEE
Q 012720 185 ENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS 263 (458)
Q Consensus 185 ~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~ 263 (458)
-++++++|-.|+++++|++|+.+|-- ...++++.+.+++++|.+|.+.= ++.+- .+...+++ +++. ++.+.+
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tC-TIpt~---~ly~~le~-l~R~--DvgIsS 199 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHAC-TIPTT---KFAKIFKD-LGRD--DLNVTS 199 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccc-cCCHH---HHHHHHHH-hCcc--cCCeec
Confidence 35778877778899999999999964 47889999999999998875532 35442 34444544 3432 222221
Q ss_pred C-cccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHH--HHHHHHHHHHHHHHHHhc----cc-C
Q 012720 264 G-PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS-DVTGVE--IAGALKNVLAIAAGIVVG----MN-L 334 (458)
Q Consensus 264 g-P~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~--~~kalkNi~ai~~G~~~~----~k-l 334 (458)
- |...-+ ..|+.. ..-+-.+++..+++.++.++.+...+..+ |+.+.. .++++--+. ..|+++= .+ +
T Consensus 200 ~HPaaVPg-t~Gq~~-i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv~--~aGiL~Y~~~~tqIl 275 (342)
T PRK00961 200 YHPGAVPE-MKGQVY-IAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAIV--YAGILAYRDAVTQIL 275 (342)
T ss_pred cCCCCCCC-CCCcee-cccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 1 111100 012211 11122478999999999998887766543 333321 122211110 1132211 11 2
Q ss_pred CCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012720 335 GNN--SMAALVAQGCSEIRWLATKMGAK 360 (458)
Q Consensus 335 ~~n--~~~al~~~~l~E~~~la~a~Gi~ 360 (458)
+.. .........+.-+..|-+..|++
T Consensus 276 gAP~~mie~qa~eaL~tmasLme~~GI~ 303 (342)
T PRK00961 276 GAPADFAQMMADEALTQITALMREEGID 303 (342)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 222 22344556666777777877876
No 462
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.14 E-value=0.15 Score=54.34 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=50.6
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhhcCCCcc---------------CCCCCCCCceEEe
Q 012720 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKHCNCRY---------------FPEQKLPENVIAT 190 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~---------------~~~~~l~~~i~a~ 190 (458)
.+||+|||+|.-|.+.|..|+ +.| ++|++|++.+..--.+ ..|..+.+ .++.++..++.+-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLv-R~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG 115 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLI-RYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG 115 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEE-EEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence 579999999999999999775 557 9999999886321000 00110000 0111111233432
Q ss_pred C--CHHhhcCCCCEEEEcCcccc
Q 012720 191 T--DAKTALLGADYCLHAMPVQF 211 (458)
Q Consensus 191 ~--~~~ea~~~aDiVilaVp~~~ 211 (458)
. +.++..+..|.||+++-+..
T Consensus 116 ~Dvt~eeL~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 116 VDLKMEELRNHYNCVIFCCGASE 138 (506)
T ss_pred CccCHHHHHhcCCEEEEEcCCCC
Confidence 3 46676678999999998653
No 463
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=93.12 E-value=0.73 Score=40.55 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=72.3
Q ss_pred hhcCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720 123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (458)
Q Consensus 123 ~~~~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (458)
...+.++|+++|+ ..-+...+..|.++| ++|+-++....- +.+. | -++..++.|.-+
T Consensus 12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP~~~~-~eiL--G--------------~k~y~sL~dIpe 72 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNPKLAG-EEIL--G--------------EKVYPSLADIPE 72 (140)
T ss_pred HHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCcccch-HHhc--C--------------chhhhcHHhCCC
Confidence 3445689999998 568889999999999 999988885432 2222 1 234457878767
Q ss_pred CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch
Q 012720 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (458)
Q Consensus 199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t 240 (458)
..|+|-+..++..+.+++++.... +..++=+|-|+.+++
T Consensus 73 ~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~e 111 (140)
T COG1832 73 PIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNEE 111 (140)
T ss_pred CCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCHH
Confidence 899999999999999998886553 355666888998764
No 464
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.75 Score=46.11 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=35.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.+++.|.|+ |.+|..+|..|+++| ++|++.+|+.++.+...
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAV 55 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 467889995 889999999999999 99999999987665543
No 465
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.06 E-value=0.12 Score=50.43 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
|+++.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+..
