Query 012721
Match_columns 457
No_of_seqs 488 out of 1544
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 05:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.8E-48 8.2E-53 326.0 27.9 321 29-445 112-469 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-45 3.7E-50 313.9 21.9 280 30-454 173-455 (459)
3 KOG1354 Serine/threonine prote 100.0 1E-43 2.2E-48 295.6 21.8 370 7-429 5-374 (433)
4 KOG0271 Notchless-like WD40 re 100.0 7E-42 1.5E-46 288.3 23.7 287 27-412 152-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-40 2.3E-45 284.7 17.5 242 27-412 212-458 (459)
6 KOG0286 G-protein beta subunit 100.0 2.7E-38 5.9E-43 257.7 30.2 279 28-444 51-332 (343)
7 KOG0279 G protein beta subunit 100.0 7.4E-38 1.6E-42 253.7 30.8 300 26-414 9-313 (315)
8 KOG0265 U5 snRNP-specific prot 100.0 5E-38 1.1E-42 257.2 26.0 286 29-456 44-335 (338)
9 KOG0315 G-protein beta subunit 100.0 3.8E-37 8.2E-42 245.5 27.4 271 29-436 36-309 (311)
10 KOG0318 WD40 repeat stress pro 100.0 4.6E-36 9.9E-41 263.2 34.1 334 11-445 177-591 (603)
11 KOG0263 Transcription initiati 100.0 1.4E-37 3E-42 285.9 25.7 268 32-416 378-651 (707)
12 KOG0295 WD40 repeat-containing 100.0 1.1E-36 2.3E-41 255.6 24.6 272 29-444 105-393 (406)
13 KOG0284 Polyadenylation factor 100.0 1.6E-37 3.5E-42 264.1 17.1 277 32-454 96-375 (464)
14 KOG0273 Beta-transducin family 100.0 2.5E-35 5.5E-40 255.2 29.9 278 30-414 233-523 (524)
15 KOG0286 G-protein beta subunit 100.0 2.4E-35 5.3E-40 240.6 26.8 244 32-412 97-343 (343)
16 COG5170 CDC55 Serine/threonine 100.0 1.1E-36 2.3E-41 250.9 17.8 361 11-415 5-368 (460)
17 KOG0316 Conserved WD40 repeat- 100.0 3.3E-35 7.1E-40 232.6 24.4 274 30-449 15-292 (307)
18 KOG0291 WD40-repeat-containing 100.0 9.4E-34 2E-38 258.7 34.9 332 28-444 141-537 (893)
19 KOG0266 WD40 repeat-containing 100.0 1.6E-34 3.6E-39 272.6 31.2 278 31-446 158-441 (456)
20 KOG0285 Pleiotropic regulator 100.0 2.5E-35 5.4E-40 246.8 22.1 258 11-422 138-396 (460)
21 KOG0293 WD40 repeat-containing 100.0 6.4E-35 1.4E-39 248.7 23.7 273 31-444 223-499 (519)
22 KOG0273 Beta-transducin family 100.0 2.4E-34 5.1E-39 249.2 26.2 289 28-443 174-509 (524)
23 KOG0319 WD40-repeat-containing 100.0 2.8E-34 6.1E-39 261.6 26.7 354 29-447 102-609 (775)
24 KOG0315 G-protein beta subunit 100.0 1.1E-33 2.3E-38 225.8 25.7 259 44-444 10-275 (311)
25 KOG0282 mRNA splicing factor [ 100.0 9.7E-35 2.1E-39 252.5 17.8 276 28-444 210-491 (503)
26 KOG0645 WD40 repeat protein [G 100.0 1.1E-32 2.5E-37 222.7 28.2 277 29-444 11-297 (312)
27 KOG0318 WD40 repeat stress pro 100.0 3.4E-32 7.3E-37 239.0 32.9 349 30-445 57-505 (603)
28 KOG0283 WD40 repeat-containing 100.0 2E-33 4.4E-38 260.7 25.0 277 30-416 265-578 (712)
29 KOG0263 Transcription initiati 100.0 2.2E-33 4.9E-38 258.2 23.5 202 28-357 447-650 (707)
30 KOG0276 Vesicle coat complex C 100.0 4.4E-33 9.5E-38 249.3 24.6 278 30-450 11-292 (794)
31 KOG0279 G protein beta subunit 100.0 1.8E-32 4E-37 222.4 24.8 244 93-448 7-254 (315)
32 KOG0291 WD40-repeat-containing 100.0 2.2E-31 4.9E-36 243.3 34.4 342 29-455 93-504 (893)
33 KOG1446 Histone H3 (Lys4) meth 100.0 3E-31 6.6E-36 219.6 31.6 280 31-449 13-297 (311)
34 KOG0295 WD40 repeat-containing 100.0 4.1E-33 8.8E-38 234.1 20.8 244 28-413 146-405 (406)
35 cd00200 WD40 WD40 domain, foun 100.0 3.1E-31 6.7E-36 238.4 34.5 270 30-444 7-278 (289)
36 KOG0292 Vesicle coat complex C 100.0 1E-32 2.2E-37 256.1 24.9 291 31-449 8-314 (1202)
37 KOG0284 Polyadenylation factor 100.0 9.2E-34 2E-38 241.3 16.5 241 30-414 136-380 (464)
38 KOG0313 Microtubule binding pr 100.0 1.8E-32 3.8E-37 231.5 22.8 303 15-451 88-413 (423)
39 KOG0645 WD40 repeat protein [G 100.0 1.3E-31 2.9E-36 216.5 26.0 242 30-414 59-311 (312)
40 KOG0281 Beta-TrCP (transducin 100.0 9E-34 2E-38 236.7 13.5 252 31-435 196-457 (499)
41 KOG0296 Angio-associated migra 100.0 2.7E-31 5.8E-36 223.4 28.4 321 28-444 60-385 (399)
42 KOG0275 Conserved WD40 repeat- 100.0 3.2E-32 7E-37 225.5 19.5 282 31-444 212-496 (508)
43 KOG0319 WD40-repeat-containing 100.0 5.6E-31 1.2E-35 240.3 29.2 340 30-445 60-565 (775)
44 PLN00181 protein SPA1-RELATED; 100.0 3.3E-30 7.2E-35 261.5 37.8 283 27-445 478-781 (793)
45 KOG0278 Serine/threonine kinas 100.0 9.4E-33 2E-37 220.6 14.7 275 25-445 7-285 (334)
46 KOG0772 Uncharacterized conser 100.0 1.9E-31 4.1E-36 233.7 22.4 304 29-448 164-478 (641)
47 KOG0640 mRNA cleavage stimulat 100.0 2.7E-31 5.8E-36 218.8 21.3 307 29-453 109-420 (430)
48 PTZ00421 coronin; Provisional 100.0 6.7E-30 1.5E-34 240.1 32.5 299 15-438 5-314 (493)
49 KOG0643 Translation initiation 100.0 9.3E-30 2E-34 205.5 26.5 298 25-416 3-319 (327)
50 KOG0266 WD40 repeat-containing 100.0 4.5E-30 9.9E-35 242.5 27.9 246 29-414 200-454 (456)
51 KOG1407 WD40 repeat protein [F 100.0 1.1E-29 2.4E-34 204.4 24.9 271 29-444 17-289 (313)
52 KOG0310 Conserved WD40 repeat- 100.0 6.8E-30 1.5E-34 222.8 24.2 303 2-455 2-307 (487)
53 KOG0277 Peroxisomal targeting 100.0 4.7E-30 1E-34 205.7 18.7 244 31-413 59-308 (311)
54 KOG0277 Peroxisomal targeting 100.0 6.4E-30 1.4E-34 204.9 19.3 231 113-444 60-295 (311)
55 KOG0285 Pleiotropic regulator 100.0 7.6E-30 1.7E-34 214.0 19.8 241 86-445 136-378 (460)
56 KOG0281 Beta-TrCP (transducin 100.0 2.2E-30 4.7E-35 216.6 16.4 237 28-416 233-479 (499)
57 KOG0647 mRNA export protein (c 100.0 1.4E-28 3.1E-33 202.1 26.3 283 31-448 26-314 (347)
58 KOG0306 WD40-repeat-containing 100.0 1.4E-28 3.1E-33 224.9 28.9 352 25-442 100-607 (888)
59 KOG0313 Microtubule binding pr 100.0 3.5E-29 7.7E-34 211.7 21.7 273 28-414 140-418 (423)
60 KOG0305 Anaphase promoting com 100.0 6.8E-29 1.5E-33 224.9 24.7 240 32-416 217-463 (484)
61 KOG0292 Vesicle coat complex C 100.0 2.2E-28 4.7E-33 227.5 28.2 251 29-414 48-321 (1202)
62 KOG0296 Angio-associated migra 100.0 2.1E-28 4.5E-33 206.0 25.4 301 11-414 88-398 (399)
63 KOG0306 WD40-repeat-containing 100.0 1.1E-28 2.4E-33 225.7 25.7 286 27-454 368-659 (888)
64 KOG0288 WD40 repeat protein Ti 100.0 6.6E-30 1.4E-34 218.3 16.5 271 31-444 174-448 (459)
65 KOG0265 U5 snRNP-specific prot 100.0 7.9E-29 1.7E-33 203.4 21.8 250 26-412 84-336 (338)
66 KOG0268 Sof1-like rRNA process 100.0 1.4E-29 3.1E-34 212.8 17.5 284 26-417 60-348 (433)
67 cd00200 WD40 WD40 domain, foun 100.0 1.1E-27 2.3E-32 215.3 30.7 240 29-412 48-289 (289)
68 PLN00181 protein SPA1-RELATED; 100.0 1.1E-27 2.4E-32 243.1 32.8 258 30-413 530-792 (793)
69 KOG0641 WD40 repeat protein [G 100.0 1.5E-26 3.2E-31 182.7 30.3 298 29-444 29-336 (350)
70 KOG0282 mRNA splicing factor [ 100.0 1.9E-29 4E-34 219.8 15.1 246 26-412 252-503 (503)
71 KOG0299 U3 snoRNP-associated p 100.0 9.8E-28 2.1E-32 207.9 25.2 310 30-455 140-453 (479)
72 PTZ00420 coronin; Provisional 100.0 8.4E-27 1.8E-31 220.1 33.5 240 93-440 66-319 (568)
73 KOG0643 Translation initiation 100.0 2.7E-27 5.9E-32 191.3 22.7 240 96-445 5-305 (327)
74 KOG0973 Histone transcription 100.0 2.2E-27 4.9E-32 226.3 25.3 305 31-443 12-341 (942)
75 KOG0289 mRNA splicing factor [ 100.0 1.4E-26 2.9E-31 199.3 25.8 281 31-454 218-501 (506)
76 KOG0310 Conserved WD40 repeat- 100.0 7.5E-27 1.6E-31 203.9 24.3 241 32-416 68-311 (487)
77 KOG0264 Nucleosome remodeling 100.0 2.4E-27 5.2E-32 205.5 21.1 266 28-415 120-405 (422)
78 KOG0308 Conserved WD40 repeat- 100.0 1.1E-27 2.5E-32 215.8 18.8 279 29-436 18-306 (735)
79 KOG0278 Serine/threonine kinas 100.0 3E-28 6.4E-33 195.0 13.1 245 27-418 54-301 (334)
80 PTZ00421 coronin; Provisional 100.0 5.7E-26 1.2E-30 213.7 30.8 220 27-366 70-299 (493)
81 KOG0276 Vesicle coat complex C 100.0 5.6E-27 1.2E-31 210.4 22.0 236 32-409 55-294 (794)
82 KOG0293 WD40 repeat-containing 100.0 3.7E-27 8.1E-32 201.5 18.9 246 27-415 264-514 (519)
83 KOG1332 Vesicle coat complex C 100.0 8.6E-27 1.9E-31 186.0 19.0 261 28-416 7-288 (299)
84 KOG0294 WD40 repeat-containing 100.0 6.2E-26 1.4E-30 187.7 23.9 252 11-416 28-283 (362)
85 KOG1036 Mitotic spindle checkp 100.0 1.7E-25 3.7E-30 184.7 26.1 279 32-449 13-296 (323)
86 KOG0274 Cdc4 and related F-box 100.0 4.3E-26 9.3E-31 214.7 25.7 253 31-436 207-463 (537)
87 KOG0274 Cdc4 and related F-box 100.0 3.7E-26 8.1E-31 215.1 24.8 255 13-423 232-490 (537)
88 KOG4283 Transcription-coupled 100.0 2E-25 4.3E-30 183.1 25.6 303 30-444 41-352 (397)
89 KOG2919 Guanine nucleotide-bin 100.0 6.6E-26 1.4E-30 188.2 22.9 299 34-446 51-359 (406)
90 KOG0641 WD40 repeat protein [G 99.9 8.6E-25 1.9E-29 172.7 27.7 255 30-414 87-349 (350)
91 KOG0300 WD40 repeat-containing 99.9 3.2E-26 6.9E-31 189.6 20.2 305 28-441 144-458 (481)
92 KOG0772 Uncharacterized conser 99.9 1.4E-26 3E-31 203.4 18.6 264 32-415 214-488 (641)
93 KOG0275 Conserved WD40 repeat- 99.9 1.6E-26 3.5E-31 191.9 16.8 246 28-412 259-507 (508)
94 KOG0288 WD40 repeat protein Ti 99.9 2.7E-26 5.8E-31 196.3 18.1 241 30-412 217-459 (459)
95 KOG2096 WD40 repeat protein [G 99.9 1.4E-25 3.1E-30 185.8 21.4 295 28-414 82-402 (420)
96 KOG1407 WD40 repeat protein [F 99.9 1.1E-25 2.3E-30 181.6 19.8 232 95-444 14-248 (313)
97 KOG0316 Conserved WD40 repeat- 99.9 1.2E-25 2.6E-30 178.6 19.8 220 94-433 10-231 (307)
98 KOG0289 mRNA splicing factor [ 99.9 5.2E-25 1.1E-29 189.6 25.1 246 28-413 257-505 (506)
99 KOG0283 WD40 repeat-containing 99.9 1.8E-25 3.8E-30 208.2 23.0 289 111-444 265-563 (712)
100 KOG0269 WD40 repeat-containing 99.9 1.4E-26 3.1E-31 212.7 15.5 246 34-416 89-342 (839)
101 KOG0305 Anaphase promoting com 99.9 6.2E-25 1.3E-29 199.3 24.6 266 33-446 178-450 (484)
102 KOG2445 Nuclear pore complex c 99.9 3.2E-24 6.9E-29 177.1 25.6 283 29-428 10-334 (361)
103 KOG0973 Histone transcription 99.9 1.3E-24 2.8E-29 207.6 25.9 270 27-416 64-357 (942)
104 KOG1274 WD40 repeat protein [G 99.9 3.1E-24 6.8E-29 201.1 27.9 276 29-444 10-287 (933)
105 PTZ00420 coronin; Provisional 99.9 6.4E-24 1.4E-28 200.7 29.8 211 29-357 71-294 (568)
106 KOG0299 U3 snoRNP-associated p 99.9 1.2E-24 2.5E-29 188.9 21.6 249 30-413 200-455 (479)
107 KOG0264 Nucleosome remodeling 99.9 5.1E-25 1.1E-29 191.1 19.4 262 103-447 114-393 (422)
108 KOG1273 WD40 repeat protein [G 99.9 2.8E-24 6.1E-29 177.9 22.8 293 35-416 26-324 (405)
109 KOG2055 WD40 repeat protein [G 99.9 6.1E-24 1.3E-28 184.5 24.6 291 32-414 213-512 (514)
110 KOG0640 mRNA cleavage stimulat 99.9 6.3E-25 1.4E-29 181.4 17.7 255 28-414 168-426 (430)
111 KOG1539 WD repeat protein [Gen 99.9 2.9E-23 6.3E-28 192.6 30.6 336 31-444 201-634 (910)
112 KOG0300 WD40 repeat-containing 99.9 9.5E-25 2.1E-29 180.9 18.5 273 26-416 184-478 (481)
113 KOG0308 Conserved WD40 repeat- 99.9 9.5E-25 2.1E-29 197.1 16.5 233 125-444 35-272 (735)
114 KOG0267 Microtubule severing p 99.9 1.3E-25 2.8E-30 205.0 9.9 229 114-448 29-259 (825)
115 KOG0269 WD40 repeat-containing 99.9 6.7E-24 1.5E-28 195.3 20.8 276 32-438 39-320 (839)
116 KOG4328 WD40 protein [Function 99.9 2E-23 4.3E-28 181.2 22.4 290 31-446 185-483 (498)
117 KOG0301 Phospholipase A2-activ 99.9 2.5E-23 5.4E-28 189.4 24.1 265 29-445 11-277 (745)
118 KOG2048 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 183.5 29.4 272 32-438 25-302 (691)
119 KOG0302 Ribosome Assembly prot 99.9 2.7E-23 5.9E-28 176.1 21.8 267 29-412 148-436 (440)
120 KOG1446 Histone H3 (Lys4) meth 99.9 2.4E-22 5.3E-27 167.0 26.9 230 114-447 15-252 (311)
121 KOG0321 WD40 repeat-containing 99.9 2.1E-23 4.5E-28 188.1 21.8 286 36-438 53-371 (720)
122 KOG1063 RNA polymerase II elon 99.9 4.7E-23 1E-27 187.5 23.9 358 27-441 186-632 (764)
123 KOG0639 Transducin-like enhanc 99.9 2E-23 4.4E-28 183.1 20.1 277 27-445 414-692 (705)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-21 5.2E-26 175.8 34.7 293 44-437 1-300 (300)
125 KOG1539 WD repeat protein [Gen 99.9 7.7E-22 1.7E-26 183.3 31.1 325 26-416 237-650 (910)
126 KOG1408 WD40 repeat protein [F 99.9 1.3E-23 2.8E-28 191.7 19.0 255 27-415 454-714 (1080)
127 KOG2096 WD40 repeat protein [G 99.9 8.7E-23 1.9E-27 169.4 20.8 297 94-455 79-398 (420)
128 KOG0646 WD40 repeat protein [G 99.9 8.2E-23 1.8E-27 177.9 21.7 237 31-372 80-322 (476)
129 KOG0268 Sof1-like rRNA process 99.9 5.6E-24 1.2E-28 179.3 12.8 274 93-445 58-333 (433)
130 KOG0646 WD40 repeat protein [G 99.9 6.9E-23 1.5E-27 178.3 19.6 236 114-444 82-336 (476)
131 KOG0294 WD40 repeat-containing 99.9 4.8E-22 1E-26 164.8 23.2 251 47-435 4-257 (362)
132 KOG1408 WD40 repeat protein [F 99.9 1.3E-22 2.8E-27 185.3 21.7 330 14-444 351-700 (1080)
133 KOG0302 Ribosome Assembly prot 99.9 9.3E-23 2E-27 172.9 19.2 257 108-444 146-425 (440)
134 KOG1332 Vesicle coat complex C 99.9 6.5E-23 1.4E-27 164.0 16.9 220 26-360 50-290 (299)
135 KOG2106 Uncharacterized conser 99.9 4.3E-21 9.2E-26 168.7 29.0 334 25-445 97-465 (626)
136 KOG0647 mRNA export protein (c 99.9 5.6E-22 1.2E-26 163.5 21.6 243 28-403 68-312 (347)
137 KOG0650 WD40 repeat nucleolar 99.9 2.8E-22 6E-27 179.6 21.4 312 25-444 393-722 (733)
138 KOG4378 Nuclear protein COP1 [ 99.9 9.8E-22 2.1E-26 172.4 23.3 263 114-439 35-305 (673)
139 KOG0639 Transducin-like enhanc 99.9 1.1E-22 2.4E-27 178.5 16.5 255 13-413 444-703 (705)
140 KOG0301 Phospholipase A2-activ 99.9 6.8E-22 1.5E-26 180.1 22.2 231 30-415 55-289 (745)
141 KOG0267 Microtubule severing p 99.9 1.1E-23 2.4E-28 192.5 9.8 233 30-406 26-260 (825)
142 KOG2106 Uncharacterized conser 99.9 1.3E-20 2.9E-25 165.7 26.8 271 32-412 246-519 (626)
143 KOG1036 Mitotic spindle checkp 99.9 6.2E-21 1.3E-25 157.9 23.1 244 27-404 49-294 (323)
144 KOG1063 RNA polymerase II elon 99.9 2.7E-21 5.9E-26 176.2 23.0 328 28-439 263-676 (764)
145 KOG0321 WD40 repeat-containing 99.9 9.2E-22 2E-26 177.6 19.4 283 27-416 95-393 (720)
146 KOG1034 Transcriptional repres 99.9 8.7E-22 1.9E-26 164.2 16.5 268 30-414 87-383 (385)
147 KOG0270 WD40 repeat-containing 99.9 2.3E-21 4.9E-26 167.9 19.6 267 33-417 174-452 (463)
148 KOG1188 WD40 repeat protein [G 99.9 2.2E-21 4.9E-26 162.6 18.8 195 45-357 41-243 (376)
149 KOG0307 Vesicle coat complex C 99.9 2.2E-22 4.9E-27 193.4 13.8 193 215-444 113-313 (1049)
150 KOG2048 WD40 repeat protein [G 99.9 3.4E-19 7.4E-24 162.3 32.0 347 31-443 109-533 (691)
151 KOG1445 Tumor-specific antigen 99.9 5.3E-21 1.2E-25 172.6 20.2 151 268-444 628-781 (1012)
152 KOG4378 Nuclear protein COP1 [ 99.9 2.9E-21 6.3E-26 169.4 17.3 223 33-396 80-305 (673)
153 KOG1009 Chromatin assembly com 99.9 2.6E-20 5.6E-25 159.7 21.7 326 32-444 13-359 (434)
154 KOG4283 Transcription-coupled 99.9 1.2E-20 2.7E-25 155.1 18.3 231 114-418 44-280 (397)
155 KOG1034 Transcriptional repres 99.9 2.2E-20 4.8E-25 155.9 19.4 308 31-444 37-370 (385)
156 KOG1538 Uncharacterized conser 99.9 8.2E-20 1.8E-24 166.0 23.9 276 34-416 14-295 (1081)
157 KOG0649 WD40 repeat protein [G 99.9 2.1E-19 4.5E-24 144.0 23.4 282 33-436 11-294 (325)
158 KOG2445 Nuclear pore complex c 99.9 8.2E-20 1.8E-24 151.2 20.7 271 8-369 43-333 (361)
159 KOG1274 WD40 repeat protein [G 99.9 1.5E-19 3.3E-24 170.1 24.8 240 31-411 55-297 (933)
160 KOG1007 WD repeat protein TSSC 99.9 1.4E-19 3E-24 148.6 21.4 260 30-416 61-363 (370)
161 KOG0303 Actin-binding protein 99.9 2.3E-19 5E-24 153.3 23.5 235 96-438 76-320 (472)
162 KOG0290 Conserved WD40 repeat- 99.9 1.5E-19 3.3E-24 148.4 20.9 193 215-443 147-351 (364)
163 KOG0307 Vesicle coat complex C 99.9 9.1E-21 2E-25 182.5 14.7 263 24-417 56-330 (1049)
164 KOG1517 Guanine nucleotide bin 99.9 3.9E-19 8.4E-24 169.5 25.1 302 33-416 1065-1383(1387)
165 KOG0642 Cell-cycle nuclear pro 99.9 2E-20 4.3E-25 166.9 15.5 282 27-426 289-572 (577)
166 KOG4227 WD40 repeat protein [G 99.8 4.6E-19 9.9E-24 151.4 21.7 299 28-444 52-374 (609)
167 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 7.1E-18 1.5E-22 153.0 29.9 258 31-371 29-293 (300)
168 KOG0270 WD40 repeat-containing 99.8 1.5E-19 3.2E-24 156.8 17.3 206 29-357 240-450 (463)
169 KOG2055 WD40 repeat protein [G 99.8 6.4E-19 1.4E-23 153.6 20.1 229 114-443 214-451 (514)
170 KOG1273 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 145.0 18.9 237 116-444 26-310 (405)
171 KOG1007 WD repeat protein TSSC 99.8 4.2E-18 9E-23 140.0 19.4 224 31-356 122-361 (370)
172 KOG0322 G-protein beta subunit 99.8 2.5E-18 5.5E-23 139.5 17.6 300 30-413 12-322 (323)
173 KOG1587 Cytoplasmic dynein int 99.8 1.8E-17 3.8E-22 155.4 25.5 287 11-416 224-518 (555)
174 KOG0644 Uncharacterized conser 99.8 1.6E-19 3.5E-24 167.9 11.5 265 28-442 186-453 (1113)
175 KOG1445 Tumor-specific antigen 99.8 1.8E-18 3.9E-23 156.5 17.8 224 114-430 628-860 (1012)
176 KOG0650 WD40 repeat nucleolar 99.8 5.3E-18 1.2E-22 152.5 18.9 267 92-446 391-669 (733)
177 PRK01742 tolB translocation pr 99.8 1.4E-17 3.1E-22 157.2 22.5 214 114-439 204-427 (429)
178 KOG0303 Actin-binding protein 99.8 1.7E-17 3.8E-22 142.0 20.6 212 27-357 76-295 (472)
179 KOG1963 WD40 repeat protein [G 99.8 7.7E-17 1.7E-21 151.6 25.3 309 37-427 21-334 (792)
180 KOG1523 Actin-related protein 99.8 3.9E-17 8.4E-22 136.3 20.7 258 32-448 10-270 (361)
181 PRK11028 6-phosphogluconolacto 99.8 2.4E-15 5.2E-20 137.9 33.4 259 114-414 35-304 (330)
182 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-15 5E-20 143.4 34.2 268 28-436 61-337 (466)
183 KOG1009 Chromatin assembly com 99.8 1.8E-16 3.8E-21 136.4 22.5 268 29-416 62-374 (434)
184 KOG1524 WD40 repeat-containing 99.8 1.9E-17 4.2E-22 147.1 17.0 207 45-410 76-282 (737)
185 KOG4328 WD40 protein [Function 99.8 2.9E-17 6.3E-22 143.2 17.7 258 29-414 231-495 (498)
186 KOG2919 Guanine nucleotide-bin 99.8 9.1E-17 2E-21 134.2 19.5 244 29-405 101-361 (406)
187 KOG1963 WD40 repeat protein [G 99.8 8.6E-16 1.9E-20 144.7 26.6 302 28-449 201-531 (792)
188 KOG1334 WD40 repeat protein [G 99.8 2.5E-17 5.5E-22 144.7 15.0 294 28-444 138-453 (559)
189 KOG2110 Uncharacterized conser 99.7 6.7E-15 1.4E-19 125.5 26.2 159 219-416 88-250 (391)
190 KOG0290 Conserved WD40 repeat- 99.7 7E-16 1.5E-20 127.1 19.4 209 28-352 146-361 (364)
191 KOG1310 WD40 repeat protein [G 99.7 1.7E-16 3.7E-21 141.6 16.8 240 27-357 45-304 (758)
192 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.5E-21 143.2 15.0 256 114-453 295-555 (577)
193 PRK03629 tolB translocation pr 99.7 1.3E-14 2.8E-19 136.8 28.5 213 114-438 199-428 (429)
194 KOG1240 Protein kinase contain 99.7 8.8E-15 1.9E-19 142.4 27.3 295 8-417 1028-1337(1431)
195 KOG0322 G-protein beta subunit 99.7 6.3E-16 1.4E-20 125.7 16.2 271 114-440 15-306 (323)
196 KOG2110 Uncharacterized conser 99.7 8.5E-14 1.8E-18 118.8 29.3 157 114-357 88-249 (391)
197 PRK01742 tolB translocation pr 99.7 1.5E-15 3.2E-20 143.5 21.0 217 29-395 200-426 (429)
198 KOG1587 Cytoplasmic dynein int 99.7 1E-14 2.2E-19 137.1 25.7 256 114-449 243-508 (555)
199 KOG2111 Uncharacterized conser 99.7 5.8E-14 1.3E-18 117.5 27.1 239 34-357 7-257 (346)
200 KOG1538 Uncharacterized conser 99.7 9.1E-15 2E-19 133.6 21.6 232 115-445 14-281 (1081)
201 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3.1E-20 131.8 15.7 200 36-356 148-354 (398)
202 COG2319 FOG: WD40 repeat [Gene 99.7 2.8E-13 6.1E-18 129.0 33.5 273 28-444 151-429 (466)
203 KOG1524 WD40 repeat-containing 99.7 3.2E-15 6.8E-20 133.2 16.6 176 215-449 101-278 (737)
204 KOG1310 WD40 repeat protein [G 99.7 3E-15 6.5E-20 133.8 16.4 249 93-422 42-311 (758)
205 KOG2139 WD40 repeat protein [G 99.7 7.9E-14 1.7E-18 118.6 23.8 268 32-416 98-385 (445)
206 PRK11028 6-phosphogluconolacto 99.7 1.9E-13 4E-18 125.4 27.9 272 130-444 5-290 (330)
207 PRK05137 tolB translocation pr 99.7 1.7E-13 3.7E-18 130.0 28.2 212 114-438 202-433 (435)
208 PRK04922 tolB translocation pr 99.6 6.7E-14 1.4E-18 132.6 24.6 212 114-437 204-432 (433)
209 KOG2321 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 124.6 23.8 291 27-416 46-345 (703)
210 KOG1240 Protein kinase contain 99.6 6.5E-14 1.4E-18 136.5 23.7 243 86-426 1033-1284(1431)
211 PRK02889 tolB translocation pr 99.6 2.2E-13 4.8E-18 128.6 27.0 215 114-438 196-425 (427)
212 KOG4227 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 124.2 16.7 240 114-440 57-306 (609)
213 KOG0649 WD40 repeat protein [G 99.6 3.8E-13 8.2E-18 108.5 23.6 251 28-412 58-314 (325)
214 KOG0771 Prolactin regulatory e 99.6 5.7E-15 1.2E-19 128.1 14.0 182 222-444 148-341 (398)
215 KOG4497 Uncharacterized conser 99.6 1E-13 2.3E-18 116.5 19.6 308 32-441 48-416 (447)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 4.9E-14 1.1E-18 125.8 18.1 94 218-337 290-384 (636)
217 KOG1517 Guanine nucleotide bin 99.6 1.3E-13 2.8E-18 132.5 20.7 264 32-357 1109-1382(1387)
218 PF08662 eIF2A: Eukaryotic tra 99.6 8.5E-14 1.8E-18 115.7 17.4 148 222-414 9-179 (194)
219 KOG2394 WD40 protein DMR-N9 [G 99.6 3.6E-14 7.8E-19 126.7 15.4 190 227-437 182-384 (636)
220 PRK03629 tolB translocation pr 99.6 3.2E-13 7E-18 127.4 23.0 215 30-394 196-427 (429)
221 KOG2111 Uncharacterized conser 99.6 2.1E-12 4.5E-17 108.3 23.5 248 114-416 6-258 (346)
222 KOG3881 Uncharacterized conser 99.6 4.3E-13 9.4E-18 115.4 19.7 255 31-416 54-322 (412)
223 PRK02889 tolB translocation pr 99.6 5.4E-13 1.2E-17 126.0 22.3 208 29-370 192-415 (427)
224 KOG1272 WD40-repeat-containing 99.6 1.2E-14 2.5E-19 127.5 9.8 218 116-443 132-350 (545)
225 PRK04922 tolB translocation pr 99.6 5.1E-13 1.1E-17 126.6 21.6 207 29-370 200-423 (433)
226 KOG1188 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 118.0 13.6 178 231-446 41-230 (376)
227 KOG4497 Uncharacterized conser 99.6 4.4E-14 9.6E-19 118.7 12.2 225 37-414 13-240 (447)
228 KOG0644 Uncharacterized conser 99.6 5E-15 1.1E-19 138.6 6.9 232 92-447 181-415 (1113)
229 PF08662 eIF2A: Eukaryotic tra 99.5 1.2E-12 2.6E-17 108.8 19.4 117 217-366 58-187 (194)
230 PF10282 Lactonase: Lactonase, 99.5 4.2E-10 9.1E-15 103.3 37.0 272 32-416 36-326 (345)
231 KOG3881 Uncharacterized conser 99.5 8.1E-13 1.8E-17 113.7 17.6 209 216-456 103-317 (412)
232 PRK04792 tolB translocation pr 99.5 1.1E-11 2.5E-16 117.4 27.0 212 114-438 218-447 (448)
233 PRK05137 tolB translocation pr 99.5 5.1E-12 1.1E-16 120.0 24.2 182 215-444 198-393 (435)
234 KOG2139 WD40 repeat protein [G 99.5 1E-12 2.2E-17 112.0 15.9 202 218-450 98-303 (445)
235 KOG2321 WD40 repeat protein [G 99.5 2.7E-12 5.9E-17 115.8 19.4 286 105-448 43-334 (703)
236 TIGR02800 propeller_TolB tol-p 99.5 2.3E-11 5.1E-16 115.6 27.2 210 114-435 190-416 (417)
237 PF02239 Cytochrom_D1: Cytochr 99.5 3.3E-11 7.2E-16 110.4 26.0 282 36-446 40-334 (369)
238 KOG1523 Actin-related protein 99.5 8.2E-13 1.8E-17 110.8 14.0 191 217-442 9-221 (361)
239 PRK00178 tolB translocation pr 99.5 8E-11 1.7E-15 112.1 27.9 213 114-438 199-428 (430)
240 COG2706 3-carboxymuconate cycl 99.5 9.1E-10 2E-14 94.8 30.6 304 13-436 20-345 (346)
241 KOG1272 WD40-repeat-containing 99.5 5E-13 1.1E-17 117.4 10.6 255 33-438 130-390 (545)
242 KOG2315 Predicted translation 99.4 4.8E-10 1E-14 101.4 28.7 308 32-454 34-379 (566)
243 COG5354 Uncharacterized protei 99.4 2E-10 4.3E-15 102.6 24.5 114 265-416 272-397 (561)
244 PF02239 Cytochrom_D1: Cytochr 99.4 5.6E-10 1.2E-14 102.4 27.9 271 44-445 5-286 (369)
245 KOG0974 WD-repeat protein WDR6 99.4 1.2E-11 2.7E-16 119.2 17.4 149 225-416 140-290 (967)
246 PRK01029 tolB translocation pr 99.4 3.6E-10 7.7E-15 106.4 26.8 178 221-439 233-426 (428)
247 TIGR02800 propeller_TolB tol-p 99.4 1.5E-10 3.2E-15 110.1 24.3 181 216-444 187-381 (417)
248 PRK00178 tolB translocation pr 99.4 1.3E-10 2.7E-15 110.7 23.0 205 29-368 195-416 (430)
249 KOG1409 Uncharacterized conser 99.4 4.9E-11 1.1E-15 101.3 17.3 204 31-301 67-273 (404)
250 PRK04792 tolB translocation pr 99.4 9.2E-11 2E-15 111.3 21.5 206 30-370 215-437 (448)
251 KOG1354 Serine/threonine prote 99.4 2E-11 4.3E-16 103.6 14.1 250 114-427 26-314 (433)
252 KOG0280 Uncharacterized conser 99.4 1.9E-10 4.1E-15 95.7 19.3 164 215-416 162-335 (339)
253 KOG2314 Translation initiation 99.4 6.9E-10 1.5E-14 100.2 24.0 320 36-444 214-599 (698)
254 PF10282 Lactonase: Lactonase, 99.4 2.7E-08 5.8E-13 91.5 35.4 205 220-444 88-308 (345)
255 KOG2041 WD40 repeat protein [G 99.3 5.1E-10 1.1E-14 104.0 23.0 269 30-414 12-337 (1189)
256 COG2706 3-carboxymuconate cycl 99.3 1.3E-08 2.8E-13 87.9 29.6 244 114-444 40-307 (346)
257 KOG4547 WD40 repeat-containing 99.3 1.6E-09 3.5E-14 98.7 23.8 194 41-357 2-221 (541)
258 PRK01029 tolB translocation pr 99.3 2.3E-09 4.9E-14 101.0 25.2 111 221-357 283-404 (428)
259 KOG0280 Uncharacterized conser 99.3 1.2E-09 2.5E-14 91.2 20.2 158 221-416 124-286 (339)
260 KOG1064 RAVE (regulator of V-A 99.3 3.4E-11 7.5E-16 122.0 13.4 217 10-366 2186-2407(2439)
261 KOG1334 WD40 repeat protein [G 99.3 4.6E-11 1E-15 105.9 12.3 271 28-416 181-468 (559)
262 KOG2315 Predicted translation 99.2 1.1E-09 2.4E-14 99.1 19.1 243 36-366 129-398 (566)
263 KOG4547 WD40 repeat-containing 99.2 2.2E-09 4.7E-14 98.0 20.7 146 229-415 69-221 (541)
264 COG4946 Uncharacterized protei 99.2 1.8E-07 4E-12 83.4 30.8 169 229-444 331-505 (668)
265 KOG1409 Uncharacterized conser 99.2 7.3E-10 1.6E-14 94.3 15.0 232 91-416 14-272 (404)
266 COG5170 CDC55 Serine/threonine 99.2 4.6E-10 9.9E-15 94.2 11.6 266 114-445 27-355 (460)
267 KOG3914 WD repeat protein WDR4 99.1 1.3E-09 2.7E-14 94.9 13.9 80 215-303 148-228 (390)
268 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.1E-07 6.8E-12 82.5 29.1 124 274-423 200-338 (352)
269 KOG0974 WD-repeat protein WDR6 99.1 4.6E-09 9.9E-14 101.9 18.4 200 32-357 87-289 (967)
270 KOG0309 Conserved WD40 repeat- 99.1 1.3E-09 2.8E-14 101.8 13.4 301 31-416 23-341 (1081)
271 KOG4532 WD40-like repeat conta 99.1 2.9E-08 6.2E-13 81.9 19.7 169 221-416 161-333 (344)
272 PLN02919 haloacid dehalogenase 99.1 3.2E-07 6.9E-12 95.6 32.2 187 222-417 686-891 (1057)
273 PF04762 IKI3: IKI3 family; I 99.1 1.5E-07 3.3E-12 96.0 28.4 174 222-416 260-458 (928)
274 COG4946 Uncharacterized protei 99.1 6.6E-08 1.4E-12 86.1 21.8 146 215-404 356-508 (668)
275 PRK04043 tolB translocation pr 99.0 1.9E-07 4E-12 87.6 25.1 166 219-434 233-418 (419)
276 PRK04043 tolB translocation pr 99.0 1.8E-07 4E-12 87.6 24.2 111 223-366 281-408 (419)
277 KOG2695 WD40 repeat protein [G 99.0 1.8E-09 3.8E-14 92.1 9.6 170 230-438 225-403 (425)
278 COG5354 Uncharacterized protei 99.0 1.2E-07 2.6E-12 85.3 21.4 308 33-406 72-421 (561)
279 KOG0882 Cyclophilin-related pe 99.0 2.2E-08 4.7E-13 88.5 16.2 325 29-411 6-369 (558)
280 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.1E-06 6.8E-11 76.2 29.5 226 124-440 54-311 (352)
281 KOG1064 RAVE (regulator of V-A 99.0 4.3E-09 9.4E-14 107.4 12.4 187 114-416 2209-2400(2439)
282 KOG1912 WD40 repeat protein [G 99.0 8.6E-08 1.9E-12 90.5 19.3 221 31-299 54-305 (1062)
283 PF04762 IKI3: IKI3 family; I 99.0 2.1E-06 4.4E-11 88.0 30.9 231 114-444 76-365 (928)
284 PF15492 Nbas_N: Neuroblastoma 99.0 1.7E-06 3.7E-11 72.8 24.4 37 388-425 233-269 (282)
285 KOG4714 Nucleoporin [Nuclear s 98.9 2.1E-08 4.5E-13 82.4 11.2 96 193-299 158-255 (319)
286 KOG4190 Uncharacterized conser 98.9 1E-08 2.2E-13 92.9 10.2 284 28-445 731-1024(1034)
287 KOG4190 Uncharacterized conser 98.9 6.7E-09 1.5E-13 94.0 8.6 221 93-416 727-950 (1034)
288 PF08450 SGL: SMP-30/Gluconola 98.9 8.4E-06 1.8E-10 71.3 27.7 227 37-401 4-242 (246)
289 KOG4714 Nucleoporin [Nuclear s 98.9 3.8E-08 8.2E-13 80.9 11.6 184 229-453 100-301 (319)
290 KOG4532 WD40-like repeat conta 98.8 2.8E-07 6E-12 76.3 15.7 176 229-443 83-266 (344)
291 PLN02919 haloacid dehalogenase 98.8 6.4E-06 1.4E-10 86.1 27.7 132 220-357 741-889 (1057)
292 KOG3914 WD repeat protein WDR4 98.8 1.4E-07 3E-12 82.4 13.0 160 222-423 66-231 (390)
293 KOG2041 WD40 repeat protein [G 98.8 2E-07 4.2E-12 87.4 14.5 246 114-443 15-274 (1189)
294 KOG0309 Conserved WD40 repeat- 98.8 6E-08 1.3E-12 91.0 10.8 183 222-441 71-259 (1081)
295 PF08450 SGL: SMP-30/Gluconola 98.7 4.7E-05 1E-09 66.6 28.3 177 221-436 42-233 (246)
296 KOG1912 WD40 repeat protein [G 98.7 3.8E-06 8.1E-11 79.8 21.6 258 32-415 15-305 (1062)
297 KOG1832 HIV-1 Vpr-binding prot 98.7 1.8E-08 3.9E-13 96.3 5.9 199 30-366 1099-1300(1516)
298 PF15492 Nbas_N: Neuroblastoma 98.7 6.8E-06 1.5E-10 69.3 20.0 36 266-302 228-263 (282)
299 PF07433 DUF1513: Protein of u 98.7 9.1E-06 2E-10 70.6 21.0 115 216-354 160-283 (305)
300 PF00400 WD40: WD domain, G-be 98.7 3E-08 6.4E-13 58.7 3.6 31 30-60 9-39 (39)
301 KOG1832 HIV-1 Vpr-binding prot 98.6 5.1E-08 1.1E-12 93.3 5.4 191 112-416 1100-1293(1516)
302 KOG0882 Cyclophilin-related pe 98.6 4.2E-07 9.1E-12 80.6 10.4 225 108-423 4-239 (558)
303 TIGR03300 assembly_YfgL outer 98.6 3.9E-05 8.4E-10 71.9 24.6 154 231-429 191-352 (377)
304 PF07433 DUF1513: Protein of u 98.6 0.00011 2.3E-09 64.1 24.6 239 34-408 6-279 (305)
305 PF13360 PQQ_2: PQQ-like domai 98.6 5.7E-05 1.2E-09 65.7 23.6 156 230-417 76-233 (238)
306 PF11768 DUF3312: Protein of u 98.6 0.00011 2.3E-09 68.5 25.3 146 138-300 185-331 (545)
307 PF00400 WD40: WD domain, G-be 98.5 3.7E-07 8E-12 53.9 6.2 38 92-143 2-39 (39)
308 KOG2314 Translation initiation 98.5 6.8E-05 1.5E-09 68.8 22.8 277 116-444 213-509 (698)
309 KOG2066 Vacuolar assembly/sort 98.5 9.9E-06 2.1E-10 77.4 16.3 192 29-356 36-233 (846)
310 KOG2695 WD40 repeat protein [G 98.4 9.1E-07 2E-11 75.9 8.4 130 217-370 251-389 (425)
311 KOG2114 Vacuolar assembly/sort 98.4 6.3E-05 1.4E-09 72.7 21.2 131 217-370 124-257 (933)
312 KOG3621 WD40 repeat-containing 98.4 7.8E-05 1.7E-09 70.5 20.9 123 31-248 32-155 (726)
313 TIGR03300 assembly_YfgL outer 98.4 0.00021 4.6E-09 66.9 23.7 153 230-417 145-300 (377)
314 KOG1920 IkappaB kinase complex 98.3 0.00021 4.6E-09 71.8 23.1 115 270-416 198-324 (1265)
315 KOG1008 Uncharacterized conser 98.3 2.5E-07 5.3E-12 85.7 1.8 166 215-415 99-276 (783)
316 KOG2066 Vacuolar assembly/sort 98.2 0.00014 3E-09 69.9 18.5 149 227-414 80-233 (846)
317 COG0823 TolB Periplasmic compo 98.2 4.8E-05 1E-09 71.1 15.4 183 218-444 192-386 (425)
318 KOG1275 PAB-dependent poly(A) 98.2 6.7E-05 1.5E-09 72.9 14.6 148 221-412 180-340 (1118)
319 KOG2114 Vacuolar assembly/sort 98.1 0.00068 1.5E-08 65.9 21.1 178 221-430 68-259 (933)
320 KOG1920 IkappaB kinase complex 98.1 0.00043 9.3E-09 69.8 19.4 73 222-300 245-324 (1265)
321 KOG1645 RING-finger-containing 98.1 0.00059 1.3E-08 60.4 17.7 74 114-250 194-269 (463)
322 KOG1275 PAB-dependent poly(A) 98.1 0.00013 2.9E-09 71.0 14.6 152 115-355 179-341 (1118)
323 PRK02888 nitrous-oxide reducta 98.1 0.00094 2E-08 64.0 20.0 72 328-415 321-405 (635)
324 PF11768 DUF3312: Protein of u 98.0 0.00018 3.9E-09 67.1 14.7 72 327-416 259-331 (545)
325 PF06977 SdiA-regulated: SdiA- 98.0 0.007 1.5E-07 52.1 22.9 220 33-353 22-247 (248)
326 PF08596 Lgl_C: Lethal giant l 98.0 0.01 2.2E-07 55.2 25.5 279 34-413 3-334 (395)
327 KOG3621 WD40 repeat-containing 98.0 0.00021 4.5E-09 67.8 14.2 120 115-299 35-155 (726)
328 PF06977 SdiA-regulated: SdiA- 98.0 0.0082 1.8E-07 51.7 22.8 213 114-411 22-247 (248)
329 COG0823 TolB Periplasmic compo 98.0 0.00075 1.6E-08 63.2 17.6 171 222-436 241-422 (425)
330 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.016 3.4E-07 53.8 27.6 84 323-425 303-408 (415)
331 PRK11138 outer membrane biogen 97.9 0.0038 8.3E-08 58.8 21.9 105 281-424 257-362 (394)
332 PF04841 Vps16_N: Vps16, N-ter 97.9 0.023 5E-07 53.5 27.5 40 328-368 217-257 (410)
333 PF14583 Pectate_lyase22: Olig 97.9 0.0094 2E-07 54.0 21.8 167 217-414 186-381 (386)
334 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0092 2E-07 55.2 22.7 150 266-446 182-346 (353)
335 PF13360 PQQ_2: PQQ-like domai 97.8 0.014 3.1E-07 50.6 22.0 108 230-362 122-235 (238)
336 PRK02888 nitrous-oxide reducta 97.8 0.0068 1.5E-07 58.3 20.6 56 388-444 324-391 (635)
337 KOG1008 Uncharacterized conser 97.8 9.7E-06 2.1E-10 75.5 1.8 196 217-448 55-264 (783)
338 PF08596 Lgl_C: Lethal giant l 97.8 0.016 3.6E-07 53.8 22.7 273 115-442 3-321 (395)
339 PF06433 Me-amine-dh_H: Methyl 97.8 0.026 5.6E-07 50.3 25.5 259 119-424 41-329 (342)
340 PF08553 VID27: VID27 cytoplas 97.7 0.0013 2.8E-08 65.5 15.9 104 231-356 543-647 (794)
341 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.012 2.7E-07 54.4 21.8 211 218-444 42-297 (353)
342 PF04053 Coatomer_WDAD: Coatom 97.7 0.0042 9E-08 58.5 17.5 167 217-438 31-207 (443)
343 PRK11138 outer membrane biogen 97.6 0.019 4.2E-07 54.1 21.8 136 230-413 256-393 (394)
344 KOG3617 WD40 and TPR repeat-co 97.6 0.00097 2.1E-08 64.7 12.2 80 25-145 52-131 (1416)
345 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0083 1.8E-07 43.7 14.1 65 35-144 2-70 (111)
346 KOG1645 RING-finger-containing 97.6 0.00067 1.4E-08 60.1 9.9 97 322-435 188-289 (463)
347 PF04053 Coatomer_WDAD: Coatom 97.6 0.057 1.2E-06 51.1 23.4 147 230-416 117-264 (443)
348 PF03178 CPSF_A: CPSF A subuni 97.5 0.035 7.6E-07 50.7 21.5 116 216-356 86-202 (321)
349 COG3490 Uncharacterized protei 97.5 0.0052 1.1E-07 52.3 14.0 87 217-303 224-315 (366)
350 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.014 3E-07 42.6 13.5 64 218-293 42-109 (111)
351 KOG4640 Anaphase-promoting com 97.4 0.00089 1.9E-08 62.9 9.1 76 218-303 20-97 (665)
352 PF05694 SBP56: 56kDa selenium 97.3 0.11 2.4E-06 47.8 21.2 118 237-362 220-348 (461)
353 KOG4640 Anaphase-promoting com 97.3 0.0012 2.6E-08 62.1 9.0 93 328-436 21-114 (665)
354 smart00320 WD40 WD40 repeats. 97.3 0.00048 1E-08 39.6 4.2 30 31-60 11-40 (40)
355 KOG3617 WD40 and TPR repeat-co 97.3 0.00059 1.3E-08 66.2 6.3 111 268-414 16-131 (1416)
356 COG3386 Gluconolactonase [Carb 97.2 0.14 3E-06 45.9 22.3 127 220-370 112-255 (307)
357 cd00216 PQQ_DH Dehydrogenases 97.2 0.25 5.4E-06 48.0 26.7 29 395-424 405-433 (488)
358 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0017 3.6E-08 39.4 5.5 32 31-62 10-41 (47)
359 PF08553 VID27: VID27 cytoplas 97.1 0.015 3.2E-07 58.3 14.6 144 229-413 492-646 (794)
360 PF04841 Vps16_N: Vps16, N-ter 97.1 0.25 5.4E-06 46.7 25.0 50 388-438 220-270 (410)
361 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.5E-08 37.2 5.3 28 114-143 13-40 (40)
362 COG3391 Uncharacterized conser 97.1 0.24 5.3E-06 46.3 24.8 180 220-439 117-310 (381)
363 PF03178 CPSF_A: CPSF A subuni 97.1 0.12 2.5E-06 47.3 19.3 136 239-414 62-202 (321)
364 KOG2395 Protein involved in va 97.1 0.021 4.5E-07 53.0 13.7 101 234-356 398-500 (644)
365 PF00780 CNH: CNH domain; Int 97.0 0.21 4.5E-06 44.4 27.1 157 229-426 104-266 (275)
366 PF02897 Peptidase_S9_N: Proly 97.0 0.34 7.4E-06 46.1 27.4 33 34-66 125-162 (414)
367 COG3391 Uncharacterized conser 96.9 0.23 4.9E-06 46.5 20.1 180 221-445 76-270 (381)
368 PF14583 Pectate_lyase22: Olig 96.6 0.57 1.2E-05 42.8 19.6 155 224-418 86-276 (386)
369 PRK13616 lipoprotein LpqB; Pro 96.6 0.13 2.8E-06 50.8 16.1 187 219-438 350-551 (591)
370 KOG4649 PQQ (pyrrolo-quinoline 96.5 0.19 4.2E-06 42.5 14.4 113 276-424 19-132 (354)
371 PF02897 Peptidase_S9_N: Proly 96.5 0.83 1.8E-05 43.5 23.7 192 223-450 174-393 (414)
372 COG3204 Uncharacterized protei 96.4 0.54 1.2E-05 40.8 21.0 184 114-370 86-275 (316)
373 PF12894 Apc4_WD40: Anaphase-p 96.4 0.015 3.3E-07 35.3 5.5 30 114-145 12-41 (47)
374 PF06433 Me-amine-dh_H: Methyl 96.3 0.75 1.6E-05 41.3 20.4 162 223-416 40-215 (342)
375 COG3204 Uncharacterized protei 96.3 0.64 1.4E-05 40.4 18.4 172 32-300 85-265 (316)
376 PF00780 CNH: CNH domain; Int 96.2 0.56 1.2E-05 41.7 17.2 155 228-416 5-167 (275)
377 KOG2079 Vacuolar assembly/sort 96.1 0.029 6.3E-07 56.6 8.9 102 281-413 100-202 (1206)
378 KOG4649 PQQ (pyrrolo-quinoline 96.0 0.79 1.7E-05 39.0 19.5 66 229-303 62-128 (354)
379 PRK13616 lipoprotein LpqB; Pro 96.0 1.7 3.6E-05 43.2 20.5 125 221-360 399-529 (591)
380 PF10168 Nup88: Nuclear pore c 96.0 0.31 6.7E-06 49.1 15.4 96 328-424 85-189 (717)
381 KOG2444 WD40 repeat protein [G 95.9 0.027 5.9E-07 46.5 6.2 143 232-416 33-179 (238)
382 PF10647 Gmad1: Lipoprotein Lp 95.7 1.3 2.7E-05 38.8 16.5 70 220-290 113-187 (253)
383 KOG1897 Damage-specific DNA bi 95.7 2.9 6.3E-05 42.7 26.4 120 268-415 488-614 (1096)
384 KOG2395 Protein involved in va 95.6 0.12 2.7E-06 48.2 10.0 131 282-443 348-487 (644)
385 PF14870 PSII_BNR: Photosynthe 95.6 1.6 3.4E-05 39.1 22.9 171 229-438 114-286 (302)
386 PF10647 Gmad1: Lipoprotein Lp 95.3 1.3 2.9E-05 38.7 15.4 155 220-406 25-187 (253)
387 PF15390 DUF4613: Domain of un 95.3 2.4 5.2E-05 40.8 17.2 71 223-300 117-188 (671)
388 KOG2079 Vacuolar assembly/sort 95.3 0.05 1.1E-06 55.0 6.9 82 339-436 99-181 (1206)
389 PF12234 Rav1p_C: RAVE protein 95.3 0.32 6.9E-06 47.7 12.1 31 114-144 73-103 (631)
390 PF08728 CRT10: CRT10; InterP 95.2 1.7 3.7E-05 43.3 16.8 76 217-297 162-245 (717)
391 PF10313 DUF2415: Uncharacteri 95.1 0.094 2E-06 30.8 4.9 31 33-63 1-34 (43)
392 KOG3630 Nuclear pore complex, 95.0 0.35 7.7E-06 49.6 11.9 153 220-402 102-261 (1405)
393 PF07569 Hira: TUP1-like enhan 95.0 0.22 4.8E-06 42.3 9.2 79 275-357 18-96 (219)
394 PF15390 DUF4613: Domain of un 94.9 0.76 1.6E-05 43.9 12.9 156 219-413 20-185 (671)
395 KOG1916 Nuclear protein, conta 94.8 0.036 7.9E-07 54.8 4.4 67 222-298 184-265 (1283)
396 COG5167 VID27 Protein involved 94.7 3.8 8.3E-05 38.6 17.0 100 235-356 532-632 (776)
397 COG3490 Uncharacterized protei 94.7 2.6 5.7E-05 36.6 19.4 161 225-416 120-312 (366)
398 PF07995 GSDH: Glucose / Sorbo 94.7 3.4 7.4E-05 37.8 25.3 26 34-60 3-28 (331)
399 PF10313 DUF2415: Uncharacteri 94.7 0.14 3E-06 30.1 4.9 32 268-299 1-34 (43)
400 KOG2444 WD40 repeat protein [G 94.6 0.18 3.8E-06 41.9 7.3 65 230-302 70-136 (238)
401 COG3386 Gluconolactonase [Carb 94.5 3.6 7.7E-05 37.1 22.3 94 328-438 163-265 (307)
402 PF12234 Rav1p_C: RAVE protein 94.3 1.7 3.8E-05 42.8 14.5 74 217-298 71-156 (631)
403 PF14870 PSII_BNR: Photosynthe 94.3 3.9 8.4E-05 36.7 24.2 117 217-353 185-301 (302)
404 KOG4499 Ca2+-binding protein R 94.2 3 6.4E-05 35.1 18.2 141 220-394 110-263 (310)
405 KOG3630 Nuclear pore complex, 94.2 1.1 2.3E-05 46.4 12.8 102 220-344 157-260 (1405)
406 TIGR02604 Piru_Ver_Nterm putat 93.8 2.7 6E-05 39.1 14.6 109 220-344 15-140 (367)
407 TIGR02604 Piru_Ver_Nterm putat 93.6 6.2 0.00013 36.8 16.7 18 33-50 14-31 (367)
408 PF10168 Nup88: Nuclear pore c 93.5 9.7 0.00021 38.8 24.3 82 219-300 85-181 (717)
409 KOG1897 Damage-specific DNA bi 93.5 10 0.00022 39.0 24.1 182 218-437 530-724 (1096)
410 PF14761 HPS3_N: Hermansky-Pud 93.3 4.2 9.1E-05 34.0 15.6 78 267-355 134-213 (215)
411 PF08728 CRT10: CRT10; InterP 93.3 7.1 0.00015 39.2 16.6 166 230-413 49-245 (717)
412 TIGR03606 non_repeat_PQQ dehyd 92.8 9.1 0.0002 36.5 18.0 60 219-279 30-90 (454)
413 PRK13684 Ycf48-like protein; P 92.2 9.1 0.0002 35.1 28.6 158 218-412 172-329 (334)
414 KOG2377 Uncharacterized conser 92.2 6.7 0.00015 36.6 13.7 105 216-343 64-169 (657)
415 PF05694 SBP56: 56kDa selenium 92.1 5.6 0.00012 37.1 13.2 33 267-300 311-344 (461)
416 cd00216 PQQ_DH Dehydrogenases 92.0 13 0.00028 36.3 26.0 26 128-153 111-136 (488)
417 PRK13684 Ycf48-like protein; P 91.9 10 0.00022 34.9 17.3 118 217-355 213-330 (334)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 90.8 3.7 7.9E-05 38.6 11.1 79 215-301 304-401 (415)
419 PF07569 Hira: TUP1-like enhan 90.5 3 6.5E-05 35.5 9.6 31 217-247 65-95 (219)
420 KOG2280 Vacuolar assembly/sort 90.4 21 0.00045 35.8 15.8 87 195-294 65-151 (829)
421 KOG2247 WD40 repeat-containing 90.3 0.043 9.3E-07 50.6 -1.8 140 268-444 35-176 (615)
422 PF07995 GSDH: Glucose / Sorbo 90.1 8.9 0.00019 35.1 13.0 57 220-278 3-59 (331)
423 KOG1916 Nuclear protein, conta 89.9 0.39 8.4E-06 48.1 4.1 104 11-145 155-265 (1283)
424 PHA02713 hypothetical protein; 89.6 24 0.00051 35.2 16.4 20 338-357 512-534 (557)
425 PHA02713 hypothetical protein; 89.4 19 0.00041 35.8 15.5 22 395-416 512-535 (557)
426 COG4590 ABC-type uncharacteriz 89.3 13 0.00028 34.8 12.8 185 196-416 199-388 (733)
427 KOG2280 Vacuolar assembly/sort 89.1 26 0.00057 35.1 18.0 38 328-366 217-255 (829)
428 PF14761 HPS3_N: Hermansky-Pud 88.8 13 0.00028 31.2 15.9 30 218-247 134-163 (215)
429 TIGR03074 PQQ_membr_DH membran 88.3 34 0.00074 35.4 23.1 44 398-442 461-507 (764)
430 KOG1900 Nuclear pore complex, 87.7 6.8 0.00015 41.6 11.2 80 218-300 178-274 (1311)
431 PLN00033 photosystem II stabil 86.9 28 0.0006 32.8 17.6 155 221-411 241-396 (398)
432 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.6 35 0.00076 33.7 27.6 27 277-303 310-338 (527)
433 PF14781 BBS2_N: Ciliary BBSom 86.5 13 0.00028 28.5 13.5 80 36-148 2-84 (136)
434 KOG3616 Selective LIM binding 86.4 15 0.00033 36.6 12.1 34 32-65 14-47 (1636)
435 TIGR03118 PEPCTERM_chp_1 conse 85.4 26 0.00057 31.1 22.1 29 34-62 24-52 (336)
436 PF12657 TFIIIC_delta: Transcr 84.9 8.7 0.00019 31.3 8.8 31 269-299 87-122 (173)
437 TIGR03606 non_repeat_PQQ dehyd 84.9 37 0.00081 32.5 17.8 33 32-64 29-61 (454)
438 TIGR02276 beta_rpt_yvtn 40-res 84.5 4.9 0.00011 23.2 5.4 33 337-370 1-35 (42)
439 KOG2247 WD40 repeat-containing 84.2 0.19 4.2E-06 46.6 -1.3 100 220-346 76-178 (615)
440 KOG4441 Proteins containing BT 84.1 48 0.001 33.1 21.1 63 229-301 380-455 (571)
441 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.0 47 0.001 32.8 22.9 27 391-417 307-336 (527)
442 PF12657 TFIIIC_delta: Transcr 83.9 10 0.00022 30.9 8.7 29 387-415 88-122 (173)
443 KOG4460 Nuclear pore complex, 83.8 42 0.00092 32.2 14.4 83 268-357 104-199 (741)
444 TIGR02276 beta_rpt_yvtn 40-res 83.4 6.6 0.00014 22.6 5.8 31 394-425 1-32 (42)
445 COG5290 IkappaB kinase complex 82.6 59 0.0013 33.1 14.2 70 222-299 250-325 (1243)
446 PF05096 Glu_cyclase_2: Glutam 82.2 34 0.00073 29.9 19.5 181 218-440 44-243 (264)
447 KOG1900 Nuclear pore complex, 81.3 52 0.0011 35.5 14.1 173 223-415 83-273 (1311)
448 PRK10115 protease 2; Provision 81.1 70 0.0015 32.9 24.7 69 222-298 175-255 (686)
449 PLN00033 photosystem II stabil 80.7 52 0.0011 31.1 17.9 116 217-353 279-396 (398)
450 KOG4460 Nuclear pore complex, 79.9 49 0.0011 31.9 12.1 82 220-301 105-201 (741)
451 PF07676 PD40: WD40-like Beta 79.9 6.1 0.00013 22.5 4.5 29 31-59 7-38 (39)
452 PF03088 Str_synth: Strictosid 79.5 19 0.00042 25.4 8.0 43 287-347 34-76 (89)
453 PF12341 DUF3639: Protein of u 79.3 5.9 0.00013 20.7 3.6 26 33-60 2-27 (27)
454 PRK10115 protease 2; Provision 79.2 81 0.0018 32.4 29.1 33 33-65 127-164 (686)
455 PF11715 Nup160: Nucleoporin N 78.8 10 0.00022 37.6 8.4 74 228-302 156-252 (547)
456 PF13449 Phytase-like: Esteras 78.0 56 0.0012 29.9 17.4 170 219-401 20-231 (326)
457 KOG1983 Tomosyn and related SN 78.0 52 0.0011 35.3 13.4 24 393-416 243-266 (993)