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG--YEVWATARKAEDVEALAA 43 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 357889996 999999999999999 999999999877665543
No 466
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.04 E-value=0.69 Score=44.32 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..++..|+++| ++|++++|+++..+.+.+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG--AHVLVNGRNAATLEAAVA 53 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 578999996 999999999999999 999999999876655443
No 467
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.02 E-value=0.11 Score=53.98 Aligned_cols=35 Identities=31% Similarity=0.619 Sum_probs=32.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
.++|.|||+|.-|.++|..|+++| ++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCc
Confidence 568999999999999999999999 99999997653
No 468
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.00 E-value=0.28 Score=52.32 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.++|+|||+|..|...|..|++.| ++|+++++.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~ 176 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAG--HKVTVFERAD 176 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 579999999999999999999999 9999999764
No 469
>PRK07208 hypothetical protein; Provisional
Probab=93.00 E-value=0.12 Score=55.03 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=33.5
Q ss_pred hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
|+++++|.|||+|--|.+.|..|+++| ++|+++.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~ 37 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADP 37 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 566789999999999999999999999 9999998765
No 470
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.98 E-value=0.12 Score=53.46 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~ 161 (458)
+++|.|||+|..|.++|..|+++| ++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 468999999999999999999999 999999997
No 471
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.98 E-value=0.77 Score=44.04 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=35.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAA 51 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 468999996 999999999999999 99999999987655443
No 472
>PRK08013 oxidoreductase; Provisional
Probab=92.97 E-value=0.12 Score=53.76 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
.+|.|||+|..|.++|..|++.| ++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence 57999999999999999999999 99999998754
No 473
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.94 E-value=0.18 Score=53.27 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=32.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~ 164 (458)
+|||+|+|+|.-|.+.|+.|.+.| ++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc
Confidence 689999999999999999999999 999999966543
No 474
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.94 E-value=0.12 Score=50.85 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=31.2
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (458)
Q Consensus 129 kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~ 164 (458)
+|.|+|+ |.+|..++..|.+.| ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g--~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS--VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC--CcEEEEeCCCcc
Confidence 5889997 999999999999999 999999999764
No 475
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.64 Score=44.57 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.+++.|.|+ |.+|..++..|++.| ++|.+.+|+.+..+.+.+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAG--AQVAIAARHLDALEKLAD 51 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence 467999997 899999999999999 999999999877665543
No 476
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.93 E-value=0.23 Score=49.45 Aligned_cols=74 Identities=26% Similarity=0.291 Sum_probs=55.3
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (458)
.++|+||| ...+|.++|..|.++|. +..|+++.... .++.+.++.||+|
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADIv 208 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADII 208 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCEE
Confidence 57999999 57899999999998731 26888764322 1566677899999
Q ss_pred EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (458)
Q Consensus 204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s 233 (458)
|.++....+ +. ..++++|++||++.
T Consensus 209 IsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 209 IAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 999985443 11 35678999999875
No 477
>PRK08251 short chain dehydrogenase; Provisional
Probab=92.92 E-value=0.99 Score=42.96 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=35.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.+++.|.| .|.+|..++..|++.| ++|++.+|+++..+.+..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~ 44 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG--RDLALCARRTDRLEELKA 44 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 35789999 5999999999999999 999999999877665543
No 478
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.7 Score=44.71 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=35.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.+++.|.|+ |.+|..++..|++.| ++|++++|+.+..+.+.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~ 52 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAG--ADVLIAARTESQLDEVAE 52 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 478999996 689999999999999 999999999876655543
No 479
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.90 E-value=0.1 Score=55.22 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
.++++|||||.-|.+.|+.|.+.| ++|+++.|+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCC--CCceEEEecCC
Confidence 578999999999999999999999 99999988764
No 480
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.88 E-value=0.79 Score=43.94 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=35.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
+++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREG--AKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 57999996 899999999999999 999999999877666543
No 481
>PLN02650 dihydroflavonol-4-reductase
Probab=92.87 E-value=0.24 Score=50.28 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.++|.|.|+ |-+|+.++..|++.| ++|++++|+.+..+.+..........+... +...+.-....+++++++|+||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG--YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC--CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 468999996 999999999999999 999999988655444322100000000000 0001111123456677899998
Q ss_pred EcCc
Q 012720 205 HAMP 208 (458)
Q Consensus 205 laVp 208 (458)
.+..
T Consensus 83 H~A~ 86 (351)
T PLN02650 83 HVAT 86 (351)
T ss_pred EeCC
Confidence 8753
No 482
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=92.87 E-value=0.64 Score=45.45 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT 191 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~a----G~~-----~~V~v~~r~~------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (458)
..||.|+|+|+-|..+|..|.+. |.. .+++++|+.- +.....++.-.... -+ .....
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~------~~--~~~~~ 96 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKT------NP--EKDWG 96 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSS------ST--TT--S
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccC------cc--ccccc
Confidence 46899999999999999999998 842 4788888762 11111111100000 00 00114
Q ss_pred CHHhhcCCC--CEEEEcC--ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720 192 DAKTALLGA--DYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (458)
Q Consensus 192 ~~~ea~~~a--DiVilaV--p~~~v~~vl~~i~~~l~~~~ivV~~snGi~ 237 (458)
++.|+++.+ |++|=+. +.-..+++++.+.++.+ .-+|..++|-..
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e-rPIIF~LSNPt~ 145 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE-RPIIFPLSNPTP 145 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS-SEEEEE-SSSCG
T ss_pred CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC-CCEEEECCCCCC
Confidence 888999888 9998775 34568889888877654 456777888554
No 483
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.86 E-value=0.24 Score=46.95 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=35.7
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
||+.|.|+ |.+|..++..|++.| ++|++.+|++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g--~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG--HKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 57999996 999999999999999 999999999887766543
No 484
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.83 E-value=0.74 Score=44.29 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=35.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.++|.|.|+ |.+|..+|..|++.| ++|++.+|+.+..+.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAG--ARVVLSARKAEELEEAA 53 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 478999995 999999999999999 99999999987665544
No 485
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.85 Score=43.65 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..++..|++.| ++|++.+|++++++.+..