458 PF08801 Nucleoporin_N: Nup133 76.6 57 0.0012 31.1 12.5 30 387-416 192-221 (422)
459 PF11715 Nup160: Nucleoporin N 76.1 19 0.0004 35.8 9.4 29 126-154 229-257 (547)
460 PHA03098 kelch-like protein; P 75.8 87 0.0019 31.0 17.5 23 278-301 437-467 (534)
461 PF07676 PD40: WD40-like Beta 75.3 11 0.00024 21.4 4.7 29 266-295 7-38 (39)
462 PF11635 Med16: Mediator compl 72.9 1.2E+02 0.0027 31.5 21.2 81 328-409 260-345 (753)
463 PF10214 Rrn6: RNA polymerase 72.9 1.3E+02 0.0027 31.5 22.3 74 219-300 204-278 (765)
464 COG5290 IkappaB kinase complex 72.4 1.2E+02 0.0026 31.1 14.3 73 268-356 247-324 (1243)
465 TIGR02171 Fb_sc_TIGR02171 Fibr 71.9 22 0.00048 36.7 8.5 54 388-441 353-412 (912)
466 PHA03098 kelch-like protein; P 71.4 1.1E+02 0.0024 30.3 18.5 22 395-416 487-513 (534)
467 PF03022 MRJP: Major royal jel 70.9 78 0.0017 28.3 19.3 131 219-357 61-216 (287)
468 PF14781 BBS2_N: Ciliary BBSom 70.5 47 0.001 25.6 11.7 70 273-357 4-82 (136)
469 PF13449 Phytase-like: Esteras 70.2 88 0.0019 28.6 18.5 69 216-285 144-231 (326)
470 KOG4499 Ca2+-binding protein R 69.8 70 0.0015 27.4 17.3 97 330-438 160-264 (310)
471 COG4257 Vgb Streptogramin lyas 69.3 80 0.0017 27.8 15.0 157 220-416 63-220 (353)
472 PF07250 Glyoxal_oxid_N: Glyox 67.4 83 0.0018 27.3 12.9 130 273-425 72-207 (243)
473 KOG1898 Splicing factor 3b, su 65.8 1.9E+02 0.0041 30.8 18.3 137 238-414 911-1048(1205)
474 KOG2377 Uncharacterized conser 65.5 1.3E+02 0.0028 28.7 19.2 120 113-300 66-187 (657)
475 KOG3522 Predicted guanine nucl 63.4 52 0.0011 33.6 8.9 74 266-357 625-698 (925)
476 PF02333 Phytase: Phytase; In 63.3 1.3E+02 0.0028 28.1 22.5 152 239-416 127-292 (381)
477 PF05096 Glu_cyclase_2: Glutam 63.3 1E+02 0.0023 27.0 21.5 200 114-404 45-251 (264)
478 COG5167 VID27 Protein involved 62.8 1.3E+02 0.0028 29.1 10.8 126 285-442 485-618 (776)
479 KOG4441 Proteins containing BT 62.4 1.8E+02 0.0038 29.2 18.9 69 223-301 327-407 (571)
480 smart00564 PQQ beta-propeller 60.6 22 0.00048 19.0 3.7 20 398-417 8-27 (33)
481 PF03022 MRJP: Major royal jel 60.2 1.3E+02 0.0028 27.0 21.8 154 240-415 35-216 (287)
482 PF14727 PHTB1_N: PTHB1 N-term 56.4 1.9E+02 0.004 27.6 26.8 59 231-299 146-205 (418)
483 COG4590 ABC-type uncharacteriz 56.1 1.6E+02 0.0035 28.0 10.1 29 220-248 359-387 (733)
484 PF14269 Arylsulfotran_2: Aryl 55.0 1.6E+02 0.0035 26.5 14.1 33 34-66 145-177 (299)
485 PF01731 Arylesterase: Arylest 54.9 38 0.00083 23.8 4.8 28 388-415 57-85 (86)
486 COG4257 Vgb Streptogramin lyas 53.9 1.6E+02 0.0034 26.1 19.3 150 220-416 105-264 (353)
487 PF13570 PQQ_3: PQQ-like domai 53.9 23 0.0005 20.2 3.2 21 395-415 20-40 (40)
488 PF01731 Arylesterase: Arylest 53.0 56 0.0012 22.9 5.4 28 329-356 55-84 (86)
489 TIGR02171 Fb_sc_TIGR02171 Fibr 52.5 1.1E+02 0.0025 31.9 9.4 46 327-372 349-401 (912)
490 KOG1983 Tomosyn and related SN 52.4 2.4E+02 0.0052 30.5 12.3 34 32-65 35-68 (993)
491 TIGR02608 delta_60_rpt delta-6 51.9 59 0.0013 20.5 4.8 31 34-64 2-37 (55)
492 PF01436 NHL: NHL repeat; Int 51.4 35 0.00075 17.8 4.8 25 270-295 4-28 (28)
493 PF14269 Arylsulfotran_2: Aryl 48.3 79 0.0017 28.5 7.1 75 329-414 145-220 (299)
494 COG4247 Phy 3-phytase (myo-ino 47.9 1.9E+02 0.0041 25.2 10.0 113 274-415 62-187 (364)
495 KOG1896 mRNA cleavage and poly 47.0 4.2E+02 0.0091 29.0 21.0 142 238-414 1064-1213(1366)
496 KOG3616 Selective LIM binding 45.8 47 0.001 33.5 5.4 67 218-296 14-81 (1636)
497 KOG1896 mRNA cleavage and poly 45.6 2.4E+02 0.0052 30.7 10.5 64 230-298 1148-1213(1366)
498 PHA02790 Kelch-like protein; P 44.7 3.1E+02 0.0067 26.8 17.7 22 395-416 446-472 (480)
499 KOG4659 Uncharacterized conser 43.9 4.9E+02 0.011 28.9 19.5 72 331-403 596-680 (1899)
500 COG5308 NUP170 Nuclear pore co 43.6 3.5E+02 0.0075 28.5 10.9 80 219-301 182-278 (1263)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-48 Score=326.04 Aligned_cols=321 Identities=16% Similarity=0.176 Sum_probs=266.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
-+|.++|.|++|+|+|..||+|+.|.++++||+.+.. +..+.++|.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---------------------------p~~t~KgH~------- 157 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET---------------------------PLFTCKGHK------- 157 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC---------------------------cceeecCCc-------
Confidence 3499999999999999999999999999999998776 446789999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.|++| +|||+.||+|+.||+|++||..+|+..-..-......|.+++|.+-+-..-+ ..+++
T Consensus 158 -----~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~-------r~las- 222 (480)
T KOG0271|consen 158 -----NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC-------RRLAS- 222 (480)
T ss_pred -----cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc-------cceec-
Confidence 88999999 8999999999999999999999887654443444556788888764321100 00111
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
-..++.++|||.. ..+++..+ .+|+.+|+|+.|--+| +|++| .|++|++|+.. .+.+.+. +++|.
T Consensus 223 -~skDg~vrIWd~~---~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~-------lkGHa 288 (480)
T KOG0271|consen 223 -SSKDGSVRIWDTK---LGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRE-------LKGHA 288 (480)
T ss_pred -ccCCCCEEEEEcc---CceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHh-------hcccc
Confidence 1246799999985 34566666 8999999999997544 88888 99999999998 5766654 78999
Q ss_pred CceEEEEEe-----------cCC------------------------ccEEEEEccCCeEEEEEccCCeeeccccccccc
Q 012721 268 EVITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (457)
Q Consensus 268 ~~i~~v~~~-----------p~~------------------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 312 (457)
..|+.++.+ |.+ +..|++|+.|.++.+|+....+.
T Consensus 289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk---------- 358 (480)
T KOG0271|consen 289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK---------- 358 (480)
T ss_pred hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----------
Confidence 999999876 223 13599999999999998765431
Q ss_pred cccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE
Q 012721 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (457)
Q Consensus 313 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (457)
....+.+|..-|+.+.||||++|||+++ |..|++||.++ ++.+.++++|-..+ +.++
T Consensus 359 ------pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Yqva 416 (480)
T KOG0271|consen 359 ------PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQVA 416 (480)
T ss_pred ------chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEEE
Confidence 1223577889999999999999999998 59999999997 99999999999876 7999
Q ss_pred EcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 392 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 392 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
|+.|.++|++|+.|.++++|++++. +...-+.||...|.++.|+|||.-.++|
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCCCceeecC
Confidence 9999999999999999999999998 7888899999999999999999988883
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-45 Score=313.91 Aligned_cols=280 Identities=20% Similarity=0.294 Sum_probs=248.9
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.-+.+|..+.|++|++.||||+-+|.+++|+..+.. .+.+|.||.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~-------- 217 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT-------- 217 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc--------
Confidence 357899999999999999999999999999998774 567899999
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.++.|+|-.++..+++|+.||++++|++.+...+..
T Consensus 218 ----~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~------------------------------------- 256 (459)
T KOG0272|consen 218 ----SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD------------------------------------- 256 (459)
T ss_pred ----cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh-------------------------------------
Confidence 889999997643577899999999999999987643322
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
+ .+|...|..++|+|+|++|+++ .|.+-++||+++..+.+. .++|..
T Consensus 257 -----------------------l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEGHs~ 304 (459)
T KOG0272|consen 257 -----------------------L-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEGHSK 304 (459)
T ss_pred -----------------------h-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hccccc
Confidence 1 6899999999999999999999 999999999995444432 589999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~ 347 (457)
.|.+++|+||| .++++|+.|..-+|||++++..+ .. +.+|...|.+|.|+|+|..||+|+ |
T Consensus 305 ~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~-------------L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 305 GVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MF-------------LAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ccceeEecCCC-ceeeccCccchhheeecccCcEE----EE-------------ecccccceeeEeECCCceEEeecCCC
Confidence 99999999999 99999999999999999999743 22 356889999999999999999986 5
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
++++|||+++ .+++.++.+|.+.+ +.+.|+| .|.+|+|++.|++++||.-.+. .+...+.||
T Consensus 367 nt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGH 429 (459)
T KOG0272|consen 367 NTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGH 429 (459)
T ss_pred CcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCC
Confidence 9999999997 77799999999987 6899999 6899999999999999999988 889999999
Q ss_pred CCcceeeeeccCCcceeccccccccccc
Q 012721 427 KNENRKPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
.+.|-++..+|++....+ ++.+|..|
T Consensus 430 e~kV~s~Dis~d~~~i~t--~s~DRT~K 455 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIAT--SSFDRTIK 455 (459)
T ss_pred ccceEEEEeccCCceEEE--eccCceee
Confidence 999999999999999998 88888765
No 3
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1e-43 Score=295.63 Aligned_cols=370 Identities=55% Similarity=0.888 Sum_probs=315.8
Q ss_pred cccccchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhccccccc
Q 012721 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (457)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (457)
.......|++.|+++.. ++..+-|.++.|..+|.+||||+.+|.|.++.-+....
T Consensus 5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-------------------- 59 (433)
T KOG1354|consen 5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-------------------- 59 (433)
T ss_pred Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc--------------------
Confidence 34567789999998863 55678999999999999999999999999998654432
Q ss_pred CCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeee
Q 012721 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (457)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 166 (457)
.+|.+...++.|++||+|+++++.+.+|+.+.|++..+...++..+.|.+|++|.+........ ......
T Consensus 60 --~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~~------- 129 (433)
T KOG1354|consen 60 --GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLPE------- 129 (433)
T ss_pred --cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-cccccc-------
Confidence 2788999999999999999999999999999999766778899999999999999876543320 000000
Q ss_pred ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEc
Q 012721 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNL 246 (457)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~ 246 (457)
.+ +.+....-..+.+-..+......|.+++..+|.-.|++++++.|++.+++++|-.|.+|++
T Consensus 130 ---~~--------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnl 192 (433)
T KOG1354|consen 130 ---EG--------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNL 192 (433)
T ss_pred ---cC--------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccc
Confidence 00 0000011112233333444556788888889999999999999999999999999999999
Q ss_pred CCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (457)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (457)
+...++..+++++|..++.....|++..|+|..+++++.++..|+|++-|+|...+++.+.++++. ++.|..+.+|.+-
T Consensus 193 ei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffsei 271 (433)
T KOG1354|consen 193 EIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEI 271 (433)
T ss_pred cccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHH
Confidence 999999999999999999999999999999998899999999999999999999999999999998 8889899999999
Q ss_pred ccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 327 ~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
...|..+.|+++|+||++-+.-+|++||+.+..+++..+..|......+|.+|++|++|+.+.++|+.++.+++||+..+
T Consensus 272 IsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n 351 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN 351 (433)
T ss_pred hhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCceeeEEecCCCc
Q 012721 407 LLRIFSHGVGSAGGITVEAGKNE 429 (457)
Q Consensus 407 ~i~iw~~~~~~~~~~~~~~~~~~ 429 (457)
.++++++..|.+...++++...+
T Consensus 352 ~frvf~~~~gsk~d~tl~asr~~ 374 (433)
T KOG1354|consen 352 VFRVFNLARGSKEDFTLEASRKN 374 (433)
T ss_pred eEEEecCCCCcceeecccccccC
Confidence 99999988887777777665544
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-42 Score=288.30 Aligned_cols=287 Identities=20% Similarity=0.298 Sum_probs=237.4
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
....|...|.|++|+|||+.||+|+.||+|++||..+++. ....|.+|.
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--------------------------~g~~l~gH~----- 200 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--------------------------IGRALRGHK----- 200 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--------------------------ccccccCcc-----
Confidence 4456999999999999999999999999999999998875 456789999
Q ss_pred cccccccCcEEEEEEEe---cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 107 LKSLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~---s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
..|++++|.| .|...+|++++.||.|+|||+..+.++..+..+. ..|+|+.|-- ..
T Consensus 201 -------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrwGG-------------~g 259 (480)
T KOG0271|consen 201 -------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRWGG-------------EG 259 (480)
T ss_pred -------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEEcC-------------Cc
Confidence 8999999976 3556799999999999999999888776655433 2355554421 11
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-----------CCC----------------------
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----------SDC---------------------- 230 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------~~~---------------------- 230 (457)
+++++. .+..|++|+... +.+.+.+ .+|...|+.++.+ |.+
T Consensus 260 liySgS--~DrtIkvw~a~d---G~~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 260 LIYSGS--QDRTIKVWRALD---GKLCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred eEEecC--CCceEEEEEccc---hhHHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 122221 356899999863 5677777 8999999999877 222
Q ss_pred ---CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccc
Q 012721 231 ---ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 306 (457)
Q Consensus 231 ---~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 306 (457)
+.|++| +|.++.+|+.....+++. .+.+|...|..+.|+||+ .++|+++.|..|++||.++++..
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~-------rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~l--- 402 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPIT-------RMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFL--- 402 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchh-------hhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchh---
Confidence 359999 999999999875555553 378999999999999999 99999999999999999998543
Q ss_pred cccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCcc
Q 012721 307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (457)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (457)
.. |.+|-..|+.++|+.|.++|++|+ |.++++||+++ .++...+.+|...+
T Consensus 403 -as-------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEV------------- 454 (480)
T KOG0271|consen 403 -AS-------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEV------------- 454 (480)
T ss_pred -hh-------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-eeecccCCCCCceE-------------
Confidence 22 566889999999999999999998 59999999997 88888899999876
Q ss_pred ccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 386 DKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 386 ~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
+++.|+|||..+++|+.|..+++|.
T Consensus 455 --f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 --FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --EEEEecCCCceeecCCCceEEEeec
Confidence 7999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=284.66 Aligned_cols=242 Identities=21% Similarity=0.335 Sum_probs=216.0
Q ss_pred CccccCCceEEEEECCC--CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 27 EELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~--~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
....|++.|.++.|+|. +.-||||+.||++++|++++.. .+..+.+|.
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---------------------------~l~~l~gH~--- 261 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---------------------------PLQDLEGHL--- 261 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---------------------------chhhhhcch---
Confidence 44569999999999996 6789999999999999998765 456889999
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..|..++| +|+|++|+|++.|.+-++||++++.....
T Consensus 262 ---------~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~ElL~-------------------------------- 298 (459)
T KOG0272|consen 262 ---------ARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSELLL-------------------------------- 298 (459)
T ss_pred ---------hhheeeee--cCCCceeeecccccchhhcccccchhhHh--------------------------------
Confidence 88999999 68999999999999999999998754332
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..+|...|.+++|+|||.++++| .|..-+|||++ .+.++.. +
T Consensus 299 -----------------------------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~-------L 341 (459)
T KOG0272|consen 299 -----------------------------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMF-------L 341 (459)
T ss_pred -----------------------------hcccccccceeEecCCCceeeccCccchhheeecc-cCcEEEE-------e
Confidence 16999999999999999999999 99999999999 6777755 6
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHL 342 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l 342 (457)
.+|...|.+|+|+|+| ..||+|+.|++++|||++..+.. .+ +.+|..-|+.|+|+| .|.+|
T Consensus 342 ~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~l----y~-------------ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSEL----YT-------------IPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred cccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccc----ee-------------cccccchhhheEecccCCeEE
Confidence 8999999999999999 99999999999999999987542 22 356788999999999 68899
Q ss_pred EEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 343 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 343 ~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
++++. +++++|..+. ..+++++.+|++.+ .++++++|+.+|+|++.|+++++|.
T Consensus 404 ~TasyD~t~kiWs~~~-~~~~ksLaGHe~kV---------------~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRT-WSPLKSLAGHEGKV---------------ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCC-cccchhhcCCccce---------------EEEEeccCCceEEEeccCceeeecc
Confidence 99885 9999999985 89999999999976 7999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=257.73 Aligned_cols=279 Identities=13% Similarity=0.211 Sum_probs=233.5
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|.+.|+++.|++|.++|++++.||.+.|||.-+..+. ..+.-..
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s------ 97 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS------ 97 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc------
Confidence 4469999999999999999999999999999998766542 2222233
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|...+| +|+|+++++|+.|+...||++.+.+..-.
T Consensus 98 ------~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~----------------------------------- 134 (343)
T KOG0286|consen 98 ------SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGN----------------------------------- 134 (343)
T ss_pred ------eeEEEEEE--CCCCCeEEecCcCceeEEEeccccccccc-----------------------------------
Confidence 67999999 78999999999999999999885421100
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+..+. +.+|.+.+.|+.|-+|+ .|+++ .|.++.+||++ .++..+. +.+|
T Consensus 135 -------------------~~v~r~-l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie-~g~~~~~-------f~GH 185 (343)
T KOG0286|consen 135 -------------------VRVSRE-LAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE-TGQQTQV-------FHGH 185 (343)
T ss_pred -------------------ceeeee-ecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc-cceEEEE-------ecCC
Confidence 011111 27999999999998755 56666 99999999999 6766655 7899
Q ss_pred CCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 267 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 267 ~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
.+.|.+++++| ++ +.+++|+-|+..+|||+|.+... + .|.+|.+.|++++|.|+|.-+++|
T Consensus 186 ~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c~----q-------------tF~ghesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQCV----Q-------------TFEGHESDINSVRFFPSGDAFATG 247 (343)
T ss_pred cccEEEEecCCCCC-CeEEecccccceeeeeccCccee----E-------------eecccccccceEEEccCCCeeeec
Confidence 99999999999 66 99999999999999999997533 3 356688999999999999999999
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
+| ++.++||++. .+.+..+. |+. .+++|++++||..|++|++|-.|.++.+||.-.+ +....+.
T Consensus 248 SDD~tcRlyDlRa-D~~~a~ys-~~~------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~ 312 (343)
T KOG0286|consen 248 SDDATCRLYDLRA-DQELAVYS-HDS------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA 312 (343)
T ss_pred CCCceeEEEeecC-CcEEeeec-cCc------------ccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee
Confidence 87 9999999996 77777776 333 2345689999999999999999999999999888 6788899
Q ss_pred cCCCcceeeeeccCCcceec
Q 012721 425 AGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~~~ 444 (457)
+|...|.++..+|||.+..+
T Consensus 313 GHeNRvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVAT 332 (343)
T ss_pred ccCCeeEEEEECCCCcEEEe
Confidence 99999999999999999988
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-38 Score=253.66 Aligned_cols=300 Identities=16% Similarity=0.205 Sum_probs=238.4
Q ss_pred CCccccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 26 DEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
+....|++.|+.++..+. .+.|++++.|.++.+|++...... .....+.|.||+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs--- 63 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS--- 63 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc---
Confidence 345569999999999986 578999999999999999876542 445678899999
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..|..+.. +++|++.++++.|+++++||+.+++..+.+..+. ..|.+++|++.+..++....
T Consensus 64 ---------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-~dVlsva~s~dn~qivSGSr------ 125 (315)
T KOG0279|consen 64 ---------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHT-KDVLSVAFSTDNRQIVSGSR------ 125 (315)
T ss_pred ---------eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecC-CceEEEEecCCCceeecCCC------
Confidence 67999999 7999999999999999999999997666655443 45899999988887777665
Q ss_pred ccCCccccccceEEEeccCccccccceeecc-CCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
+..+++|+.-. .|..+... .+.+.|+|+.|+|+ ..+|+++ .|++|++||++ +-+...
T Consensus 126 --------DkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~------ 186 (315)
T KOG0279|consen 126 --------DKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT------ 186 (315)
T ss_pred --------cceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh------
Confidence 67899999853 34433322 23788999999997 6788888 99999999999 444333
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
.+.+|++.++.++++||| .++++|+.||.+.+||++.++.+ ..++ |...|.+++|+|+.-
T Consensus 187 -~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~--------------a~~~v~sl~fspnry 246 (315)
T KOG0279|consen 187 -TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLE--------------AFDIVNSLCFSPNRY 246 (315)
T ss_pred -ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----Eecc--------------CCCeEeeEEecCCce
Confidence 378899999999999999 99999999999999999998653 3333 357899999999998
Q ss_pred eEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 341 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 341 ~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
.|+.+.+..|+|||+++ +..+..++....... ...-++.| ++++|++||..|++|-.|+.|++|.+.
T Consensus 247 wL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~s--~~~~~~~c----lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 247 WLCAATATSIKIWDLES-KAVVEELKLDGIGPS--SKAGDPIC----LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEeeccCCceEEEeccc-hhhhhhccccccccc--cccCCcEE----EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88888888899999986 666666543221110 00000011 689999999999999999999999975
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5e-38 Score=257.17 Aligned_cols=286 Identities=17% Similarity=0.262 Sum_probs=237.9
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|+.+.|+|+|.+||+|+.|..|.+|++....+ ....+++|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs------- 90 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS------- 90 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc-------
Confidence 34899999999999999999999999999999876654 456678999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
++|..+.| ..+++.+++++.|++|+.||+++|+....
T Consensus 91 -----gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk------------------------------------ 127 (338)
T KOG0265|consen 91 -----GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK------------------------------------ 127 (338)
T ss_pred -----ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh------------------------------------
Confidence 99999999 78999999999999999999999876532
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
+ ++|..-|+++.-+.-|..++ ++ .|+++++||++ .+.+++++ ..
T Consensus 128 ------------------------~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t~--------~~ 173 (338)
T KOG0265|consen 128 ------------------------H-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKTF--------EN 173 (338)
T ss_pred ------------------------h-ccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhcc--------cc
Confidence 1 68888899988665565555 56 99999999999 66666653 23
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...++++.|...+ ..+.+|+-|+.|++||++.+... .+ +.||...|+.+..+|+|.++.+-+
T Consensus 174 kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----~~-------------lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 174 KYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----YT-------------LSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred ceeEEEEEecccc-cceeeccccCceeeeccccCcce----EE-------------eecccCceeeEEeccCCCcccccc
Confidence 4679999999998 89999999999999999886533 22 456889999999999999999976
Q ss_pred -cCcEEEEeccC---CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721 347 -YMNLKLWDIRM---DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 347 -~~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~ 422 (457)
|.++++||++. ..+++..+.+|....... ...++|+|++.++.+|+.|..+++||..+. ..+..
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfekn-----------lL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lyk 303 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN-----------LLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYK 303 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeecchhhhhhh-----------cceeeccCCCCccccccccceEEEeecccc-cEEEE
Confidence 59999999975 234477777766543211 158999999999999999999999998876 78999
Q ss_pred EecCCCcceeeeeccCCcceeccccccccccccC
Q 012721 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ 456 (457)
Q Consensus 423 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 456 (457)
+.||.+.|+++.|||..|...+ ..+++..+-|
T Consensus 304 lpGh~gsvn~~~Fhp~e~iils--~~sdk~i~lg 335 (338)
T KOG0265|consen 304 LPGHYGSVNEVDFHPTEPIILS--CSSDKTIYLG 335 (338)
T ss_pred cCCcceeEEEeeecCCCcEEEE--eccCceeEee
Confidence 9999999999999999999988 6666666543
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=245.49 Aligned_cols=271 Identities=17% Similarity=0.260 Sum_probs=226.3
Q ss_pred cccC-CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDV-DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~-~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
++|. ..|..+...|+++.||+|+.. .|++||+.+.... ++.++.+|.
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------------------------Pv~t~e~h~------ 83 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------------------------PVATFEGHT------ 83 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-------------------------ceeEEeccC------
Confidence 4564 579999999999999999875 6999999988753 778999998
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+|.| ..+|..+++|++||+++|||++.-.+.+.
T Consensus 84 ------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~----------------------------------- 120 (311)
T KOG0315|consen 84 ------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRN----------------------------------- 120 (311)
T ss_pred ------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchh-----------------------------------
Confidence 78999999 68999999999999999999987433322
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..|..+|+++..+|+...|++| .+|.|++||+. ...+...+ +.+-
T Consensus 121 ---------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~ 166 (311)
T KOG0315|consen 121 ---------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPED 166 (311)
T ss_pred ---------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCC
Confidence 3567899999999999999999 99999999998 44333322 3445
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...|.++...|+| .+++.+...|...+|++...... . ...+...+..|++.+..+.+|||++|||+++
T Consensus 167 ~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s-------~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 167 DTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----S-------ELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred CcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcc----c-------cceEhhheecccceEEEEEECCCCcEEEeec
Confidence 5789999999999 99999999999999999874221 1 1112334788999999999999999999876
Q ss_pred -cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 347 -~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
|.+++||+.+..-+....+.+|...+ ..++||.||.||++|+.|+.+++|++.++ +......+
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~g 298 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQG 298 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccC-ceeeecCC
Confidence 59999999986436667788888776 79999999999999999999999999999 67788999
Q ss_pred CCCcceeeeec
Q 012721 426 GKNENRKPILQ 436 (457)
Q Consensus 426 ~~~~v~~~~~~ 436 (457)
|..+..+++.+
T Consensus 299 h~K~~vc~~ln 309 (311)
T KOG0315|consen 299 HHKAAVCVALN 309 (311)
T ss_pred cccccEEEEee
Confidence 99988888765
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-36 Score=263.18 Aligned_cols=334 Identities=19% Similarity=0.279 Sum_probs=250.3
Q ss_pred cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (457)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (457)
..+++|+..+++ |..-|.|+.|+|||.++|+++.||+|.|||-.++++
T Consensus 177 GPPFKFk~s~r~--------HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------------------------ 224 (603)
T KOG0318|consen 177 GPPFKFKSSFRE--------HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------------------------ 224 (603)
T ss_pred CCCeeeeecccc--------cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE------------------------
Confidence 445777777776 999999999999999999999999999999888874
Q ss_pred cceeeeec---cCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCC---Cceeee
Q 012721 91 YRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF---PFVSSE 164 (457)
Q Consensus 91 ~~~~~~~~---~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~---~~~~~~ 164 (457)
+..|. +|. +.|.+++| +||++.|++++.|.++++||+.+.++...+.+... +.+-++
T Consensus 225 ---vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 225 ---VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ---EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 34455 666 99999999 79999999999999999999999988776654432 111111
Q ss_pred eeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEE
Q 012721 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 243 (457)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~i 243 (457)
|. ++.++... .++.+.+++.+... .++++ .+|...|+++..+|++++|++| .||.|.-
T Consensus 288 -Wq--kd~lItVS--------------l~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 288 -WQ--KDHLITVS--------------LSGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred -Ee--CCeEEEEE--------------cCcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 11 22222222 23455555554332 44544 8999999999999999999999 9999999
Q ss_pred EEcCCCcce------------------------------eeeeecC---------------CCc----------------
Q 012721 244 WNLEISDQC------------------------------FNIVDMK---------------PSN---------------- 262 (457)
Q Consensus 244 wd~~~~~~~------------------------------~~~~~~~---------------~~~---------------- 262 (457)
|+....... ++.+..+ |..
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 998641100 0001000 000
Q ss_pred ----cc--------CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721 263 ----MD--------DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (457)
Q Consensus 263 ----~~--------~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 330 (457)
+. .-.....+++++|++ ..++.|+.||.|++|.+....+.. ......|.++|
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~e---------------e~~~~~h~a~i 490 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKE---------------EAKLLEHRAAI 490 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccc---------------eeeeecccCCc
Confidence 00 011234678899999 999999999999999998865321 01134578999
Q ss_pred EEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEE
Q 012721 331 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 409 (457)
++++||||+.|||+++. +.+.+||..........+.-|...+ .+++|+|+..++|+|+-|-.|.
T Consensus 491 T~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI---------------~~~aWsP~n~~vATGSlDt~Vi 555 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI---------------NCVAWSPNNKLVATGSLDTNVI 555 (603)
T ss_pred eEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE---------------EEEEeCCCceEEEeccccceEE
Confidence 99999999999999987 9999999986333344455577765 6999999999999999999999
Q ss_pred EEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 410 iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
||+++...+......+|...|+.+.|-.+..-..+|
T Consensus 556 iysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG 591 (603)
T KOG0318|consen 556 IYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSG 591 (603)
T ss_pred EEEccChhhheEeccccccCceeEEEecCceEEecc
Confidence 999998877788888999999999998776555553
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-37 Score=285.87 Aligned_cols=268 Identities=21% Similarity=0.298 Sum_probs=218.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccc-hhhhhhcccccc--cCC-CccceeeeeccCCcccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHIS-RSELEKQMDFTS--TSH-PEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~~~~~~h~~~~~~~ 107 (457)
...++|..|++|+.+||.|-.|..|++|.+...+..++.+.. ...+......+. ..- .+.....++.||.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 568999999999999999999999999999854432221111 111111111110 000 0122344578888
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
++|....| +|+.++|+++|+|+++|+|.+.+......
T Consensus 452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~V~----------------------------------- 488 (707)
T KOG0263|consen 452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCLVI----------------------------------- 488 (707)
T ss_pred ------Cceeeeee--cccccceeeccCCcceeeeecccceeEEE-----------------------------------
Confidence 99999999 78999999999999999999988654432
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
+ .+|..+|+.+.|+|.|-+||++ .|++.++|... .....++ +.+|
T Consensus 489 -------------------------y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fagh 534 (707)
T KOG0263|consen 489 -------------------------Y-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FAGH 534 (707)
T ss_pred -------------------------e-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hccc
Confidence 2 6899999999999999999999 99999999998 5556655 6899
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.+.|.|+.|+|+. .++++||.|.+||+||+.++... ++| .||.++|.+++|||+|++|++|+
T Consensus 535 lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----RiF-------------~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 535 LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----RIF-------------TGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred ccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----EEe-------------cCCCCceEEEEEcCCCceEeecc
Confidence 9999999999999 99999999999999999998543 444 55889999999999999999998
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+ +.|.+||+.. ++++..+.+|.+.+ .++.||.||..||+|+.|++|++||+...
T Consensus 597 ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 6 9999999985 89999999997765 69999999999999999999999998654
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=255.60 Aligned_cols=272 Identities=16% Similarity=0.222 Sum_probs=240.9
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.+|..+|+.+-|+|+-.+++++++|++|++||..+++ +...++||.
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~---------------------------~e~~LrGHt------- 150 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE---------------------------LERSLRGHT------- 150 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchh---------------------------hhhhhhccc-------
Confidence 4588999999999999999999999999999999876 457899999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.+|.+|+| +..|.++++++.|-.+++||..+.
T Consensus 151 -----~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~----------------------------------------- 182 (406)
T KOG0295|consen 151 -----DSVFDISF--DASGKYLATCSSDLSAKLWDFDTF----------------------------------------- 182 (406)
T ss_pred -----cceeEEEE--ecCccEEEecCCccchhheeHHHH-----------------------------------------
Confidence 78999999 688999999999999999998763
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.+|++.. .+|...|.++.|-|.|.+++++ .|.+|+.|++. .+.++.+ +.+|.
T Consensus 183 ------------------~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t-------~~~h~ 235 (406)
T KOG0295|consen 183 ------------------FRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKT-------FPGHS 235 (406)
T ss_pred ------------------HHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEe-------ccCch
Confidence 1344433 7899999999999999999999 99999999999 7777766 78999
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---------
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 338 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--------- 338 (457)
+.+..+..+.|| .++++++.|.+|++|-+.+++.. .. +.+|.-+|-+++|.|.
T Consensus 236 ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~-------------lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 236 EWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AE-------------LREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred HhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hh-------------hhccccceEEEEecccccCcchhhc
Confidence 999999999999 99999999999999999887422 22 3456678888888763
Q ss_pred ------CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721 339 ------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 339 ------g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw 411 (457)
++++++++ |++|++||+.+ +.++.++.+|.+.+ ..++|+|.|+||+++.+|+++++|
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEE
Confidence 35888887 59999999987 89999999999987 689999999999999999999999
Q ss_pred ecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|++++ ++..++++|..-++++.|+-+.|...+
T Consensus 362 dl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 362 DLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred Eeccc-eeeeccCCCcceeEEEecCCCCceEEe
Confidence 99999 889999999999999999999998877
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=264.10 Aligned_cols=277 Identities=19% Similarity=0.304 Sum_probs=235.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...|..|.|.|+|+.|++|+..|.+.+|+...- .+...++.|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------nFEtilQaHD---------- 138 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------NFETILQAHD---------- 138 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------eHHHHhhhhc----------
Confidence 348999999999999999999999999997432 3455678898
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
.+|.++.| ++++..+++|+.+|.|++|+..-...+..
T Consensus 139 --s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~--------------------------------------- 175 (464)
T KOG0284|consen 139 --SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKII--------------------------------------- 175 (464)
T ss_pred --ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHh---------------------------------------
Confidence 89999999 78999999999999999999765432211
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
...|...|++++|+|+...|++| +||+|+|||.....+.. + +.+|...|
T Consensus 176 ----------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-v-------L~GHgwdV 225 (464)
T KOG0284|consen 176 ----------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-V-------LRGHGWDV 225 (464)
T ss_pred ----------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-e-------eccCCCCc
Confidence 03455899999999999999999 99999999998433322 2 68999999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~ 349 (457)
.+++|+|.. .+|++|+.|..|++||.+++.++ .. +.+|...|..+.|+|++.+|++++ |..
T Consensus 226 ksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~t-------------lh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 226 KSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----AT-------------LHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred ceeccCCcc-ceeEEccCCceeEeecCCCcchh----hh-------------hhhccceEEEEEEcCCCCeeEEccCCce
Confidence 999999998 99999999999999999998654 22 345778999999999999999998 499
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
++++|+++ .+.+.++++|...+ +++.|+|- ..++.+|+.||.|..|.+...+.....-.+|..
T Consensus 288 ~kv~DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 288 CKVFDIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred EEEEehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence 99999995 78899999999865 79999994 678889999999999999966566777789999
Q ss_pred cceeeeeccCCcceeccccccccccc
Q 012721 429 ENRKPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 429 ~v~~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
.|++++|||-|...++ ++-+|..|
T Consensus 352 ~iwsl~~hPlGhil~t--gsnd~t~r 375 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILAT--GSNDRTVR 375 (464)
T ss_pred ceeeeeccccceeEee--cCCCccee
Confidence 9999999999999998 66666554
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-35 Score=255.19 Aligned_cols=278 Identities=17% Similarity=0.317 Sum_probs=229.0
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.....|++++|+.+|.+||+|+.||.++||+..+.. +.+|..|.
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------------------------~~tl~~Hk-------- 276 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------------------------ISTLGQHK-------- 276 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------------------------hhhhhccC--------
Confidence 346789999999999999999999999999987654 35778888
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
++|.++.| +..|++|++++.|+++.+||..++.......+...+ .-+ +.+..+..
T Consensus 277 ----gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-~lD------------------VdW~~~~~ 331 (524)
T KOG0273|consen 277 ----GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-ALD------------------VDWQSNDE 331 (524)
T ss_pred ----CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-ccc------------------eEEecCce
Confidence 99999999 789999999999999999999999888776654322 011 22223333
Q ss_pred cc---cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 190 WT---ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 190 ~~---~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
|+ .++.++++.+... .+.+++ .+|.++|.++.|+|.+.+|+++ +|++++||.+. ...+.. .+.+
T Consensus 332 F~ts~td~~i~V~kv~~~---~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~-------~l~~ 399 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGED---RPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVH-------DLQA 399 (524)
T ss_pred EeecCCCceEEEEEecCC---Ccceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchh-------hhhh
Confidence 32 2446888877543 566666 7899999999999999999999 99999999987 454443 3788
Q ss_pred CCCceEEEEEecCCc--------cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 266 LTEVITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~--------~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
|...|..+.|+|.|+ ..+++++.|++|++||+..+... .. |..|..+|++++|+|
T Consensus 400 Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~-------------f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 400 HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HT-------------LMKHQEPVYSVAFSP 462 (524)
T ss_pred hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----Ee-------------eccCCCceEEEEecC
Confidence 999999999999863 37899999999999999987543 22 456789999999999
Q ss_pred CCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 338 ~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+|+|+|+|+ ||.|.+|+.++ ++.++.+.+.... +.++|+.+|.+|..+-.|+.+++-|++
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCcEEEecCCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999998 59999999986 8888888876653 589999999999999999999999875
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=240.57 Aligned_cols=244 Identities=24% Similarity=0.414 Sum_probs=211.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...|..++|+|.|+++|.|+-|+...||++.+.+.. ...+..+++.+|.
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHt---------- 145 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHT---------- 145 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---------------------ccceeeeeecCcc----------
Confidence 678999999999999999999999999999855321 1223556799999
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
+-+.+..|. +..+|+++|.|.+..+||+++++....+
T Consensus 146 --gylScC~f~---dD~~ilT~SGD~TCalWDie~g~~~~~f-------------------------------------- 182 (343)
T KOG0286|consen 146 --GYLSCCRFL---DDNHILTGSGDMTCALWDIETGQQTQVF-------------------------------------- 182 (343)
T ss_pred --ceeEEEEEc---CCCceEecCCCceEEEEEcccceEEEEe--------------------------------------
Confidence 779999994 4669999999999999999998765542
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+|.+.|.+++++| +++.+++| .|+..++||++ .+.+.+. +.+|...
T Consensus 183 -----------------------~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qt-------F~ghesD 231 (343)
T KOG0286|consen 183 -----------------------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQT-------FEGHESD 231 (343)
T ss_pred -----------------------cCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEe-------ecccccc
Confidence 69999999999999 99999999 99999999999 6777776 7999999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
|.+++|.|+| .-|++|+.|++.++||+|..+.. .++.. ..-..+|++++||..|++|++|- |.
T Consensus 232 INsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~----a~ys~-----------~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 232 INSVRFFPSG-DAFATGSDDATCRLYDLRADQEL----AVYSH-----------DSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred cceEEEccCC-CeeeecCCCceeEEEeecCCcEE----eeecc-----------CcccCCceeEEEcccccEEEeeecCC
Confidence 9999999999 99999999999999999997654 44433 11246899999999999999974 59
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
++.+||.-. ++.+..+.+|++.+ .++..+|||.-+++|+.|.+++||.
T Consensus 296 ~c~vWDtlk-~e~vg~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 296 TCNVWDTLK-GERVGVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEeeccc-cceEEEeeccCCee---------------EEEEECCCCcEEEecchhHheeecC
Confidence 999999964 78888999999987 6899999999999999999999994
No 16
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=250.86 Aligned_cols=361 Identities=49% Similarity=0.786 Sum_probs=297.1
Q ss_pred cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (457)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (457)
...|+++|.|+.+.........+.|+++.|...|.|||+|...|.|.+|.-+...- | +
T Consensus 5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~---------------c-------e 62 (460)
T COG5170 5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG---------------C-------E 62 (460)
T ss_pred hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccc---------------c-------c
Confidence 45699999999988888888899999999999999999999999999998654432 2 7
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
|++.++|++|+.||+|+++++.+..|+.+.|+....-..++..+.|++|++|.+.......+..-+... +|..+.
T Consensus 63 ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~-----~~~~~~ 137 (460)
T COG5170 63 YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD-----SFHSPM 137 (460)
T ss_pred hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc-----cccccc
Confidence 889999999999999999999999999999984344567888899999999999876544332222111 111111
Q ss_pred ccccccCCCCCceeccCCccccccceEEEecc---CccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcC
Q 012721 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVG---NSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~ 247 (457)
+..+. +...+++-.+. ..-...+.+++...|.-.|++++++.|.+.+++++|-.|.+|+++
T Consensus 138 ~g~~~----------------s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~ 201 (460)
T COG5170 138 GGPLT----------------STKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLE 201 (460)
T ss_pred CCCcC----------------CHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeecccc
Confidence 11100 00011111111 111223344455789999999999999999999999999999999
Q ss_pred CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
....+..+++++|..++.....|++..|+|..++.+..++..|.|++-|+|...+++...+++.. ...+.....+.+-.
T Consensus 202 i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eiv 280 (460)
T COG5170 202 IIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIV 280 (460)
T ss_pred ccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHh
Confidence 88999999999999998889999999999988789999999999999999999888888788877 66677777788888
Q ss_pred cceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 407 (457)
+.|..+.|+++|+||++.+.-+|++||.++...++.++..|......+++.|++|++|+.+.+.||.|...+++|+..+.
T Consensus 281 sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NN 360 (460)
T COG5170 281 SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNN 360 (460)
T ss_pred hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccc
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999998
Q ss_pred EEEEecCC
Q 012721 408 LRIFSHGV 415 (457)
Q Consensus 408 i~iw~~~~ 415 (457)
.-++-..+
T Consensus 361 fgiyp~~s 368 (460)
T COG5170 361 FGIYPTDS 368 (460)
T ss_pred eeeecccc
Confidence 88888554
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-35 Score=232.61 Aligned_cols=274 Identities=18% Similarity=0.273 Sum_probs=233.3
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.++|.++.|+-||+|.++++.|.+|++|+...+. ++.++.+|.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG-------- 59 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG-------- 59 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC--------
Confidence 378999999999999999999999999999987665 678899998
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|..++. +.|+..|++|+.|+.+.+||+.+|+..+.+
T Consensus 60 ----~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~------------------------------------ 97 (307)
T KOG0316|consen 60 ----HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRRF------------------------------------ 97 (307)
T ss_pred ----ceeeeccc--cccccccccCCCCceEEEEEcccCeeeeec------------------------------------
Confidence 55999988 678889999999999999999999765432
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcccCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 267 (457)
.+|.+.|+.++|+.+...+++| .|.++++||.+.. .+++++ +....
T Consensus 98 -------------------------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~ 145 (307)
T KOG0316|consen 98 -------------------------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAK 145 (307)
T ss_pred -------------------------ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhc
Confidence 6899999999999999999999 9999999999843 244544 45566
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
..|.++..+. ..|+.|+.||+++.||++.+.+.. -+ ...+|++++|+++++..++++
T Consensus 146 D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy---------------~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 146 DGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DY---------------FGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred CceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hh---------------cCCcceeEEecCCCCEEEEeec
Confidence 7888888775 569999999999999999986431 11 135899999999999988887
Q ss_pred cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
++++++.|-.+ ++++..+++|.+...+ +.++++.....+++|++||.|++||+... ..+..++.+
T Consensus 204 ~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~ 268 (307)
T KOG0316|consen 204 DSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVV 268 (307)
T ss_pred cceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEeccc-eeeeeeccC
Confidence 59999999987 9999999999876533 47888888899999999999999999988 778888888
Q ss_pred CCc-ceeeeeccCCcceecccccc
Q 012721 427 KNE-NRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 427 ~~~-v~~~~~~p~~~~~~~~~~~~ 449 (457)
..+ +..+.+||..+......+..
T Consensus 269 ~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 269 STVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred CceeEEeeecccCccceeEecCCc
Confidence 888 89999999988776654433
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-34 Score=258.71 Aligned_cols=332 Identities=17% Similarity=0.221 Sum_probs=256.7
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|.+.|.++.|+.|.++|++|+.|-+++||.++..+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-------------------------~~~~l~gHk------ 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-------------------------FTYALNGHK------ 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-------------------------ceEeccCCC------
Confidence 4568999999999999999999999999999999876643 456788999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc------------------------cc------eeEEEeecC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD------------------------QK------VKKIKEMDH 157 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~------------------------~~------~~~~~~~~~ 157 (457)
+.|.+.-| ..+...+++.+.||.+.+|.... .+ .......-.
T Consensus 190 ------d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 190 ------DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred ------cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 78888888 67888899999999999998761 11 011111111
Q ss_pred C---CceeeeeeccccccccccCCC------------------------CCceeccCCcccc-----ccceEEEeccCcc
Q 012721 158 F---PFVSSENTLLAEKNFMNEHNP------------------------PSFAHGYHLEWTE-----NMATKIANVGNSV 205 (457)
Q Consensus 158 ~---~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-----~~~i~~~~~~~~~ 205 (457)
. ..+++.+|++....+...... ..+.+...|.|.. -+.+.+|+++.+
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE- 340 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE- 340 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-
Confidence 1 346666666553322211110 1223334455522 227888988643
Q ss_pred ccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (457)
Q Consensus 206 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 284 (457)
..+... ++|...+++++++|||+++++| .||.|+|||.. .+-|+.+ +..|+..|+.+.|+..| +.++
T Consensus 341 --sYVlKQ-QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vT-------FteHts~Vt~v~f~~~g-~~ll 408 (893)
T KOG0291|consen 341 --SYVLKQ-QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVT-------FTEHTSGVTAVQFTARG-NVLL 408 (893)
T ss_pred --ceeeec-cccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEE-------eccCCCceEEEEEEecC-CEEE
Confidence 222222 7999999999999999999999 99999999998 6777755 78899999999999999 9999
Q ss_pred EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCce
Q 012721 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV 362 (457)
Q Consensus 285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~ 362 (457)
+++.||+|+.||+...... +++.. +. .....+++..|.|.++.+|+ | -.|.+|++.+ ++++
T Consensus 409 ssSLDGtVRAwDlkRYrNf----RTft~-P~-----------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-Gqll 471 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNF----RTFTS-PE-----------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLL 471 (893)
T ss_pred EeecCCeEEeeeeccccee----eeecC-CC-----------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-Ceee
Confidence 9999999999999876543 55544 10 13467899999999999886 4 8899999997 9999
Q ss_pred eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcce
Q 012721 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 442 (457)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 442 (457)
..+.+|++++ .+++|+|++..|++++.|.+|++||+-......-+ -.+...+..++|+|+|.-.
T Consensus 472 DiLsGHEgPV---------------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt-l~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 472 DILSGHEGPV---------------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET-LEIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred ehhcCCCCcc---------------eeeEEccccCeEEeccccceEEEEEeeccCceeee-EeeccceeEEEEcCCCCeE
Confidence 9999999987 58999999999999999999999999776333333 4468899999999999877
Q ss_pred ec
Q 012721 443 RS 444 (457)
Q Consensus 443 ~~ 444 (457)
+.
T Consensus 536 aV 537 (893)
T KOG0291|consen 536 AV 537 (893)
T ss_pred EE
Confidence 66
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=272.60 Aligned_cols=278 Identities=24% Similarity=0.427 Sum_probs=234.0
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|...|.|+.|+++|++|++++.++.+++|+...... .....+.+|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~--------- 203 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT--------- 203 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence 478999999999999999999999999999965541 1344567888
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.+++| ++++.++++++.|++|++||+.. +.....
T Consensus 204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~------------------------------------- 241 (456)
T KOG0266|consen 204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKT------------------------------------- 241 (456)
T ss_pred ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEE-------------------------------------
Confidence 88999999 78999999999999999999933 333322
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
+ .+|...|++++|+|+++++++| .|++|+|||++ .+.+... +.+|..
T Consensus 242 -----------------------l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~-------l~~hs~ 289 (456)
T KOG0266|consen 242 -----------------------L-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRK-------LKGHSD 289 (456)
T ss_pred -----------------------e-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEe-------eeccCC
Confidence 2 6999999999999999999999 99999999999 5677765 789999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEEEe
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD 346 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~ 346 (457)
.|++++|++++ ++|++++.|+.|++||+.++... ....+.. +.. .+++++|+|+++|++++.
T Consensus 290 ~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~-------------~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 290 GISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSG-------------AENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred ceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccC-------------CCCCCceeEEEECCCCcEEEEec
Confidence 99999999999 99999999999999999998631 0122222 112 599999999999999987
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
+ +.+++||+.. ......+.+|..... ++ ++...++.+.++++|+.|+.|++|++.++ .....+++
T Consensus 354 ~d~~~~~w~l~~-~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 354 LDRTLKLWDLRS-GKSVGTYTGHSNLVR---------CI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred CCCeEEEEEccC-CcceeeecccCCcce---------eE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 6 8999999985 788888888887521 11 35566889999999999999999999997 78889999
Q ss_pred C-CCcceeeeeccCCcceeccc
Q 012721 426 G-KNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 426 ~-~~~v~~~~~~p~~~~~~~~~ 446 (457)
| ...+..+.++|......++-
T Consensus 420 h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 420 HSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred CCCCceeccccCCCcCeeeecC
Confidence 9 99999999999998888843
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=246.82 Aligned_cols=258 Identities=18% Similarity=0.310 Sum_probs=220.4
Q ss_pred cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (457)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (457)
..+|++..++.. |.+.|.|+++.|.+.+|++|+.|++|+|||+.+++
T Consensus 138 HapwKl~rVi~g--------HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~------------------------- 184 (460)
T KOG0285|consen 138 HAPWKLYRVISG--------HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ------------------------- 184 (460)
T ss_pred cCcceehhhhhh--------ccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------------------
Confidence 345677776665 99999999999999999999999999999999887
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
+..++.||- ..|..+++ ++--.|+++++.|+.|+.||++..+..+.
T Consensus 185 --LkltltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~------------------ 230 (460)
T KOG0285|consen 185 --LKLTLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRH------------------ 230 (460)
T ss_pred --EEEeecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhhhHHH------------------
Confidence 457899998 88999999 67778999999999999999988754432
Q ss_pred ccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC
Q 012721 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (457)
+ .+|-..|+|++.+|.-..|++| .|..+++||++ .
T Consensus 231 ------------------------------------------Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-t 266 (460)
T KOG0285|consen 231 ------------------------------------------Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-T 266 (460)
T ss_pred ------------------------------------------h-ccccceeEEEeccccceeEEecCCcceEEEeeec-c
Confidence 2 6899999999999999999999 99999999999 4
Q ss_pred cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
...+.+ +.+|..+|.++.+.|.. ..+++||.|++|++||++.++.. .. +..|...
T Consensus 267 r~~V~~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~-------~t----------lt~hkks 321 (460)
T KOG0285|consen 267 RASVHV-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM-------IT----------LTHHKKS 321 (460)
T ss_pred cceEEE-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee-------Ee----------eecccce
Confidence 555544 78999999999999988 78999999999999999998532 11 3557789
Q ss_pred eEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEE
Q 012721 330 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (457)
Q Consensus 330 v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 409 (457)
|.+++.+|....+|+++-..|+-|++.. +..+..+.+|...+ .+++...|+ ++++|+++|.+.
T Consensus 322 vral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~ 384 (460)
T KOG0285|consen 322 VRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIM 384 (460)
T ss_pred eeEEecCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEE
Confidence 9999999999999999888999999964 78888888898776 477777665 788999999999
Q ss_pred EEecCCCCceeeE
Q 012721 410 IFSHGVGSAGGIT 422 (457)
Q Consensus 410 iw~~~~~~~~~~~ 422 (457)
+||.++| ...+.
T Consensus 385 fwdwksg-~nyQ~ 396 (460)
T KOG0285|consen 385 FWDWKSG-HNYQR 396 (460)
T ss_pred EEecCcC-ccccc
Confidence 9999998 44333
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-35 Score=248.66 Aligned_cols=273 Identities=16% Similarity=0.287 Sum_probs=226.9
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|++.|+-+.||++|+|||+++.|.+..||++.... ..+...++.+|.
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~--------- 269 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS--------- 269 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc---------
Confidence 99999999999999999999999999999987554 235778899999
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
.+|..+.| |||..++++|+.|..+++||+.+|.....+.
T Consensus 270 ---~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~------------------------------------ 308 (519)
T KOG0293|consen 270 ---QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYP------------------------------------ 308 (519)
T ss_pred ---CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhcc------------------------------------
Confidence 88999999 8999999999999999999999987654432
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC-CC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TE 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~ 268 (457)
.++...+.+++|.|||..+++| .|+.+..||++ +. ...- +++- .-
T Consensus 309 ------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn-~~~~-------W~gvr~~ 355 (519)
T KOG0293|consen 309 ------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GN-ILGN-------WEGVRDP 355 (519)
T ss_pred ------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cc-hhhc-------ccccccc
Confidence 4566789999999999999999 99999999998 33 2222 2222 24
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ec
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~ 347 (457)
.|.+++..+|| +++++...|..|++|+..+.... .+... ..+|++.+.|.+++++++. .+
T Consensus 356 ~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 356 KVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred eeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEccc
Confidence 58999999999 88888889999999998875322 22332 3689999999999999876 45
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
..+++||++ +.+.+..+.+|...... ..-+|.. +..++++|++|+.|+||+..+| +.+.++.||
T Consensus 417 qei~LWDl~-e~~lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGH 481 (519)
T KOG0293|consen 417 QEIHLWDLE-ENKLVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGH 481 (519)
T ss_pred CeeEEeecc-hhhHHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCC
Confidence 999999998 58889999998865321 2345543 5689999999999999999999 899999999
Q ss_pred CCcceeeeeccCCcceec
Q 012721 427 KNENRKPILQAAPRARRS 444 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~ 444 (457)
...|++|+|+|..|....
T Consensus 482 s~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 482 SKTVNCVSWNPADPEMFA 499 (519)
T ss_pred cceeeEEecCCCCHHHhh
Confidence 999999999999876655
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-34 Score=249.21 Aligned_cols=289 Identities=19% Similarity=0.271 Sum_probs=218.9
Q ss_pred ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc-c
Q 012721 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF-D 105 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~ 105 (457)
.+.|..+|.+.+|+|-.. +||+|+.|-+.++|++...... +...+ .|+ |. + .
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~-----~~~q~------------------~lr-h~--~~~ 227 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI-----GSTQL------------------VLR-HC--IRE 227 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc-----cchhh------------------hhh-hh--hhh
Confidence 345999999999999665 9999999999999998741110 00000 011 10 0 0
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..++...+..|++++| +.+|+.||+|+.||.+++|+.........
T Consensus 228 ~~~s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~tl--------------------------------- 272 (524)
T KOG0273|consen 228 GGKSVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLISTL--------------------------------- 272 (524)
T ss_pred hcccCCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhhh---------------------------------
Confidence 1233344478999999 78999999999999999999876543221
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeee---------
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI--------- 255 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~--------- 255 (457)
..|.++|.++.|+.+|.+|+++ .|+++.+||..+ +...+.
T Consensus 273 -----------------------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 273 -----------------------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQQFEFHSAPAL 322 (524)
T ss_pred -----------------------------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEEeeeeccCCcc
Confidence 5678888888888888888888 888888888752 222111
Q ss_pred ---------------------eec----CCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccc
Q 012721 256 ---------------------VDM----KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (457)
Q Consensus 256 ---------------------~~~----~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~ 310 (457)
+.+ +..++.+|.+.|.++.|+|.+ .+|+++|.|++++||.+......
T Consensus 323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~------- 394 (524)
T KOG0273|consen 323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSV------- 394 (524)
T ss_pred ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcch-------
Confidence 111 113567899999999999999 99999999999999998765322
Q ss_pred cccccccCcccceeccccceEEEEEccCC---------CeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721 311 RDAAESHGSKSFFTEIIASISDIKFANDG---------QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 380 (457)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---------~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (457)
. .+.+|...|..+.|+|.| ..|+++ .|++|++||+.. +.++..+..|..++
T Consensus 395 ~----------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pV-------- 455 (524)
T KOG0273|consen 395 H----------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPV-------- 455 (524)
T ss_pred h----------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCce--------
Confidence 1 146678899999999975 345655 469999999986 99999999999876
Q ss_pred CCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCccee
Q 012721 381 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (457)
Q Consensus 381 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 443 (457)
++++|+|+|+|+|+|+.||.|.+|+.+++ +..+... ..+.|..+.|+.++....
T Consensus 456 -------ysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~-~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 456 -------YSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQ-GTGGIFELCWNAAGDKLG 509 (524)
T ss_pred -------EEEEecCCCcEEEecCCCCeeEeccccch-heeEeec-CCCeEEEEEEcCCCCEEE
Confidence 79999999999999999999999999999 5555544 466699999999984443
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=261.63 Aligned_cols=354 Identities=16% Similarity=0.207 Sum_probs=256.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|+++|.-++|+|.+.+||+|+.||.+++||+..+. +...|+||.
T Consensus 102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~---------------------------~th~fkG~g------- 147 (775)
T KOG0319|consen 102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY---------------------------CTHSFKGHG------- 147 (775)
T ss_pred hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---------------------------EEEEecCCC-------
Confidence 3499999999999999999999999999999998665 678899999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCC-------
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPP------- 180 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 180 (457)
+.|.++.|.|..+-..|++|..|+++++||+.+... ...... ....|++++|......++..+...
T Consensus 148 -----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~-H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 148 -----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMIL-HKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred -----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHh-hhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 899999998777777899999999999999986543 111111 112344455444432222222211
Q ss_pred ----------------CceeccC-----Ccc----ccccc----------------------------------------
Q 012721 181 ----------------SFAHGYH-----LEW----TENMA---------------------------------------- 195 (457)
Q Consensus 181 ----------------~~~~~~~-----~~~----~~~~~---------------------------------------- 195 (457)
...+... +.+ ...+.
T Consensus 222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 222 VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence 0000000 000 00112
Q ss_pred ---eEEEeccCcc----------------------------------------ccccceeeccCCCCCeeEEEeCCCCCE
Q 012721 196 ---TKIANVGNSV----------------------------------------HARCQKVYPHAHDFNINSISNNSDCET 232 (457)
Q Consensus 196 ---i~~~~~~~~~----------------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~ 232 (457)
+.++|.++-. ...| + +..+|+..|.+++...+|.+
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~-ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-Q-IIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce-E-EEeCchhheeeeeecccCcE
Confidence 2222222100 0011 2 33789999999996667889
Q ss_pred EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee--------
Q 012721 233 FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-------- 303 (457)
Q Consensus 233 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~-------- 303 (457)
|++| .|+++++|.++ .+...... .....+|.+.|.+++++..+..+|+++|.|+++++|++...+..
T Consensus 380 lat~sKD~svilWr~~-~~~~~~~~---~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLN-NNCSKSLC---VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred EEEecCCceEEEEEec-CCcchhhh---hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 9999 99999999885 22211110 02357899999999998888789999999999999998873211
Q ss_pred ----------------------------ccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEe
Q 012721 304 ----------------------------DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD 354 (457)
Q Consensus 304 ----------------------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd 354 (457)
++..++|.. +.-.....+.+|...|+++.|+|..+.+++++ |++|+||.
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l--e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL--EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEecccccceeeecc--cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 111112221 01122256889999999999999999999986 59999999
Q ss_pred ccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeee
Q 012721 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI 434 (457)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 434 (457)
+.+ ..+++++.+|...+ ..+.|-.++..|++++.||.|++|+++++ .+..++.+|...|++++
T Consensus 534 is~-fSClkT~eGH~~aV---------------lra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 534 IST-FSCLKTFEGHTSAV---------------LRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHNDRVWALS 596 (775)
T ss_pred ecc-ceeeeeecCcccee---------------EeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccceeEEEe
Confidence 986 89999999999876 78999999999999999999999999999 89999999999999999
Q ss_pred eccCCcceecccc
Q 012721 435 LQAAPRARRSSLS 447 (457)
Q Consensus 435 ~~p~~~~~~~~~~ 447 (457)
.+|...+..+|-+
T Consensus 597 ~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 597 VSPLLDMFVTGGG 609 (775)
T ss_pred ecCccceeEecCC
Confidence 9999988886433
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=225.83 Aligned_cols=259 Identities=16% Similarity=0.260 Sum_probs=213.0
Q ss_pred CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEe
Q 012721 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (457)
Q Consensus 44 ~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (457)
.-+||+++.|-+|++|...++. +..+++-.+ ..|+.+..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~---------------------------C~rTiqh~d------------sqVNrLei-- 48 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGI---------------------------CSRTIQHPD------------SQVNRLEI-- 48 (311)
T ss_pred ceEEEeccCcceeeeeehhcCe---------------------------EEEEEecCc------------cceeeEEE--
Confidence 4689999999999999999887 556666555 77999999
Q ss_pred cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (457)
Q Consensus 124 s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 203 (457)
.|++..|++++. ..|++||++++....+
T Consensus 49 Tpdk~~LAaa~~-qhvRlyD~~S~np~Pv--------------------------------------------------- 76 (311)
T KOG0315|consen 49 TPDKKDLAAAGN-QHVRLYDLNSNNPNPV--------------------------------------------------- 76 (311)
T ss_pred cCCcchhhhccC-CeeEEEEccCCCCCce---------------------------------------------------
Confidence 788888887776 5699999998754322
Q ss_pred ccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccE
Q 012721 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (457)
Q Consensus 204 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 282 (457)
..+ .+|...|.++.|..+|+.+++| +||+++|||++ ...+.+. -.|..+|+++..+|+. ..
T Consensus 77 -------~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR-~~~~qR~--------~~~~spVn~vvlhpnQ-te 138 (311)
T KOG0315|consen 77 -------ATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR-SLSCQRN--------YQHNSPVNTVVLHPNQ-TE 138 (311)
T ss_pred -------eEE-eccCCceEEEEEeecCeEEEecCCCceEEEEecc-Ccccchh--------ccCCCCcceEEecCCc-ce
Confidence 223 6899999999999999999999 99999999999 4444433 3467999999999998 89
Q ss_pred EEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccC----
Q 012721 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM---- 357 (457)
Q Consensus 283 l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~---- 357 (457)
|++|..+|.|++||+....... ..+.. -...|.++...|||.+|+++.+ |..++|++-.
T Consensus 139 Lis~dqsg~irvWDl~~~~c~~---~liPe-------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCTH---ELIPE-------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA 202 (311)
T ss_pred EEeecCCCcEEEEEccCCcccc---ccCCC-------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence 9999999999999999863221 11111 1357999999999999999987 9999999843
Q ss_pred -CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721 358 -DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 436 (457)
.-+++..++.|..-+ +.+.+|||+++||+++.|.+++||+..+--+....+++|...+...+||
T Consensus 203 s~l~P~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred ccceEhhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 124566788888765 6899999999999999999999999988766778899999999999999
Q ss_pred cCCcceec
Q 012721 437 AAPRARRS 444 (457)
Q Consensus 437 p~~~~~~~ 444 (457)
.|+.-...
T Consensus 268 ~dg~YlvT 275 (311)
T KOG0315|consen 268 ADGEYLVT 275 (311)
T ss_pred cCccEEEe
Confidence 99876655
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.7e-35 Score=252.50 Aligned_cols=276 Identities=16% Similarity=0.202 Sum_probs=228.2
Q ss_pred ccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.-+|+..|+++.|.| .+.+|++|+.|+.|+||++.... .+++++.||.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------------------------~~lrtf~gH~----- 258 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------------------------RCLRTFKGHR----- 258 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------ceehhhhcch-----
Confidence 345999999999999 89999999999999999998743 3788999999
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
.+|.+++| +++|..|++++.|+.|++||+++|++.....
T Consensus 259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-------------------------------- 297 (503)
T KOG0282|consen 259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-------------------------------- 297 (503)
T ss_pred -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEe--------------------------------
Confidence 89999999 7999999999999999999999998765432
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
-...++|+.|+|++ +.+++| .|+.|+.||++ .++.++. +.
T Consensus 298 ------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqe-------Yd 339 (503)
T KOG0282|consen 298 ------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQE-------YD 339 (503)
T ss_pred ------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHH-------HH
Confidence 23367899999988 778888 99999999999 5665543 67
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
.|-+.|..+.|-++| ..+++.+.|++++||+.+..-.... +... +.-...++..+|++.++++
T Consensus 340 ~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~---i~~~-------------~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 340 RHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKN---IADP-------------EMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred hhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchh---hcch-------------hhccCcceecCCCCCeehh
Confidence 788999999999999 9999999999999999988643211 1111 1134678899999999998
Q ss_pred Ee-cCcEEEEeccCC--CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceee
Q 012721 345 RD-YMNLKLWDIRMD--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (457)
Q Consensus 345 ~~-~~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~ 421 (457)
-+ ++.|.++.+... ......+.+|...... ..+.|||||.+|++|+.||.+.+||.++- +...
T Consensus 403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~ 468 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVS 468 (503)
T ss_pred hccCceEEEEecccccccCHhhhhcceeccCce-------------eeEEEcCCCCeEEeecCCccEEEeechhh-hhhh
Confidence 76 499999987532 2234566777644211 47899999999999999999999999998 7889
Q ss_pred EEecCCCcceeeeeccCCcceec
Q 012721 422 TVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 422 ~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
++++|..++..+.|||.-++...
T Consensus 469 ~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred ccccCCcceEEEEecCCCcceeE
Confidence 99999999999999999877654
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=222.68 Aligned_cols=277 Identities=16% Similarity=0.297 Sum_probs=215.8
Q ss_pred cccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-ccCCccccc
Q 012721 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY 106 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~ 106 (457)
..|++.|..++|+|- |.+||+++.|+.|+||+...+. .+.+...+ .+|+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk----- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK----- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch-----
Confidence 358999999999997 8899999999999999987533 23444444 3566
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++| +|.|++|+++|.|.++.||.-..++...+
T Consensus 62 -------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv---------------------------------- 98 (312)
T KOG0645|consen 62 -------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECV---------------------------------- 98 (312)
T ss_pred -------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEE----------------------------------
Confidence 88999999 78999999999999999998776654432
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
.++ .+|...|.|++|+++|++||+| .|++|.||.+. .+..+... ..+++
T Consensus 99 ------------------------~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~----aVL~~ 148 (312)
T KOG0645|consen 99 ------------------------ATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECI----AVLQE 148 (312)
T ss_pred ------------------------eee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEE----eeecc
Confidence 222 7999999999999999999999 99999999998 33332222 22789
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
|...|..+.|+|.. .+|++++.|++|++|+-..+. .-.....+.+|...|++++|++.|..|+++
T Consensus 149 HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd--------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD--------------DWECVQTLDGHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred ccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC--------------CeeEEEEecCccceEEEEEecCCCceEEEe
Confidence 99999999999998 899999999999999865321 111123356778899999999999999999
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC-C-----c
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-S-----A 418 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~-~-----~ 418 (457)
++ ++++||-.... + -..|...+ +.+.|. ...|++++.|+.|++|.-... . .
T Consensus 214 sdD~tv~Iw~~~~~---~--~~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l 271 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTD---L--SGMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL 271 (312)
T ss_pred cCCcceEeeeeccC---c--chhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH
Confidence 86 99999986521 1 11233332 578887 557999999999999987653 0 1
Q ss_pred eeeEEecCCCcceeeeeccCCcceec
Q 012721 419 GGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
....-..|...|++|.|.|..+.++.
T Consensus 272 ~~~~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 272 LAKKEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred HHhhhcccccccceEEEcCCCCCcee
Confidence 12244688999999999996555554
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-32 Score=238.98 Aligned_cols=349 Identities=14% Similarity=0.215 Sum_probs=241.7
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
+|...++-..|||.|-|+|+|...|+|+|||....+.. +..+++.-.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi-------------------------LKnef~v~a-------- 103 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI-------------------------LKNEFQVLA-------- 103 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCccee-------------------------eeeeeeecc--------
Confidence 39999999999999999999999999999998765432 344555555
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeC--C--CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTN--D--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~--d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
++|..++| +.++..|++.++ + |.+.+||.-+ ..-.+. .....+.++.|-+....-+....
T Consensus 104 ----G~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG~--SvGei~-GhSr~ins~~~KpsRPfRi~T~s------- 167 (603)
T KOG0318|consen 104 ----GPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSGN--SVGEIT-GHSRRINSVDFKPSRPFRIATGS------- 167 (603)
T ss_pred ----ccccccee--CCCCcEEEEEecCccceeEEEEecCCC--ccceee-ccceeEeeeeccCCCceEEEecc-------
Confidence 89999999 789999888663 2 4566666432 221111 11223445555443332222111
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
.+..+.+++- +..+....+ ..|..-|+|+.|+|||.++++. .||.+.+||=. .++.+..+. .-.
T Consensus 168 ------dDn~v~ffeG---PPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~----~~~ 232 (603)
T KOG0318|consen 168 ------DDNTVAFFEG---PPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELE----DSD 232 (603)
T ss_pred ------CCCeEEEeeC---CCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEec----CCC
Confidence 1223334332 122222233 7899999999999999999998 99999999988 555555432 135
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc----------------------------ccccccccccc
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------------SARILRDAAES 316 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~----------------------------~~~~~~~~~~~ 316 (457)
+|.+.|.+++|+||+ ..+++++.|.+++|||+.+.++... .+..+. ...
T Consensus 233 aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln--~~d 309 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLN--PSD 309 (603)
T ss_pred CccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEec--ccC
Confidence 899999999999999 9999999999999999998754311 001111 122
Q ss_pred cCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCC----------ceeEeeecc-ccc---------c--
Q 012721 317 HGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST----------PVATFKIHE-HLR---------P-- 373 (457)
Q Consensus 317 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~----------~~~~~~~~~-~~~---------~-- 373 (457)
+.....+.+|...|+++..+|++++|++|+. |.|.-|+...... .+..+..++ +.+ .
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 2344678899999999999999999999986 9999999864211 111111111 000 0
Q ss_pred --------------------ccc-----------------------cccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721 374 --------------------KLC-----------------------DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 374 --------------------~~~-----------------------~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i 410 (457)
.++ .....+..+...+++++|++..++.|+.|+.|+|
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 000 0011222233467899999999999999999999
Q ss_pred EecCCCC-ceeeEEecCCCcceeeeeccCCcceecc
Q 012721 411 FSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 411 w~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
|.+.-++ ....++..|.++++.++++||+...+.|
T Consensus 470 ysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 470 YSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred EEecCCcccceeeeecccCCceEEEECCCCcEEEEe
Confidence 9998764 4455788999999999999999888774
No 28
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=260.67 Aligned_cols=277 Identities=19% Similarity=0.311 Sum_probs=205.7
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCccc---chh-----------------hhhhc------c--
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI---SRS-----------------ELEKQ------M-- 81 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~---~~~-----------------~~~~~------~-- 81 (457)
.|.++|+++.||+||+|||+|+.||.|+||.+...+....... |+. .+... +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876221100000 000 00000 0
Q ss_pred -c----ccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec
Q 012721 82 -D----FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (457)
Q Consensus 82 -~----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~ 156 (457)
. +.+.+.=..+++..|.||. +.|.++.| +.+ ++|++++.|++|+||++...+++..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--SKn-~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--SKN-NFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccc--ccC-CeeEeccccccEEeecCCCcceeeE----
Confidence 0 0001111345667788888 88999999 454 5999999999999999987765544
Q ss_pred CCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEE
Q 012721 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS 235 (457)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~ 235 (457)
..|...|+|++|+| |.++|++
T Consensus 406 ----------------------------------------------------------F~HndfVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 406 ----------------------------------------------------------FSHNDFVTCVAFNPVDDRYFIS 427 (712)
T ss_pred ----------------------------------------------------------EecCCeeEEEEecccCCCcEee
Confidence 37999999999999 8899999
Q ss_pred e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc
Q 012721 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (457)
Q Consensus 236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 314 (457)
| -|+.|+||++. ..+... +....+.|++++|.|+| +..++|+.+|.+++|++...++.. .+..+.
T Consensus 428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~ 493 (712)
T KOG0283|consen 428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL 493 (712)
T ss_pred cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence 9 99999999998 444433 23344889999999999 999999999999999998876542 111100
Q ss_pred cccCcccceeccccceEEEEEccCC--CeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE
Q 012721 315 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (457)
Q Consensus 315 ~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (457)
.. ... ..|. .|+.+.|.|.. +.|++..|..|+|+|.+. ..++..+++..+.... ....|
T Consensus 494 ~~---~Kk-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf 554 (712)
T KOG0283|consen 494 HN---KKK-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF 554 (712)
T ss_pred cc---Ccc-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence 00 001 1122 79999999754 488888889999999975 7888888887665432 47899
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCC
Q 012721 393 SGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 393 s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+.||++|+++++|..|+||++...
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCCC
Confidence 999999999999999999998543
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-33 Score=258.25 Aligned_cols=202 Identities=19% Similarity=0.380 Sum_probs=181.0
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|.++|+.++|+|+.++|+++++|+++++|.+++.. ++..++||.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---------------------------~~V~y~GH~------ 493 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---------------------------CLVIYKGHL------ 493 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccce---------------------------eEEEecCCC------
Confidence 56799999999999999999999999999999998665 567889999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
.+|..+.| +|-|-+|||++.|++.++|.......
T Consensus 494 ------~PVwdV~F--~P~GyYFatas~D~tArLWs~d~~~P-------------------------------------- 527 (707)
T KOG0263|consen 494 ------APVWDVQF--APRGYYFATASHDQTARLWSTDHNKP-------------------------------------- 527 (707)
T ss_pred ------cceeeEEe--cCCceEEEecCCCceeeeeecccCCc--------------------------------------
Confidence 89999999 68899999999999999999876543
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
++++ .+|...|.|+.|+|+..++++| .|.+|++||+. .+..+++ +.||
T Consensus 528 ----------------------lRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRi-------F~GH 576 (707)
T KOG0263|consen 528 ----------------------LRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRI-------FTGH 576 (707)
T ss_pred ----------------------hhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEE-------ecCC
Confidence 3333 7999999999999999999999 99999999999 7888887 6899
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.++|.+++|+|+| .+|++|+.||.|.+||+.+++.. .. +.+|.+.|.++.|+.+|..||+|+
T Consensus 577 ~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v----~~-------------l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 577 KGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLV----KQ-------------LKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred CCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcch----hh-------------hhcccCceeEEEEecCCCEEEecC
Confidence 9999999999999 99999999999999999998643 22 355788999999999999999986
Q ss_pred -cCcEEEEeccC
Q 012721 347 -YMNLKLWDIRM 357 (457)
Q Consensus 347 -~~~i~~wd~~~ 357 (457)
|++|++||+..
T Consensus 639 ~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 639 ADNSVRLWDLTK 650 (707)
T ss_pred CCCeEEEEEchh
Confidence 59999999964
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-33 Score=249.25 Aligned_cols=278 Identities=16% Similarity=0.203 Sum_probs=239.3
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.+++.|.++.|+|...+++++-.+|.|.||+.++... +..++-.+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~-------- 55 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE-------- 55 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc--------
Confidence 3889999999999999999999999999999987763 34555555
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
.+|.+..|. ...+.+++|+.|..|++|+..+++.+..+
T Consensus 56 ----~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~F------------------------------------ 93 (794)
T KOG0276|consen 56 ----VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKTF------------------------------------ 93 (794)
T ss_pred ----cchhhheee--eccceEEEecCCceEEEEecccceeeEEe------------------------------------
Confidence 688999996 45669999999999999999998665442
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..|.+.|.|++.+|...+++++ +|-.|++||.+..-.+.++ +++|..
T Consensus 94 -------------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~H 141 (794)
T KOG0276|consen 94 -------------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHEH 141 (794)
T ss_pred -------------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcce
Confidence 6899999999999999999999 9999999999955455554 799999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC--CeEEEEe
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRD 346 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~ 346 (457)
.|.+++|+|..++.+++++.|++|++|.+.+.. ...++.+|...|+++.|-+-| .||++|+
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----------------~nfTl~gHekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------------CceeeeccccCcceEEeccCCCcceEEecC
Confidence 999999999888999999999999999987642 123457789999999998754 6999987
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
| ..|++||..+ ..++.++.+|...+ ..+.|+|.-.+|++|++||+++||+-.|- +...++..
T Consensus 205 DD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~ 267 (794)
T KOG0276|consen 205 DDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY 267 (794)
T ss_pred CCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc
Confidence 6 9999999986 89999999999876 47899999999999999999999999887 66777888
Q ss_pred CCCcceeeeeccCCcceeccccccc
Q 012721 426 GKNENRKPILQAAPRARRSSLSNLT 450 (457)
Q Consensus 426 ~~~~v~~~~~~p~~~~~~~~~~~~~ 450 (457)
....+++++.++.....+.|+.+..
T Consensus 268 gleRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 268 GLERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred CCceEEEEeecCCCCeEEEeccCCc
Confidence 8899999999888888777766543
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-32 Score=222.44 Aligned_cols=244 Identities=16% Similarity=0.194 Sum_probs=200.7
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
...++++|. +.|+.++..+ .+.+.+++++.|.++.+|++......
T Consensus 7 l~~tl~gh~------------d~Vt~la~~~-~~~~~l~sasrDk~ii~W~L~~dd~~---------------------- 51 (315)
T KOG0279|consen 7 LRGTLEGHT------------DWVTALAIKI-KNSDILVSASRDKTIIVWKLTSDDIK---------------------- 51 (315)
T ss_pred eeeeecCCC------------ceEEEEEeec-CCCceEEEcccceEEEEEEeccCccc----------------------
Confidence 456789999 7899999864 35678999999999999998765221
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (457)
.+.+++.+ .+|...|..+..++||++.+++ .|+++++||+. .++
T Consensus 52 ---------------------------------~G~~~r~~-~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-~g~ 96 (315)
T KOG0279|consen 52 ---------------------------------YGVPVRRL-TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-TGE 96 (315)
T ss_pred ---------------------------------cCceeeee-eccceEecceEEccCCceEEeccccceEEEEEec-CCc
Confidence 12333334 7899999999999999999999 99999999999 555
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
..+. +.+|...|.+++|+|+. ..|++|+.|.+|++||+...... .+.+ ..+...|+
T Consensus 97 ~t~~-------f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~----t~~~------------~~~~~WVs 152 (315)
T KOG0279|consen 97 STRR-------FVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY----TIHE------------DSHREWVS 152 (315)
T ss_pred EEEE-------EEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE----EEec------------CCCcCcEE
Confidence 5554 78999999999999998 99999999999999999876322 1111 11257899
Q ss_pred EEEEccC--CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721 332 DIKFAND--GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (457)
Q Consensus 332 ~~~~s~~--g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 408 (457)
++.|+|+ ..+|++++ |++|++||++. .+....+.+|.+.+ +.+++||||..+++|+.||.+
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v---------------~t~~vSpDGslcasGgkdg~~ 216 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYV---------------NTVTVSPDGSLCASGGKDGEA 216 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccE---------------EEEEECCCCCEEecCCCCceE
Confidence 9999998 67888877 59999999985 78888888998876 689999999999999999999
Q ss_pred EEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 409 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
.+||++.+ +... ...|..+|++++|+|+..-...+.+.
T Consensus 217 ~LwdL~~~-k~ly-sl~a~~~v~sl~fspnrywL~~at~~ 254 (315)
T KOG0279|consen 217 MLWDLNEG-KNLY-SLEAFDIVNSLCFSPNRYWLCAATAT 254 (315)
T ss_pred EEEEccCC-ceeE-eccCCCeEeeEEecCCceeEeeccCC
Confidence 99999998 4444 45689999999999998877665443
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=243.26 Aligned_cols=342 Identities=15% Similarity=0.199 Sum_probs=246.6
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..-..+|.|++|||||+++|.|.. +.+.||........ .-+.+...+++.+|.
T Consensus 93 f~fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~-------------------~~~pFvl~r~~~g~f------- 145 (893)
T KOG0291|consen 93 FNFKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN-------------------EFNPFVLHRTYLGHF------- 145 (893)
T ss_pred EeecCccceEEECCCCcEEEEEec-ceeEEEecCcchhc-------------------ccCcceEeeeecCCc-------
Confidence 344789999999999999999875 47999997654431 113455667788888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc-cccccCCCCCceeccC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-NFMNEHNPPSFAHGYH 187 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 187 (457)
..|.++.| +.|..+|++++.|-++++|.++..+......+..+...-.-.|...+. .++..