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRA 51 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 478999996 999999999999999 899999999887766644
No 486
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.82 E-value=0.12 Score=53.83 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHH
Q 012720 128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPA 163 (458)
Q Consensus 128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~ 163 (458)
|||+|||+|.-|.++|..|+++| + +|+++.|.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g--~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS--HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC--CCCEEEEecCCc
Confidence 68999999999999999999987 5 9999998764
No 487
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.82 E-value=0.37 Score=50.99 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=29.9
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
||.|||+|..|.+.|+.|++.| ++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCC
Confidence 7999999999999999999999 9999999764
No 488
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.82 E-value=0.6 Score=44.30 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=33.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~ 167 (458)
.++|.|.| .|.+|..++..|+++| ++|++.+|+.+....
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g--~~V~~~~r~~~~~~~ 45 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG--AEVIVVDICGDDAAA 45 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHH
Confidence 46899999 5999999999999999 999999999765443
No 489
>PRK06194 hypothetical protein; Provisional
Probab=92.76 E-value=0.69 Score=45.21 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=34.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
+++|.|.|+ |.+|..++..|++.| ++|++++|+.+..+.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALG--MKLVLADVQQDALDRAV 47 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence 468999995 899999999999999 99999999876655443
No 490
>PRK08643 acetoin reductase; Validated
Probab=92.76 E-value=0.8 Score=43.89 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=34.7
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
+++.|+|+ |.+|..++..|++.| ++|.+.+|+.+..+.+..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDG--FKVAIVDYNEETAQAAAD 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 57888885 899999999999999 999999999876665543
No 491
>PRK07045 putative monooxygenase; Reviewed
Probab=92.75 E-value=0.13 Score=53.06 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=32.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (458)
Q Consensus 127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~ 163 (458)
.++|.|||+|..|...|..|+++| ++|+++.+.++
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~ 39 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR 39 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence 468999999999999999999999 99999997764
No 492
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.27 Score=46.85 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=35.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
||+|.|.|+ |.+|..++..|+++| ++|++.+|+++..+.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG--ARLYLAARDVERLERLA 42 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHH
Confidence 468999995 999999999999999 99999999987665543
No 493
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.68 E-value=0.24 Score=50.36 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=48.2
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCCCEEE
Q 012720 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGADYCL 204 (458)
Q Consensus 127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~aDiVi 204 (458)
.|||.|.| +|.+|+.++..|++.| ++|++.+|+.+..+.+...-... +... +...+.-.....+++++.|+||
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDPAKSLHLLSKWKEG---DRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHhhccC---CeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 47999999 4999999999999999 99999999876555443221000 0000 0001110112345567789988
Q ss_pred EcCc
Q 012720 205 HAMP 208 (458)
Q Consensus 205 laVp 208 (458)
.+..
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 8764
No 494
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.65 E-value=0.86 Score=43.59 Aligned_cols=41 Identities=29% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.++|.|.|+ |.+|..++..|++.| ++|.+.+|+++..+.+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREG--AKVVVADRDAAGGEETV 48 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 368999996 899999999999999 89999999987665544
No 495
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.64 E-value=1.1 Score=43.62 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=36.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALG--ARVAIGDLDEALAKETAA 47 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 468999996 999999999999999 999999999887665543
No 496
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.62 E-value=0.95 Score=44.94 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l 168 (458)
.++|.|.|+ |.+|..+|..|++.| ++|++.+|+.+..+..
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~ 56 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKG--AHVVLAVRNLDKGKAA 56 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence 468999996 999999999999999 9999999998765543
No 497
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.59 E-value=1.1 Score=43.23 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=36.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
.+++.|.|+ |.+|..++..|+++| ++|++.+|+++.++.+.+
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEG--ARVAVLERSAEKLASLRQ 48 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 468999996 889999999999999 999999999887766654
No 498
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.59 E-value=0.28 Score=47.23 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~ 170 (458)
|+++.|+|+ |.+|..++..|++.| ++|.+++|+.+..+.+.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG--WRVGAYDINEAGLAALAA 43 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence 357999995 999999999999999 999999999887776654
No 499
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.52 E-value=0.4 Score=45.68 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (458)
Q Consensus 127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~ 162 (458)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G--~~V~~~~r~~ 40 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAG--AHVVVNYRQK 40 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 368999996 999999999999999 9999998875
No 500
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.51 E-value=1 Score=43.41 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=34.7
Q ss_pred CCeEEEECc-c-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720 127 TNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (458)
Q Consensus 127 ~~kI~IIGa-G-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~ 169 (458)
.+++.|.|+ | .+|..++..|++.| ++|++.+|+.+..+...
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~ 59 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETA 59 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 468999997 6 69999999999999 89999999887665543
Done!