T Consensus 146 -----ddi~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tv----------- 207 (893)
T KOG0291|consen 146 -----DDITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTV----------- 207 (893)
T ss_pred -----cceeEEEe--ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEE-----------
Confidence 78999999 789999999999999999999876654444443333222112221111 11111
Q ss_pred CccccccceEEEeccC------------------------cc------ccccceeeccCCCCCeeEEEeCCCCCEEEEe-
Q 012721 188 LEWTENMATKIANVGN------------------------SV------HARCQKVYPHAHDFNINSISNNSDCETFVSA- 236 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~------------------------~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~- 236 (457)
..++.+.+|..+. .. ..+..+.++......|++.+|++..+.|++|
T Consensus 208 ---skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF 284 (893)
T KOG0291|consen 208 ---SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF 284 (893)
T ss_pred ---ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence 1233444554431 00 0011122333344677888888877777777
Q ss_pred CCCeEEEEEcCCCcceeeeeec--------------------------------CC----CcccCCCCceEEEEEecCCc
Q 012721 237 DDLRINLWNLEISDQCFNIVDM--------------------------------KP----SNMDDLTEVITSAEFHPIYC 280 (457)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~----~~~~~~~~~i~~v~~~p~~~ 280 (457)
..|...+|++.. ..++..+.+ .. .+.++|...+++++++|||
T Consensus 285 ssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg- 362 (893)
T KOG0291|consen 285 SSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG- 362 (893)
T ss_pred cCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-
Confidence 777777776652 111111000 00 1257899999999999999
Q ss_pred cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCC
Q 012721 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 359 (457)
Q Consensus 281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~ 359 (457)
++||+|+.||.|+|||.+.+-+. .+ |..|++.|+.++|+..|+.|++++ ||+|+.||+.. .
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~----vT-------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-Y 424 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCF----VT-------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-Y 424 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEE----EE-------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-c
Confidence 99999999999999999987543 22 456889999999999999999987 69999999974 7
Q ss_pred CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC-cEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
+..+++..+....- .+++..|.|..++.|+.|. .|++|++++| +.+-.+.||.+||.+++|+|.
T Consensus 425 rNfRTft~P~p~Qf--------------scvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQF--------------SCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ceeeeecCCCceee--------------eEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccc
Confidence 88888877654321 4788889999999999886 5999999999 888999999999999999999
Q ss_pred Ccceecccccccccccc
Q 012721 439 PRARRSSLSNLTRGLYR 455 (457)
Q Consensus 439 ~~~~~~~~~~~~~~~~~ 455 (457)
+...++ ++-++..|.
T Consensus 490 ~~~LaS--~SWDkTVRi 504 (893)
T KOG0291|consen 490 GSLLAS--GSWDKTVRI 504 (893)
T ss_pred cCeEEe--ccccceEEE
Confidence 998888 777776663
No 33
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-31 Score=219.60 Aligned_cols=280 Identities=19% Similarity=0.259 Sum_probs=219.1
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
-.+.|.++.|+++|.+|++++.|.+++|||..+++. +.++..+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------------~~ti~skk--------- 56 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------------VKTINSKK--------- 56 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------------eeEeeccc---------
Confidence 477999999999999999999999999999988774 34455544
Q ss_pred cccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 111 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
-.|..++|. +++ +.++.++ .|.+|+..++.+.+.++.
T Consensus 57 ---yG~~~~~Ft-h~~-~~~i~sStk~d~tIryLsl~dNkylRY------------------------------------ 95 (311)
T KOG1446|consen 57 ---YGVDLACFT-HHS-NTVIHSSTKEDDTIRYLSLHDNKYLRY------------------------------------ 95 (311)
T ss_pred ---ccccEEEEe-cCC-ceEEEccCCCCCceEEEEeecCceEEE------------------------------------
Confidence 568888885 333 4555555 489999999988766544
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
+ .||...|++++.+|-+..++++ .|++|++||++ ...+...+ +.
T Consensus 96 ------------------------F-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~ 140 (311)
T KOG1446|consen 96 ------------------------F-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NL 140 (311)
T ss_pred ------------------------c-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ec
Confidence 2 7999999999999998999999 99999999999 55555443 22
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..-..++|.|+| -++|++.....|++||+|.-... +..++.. . .+-....+.|.|||||++|+.++.
T Consensus 141 ~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 141 SGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred CCCcceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeC
Confidence 233467899999 99999988889999999974211 1122222 0 022467899999999999998876
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec-
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA- 425 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~- 425 (457)
+.+++.|.-. +.....+..+....... ..++|+||++++++|+.||+|++|+++++ .....+.+
T Consensus 208 ~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~~~ 273 (311)
T KOG1446|consen 208 ASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLRGP 273 (311)
T ss_pred CCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEecCC
Confidence 9999999864 88888888776543111 47899999999999999999999999999 55666666
Q ss_pred CCCcceeeeeccCCcceecccccc
Q 012721 426 GKNENRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 426 ~~~~v~~~~~~p~~~~~~~~~~~~ 449 (457)
+..++.++.|+|...+.+++=+.+
T Consensus 274 ~~~~~~~~~fnP~~~mf~sa~s~l 297 (311)
T KOG1446|consen 274 NGGPVSCVRFNPRYAMFVSASSNL 297 (311)
T ss_pred CCCCccccccCCceeeeeecCceE
Confidence 799999999999999888854443
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-33 Score=234.13 Aligned_cols=244 Identities=19% Similarity=0.301 Sum_probs=212.0
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|+++|..++|+..|++||+++.|-.+++||.++. ++++..+.+|+
T Consensus 146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------------------------~~c~ks~~gh~------ 193 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------------------------FRCIKSLIGHE------ 193 (406)
T ss_pred hhccccceeEEEEecCccEEEecCCccchhheeHHHH--------------------------HHHHHHhcCcc------
Confidence 3459999999999999999999999988999998753 34667788888
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.++.|.| .|.++++++.|.+|+.|++.++.++..+
T Consensus 194 ------h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t~---------------------------------- 231 (406)
T KOG0295|consen 194 ------HGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKTF---------------------------------- 231 (406)
T ss_pred ------cceeeEEEEe--cCCeeeecccccceeEEecccceeEEec----------------------------------
Confidence 7899999974 6789999999999999999998665442
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+|...|..++.+.||.++++| .|.+|++|-+. .+++... +.+|
T Consensus 232 ---------------------------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~-t~~~k~~-------lR~h 276 (406)
T KOG0295|consen 232 ---------------------------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA-TKQCKAE-------LREH 276 (406)
T ss_pred ---------------------------cCchHhEEEEEecCCeeEEEecCCCceEEEEEec-cchhhhh-------hhcc
Confidence 6888899999999999999999 99999999998 5655543 6789
Q ss_pred CCceEEEEEecCC--------------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 267 TEVITSAEFHPIY--------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 267 ~~~i~~v~~~p~~--------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
..+|-+++|.|.. ..++.+++.|++|++||+.++.+. +. +.+|..+|..
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~t-----------L~ghdnwVr~ 339 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FT-----------LVGHDNWVRG 339 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EE-----------Eecccceeee
Confidence 9999999997641 258999999999999999998643 33 3678899999
Q ss_pred EEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721 333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 333 ~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw 411 (457)
++|+|.|+||+++.| +++++||++. .+++..+..|+..+ ++++|+.+..++++|+-|.++++|
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfv---------------t~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFV---------------TSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCccee---------------EEEecCCCCceEEeccccceeeee
Confidence 999999999998765 9999999986 89999999998876 689999999999999999999999
Q ss_pred ec
Q 012721 412 SH 413 (457)
Q Consensus 412 ~~ 413 (457)
..
T Consensus 404 Ec 405 (406)
T KOG0295|consen 404 EC 405 (406)
T ss_pred ec
Confidence 74
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-31 Score=238.39 Aligned_cols=270 Identities=23% Similarity=0.399 Sum_probs=223.1
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.++|++++|+|++++|++++.+|.|++|++.+++ ....+.+|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~-------- 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHT-------- 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCC--------
Confidence 489999999999999999999999999999998665 234566777
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..+..+.| .++++++++++.|+.|++|++.+++.....
T Consensus 52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~------------------------------------ 89 (289)
T cd00200 52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVRTL------------------------------------ 89 (289)
T ss_pred ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEEE------------------------------------
Confidence 77889999 577889999999999999999876433221
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..|...+.++.|++++++++++ .|+.|++||++ ..+.... +..|..
T Consensus 90 -------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~ 136 (289)
T cd00200 90 -------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTT-------LRGHTD 136 (289)
T ss_pred -------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEE-------eccCCC
Confidence 4577789999999998899988 69999999998 4444443 456888
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~ 347 (457)
.+.+++|+|++ .++++++.|+.|++||++.++.. .. +..|...+.++.|+|+++.+++++ +
T Consensus 137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----AT-------------LTGHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred cEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccc----ee-------------EecCccccceEEECCCcCEEEEecCC
Confidence 99999999997 89998888999999999875432 22 234556899999999998888776 5
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 427 (457)
+.|++||++. ++.+..+..|...+ .++.|+|++.++++++.||.|++|++.++ .....+..|.
T Consensus 199 ~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~ 261 (289)
T cd00200 199 GTIKLWDLST-GKCLGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHT 261 (289)
T ss_pred CcEEEEECCC-CceecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccccC
Confidence 9999999975 67777776666543 68999999999999888999999999987 6677788999
Q ss_pred CcceeeeeccCCcceec
Q 012721 428 NENRKPILQAAPRARRS 444 (457)
Q Consensus 428 ~~v~~~~~~p~~~~~~~ 444 (457)
..+.++.|+|++....+
T Consensus 262 ~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 262 NSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CcEEEEEECCCCCEEEE
Confidence 99999999999776665
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=256.05 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=243.7
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
.+..|..++|+|...+++++-..|.|++||..=+. ++..|.+|+
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t---------------------------li~rFdeHd--------- 51 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT---------------------------LIDRFDEHD--------- 51 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------------HHhhhhccC---------
Confidence 46789999999999999999999999999987443 556788898
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
++|..+.| +|...+|++|+.|..|++|+..+.++...
T Consensus 52 ---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~rrclft-------------------------------------- 88 (1202)
T KOG0292|consen 52 ---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKTRRCLFT-------------------------------------- 88 (1202)
T ss_pred ---Cccceeee--cCCCCeEEecCCccEEEEEecccceehhh--------------------------------------
Confidence 99999999 57888999999999999999988765432
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
+ .+|.+.|..+.|++.-.+|+++ +|.+|+||++. .+.++.+ +.+|...
T Consensus 89 ----------------------L-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHY 137 (1202)
T KOG0292|consen 89 ----------------------L-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHY 137 (1202)
T ss_pred ----------------------h-ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceE
Confidence 2 7999999999999999999999 99999999999 7778876 7999999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc----ccccc--------ccccCcccceeccccceEEEEEcc
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR----ILRDA--------AESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~----~~~~~--------~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
|.|..|+|.. .+++++|.|.+||+||+..-+....... .+.++ ..+...+..+.||...|+.++|+|
T Consensus 138 VMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 138 VMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 9999999988 8999999999999999865321100000 01110 012234567899999999999999
Q ss_pred CCCeEEEEec-CcEEEEeccCCCC--ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 338 DGQHLLSRDY-MNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 338 ~g~~l~s~~~-~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
.-.+|++|+| ..|++|.+.. .+ .+.+.++|.+.+ .++-|+|...+|++.++|++|+|||+.
T Consensus 217 TlpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred CcceEEecCCcceeeEEEecc-ccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecc
Confidence 9999999976 9999999863 33 356778898876 689999999999999999999999998
Q ss_pred CCCceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 449 (457)
.. +.++++.-..+..+.++.||.....+.|..+.
T Consensus 281 kR-t~v~tfrrendRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 281 KR-TSVQTFRRENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred cc-cceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence 87 78899998999999999999988887766553
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.2e-34 Score=241.32 Aligned_cols=241 Identities=19% Similarity=0.372 Sum_probs=200.6
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.++|+++.|+++|.++++|+.+|.|++|+..-.. +..+++|..
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----------------------------Vk~~~ahh~------- 180 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----------------------------VKIIQAHHA------- 180 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccchhh----------------------------hHHhhHhhh-------
Confidence 499999999999999999999999999999975433 334555542
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.+++| +|++..|++++.||+|+|||....+...++
T Consensus 181 ----eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~kee~vL------------------------------------ 218 (464)
T KOG0284|consen 181 ----EAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMPKEERVL------------------------------------ 218 (464)
T ss_pred ----hhhheecc--CCCCceeEEecCCCeEEEEeccCCchhhee------------------------------------
Confidence 68999999 678889999999999999998876544332
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
.+|.-.|.+++|+|...+|+++ .|+.|++||.+ .+.++.. +.+|..
T Consensus 219 -------------------------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~t-------lh~HKn 265 (464)
T KOG0284|consen 219 -------------------------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLAT-------LHGHKN 265 (464)
T ss_pred -------------------------ccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhh-------hhhccc
Confidence 6899999999999999999999 99999999999 6777754 788999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEE-e
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-D 346 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~-~ 346 (457)
.|..+.|+|++ ++|+++|.|..++++|+++.+.. .. +.+|...|+++.|+|-.. ++++| .
T Consensus 266 tVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl----~~-------------~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 266 TVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKEL----FT-------------YRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred eEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHH----HH-------------hhcchhhheeeccccccccceeeccC
Confidence 99999999999 99999999999999999975432 22 356788999999999654 45555 4
Q ss_pred cCcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 347 YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
||.|..|.+.. .+++..+ .+|...+ ++++|+|-|.+|++|+.|.++++|.-.
T Consensus 328 Dgsvvh~~v~~-~~p~~~i~~AHd~~i---------------wsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 328 DGSVVHWVVGL-EEPLGEIPPAHDGEI---------------WSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCceEEEeccc-cccccCCCcccccce---------------eeeeccccceeEeecCCCcceeeeccC
Confidence 69999999974 4444443 3566654 799999999999999999999999754
No 38
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-32 Score=231.53 Aligned_cols=303 Identities=18% Similarity=0.264 Sum_probs=239.2
Q ss_pred hHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCcccee
Q 012721 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (457)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (457)
+|.+.+....+...+.|.+.|.++... +++|++|++||.++||+..+.. .
T Consensus 88 EYv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~----------------------------~ 137 (423)
T KOG0313|consen 88 EYVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS----------------------------I 137 (423)
T ss_pred EEEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce----------------------------E
Confidence 344555566677888899999999999 8899999999999999987654 4
Q ss_pred eeeccCCccccccccccccCcEEEEEEEec-CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (457)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s-~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (457)
.++.||. ++|.+++|... +....|++++.|.++++|.++.++....
T Consensus 138 ~~~~Ght------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--------------------- 184 (423)
T KOG0313|consen 138 KTIVGHT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--------------------- 184 (423)
T ss_pred EEEecCC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---------------------
Confidence 5788999 88999988632 2234699999999999999988754321
Q ss_pred cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-c
Q 012721 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-Q 251 (457)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~ 251 (457)
+++.. .||...|-+++..+++..+++| .|.+|+||+..... .
T Consensus 185 -----------------------------------~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 185 -----------------------------------ALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred -----------------------------------HHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCccc
Confidence 11111 5999999999999999999999 99999999943110 0
Q ss_pred eee----------------eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc
Q 012721 252 CFN----------------IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315 (457)
Q Consensus 252 ~~~----------------~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 315 (457)
... ....+...+.+|.++|.++.|.+. ..+++++-|.+|+.||+.+++... ....
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~----~~~~--- 299 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS----TLTT--- 299 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee----eeec---
Confidence 000 000111247899999999999984 689999999999999999986542 2222
Q ss_pred ccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEE
Q 012721 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (457)
Q Consensus 316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (457)
...+.++.++|..++|++|+ |..|++||.+.+. -...++.+|.+.+ .++.|
T Consensus 300 -----------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkw 353 (423)
T KOG0313|consen 300 -----------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKW 353 (423)
T ss_pred -----------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheec
Confidence 25789999999999999986 5999999998743 2456788999987 58999
Q ss_pred cCCC-cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccccc
Q 012721 393 SGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 451 (457)
Q Consensus 393 s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 451 (457)
+|.. .+|++|+.|+++++||+++.+.++..+.+|...|.++.|+-.+.....|..+-.|
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLR 413 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEE
Confidence 9965 5678999999999999999977999999999999999999887777776655443
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=216.54 Aligned_cols=242 Identities=17% Similarity=0.306 Sum_probs=194.9
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|+..|++++|+|.|++||+|+.|.++.||.-..+ +++++.+++||+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHE-------- 105 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHE-------- 105 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccc--------
Confidence 49999999999999999999999999999996654 567899999999
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.+++| +++|.+||++++|+.|-+|.+..+...
T Consensus 106 ----nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEf--------------------------------------- 140 (312)
T KOG0645|consen 106 ----NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEF--------------------------------------- 140 (312)
T ss_pred ----cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcE---------------------------------------
Confidence 56999999 799999999999999999998855322
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc--ceeeeeecCCCcccCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDL 266 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~ 266 (457)
.|..++ ++|...|..+.|+|...+|+++ +|++|++|+-.... .+.+ ++.+|
T Consensus 141 ------------------ec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~-------tl~g~ 194 (312)
T KOG0645|consen 141 ------------------ECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ-------TLDGH 194 (312)
T ss_pred ------------------EEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEE-------EecCc
Confidence 233333 8999999999999999999999 99999999876222 2333 37899
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~- 345 (457)
...|.+++|++.| ..|++++.|++++||-..+.- - ..|...++.+.|. + ..|+++
T Consensus 195 ~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~--------~-------------~~~sr~~Y~v~W~-~-~~IaS~g 250 (312)
T KOG0645|consen 195 ENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL--------S-------------GMHSRALYDVPWD-N-GVIASGG 250 (312)
T ss_pred cceEEEEEecCCC-ceEEEecCCcceEeeeeccCc--------c-------------hhcccceEeeeec-c-cceEecc
Confidence 9999999999999 999999999999999866421 0 1245689999998 4 477776
Q ss_pred ecCcEEEEeccCC-CCce-----eEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecC
Q 012721 346 DYMNLKLWDIRMD-STPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 346 ~~~~i~~wd~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~ 414 (457)
.|+.|++|.-... ..+. ..-..|+.. |.++.|.|. ...|++|+.||.|++|.+.
T Consensus 251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---------------VNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---------------VNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCEEEEEEecCCCCCchHHHHHhhhcccccc---------------cceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4699999976521 1111 122344443 369999995 7899999999999999975
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9e-34 Score=236.70 Aligned_cols=252 Identities=12% Similarity=0.240 Sum_probs=206.1
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
..+.|+|+.+. ...+++|..|.+|+|||..+.. ++..+.||+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHt--------- 237 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHT--------- 237 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------HHHhhhcCC---------
Confidence 46899999997 6689999999999999987554 667899999
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+.|.|+.| +...+++|+.|.+|++||+++++....
T Consensus 238 ---GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t-------------------------------------- 272 (499)
T KOG0281|consen 238 ---GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT-------------------------------------- 272 (499)
T ss_pred ---CcEEeeec----cceEEEecCCCceEEEEeccCCchhhH--------------------------------------
Confidence 99999999 345999999999999999999865433
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
+ .+|...|..+.|+ ..+++++ .|.++.+||+..+. .+... ..+.+|...
T Consensus 273 ----------------------l-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-~it~r----rVLvGHrAa 322 (499)
T KOG0281|consen 273 ----------------------L-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-DITLR----RVLVGHRAA 322 (499)
T ss_pred ----------------------H-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch-HHHHH----HHHhhhhhh
Confidence 2 6889999999997 4588888 99999999998443 22111 236899999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
|..+.|+. ++|++++.|.+|++|++.+.+.. +++ .+|...|.|+.+. |+++++|+ |.
T Consensus 323 VNvVdfd~---kyIVsASgDRTikvW~~st~efv----Rtl-------------~gHkRGIAClQYr--~rlvVSGSSDn 380 (499)
T KOG0281|consen 323 VNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV----RTL-------------NGHKRGIACLQYR--DRLVVSGSSDN 380 (499)
T ss_pred eeeecccc---ceEEEecCCceEEEEeccceeee----hhh-------------hcccccceehhcc--CeEEEecCCCc
Confidence 99999875 68999999999999999997544 444 4577889988875 89999996 59
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCce--------e
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--------G 420 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~--------~ 420 (457)
+|++||+.. +.++..+.+|+..+ .++.| |.+.|++|+.||+|++||+.++..+ +
T Consensus 381 tIRlwdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl 442 (499)
T KOG0281|consen 381 TIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCL 442 (499)
T ss_pred eEEEEeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEecccccCCcccccchHH
Confidence 999999986 99999999999886 57888 6788999999999999999887432 3
Q ss_pred eEEecCCCcceeeee
Q 012721 421 ITVEAGKNENRKPIL 435 (457)
Q Consensus 421 ~~~~~~~~~v~~~~~ 435 (457)
..+..|.+.|..+.|
T Consensus 443 ~~lv~hsgRVFrLQF 457 (499)
T KOG0281|consen 443 RTLVEHSGRVFRLQF 457 (499)
T ss_pred HhhhhccceeEEEee
Confidence 344556666665554
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=223.38 Aligned_cols=321 Identities=12% Similarity=0.079 Sum_probs=241.1
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|+++|.+++.+|+.+++|||+.|..-.||+..+++ ...++.+|.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---------------------------~~~eltgHK------ 106 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---------------------------FAGELTGHK------ 106 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---------------------------ceeEecCCC------
Confidence 34599999999999999999999999999999999887 456889999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.|+++.| +.+|.+||+|..+|.|+||...++.....+... ..++.=+.|++. +.++..+
T Consensus 107 ------DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-~~dieWl~WHp~-a~illAG---------- 166 (399)
T KOG0296|consen 107 ------DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-VEDIEWLKWHPR-AHILLAG---------- 166 (399)
T ss_pred ------CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeecc-cCceEEEEeccc-ccEEEee----------
Confidence 89999999 799999999999999999999998776655411 122223334432 2222211
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..++.+..|.+... ...+++ .+|..++++-.|.|+|+.++++ .||+|++||+. .++.+..+ . ..-
T Consensus 167 ---~~DGsvWmw~ip~~---~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k-tg~p~~~~--~----~~e 232 (399)
T KOG0296|consen 167 ---STDGSVWMWQIPSQ---ALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK-TGQPLHKI--T----QAE 232 (399)
T ss_pred ---cCCCcEEEEECCCc---ceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecC-CCceeEEe--c----ccc
Confidence 13567888887643 333444 8999999999999999999999 99999999999 45444332 1 111
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE---EccCCCeEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLL 343 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~s~~g~~l~ 343 (457)
....+++.++..+ ..++.|+.++.+++-+..+++.... ... ..+. ....+...+.++. ++..-.+.|
T Consensus 233 ~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~----~n~--~~~~---l~~~~e~~~esve~~~~ss~lpL~A 302 (399)
T KOG0296|consen 233 GLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNC----NNG--TVPE---LKPSQEELDESVESIPSSSKLPLAA 302 (399)
T ss_pred cCcCCcccccccc-ceeEeccCCccEEEEccccceEEEe----cCC--CCcc---ccccchhhhhhhhhcccccccchhh
Confidence 3456788899888 8999999999999999888865421 110 0111 1122333444444 444556677
Q ss_pred EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 344 s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~ 422 (457)
+|+ ||+|.|||+.. .++. ..-.|+..+ +.+.|-+ ..+|++++.||.|+.||.++| ..+.+
T Consensus 303 ~G~vdG~i~iyD~a~-~~~R-~~c~he~~V---------------~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~ 363 (399)
T KOG0296|consen 303 CGSVDGTIAIYDLAA-STLR-HICEHEDGV---------------TKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFT 363 (399)
T ss_pred cccccceEEEEeccc-chhh-eeccCCCce---------------EEEEEcC-cchheeeccCceEEeeecccc-ceEEE
Confidence 776 59999999974 3443 344466544 7899988 789999999999999999999 89999
Q ss_pred EecCCCcceeeeeccCCcceec
Q 012721 423 VEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 423 ~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+.||..+|.+++.+|+++...+
T Consensus 364 y~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 364 YTGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred EecCchheeEEEEcCCCcEEEE
Confidence 9999999999999999876655
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=225.54 Aligned_cols=282 Identities=16% Similarity=0.247 Sum_probs=227.7
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
....+-|..|||||+||++|+.||-|-+|+..+++..+ .+ .|+--..|.-++
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------DL------------kYQAqd~fMMmd--------- 263 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------DL------------KYQAQDNFMMMD--------- 263 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhh-------hh------------hhhhhcceeecc---------
Confidence 46678999999999999999999999999999887530 00 111122233344
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
++|.|+.| +.|..++++|+.||.|++|.+.+|.+.
T Consensus 264 ---~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~Cl---------------------------------------- 298 (508)
T KOG0275|consen 264 ---DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCL---------------------------------------- 298 (508)
T ss_pred ---cceEEEee--cccHHHhhccCcCCcEEEEEEecchHH----------------------------------------
Confidence 89999999 799999999999999999999988544
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
+.+...|...|+|+.|+.|+..+.++ .|.++++.-++ .+++++ ++.+|+..
T Consensus 299 --------------------RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK-------EfrGHsSy 350 (508)
T KOG0275|consen 299 --------------------RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK-------EFRGHSSY 350 (508)
T ss_pred --------------------HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-------HhcCcccc
Confidence 33436899999999999999999998 99999999999 677764 37999999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEec-
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY- 347 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~- 347 (457)
|+...|.++| ..+++++.||+|++|+.++.++. .+|+. .+-..+|.++..-|. -..++.+..
T Consensus 351 vn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 351 VNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred ccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCC
Confidence 9999999999 99999999999999999998655 34433 112357888888775 345555554
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 427 (457)
++|++.++. ++.+..+.........+ .+++.||.|.++++.++|+.++.|.+.+| +...++..|.
T Consensus 415 ntv~imn~q--GQvVrsfsSGkREgGdF------------i~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhE 479 (508)
T KOG0275|consen 415 NTVYIMNMQ--GQVVRSFSSGKREGGDF------------INAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHE 479 (508)
T ss_pred CeEEEEecc--ceEEeeeccCCccCCce------------EEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeeccc
Confidence 999999985 88888886543322211 58999999999999999999999999999 7889999999
Q ss_pred CcceeeeeccCCcceec
Q 012721 428 NENRKPILQAAPRARRS 444 (457)
Q Consensus 428 ~~v~~~~~~p~~~~~~~ 444 (457)
..+-.++-||.....++
T Consensus 480 kdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 480 KDVIGLTHHPHQNLLAS 496 (508)
T ss_pred ccccccccCcccchhhh
Confidence 99999999998755443
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-31 Score=240.25 Aligned_cols=340 Identities=16% Similarity=0.185 Sum_probs=265.5
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK 108 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~ 108 (457)
.-.+.+++++.+||+++|++++..+.+++|++.+++ ++..++. |+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk---------------------------~irswKa~He------- 105 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK---------------------------LIRSWKAIHE------- 105 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccch---------------------------HhHhHhhccC-------
Confidence 346789999999999999999999999999999886 4566776 77
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc-ccccCCCCCceeccC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSFAHGYH 187 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 187 (457)
+||.-++| +|.+.++++|+.|+.+++||+.++.+...+... ...|+++.|.+.... ++.++.
T Consensus 106 -----~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~-gGvVssl~F~~~~~~~lL~sg~--------- 168 (775)
T KOG0319|consen 106 -----APVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH-GGVVSSLLFHPHWNRWLLASGA--------- 168 (775)
T ss_pred -----CCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecCC-CceEEEEEeCCccchhheeecC---------
Confidence 99999999 678889999999999999999999877666543 344777777766544 222222
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC------------------
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI------------------ 248 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~------------------ 248 (457)
.++.+++||++.... |+.+. ..|...|+++++.+|+..++++ .|..+.+||+..
T Consensus 169 ----~D~~v~vwnl~~~~t--cl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~ 241 (775)
T KOG0319|consen 169 ----TDGTVRVWNLNDKRT--CLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVR 241 (775)
T ss_pred ----CCceEEEEEcccCch--HHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEE
Confidence 466899999986554 66666 8899999999999999888887 999999999864
Q ss_pred --------------------------------------------------------------------------------
Q 012721 249 -------------------------------------------------------------------------------- 248 (457)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (457)
T Consensus 242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG 321 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG 321 (775)
T ss_pred echhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence
Q ss_pred ----------------------CcceeeeeecCC---CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721 249 ----------------------SDQCFNIVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (457)
Q Consensus 249 ----------------------~~~~~~~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~ 303 (457)
....+++++.+- .-+.+|.+.|.++....+| .+|++|+.|.++++|.++.+...
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcch
Confidence 000001111000 1146788889998866677 89999999999999988443110
Q ss_pred --------------------------------ccccccccccc---cccCc----ccceeccccceEEEEEccCCCeEEE
Q 012721 304 --------------------------------DHSARILRDAA---ESHGS----KSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 304 --------------------------------~~~~~~~~~~~---~~~~~----~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
+..+++|.... ..+.. ..+...|...|++++++|+.+++|+
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 11223332200 00000 1234689999999999999999999
Q ss_pred Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 423 (457)
|+. .+.++|+++ ....+.++.+|...+ .++.|+|..+.++|+|.|++|+||.+.+. .+..++
T Consensus 481 ~SqDktaKiW~le-~~~l~~vLsGH~RGv---------------w~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~ 543 (775)
T KOG0319|consen 481 GSQDKTAKIWDLE-QLRLLGVLSGHTRGV---------------WCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTF 543 (775)
T ss_pred cccccceeeeccc-CceEEEEeeCCccce---------------EEEEeccccceeEeccCCceEEEEEeccc-eeeeee
Confidence 985 999999998 489999999999876 79999999999999999999999999999 899999
Q ss_pred ecCCCcceeeeeccCCcceecc
Q 012721 424 EAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 424 ~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
+||...|..+.|-.++....|+
T Consensus 544 eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 544 EGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred cCccceeEeeeeeeCCcEEEec
Confidence 9999999999999888877774
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.3e-30 Score=261.51 Aligned_cols=283 Identities=21% Similarity=0.299 Sum_probs=212.8
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
....|.+.|.+++|+|+|++||+|+.|+.|+||++...... +. ........+.++
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-------------~~------~~~~~~~~~~~~------ 532 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-------------GR------DIHYPVVELASR------ 532 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-------------cc------ccccceEEeccc------
Confidence 34558999999999999999999999999999997642210 00 000011122222
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++|.+ ..+.+|++++.|++|++||+.+++....+
T Consensus 533 -------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~~--------------------------------- 571 (793)
T PLN00181 533 -------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTEM--------------------------------- 571 (793)
T ss_pred -------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEEe---------------------------------
Confidence 5689999963 45779999999999999999876543321
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
.+|...|++++|+| ++.+|++| .|+.|++||++ .+..+..+ .
T Consensus 572 ----------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~~-------~ 615 (793)
T PLN00181 572 ----------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-QGVSIGTI-------K 615 (793)
T ss_pred ----------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-CCcEEEEE-------e
Confidence 57999999999997 78899999 99999999998 55555442 3
Q ss_pred CCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 265 DLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 265 ~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
. ...+.++.|++ ++ .+|++|+.||.|++||++..+.. . ..+.+|...|.++.|. ++.+|+
T Consensus 616 ~-~~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~------~----------~~~~~h~~~V~~v~f~-~~~~lv 676 (793)
T PLN00181 616 T-KANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLP------L----------CTMIGHSKTVSYVRFV-DSSTLV 676 (793)
T ss_pred c-CCCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCcc------c----------eEecCCCCCEEEEEEe-CCCEEE
Confidence 2 35789999965 56 99999999999999999875311 0 1134577899999997 677888
Q ss_pred EEe-cCcEEEEeccCC-----CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 344 SRD-YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 344 s~~-~~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
+++ |+.|++||++.. ..++..+.+|...+ ..++|+|++.+|++|+.|+.|++|+.....
T Consensus 677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 776 599999999742 35677888887654 578999999999999999999999987552
Q ss_pred cee------------eEEecCCCcceeeeeccCCcceecc
Q 012721 418 AGG------------ITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 418 ~~~------------~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
... .....+...|.+++|+|++.....|
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~ 781 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA 781 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence 110 1123455679999999999877663
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.4e-33 Score=220.59 Aligned_cols=275 Identities=15% Similarity=0.196 Sum_probs=232.6
Q ss_pred CCCccccCCceEEEEECC---CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCC
Q 012721 25 PDEELQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (457)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~---~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (457)
|...-+|+.+|-.++||| +|-+|++++.||.--+-+-+++. .+.+|.||.
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd---------------------------wigtfeghk 59 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD---------------------------WIGTFEGHK 59 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC---------------------------cEEeeeccC
Confidence 444556999999999987 88899999999987776666555 678999999
Q ss_pred ccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 102 ~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
+.|.+... +.+...-++++.|-+.++||.-+|..+..
T Consensus 60 ------------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs----------------------------- 96 (334)
T KOG0278|consen 60 ------------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS----------------------------- 96 (334)
T ss_pred ------------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh-----------------------------
Confidence 88999988 56777778899999999999988865432
Q ss_pred ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
..|..-|.+++|+.|.++|++| .++.++|||++..... |
T Consensus 97 ---------------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-------p 136 (334)
T KOG0278|consen 97 ---------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-------P 136 (334)
T ss_pred ---------------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-------c
Confidence 4678889999999999999999 9999999999843332 2
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
.++.+|.+.|..+.|.... +.|+++..|++||+||.+++... +.+.. ..+|+++.++++|+
T Consensus 137 ~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGR 197 (334)
T ss_pred hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCC
Confidence 4578999999999999887 88999999999999999998654 33333 36899999999999
Q ss_pred eEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721 341 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (457)
Q Consensus 341 ~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 420 (457)
+|..+..+.|.+||... -.+++.+....+. .+.+++|+..++++|++|..++.||..+|+...
T Consensus 198 ilTia~gssV~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 198 ILTIAYGSSVKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred EEEEecCceeEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceee
Confidence 99998889999999986 6778777766554 589999999999999999999999999995544
Q ss_pred eEEecCCCcceeeeeccCCcceecc
Q 012721 421 ITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 421 ~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
.-..+|.+||-+|.|+|+|-..++|
T Consensus 261 ~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 261 SYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred ecccCCCCceEEEEECCCCceeecc
Confidence 4459999999999999999998884
No 46
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=233.72 Aligned_cols=304 Identities=19% Similarity=0.274 Sum_probs=228.4
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|+..|+++++.|.|..|++|+.|.+|++||+...... .+..++++.-+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------------------~~~fr~l~P~E------- 213 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-----------------------MRSFRQLQPCE------- 213 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-----------------------chhhhccCccc-------
Confidence 347889999999999999999999999999999876541 11222232222
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
...|++++| ++.|..|++.+.....+|+|-...+.....+..
T Consensus 214 ----~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD-------------------------------- 255 (641)
T KOG0772|consen 214 ----THQINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD-------------------------------- 255 (641)
T ss_pred ----ccccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeeccc--------------------------------
Confidence 134999999 788889999888889999997765554433211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
-.|-|+.. .++|...++|.+|+|+ .+.|+++ .|++++|||++......+++..++ ..+.
T Consensus 256 -------QYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~ 316 (641)
T KOG0772|consen 256 -------QYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGK 316 (641)
T ss_pred -------hhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCc
Confidence 11112211 1799999999999995 4566777 999999999997777777765543 3456
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLS 344 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s 344 (457)
.-.++.++|+++| ++||+|+.||.|.+|+.++.... ..+. .-.+|.. .|+++.||++|++|++
T Consensus 317 Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~----p~~~----------vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 317 RVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR----PVMK----------VKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred ccCceeeecCCCc-chhhhcccCCceeeeecCCcccc----cceE----------eeeccCCCCceeEEEeccccchhhh
Confidence 6788999999999 99999999999999998654211 1111 1134555 8999999999999999
Q ss_pred Ee-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC------CCcEEEEecCCCC
Q 012721 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGS 417 (457)
Q Consensus 345 ~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~------dg~i~iw~~~~~~ 417 (457)
-+ |+++++||++...+++....+-... |+-+.++||||.++|++|.. .|.+++||..+-
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~- 447 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL- 447 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCCCceEEEEeccce-
Confidence 65 5999999999878888776654432 22268999999999999864 568999998887
Q ss_pred ceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721 418 AGGITVEAGKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
...+.+.-....|..+.|||.-...-.|.++
T Consensus 448 d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 448 DTVYKIDISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred eeEEEecCCCceEEEEeecchhhheeeecCC
Confidence 6677777778889999999986555554444
No 47
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-31 Score=218.77 Aligned_cols=307 Identities=17% Similarity=0.211 Sum_probs=231.1
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|..++++.+|++||.++|||+.|..|+|.|++..-.... ...+. ....+..| -.+++|-.|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~--~~~~qa~h---PvIRTlYDH~------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMI--SGDTQARH---PVIRTLYDHV------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhc--cCCcccCC---ceEeehhhcc-------
Confidence 34999999999999999999999999999999873221000 00000 00001112 2667777887
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|+++.| .|....|++++.|++|+++|+..-..++-
T Consensus 173 -----devn~l~F--HPre~ILiS~srD~tvKlFDfsK~saKrA------------------------------------ 209 (430)
T KOG0640|consen 173 -----DEVNDLDF--HPRETILISGSRDNTVKLFDFSKTSAKRA------------------------------------ 209 (430)
T ss_pred -----Ccccceee--cchhheEEeccCCCeEEEEecccHHHHHH------------------------------------
Confidence 78999999 57788999999999999999875432211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.++ .....+|.+++|+|.|.+|+.| +-..+++||++ .-++.-.-. .-..|.
T Consensus 210 ---------------------~K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsan----Pd~qht 261 (430)
T KOG0640|consen 210 ---------------------FKV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSAN----PDDQHT 261 (430)
T ss_pred ---------------------HHH--hhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeecC----cccccc
Confidence 111 1234589999999999999999 88999999999 555553321 246799
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEEEEEccCCCeEEEEe
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~ 346 (457)
+.|+++.+++.+ ++.++++.||.|++||=-++++. +.+.. .|. ..|.+..|..+|+||++.+
T Consensus 262 ~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~------------AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 262 GAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGN------------AHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred cceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHh------------hcCCceeeeEEEccCCeEEeecC
Confidence 999999999999 99999999999999997776544 44433 222 5799999999999999765
Q ss_pred -cCcEEEEeccCCCCceeEeeeccccc-cccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEE
Q 012721 347 -YMNLKLWDIRMDSTPVATFKIHEHLR-PKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 347 -~~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~ 423 (457)
|..+++|.+.+ ++++..+.+..... ... .+...|+....|++.-.+ .+.+.-||.+++.+.....
T Consensus 325 ~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~-----------rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s 392 (430)
T KOG0640|consen 325 KDSTVKLWEIST-GRMLKEYTGAGTTGRQKH-----------RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS 392 (430)
T ss_pred CcceeeeeeecC-CceEEEEecCCcccchhh-----------hhhhhhcCccceEEccccccCceeeccccchhhhhhcc
Confidence 69999999987 89998888753211 000 046778877888877665 5789999999997777777
Q ss_pred ecCCCcceeeeeccCCcceecccccccccc
Q 012721 424 EAGKNENRKPILQAAPRARRSSLSNLTRGL 453 (457)
Q Consensus 424 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 453 (457)
.+|.++++.+.-+|..|.... .+.+++.
T Consensus 393 lgHn~a~R~i~HSP~~p~FmT--csdD~ra 420 (430)
T KOG0640|consen 393 LGHNGAVRWIVHSPVEPAFMT--CSDDFRA 420 (430)
T ss_pred cCCCCCceEEEeCCCCCceee--eccccee
Confidence 899999999999999999988 4444443
No 48
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.7e-30 Score=240.13 Aligned_cols=299 Identities=14% Similarity=0.167 Sum_probs=211.3
Q ss_pred hHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCcccee
Q 012721 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (457)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (457)
+|+++|+. +...-.|-..|.....++++..+++++.+.....|+..++... ..+...|- .....
T Consensus 5 k~rh~~g~--~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-------~~~~~~G~-------~~~~~ 68 (493)
T PTZ00421 5 RFRHTQGV--PARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-------LKHTDYGK-------LASNP 68 (493)
T ss_pred cccccccc--cCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEE-------eecccccc-------CCCCC
Confidence 56677765 4444446778888888888777788888888888886554321 00000000 00011
Q ss_pred eeeccCCccccccccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (457)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (457)
..+.+|. +.|.+++| +| ++++|++++.|++|++||+.++.....
T Consensus 69 ~~l~GH~------------~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--------------------- 113 (493)
T PTZ00421 69 PILLGQE------------GPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQN--------------------- 113 (493)
T ss_pred ceEeCCC------------CCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCccccc---------------------
Confidence 2467787 89999999 55 778999999999999999976532110
Q ss_pred cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcc
Q 012721 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ 251 (457)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~ 251 (457)
...++..+ .+|...|.+++|+|++ ++|+++ .|+.|+|||++ .+.
T Consensus 114 --------------------------------~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~ 159 (493)
T PTZ00421 114 --------------------------------ISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGK 159 (493)
T ss_pred --------------------------------cCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCe
Confidence 00122223 7899999999999975 688888 99999999998 455
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc-ce
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SI 330 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v 330 (457)
.... +.+|...|.+++|+|++ .+|++++.|++|++||+++++.. ..+ .+|.+ .+
T Consensus 160 ~~~~-------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl-------------~~H~~~~~ 214 (493)
T PTZ00421 160 AVEV-------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSV-------------EAHASAKS 214 (493)
T ss_pred EEEE-------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEE-------------ecCCCCcc
Confidence 4443 57799999999999999 99999999999999999987533 222 23333 34
Q ss_pred EEEEEccCCCeEEEEe-----cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-C
Q 012721 331 SDIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-Y 404 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~-----~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~ 404 (457)
..+.|.+++..+++++ |+.|++||++...+++.....+.... +....|++|+.+|++++ .
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeC
Confidence 5678899887777532 48999999986455555444332211 13567899999999887 5
Q ss_pred CCcEEEEecCCCCceeeEEe-cCCCcceeeeeccC
Q 012721 405 SNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAA 438 (457)
Q Consensus 405 dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~p~ 438 (457)
|+.|++||+.++ ......+ .+..++..++|.|.
T Consensus 281 Dg~Iriwdl~~~-~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 281 EGNIRCFELMNE-RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCeEEEEEeeCC-ceEEEeeccCCCCCcceEeccc
Confidence 999999999988 4444443 35567888888875
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=9.3e-30 Score=205.47 Aligned_cols=298 Identities=13% Similarity=0.153 Sum_probs=230.8
Q ss_pred CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
|....+|..+++.+.++.+|.+|.+++.|.++.+|-...++ .+-++.||.
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---------------------------rlGty~GHt--- 52 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---------------------------RLGTYDGHT--- 52 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---------------------------eeeeecCCC---
Confidence 45566799999999999999999999999999999987776 457899999
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
+.|.++.. +.+.+++++|+.|.++++||+.+|+.+...+.+ ..|..+.|+.....++.+..
T Consensus 53 ---------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--~~Vk~~~F~~~gn~~l~~tD------ 113 (327)
T KOG0643|consen 53 ---------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN--SPVKRVDFSFGGNLILASTD------ 113 (327)
T ss_pred ---------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC--CeeEEEeeccCCcEEEEEeh------
Confidence 99999999 688899999999999999999999988776543 34555555544333222211
Q ss_pred ccCCccccccceEEEeccCcc----ccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721 185 GYHLEWTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
........+.++++.... ...+...+ ..+...++.+-|.|-+++|++| .||.|.+||.++..+.+..
T Consensus 114 ---~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s---- 185 (327)
T KOG0643|consen 114 ---KQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS---- 185 (327)
T ss_pred ---hhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec----
Confidence 111222367778877433 44555555 5677899999999999999999 9999999999954455543
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 339 (457)
.+.|...|+.+.++++. .++++++.|.+-++||+++-... +++.. ..+|++.+++|..
T Consensus 186 ---~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP~~ 243 (327)
T KOG0643|consen 186 ---DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISPLL 243 (327)
T ss_pred ---hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceeccccc
Confidence 46788999999999999 99999999999999999986554 55554 4689999999988
Q ss_pred CeEEEEec---CcEEEEeccC-----------CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721 340 QHLLSRDY---MNLKLWDIRM-----------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 340 ~~l~s~~~---~~i~~wd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
.+++.|+. ..|.--+.+. ..+.+..+++|-+++ .+++|+|||+..++|++|
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGGED 308 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGGED 308 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc---------------ceeEECCCCcccccCCCC
Confidence 88776542 2332222221 024566778888876 599999999999999999
Q ss_pred CcEEEEecCCC
Q 012721 406 NLLRIFSHGVG 416 (457)
Q Consensus 406 g~i~iw~~~~~ 416 (457)
|.|++.-+...
T Consensus 309 G~VR~h~Fd~~ 319 (327)
T KOG0643|consen 309 GYVRLHHFDSN 319 (327)
T ss_pred ceEEEEEeccc
Confidence 99999877644
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4.5e-30 Score=242.46 Aligned_cols=246 Identities=20% Similarity=0.350 Sum_probs=203.0
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.+|...|++++|+|+++++++|+.|++|+|||+.... ..+.++++|.
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--------------------------~~~~~l~gH~------- 246 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--------------------------RNLKTLKGHS------- 246 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--------------------------eEEEEecCCC-------
Confidence 5699999999999999999999999999999994332 2678899999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|++++| +++++++++|+.|++|++||+.++++...+
T Consensus 247 -----~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l----------------------------------- 284 (456)
T KOG0266|consen 247 -----TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECVRKL----------------------------------- 284 (456)
T ss_pred -----CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEEEee-----------------------------------
Confidence 88999999 688899999999999999999997665442
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc--eeeeeecCCCcccC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~ 265 (457)
.+|...|++++|++++.+|+++ .|+.|++||+. .+. +... +.+
T Consensus 285 --------------------------~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-~~~~~~~~~-------~~~ 330 (456)
T KOG0266|consen 285 --------------------------KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-TGSKLCLKL-------LSG 330 (456)
T ss_pred --------------------------eccCCceEEEEECCCCCEEEEcCCCccEEEEECC-CCceeeeec-------ccC
Confidence 6899999999999999999999 99999999999 454 2332 333
Q ss_pred CCC--ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 266 LTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 266 ~~~--~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
+.. .++++.|+|++ .+++++..|+.+++||++.+... ..+..|... ...+.+...++.+++++
T Consensus 331 ~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 331 AENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNL----------VRCIFSPTLSTGGKLIY 395 (456)
T ss_pred CCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcce----eeecccCCc----------ceeEecccccCCCCeEE
Confidence 433 59999999999 99999999999999999987544 333332111 01344556678999999
Q ss_pred EEec-CcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecC
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG 414 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~ 414 (457)
+|+. +.|++||+.+ +..+..+.+| ...+ ..+.++|...++++++ .|+.+++|..+
T Consensus 396 sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~---------------~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSS-GGILQRLEGHSKAAV---------------SDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCceEEEEeCCc-cchhhhhcCCCCCce---------------eccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9975 9999999986 7888888888 4443 5799999999999998 68999999864
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=204.36 Aligned_cols=271 Identities=16% Similarity=0.206 Sum_probs=217.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|.+++|+-+|..||+|+.|+++++|+++..... .....++|.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~------- 64 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT------- 64 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-------
Confidence 448899999999999999999999999999999876532 223467787
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|-.++|.| +...+|++++.|.+|++||++.+++...+..
T Consensus 65 -----~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~--------------------------------- 105 (313)
T KOG1407|consen 65 -----DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIET--------------------------------- 105 (313)
T ss_pred -----cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEeec---------------------------------
Confidence 7899999985 5566999999999999999999887655431
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
...-.-+.|+|+|++++.+ .|..|.+.|.+ ..+.... ....
T Consensus 106 -----------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r-~~~~~~~--------~~~~ 147 (313)
T KOG1407|consen 106 -----------------------------KGENINITWSPDGEYIAVGNKDDRITFIDAR-TYKIVNE--------EQFK 147 (313)
T ss_pred -----------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEec-ccceeeh--------hccc
Confidence 1122357899999999999 99999999998 3433332 2233
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
..+..++|+-++ .+++.....|.|.|.....-+.. ..+.+|.....|+.|+|+|+|+|+|+
T Consensus 148 ~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv-----------------~si~AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 148 FEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV-----------------QSIKAHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred ceeeeeeecCCC-CEEEEecCCceEEEEeccccccc-----------------cccccCCcceEEEEECCCCceEeeccc
Confidence 567788898776 77777777799999877653311 22466788999999999999999997
Q ss_pred cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
|-.+.+||++. --+++.+..++-++ ..++||-||++||+|++|..|-|=++++|. ....+ .+
T Consensus 210 DAlvSLWD~~E-LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd-~~~eI-~~ 271 (313)
T KOG1407|consen 210 DALVSLWDVDE-LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGD-RVWEI-PC 271 (313)
T ss_pred cceeeccChhH-hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCC-eEEEe-ec
Confidence 59999999974 67788888887765 789999999999999999999999999993 33433 47
Q ss_pred CCcceeeeeccCCcceec
Q 012721 427 KNENRKPILQAAPRARRS 444 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~ 444 (457)
.+|...|+|||..+..+.
T Consensus 272 ~~~t~tVAWHPk~~LLAy 289 (313)
T KOG1407|consen 272 EGPTFTVAWHPKRPLLAY 289 (313)
T ss_pred cCCceeEEecCCCceeeE
Confidence 899999999999987776
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.8e-30 Score=222.82 Aligned_cols=303 Identities=16% Similarity=0.233 Sum_probs=230.8
Q ss_pred ccccccccccchhhHHhhhcCCCCCCccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhc
Q 012721 2 ILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (457)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (457)
.+.+.+.++..-|+--.. +.. ....+.|++++|+|... -+|+.+. -.+.||+..+....
T Consensus 2 ~~~~~~t~e~~~w~~~~~-----~~~-~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~------------- 61 (487)
T KOG0310|consen 2 ALPQSETPEIRYWRQETF-----PPV-HKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR------------- 61 (487)
T ss_pred CCCcCCCccchhhhhhcc-----ccc-ccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-------------
Confidence 344555555555643221 111 22357999999999553 2444443 46999998766532
Q ss_pred ccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCc
Q 012721 81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF 160 (457)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~ 160 (457)
.++.... ..|.++.| -.||.++++|...|.|+++|+.+...
T Consensus 62 --------------k~~srFk------------~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~i----------- 102 (487)
T KOG0310|consen 62 --------------KTFSRFK------------DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVI----------- 102 (487)
T ss_pred --------------hhHHhhc------------cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHH-----------
Confidence 2233333 77999999 58999999999999999999655322
Q ss_pred eeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CC
Q 012721 161 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DD 238 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d 238 (457)
++.+ .+|+.+|..+.|+|++ ..+++| +|
T Consensus 103 -------------------------------------------------LR~~-~ah~apv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 103 -------------------------------------------------LRQL-YAHQAPVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred -------------------------------------------------HHHH-hhccCceeEEEecccCCeEEEecCCC
Confidence 2222 7899999999999955 455667 89
Q ss_pred CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccC
Q 012721 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 318 (457)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 318 (457)
+.+++||+. .... +. .+.+|.+.|.|.+|+|-.+.++++|+.||.|++||++.... .+.+
T Consensus 133 ~v~k~~d~s-~a~v-~~------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~e------- 192 (487)
T KOG0310|consen 133 KVVKYWDLS-TAYV-QA------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVE------- 192 (487)
T ss_pred ceEEEEEcC-CcEE-EE------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEE-------
Confidence 999999998 3332 22 37899999999999998767999999999999999998521 2222
Q ss_pred cccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE
Q 012721 319 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 398 (457)
Q Consensus 319 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 398 (457)
-.|..+|..+.+-|.|..|++++.+.|++||+..+++.+..+..|...+ +++++..++..
T Consensus 193 -----lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~r 252 (487)
T KOG0310|consen 193 -----LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTR 252 (487)
T ss_pred -----ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceE---------------EEEEeecCCce
Confidence 2467899999999999999999989999999987677777776677655 89999999999
Q ss_pred EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccccccccc
Q 012721 399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (457)
Q Consensus 399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 455 (457)
|++|+-|+.|++||+.+- +.... -.-.+||-+++.+|+.....-|++|..-..||
T Consensus 253 LlS~sLD~~VKVfd~t~~-Kvv~s-~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNY-KVVHS-WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EeecccccceEEEEccce-EEEEe-eecccceeeEEecCCCceEEEecccceeeeeh
Confidence 999999999999996655 33333 45689999999999999999999998765553
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-30 Score=205.71 Aligned_cols=244 Identities=19% Similarity=0.329 Sum_probs=199.0
Q ss_pred cCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 31 DVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 31 h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
-.+.+..++|+++. +.+++++.||+++|||+.... .++..++.|.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------------------~Pi~~~kEH~-------- 104 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------------------KPIHKFKEHK-------- 104 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------------------cchhHHHhhh--------
Confidence 36889999999954 788899999999999954332 2677889998
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.++.|.+ ..+..++++|.|++|++|+...++.+..
T Consensus 105 ----~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~T------------------------------------- 142 (311)
T KOG0277|consen 105 ----REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQT------------------------------------- 142 (311)
T ss_pred ----hheEEecccc-ccceeEEeeccCCceEeecCCCCcceEe-------------------------------------
Confidence 6699999963 4567888899999999999877654432
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
+ .+|...|+...|+| ..+.++++ .|+.+++||++..++... ++.|.
T Consensus 143 -----------------------f-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~ 190 (311)
T KOG0277|consen 143 -----------------------F-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHN 190 (311)
T ss_pred -----------------------e-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEecc
Confidence 2 78999999999999 57788888 999999999997766554 46788
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEe
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~ 346 (457)
..|.|+.|+.-..+++++|+.|+.|+.||+++-+. .++ .+.+|.-.|..++|||.. ..||+++
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~-----------eL~gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLF-----------ELNGHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccc-----cce-----------eecCCceEEEEEecCcchhhHhhhcc
Confidence 99999999987768999999999999999998541 111 246788899999999974 5677888
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEec
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~ 413 (457)
. -++++||...+...+.++..|...+ ..+.||+ ++.++|+.+.|+.++||+-
T Consensus 255 YDmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 255 YDMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence 5 9999999986566777777787765 5788887 5789999999999999984
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-30 Score=204.95 Aligned_cols=231 Identities=19% Similarity=0.227 Sum_probs=188.7
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
++.+..|+|+++. .+.+++++.||++++||....
T Consensus 60 ~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~--------------------------------------------- 93 (311)
T KOG0277|consen 60 EDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMP--------------------------------------------- 93 (311)
T ss_pred ccceeEeeecCCC-cceEEEEecCceEEEeccCCC---------------------------------------------
Confidence 3789999997533 458889999999999994321
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
..+++.+ +.|..+|.++.|++ +.+.++++ .|++|++|+.. ....+++ +.+|...|
T Consensus 94 --------------s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~I 150 (311)
T KOG0277|consen 94 --------------SKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSCI 150 (311)
T ss_pred --------------CcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccEE
Confidence 1334444 78999999999998 56667777 99999999998 6666765 78999999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEe-cC
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YM 348 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~-~~ 348 (457)
....|+|..+++++++|.|+++++||++..... . .+..|...|.++.|+.-. ..|++|+ |+
T Consensus 151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~-------------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----M-------------SIEAHNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred EEEecCCCCCCeEEEccCCceEEEEEecCCCce----e-------------EEEeccceeEeecccccCCcEEEecCCCc
Confidence 999999988899999999999999999874211 1 135577889999999854 5556665 59
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 427 (457)
.|+.||+++-..++..+.+|.-.+ ..+.|||. ...||+++.|-+++|||...+...+.+..-|.
T Consensus 214 ~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 214 LVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred eEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 999999998788899999998766 78999997 56899999999999999997767778888999
Q ss_pred CcceeeeeccCCcceec
Q 012721 428 NENRKPILQAAPRARRS 444 (457)
Q Consensus 428 ~~v~~~~~~p~~~~~~~ 444 (457)
.-+..+.|++-.+....
T Consensus 279 EFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVA 295 (311)
T ss_pred eEEeccccccccCceee
Confidence 99999999987655443
No 55
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=7.6e-30 Score=214.04 Aligned_cols=241 Identities=15% Similarity=0.250 Sum_probs=210.8
Q ss_pred cCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (457)
Q Consensus 86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 165 (457)
.+|..|++.+.+++|. +.|.++++ .|.++.|++|+.|++|+|||+.+|+++..+
T Consensus 136 eWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lkltl------------ 189 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLTL------------ 189 (460)
T ss_pred cccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEee------------
Confidence 6788899999999999 89999999 677889999999999999999999876553
Q ss_pred eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw 244 (457)
.+|-..|..+++++...+++++ .|+.|+.|
T Consensus 190 -------------------------------------------------tGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 190 -------------------------------------------------TGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred -------------------------------------------------cchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 6888899999999999999999 99999999
Q ss_pred EcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
|++ ..+.++. +.+|-..|.|++.+|.- ..|++|+.|.++++||+++.... . .+.
T Consensus 221 DLe-~nkvIR~-------YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~-------------~l~ 274 (460)
T KOG0285|consen 221 DLE-YNKVIRH-------YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----H-------------VLS 274 (460)
T ss_pred ech-hhhhHHH-------hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----E-------------Eec
Confidence 999 5666643 68999999999999998 99999999999999999996432 2 246
Q ss_pred ccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
+|...|.++.+.|-...+++|+ |++|++||++. ++....+..|...+ .+++.+|....+|+++
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fASas 338 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFASAS 338 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhccC
Confidence 7889999999999877888887 59999999986 88888888887765 6899999999999999
Q ss_pred CCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 404 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 404 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
.|. |+-|++..| .....+.+|.+-+++++.+.|+-....|
T Consensus 339 ~dn-ik~w~~p~g-~f~~nlsgh~~iintl~~nsD~v~~~G~ 378 (460)
T KOG0285|consen 339 PDN-IKQWKLPEG-EFLQNLSGHNAIINTLSVNSDGVLVSGG 378 (460)
T ss_pred Ccc-ceeccCCcc-chhhccccccceeeeeeeccCceEEEcC
Confidence 875 899999999 6667799999999999999988766553
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.2e-30 Score=216.55 Aligned_cols=237 Identities=19% Similarity=0.345 Sum_probs=193.7
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|+++|.|+.|. .+.|++|+.|.+|+|||+++++. +.++-+|.
T Consensus 233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~---------------------------l~tlihHc------ 277 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP---------------------------LNTLIHHC------ 277 (499)
T ss_pred hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch---------------------------hhHHhhhc------
Confidence 34699999999998 67999999999999999999884 46788888
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.|..+.| .+| ++++++.|.+|.+||+....-
T Consensus 278 ------eaVLhlrf---~ng-~mvtcSkDrsiaVWdm~sps~-------------------------------------- 309 (499)
T KOG0281|consen 278 ------EAVLHLRF---SNG-YMVTCSKDRSIAVWDMASPTD-------------------------------------- 309 (499)
T ss_pred ------ceeEEEEE---eCC-EEEEecCCceeEEEeccCchH--------------------------------------
Confidence 88999999 334 999999999999999876421
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..+.+++ .+|...|+.+.|+ .++++++ .|.+|++|++. ..+.+++ +.+|
T Consensus 310 -------------------it~rrVL-vGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvRt-------l~gH 359 (499)
T KOG0281|consen 310 -------------------ITLRRVL-VGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVRT-------LNGH 359 (499)
T ss_pred -------------------HHHHHHH-hhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeehh-------hhcc
Confidence 1233333 7999999999996 5599999 99999999998 6777765 7899
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...|.|+.+. + +++++|+.|.+|++||+..|++. +++++ |..-|.++.|. .+.|++|.
T Consensus 360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cL----RvLeG-------------HEeLvRciRFd--~krIVSGa 417 (499)
T KOG0281|consen 360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACL----RVLEG-------------HEELVRCIRFD--NKRIVSGA 417 (499)
T ss_pred cccceehhcc--C-eEEEecCCCceEEEEeccccHHH----HHHhc-------------hHHhhhheeec--Cceeeecc
Confidence 9999988865 4 89999999999999999998765 55554 67789999996 67899987
Q ss_pred c-CcEEEEeccCCCC--------ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 347 Y-MNLKLWDIRMDST--------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
. |+|++||+..... ++..+..|.+.+ +.+.| |...|++.+.|.+|.|||+.++
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRV---------------FrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV---------------FRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhcccee---------------EEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 5 9999999975322 233344555543 57777 7788999999999999999988
No 57
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=202.06 Aligned_cols=283 Identities=17% Similarity=0.208 Sum_probs=218.1
Q ss_pred cCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 31 h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
-.+.|.+|+||| ...+++.|+-||+||+|+++..... .-+....|.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------------------------~~ka~~~~~-------- 72 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------------------------VPKAQQSHD-------- 72 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc-------------------------cchhhhccC--------
Confidence 468999999999 5677778999999999999874321 002334455
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
++|.+++| +.+|..+++|+.|+.+++||+.+++...+
T Consensus 73 ----~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v------------------------------------- 109 (347)
T KOG0647|consen 73 ----GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV------------------------------------- 109 (347)
T ss_pred ----CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee-------------------------------------
Confidence 99999999 78999999999999999999999866543
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..|..+|.++.|-+.. ..|++| .|++|+.||.+ ....+..+.+
T Consensus 110 -------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~pv~t~~L-------- 155 (347)
T KOG0647|consen 110 -------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNPVATLQL-------- 155 (347)
T ss_pred -------------------------eecccceeEEEEecCCCcceeEecccccceeecccC-CCCeeeeeec--------
Confidence 5799999999997654 489999 99999999999 4545544332
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.+.++++..- . .+++.+..+..|.+|+++++. ..++. ...|. .-.+.+++..++.+..+.|+
T Consensus 156 PeRvYa~Dv~--~-pm~vVata~r~i~vynL~n~~------te~k~-~~SpL--------k~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 156 PERVYAADVL--Y-PMAVVATAERHIAVYNLENPP------TEFKR-IESPL--------KWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred cceeeehhcc--C-ceeEEEecCCcEEEEEcCCCc------chhhh-hcCcc--------cceeeEEEEEecCCceEeee
Confidence 3566666543 2 678888999999999998763 22222 11121 24588999988887778777
Q ss_pred -cCcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 347 -YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 347 -~~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
+|.+-+..++.. .+.-..++.|..... -.+.++.|.+++|+|.-..|+|++.||++.+||-+.. ..+...+
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~ 290 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSE 290 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccC
Confidence 499999988751 244567777765321 1235788899999999999999999999999998877 6788889
Q ss_pred cCCCcceeeeeccCCcceeccccc
Q 012721 425 AGKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
.|..||++-.|+.+|...+-.+++
T Consensus 291 ~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 291 THPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred cCCCccceeEecCCCCEEEEEeec
Confidence 999999999999999887765554
No 58
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=224.92 Aligned_cols=352 Identities=16% Similarity=0.177 Sum_probs=246.1
Q ss_pred CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
+.+...|..+|+++.|+..|..||+|+.|+.|.+||+-...- ...++||.
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G---------------------------l~rL~GHk--- 149 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG---------------------------LFRLRGHK--- 149 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee---------------------------eEEeecch---
Confidence 344556999999999999999999999999999999875542 35789999
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecC--------------------CCceeee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH--------------------FPFVSSE 164 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~--------------------~~~~~~~ 164 (457)
+.|+..-| ..+.+.+++.+.|+.|++||+.+..+..+...+. .-.|..+
T Consensus 150 ---------d~iT~~~F--~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 150 ---------DSITQALF--LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred ---------HHHhHHhc--cCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 88999999 4567799999999999999999876654432211 1112333
Q ss_pred eeccccc------------cccccCCCCCc--------------------------------------------------
Q 012721 165 NTLLAEK------------NFMNEHNPPSF-------------------------------------------------- 182 (457)
Q Consensus 165 ~~~~~~~------------~~~~~~~~~~~-------------------------------------------------- 182 (457)
+|..++. .+.........
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence 3333321 00000000000
Q ss_pred ----------------------------eeccCCcc------ccccceEEEeccCccc--cccc---eeeccCCCCCeeE
Q 012721 183 ----------------------------AHGYHLEW------TENMATKIANVGNSVH--ARCQ---KVYPHAHDFNINS 223 (457)
Q Consensus 183 ----------------------------~~~~~~~~------~~~~~i~~~~~~~~~~--~~~~---~~~~~~h~~~v~~ 223 (457)
.+.+++.- ..+..+..+.++.... .++. ..-..+|...|.+
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 00000000 0111223333332110 1111 1223689999999
Q ss_pred EEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeee-----------------------------cCC----CcccCCCCce
Q 012721 224 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-----------------------------MKP----SNMDDLTEVI 270 (457)
Q Consensus 224 ~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-----------------------------~~~----~~~~~~~~~i 270 (457)
++++.+...+++|..+.+++|+.. ..++++++. +.. .+.++|.+.|
T Consensus 379 l~vS~d~~~~~Sga~~SikiWn~~-t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGESIKIWNRD-TLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred EEeecCceeeeecCCCcEEEEEcc-CcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 999999988888899999999998 444444322 111 1246899999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeec-cccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
++++..||+ ..+++|+.|.+|++||..-..... ...+.+..+ ....-.-...|.++.+||||++||.+- |+
T Consensus 458 Wsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~------~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 458 WSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK------HTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred eeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeec------cceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 999999999 999999999999999986432100 000111110 001112246799999999999999885 69
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
+|++|-+++ -+..-.+.+|.-++ +++..|||++.++|||.|..|+||-++=| .+...+-+|..
T Consensus 531 TVkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdD 593 (888)
T KOG0306|consen 531 TVKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDD 593 (888)
T ss_pred eEEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccC
Confidence 999999986 77788888999876 79999999999999999999999999999 78899999999
Q ss_pred cceeeeeccCCcce
Q 012721 429 ENRKPILQAAPRAR 442 (457)
Q Consensus 429 ~v~~~~~~p~~~~~ 442 (457)
.|.+|.|-|.....
T Consensus 594 Svm~V~F~P~~~~F 607 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLF 607 (888)
T ss_pred ceeEEEEcccceeE
Confidence 99999999965443
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-29 Score=211.65 Aligned_cols=273 Identities=18% Similarity=0.260 Sum_probs=201.2
Q ss_pred ccccCCceEEEEECCCC---CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 28 ELQDVDIVSAIEFDKTG---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~---~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
..+|+++|.+++|-... ..|++++.|.++++|..+.++.. .+.+..-+||.
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------------~~~~~~~~GHk--- 193 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------------VKALKVCRGHK--- 193 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------------hhHHhHhcccc---
Confidence 44699999988886533 35999999999999999877642 11222334787
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
.+|-+|+. .++|..+++|+.|.+|++|+................ .+
T Consensus 194 ---------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r----------rk------------- 239 (423)
T KOG0313|consen 194 ---------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR----------RK------------- 239 (423)
T ss_pred ---------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhh----------hh-------------
Confidence 89999998 689999999999999999994432211111100000 00
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
.. -.........++..+ .+|..+|.++.|++ ...++++ .|.+|+.||+.+.+....+.
T Consensus 240 -----------~~-~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~------- 298 (423)
T KOG0313|consen 240 -----------KQ-KREKEGGTRTPLVTL-EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT------- 298 (423)
T ss_pred -----------hh-hhhhcccccCceEEe-cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-------
Confidence 00 000001122333334 89999999999997 5667777 99999999999544433321
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
....+++++.+|.. .+|++|+.|..|++||.+++. +......+.+|...|.++.|+|...+++
T Consensus 299 --~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~--------------gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 299 --TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGD--------------GSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred --cCcceeEeeccccc-ceeeecCCCCceeecCCCCCC--------------CceeEEeeecchhhhhheecCCCCceEE
Confidence 33678999999987 999999999999999999863 2233445788999999999999876655
Q ss_pred -EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 344 -SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 344 -s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+++ |+++++||+++...++..+.+|...+ +++.|+ ++.+|++|+.|.+|+|+.-.
T Consensus 362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKv---------------l~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV---------------LSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEecCCeEEEEEeccCCCcceeeccCCceE---------------EEEecc-CCceEEeccCcceEEEeccc
Confidence 666 49999999998666999999998765 789997 66789999999999998754
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-29 Score=224.89 Aligned_cols=240 Identities=18% Similarity=0.286 Sum_probs=202.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (457)
.+.|+++.|+++|.+||+|..+|.|.|||....+. +..+.+ |.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~---------------------------~~~~~~~h~--------- 260 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---------------------------TRTLRGSHA--------- 260 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---------------------------cccccCCcC---------
Confidence 68999999999999999999999999999987664 345666 77
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..|-+++| . +..+.+|+.|+.|..+|++..+....
T Consensus 261 ---~rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~~-------------------------------------- 295 (484)
T KOG0305|consen 261 ---SRVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVVS-------------------------------------- 295 (484)
T ss_pred ---ceeEEEec--c--CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence 88999999 3 56888999999999999987643211
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+.+|...|..++|++|+.++|+| .|+.+.|||.......+. +..|.+.
T Consensus 296 ----------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aA 345 (484)
T KOG0305|consen 296 ----------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAA 345 (484)
T ss_pred ----------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------Eecccee
Confidence 027899999999999999999999 999999999963333332 5789999
Q ss_pred eEEEEEecCCccEEEEEc--cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-e
Q 012721 270 ITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~--~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~ 346 (457)
|.+++|+|....+||+|+ .|+.|++||..+++.. ..... .+.|.+|.|++..+-|+++ +
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecC
Confidence 999999998878999986 7999999999998655 22222 3789999999998777765 2
Q ss_pred --cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 347 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 347 --~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
++.|.||+..+ .+.+..+.+|...+ ..++++|||..|++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 38999999986 78899999999876 79999999999999999999999998764
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-28 Score=227.49 Aligned_cols=251 Identities=16% Similarity=0.257 Sum_probs=200.3
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.++|+.++|+|++.++++|+.|..|++|+..+.+ ++-++.||.
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr---------------------------clftL~GHl------- 93 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR---------------------------CLFTLLGHL------- 93 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEecccce---------------------------ehhhhcccc-------
Confidence 3499999999999999999999999999999998765 567899999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+-|..+.| ++.-..++++|.|.+|+||+..++++..+.
T Consensus 94 -----DYVRt~~F--HheyPWIlSASDDQTIrIWNwqsr~~iavl----------------------------------- 131 (1202)
T KOG0292|consen 94 -----DYVRTVFF--HHEYPWILSASDDQTIRIWNWQSRKCIAVL----------------------------------- 131 (1202)
T ss_pred -----ceeEEeec--cCCCceEEEccCCCeEEEEeccCCceEEEE-----------------------------------
Confidence 66999999 577789999999999999999988766543
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce----e----------
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC----F---------- 253 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~----~---------- 253 (457)
.+|...|.|..|+|....++++ -|.+|++||+..-.+. -
T Consensus 132 --------------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~ 185 (1202)
T KOG0292|consen 132 --------------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ 185 (1202)
T ss_pred --------------------------ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc
Confidence 6899999999999999999999 9999999998621100 0
Q ss_pred ---eeee----cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721 254 ---NIVD----MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (457)
Q Consensus 254 ---~~~~----~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (457)
..+. +-...+++|...|.-++|+|.- .+|++|+.|..|++|.+... +.|+. .+..+|
T Consensus 186 ~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnet-------KaWEv--------DtcrgH 249 (1202)
T KOG0292|consen 186 GNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNET-------KAWEV--------DTCRGH 249 (1202)
T ss_pred cchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccc-------cceee--------hhhhcc
Confidence 0000 0012368999999999999998 99999999999999998765 33433 346789
Q ss_pred ccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721 327 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 327 ~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
...|+++-|+|...+|++.++ ++|++||+.. .+.+.+++.....- +.++-+|..+++++|- |
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRF---------------W~laahP~lNLfAAgH-D 312 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRF---------------WILAAHPELNLFAAGH-D 312 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeE---------------EEEEecCCcceeeeec-C
Confidence 999999999999999998764 9999999975 77788886544432 4677788777666544 3
Q ss_pred CcEEEEecC
Q 012721 406 NLLRIFSHG 414 (457)
Q Consensus 406 g~i~iw~~~ 414 (457)
+-+.+|.+.
T Consensus 313 sGm~VFkle 321 (1202)
T KOG0292|consen 313 SGMIVFKLE 321 (1202)
T ss_pred CceEEEEEc
Confidence 334455554
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=206.04 Aligned_cols=301 Identities=20% Similarity=0.239 Sum_probs=221.8
Q ss_pred cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (457)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (457)
...|+..+. + .+.+...|.+.|+|+.||.+|.|||||+.+|.|+||+..++...
T Consensus 88 AflW~~~~g--e-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~----------------------- 141 (399)
T KOG0296|consen 88 AFLWDISTG--E-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ----------------------- 141 (399)
T ss_pred EEEEEccCC--c-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------
Confidence 344665542 2 45566779999999999999999999999999999999988742
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
..+...- +.|.-+.| +|.+..|+.|+.||.+.+|.+.++...+++..+ ..+++
T Consensus 142 ----~~~~~e~------------~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct-------- 194 (399)
T KOG0296|consen 142 ----WKLDQEV------------EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCT-------- 194 (399)
T ss_pred ----EEeeccc------------CceEEEEe--cccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcc--------
Confidence 2222222 45778889 568889999999999999999986554444332 12222
Q ss_pred ccccccCCCCCceeccCCcc----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721 171 KNFMNEHNPPSFAHGYHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd 245 (457)
...++++|+. ..++.+++|+..+ .+++............++.++.++..++.| .++.+++-+
T Consensus 195 ----------~G~f~pdGKr~~tgy~dgti~~Wn~kt---g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 195 ----------CGEFIPDGKRILTGYDDGTIIVWNPKT---GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred ----------cccccCCCceEEEEecCceEEEEecCC---CceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 2334455542 3467999999864 344444433445567899999999999999 999999888
Q ss_pred cCCCcceeeeee-cCCCcccCCCCceEEEEEec---CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccc
Q 012721 246 LEISDQCFNIVD-MKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (457)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p---~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
.. .++.+.... ..+.-...+...+.|+.+.| .- .+.|+|+.||+|.|||+...++. .
T Consensus 262 ~~-sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~~~R----~------------- 322 (399)
T KOG0296|consen 262 NG-SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAASTLR----H------------- 322 (399)
T ss_pred cc-cceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccchhh----e-------------
Confidence 76 455554432 12222234455555555544 44 58899999999999999885432 1
Q ss_pred ceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE
Q 012721 322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (457)
Q Consensus 322 ~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 400 (457)
.-.|..+|..+.|-+ ..+|++++ +|.|+.||.++ ++++..+.+|...+ .+++++|+.++++
T Consensus 323 -~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~I---------------l~f~ls~~~~~vv 384 (399)
T KOG0296|consen 323 -ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTGHQMGI---------------LDFALSPQKRLVV 384 (399)
T ss_pred -eccCCCceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEecCchhe---------------eEEEEcCCCcEEE
Confidence 133567899999999 66777765 59999999997 99999999999876 7999999999999
Q ss_pred EEeCCCcEEEEecC
Q 012721 401 TGSYSNLLRIFSHG 414 (457)
Q Consensus 401 s~~~dg~i~iw~~~ 414 (457)
|+|.|++.+||++.
T Consensus 385 T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 385 TVSDDNTALVFEVP 398 (399)
T ss_pred EecCCCeEEEEecC
Confidence 99999999999875
No 63
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-28 Score=225.68 Aligned_cols=286 Identities=14% Similarity=0.164 Sum_probs=236.3
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
...+|...|.++++|.+...+++|+. +.|+||+.++.+ +++++...
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~k---------------------------ciRTi~~~------ 413 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLK---------------------------CIRTITCG------ 413 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcc---------------------------eeEEeccc------
Confidence 34569999999999999988888765 579999998776 33444433
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
-+.+..|. |.+.++++|...|.+.++|+........+
T Consensus 414 --------y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti--------------------------------- 450 (888)
T KOG0306|consen 414 --------YILASKFV--PGDRYIVLGTKNGELQVFDLASASLVETI--------------------------------- 450 (888)
T ss_pred --------cEEEEEec--CCCceEEEeccCCceEEEEeehhhhhhhh---------------------------------
Confidence 38888995 67889999999999999999876544321
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC----cceeeeeecCCC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPS 261 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~ 261 (457)
.+|.+.|++++.+||++.+++| .|.+|++||.... +...+.+.++..
T Consensus 451 ----------------------------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 451 ----------------------------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT 502 (888)
T ss_pred ----------------------------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence 6899999999999999999999 9999999998621 111122222222
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
..-...+.|.|++++||| ++|+++-.|.++++|-+.+-+.. - .+-||.-+|.+|..|||+++
T Consensus 503 rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFf-------l----------sLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFF-------L----------SLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred eEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeee-------e----------eecccccceeEEeccCCcCe
Confidence 233456889999999999 99999999999999999885422 1 14678899999999999999
Q ss_pred EEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (457)
Q Consensus 342 l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 420 (457)
+++|+ |..|++|-++. +.+-+.+-+|...+ +++.|-|+...+.+++.|+.|+-||-..- ..+
T Consensus 565 ivTgSADKnVKiWGLdF-GDCHKS~fAHdDSv---------------m~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~i 627 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDF-GDCHKSFFAHDDSV---------------MSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EEI 627 (888)
T ss_pred EEeccCCCceEEecccc-chhhhhhhcccCce---------------eEEEEcccceeEEEecCcceEEeechhhh-hhh
Confidence 99997 59999999986 89999999999875 69999999999999999999999998877 778
Q ss_pred eEEecCCCcceeeeeccCCcceeccccccccccc
Q 012721 421 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 421 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
+++.+|...|++++.+|+|.-..+ ++.+++.|
T Consensus 628 q~L~~H~~ev~cLav~~~G~~vvs--~shD~sIR 659 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGSFVVS--SSHDKSIR 659 (888)
T ss_pred eeeccchheeeeeEEcCCCCeEEe--ccCCceeE
Confidence 999999999999999999998888 77777766
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=6.6e-30 Score=218.26 Aligned_cols=271 Identities=20% Similarity=0.254 Sum_probs=216.2
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|.+.|..+.|-++...|++|+.|..|++|++...+. ..+.+|.|..
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~--------- 219 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL--------- 219 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC---------
Confidence 889999999999989999999999999999876653 2556677777
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
++|+.+.| .+++.++++++.|+.+++|++...+....
T Consensus 220 ---g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T-------------------------------------- 256 (459)
T KOG0288|consen 220 ---GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT-------------------------------------- 256 (459)
T ss_pred ---CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh--------------------------------------
Confidence 88999999 78899999999999999999988765433
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
+.+|.+.|+++.|......+++| .|.+|++||+. ...+.+.+ +. ...
T Consensus 257 -----------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l~--~S~ 304 (459)
T KOG0288|consen 257 -----------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------LP--GSQ 304 (459)
T ss_pred -----------------------hcccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------cc--ccc
Confidence 26899999999998766668899 99999999999 56666543 21 244
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
+..|+.. . ..+++|-.|++|++||.++.... ...+. .+.|+++..+++|..|.+++ |.
T Consensus 305 cnDI~~~--~-~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 305 CNDIVCS--I-SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred ccceEec--c-eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCCC
Confidence 5566655 3 67899999999999999987543 33333 35899999999999888776 59
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
++.+.|+++ ......+...... +-.+.+.+.|||++.|+++|+.||.|+||++.++ +....+....+
T Consensus 364 tl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s 430 (459)
T KOG0288|consen 364 TLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTS 430 (459)
T ss_pred ceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCC
Confidence 999999986 5555566543322 1112378999999999999999999999999999 66666665555
Q ss_pred c--ceeeeeccCCcceec
Q 012721 429 E--NRKPILQAAPRARRS 444 (457)
Q Consensus 429 ~--v~~~~~~p~~~~~~~ 444 (457)
+ |++++|+|.|...++
T Consensus 431 ~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 431 NAAITSLSWNPSGSGLLS 448 (459)
T ss_pred CcceEEEEEcCCCchhhc
Confidence 5 999999999876655
No 65
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=7.9e-29 Score=203.38 Aligned_cols=250 Identities=14% Similarity=0.191 Sum_probs=202.8
Q ss_pred CCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
-....|.++|..+.|.+|++.|++++.|.+|+.||.++++. +..+++|.
T Consensus 84 ~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~---------------------------~rk~k~h~---- 132 (338)
T KOG0265|consen 84 WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR---------------------------IRKHKGHT---- 132 (338)
T ss_pred eeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee---------------------------eehhcccc----
Confidence 33446999999999999999999999999999999998874 46788888
Q ss_pred ccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
.-|+.+.- ..- -.++.+++.|+++++||++........
T Consensus 133 --------~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------------------------------- 171 (338)
T KOG0265|consen 133 --------SFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------------------------------- 171 (338)
T ss_pred --------ceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhcc-------------------------------
Confidence 66777763 333 446667899999999999876544331
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
...-.++++.|..++..+.+| -|+.|++||++ ......+ +
T Consensus 172 -------------------------------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~~~-------l 212 (338)
T KOG0265|consen 172 -------------------------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGLYT-------L 212 (338)
T ss_pred -------------------------------ccceeEEEEEecccccceeeccccCceeeeccc-cCcceEE-------e
Confidence 233468899999999999999 99999999998 5555544 7
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
.+|.+.|+.+..+|+| .++.+-+.|.++++||++--......+.++.+|... .......++|+|++.++.
T Consensus 213 sGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---------feknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 213 SGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---------FEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred ecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh---------hhhhcceeeccCCCCccc
Confidence 8999999999999999 999999999999999998754333334555552111 123456789999999999
Q ss_pred EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 344 s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
+|+ |..+++||... ...+..+.+|.+.+ .+++|+|...+|.+++.|.+|++=+
T Consensus 283 ags~dr~vyvwd~~~-r~~lyklpGh~gsv---------------n~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTS-RRILYKLPGHYGSV---------------NEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccceEEEeeccc-ccEEEEcCCcceeE---------------EEeeecCCCcEEEEeccCceeEeec
Confidence 986 59999999974 78899999999876 5899999999999999999998744
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=212.81 Aligned_cols=284 Identities=16% Similarity=0.177 Sum_probs=206.5
Q ss_pred CCccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 26 DEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
+..-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...+ +..+|++|.
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------~~~~f~AH~--- 109 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------------------CIRTFKAHE--- 109 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh---------------------------hhheeeccc---
Confidence 3446799999999999977 789999999999999998765 457899999
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
+.|..|++ .. ..+++++.|++|+.|.++.. ....+. ....+..+...
T Consensus 110 ---------G~V~Gi~v--~~--~~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~----------------- 156 (433)
T KOG0268|consen 110 ---------GLVRGICV--TQ--TSFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHH----------------- 156 (433)
T ss_pred ---------CceeeEEe--cc--cceEEecCCcceeeeeccCC-cceeee--ccccccccccc-----------------
Confidence 89999999 33 57999999999999998763 222211 11111111110
Q ss_pred ccCCcccccc-ceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 185 GYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 185 ~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
-....|+.++ .|.+||.+.. .+++.+ .--...|.++.|+|.. ..|++| .|+.|.+||++ ....++.+.+
T Consensus 157 ~~~~~FaTcGe~i~IWD~~R~---~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-~~~Pl~KVi~--- 228 (433)
T KOG0268|consen 157 RKNSVFATCGEQIDIWDEQRD---NPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLR-QASPLKKVIL--- 228 (433)
T ss_pred cccccccccCceeeecccccC---Ccccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecc-cCCccceeee---
Confidence 0111233344 8999999754 334433 3445678999999954 556667 99999999999 4544433211
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
...-..|+|+|.+ ..+++|++|..+..||++.-.. .. ....+|.+.|.++.|||.|+-
T Consensus 229 -----~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~------p~----------~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 229 -----TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR------PL----------NVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred -----eccccceecCccc-cceeeccccccceehhhhhhcc------cc----------hhhcccceeEEEeccCCCcch
Confidence 1334678999977 8899999999999999997531 11 124568899999999999999
Q ss_pred EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
+++|+. .+|+||..+. +..-..+ .+..+.-|+++.||-|.+||++||+|+.|++|.....+
T Consensus 287 fvsgsyDksIRIf~~~~-~~SRdiY--------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNH-GHSRDIY--------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hccccccceEEEeecCC-Ccchhhh--------------hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 999985 9999999874 3322222 22222234799999999999999999999999987653
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-27 Score=215.31 Aligned_cols=240 Identities=26% Similarity=0.404 Sum_probs=197.8
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...+.++.|+|++++|++++.+|.|++|++.+++. +..+..|.
T Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---------------------------~~~~~~~~------- 93 (289)
T cd00200 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---------------------------VRTLTGHT------- 93 (289)
T ss_pred ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc---------------------------eEEEeccC-------
Confidence 34788899999999999999999999999999987542 34566776
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.++.| ++++.++++++.|+.|.+|++.+++.....
T Consensus 94 -----~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------------------------- 131 (289)
T cd00200 94 -----SYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTTL----------------------------------- 131 (289)
T ss_pred -----CcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEEe-----------------------------------
Confidence 78999999 566778888888999999999865443221
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..|...+.+++|+|++.+++++ .|+.|++||++ ..+.... +..|.
T Consensus 132 --------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~-------~~~~~ 177 (289)
T cd00200 132 --------------------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVAT-------LTGHT 177 (289)
T ss_pred --------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc-cccccee-------EecCc
Confidence 4577789999999999999998 69999999998 4444443 45677
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
..+.+++|+|++ +.+++++.|+.|++||++.++.. ..+ ..|...+.++.|+|++.++++++
T Consensus 178 ~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 178 GEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCL----GTL-------------RGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred cccceEEECCCc-CEEEEecCCCcEEEEECCCCcee----cch-------------hhcCCceEEEEEcCCCcEEEEEcC
Confidence 899999999998 88999999999999999876433 222 23456899999999999999888
Q ss_pred cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
++.|++||+.. ++....+..|...+ .+++|+|++.+|++++.|+.|++|+
T Consensus 240 ~~~i~i~~~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRT-GECVQTLSGHTNSV---------------TSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCC-ceeEEEccccCCcE---------------EEEEECCCCCEEEEecCCCeEEecC
Confidence 69999999975 67777777776544 6899999999999999999999996
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.1e-27 Score=243.12 Aligned_cols=258 Identities=13% Similarity=0.169 Sum_probs=192.7
Q ss_pred ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.+...|.+++|++ ++.+||+++.||+|+|||+.+++ .+..+.+|.
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~------- 575 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHE------- 575 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe---------------------------EEEEecCCC-------
Confidence 4567899999987 47899999999999999998665 456778898
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|++++|.| .++.+|++|+.|++|++||+.++.....+
T Consensus 576 -----~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~----------------------------------- 614 (793)
T PLN00181 576 -----KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI----------------------------------- 614 (793)
T ss_pred -----CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE-----------------------------------
Confidence 8899999952 47789999999999999999877543321
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-CCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
. +...+.++.|+ +++.+|++| .|+.|++||++........ +.+|
T Consensus 615 --------------------------~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~~h 660 (793)
T PLN00181 615 --------------------------K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MIGH 660 (793)
T ss_pred --------------------------e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ecCC
Confidence 1 22468899994 579999999 9999999999843333332 5689
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...|.++.|. ++ .+|++++.|++|++||++...... .......+.+|...+..++|+|++.+|++|+
T Consensus 661 ~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-----------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 661 SKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-----------NETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-----------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 9999999997 55 789999999999999997642100 0011223567888899999999999999997
Q ss_pred c-CcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
. +.|++|+... ..++..+... ...+... ...+.-..|.+++|+|++..|++|+.||.|+||++
T Consensus 728 ~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~---~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 728 ETNEVFVYHKAF-PMPVLSYKFKTIDPVSGL---EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCEEEEEECCC-CCceEEEecccCCccccc---ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5 9999999864 3333332211 1110000 00011112479999999999999999999999996
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-26 Score=182.66 Aligned_cols=298 Identities=18% Similarity=0.200 Sum_probs=217.8
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
+..+..|.+++|+|.|.+.|+|++..+.+|......... +.+... ...|.......-+.|
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~-----------r~~hea-~~~pp~v~~kr~khh-------- 88 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL-----------RHAHEA-AKQPPSVLCKRNKHH-------- 88 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc-----------cccccc-ccCCCeEEeeecccc--------
Confidence 345789999999999999999999999998765433211 000000 000111111222334
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.+.|.|.+| +++|+++++|+.|++|++..++.......-
T Consensus 89 ----kgsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g----------------------------------- 127 (350)
T KOG0641|consen 89 ----KGSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATG----------------------------------- 127 (350)
T ss_pred ----CccEEEEEe--cCccCeEEecCCCceEEEEecccccccccC-----------------------------------
Confidence 499999999 899999999999999999877654332210
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC----CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
.-..+ .-|.+.|..++|-. .+.+|+++ .|..|++-|.. .++.++.
T Consensus 128 --------------------~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a------- 178 (350)
T KOG0641|consen 128 --------------------HDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHA------- 178 (350)
T ss_pred --------------------cceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCccee-------
Confidence 00001 56889999999943 35677775 78888888887 5666644
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
+.+|.+.|.++ ++=++ .++++|+.|.+|++||++-.... .++........ -..+.|.+++..|.|++|
T Consensus 179 ~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v----~~l~~~~~~~g------lessavaav~vdpsgrll 246 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCV----NTLDNDFHDGG------LESSAVAAVAVDPSGRLL 246 (350)
T ss_pred ecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeecccee----eeccCcccCCC------cccceeEEEEECCCccee
Confidence 68999998877 34455 89999999999999999986544 22222000000 013679999999999999
Q ss_pred EEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---Cc
Q 012721 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SA 418 (457)
Q Consensus 343 ~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~---~~ 418 (457)
++|- |....+||++ .+++++.+..|...+ .++.|+|...|+++++.|..|++-|++-. +.
T Consensus 247 ~sg~~dssc~lydir-g~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIR-GGRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred eeccCCCceEEEEee-CCceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEEeecccchhhcC
Confidence 9996 4889999998 489999999988765 79999999999999999999999999753 24
Q ss_pred eeeEEecCCCcceeeeeccCCcceec
Q 012721 419 GGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
...+...|+..+....|||+--+..+
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred ceEEEEeccCceEEEEecCccceeee
Confidence 56677889999999999998766655
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.9e-29 Score=219.77 Aligned_cols=246 Identities=20% Similarity=0.310 Sum_probs=197.1
Q ss_pred CCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
.....|..+|.+++|+++|..+.+++.|+.|++||+++|+.. ..|. .
T Consensus 252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~---------------------------~~f~--~---- 298 (503)
T KOG0282|consen 252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL---------------------------SRFH--L---- 298 (503)
T ss_pred hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE---------------------------EEEe--c----
Confidence 345569999999999999999999999999999999999852 2222 2
Q ss_pred ccccccccCcEEEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 106 YLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
...++|+.|. |++ +.|++|+.|+.|+.||+++++++..+
T Consensus 299 -------~~~~~cvkf~--pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY------------------------------- 338 (503)
T KOG0282|consen 299 -------DKVPTCVKFH--PDNQNIFLVGGSDKKIRQWDIRSGKVVQEY------------------------------- 338 (503)
T ss_pred -------CCCceeeecC--CCCCcEEEEecCCCcEEEEeccchHHHHHH-------------------------------
Confidence 2468999995 555 78999999999999999998754321
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..|-+.|..+.|-+++..++++ +|++++||+.+. ...++.+ .
T Consensus 339 ------------------------------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i------~ 381 (503)
T KOG0282|consen 339 ------------------------------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNI------A 381 (503)
T ss_pred ------------------------------HhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhh------c
Confidence 4688899999999999999999 999999999983 3333321 2
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc--cceEEEEEccCCCe
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII--ASISDIKFANDGQH 341 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~ 341 (457)
..+.....++..+|++ .+++.-+.|+.|.+|.+...- ....+..|.+|. +.-..+.|||||++
T Consensus 382 ~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~--------------r~nkkK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF--------------RLNKKKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred chhhccCcceecCCCC-CeehhhccCceEEEEeccccc--------------ccCHhhhhcceeccCceeeEEEcCCCCe
Confidence 2233456789999999 999999999999999865421 111223345554 45678899999999
Q ss_pred EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEe
Q 012721 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFS 412 (457)
Q Consensus 342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~ 412 (457)
|++|+. |.+.+||.++ .+++..++.|+..+ +.+.|+|. ...+|+++.||.|++|+
T Consensus 447 l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~c---------------i~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 447 LCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPC---------------IGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeecCCccEEEeechh-hhhhhccccCCcce---------------EEEEecCCCcceeEecccCceeEecC
Confidence 999975 9999999987 88999999997765 68999996 46899999999999996
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.8e-28 Score=207.89 Aligned_cols=310 Identities=15% Similarity=0.223 Sum_probs=231.6
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.-+|.||+++|++++.++++.+|+|.=|++.+++.. ..-+++. . .++.|-.++..-+
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~------~~i~~~~-e-------------v~k~~~~~~k~~r- 198 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD------RYIIERD-E-------------VLKSHGNPLKESR- 198 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCccc------ccccccc-h-------------hhhhccCCCCccc-
Confidence 48999999999999999999999999999999988752 0001100 0 0111111111111
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
-.|...|.+++. ++||.+|++|+.|..|.||+.++.+....
T Consensus 199 ~~h~keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~------------------------------------- 239 (479)
T KOG0299|consen 199 KGHVKEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV------------------------------------- 239 (479)
T ss_pred ccccceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc-------------------------------------
Confidence 122377999999 89999999999999999999998754432
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
+ .+|.+.|.+++|-.....++++ .|.+|++|+++ ....+.+ +-+|+.
T Consensus 240 -----------------------~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~vet-------lyGHqd 287 (479)
T KOG0299|consen 240 -----------------------F-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVET-------LYGHQD 287 (479)
T ss_pred -----------------------c-cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHHH-------HhCCcc
Confidence 2 7899999999998777777777 99999999998 4444433 789999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
.|..|....-+ +.+.+|+.|+++++|++..... .+ +.+|.+.+.|++|-.+ ..+++|+|
T Consensus 288 ~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----li-------------frg~~~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 288 GVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LI-------------FRGGEGSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred ceeeechhccc-ceEEeccccceeEEEeccccce-----ee-------------eeCCCCCeeeEEEecc-cceeeccCC
Confidence 99999988887 7888888999999999955321 12 3445678999999765 46778876
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe--c
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--A 425 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~ 425 (457)
|.|.+|++.. .+++.+.....+..+....++.+ +.|++++..|...++|+|+.+|.|++|.+..+...+..+. .
T Consensus 348 G~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 348 GSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred ceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence 9999999976 88888877554444332222222 5678999999999999999999999999998843333222 2
Q ss_pred CCCcceeeeeccCCcceecccccccccccc
Q 012721 426 GKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (457)
Q Consensus 426 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 455 (457)
-.+-|++++|++++.....|++=-.|-=||
T Consensus 424 ~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cccEEEEEEEccCCCEEEEeccccccccee
Confidence 567899999999999888877766554443
No 72
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=8.4e-27 Score=220.15 Aligned_cols=240 Identities=17% Similarity=0.239 Sum_probs=170.2
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (457)
.+..+.+|. +.|.+++| +|+ +.+|++|+.|++|++||+.++..... .
T Consensus 66 ~v~~L~gH~------------~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~----------------- 113 (568)
T PTZ00420 66 PVIKLKGHT------------SSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVK-E----------------- 113 (568)
T ss_pred eEEEEcCCC------------CCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCcccc-c-----------------
Confidence 456788998 88999999 554 67999999999999999976421100 0
Q ss_pred cccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCC
Q 012721 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEIS 249 (457)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~ 249 (457)
...++..+ .+|...|.+++|+|++..+ +++ .|+.|++||++ .
T Consensus 114 ----------------------------------i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-t 157 (568)
T PTZ00420 114 ----------------------------------IKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-N 157 (568)
T ss_pred ----------------------------------cccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-C
Confidence 00111112 6899999999999988765 677 99999999998 4
Q ss_pred cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
++.... +. |...|.+++|+|+| .+|++++.|+.|+|||+++++.. ..+ .+|.+.
T Consensus 158 g~~~~~-------i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl-------------~gH~g~ 211 (568)
T PTZ00420 158 EKRAFQ-------IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSF-------------HIHDGG 211 (568)
T ss_pred CcEEEE-------Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEE-------------ecccCC
Confidence 443322 22 45679999999999 99999999999999999987543 222 234443
Q ss_pred e-----EEEEEccCCCeEEEEe-c----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-cCCCcE
Q 012721 330 I-----SDIKFANDGQHLLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLH 398 (457)
Q Consensus 330 v-----~~~~~s~~g~~l~s~~-~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~ 398 (457)
+ +...|++++.+|++++ + +.|+|||++...+++..+..+.... . ....| .+++.+
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~-~-------------L~p~~D~~tg~l 277 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA-P-------------LIPHYDESTGLI 277 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc-c-------------eEEeeeCCCCCE
Confidence 3 3345668888888754 3 3799999985567776654443321 0 12233 445889
Q ss_pred EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721 399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
+++|+.|+.|++|++..+.........+..|...++|.|..-
T Consensus 278 ~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 999999999999999877322222223567889999998743
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-27 Score=191.29 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=193.3
Q ss_pred eeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (457)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (457)
.++||+ .+++.|.| +.+|.+|.+++.|.+..+|-..+|+.+-.
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt----------------------- 47 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT----------------------- 47 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence 467888 89999999 79999999999999999999877765433
Q ss_pred cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceee
Q 012721 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (457)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (457)
+ .+|.+.|+|++.+.+.+.+++| .|.++++||++ .++.+.
T Consensus 48 -------------------------------------y-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la 88 (327)
T KOG0643|consen 48 -------------------------------------Y-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLA 88 (327)
T ss_pred -------------------------------------e-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEE
Confidence 2 6999999999999999999999 99999999999 677776
Q ss_pred eeecCCCcccCCCCceEEEEEecCCccEEEEEcc-----CCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
.++ -..+|..+.|+++| ++++.... .+.|.++|++...... ....+...+..+.+.
T Consensus 89 ~~k--------~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~----------~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 89 TWK--------TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI----------DSEEPYLKIPTPDSK 149 (327)
T ss_pred Eee--------cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh----------cccCceEEecCCccc
Confidence 653 33789999999999 77776653 4679999998643110 011111123344578
Q ss_pred eEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721 330 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (457)
Q Consensus 330 v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 408 (457)
++.+.|+|.+++|++|.+ |.|..||++++.+.+.....|...+ .++.+++|..++++++.|.+-
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccc
Confidence 999999999999999975 9999999997556677777788765 689999999999999999999
Q ss_pred EEEecCCCC------------------------------------------------------ceeeEEecCCCcceeee
Q 012721 409 RIFSHGVGS------------------------------------------------------AGGITVEAGKNENRKPI 434 (457)
Q Consensus 409 ~iw~~~~~~------------------------------------------------------~~~~~~~~~~~~v~~~~ 434 (457)
++||+.+-+ +.....++|.+|+++|+
T Consensus 215 kl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred eeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 999987641 11223678999999999
Q ss_pred eccCCcceecc
Q 012721 435 LQAAPRARRSS 445 (457)
Q Consensus 435 ~~p~~~~~~~~ 445 (457)
|||+|....+|
T Consensus 295 fhPdGksYsSG 305 (327)
T KOG0643|consen 295 FHPDGKSYSSG 305 (327)
T ss_pred ECCCCcccccC
Confidence 99999998883
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.2e-27 Score=226.32 Aligned_cols=305 Identities=12% Similarity=0.174 Sum_probs=220.4
Q ss_pred cCCceEEEEECCCCCEEEEEe--CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
+...|.++..+|||..+|||+ .||.++||+.+.--.. ... ... .-.+.+.+...|.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~------~~~---~~~------~l~k~l~~m~~h~------- 69 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE------KEE---KNE------NLPKHLCTMDDHD------- 69 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccch------hhh---hhc------ccchhheeecccc-------
Confidence 356799999999999999999 8999999997643210 000 000 0122445566676
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|+|+.| ++||.+||+|+.|+.|.+|+............
T Consensus 70 -----~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs--------------------------------- 109 (942)
T KOG0973|consen 70 -----GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFGS--------------------------------- 109 (942)
T ss_pred -----CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccccc---------------------------------
Confidence 89999999 89999999999999999999774110000000
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.++ .......++...+ .+|...|..++|+|++.+|+++ .|++|.||+.. ..+.+++ +.+|.
T Consensus 110 ---~g~------~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~-tF~~~~v-------l~~H~ 171 (942)
T KOG0973|consen 110 ---TGG------AKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK-TFELLKV-------LRGHQ 171 (942)
T ss_pred ---ccc------ccccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccc-cceeeee-------eeccc
Confidence 000 0001122444445 7899999999999999999999 99999999998 4566655 78999
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
..|-.+.|.|-| ++||+-+.|++|++|++..-.........|+. ..-...+..+.|||||+||++..
T Consensus 172 s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~-----------~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 172 SLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEE-----------SPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred ccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhh-----------CCCcceeeecccCCCcCeecchhh
Confidence 999999999999 99999999999999996653322111111211 11134688999999999999853
Q ss_pred ---c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-----C------------cEEEEEeCC
Q 012721 347 ---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----G------------LHFATGSYS 405 (457)
Q Consensus 347 ---~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~------------~~l~s~~~d 405 (457)
. .++.|.+-.+ -+.-..+-+|..++ ..+.|+|. . ..+|+|+.|
T Consensus 240 ~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred ccCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 1 5777777653 45556778888865 56778761 1 167899999
Q ss_pred CcEEEEecCCCCceeeEEecCCCcceeeeeccCCccee
Q 012721 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (457)
Q Consensus 406 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 443 (457)
++|.||.....+......+-....|..++|+|||....
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEE
Confidence 99999999877555555566688999999999986554
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=199.32 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=223.1
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
....+.++...|..+.++||+.|..+.++|....+ .+.+|+||.
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------~l~~~~Gh~--------- 261 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------ILATLKGHT--------- 261 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhh---------------------------hhhhccCcc---------
Confidence 35678899999887899999999999999988766 457899999
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..|+.+.| +++...+++++.|..|++|..........
T Consensus 262 ---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~-------------------------------------- 298 (506)
T KOG0289|consen 262 ---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTS-------------------------------------- 298 (506)
T ss_pred ---eEEEEEEe--ccchhheeecCCcceEEeeccccccCccc--------------------------------------
Confidence 88999999 57878899999999999999866432211
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
...|..+|+.+..+|.|+||+++ .|++..+.|++ .+..+.... -+...-.
T Consensus 299 -----------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-~g~~lt~vs-----~~~s~v~ 349 (506)
T KOG0289|consen 299 -----------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-SGSQLTVVS-----DETSDVE 349 (506)
T ss_pred -----------------------cccccccceeeeeccCCcEEEEecCCceEEEEEcc-CCcEEEEEe-----eccccce
Confidence 15799999999999999999999 99999999999 555554321 1123355
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~ 348 (457)
+++.+|+||| .+|.+|..||.|++||+.+.... ..|.+|.++|..++|+.+|-|||++.| +
T Consensus 350 ~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~-----------------a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 350 YTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV-----------------AKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred eEEeeEcCCc-eEEeccCCCceEEEEEcCCcccc-----------------ccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 8999999999 99999999999999999886321 235678999999999999999999876 8
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC-CceeeEEecCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGK 427 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~ 427 (457)
.|++||++. .+.+.++...+.. ++.+++|.+.|.+|+.++.|=.|++++-.+. -.....+..|.
T Consensus 412 ~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 412 SVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred eEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc
Confidence 899999986 5666666654431 2258999999999999988877777764432 24566777888
Q ss_pred CcceeeeeccCCcceeccccccccccc
Q 012721 428 NENRKPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 428 ~~v~~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
+..+.|.|.....-..+ ++.+|..|
T Consensus 477 g~st~v~Fg~~aq~l~s--~smd~~l~ 501 (506)
T KOG0289|consen 477 GLSTGVRFGEHAQYLAS--TSMDAILR 501 (506)
T ss_pred cccceeeecccceEEee--ccchhheE
Confidence 99999999876555444 55555544
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-27 Score=203.92 Aligned_cols=241 Identities=19% Similarity=0.285 Sum_probs=194.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.+.|++++|..||++||.|+..|.|+|||..+.. .+..+.+|+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---------------------------iLR~~~ah~---------- 110 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---------------------------ILRQLYAHQ---------- 110 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHH---------------------------HHHHHhhcc----------
Confidence 5689999999999999999999999999955422 456788999
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
.+|..+.|+| .++..|++|+.|+.+++||+.+......
T Consensus 111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~--------------------------------------- 148 (487)
T KOG0310|consen 111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAE--------------------------------------- 148 (487)
T ss_pred --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEE---------------------------------------
Confidence 8999999974 5677888999999999999988763111
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
+.+|++.|.|.+|+|. +..+++| +||.|++||.+.....+.. -.|..+
T Consensus 149 ----------------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--------lnhg~p 198 (487)
T KOG0310|consen 149 ----------------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--------LNHGCP 198 (487)
T ss_pred ----------------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------ecCCCc
Confidence 2789999999999995 5578888 9999999999955333322 348899
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
|..+.+-|.| .+|++++ ...|++||+.+|... ... +..|...|+|+.+..++..|++++ |+
T Consensus 199 Ve~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~ql------l~~----------~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 199 VESVLALPSG-SLIASAG-GNSVKVWDLTTGGQL------LTS----------MFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eeeEEEcCCC-CEEEEcC-CCeEEEEEecCCcee------hhh----------hhcccceEEEEEeecCCceEeeccccc
Confidence 9999999998 8888876 457999999966422 111 123678999999999999999887 69
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.|++||+.. -+.+..+...... .+++.+||++.++.|..||.+.+=+....
T Consensus 261 ~VKVfd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 261 HVKVFDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceEEEEccc-eEEEEeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence 999999753 7777777755543 69999999999999999999877755444
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.4e-27 Score=205.45 Aligned_cols=266 Identities=16% Similarity=0.253 Sum_probs=195.5
Q ss_pred ccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.+.|.+.|..+.+-|.. .++|+++..+.|.|||.......+. ...+..+-..|.||.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------------~~~~~~Pdl~L~gH~----- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------------ASGECRPDLRLKGHE----- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----------------ccccCCCceEEEeec-----
Confidence 35699999999999965 6778888999999999876543200 000233445788898
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
+.-.+++|.+. ....+++++.|++|.+||+........
T Consensus 178 -------~eg~glsWn~~-~~g~Lls~~~d~~i~lwdi~~~~~~~~---------------------------------- 215 (422)
T KOG0264|consen 178 -------KEGYGLSWNRQ-QEGTLLSGSDDHTICLWDINAESKEDK---------------------------------- 215 (422)
T ss_pred -------ccccccccccc-cceeEeeccCCCcEEEEeccccccCCc----------------------------------
Confidence 44677999643 344899999999999999986532100
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNM 263 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~ 263 (457)
...+...+ .+|...|..++|++- ..+|+++ +|+.+.|||++.. .+.. ...
T Consensus 216 -------------------~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~-------~~~ 268 (422)
T KOG0264|consen 216 -------------------VVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS-------HSV 268 (422)
T ss_pred -------------------cccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-------ccc
Confidence 00112222 799999999999984 4556666 9999999999941 1111 236
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-E
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L 342 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l 342 (457)
.+|.+.+.|++|+|.+..+||+||.|++|.+||+|+.+.. ...+.+|...|.+|.|+|...- |
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~----------------lh~~e~H~dev~~V~WSPh~etvL 332 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP----------------LHTFEGHEDEVFQVEWSPHNETVL 332 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC----------------ceeccCCCcceEEEEeCCCCCcee
Confidence 7899999999999988789999999999999999986421 1235678899999999997654 5
Q ss_pred EE-EecCcEEEEeccCCCC-------------ceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCc
Q 012721 343 LS-RDYMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNL 407 (457)
Q Consensus 343 ~s-~~~~~i~~wd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~ 407 (457)
|+ |.|+.+.+||+..-++ ++..-.||...+ ..+.|+|... .|+++++|+.
T Consensus 333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~ 397 (422)
T KOG0264|consen 333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNI 397 (422)
T ss_pred EecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCce
Confidence 54 4569999999964222 234555666554 6899999865 5678999999
Q ss_pred EEEEecCC
Q 012721 408 LRIFSHGV 415 (457)
Q Consensus 408 i~iw~~~~ 415 (457)
+.||++..
T Consensus 398 LqIW~~s~ 405 (422)
T KOG0264|consen 398 LQIWQMAE 405 (422)
T ss_pred EEEeeccc
Confidence 99999873
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=215.78 Aligned_cols=279 Identities=20% Similarity=0.319 Sum_probs=220.5
Q ss_pred cccCCceE---EEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 29 LQDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 29 ~~h~~~V~---~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
.+|...|. ++..+. .++||+||++||.|++|+....... |+..++..++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~---------------------~s~~~~asme~Hs--- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE---------------------PSTPYIASMEHHS--- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC---------------------cccchhhhhhhhH---
Confidence 45666777 566654 5678999999999999998755421 2334567788888
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
+.|+.+..+ .+++.|+++|.|-+|++|+...+..
T Consensus 74 ---------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~----------------------------------- 107 (735)
T KOG0308|consen 74 ---------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT----------------------------------- 107 (735)
T ss_pred ---------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc-----------------------------------
Confidence 889999884 6788999999999999999876531
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEe-CCCCCEEEEe-CCCeEEEEEcCCCcc-eeeeeecCC-
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKP- 260 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~- 260 (457)
-|+.++ ..|.+.|.|+++ .++...+|+| -|+.|.+||++.... ....+....
T Consensus 108 -----------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 108 -----------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred -----------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 122222 689999999999 7888899998 999999999994321 111111111
Q ss_pred Cccc-CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721 261 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (457)
Q Consensus 261 ~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 339 (457)
..+. ++...|++++.++.| ..|++|+..+.|++||.++++ ++++. .+|...|..+..++||
T Consensus 164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~------kimkL-----------rGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK------KIMKL-----------RGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc------ceeee-----------eccccceEEEEEcCCC
Confidence 1233 888999999999999 999999999999999999976 44444 6899999999999999
Q ss_pred CeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 340 ~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
..+++++ ||+|++||+.. .+++.++..|...+ +++..+|+-..+++|+.||.|+.=|+.+. .
T Consensus 226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~ 288 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNP-A 288 (735)
T ss_pred CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCc-h
Confidence 9999875 69999999985 88999999999875 68888999999999999999999999996 3
Q ss_pred eeeEEecCCCcceeeeec
Q 012721 419 GGITVEAGKNENRKPILQ 436 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~ 436 (457)
....+....+||..+..+
T Consensus 289 ~~tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 289 KSTLICKEDAPVLKLHLH 306 (735)
T ss_pred hheEeecCCCchhhhhhc
Confidence 445555566777766665
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3e-28 Score=194.97 Aligned_cols=245 Identities=15% Similarity=0.233 Sum_probs=199.0
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
+..+|.++|++.+.+.+-..-|+++.|-+-+|||.-++..
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde---------------------------------------- 93 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE---------------------------------------- 93 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh----------------------------------------
Confidence 3456999999999999988999999999999999888764
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
+.+++|+.-|.+++| +.|.++|++|+.++.+++||++..+..
T Consensus 94 lhsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~Ap------------------------------------ 135 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAP------------------------------------ 135 (334)
T ss_pred hhhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCC------------------------------------
Confidence 234455577999999 789999999999999999998764321
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
...+ .+|.+.|..+.|....+.|+++ +|++|++||.+ .+..++.+.
T Consensus 136 -----------------------p~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~-------- 182 (334)
T KOG0278|consen 136 -----------------------PKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLE-------- 182 (334)
T ss_pred -----------------------chhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEe--------
Confidence 1112 6899999999998888888887 99999999999 566666543
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
....|+++.++++| .+|.+ ...+.|.+||..+-.++ +.++. ...|.+..++|+...+++|
T Consensus 183 ~~s~VtSlEvs~dG-~ilTi-a~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDG-RILTI-AYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFVAG 242 (334)
T ss_pred cCCCCcceeeccCC-CEEEE-ecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEEec
Confidence 23678999999998 66655 45678999999886543 33333 3568999999999888888
Q ss_pred ec-CcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 346 DY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
+. ..++.||..+ +..+..+ ++|.+++ .++.|+|||...++|++||+|+||.+..++.
T Consensus 243 ged~~~~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 243 GEDFKVYKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CcceEEEEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 65 9999999987 7777665 7777765 7999999999999999999999999987743
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.7e-26 Score=213.66 Aligned_cols=220 Identities=14% Similarity=0.146 Sum_probs=164.3
Q ss_pred CccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
....|.+.|++++|+| ++++||+|+.|++|+||++.+.... ......+..+.+|.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~---- 125 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT---- 125 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC----
Confidence 3456999999999999 8899999999999999999765321 00112456788898
Q ss_pred ccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..|.+++|+ |+ +++|++++.|++|++||+.+++....+
T Consensus 126 --------~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l------------------------------- 164 (493)
T PTZ00421 126 --------KKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKAVEVI------------------------------- 164 (493)
T ss_pred --------CcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeEEEEE-------------------------------
Confidence 889999994 55 468999999999999999887543221
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
.+|...|.+++|+|++.+|+++ .|+.|++||++ .++.+.. +
T Consensus 165 ------------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-sg~~v~t-------l 206 (493)
T PTZ00421 165 ------------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-DGTIVSS-------V 206 (493)
T ss_pred ------------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECC-CCcEEEE-------E
Confidence 5788899999999999999999 99999999999 4544433 4
Q ss_pred cCCCCc-eEEEEEecCCccEEEEEc----cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721 264 DDLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 264 ~~~~~~-i~~v~~~p~~~~~l~~~~----~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 338 (457)
.+|... ...+.|.+++ ..+++++ .|+.|++||+++.... ...... .+...+....|+++
T Consensus 207 ~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~------------d~~~~~~~~~~d~d 270 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDL------------DQSSALFIPFFDED 270 (493)
T ss_pred ecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEecc------------CCCCceEEEEEcCC
Confidence 566553 4567788887 5665543 5799999999875321 111111 11235666789999
Q ss_pred CCeEEEEe--cCcEEEEeccCCCCceeEee
Q 012721 339 GQHLLSRD--YMNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 339 g~~l~s~~--~~~i~~wd~~~~~~~~~~~~ 366 (457)
+.+|++++ |+.|++||+.. ++++....
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~-~~~~~~~~ 299 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMN-ERLTFCSS 299 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeC-CceEEEee
Confidence 99988764 69999999985 66655543
No 81
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-27 Score=210.36 Aligned_cols=236 Identities=16% Similarity=0.253 Sum_probs=191.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.-+|++..|-+-.+++++|+.|..|+||+..+.++ +.+|.+|.
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek---------------------------V~~FeAH~---------- 97 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK---------------------------VKTFEAHS---------- 97 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEeccccee---------------------------eEEeeccc----------
Confidence 45888899988889999999999999999998874 57899999
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
+-|.+++. +|...+++++|.|-+|++||.+.+=
T Consensus 98 --DyIR~iav--HPt~P~vLtsSDDm~iKlW~we~~w------------------------------------------- 130 (794)
T KOG0276|consen 98 --DYIRSIAV--HPTLPYVLTSSDDMTIKLWDWENEW------------------------------------------- 130 (794)
T ss_pred --cceeeeee--cCCCCeEEecCCccEEEEeeccCce-------------------------------------------
Confidence 67999999 5777899999999999999998651
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.|.+++ .+|...|.+++|+| |.+.++++ -|++|++|.+. ...+.. ++++|...
T Consensus 131 ----------------a~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg-s~~~nf-------Tl~gHekG 185 (794)
T KOG0276|consen 131 ----------------ACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG-SPHPNF-------TLEGHEKG 185 (794)
T ss_pred ----------------eeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcC-CCCCce-------eeeccccC
Confidence 333444 89999999999999 67889998 99999999998 333333 37899999
Q ss_pred eEEEEEecCC-ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 270 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 270 i~~v~~~p~~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
|.|+.+-+.| ..+|++|+.|.+|++||.++..+. ++ +.||...|+.+.|+|.-.++++|++
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV----~T-------------LeGHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV----QT-------------LEGHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHH----HH-------------hhcccccceEEEecCCCcEEEEecCC
Confidence 9999998755 259999999999999999997543 33 3557889999999999999999986
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEE
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 409 (457)
|+++||+..+ -+...++...-..+ ++++-.+.++.++.|.++|.|.
T Consensus 249 GTvriWhs~T-y~lE~tLn~gleRv---------------W~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 249 GTVRIWNSKT-YKLEKTLNYGLERV---------------WCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred ccEEEecCcc-eehhhhhhcCCceE---------------EEEeecCCCCeEEEeccCCcEE
Confidence 9999999875 55544444333332 5677667777777777666553
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.7e-27 Score=201.48 Aligned_cols=246 Identities=17% Similarity=0.186 Sum_probs=191.5
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-ccCCcccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD 105 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~ 105 (457)
+...|..+|.-+.||||.++|++++.+..+++||+.++... ..+ .+|.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~---------------------------~~y~~~~~---- 312 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR---------------------------HLYPSGLG---- 312 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh---------------------------hhcccCcC----
Confidence 45669999999999999999999999999999999998853 111 1222
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..+.+.+| .|||..+++|+.|+++..||++......
T Consensus 313 --------~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDgn~~~~---------------------------------- 348 (519)
T KOG0293|consen 313 --------FSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDGNILGN---------------------------------- 348 (519)
T ss_pred --------CCcceeEE--ccCCceeEecCCCCcEEEecCCcchhhc----------------------------------
Confidence 67899999 5899999999999999999997653211
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
|. .-....|.+++..+||+++++. .|..|++++.+ ......+ -
T Consensus 349 -------------W~--------------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-~~~dr~l--------i 392 (519)
T KOG0293|consen 349 -------------WE--------------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-ARVDRGL--------I 392 (519)
T ss_pred -------------cc--------------ccccceeEEEEEcCCCcEEEEEecccceeeechh-hhhhhcc--------c
Confidence 10 1122468899999999999988 99999999998 3333322 1
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL 343 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~ 343 (457)
.-..+|++++.+.++ +++++.-.+..+++||++..+.. +.+.+|.. ...+-.-+|.. +..+++
T Consensus 393 se~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv----~kY~Ghkq-----------~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 393 SEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLV----RKYFGHKQ-----------GHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred cccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHH----HHhhcccc-----------cceEEEeccCCCCcceEE
Confidence 233679999999999 99999999999999999965433 33333111 12344445653 558999
Q ss_pred EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCC
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~ 415 (457)
+|++ +.|+||+... ++++..+.+|...+ .+++|+|. ..++|+|++||+|+||....
T Consensus 457 SGSED~kvyIWhr~s-gkll~~LsGHs~~v---------------NcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRIS-GKLLAVLSGHSKTV---------------NCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCceEEEEEccC-CceeEeecCCccee---------------eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9986 9999999986 99999999999876 58999995 56899999999999998764
No 83
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.6e-27 Score=186.03 Aligned_cols=261 Identities=17% Similarity=0.232 Sum_probs=199.7
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
+.+|.+.|..+...-.|+.|||++.|++|+|+....... .+++.+|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~------ 56 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHS------ 56 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCC------
Confidence 356999999999988999999999999999999986652 24788999999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
++|..++|..-.-|.+|++++.||.|.||.-.+++..+...
T Consensus 57 ------GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e--------------------------------- 97 (299)
T KOG1332|consen 57 ------GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE--------------------------------- 97 (299)
T ss_pred ------CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh---------------------------------
Confidence 99999999622358999999999999999988885543321
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
. ..|...|++++|.|. |-.|+++ .||.|.|.+.+..+.-... ....
T Consensus 98 -------------------------~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~-----ki~~ 146 (299)
T KOG1332|consen 98 -------------------------H-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS-----KIVF 146 (299)
T ss_pred -------------------------h-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch-----hhhh
Confidence 1 679999999999884 5677777 9999999999854221111 1256
Q ss_pred CCCCceEEEEEecC---C----------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 265 DLTEVITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 265 ~~~~~i~~v~~~p~---~----------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
.|.-.+++++|.|. | .+.|++|+.|+.|+||+...+. -.+ ..++.+|.+.|.
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------w~~---------e~~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------WKL---------ERTLEGHKDWVR 211 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc------hhh---------hhhhhhcchhhh
Confidence 79999999999986 2 1369999999999999988752 111 123678999999
Q ss_pred EEEEccCC----CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 332 DIKFANDG----QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 332 ~~~~s~~g----~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
.++|.|.- .+||+++. |++.||..+.+..+...-..+.-. + .+.+++||+.|++|+.++.|+
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~----------~---~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP----------D---VVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC----------c---ceEEEEEeccccEEEEecCCc
Confidence 99999963 57888875 999999876432222111111111 0 126999999999999999999
Q ss_pred cEEEEecCCC
Q 012721 407 LLRIFSHGVG 416 (457)
Q Consensus 407 ~i~iw~~~~~ 416 (457)
.|.+|.-+..
T Consensus 279 kvtlwke~~~ 288 (299)
T KOG1332|consen 279 KVTLWKENVD 288 (299)
T ss_pred EEEEEEeCCC
Confidence 9999986543
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.2e-26 Score=187.69 Aligned_cols=252 Identities=17% Similarity=0.281 Sum_probs=188.5
Q ss_pred cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (457)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (457)
...|.+.+.|.. -.|.++|++++.+ +.++|+|+.|-+|+|||+.....
T Consensus 28 s~~~~l~~lF~~------~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q------------------------ 75 (362)
T KOG0294|consen 28 SVKPTLKPLFAF------SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ------------------------ 75 (362)
T ss_pred ccceeeeccccc------cccccceeEEEec--ceeEeccCCCCcEEEEeccchhh------------------------
Confidence 334555554432 4499999999999 99999999999999999987764
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
+..+-.|. +.|+++.|.+....+.|++|+.||.|.+|+...=...
T Consensus 76 ---lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~-------------------- 120 (362)
T KOG0294|consen 76 ---LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL-------------------- 120 (362)
T ss_pred ---hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--------------------
Confidence 24566677 8999999954333348999999999999997653222
Q ss_pred ccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC
Q 012721 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (457)
..+ ++|.+.|+.++++|.+++-++- .|+.+++||+- .
T Consensus 121 ----------------------------------------~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-~ 158 (362)
T KOG0294|consen 121 ----------------------------------------KSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-R 158 (362)
T ss_pred ----------------------------------------eee-cccccccceeEecCCCceEEEEcCCceeeeehhh-c
Confidence 222 7899999999999999987776 99999999998 4
Q ss_pred cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
++.-.+..+ ....+.+.|+|.| .+++.+..+ .|-+|.+...++. ..... ...
T Consensus 159 Gr~a~v~~L--------~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r 210 (362)
T KOG0294|consen 159 GRVAFVLNL--------KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKR 210 (362)
T ss_pred Cccceeecc--------CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------ccc
Confidence 544433222 2334559999999 877777665 4899998875322 11111 134
Q ss_pred eEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE--EcCCCcEEEEEeCCC
Q 012721 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSN 406 (457)
Q Consensus 330 v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~s~~~dg 406 (457)
+.++.|.. +.+|++|. ++.|.+||.+. ..++..+.+|...+. ++. -.|++.+|+|++.||
T Consensus 211 ~l~~~~l~-~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 211 ILCATFLD-GSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ceeeeecC-CceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCc
Confidence 67777765 44566654 59999999985 889999999998863 343 357889999999999
Q ss_pred cEEEEecCCC
Q 012721 407 LLRIFSHGVG 416 (457)
Q Consensus 407 ~i~iw~~~~~ 416 (457)
.|+|||++..
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999865
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.7e-25 Score=184.73 Aligned_cols=279 Identities=14% Similarity=0.128 Sum_probs=212.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.+.|++|.|+|.++.|++++-||++++|+....... ..-.|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~---------- 54 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHG---------- 54 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecC----------
Confidence 579999999999999999999999999999876431 112233
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
.++.+.+| .+...+++|+.||.|+++|+.++....+
T Consensus 55 --~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~i--------------------------------------- 90 (323)
T KOG1036|consen 55 --APLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQI--------------------------------------- 90 (323)
T ss_pred --Cceeeeec---cCCceEEEeccCceEEEEEecCCcceee---------------------------------------
Confidence 88999999 3466899999999999999998865433
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
..|..+|.|+.+++....+++| .|++|++||.+ .......+ .....|
T Consensus 91 -----------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~~--------d~~kkV 138 (323)
T KOG1036|consen 91 -----------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGTF--------DQGKKV 138 (323)
T ss_pred -----------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecc-cccccccc--------ccCceE
Confidence 5799999999999977788888 99999999998 33333221 223478
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~ 349 (457)
.++.... +.|++|..|..+.+||+++..... .. .+ ....-.+.++++-|++.-.++++ +|.
T Consensus 139 y~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~------q~-re--------S~lkyqtR~v~~~pn~eGy~~sSieGR 200 (323)
T KOG1036|consen 139 YCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPF------QR-RE--------SSLKYQTRCVALVPNGEGYVVSSIEGR 200 (323)
T ss_pred EEEeccC---CEEEEeecCceEEEEEcccccchh------hh-cc--------ccceeEEEEEEEecCCCceEEEeecce
Confidence 8877653 679999999999999999865321 10 00 11124688999999776555554 699
Q ss_pred EEEEeccCC---CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 350 LKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 350 i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
|.+=.++.. .+.-..|+.|.... ...+.+++|.+++|+|-...+|||+.||.|.+||+.+. +.+..+...
T Consensus 201 VavE~~d~s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~ 273 (323)
T KOG1036|consen 201 VAVEYFDDSEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKY 273 (323)
T ss_pred EEEEccCCchHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcch-hhhhhccCC
Confidence 887666542 13345677776543 23456778899999999999999999999999999988 566667666
Q ss_pred CCcceeeeeccCCcceecccccc
Q 012721 427 KNENRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~~~~~~ 449 (457)
...|..++|+-+|...+-+-+..
T Consensus 274 ~~SI~slsfs~dG~~LAia~sy~ 296 (323)
T KOG1036|consen 274 ETSISSLSFSMDGSLLAIASSYQ 296 (323)
T ss_pred CCceEEEEeccCCCeEEEEechh
Confidence 77899999999998888755543
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=214.67 Aligned_cols=253 Identities=17% Similarity=0.291 Sum_probs=211.6
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
+...+.+..|. +.++++++.+++|++|+...+.. ....+.||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~--------- 249 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHF--------- 249 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCC---------
Confidence 57789999999 67899999999999999987763 334499999
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+.|.++++. ..+.++++|+.|.++++||..+|.+..++
T Consensus 250 ---g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~l------------------------------------- 287 (537)
T KOG0274|consen 250 ---GGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHSL------------------------------------- 287 (537)
T ss_pred ---CCceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEEe-------------------------------------
Confidence 899999993 35779999999999999999998776553
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+|...|.++... ...+++| .|.+|++|++. .+..+.+ +.+|.++
T Consensus 288 ------------------------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~ 333 (537)
T KOG0274|consen 288 ------------------------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGP 333 (537)
T ss_pred ------------------------cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------ecccccc
Confidence 6899999998875 5567777 99999999999 7777776 5669999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
|.++..+ + .++++|+.|++|++||+.+++.. +. +.+|...|.++.+.+. .++++|+ |+
T Consensus 334 V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~s-------------l~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 334 VNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KS-------------LSGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EEEEEec--C-CEEEEEecCceEEEEEhhhceee----ee-------------ecCCcceEEEEEecCc-ceEEeeeecc
Confidence 9999998 5 79999999999999999987544 22 4568899999988866 7888887 59
Q ss_pred cEEEEeccCCC-CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec-C
Q 012721 349 NLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G 426 (457)
Q Consensus 349 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~ 426 (457)
.|++||++. . +++..+.+|...+ -.....+++|++++.|++|++||..++ .+..++++ |
T Consensus 393 ~IkvWdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~ 453 (537)
T KOG0274|consen 393 TIKVWDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRH 453 (537)
T ss_pred ceEeecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccC-ceeeeeccCC
Confidence 999999986 6 7999999998764 223346789999999999999999999 77888888 6
Q ss_pred CCcceeeeec
Q 012721 427 KNENRKPILQ 436 (457)
Q Consensus 427 ~~~v~~~~~~ 436 (457)
...+..+.+.
T Consensus 454 ~~~v~~l~~~ 463 (537)
T KOG0274|consen 454 VGGVSALALG 463 (537)
T ss_pred cccEEEeecC
Confidence 7777777765
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=215.08 Aligned_cols=255 Identities=16% Similarity=0.235 Sum_probs=203.0
Q ss_pred hhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccc
Q 012721 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (457)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (457)
.|+..+.+.. .....+|.+.|++++|..-+.+|++|+.|.++++||+.+++
T Consensus 232 ~~~~~~~~~i--~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~--------------------------- 282 (537)
T KOG0274|consen 232 LWDLNNGYLI--LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE--------------------------- 282 (537)
T ss_pred EeecccceEE--EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc---------------------------
Confidence 3544443332 23356799999999999878999999999999999988776
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
+...+.+|. ..|.++.. ...++++|+.|.+|++|+++++..+.+.
T Consensus 283 C~~~l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~------------------- 327 (537)
T KOG0274|consen 283 CTHSLQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLL------------------- 327 (537)
T ss_pred EEEEecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEe-------------------
Confidence 778999999 78999887 3457888999999999999988766542
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (457)
.+|..+|+++..+ +.++++| .|++|++||+. ..+
T Consensus 328 ------------------------------------------~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~ 362 (537)
T KOG0274|consen 328 ------------------------------------------RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGK 362 (537)
T ss_pred ------------------------------------------ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hce
Confidence 4699999999997 7889998 99999999999 778
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCC-eeeccccccccccccccCcccceeccccce
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASI 330 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 330 (457)
++.. +.+|...|+++.+.+. +.+++|+.|++|++||+++. ++. .++ .+|.+-+
T Consensus 363 cl~s-------l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~----~tl-------------~~h~~~v 416 (537)
T KOG0274|consen 363 CLKS-------LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI----HTL-------------QGHTSLV 416 (537)
T ss_pred eeee-------ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh----hhh-------------cCCcccc
Confidence 8865 7899999999988774 67999999999999999997 322 333 4456666
Q ss_pred EEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 408 (457)
..+.+ .+++|++++ |++|++||... ++++..+.++ ...+ ..+++. ...+++++.||++
T Consensus 417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 417 SSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSV 476 (537)
T ss_pred ccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCee
Confidence 55544 478899876 59999999986 8888888884 3332 344443 4678899999999
Q ss_pred EEEecCCCCceeeEE
Q 012721 409 RIFSHGVGSAGGITV 423 (457)
Q Consensus 409 ~iw~~~~~~~~~~~~ 423 (457)
++||++++ .....+
T Consensus 477 ~l~dl~~~-~~~~~l 490 (537)
T KOG0274|consen 477 KLWDLRSG-TLIRTL 490 (537)
T ss_pred EEEecccC-chhhhh
Confidence 99999999 444433
No 88
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2e-25 Score=183.07 Aligned_cols=303 Identities=17% Similarity=0.235 Sum_probs=211.2
Q ss_pred ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.|.+.|+++...+ .|+|+++|+.||.|.+||++..... ..-..+.++-|.+. ...-.+|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~----e~s~li~k~~c~v~--------~~h~~~Hk------- 101 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY----EASGLIAKHKCIVA--------KQHENGHK------- 101 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccch----hhccceeheeeecc--------ccCCccce-------
Confidence 4999999999998 6899999999999999999865421 00001111111000 00112333
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
-.|..+.|.|... .+|.+++.|.++++||.++-+....+.
T Consensus 102 -----y~iss~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a~~F~---------------------------------- 141 (397)
T KOG4283|consen 102 -----YAISSAIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEAVDFK---------------------------------- 141 (397)
T ss_pred -----eeeeeeEEeeecC-ceeecccccceEEEeecccceeeEEee----------------------------------
Confidence 7899999988444 499999999999999998865443322
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
-.+.|++-+++| ...++|+| .|-.|++-|+. .+....+ +.
T Consensus 142 ----------------------------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~-------Ls 185 (397)
T KOG4283|consen 142 ----------------------------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT-------LS 185 (397)
T ss_pred ----------------------------cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee-------ec
Confidence 233566666776 35577888 99999999999 6666654 79
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc-cccCcccceeccccceEEEEEccCCCeEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
+|...|.++.|+|.....|++|+.||.|++||++...-+ ..+++.|. ..+.....-..|.+.|..++|+.++.+++
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 999999999999988678999999999999999875322 14444433 22223335678999999999999999999
Q ss_pred EE-ecCcEEEEeccCCCCceeEee--eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721 344 SR-DYMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (457)
Q Consensus 344 s~-~~~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 420 (457)
+. .|..+++|+...+...+..+. .|..... +. ..+. +.+...++---.++.+.++++-++ ..+
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~-----------~~-~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~i 328 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTS-----------FA-VHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFV 328 (397)
T ss_pred hccCccceEEeecccCccccccccccccccccc-----------ce-EEEe-ecccceEEEEecCCeEEEEEccCc-eEE
Confidence 75 579999999976333332221 1211110 00 1122 334445555556788999999998 678
Q ss_pred eEEecCCCcceeeeeccCCcceec
Q 012721 421 ITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 421 ~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
..+..|-..+.+-++.|+...-.+
T Consensus 329 r~l~~h~k~i~c~~~~~~fq~~~t 352 (397)
T KOG4283|consen 329 RRLSTHLKRINCAAYRPDFEQCFT 352 (397)
T ss_pred EeeecccceeeEEeecCchhhhhc
Confidence 888999888888888888655444
No 89
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=6.6e-26 Score=188.17 Aligned_cols=299 Identities=14% Similarity=0.178 Sum_probs=219.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (457)
-...+.|||||..|.+-+.|..+.+|++....-.+ +.+... ......+++-.. .
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~----------~~~~~~-----~~~~~~~~r~~e-----------g 104 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK----------KADGPL-----NFSKHLSYRYQE-----------G 104 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhccc----------CCCCcc-----ccccceeEEecc-----------C
Confidence 45678999999999999999999999985322100 000000 000001111111 1
Q ss_pred CcEEEEEEEe-----cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 114 EKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 114 ~~V~~v~~~~-----s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|..-+|.+ .|+.+++++.+.+.-|++||.-+|+.......
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~--------------------------------- 151 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA--------------------------------- 151 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh---------------------------------
Confidence 4577778863 36678999999999999999999987654321
Q ss_pred ccccccceEEEeccCccccccceeeccCCCC---CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
..|.. ...+++|+|||..|++|....|++||+...+.....+....+...+
T Consensus 152 --------------------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 152 --------------------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred --------------------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccc
Confidence 12222 3458999999999999999999999995466544433222222344
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
..+-+.+++|+|..+..++.|+...++-||.-..+..+ .+ +.+|.+.|+.++|.++|+.|.+|
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~l-------------lggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QL-------------LGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----ee-------------ecccCCCeeeEEeccCcCeeccc
Confidence 56889999999988679999999999988876665432 12 34688999999999999999998
Q ss_pred e--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721 346 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 423 (457)
. +..|..||++....++..+..|...-+ .. .-....|++++|++|+.||.|++||++.-......+
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QR----I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTN--------QR----ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCcc--------ce----EEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 6 489999999987788888877765211 11 246667899999999999999999999854678888
Q ss_pred ecCCCcceeeeeccCCcceeccc
Q 012721 424 EAGKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 424 ~~~~~~v~~~~~~p~~~~~~~~~ 446 (457)
..++..++.|+++|.-|..+.+-
T Consensus 337 ~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ccccccccceecCcccceeeecc
Confidence 99999999999999999988833
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.6e-25 Score=172.72 Aligned_cols=255 Identities=18% Similarity=0.308 Sum_probs=189.0
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|+|.+|||+|++||+|++|.+|++........ ...||+-||.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~-----------------------------~~~g~dle~n---- 133 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC-----------------------------NATGHDLEFN---- 133 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccc-----------------------------cccCcceeee----
Confidence 4889999999999999999999999999987654332 1233332221
Q ss_pred ccccCcEEEEEEEecC--CCCEEEEee-CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 110 LEIEEKINRVRWCAAP--NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~--~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
.|++.|..++|...| .+.+|++++ .|..|.+-|...|+...
T Consensus 134 -mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~----------------------------------- 177 (350)
T KOG0641|consen 134 -MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH----------------------------------- 177 (350)
T ss_pred -ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce-----------------------------------
Confidence 133899999998533 355666654 56666666666654322
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
.+ .+|++.|.++ ++-++-.+++| .|.+|++||++ ...++++++.....-.-
T Consensus 178 -------------------------a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 178 -------------------------AL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGL 229 (350)
T ss_pred -------------------------ee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCc
Confidence 22 6888888876 23368899999 99999999999 67777776543211111
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
.+..|.+++..|.| ++|++|-.|....+||++.+... .. +..|...|.++.|+|...|++++
T Consensus 230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~i-------q~----------f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI-------QR----------FHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee-------ee----------eCCCccceeEEEeCCCceEEEEe
Confidence 23679999999999 99999999999999999998543 22 34578899999999999999999
Q ss_pred ec-CcEEEEeccCC---CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 346 DY-MNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 346 ~~-~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+. ..|++-|+.-. .-++.....|.... ..+.|+|..-.+++.+.|.++.+|-++
T Consensus 292 syd~~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccceEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence 86 99999998521 11233344555543 589999999999999999999999864
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=189.60 Aligned_cols=305 Identities=16% Similarity=0.203 Sum_probs=227.0
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|.+.|+.++-......+.+++.|.+.+||.++++. ++.++.||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------CL~~Y~GH~------ 190 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------CLATYTGHT------ 190 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecccc---------------------------ceeeecccc------
Confidence 45699999999999888899999999999999999887 678899999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEE----EeecCCCceeeeeeccccccccccCCCCCce
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
+.|++|.| ++.+.++++++.|++..||...-.-.... .......+.. .... . .
T Consensus 191 ------GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e------------~sDe--~-~ 247 (481)
T KOG0300|consen 191 ------GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE------------HSDE--H-N 247 (481)
T ss_pred ------cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh------------cccc--c-c
Confidence 99999999 57888999999999999998332111000 0000000000 0000 0 0
Q ss_pred eccCCcccccc-ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 184 HGYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 184 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
-..++.-..++ .|+ .++..+ .+|...|.+..|-..|+.++++ .|.+..+||++ .++.+++
T Consensus 248 ~d~d~~~~sD~~tiR----------vPl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-tge~v~~------ 309 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIR----------VPLMRL-TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-TGEVVNI------ 309 (481)
T ss_pred cccccccccCCceee----------eeeeee-eccccceEehhhhcCcceeeeeeccccceeeeec-cCceecc------
Confidence 00000000000 122 233333 7899999999999999999999 99999999999 6777765
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
+.+|....+.++-+|.. +++++++.|-+.++||++.. ...+ ..|.+|...|+++.|.-+. .
T Consensus 310 -LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea---I~sV-------------~VFQGHtdtVTS~vF~~dd-~ 370 (481)
T KOG0300|consen 310 -LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA---IQSV-------------AVFQGHTDTVTSVVFNTDD-R 370 (481)
T ss_pred -ccCcchhccccccCCcc-eEEEEeccCceeEeccchhh---ccee-------------eeecccccceeEEEEecCC-c
Confidence 78999999999999998 99999999999999999852 1111 2366788999999998765 5
Q ss_pred EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc--
Q 012721 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA-- 418 (457)
Q Consensus 342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~-- 418 (457)
+++|+| .+|++||++....++.+++..... ..++.+..+..|+.--++..|++||++-...
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 666665 999999998767788888765543 4788888888999999999999999975421
Q ss_pred -eeeEEecCCCcceeeeeccCCcc
Q 012721 419 -GGITVEAGKNENRKPILQAAPRA 441 (457)
Q Consensus 419 -~~~~~~~~~~~v~~~~~~p~~~~ 441 (457)
+...-++|..-|.+.+|.-+-|.
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred CCcccccccceeeeeeeccccCcc
Confidence 12245799999999999876554
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=203.37 Aligned_cols=264 Identities=17% Similarity=0.173 Sum_probs=189.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...|.+++|++.|..|++.+.....+|+|-++.+... |. +.+. ...-+...+||.
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e----~~----KGDQ-------YI~Dm~nTKGHi---------- 268 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE----FS----KGDQ-------YIRDMYNTKGHI---------- 268 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeee----ee----ccch-------hhhhhhccCCce----------
Confidence 4589999999999888877777889999987655320 00 0000 011223346676
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-EEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..++|.+|+| .+...|++++.||++++|++++-+.. .++....
T Consensus 269 --a~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--------------------------------- 312 (641)
T KOG0772|consen 269 --AELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--------------------------------- 312 (641)
T ss_pred --eeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeecc---------------------------------
Confidence 8899999976 34568999999999999999875432 2222111
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC-
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE- 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 268 (457)
..+..-+++.++|++++++||+| .||+|.+|+........ .+.+ -.+|..
T Consensus 313 -----------------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p-~~~v----k~AH~~g 364 (641)
T KOG0772|consen 313 -----------------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP-VMKV----KDAHLPG 364 (641)
T ss_pred -----------------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc-ceEe----eeccCCC
Confidence 03455678999999999999999 99999999976222111 1111 356766
Q ss_pred -ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 269 -VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 269 -~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
.|+||.|+++| ++|++-+.|+++++||+++.+... .++.+ .+. .-+-+.++|||+.++|++|+
T Consensus 365 ~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tg---L~t--------~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 365 QDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTG---LPT--------PFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcC---CCc--------cCCCCccccCCCceEEEeccc
Confidence 89999999999 999999999999999999876432 22222 000 13457889999999999874
Q ss_pred ----c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 347 ----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 347 ----~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
. |.+.+||..+ ...+..+......+ ..+.|+|.-+.|+.|+.||.+++|--.+
T Consensus 430 ~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCceEEEECcc
Confidence 2 7899999865 55666655544332 5899999999999999999999985444
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=191.86 Aligned_cols=246 Identities=15% Similarity=0.249 Sum_probs=203.7
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cCCccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~ 106 (457)
...+.++|.|++||.|...||+|+.||.|++|.+.++. +++.|. +|+
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~---------------------------ClRrFdrAHt----- 306 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ---------------------------CLRRFDRAHT----- 306 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecch---------------------------HHHHhhhhhc-----
Confidence 34589999999999999999999999999999999887 344454 677
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|+++.| +.|+..+++++.|.++++.-+..|+..
T Consensus 307 -------kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~L------------------------------------ 341 (508)
T KOG0275|consen 307 -------KGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCL------------------------------------ 341 (508)
T ss_pred -------cCeeEEEE--ccCcchhhcccccceEEEeccccchhH------------------------------------
Confidence 89999999 799999999999999999988877543
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
+.+ .+|...|+...|.++|..++++ .||+|++|+.+ ..++..++.. .+
T Consensus 342 ------------------------KEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk~-----~~ 390 (508)
T KOG0275|consen 342 ------------------------KEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFKP-----LG 390 (508)
T ss_pred ------------------------HHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhccC-----CC
Confidence 333 7999999999999999999999 99999999999 6777776532 33
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
...+|.++-.-|..+..++++...++|.+-++...- . +.|.. +.. ..+...+.+.+|.|.++.+.
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-V----rsfsS---GkR-------EgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-V----RSFSS---GKR-------EGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-E----eeecc---CCc-------cCCceEEEEecCCCcEEEEE
Confidence 557788998889888899999999999999987531 1 33332 000 12456677899999999975
Q ss_pred e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 346 ~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
+ |+.++.+...+ +++...+..|+..+ ..++-+|..+.||+-++||.+++|.
T Consensus 456 gED~vlYCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 456 GEDGVLYCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCcEEEEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchhhhcC
Confidence 4 69999999975 88888898888654 5788999999999999999999995
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=196.34 Aligned_cols=241 Identities=15% Similarity=0.240 Sum_probs=187.1
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
+-.++|+++.|.+++.++++++.|+.+++|+++..+ ...+|.||+
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r---------------------------~~~TLsGHt-------- 261 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR---------------------------LRHTLSGHT-------- 261 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchh---------------------------hhhhhcccc--------
Confidence 456789999999999999999999999999998766 457899999
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|+++.| ......+++++.|.+|++||+....+....-
T Consensus 262 ----dkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l----------------------------------- 300 (459)
T KOG0288|consen 262 ----DKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAYCSKTVL----------------------------------- 300 (459)
T ss_pred ----cceeeehh--hccccceeeccccchhhhhhhhhhheecccc-----------------------------------
Confidence 88999999 4454459999999999999998865543211
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
. ...+..+..+ ...+++| .|+.|++||.+ ...+...+ +.+ +
T Consensus 301 -------------------------~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R-s~~~~~sv-------~~g-g 342 (459)
T KOG0288|consen 301 -------------------------P--GSQCNDIVCS--ISDVISGHFDKKVRFWDIR-SADKTRSV-------PLG-G 342 (459)
T ss_pred -------------------------c--cccccceEec--ceeeeecccccceEEEecc-CCceeeEe-------ecC-c
Confidence 1 1123344443 5567888 99999999998 44454442 323 5
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
.|+++..++++ ..+++++.|.++.+.|+++.+.. ..+.. .....+ ...+.+.|||++.|+++|+.
T Consensus 343 ~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA-------~g~k~a--sDwtrvvfSpd~~YvaAGS~d 408 (459)
T KOG0288|consen 343 RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSA-------EGFKCA--SDWTRVVFSPDGSYVAAGSAD 408 (459)
T ss_pred ceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeec-------cccccc--cccceeEECCCCceeeeccCC
Confidence 89999999999 88888899999999999997654 23322 111222 34889999999999999974
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
|.|+||++.+ +++...+....... .|++++|+|.|..|++++.++.+.+|.
T Consensus 409 gsv~iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 409 GSVYIWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CcEEEEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999986 78877776544331 127999999999999999999999994
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=185.81 Aligned_cols=295 Identities=14% Similarity=0.156 Sum_probs=191.1
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccc-cCCCcc---------------
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS-TSHPEY--------------- 91 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------- 91 (457)
...|.+.|++++|+.||++|||++.|++|+||++++-... .+.|++.-...+.++- .+.|.-
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~--eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK--EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh--hhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 3459999999999999999999999999999998764321 1222221111111111 222211
Q ss_pred -ceeeeeccCC-cccccccc--c--cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721 92 -RYKTEFQSHE-PEFDYLKS--L--EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (457)
Q Consensus 92 -~~~~~~~~h~-~~~~~~~~--~--~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 165 (457)
.....-.|.- ..|..... + .|...|..+-. ..++.+|++++.|..|.+|++. |+.+..+.
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~id----------- 225 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSID----------- 225 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeec-----------
Confidence 1111111100 00000000 0 12234555555 4678899999999999999998 55443322
Q ss_pred eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw 244 (457)
.....-+..+.+|+|++++++ ..-.|++|
T Consensus 226 --------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVkVw 255 (420)
T KOG2096|consen 226 --------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVKVW 255 (420)
T ss_pred --------------------------------------------------cccccccceeeCCCCcEEEEecCCCCceEE
Confidence 112234467899999999998 88999999
Q ss_pred EcCCCc--ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721 245 NLEISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 245 d~~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
.+--++ ....+. +..++++|...|..++|+++. ..+++.+.||++++||+.-.-...+..++++. .+ ..
T Consensus 256 E~~f~kdG~fqev~--rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~---g~---~p 326 (420)
T KOG2096|consen 256 EPIFTKDGTFQEVK--RVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE---GS---AP 326 (420)
T ss_pred EEEeccCcchhhhh--hhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhc---CC---cc
Confidence 875221 111110 113578999999999999998 99999999999999998765444433344443 10 01
Q ss_pred eeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 323 FTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
+..-.+.-..+.++|+|+.||.+....++++..+. ++.+..+. .|+..+ .+++|+++|+++++
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~-g~~~~~~e~~h~~~I---------------s~is~~~~g~~~at 390 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED-GKDYPELEDIHSTTI---------------SSISYSSDGKYIAT 390 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc-CccchhHHHhhcCce---------------eeEEecCCCcEEee
Confidence 11222334489999999999988878999999986 55554443 455544 69999999999998
Q ss_pred EeCCCcEEEEecC
Q 012721 402 GSYSNLLRIFSHG 414 (457)
Q Consensus 402 ~~~dg~i~iw~~~ 414 (457)
+++ ..+++..-.
T Consensus 391 cGd-r~vrv~~nt 402 (420)
T KOG2096|consen 391 CGD-RYVRVIRNT 402 (420)
T ss_pred ecc-eeeeeecCC
Confidence 884 678877633
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=181.57 Aligned_cols=232 Identities=18% Similarity=0.275 Sum_probs=188.1
Q ss_pred eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (457)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (457)
+.+++|. +.|.+|+| +.+|..|++++.|+++++|+++..+......
T Consensus 14 r~~~~~~------------~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~-------------------- 59 (313)
T KOG1407|consen 14 RELQGHV------------QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELV-------------------- 59 (313)
T ss_pred HHhhhhh------------hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhhc--------------------
Confidence 4567777 88999999 7899999999999999999998764322111
Q ss_pred ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcce
Q 012721 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC 252 (457)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (457)
..+|.+.|-.++|+| ....|+++ .|.+|++||.+ .+++
T Consensus 60 ---------------------------------------~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~~k~ 99 (313)
T KOG1407|consen 60 ---------------------------------------YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-SGKC 99 (313)
T ss_pred ---------------------------------------ccCCCcchhhheeCCCCCcceEEecCCceEEEEEec-cCcE
Confidence 168999999999987 56678888 99999999999 5555
Q ss_pred eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
...+. ....-.-+.|+|+| .+++.++.|..|.+.|.++.+... ..+. ...+..
T Consensus 100 ~~~i~--------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~----~~~~--------------~~e~ne 152 (313)
T KOG1407|consen 100 TARIE--------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVN----EEQF--------------KFEVNE 152 (313)
T ss_pred EEEee--------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceee----hhcc--------------cceeee
Confidence 54432 12333457899999 999999999999999999864321 1111 235778
Q ss_pred EEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721 333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 333 ~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw 411 (457)
++|+.++.+++..+. |+|.|..... -+++..++.|.... .++.|+|+|+|+|+|+.|-.+.+|
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeecc
Confidence 899877777765554 9999999864 89999999998653 589999999999999999999999
Q ss_pred ecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|++.. .+...+.-+.-||+.++|+.++++.++
T Consensus 217 D~~EL-iC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 217 DVDEL-ICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred ChhHh-hhheeeccccCceEEEEeccCcceeec
Confidence 99988 788999999999999999999999998
No 97
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=178.56 Aligned_cols=220 Identities=21% Similarity=0.306 Sum_probs=183.3
Q ss_pred eeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (457)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (457)
...+.+++ ++|..+.| +-+|++.++++.|++|++|+...+.+...
T Consensus 10 ~~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt--------------------- 54 (307)
T KOG0316|consen 10 LSILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT--------------------- 54 (307)
T ss_pred ceeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee---------------------
Confidence 34567777 89999999 78999999999999999999888765543
Q ss_pred cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce
Q 012721 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (457)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (457)
+ .+|..+|..++.+.|...|++| .|..+.+||++ .++.
T Consensus 55 ---------------------------------------Y-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv 93 (307)
T KOG0316|consen 55 ---------------------------------------Y-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKV 93 (307)
T ss_pred ---------------------------------------e-cCCCceeeeccccccccccccCCCCceEEEEEcc-cCee
Confidence 3 6899999999999999999999 99999999999 6666
Q ss_pred eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
.+- +.+|.+.|..+.|+.+. ..+++|+.|.++++||.++... .+++++. .....|.+
T Consensus 94 ~Rr-------~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQild-------------ea~D~V~S 150 (307)
T KOG0316|consen 94 DRR-------FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILD-------------EAKDGVSS 150 (307)
T ss_pred eee-------cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhh-------------hhcCceeE
Confidence 643 78999999999999998 9999999999999999998542 2233333 33567888
Q ss_pred EEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721 333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 333 ~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw 411 (457)
+..+ +..|++|+ ||+++.||++. +++...+.+|.- ++++|++|++..+.++-|+++++.
T Consensus 151 i~v~--~heIvaGS~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 151 IDVA--EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred EEec--ccEEEeeccCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeec
Confidence 8876 66778876 59999999997 777666666543 689999999999999999999999
Q ss_pred ecCCCCceeeEEecCCCcceee
Q 012721 412 SHGVGSAGGITVEAGKNENRKP 433 (457)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~v~~~ 433 (457)
|-.+| +.+....+|...-..+
T Consensus 211 Dk~tG-klL~sYkGhkn~eykl 231 (307)
T KOG0316|consen 211 DKETG-KLLKSYKGHKNMEYKL 231 (307)
T ss_pred ccchh-HHHHHhcccccceeee
Confidence 99999 7888888887654433
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=5.2e-25 Score=189.61 Aligned_cols=246 Identities=15% Similarity=0.219 Sum_probs=193.3
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|+..|+.+.|+|+...+++++.|..|+||....... ......|+
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------------------------~~~~~~h~------ 303 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------------------------PTSSRPHE------ 303 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------------------------cccccccc------
Confidence 345999999999999999999999999999999875543 23456677
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
++|+.+.. .++|.||++++.|++..+.|++++........
T Consensus 304 ------~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-------------------------------- 343 (506)
T KOG0289|consen 304 ------EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-------------------------------- 343 (506)
T ss_pred ------ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEee--------------------------------
Confidence 89999999 68999999999999999999999876654321
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
....-.+++++|+|||.+|.+| .|+.|+|||+..+. .. ..+.+|
T Consensus 344 ---------------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~-------a~Fpgh 388 (506)
T KOG0289|consen 344 ---------------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NV-------AKFPGH 388 (506)
T ss_pred ---------------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-cc-------ccCCCC
Confidence 1233468899999999999999 99999999999433 33 247899
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.++|..++|+.+| .+|+++..|+.|++||+|..+.. +.+.. . -...+.++.|.+.|.||+.++
T Consensus 389 t~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l-~-----------~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 389 TGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQL-D-----------EKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred CCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeec-c-----------ccccceeEEEcCCCCeEEeec
Confidence 9999999999999 99999999999999999986533 33332 0 013699999999999999874
Q ss_pred c-CcEEEEeccC-CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 347 Y-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 347 ~-~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
. =.|++++-.+ .-..+..+..|.+.. +.+.|..+.+++++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence 2 4444444221 123444555555433 67899999999999999999988764
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=208.18 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=188.3
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecc-ccccccccCCCCCceeccCCc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL-AEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+|+++|.++.| ++||+|||+|+.|+.|+||.+...+......... .++-+.. .++. +.+.............
T Consensus 265 ah~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~----~~~~~~~~~~s~-~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDS----SCMYFEYNANSQ-IEPSTSSEEKISSRTS 337 (712)
T ss_pred ccCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhccccccc----chhhhhhhhccc-cCcccccccccccccc
Confidence 45599999999 8999999999999999999988744322111000 0000000 0000 0000000000000000
Q ss_pred c----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 190 W----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 190 ~----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
. .....+.+-+.......+++..+ .+|.+.|..+.|+.++ +|+++ .|.+|+||++. ...++.++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~F-------- 406 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKVF-------- 406 (712)
T ss_pred ccccccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeEE--------
Confidence 0 00001222222222344667777 8999999999999665 55666 99999999999 78888874
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
.|.+.|+||+|+|-..++|++|+.||.||||++...+.. .+.. -..-|++++|.|||++.+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVI 468 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEE
Confidence 499999999999977799999999999999999886533 2221 1257999999999999999
Q ss_pred Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~ 422 (457)
|+. |.+++|+... .+....+..+...-... .-..|+.+.|.|. ...|+..+.|..|+|+|.+.. ..+.+
T Consensus 469 Gt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~-------~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~K 539 (712)
T KOG0283|consen 469 GTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKK-------QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHK 539 (712)
T ss_pred EEeccEEEEEEccC-CeEEEeeeEeeccCccc-------cCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhh
Confidence 997 9999999973 55555544332210000 0002378888874 345778889999999999766 56666
Q ss_pred EecCCCcc--eeeeeccCCcceec
Q 012721 423 VEAGKNEN--RKPILQAAPRARRS 444 (457)
Q Consensus 423 ~~~~~~~v--~~~~~~p~~~~~~~ 444 (457)
++|+...- ....|+.||....+
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred hcccccCCcceeeeEccCCCEEEE
Confidence 77654332 34467777766655
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-26 Score=212.70 Aligned_cols=246 Identities=18% Similarity=0.308 Sum_probs=193.1
Q ss_pred ceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 34 ~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
.+..|.|+. +.++|||++..|.|.+||+..... .+.+..|..|+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------nk~l~~f~EH~----------- 133 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------------------------NKLLTVFNEHE----------- 133 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc------------------------chhhhHhhhhc-----------
Confidence 445577765 468999999999999999976211 11445678888
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..++++.|+ +....+|++|+.||+|++||++..+.....
T Consensus 134 -Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~--------------------------------------- 172 (839)
T KOG0269|consen 134 -RSANKLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTF--------------------------------------- 172 (839)
T ss_pred -cceeeeeec-cCCccEEEecCCCceEEEEeeecccccccc---------------------------------------
Confidence 889999998 456679999999999999999876544321
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
.+....|..+.|+| .+..|+++ +.|.+.+||++...++.. .+.+|.++|
T Consensus 173 ----------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-------k~~AH~GpV 223 (839)
T KOG0269|consen 173 ----------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-------KLTAHNGPV 223 (839)
T ss_pred ----------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-------HhhcccCce
Confidence 34566789999998 67788888 999999999996666553 378999999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE-EEEe---
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRD--- 346 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~--- 346 (457)
.|+.|+|++ .+||+|+.|+.|+|||+...+.. ...++.. ..+|.++.|-|...+. |+++
T Consensus 224 ~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 224 LCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred EEEeecCCC-ceeeecCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccc
Confidence 999999998 99999999999999999875422 1122222 3679999999987664 4443
Q ss_pred cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 012721 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
|-.|+|||++.+.-+..++..|...+ +.++|.. |...+.+++.||+|..-.++++
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cceEEEEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 48999999987788889999998876 6788854 5678889999999877766665
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.2e-25 Score=199.29 Aligned_cols=266 Identities=18% Similarity=0.232 Sum_probs=210.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
-...-+.|+ ..+.||+|.. ..|++|+..++... .+..+. .
T Consensus 178 fY~nlldWs-s~n~laValg-~~vylW~~~s~~v~-------------------------~l~~~~--~----------- 217 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALG-QSVYLWSASSGSVT-------------------------ELCSFG--E----------- 217 (484)
T ss_pred HhhhHhhcc-cCCeEEEEec-ceEEEEecCCCceE-------------------------EeEecC--C-----------
Confidence 344557788 4567788764 36999998887642 122222 3
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..|+++.| +++|.+|++|..+|.|.|||..+.+....+.
T Consensus 218 -~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~-------------------------------------- 256 (484)
T KOG0305|consen 218 -ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR-------------------------------------- 256 (484)
T ss_pred -CceEEEEE--CCCCCEEEEeecCCeEEEEehhhcccccccc--------------------------------------
Confidence 67999999 7999999999999999999988765443221
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
..|...|-+++|+ +..+.+| .|+.|..+|++.......+ +.+|...|.
T Consensus 257 ----------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qeVC 305 (484)
T KOG0305|consen 257 ----------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQEVC 305 (484)
T ss_pred ----------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccceee
Confidence 2388999999997 6778888 9999999999955444432 688999999
Q ss_pred EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe---c
Q 012721 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD---Y 347 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~---~ 347 (457)
.++|++++ .++|+|+.|+.+.|||..... ....+..|...|.+++|+|- ..+||+|+ |
T Consensus 306 gLkws~d~-~~lASGgnDN~~~Iwd~~~~~-----------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 306 GLKWSPDG-NQLASGGNDNVVFIWDGLSPE-----------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred eeEECCCC-CeeccCCCccceEeccCCCcc-----------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 99999999 999999999999999984432 22335678999999999995 56788764 5
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE--eCCCcEEEEecCCCCceeeEEec
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
+.|++||..+ ++.+..+...... .++.|++..+-|+++ -.++.|.||+..+. +....+.+
T Consensus 368 ~~i~fwn~~~-g~~i~~vdtgsQV----------------csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g 429 (484)
T KOG0305|consen 368 RCIKFWNTNT-GARIDSVDTGSQV----------------CSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLG 429 (484)
T ss_pred cEEEEEEcCC-CcEecccccCCce----------------eeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecC
Confidence 9999999985 7777776655443 589999987656553 34778999999997 78899999
Q ss_pred CCCcceeeeeccCCcceeccc
Q 012721 426 GKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 426 ~~~~v~~~~~~p~~~~~~~~~ 446 (457)
|...|-.++++||+....+|.
T Consensus 430 H~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 430 HTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred CcceeEEEEECCCCCEEEEec
Confidence 999999999999998888843
No 102
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.2e-24 Score=177.05 Aligned_cols=283 Identities=12% Similarity=0.182 Sum_probs=197.7
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+-|.|+.|.+.|+.+|||+.|++|+|||.+.... .+.+....+.|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence 35889999999999999999999999999999855442 677888899999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|..|.|.+..-|+.+|+++.|+++.||.-.......
T Consensus 60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~------------------------------------- 97 (361)
T KOG2445|consen 60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA------------------------------------- 97 (361)
T ss_pred -----CcEEEEEecCccccceEEEEecCCceeeeeeccccccc-------------------------------------
Confidence 99999999865559999999999999999854211110
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecC------
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMK------ 259 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------ 259 (457)
.-+-|. .+..+......|+.+.|.| -|-.|+++ .||.|+||+.-... .+..+.+.
T Consensus 98 ------~~~~Wv---------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 98 ------HGRRWV---------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWTLQHEIQNV 161 (361)
T ss_pred ------ccceeE---------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccchhhhhhhhc
Confidence 000111 1111256677899999998 57788888 99999999876322 11111111
Q ss_pred CCcccCCCCceEEEEEecCC--ccEEEEEccC-----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 260 PSNMDDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~--~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
+.....+.....|+.|+|.. ..+||.|+.+ +.+.||....+. +.+. ....+.+|..+|+.
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~------rKw~-------kva~L~d~~dpI~d 228 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG------RKWL-------KVAELPDHTDPIRD 228 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc------ceee-------eehhcCCCCCccee
Confidence 01123466778899999743 3588888866 578888766542 1111 11224578899999
Q ss_pred EEEccC----CCeEEEEec-CcEEEEeccCCC-------------------CceeEeeeccccccccccccCCCCccccc
Q 012721 333 IKFAND----GQHLLSRDY-MNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (457)
Q Consensus 333 ~~~s~~----g~~l~s~~~-~~i~~wd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 388 (457)
++|.|+ -..||+++. | |+||.++... +.+..+..|.+.+ .
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------W 292 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------W 292 (361)
T ss_pred eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------E
Confidence 999996 246777764 7 9999986311 1223344454433 7
Q ss_pred eEEEcCCCcEEEEEeCCCcEEEEecC--CCCceeeEEecCCC
Q 012721 389 ECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITVEAGKN 428 (457)
Q Consensus 389 ~~~~s~d~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~ 428 (457)
.+.|+-.|..|++.+.||.|++|... +..++...+++...
T Consensus 293 rv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 293 RVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred EEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCC
Confidence 99999999999999999999999854 44455555555443
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.3e-24 Score=207.65 Aligned_cols=270 Identities=16% Similarity=0.266 Sum_probs=197.0
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
....|.+.|+|+.|+|||++||+|+.|+.|.||+...... ...+.. .|. ......++.+..+.+|+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~---~~~fgs----~g~--~~~vE~wk~~~~l~~H~----- 129 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS---GTVFGS----TGG--AKNVESWKVVSILRGHD----- 129 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC---cccccc----ccc--ccccceeeEEEEEecCC-----
Confidence 3446999999999999999999999999999999874110 000000 000 01223678889999999
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|..++| +|++.+|++++.|++|.+|+..+.+....+
T Consensus 130 -------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~~vl--------------------------------- 167 (942)
T KOG0973|consen 130 -------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELLKVL--------------------------------- 167 (942)
T ss_pred -------Cccceecc--CCCccEEEEecccceEEEEccccceeeeee---------------------------------
Confidence 77999999 789999999999999999999887444332
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
.+|...|..+.|.|-|++||+- +|++|++|++. .-...+.+. +|..-..
T Consensus 168 ----------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~-dw~i~k~It-~pf~~~~ 217 (942)
T KOG0973|consen 168 ----------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS-DWGIEKSIT-KPFEESP 217 (942)
T ss_pred ----------------------------ecccccccceEECCccCeeeeecCCceEEEEEcc-cceeeEeec-cchhhCC
Confidence 6899999999999999999997 99999999976 333333321 1111112
Q ss_pred CCCceEEEEEecCCccEEEEEcc----CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--- 338 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--- 338 (457)
....+..+.|+||| .+|++.-. -.++.|.+-.+-+ ....+.||..++.++.|+|.
T Consensus 218 ~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk-----------------~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWK-----------------VDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred CcceeeecccCCCc-CeecchhhccCCcceeEEEecCCce-----------------eeeeeecCCCceEEEEeChHHhc
Confidence 23457889999999 99988742 2345555543322 12236789999999999982
Q ss_pred ---C---------C--eEEEEe-cCcEEEEeccCCCCceeEeee-ccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 339 ---G---------Q--HLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 339 ---g---------~--~l~s~~-~~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
. . .+|+|+ |++|.||.... .+++..... .... |.+++|+|||..|+.+
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~S---------------I~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKS---------------IVDMSWSPDGFSLFAC 343 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCc---------------eeeeeEcCCCCeEEEE
Confidence 1 1 345666 59999999864 566654432 1222 2699999999999999
Q ss_pred eCCCcEEEEecCCC
Q 012721 403 SYSNLLRIFSHGVG 416 (457)
Q Consensus 403 ~~dg~i~iw~~~~~ 416 (457)
|.||+|.+..+...
T Consensus 344 S~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 344 SLDGTVALIHFEEK 357 (942)
T ss_pred ecCCeEEEEEcchH
Confidence 99999999998765
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-24 Score=201.13 Aligned_cols=276 Identities=14% Similarity=0.189 Sum_probs=207.6
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|+...+.++|.|+|++|.+++.||.|++|+....... |+ ++.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---------------------P~-----ti~~~g------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---------------------PE-----TIDISG------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---------------------Cc-----hhhccC-------
Confidence 358999999999999999999999999999997655221 00 111133
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++. ++++|++++.+++|.+|.+..++...++
T Consensus 57 -----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL----------------------------------- 92 (933)
T KOG1274|consen 57 -----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTIL----------------------------------- 92 (933)
T ss_pred -----ceeEEEee----cccceEEeeccceEEEeeCCCCCcccee-----------------------------------
Confidence 56777765 4559999999999999999887644222
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
...+-++.+++++-+|++++.| +|-.|++-++....+ ... +.+|.
T Consensus 93 --------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~-------lrgh~ 138 (933)
T KOG1274|consen 93 --------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKV-------LRGHD 138 (933)
T ss_pred --------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-hee-------ecccC
Confidence 2334588999999999999999 999999999984333 322 68999
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~ 346 (457)
++|.++.|+|.+ ++||+.+-||.|++||+..+.+. .++..-..... ..-...+..++|+|+ |.+++.+.
T Consensus 139 apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~v~k~n~-----~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 139 APVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTGVDKDNE-----FILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred CceeeeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhcccCCcccc-----ccccceeeeeeecCCCCeEEeecc
Confidence 999999999999 99999999999999999987654 22222000000 011356788999999 55556677
Q ss_pred cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
++.|++|+... ......+........ + ..+.|+|.|+|||+++-||.|.|||+++-+. ...
T Consensus 209 d~~Vkvy~r~~-we~~f~Lr~~~~ss~-~------------~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~ 269 (933)
T KOG1274|consen 209 DNTVKVYSRKG-WELQFKLRDKLSSSK-F------------SDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEF 269 (933)
T ss_pred CCeEEEEccCC-ceeheeecccccccc-e------------EEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccc
Confidence 89999999874 666666664332211 1 5799999999999999999999999997321 334
Q ss_pred CCcceeeeeccCCcceec
Q 012721 427 KNENRKPILQAAPRARRS 444 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~ 444 (457)
...|.+++|.|+.+....
T Consensus 270 ~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 270 KRAVCCEAWKPNANAITL 287 (933)
T ss_pred cceeEEEecCCCCCeeEE
Confidence 567899999999876543
No 105
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=6.4e-24 Score=200.72 Aligned_cols=211 Identities=11% Similarity=0.120 Sum_probs=150.8
Q ss_pred cccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|.+.|.+++|+|+ +++||+|+.||+|+||++.++... .......+..+.+|.
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~-------------------~~~i~~p~~~L~gH~------ 125 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES-------------------VKEIKDPQCILKGHK------ 125 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc-------------------ccccccceEEeecCC------
Confidence 459999999999996 789999999999999999754320 000112345678888
Q ss_pred ccccccCcEEEEEEEecCCCCE-EEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 108 KSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~-l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++| +|++.. +++++.|++|++||+.+++....+
T Consensus 126 ------~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i--------------------------------- 164 (568)
T PTZ00420 126 ------KKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQI--------------------------------- 164 (568)
T ss_pred ------CcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEEE---------------------------------
Confidence 88999999 566655 578999999999999887643221
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
.|...|.+++|+|+|.+|+++ .|+.|+|||++ .+..... +.+
T Consensus 165 -----------------------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R-sg~~i~t-------l~g 207 (568)
T PTZ00420 165 -----------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-KQEIASS-------FHI 207 (568)
T ss_pred -----------------------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-CCcEEEE-------Eec
Confidence 244579999999999999998 99999999999 4555543 567
Q ss_pred CCCceEE-----EEEecCCccEEEEEccCC----eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721 266 LTEVITS-----AEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 266 ~~~~i~~-----v~~~p~~~~~l~~~~~dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
|.+.+.+ ..|++++ .+|++++.|+ .|+|||++..... +..+.. ..+.+.+......
T Consensus 208 H~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~p---l~~~~l-----------d~~~~~L~p~~D~ 272 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSA---LVTMSI-----------DNASAPLIPHYDE 272 (568)
T ss_pred ccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCc---eEEEEe-----------cCCccceEEeeeC
Confidence 7765433 2345787 7888877664 7999999963211 122221 1122333333345
Q ss_pred cCCCeEEEEe-cCcEEEEeccC
Q 012721 337 NDGQHLLSRD-YMNLKLWDIRM 357 (457)
Q Consensus 337 ~~g~~l~s~~-~~~i~~wd~~~ 357 (457)
++|.++++|. |+.|++|++..
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccC
Confidence 5688888885 59999999974
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=188.94 Aligned_cols=249 Identities=15% Similarity=0.177 Sum_probs=189.4
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|...|.+++.|+||+|||+|+.|..|.||+.++.+. +..|.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh---------------------------v~~~~ghr-------- 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH---------------------------VKVFKGHR-------- 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch---------------------------hhcccccc--------
Confidence 6999999999999999999999999999999998874 35689999
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.+++| -.....+++++.|++|++|+++.......
T Consensus 245 ----~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s~vet------------------------------------- 281 (479)
T KOG0299|consen 245 ----GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLSYVET------------------------------------- 281 (479)
T ss_pred ----cceeeeee--ecCccceeeeecCCceEEEehhHhHHHHH-------------------------------------
Confidence 89999999 45556799999999999999987543322
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
+.+|...|..+.....++.+.+| .|+++++|++....+.+ +.++.+
T Consensus 282 ------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~ 328 (479)
T KOG0299|consen 282 ------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEG 328 (479)
T ss_pred ------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCC
Confidence 27999999999998888888888 99999999996333332 567888
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccc-cccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
.+-|++|-.+ ..+++|+.+|.|.+|++.+.+.+ .+... |...+.. .-..+..+|++++..|...++++|+.
T Consensus 329 sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~~~~--~~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 329 SIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred CeeeEEEecc--cceeeccCCceEEEeeecccCce----eEeeccccccCCc--cccccccceeeeEecccCceEEecCC
Confidence 9999999877 57999999999999999887644 11111 1111111 01223358999999999999999985
Q ss_pred -CcEEEEeccCCCC---ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE-eCCCcEEEEec
Q 012721 348 -MNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSH 413 (457)
Q Consensus 348 -~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i~iw~~ 413 (457)
|.|++|-+..+.+ ++..+. -.+.+ .+++|+++|++|++| +....+--|-.
T Consensus 401 ~G~vrLW~i~~g~r~i~~l~~ls-~~GfV---------------Nsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 401 SGCVRLWKIEDGLRAINLLYSLS-LVGFV---------------NSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred CCceEEEEecCCccccceeeecc-cccEE---------------EEEEEccCCCEEEEecccccccceeeE
Confidence 9999999976433 333333 22222 689999999966655 44445544543
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=5.1e-25 Score=191.07 Aligned_cols=262 Identities=16% Similarity=0.214 Sum_probs=195.1
Q ss_pred cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
.|+....+.|++.|+.+++.| .+..++++.+..+.|.|||.....-.......
T Consensus 114 ~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~-------------------------- 166 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGE-------------------------- 166 (422)
T ss_pred ceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCccccccc--------------------------
Confidence 334444567779999999986 56678888999999999998764322111000
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
..+-.. +.+|...-+.++|++. .-.|+++ .|+.|++||+......-.++. +.
T Consensus 167 ------------------------~~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~-p~ 220 (422)
T KOG0264|consen 167 ------------------------CRPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVD-PK 220 (422)
T ss_pred ------------------------CCCceE-EEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcccc-ce
Confidence 011111 2688888888999884 3456666 999999999985443211111 11
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
..+.+|...|..++|++....+|++++.|+.+.|||+|++.. +. .....+|.+.|++++|+|-+.
T Consensus 221 ~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-----~~----------~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 221 TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-----KP----------SHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-----CC----------cccccccCCceeEEEeCCCCC
Confidence 247899999999999998878999999999999999997311 11 112356889999999999654
Q ss_pred -eEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCC
Q 012721 341 -HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 341 -~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
.||+|+ |++|++||+|...+++..+.+|...+ +++.|||+ ...||+++.|+++.|||+..-.
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred ceEEeccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 556776 69999999998788999999999876 79999997 5688999999999999997532
Q ss_pred c-------------eeeEEecCCCcceeeeeccCCcceecccc
Q 012721 418 A-------------GGITVEAGKNENRKPILQAAPRARRSSLS 447 (457)
Q Consensus 418 ~-------------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 447 (457)
. .+++-.||.+.|....|+|.-|=...+++
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 2 23667899999999999999887665444
No 108
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.8e-24 Score=177.93 Aligned_cols=293 Identities=13% Similarity=0.155 Sum_probs=203.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccC
Q 012721 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (457)
Q Consensus 35 V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (457)
-.|+.|++.|.+||+|+.||.|.|||+.+... -..+.+|. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i---------------------------ar~lsaH~------------~ 66 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI---------------------------ARMLSAHV------------R 66 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch---------------------------hhhhhccc------------c
Confidence 78999999999999999999999999987653 35678898 8
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
+|.+++| |++|..|+++|.|..|++||+..|.+...+. +...|....|++.+.+.........
T Consensus 67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~------------- 129 (405)
T KOG1273|consen 67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEE------------- 129 (405)
T ss_pred ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecC-------------
Confidence 8999999 8999999999999999999999998655544 4556777888877654332221110
Q ss_pred ceEEEeccCccccccceeeccCC-CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 195 ATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
...+.+... ....++..-..+. .....+..|.+.|+++++| ..|.+.++|.. ..+++..+... ....|..
T Consensus 130 sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas~rit------s~~~IK~ 201 (405)
T KOG1273|consen 130 SPVVIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVASFRIT------SVQAIKQ 201 (405)
T ss_pred CcEEEEecC-CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeeeeeec------hheeeeE
Confidence 111111111 0001110000000 1112234688999999999 99999999998 45565543211 1256888
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec--cccceEEEEEccCCCeEEEEec--C
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE--IIASISDIKFANDGQHLLSRDY--M 348 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~--~ 348 (457)
+.++-.| ..|+.-+.|..||.|+++.--..... ..+.....+.. -...-.+++|+.+|.|+++++. .
T Consensus 202 I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~--------~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aH 272 (405)
T KOG1273|consen 202 IIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRD--------GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAH 272 (405)
T ss_pred EEEeccC-cEEEEecCCceEEEEehhhhcccCcc--------CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccce
Confidence 9999999 99999999999999998742110000 00000000000 0123467899999999998864 8
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.+++|.-.+ +.+++.+.+..+..- ..+.|+|-...|++- ..|.++||.....
T Consensus 273 aLYIWE~~~-GsLVKILhG~kgE~l--------------~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 273 ALYIWEKSI-GSLVKILHGTKGEEL--------------LDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eEEEEecCC-cceeeeecCCchhhe--------------eecccccceeeeeec-cCCceEEEEeecc
Confidence 999999976 899999988775421 478899999888887 6799999997654
No 109
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.1e-24 Score=184.53 Aligned_cols=291 Identities=18% Similarity=0.202 Sum_probs=199.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.+.|++|.|+|...+|++|+.||+++||.+++.... .+..+.-..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~---------- 257 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK---------- 257 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence 579999999999999999999999999999876542 223333223
Q ss_pred ccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
-+|.+..| .++|. .+++++....+..||+.+.+...+.......+-..- ...++.++.|
T Consensus 258 --fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e----------------~FeVShd~~f 317 (514)
T KOG2055|consen 258 --FPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME----------------RFEVSHDSNF 317 (514)
T ss_pred --Cccceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh----------------eeEecCCCCe
Confidence 57999999 57888 888999999999999998876655432221100000 0111122221
Q ss_pred ----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 191 ----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 191 ----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
...+.|.+....+ .+.+..+ .-.+.|..++|+.+++.|+++ .+|.|++||++ ...++..+.- .
T Consensus 318 ia~~G~~G~I~lLhakT---~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf~D-----~- 385 (514)
T KOG2055|consen 318 IAIAGNNGHIHLLHAKT---KELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRFVD-----D- 385 (514)
T ss_pred EEEcccCceEEeehhhh---hhhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEEee-----c-
Confidence 0122444443322 2222222 234678899999999998887 99999999999 4566655421 1
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
..-.-++++.++++ .+||+|+..|.|.|||..+.... ..|.+...+..-...|++++|+|++++||.+
T Consensus 386 G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s-----------~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 386 GSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS-----------TNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred CccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc-----------CCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 11234677888999 99999999999999997763211 1233333444556789999999999999977
Q ss_pred ec---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 346 DY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 346 ~~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+. ..+++-.+.+ ......+......+ .-|++++|||.+.+||.|.++|++.+|.+.
T Consensus 454 S~~~knalrLVHvPS-~TVFsNfP~~n~~v------------g~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 454 SRVKKNALRLVHVPS-CTVFSNFPTSNTKV------------GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhccccceEEEeccc-eeeeccCCCCCCcc------------cceEEEEecCCCceEEeecCCCceeeEeec
Confidence 63 8899988853 33334444333322 234899999999999999999999999874
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=6.3e-25 Score=181.37 Aligned_cols=255 Identities=20% Similarity=0.232 Sum_probs=195.0
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|.+.|+++.|+|...+|++|+.|++|++||...-... +.++-.+
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK---------------------------rA~K~~q------ 214 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK---------------------------RAFKVFQ------ 214 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH---------------------------HHHHHhh------
Confidence 4459999999999999999999999999999998644321 1111111
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
-..+|.++.| .|.|.+|+.|..-.++++||+++.++..... .
T Consensus 215 ----d~~~vrsiSf--HPsGefllvgTdHp~~rlYdv~T~Qcfvsan--P------------------------------ 256 (430)
T KOG0640|consen 215 ----DTEPVRSISF--HPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--P------------------------------ 256 (430)
T ss_pred ----ccceeeeEee--cCCCceEEEecCCCceeEEeccceeEeeecC--c------------------------------
Confidence 1157999999 5789999999999999999999876543211 0
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
-..|.+.|+++.+++.+++.+++ .||.|++||-- .++++.++ -..|
T Consensus 257 --------------------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~------~~AH 303 (430)
T KOG0640|consen 257 --------------------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTI------GNAH 303 (430)
T ss_pred --------------------------ccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHH------Hhhc
Confidence 05799999999999999999999 99999999977 67787764 2345
Q ss_pred C-CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 267 T-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 267 ~-~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
. ..|.+..|..+| +++++.+.|..+++|.+.++... ..+.+ . +. .+-..--+...|+....|++.-
T Consensus 304 ~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l----~~YtG-A-g~------tgrq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 304 GGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRML----KEYTG-A-GT------TGRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred CCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceE----EEEec-C-Cc------ccchhhhhhhhhcCccceEEcc
Confidence 4 568889999999 99999999999999999998654 33333 0 00 0001123445688888888877
Q ss_pred ec--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 346 DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 346 ~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
++ +.+.-||.++..+.-.--.+|.+.+ ..+.-||.+.-+++++.|.++++|--+
T Consensus 371 DEas~slcsWdaRtadr~~l~slgHn~a~---------------R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRVALLSLGHNGAV---------------RWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccCceeeccccchhhhhhcccCCCCCc---------------eEEEeCCCCCceeeecccceeeeeeec
Confidence 65 8899999987444433344677765 578889999999999999999999754
No 111
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-23 Score=192.65 Aligned_cols=336 Identities=14% Similarity=0.161 Sum_probs=219.2
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
+.+.|+++.=+|-=..+|.|..+|+|.|+++..++. +.+|+...
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------------l~sFk~d~--------- 244 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------------LMSFKQDW--------- 244 (910)
T ss_pred cccceeEeccCCcceEEEEeccCceEEEEEcccCcE---------------------------EEEEEccc---------
Confidence 678999999999889999999999999999998774 45555544
Q ss_pred cccCcEEEEEEEecCCCCE-EEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 111 EIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~-l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|++++| ..||.. +++++..|.+.+||++..+.......-....+....|.+....++....
T Consensus 245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~----------- 308 (910)
T KOG1539|consen 245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA----------- 308 (910)
T ss_pred ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC-----------
Confidence 88999999 677765 5556677999999999887766554333333444444433333333222
Q ss_pred cccccceEEEeccCccc-cccceeeccCCCCCeeEEEeC-CCCCEEEEe-CCCeEEEEEcCC------------------
Q 012721 190 WTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEI------------------ 248 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~------------------ 248 (457)
+..+++|-.+...- .+.++.- .||..+-.|+.|. .+|..+.++ .|++++.+++..
T Consensus 309 ---DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 309 ---DNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred ---CCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 23344443332111 1222222 5666666666665 455555555 555555444321
Q ss_pred ----------------------------------------------CcceeeeeecCCCcccCCCCceEEEEEecCCccE
Q 012721 249 ----------------------------------------------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (457)
Q Consensus 249 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 282 (457)
... ..-+.+++..++.-...+++++.++.| ++
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-~G~~~L~~~~~~~~~~~~~av~vs~CG-NF 462 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-SGRHVLDPKRFKKDDINATAVCVSFCG-NF 462 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-cccEEecCccccccCcceEEEEEeccC-ce
Confidence 111 000111112233344678999999999 99
Q ss_pred EEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCc
Q 012721 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (457)
Q Consensus 283 l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~ 361 (457)
.+.|+..|.|.+|++++|-.. ..+.. -..|..+|+.++...-++.+++++ +|.+++||... ..+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l 527 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVL 527 (910)
T ss_pred EEEeccCCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cce
Confidence 999999999999999997433 22211 146789999999999899899876 49999999864 332
Q ss_pred eeEeeeccccc-----------cccc-----------------ccc-CCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 362 VATFKIHEHLR-----------PKLC-----------------DLY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 362 ~~~~~~~~~~~-----------~~~~-----------------~~~-~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
+..+....... ...+ .+- ..+. +++++|||||++|++++.|++|++||
T Consensus 528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr---itd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR---ITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc---eeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 22222110000 0000 000 1122 27999999999999999999999999
Q ss_pred cCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+.++ ..+- .-.-..++..+.|+|+|.-.+.
T Consensus 605 lpt~-~lID-~~~vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 605 LPTG-TLID-GLLVDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred ccCc-ceee-eEecCCcceeeEECCCCCEEEE
Confidence 9999 3333 3345789999999999987776
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.5e-25 Score=180.90 Aligned_cols=273 Identities=16% Similarity=0.231 Sum_probs=205.0
Q ss_pred CCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecC----CccCCCccc-chhhhhhcc-------cccccC-CCccc
Q 012721 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG----GKNTPNQHI-SRSELEKQM-------DFTSTS-HPEYR 92 (457)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~----~~~~~~~~~-~~~~~~~~~-------~~~~~~-~~~~~ 92 (457)
....+|.+.|+|++|++.+.++++++.|++-.||...- .+..++.++ ...+.+..+ ...++- +..-.
T Consensus 184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 34556999999999999999999999999999998321 111111111 111111111 111111 11234
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
++..|.+|. +.|.+..|+ ..|+.+++++.|.+..+||+++++.+..+
T Consensus 264 Pl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~L------------------- 310 (481)
T KOG0300|consen 264 PLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNIL------------------- 310 (481)
T ss_pred eeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceeccc-------------------
Confidence 667788888 889999995 67889999999999999999999876542
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (457)
.+|....+.++-+|..++++++ .|-+.++||++..-+
T Consensus 311 ------------------------------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~ 348 (481)
T KOG0300|consen 311 ------------------------------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ 348 (481)
T ss_pred ------------------------------------------cCcchhccccccCCcceEEEEeccCceeEeccchhhcc
Confidence 6899999999999999999999 999999999994444
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
.+.+ +++|.+.|+++.|..+. .+++|+.|.+|++||+++..... .++.. .++++
T Consensus 349 sV~V-------FQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRspl---ATIRt--------------dS~~N 402 (481)
T KOG0300|consen 349 SVAV-------FQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPL---ATIRT--------------DSPAN 402 (481)
T ss_pred eeee-------ecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcc---eeeec--------------CCccc
Confidence 4444 79999999999999874 68999999999999999875332 22222 36789
Q ss_pred EEEEccCCCeEEEEec-CcEEEEeccCCCCceeE-----eeeccccccccccccCCCCccccceEEEcCCC--cEEEEEe
Q 012721 332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHFATGS 403 (457)
Q Consensus 332 ~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~s~~ 403 (457)
.++.+..+..|+.--| ..|++||+. +..+.. -++|...+ .+++|..+. .-|++++
T Consensus 403 Rvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~eehp~cnLftcG 465 (481)
T KOG0300|consen 403 RVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLEEHPACNLFTCG 465 (481)
T ss_pred eeEeecCCceEEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccccCccccccccc
Confidence 9999988889988776 999999996 443333 34565544 688997653 4688999
Q ss_pred CCCcEEEEecCCC
Q 012721 404 YSNLLRIFSHGVG 416 (457)
Q Consensus 404 ~dg~i~iw~~~~~ 416 (457)
.|..+.-|++...
T Consensus 466 FDR~v~gW~in~p 478 (481)
T KOG0300|consen 466 FDRMVAGWKINTP 478 (481)
T ss_pred ccceeeeeEeccc
Confidence 9999999998765
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.5e-25 Score=197.09 Aligned_cols=233 Identities=18% Similarity=0.228 Sum_probs=186.6
Q ss_pred CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (457)
Q Consensus 125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 204 (457)
+++++|++|+.||.|++|++........
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s---------------------------------------------------- 62 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPS---------------------------------------------------- 62 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcc----------------------------------------------------
Confidence 6777899999999999999875432110
Q ss_pred cccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-ceeeeeecCCCcccCCCCceEEEEE-ecCCcc
Q 012721 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF-HPIYCN 281 (457)
Q Consensus 205 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~-~p~~~~ 281 (457)
..++..+ +.|...|+.+....+++.|+++ .|-+|++|+..... -+.. .+..|.+.|.|+++ .++. .
T Consensus 63 --~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-------tir~H~DYVkcla~~ak~~-~ 131 (735)
T KOG0308|consen 63 --TPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-------TIRTHKDYVKCLAYIAKNN-E 131 (735)
T ss_pred --cchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-------hhhcccchheeeeecccCc-e
Confidence 0112222 6899999999999999999999 99999999998443 2332 36789999999999 6776 8
Q ss_pred EEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee-ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCC
Q 012721 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 359 (457)
Q Consensus 282 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~ 359 (457)
++|+|+.|+.|.+||+.++... ....+. ......+. ++..+|++++.++.|..|++|+- +.+++||.++ .
T Consensus 132 lvaSgGLD~~IflWDin~~~~~--l~~s~n-----~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~ 203 (735)
T KOG0308|consen 132 LVASGGLDRKIFLWDINTGTAT--LVASFN-----NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-C 203 (735)
T ss_pred eEEecCCCccEEEEEccCcchh--hhhhcc-----ccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-c
Confidence 9999999999999999987320 001111 11111222 77899999999999988888864 9999999997 7
Q ss_pred CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 439 (457)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 439 (457)
+.+..+++|...+ ..+..++||..+++++.||+|++||+.-+ +++.++..|...|+++..+|+.
T Consensus 204 ~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 204 KKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCc
Confidence 7778888999876 57889999999999999999999999988 8999999999999999999887
Q ss_pred cceec
Q 012721 440 RARRS 444 (457)
Q Consensus 440 ~~~~~ 444 (457)
....+
T Consensus 268 ~~vYs 272 (735)
T KOG0308|consen 268 THVYS 272 (735)
T ss_pred ceEEe
Confidence 77776
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.3e-25 Score=204.98 Aligned_cols=229 Identities=16% Similarity=0.245 Sum_probs=192.7
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.++.. -..+..+++|+.|..+.+|.+..-....
T Consensus 29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------------------------------ 64 (825)
T KOG0267|consen 29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPNAIT------------------------------------------ 64 (825)
T ss_pred hhhceeee--eccceeeccCCCceeeccccccCCchhh------------------------------------------
Confidence 66777776 3567789999999999999875432111
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
. +.+|..+|.++.|+++..+|++| .+|+|++||++ ....++ ++.+|...+.+
T Consensus 65 ------------------S-~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~s 117 (825)
T KOG0267|consen 65 ------------------S-LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITS 117 (825)
T ss_pred ------------------e-eeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcce
Confidence 1 16899999999999999999999 99999999999 555554 37899999999
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~ 351 (457)
+.|+|-+ .+.+.|+.|+.+++||++...+. .. +.+|...+..+.|+|+|+++++|++ ..++
T Consensus 118 v~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~----~~-------------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 118 VDFHPYG-EFFASGSTDTDLKIWDIRKKGCS----HT-------------YKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred eeeccce-EEeccccccccceehhhhccCce----ee-------------ecCCcceeEEEeecCCCceeeccCCcceee
Confidence 9999999 99999999999999999965432 22 2446778999999999999999876 9999
Q ss_pred EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce
Q 012721 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (457)
Q Consensus 352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~ 431 (457)
|||+.. ++.+..|..|+..+ ..+.|+|..-++++|+.|+++++||+++- ..+.........|.
T Consensus 180 i~d~~a-gk~~~ef~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 180 IWDLTA-GKLSKEFKSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVR 242 (825)
T ss_pred eecccc-cccccccccccccc---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCce
Confidence 999975 89999999998876 57889999999999999999999999977 45555666788999
Q ss_pred eeeeccCCcceeccccc
Q 012721 432 KPILQAAPRARRSSLSN 448 (457)
Q Consensus 432 ~~~~~p~~~~~~~~~~~ 448 (457)
+.+|+|++....+|..-
T Consensus 243 ~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeeecCCceeeecCchh
Confidence 99999999998887543
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.7e-24 Score=195.29 Aligned_cols=276 Identities=16% Similarity=0.246 Sum_probs=205.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.....+|+..++-..|+.++.. .++||........ ..+...+++..+-|
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn~~------- 87 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQNKF------- 87 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeeccccccee-------
Confidence 4577888899998888888865 6889887654421 11112222222111
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
-.+..|.|. .-+.++|++++..|.|.+||+...-.
T Consensus 88 --~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------------------------ 122 (839)
T KOG0269|consen 88 --YSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIR------------------------------------------ 122 (839)
T ss_pred --eehhhcccc-cchhhhheeecCCCcEEEEecCcccc------------------------------------------
Confidence 346778996 56678999999999999999976210
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+.+..+ ..|...++++.|++ ...+|++| .||.|++||++ ......+ +.+..+.
T Consensus 123 ---------------nk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t-------~~~nSES 178 (839)
T KOG0269|consen 123 ---------------NKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKST-------FRSNSES 178 (839)
T ss_pred ---------------chhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeee-ccccccc-------ccccchh
Confidence 0111122 78999999999988 55677888 99999999999 5555544 4567789
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
|..|.|+|..+..|+++.+.|.+++||+|....+ +. .+.+|.++|.++.|+|++.+||+|+ |+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------~~----------k~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------EK----------KLTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhH------HH----------HhhcccCceEEEeecCCCceeeecCCCc
Confidence 9999999987789999999999999999986432 11 2467899999999999999999987 59
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE-EEEEe--CCCcEEEEecCCCCceeeEEec
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~s~~--~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
.|+|||+.. .+.-.....+... +|..+.|-|+..+ ||+++ .|-.|+|||++...-+..++..
T Consensus 243 ~vkiWd~t~-~~~~~~~tInTia--------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 243 MVKIWDMTD-SRAKPKHTINTIA--------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred cEEEEeccC-CCccceeEEeecc--------------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 999999964 3332222222221 2368999998765 45443 4889999999988778899999
Q ss_pred CCCcceeeeeccC
Q 012721 426 GKNENRKPILQAA 438 (457)
Q Consensus 426 ~~~~v~~~~~~p~ 438 (457)
|...++.++|...
T Consensus 308 H~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 308 HTDSVTGIAWDSG 320 (839)
T ss_pred cCccccceeccCC
Confidence 9999999999763
No 116
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=2e-23 Score=181.22 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=207.3
Q ss_pred cCCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 31 h~~~V~~~~~s~~~--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
+.+.|++++|+|.. +++|+|+..|.|-+||+.+.+. .+.-+..+..|.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs------- 234 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS------- 234 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence 78999999999955 6899999999999999975443 344556778888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
++|.++.|.| .+...+++.|.||+|++-|++++....+...
T Consensus 235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~--------------------------------- 275 (498)
T KOG4328|consen 235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL--------------------------------- 275 (498)
T ss_pred -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc---------------------------------
Confidence 8999999976 4456899999999999999988654333211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
......+..+.|+.+...++.+ .=|...+||++..+..... +.-|.
T Consensus 276 --------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~ 322 (498)
T KOG4328|consen 276 --------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHK 322 (498)
T ss_pred --------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhh
Confidence 1123356678888777777777 6569999999976654433 45677
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
..|.+++++|..+.+||+++.|++.+|||++.-..... .++ ....|...|.+..|||.+-.|++.+
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~l-----------st~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFL-----------STLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cce-----------ecccccceeeeeEEcCCCCceEeecc
Confidence 89999999999989999999999999999987431100 011 1246788999999999876677655
Q ss_pred cCcEEEEecc---CCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721 347 YMNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 347 ~~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 423 (457)
|..|+|||.. ....++..+. |...-. .....+.+.|.|+..+|++|-.-..|-|+|-..+ +....+
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~el 458 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCEL 458 (498)
T ss_pred CCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeeec
Confidence 6999999983 1133444443 332211 1112257899999999999999999999998766 322222
Q ss_pred e-cCCCccee-eeeccCCcceeccc
Q 012721 424 E-AGKNENRK-PILQAAPRARRSSL 446 (457)
Q Consensus 424 ~-~~~~~v~~-~~~~p~~~~~~~~~ 446 (457)
- .....|.+ ..|||-+--.++|.
T Consensus 459 ~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 459 HDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred cCccccccccceeecccccceeccC
Confidence 1 11223333 37888877555543
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.5e-23 Score=189.37 Aligned_cols=265 Identities=14% Similarity=0.194 Sum_probs=212.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|..+++.+ +..++++++||++++|+-..++-. ....+.+|.
T Consensus 11 ~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l-------------------------~~~~~~~~~------- 57 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYL-------------------------ETHAFEGPK------- 57 (745)
T ss_pred ccCccchheeEecC-CeEEeecCCCCceeeeeccCcccc-------------------------cceecccCc-------
Confidence 35899999998875 458899999999999997655432 334566666
Q ss_pred cccccCcEEE-EEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 109 SLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 109 ~~~~~~~V~~-v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+-|.. ++|.+ .++-.+++|+.|.+|.+|.........+
T Consensus 58 -----g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~----------------------------------- 96 (745)
T KOG0301|consen 58 -----GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYT----------------------------------- 96 (745)
T ss_pred -----ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhh-----------------------------------
Confidence 56666 88864 4555799999999999999877644322
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
+.+|...|.|++...++. +++| .|.++++|-.. ++... +++|
T Consensus 97 --------------------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~-------l~gH 139 (745)
T KOG0301|consen 97 --------------------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYS-------LQGH 139 (745)
T ss_pred --------------------------hhccccceeeeecCCcCc-eEecccccceEEecch---hhhcc-------cCCc
Confidence 279999999999887777 8888 99999999765 33322 7899
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...|+++..-|++ .+++|+.|.+|++|.-.+ .. ++ |.+|..-|..+++-+++.++-++.
T Consensus 140 ~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~l----~t-------------f~gHtD~VRgL~vl~~~~flScsN 198 (745)
T KOG0301|consen 140 TASVWAVASLPEN--TYVTGSADKTIKLWKGGT--LL----KT-------------FSGHTDCVRGLAVLDDSHFLSCSN 198 (745)
T ss_pred chheeeeeecCCC--cEEeccCcceeeeccCCc--hh----hh-------------hccchhheeeeEEecCCCeEeecC
Confidence 9999999999985 889999999999997532 21 33 456889999999999988888888
Q ss_pred cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
||.|++|++. +..+..+.+|.+.+ ++++...++..++++++|++++||+.. .+.+.+.--
T Consensus 199 Dg~Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lP 258 (745)
T KOG0301|consen 199 DGSIRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLP 258 (745)
T ss_pred CceEEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecC
Confidence 8999999994 88999999999876 688888888999999999999999987 466766655
Q ss_pred CCcceeeeeccCCcceecc
Q 012721 427 KNENRKPILQAAPRARRSS 445 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~~ 445 (457)
.-.++++.+-+++.....|
T Consensus 259 ttsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred ccceEEEEEeeCCCEEEec
Confidence 5578888888777776663
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=183.55 Aligned_cols=272 Identities=14% Similarity=0.189 Sum_probs=213.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
..+|.||||+.+.+.||.+-.+|.|-||++... +-+...+.++.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~d--------- 69 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPED--------- 69 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCCC---------
Confidence 679999999999999999999999999998753 335566777663
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..|.+++|+ ++..|.+.+.+|.|.-||+.+++.....
T Consensus 70 --rsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~-------------------------------------- 106 (691)
T KOG2048|consen 70 --RSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNI-------------------------------------- 106 (691)
T ss_pred --CceeeEEEc---cCCeEEeecCCceEEEEecccCceeEEe--------------------------------------
Confidence 789999993 5668999999999999999998765432
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
....+.|++++.+|.+..++.| +||.++.++.. .+..... ..+....+.+
T Consensus 107 -----------------------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~-----r~l~rq~sRv 157 (691)
T KOG2048|consen 107 -----------------------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYK-----RSLMRQKSRV 157 (691)
T ss_pred -----------------------cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEE-----eecccccceE
Confidence 3455689999999999999998 99988888776 3332211 1244456899
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc-cccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~ 348 (457)
.+++|+|++ ..|+.|+.||.|++||..++........ +... . ..-..-|+++.|-.++ .|++|+. |
T Consensus 158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l-~---------k~~~~iVWSv~~Lrd~-tI~sgDS~G 225 (691)
T KOG2048|consen 158 LSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL-S---------KREPTIVWSVLFLRDS-TIASGDSAG 225 (691)
T ss_pred EEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc-c---------cCCceEEEEEEEeecC-cEEEecCCc
Confidence 999999999 8899999999999999998865421000 1111 0 0012458888888655 7788876 9
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc---eeeEEec
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEA 425 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~ 425 (457)
+|.+||... +.++..+..|..-+ .+++..+++.++++++.|+.|..+...+.+. .......
T Consensus 226 ~V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 226 TVTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred eEEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 999999986 89999998888754 7899999999999999999999999887744 3334568
Q ss_pred CCCcceeeeeccC
Q 012721 426 GKNENRKPILQAA 438 (457)
Q Consensus 426 ~~~~v~~~~~~p~ 438 (457)
|...+++++..++
T Consensus 290 h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN 302 (691)
T ss_pred Ccccceeeeeecc
Confidence 8889999988777
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=176.10 Aligned_cols=267 Identities=16% Similarity=0.234 Sum_probs=186.4
Q ss_pred cccCCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 29 LQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
+.|.+.+..+.-++-+ .+.|+=+..|.|+||++...-. .+...+..++ ..+.+.+.++.+|.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---------~l~~~~~~~~--~s~~~Pl~t~~ghk----- 211 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---------ALSEPGLEVK--DSEFRPLFTFNGHK----- 211 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---------hhcCcccccc--ccccCceEEecccC-----
Confidence 4578888888888754 5666678999999999864321 1111111111 12456777888888
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
+.=..++|+|...| .|++|..-+.|++|...+|....-.
T Consensus 212 -------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~--------------------------------- 250 (440)
T KOG0302|consen 212 -------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQ--------------------------------- 250 (440)
T ss_pred -------ccceeeeccccccc-ccccCccccceEeeeeccCceeecC---------------------------------
Confidence 66789999764455 6888988899999999887654210
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
. -+.+|+..|-.++|+|. ...|++| .|++|+|||++...+...+. .+
T Consensus 251 ---------------------~----Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~k 299 (440)
T KOG0302|consen 251 ---------------------R----PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------TK 299 (440)
T ss_pred ---------------------c----cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------ee
Confidence 0 01579999999999995 4567778 99999999999543333332 47
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--eE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HL 342 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l 342 (457)
.|...|..|+|+..- .+||+|+.||+++|||+|+-+. ..+...|.-|..+|+++.|+|... +.
T Consensus 300 Ah~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~--------------~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 300 AHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS--------------GQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred ccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC--------------CCcceeEEeccCCeeEEEeccccCceEE
Confidence 899999999999998 6999999999999999998432 133445677899999999999643 33
Q ss_pred EEEecCcEEEEeccCCCC---------------ceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCC
Q 012721 343 LSRDYMNLKLWDIRMDST---------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSN 406 (457)
Q Consensus 343 ~s~~~~~i~~wd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg 406 (457)
++|.|..|.+||+..... +.+.+-.|.+.. .+-.+.|++. ..+|++.+-||
T Consensus 365 asg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred eccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------HhhhheeccCCCCeEEEecccc
Confidence 455679999999964211 011122232211 1247899986 45788888888
Q ss_pred cEEEEe
Q 012721 407 LLRIFS 412 (457)
Q Consensus 407 ~i~iw~ 412 (457)
+.||.
T Consensus 432 -fnVfk 436 (440)
T KOG0302|consen 432 -FNVFK 436 (440)
T ss_pred -eeEEE
Confidence 44553
No 120
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.4e-22 Score=166.99 Aligned_cols=230 Identities=18% Similarity=0.217 Sum_probs=181.1
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+.|+++.| +.+|.++++++.|.++++||..+++....+.
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------------- 53 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------------- 53 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------------
Confidence 78999999 7999999999999999999999998766543
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
.+.-.+..++|.. +...+.+. .|.+|+..++. ..+.++. +.||...|
T Consensus 54 ----------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRY-------F~GH~~~V 103 (311)
T KOG1446|consen 54 ----------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRY-------FPGHKKRV 103 (311)
T ss_pred ----------------------cccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEE-------cCCCCceE
Confidence 2333566677744 44444444 69999999999 6777776 79999999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
.+++.+|-+ ..+++++.|++|++||++..+.. ..+.. ..-..++|+|+|-++|++.. +.
T Consensus 104 ~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 104 NSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCe
Confidence 999999999 99999999999999999976533 22222 23345799999999999987 69
Q ss_pred EEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721 350 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 350 i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
|++||+++- +.+..++......- . ....+.|||||++|+.+...+.+++.|.-+| ....+++++..
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~---------~---ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~ 230 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDE---------A---EWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPN 230 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCc---------c---ceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccC
Confidence 999999864 45555555442111 0 1268999999999999999999999999999 67888887765
Q ss_pred cc---eeeeeccCCcceecccc
Q 012721 429 EN---RKPILQAAPRARRSSLS 447 (457)
Q Consensus 429 ~v---~~~~~~p~~~~~~~~~~ 447 (457)
.- -...|+||+....+|-.
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred CCCcceeEEECCCCcEEEEecC
Confidence 54 56789999999988544
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=188.11 Aligned_cols=286 Identities=19% Similarity=0.247 Sum_probs=202.1
Q ss_pred EEEEECC---CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 36 SAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 36 ~~~~~s~---~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
.+..|++ ...+||.+.+||.|.++|.....- .++...+..+..|.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~----------- 100 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK----------- 100 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc-----------
Confidence 3477776 346899999999999999875542 12333345667787
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..|.++.|. |....|++++.|.++++||+.++++....
T Consensus 101 -nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~--------------------------------------- 138 (720)
T KOG0321|consen 101 -NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR--------------------------------------- 138 (720)
T ss_pred -ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce---------------------------------------
Confidence 889999995 56668999999999999999987654321
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcce------eeee---ec---
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC------FNIV---DM--- 258 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~------~~~~---~~--- 258 (457)
+..+|...|.+++|.|. ...|++| .||.|.|||++..+.. .++. ..
T Consensus 139 --------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 139 --------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred --------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 11689999999999994 5567778 9999999999853310 0000 00
Q ss_pred --CC-----CcccCCCCceEE---EEEecCCccEEEEEcc-CCeEEEEEccCCeeeccccccccccccccCcccceecc-
Q 012721 259 --KP-----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI- 326 (457)
Q Consensus 259 --~~-----~~~~~~~~~i~~---v~~~p~~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h- 326 (457)
++ ...+.+...|.+ +.+..|. ..||+++. |+.|+|||++..... +.. .+.....+.-|
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~------~r~---ep~~~~~~~t~s 268 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTA------YRQ---EPRGSDKYPTHS 268 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccc------ccc---CCCcccCccCcc
Confidence 00 122345555555 5566676 78888887 999999999986432 111 11111112222
Q ss_pred --ccceEEEEEccCCCeEEE-EecCcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 327 --IASISDIKFANDGQHLLS-RDYMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 327 --~~~v~~~~~s~~g~~l~s-~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
.-.+.++.....|.+|.+ +.|+.|++|++... ..++..+.++.... ++ ..-..+||+.+|++|
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f~--vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------FY--VKSELSPDDCSLLSG 335 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------ee--eeeecCCCCceEecc
Confidence 346778888888888764 67899999999753 23455555544321 11 244678999999999
Q ss_pred eCCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721 403 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 403 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
+.|...++|.+.+.+.....+.+|.-.|.+|.|.|.
T Consensus 336 Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999999999998889999999999999999875
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=4.7e-23 Score=187.49 Aligned_cols=358 Identities=13% Similarity=0.099 Sum_probs=234.7
Q ss_pred CccccCCceEEEEECCCCC---EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccc-cCCCcccee--------
Q 012721 27 EELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS-TSHPEYRYK-------- 94 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------- 94 (457)
..-+|++.|.+++|+..+. +||+++.|..||||.+.-.... ...++...... +.-|.+...
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~-------~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE-------DSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc-------cccccccccccccCCceeeeeeeEEEEEe
Confidence 3456999999999988554 8899999999999998644321 00011110000 011111111
Q ss_pred --eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccc--ceeEEEeecCCC----ceeeeee
Q 012721 95 --TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFP----FVSSENT 166 (457)
Q Consensus 95 --~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~--~~~~~~~~~~~~----~~~~~~~ 166 (457)
+.+.||+ +.|.++.| +|.+..|++++.|.++.+|.-.+. -.........-. .....-|
T Consensus 259 ~eall~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 259 FEALLMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred hhhhhcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 2234676 89999999 678889999999999999986654 333332221110 0011111
Q ss_pred ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (457)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd 245 (457)
++.. ..++..+ -.+..++|.............. .+|...|..++|+|.|++|++. .|.+-++|-
T Consensus 325 ~~n~-----------~~ii~~g---~~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 325 SPNS-----------NVIIAHG---RTGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cCCC-----------CEEEEec---ccCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeec
Confidence 1111 1111111 1335677773333333333333 8999999999999999999998 999999987
Q ss_pred cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCe----------ee------------
Q 012721 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA----------LC------------ 303 (457)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~----------~~------------ 303 (457)
.-..++....+ ..-+-|....+|++|-+.. ..+++|.....+|+|+....- ..
T Consensus 390 ~wg~q~~wHEi----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 390 RWGRQQEWHEI----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred ccccccceeee----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 65222222222 1235688889999998864 789999999999999876420 00
Q ss_pred ----cccccccc-----c-c----------------cccc-----------CcccceeccccceEEEEEccCCCeEEEEe
Q 012721 304 ----DHSARILR-----D-A----------------AESH-----------GSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 304 ----~~~~~~~~-----~-~----------------~~~~-----------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
......+. + + ...| .....+.||...|++++.+|+|+++|+++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaC 544 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASAC 544 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehh
Confidence 00000010 0 0 0000 01145679999999999999999999874
Q ss_pred -----c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCce-
Q 012721 347 -----Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG- 419 (457)
Q Consensus 347 -----~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~- 419 (457)
. -.|++|+... -.....+.+|+-.+ +.++|||||++|++.+.|+++.+|+.......
T Consensus 545 KS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 545 KSSLKEHAVIRLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred hhCCccceEEEEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchh
Confidence 2 6799999875 55666888998765 79999999999999999999999998765333
Q ss_pred --eeEEecCCCcceeeeeccCCcc
Q 012721 420 --GITVEAGKNENRKPILQAAPRA 441 (457)
Q Consensus 420 --~~~~~~~~~~v~~~~~~p~~~~ 441 (457)
....+.|..-|....|+|+..-
T Consensus 609 ~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 609 FRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred hhhccccccceEEEEcccCcccce
Confidence 3337899999999999999874
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2e-23 Score=183.11 Aligned_cols=277 Identities=14% Similarity=0.191 Sum_probs=213.4
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
..+.|.+-|.++++|...+++.||+. |.|+|||+...... ..+..|..-+.
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdcl~r---- 464 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDCLNR---- 464 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------CccccccccCc----
Confidence 34669999999999999999999986 56999999765421 12333333221
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
+.-|.++.. .+||..|++|++-.++.|||+..........
T Consensus 465 ------dnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikae-------------------------------- 504 (705)
T KOG0639|consen 465 ------DNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-------------------------------- 504 (705)
T ss_pred ------ccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhh--------------------------------
Confidence 255777887 6899999999999999999997653221100
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
+....-.++.++.+||.+..++| .||.|.|||+. ....++. +++
T Consensus 505 ---------------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------fqG 549 (705)
T KOG0639|consen 505 ---------------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQG 549 (705)
T ss_pred ---------------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------ccC
Confidence 02223357789999999999999 99999999999 5555543 899
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
|.+.+.||..+++| ..|-+|+.|++||.||++++... ..|. ..+.|.++.++|++.+|+.|
T Consensus 550 htDGascIdis~dG-tklWTGGlDntvRcWDlregrql-------qqhd-----------F~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 550 HTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQL-------QQHD-----------FSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred CCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhh-------hhhh-----------hhhhheecccCCCccceeee
Confidence 99999999999999 99999999999999999998533 2211 13579999999999999999
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
-. +.+.+.... +.....+..|+..+ .++.|.+-|+++++.+.|+.+..|...-| ..++ -.
T Consensus 611 Mens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyG-asiF-qs 671 (705)
T KOG0639|consen 611 MENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIF-QS 671 (705)
T ss_pred cccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccc-ccee-ec
Confidence 76 888777764 45556666677654 79999999999999999999999999888 3333 23
Q ss_pred cCCCcceeeeeccCCcceecc
Q 012721 425 AGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~~~~ 445 (457)
...++|.+...+-+..-...|
T Consensus 672 kE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 672 KESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred cccCcceeeeeccCceEEEec
Confidence 457788888888887776664
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.4e-21 Score=175.75 Aligned_cols=293 Identities=10% Similarity=0.086 Sum_probs=189.5
Q ss_pred CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEe
Q 012721 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (457)
Q Consensus 44 ~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (457)
++++++++.|+.|++||+.+++. +..+.++. .+.+++|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~-- 38 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITL-- 38 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEE--
Confidence 35788999999999999887653 34444443 3567899
Q ss_pred cCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721 124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (457)
Q Consensus 124 s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 202 (457)
++++..+ ++++.++.|++||..+++....+.. ...+..+.+++....++... ..++.+++||+.
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~-------------~~~~~l~~~d~~ 103 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIAN-------------EDDNLVTVIDIE 103 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEc-------------CCCCeEEEEECC
Confidence 6888876 5667889999999998876544322 22233344433222221111 123579999987
Q ss_pred CccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (457)
Q Consensus 203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 280 (457)
.. +.+..+ .+...+.+++|+|++.+++++ .+ ..+.+||.+ ........ . ....+.+++|+|++
T Consensus 104 ~~---~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~-------~-~~~~~~~~~~s~dg- 168 (300)
T TIGR03866 104 TR---KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV-------L-VDQRPRFAEFTADG- 168 (300)
T ss_pred CC---eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE-------E-cCCCccEEEECCCC-
Confidence 53 233332 223346789999999999988 55 467788987 44433321 1 12345678999999
Q ss_pred cEEE-EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE--ecCcEEEEeccC
Q 012721 281 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKLWDIRM 357 (457)
Q Consensus 281 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~--~~~~i~~wd~~~ 357 (457)
.+|+ ++..++.|++||+++++.. ..+..+.... .........++|+|++++++.+ +++.+.+||+++
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 7664 5557999999999987543 1111100000 0001123468899999986543 347899999975
Q ss_pred CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 436 (457)
++....+... ..+ .+++|+|+|++|++++ .++.|.+||+.++ +.+..++.... .+.++++
T Consensus 239 -~~~~~~~~~~-~~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~-~~~~~~~ 299 (300)
T TIGR03866 239 -YEVLDYLLVG-QRV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIKVGRL-PWGVVVR 299 (300)
T ss_pred -CcEEEEEEeC-CCc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEEcccc-cceeEeC
Confidence 5655444322 222 5899999999998864 6899999999998 66666766544 4888877
Q ss_pred c
Q 012721 437 A 437 (457)
Q Consensus 437 p 437 (457)
|
T Consensus 300 ~ 300 (300)
T TIGR03866 300 P 300 (300)
T ss_pred C
Confidence 5
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=7.7e-22 Score=183.27 Aligned_cols=325 Identities=16% Similarity=0.208 Sum_probs=224.9
Q ss_pred CCccccC-CceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721 26 DEELQDV-DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (457)
Q Consensus 26 ~~~~~h~-~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (457)
...+.|. +.|++++|..||+ +||+|+..|.+.+||++..+.. ......|.
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--------------------------~v~~nah~-- 288 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--------------------------NVTRNAHY-- 288 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--------------------------eeeecccc--
Confidence 3445675 9999999999995 5677888899999999987642 12334676
Q ss_pred ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce----eEEEeecCCCceeeeeeccccccccccCCC
Q 012721 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (457)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (457)
++|....|+ +....+++++.|+.+++|=.+++.. .+. ......+..++.|...++..+-+...
T Consensus 289 ----------~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 289 ----------GSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred ----------CCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheee-ccCCCCCchheeeeccCcEEEEeccc
Confidence 889999996 5566899999999999997664322 222 22223334455555444433322220
Q ss_pred -C---------------------------------------Cce-eccCC----ccc-------cccceEEEeccCcccc
Q 012721 180 -P---------------------------------------SFA-HGYHL----EWT-------ENMATKIANVGNSVHA 207 (457)
Q Consensus 180 -~---------------------------------------~~~-~~~~~----~~~-------~~~~i~~~~~~~~~~~ 207 (457)
. +.. +.... .|+ .....+.|+......+
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G 435 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG 435 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence 0 000 00000 011 1115667888765554
Q ss_pred ccceee--ccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721 208 RCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (457)
Q Consensus 208 ~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 284 (457)
+..-.. ++.....+++++.++.|++.+.| ..|.|-+|++. .+.....+. .-..|..+|+.++....+ +.++
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ-SGi~r~sf~----~~~ah~~~V~gla~D~~n-~~~v 509 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ-SGIHRKSFG----DSPAHKGEVTGLAVDGTN-RLLV 509 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc-cCeeecccc----cCccccCceeEEEecCCC-ceEE
Confidence 332111 12245678899999999999999 99999999999 565544321 125799999999999888 9999
Q ss_pred EEccCCeEEEEEccCCeeecc--------------------------ccccccccccccCcccceeccccceEEEEEccC
Q 012721 285 YSSSRGFVRLVDMRQSALCDH--------------------------SARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 285 ~~~~dg~i~lwd~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 338 (457)
+++.+|.+++||..+..+... .+.+++. ........|.+|...|++++||||
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~--~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV--VTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc--hhhhhhHHhhccccceeeeEeCCC
Confidence 999999999999988653210 0001110 011123557899999999999999
Q ss_pred CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-CcEEEEecCCC
Q 012721 339 GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHGVG 416 (457)
Q Consensus 339 g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~iw~~~~~ 416 (457)
|++|++++ |++|++||+-+ +.++..+...... +++.|+|+|.+||+...| .-|++|.-++.
T Consensus 588 grWlisasmD~tIr~wDlpt-~~lID~~~vd~~~----------------~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPT-GTLIDGLLVDSPC----------------TSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred CcEEEEeecCCcEEEEeccC-cceeeeEecCCcc----------------eeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 99999987 59999999986 7888777655443 689999999999999998 67999987765
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=191.74 Aligned_cols=255 Identities=15% Similarity=0.186 Sum_probs=200.8
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
....-.-.++|++.||+|++||+|..-|+++||++...+ +...+..|+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~---------------------------~~~~~eAHe----- 501 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE---------------------------YTCFMEAHE----- 501 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhh---------------------------hhhheeccc-----
Confidence 333456789999999999999999999999999998665 345678888
Q ss_pred cccccccCcEEEEEEEecCC--CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 107 LKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..|.|+.|+ .|. .++|++++.|+.|.++|+.....
T Consensus 502 -------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny~----------------------------------- 538 (1080)
T KOG1408|consen 502 -------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNYD----------------------------------- 538 (1080)
T ss_pred -------ceeEEEeec-CchhhhHhhhhccCCceEEEEecccccc-----------------------------------
Confidence 779999995 233 56899999999999999865421
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
.++++ .+|...|+++.|.-+| ..++++ .|+.|.+--.. ......++ +. .
T Consensus 539 ------------------------l~qtl-d~HSssITsvKFa~~gln~~MiscGADksimFr~~q-k~~~g~~f-~r-~ 590 (1080)
T KOG1408|consen 539 ------------------------LVQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ-KASSGRLF-PR-H 590 (1080)
T ss_pred ------------------------hhhhh-cccccceeEEEEeecCCceEEEeccCchhhheehhc-cccCceec-cc-c
Confidence 11122 7899999999997666 566776 88887654332 11111111 00 0
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
+-.-....++.++..|.. +++++++.|..|+|||+.+++.. +.|++ -.+|.+..-.+...|.|-|
T Consensus 591 t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~----k~FKg----------s~~~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQV----KSFKG----------SRDHEGDLIKVILDPSGIY 655 (1080)
T ss_pred ccccccceEEEeeeCCCc-ceEEEEecccceEEEecccccee----eeecc----------cccCCCceEEEEECCCccE
Confidence 011123568999999998 99999999999999999999766 77776 2456678889999999999
Q ss_pred EEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 342 LLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 342 l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
||+. +|.++.++|..+ ++++.++.+|...+ +.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 656 ~atScsdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 656 LATSCSDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeecCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceEEEEECch
Confidence 9975 679999999986 99999999999876 7999999999999999999999999865
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.7e-23 Score=169.39 Aligned_cols=297 Identities=14% Similarity=0.170 Sum_probs=199.6
Q ss_pred eeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeE--EEeec-CCCceeeeeecccc
Q 012721 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMD-HFPFVSSENTLLAE 170 (457)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~ 170 (457)
+..|++|. +.|++++| +.||++|++++.|++|++|++++-.... .+..+ .-...+.+.|.++-
T Consensus 79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 44677888 88999999 7999999999999999999987632211 11100 00123444444433
Q ss_pred ccccccCCCCCceeccCCccccccceEEEeccCccccccc--------eeeccCCCCCeeEEEeCCCCCEEEEe-CCCeE
Q 012721 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQ--------KVYPHAHDFNINSISNNSDCETFVSA-DDLRI 241 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i 241 (457)
..++.... .+..+++|.+.....+... ..+..-|...+..+-...++.+|+++ .|..|
T Consensus 145 ~s~vv~~~-------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i 211 (420)
T KOG2096|consen 145 KSVVVSVK-------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI 211 (420)
T ss_pred ceEEEEEc-------------cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcE
Confidence 33222211 2335555554432222110 11224566677777788889999999 99999
Q ss_pred EEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee--eccccccccccccccCc
Q 012721 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGS 319 (457)
Q Consensus 242 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~ 319 (457)
.+|+++ ++.+..++.+ ...-+..+.+|+| +++++++..--|++|.+--++. .....+.|
T Consensus 212 ~lw~lk--Gq~L~~idtn-------q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf--------- 272 (420)
T KOG2096|consen 212 CLWDLK--GQLLQSIDTN-------QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF--------- 272 (420)
T ss_pred EEEecC--Cceeeeeccc-------cccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhh---------
Confidence 999998 6777665433 2344567899999 9999999999999998643211 11111222
Q ss_pred ccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCC------CCceeEeee--ccccccccccccCCCCccccceE
Q 012721 320 KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD------STPVATFKI--HEHLRPKLCDLYNNDSIFDKFEC 390 (457)
Q Consensus 320 ~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~ 390 (457)
.+.+|.+.|..++|+++.+.+++.+ ||++++||++-. .+.++.... |..... -..+
T Consensus 273 --~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~-------------p~RL 337 (420)
T KOG2096|consen 273 --SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE-------------PVRL 337 (420)
T ss_pred --eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC-------------ceEE
Confidence 3589999999999999999999987 599999998531 122322211 111000 0379
Q ss_pred EEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccccccccc
Q 012721 391 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (457)
Q Consensus 391 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 455 (457)
+++|.|+.||.+. ...++++..++|+.....-..|...+.+++|+|+|...++ ...|..|.
T Consensus 338 ~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at---cGdr~vrv 398 (420)
T KOG2096|consen 338 ELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT---CGDRYVRV 398 (420)
T ss_pred EeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee---ecceeeee
Confidence 9999999887654 4679999999997777777899999999999999987765 44555543
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.2e-23 Score=177.87 Aligned_cols=237 Identities=18% Similarity=0.280 Sum_probs=179.5
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.. +..+.+|-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---------------------------L~v~~aHY--------- 123 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---------------------------LNVLSAHY--------- 123 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------------------HHHHHhhc---------
Confidence 368899999999999999998999999999999984 45678888
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..|+++.| +.||.+|++|+.||.|.+|.+..--
T Consensus 124 ---Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv------------------------------------------ 156 (476)
T KOG0646|consen 124 ---QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLV------------------------------------------ 156 (476)
T ss_pred ---cceeEEEE--eCCCcEEEecCCCccEEEEEEEeec------------------------------------------
Confidence 88999999 7999999999999999999975421
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
+........++..+ .+|.-+|+.+...+. ..+++++ .|.++++||+. .+..+..+. ..
T Consensus 157 ---------~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti~--------fp 217 (476)
T KOG0646|consen 157 ---------SADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTIT--------FP 217 (476)
T ss_pred ---------ccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEEe--------cC
Confidence 00000122444444 789999999988653 3567777 99999999999 555554432 33
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEEE
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR 345 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~ 345 (457)
..+.+++.+|-+ ..+.+|+.+|.|.+.++.+-......+. .+...........+.+|.. .|+|++++-||.+|++|
T Consensus 218 ~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 218 SSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred CcceeEEEcccc-cEEEecCCcceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 779999999998 9999999999999988865431111011 1111223333456778888 99999999999999999
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccc
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLR 372 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~ 372 (457)
+. |.|++||+.+ .++++++....+++
T Consensus 296 d~dg~VcvWdi~S-~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 296 DEDGKVCVWDIYS-KQCIRTLQTSKGPV 322 (476)
T ss_pred CCCCCEEEEecch-HHHHHHHhhhcccc
Confidence 85 9999999975 77777766444443
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=5.6e-24 Score=179.33 Aligned_cols=274 Identities=18% Similarity=0.245 Sum_probs=190.0
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (457)
++..|.||. ++|.+++=+ |.. ..+++|+.||.|++||+....+...+..+.. .|..+.+.. .
T Consensus 58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~~--~ 120 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVTQ--T 120 (433)
T ss_pred chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEecc--c
Confidence 566788898 899999985 443 5799999999999999988766555443221 122222221 1
Q ss_pred cccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcc
Q 012721 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (457)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~ 251 (457)
..+.. ..+..++.|.++.. +++++ .-...+..+.-+..+..+++| ...|.|||.. ...
T Consensus 121 ~~~tv--------------gdDKtvK~wk~~~~----p~~ti--lg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~-R~~ 178 (433)
T KOG0268|consen 121 SFFTV--------------GDDKTVKQWKIDGP----PLHTI--LGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQ-RDN 178 (433)
T ss_pred ceEEe--------------cCCcceeeeeccCC----cceee--ecccccccccccccccccccc-Cceeeecccc-cCC
Confidence 11111 12447777777652 33333 112334455555445555555 2357788876 344
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
+++. +.=....|.++.|+|....+|+++..|+.|.|||++++..+.+.+.. ..-+
T Consensus 179 Pv~s-------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------------mRTN 233 (433)
T KOG0268|consen 179 PVSS-------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------------MRTN 233 (433)
T ss_pred ccce-------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------------cccc
Confidence 4433 23344678999999988778999999999999999998655322222 3457
Q ss_pred EEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721 332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 332 ~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i 410 (457)
.++|+|.+-.+++|++ ..++.||++....++..+.+|...+ ++++|||.|+-+++||.|.+|+|
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEE
Confidence 8999997766667764 9999999987778888888888765 79999999999999999999999
Q ss_pred EecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 411 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
|.++.+.....-...-...|.+|.|+.|..-..+|
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SG 333 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISG 333 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEec
Confidence 99998743333333345678999999998877773
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.9e-23 Score=178.34 Aligned_cols=236 Identities=15% Similarity=0.093 Sum_probs=183.3
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
++|.+++- +++|.+++.|+..|.|++|.+.+|.+..++
T Consensus 82 g~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v~---------------------------------------- 119 (476)
T KOG0646|consen 82 GPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNVL---------------------------------------- 119 (476)
T ss_pred cceeeeec--CCCceEEEeecccCcEEEEEeccccHHHHH----------------------------------------
Confidence 77999988 789988888889999999999999765431
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC-CcccCCCCceE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVIT 271 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~ 271 (457)
.+|-..|+|+.|+.||.+|++| .||.|.+|.+..--........+| ..+..|.-+|+
T Consensus 120 ---------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT 178 (476)
T KOG0646|consen 120 ---------------------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT 178 (476)
T ss_pred ---------------------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE
Confidence 5799999999999999999999 999999998753211111111222 34788999999
Q ss_pred EEEEecCCc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 272 SAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 272 ~v~~~p~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
++...+.|. ..++++|.|.++++||+..+.+.. .+.. ...+.+++.+|.++.+..|+. |.
T Consensus 179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl----ti~f--------------p~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 179 DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL----TITF--------------PSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred EEEecCCCccceEEEecCCceEEEEEeccceeeE----EEec--------------CCcceeEEEcccccEEEecCCcce
Confidence 999887642 489999999999999999987652 2211 257999999999999999975 99
Q ss_pred EEEEeccCCC---------------CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 350 LKLWDIRMDS---------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 350 i~~wd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
|.+.++.... .....+.+|.+. ..|++++.+-||..|++|+.||.|+|||+.
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-------------~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-------------SAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCC-------------cceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 9888774311 123344455552 134799999999999999999999999999
Q ss_pred CCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 415 VGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+. +++.++....+||+.+.+.|-.+....
T Consensus 308 S~-Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 308 SK-QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hH-HHHHHHhhhccccceeEeeccccceec
Confidence 88 777777778999999999766544443
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.8e-22 Score=164.81 Aligned_cols=251 Identities=14% Similarity=0.216 Sum_probs=188.1
Q ss_pred EEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCC
Q 012721 47 LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126 (457)
Q Consensus 47 latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~ 126 (457)
|++|++...|.-+++.-... ....+..|....+-.+..|. ++|++++. +
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~---------------~~~~s~~~~l~~lF~~~aH~------------~sitavAV----s 52 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPK---------------GCTDSVKPTLKPLFAFSAHA------------GSITALAV----S 52 (362)
T ss_pred EEEeeeeeEEEEEEeccCcc---------------ccccccceeeeccccccccc------------cceeEEEe----c
Confidence 67788877676666653321 00012223444455677777 99999998 5
Q ss_pred CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccc
Q 012721 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 206 (457)
Q Consensus 127 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 206 (457)
+.++++|+.|.+|+|||+........+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~l----------------------------------------------------- 79 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGIL----------------------------------------------------- 79 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcce-----------------------------------------------------
Confidence 779999999999999999876433221
Q ss_pred cccceeeccCCCCCeeEEEeCCCCC--EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE
Q 012721 207 ARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (457)
Q Consensus 207 ~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l 283 (457)
..|.+.|+++.|.++-. .|++| .||.|.+|+.. .-..... +++|.+.|+.++.+|.+ ++-
T Consensus 80 --------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KLA 142 (362)
T KOG0294|consen 80 --------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KLA 142 (362)
T ss_pred --------eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ceE
Confidence 46889999999988654 78888 99999999998 4455544 78999999999999999 999
Q ss_pred EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCcee
Q 012721 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363 (457)
Q Consensus 284 ~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~ 363 (457)
++.+.|+.+++||+-.++.. .+... ....+.+.|+|.|.+++.+....|-+|.++. .....
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~ 203 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFR 203 (362)
T ss_pred EEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhh
Confidence 99999999999999887532 12221 1234559999999988888778999999875 34433
Q ss_pred EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeee
Q 012721 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (457)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 435 (457)
.+...... .++.|- ++..|++|++|+.|.+||.++. .+...+.+|...|..+.+
T Consensus 204 ~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 204 EIENPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIAS 257 (362)
T ss_pred hhhccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEE
Confidence 33322111 244443 6788999999999999999987 788999999999999974
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=185.28 Aligned_cols=330 Identities=11% Similarity=0.122 Sum_probs=222.8
Q ss_pred hhHHhhhcCCCCCCccccCCceEEEEECCC-----------CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhccc
Q 012721 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKT-----------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD 82 (457)
Q Consensus 14 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-----------~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
|++.-+.+-..--..+.|..-|+.+.--|. ...++|++.|++|++|+++.....+.. ++.+-....
T Consensus 351 WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vy---rRNils~~l 427 (1080)
T KOG1408|consen 351 WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVY---RRNILSANL 427 (1080)
T ss_pred EeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccccee---ecccchhhh
Confidence 444433332223344568888888876651 235789999999999999874432111 111100000
Q ss_pred -ccccCCCccceeeeeccCCcccc--ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCC
Q 012721 83 -FTSTSHPEYRYKTEFQSHEPEFD--YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP 159 (457)
Q Consensus 83 -~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~ 159 (457)
.+-....+.+.+.. ...+-|+ ........-.+.+++. +|+|++|++|..-|++++|++.+-+....+
T Consensus 428 ~ki~y~d~~~q~~~d--~~~~~fdka~~s~~d~r~G~R~~~v--Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~------ 497 (1080)
T KOG1408|consen 428 SKIPYEDSTQQIMHD--ASAGIFDKALVSTCDSRFGFRALAV--SPDGQHLASGDRGGNLRVYDLQELEYTCFM------ 497 (1080)
T ss_pred hcCccccCchhhhhh--ccCCcccccchhhcCcccceEEEEE--CCCcceecccCccCceEEEEehhhhhhhhe------
Confidence 00000000000000 0001111 1222333367899999 899999999999999999999876543321
Q ss_pred ceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe
Q 012721 160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA 236 (457)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~ 236 (457)
..|...|.|+.|+. ..++|+++
T Consensus 498 -------------------------------------------------------eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 498 -------------------------------------------------------EAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred -------------------------------------------------------ecccceeEEEeecCchhhhHhhhhc
Confidence 68999999999974 35688888
Q ss_pred -CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC-ccEEEEEccCCeEEEEEccCCeeeccccccccccc
Q 012721 237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (457)
Q Consensus 237 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 314 (457)
.|..|++||+...-..++ ++.+|...|+++.|.-.| ...+++++.|..|.+--.+.... ..++..|+
T Consensus 523 srdRlIHV~Dv~rny~l~q-------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~----g~~f~r~t 591 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQ-------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS----GRLFPRHT 591 (1080)
T ss_pred cCCceEEEEecccccchhh-------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC----ceeccccc
Confidence 999999999984444443 478999999999998765 34788899998876533332110 12222211
Q ss_pred cccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc
Q 012721 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (457)
Q Consensus 315 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 393 (457)
.. -....++.|+..|..+++++++ |..|+|||+.. ++..+.|++..+.-.. ...+...
T Consensus 592 ~t--------~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~------------lIKv~lD 650 (1080)
T KOG1408|consen 592 QT--------LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGD------------LIKVILD 650 (1080)
T ss_pred cc--------cccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCc------------eEEEEEC
Confidence 11 1125689999999999999876 59999999986 8989888875433211 1478899
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 394 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 394 ~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|.|.|||+.+.|.++.++|..+| ++...+.||...|+.|.|.+|=....+
T Consensus 651 PSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 651 PSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred CCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhhee
Confidence 99999999999999999999999 788999999999999999999655443
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=9.3e-23 Score=172.87 Aligned_cols=257 Identities=17% Similarity=0.190 Sum_probs=188.0
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.+.|-+.|+.+.-.+-.+..+.++-+..|.|+||++........ ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~-~~-------------------------------- 192 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS-EP-------------------------------- 192 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc-Cc--------------------------------
Confidence 344555778888775444556667778999999999865311000 00
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
...+-+ ...+++.++ .+|...=+.++|+| ....|++| .-+.|++|...+ + ... +.+..+.+
T Consensus 193 -------~~~~~~----s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g-~W~---vd~~Pf~g 255 (440)
T KOG0302|consen 193 -------GLEVKD----SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-G-SWK---VDQRPFTG 255 (440)
T ss_pred -------cccccc----cccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc-C-cee---ecCccccc
Confidence 000000 123455555 78999999999999 33357888 889999999884 2 222 22344788
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
|...|-.++|+|.....|++||-||+|+|||+|.+.... .+ ....|.+.|+.+.|+....+||+|
T Consensus 256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~---~~------------~~kAh~sDVNVISWnr~~~lLasG 320 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA---AV------------STKAHNSDVNVISWNRREPLLASG 320 (440)
T ss_pred cccchhhhccCCccCceEEeeecCceEEEEEecCCCccc---ee------------EeeccCCceeeEEccCCcceeeec
Confidence 999999999999887899999999999999999873210 11 125678899999999988899999
Q ss_pred ec-CcEEEEeccC--CCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCC----
Q 012721 346 DY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGS---- 417 (457)
Q Consensus 346 ~~-~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~---- 417 (457)
+| |+++|||++. .++++..++.|...+ +++.|+|. ...|++++.|..|.|||+....
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 87 9999999985 367889999999876 79999995 5678889999999999986431
Q ss_pred -----------ceeeEEecCC--CcceeeeeccCCcceec
Q 012721 418 -----------AGGITVEAGK--NENRKPILQAAPRARRS 444 (457)
Q Consensus 418 -----------~~~~~~~~~~--~~v~~~~~~p~~~~~~~ 444 (457)
.+.+.+..|. ..+..|.||+.-|-.+.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence 1233555664 46899999999876654
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.5e-23 Score=164.00 Aligned_cols=220 Identities=17% Similarity=0.289 Sum_probs=166.5
Q ss_pred CCccccCCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721 26 DEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (457)
Q Consensus 26 ~~~~~h~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (457)
.+..+|.++|+-++|.. .|.+||+++.||.|.||.-++++- ........|+
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-------------------------~k~~e~~~h~-- 102 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-------------------------TKAYEHAAHS-- 102 (299)
T ss_pred eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-------------------------hhhhhhhhhc--
Confidence 34567999999999987 899999999999999999877643 2344566777
Q ss_pred ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
..|++|+|.|+.-|-.|++++.||.|.+.+.+....-..
T Consensus 103 ----------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t------------------------------- 141 (299)
T KOG1332|consen 103 ----------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT------------------------------- 141 (299)
T ss_pred ----------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-------------------------------
Confidence 899999998888888999999999999998876411100
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC---C-----------CEEEEe-CCCeEEEEEcCC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---C-----------ETFVSA-DDLRINLWNLEI 248 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~-----------~~l~~~-~d~~i~iwd~~~ 248 (457)
......|.-.|++++|.|. | +.|++| .|+.|+||+...
T Consensus 142 ---------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 142 ---------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred ---------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 0011678889999999885 4 569998 999999999983
Q ss_pred CcceeeeeecCCCcccCCCCceEEEEEecCC---ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (457)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~---~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (457)
+. .. +. ..+.+|.+.|..++|.|.- ...||+++.||++.||-.+... ..-..+++ ..
T Consensus 195 -~~-w~---~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~wk~tll-------------~~ 254 (299)
T KOG1332|consen 195 -DS-WK---LE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EPWKKTLL-------------EE 254 (299)
T ss_pred -cc-hh---hh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-Cccccccc-------------cc
Confidence 31 11 11 2478999999999999964 2489999999999999876321 11111111 22
Q ss_pred cccceEEEEEccCCCeEEEE-ecCcEEEEeccCCCC
Q 012721 326 IIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST 360 (457)
Q Consensus 326 h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~ 360 (457)
....++.+.||..|.+|+.+ +|+.|.+|.-...++
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 24679999999999999976 459999998765444
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=4.3e-21 Score=168.74 Aligned_cols=334 Identities=10% Similarity=0.069 Sum_probs=237.8
Q ss_pred CCCccccCCceEEEEECCCCCEEEEEeCCC--------eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeee
Q 012721 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE 96 (457)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (457)
..+...|++.|.|++.+||.-.+|+|-..| .++|||..+... +..
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L~V 149 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------LHV 149 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------eee
Confidence 334566999999999999999999886555 499999765442 222
Q ss_pred eccCCccccccccccccCcEEEEEEEecCCCCEEEEe--eCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (457)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~--s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (457)
+...+ ..|.+++|++...|.+++.. +.+..+.+||...+......+. .++.|....|+|.+..++
T Consensus 150 ~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-sne~v~~a~FHPtd~nli 216 (626)
T KOG2106|consen 150 IGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-SNEVVFLATFHPTDPNLI 216 (626)
T ss_pred ecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-ccceEEEEEeccCCCcEE
Confidence 33333 78999999876677777764 5778899999987654332221 223356677888887777
Q ss_pred ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCccee
Q 012721 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (457)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (457)
...+ .+.+.+|+.+...-.+....+.+.....|.|++|.++|. +++| .+|.|.||+.. ..+..
T Consensus 217 it~G--------------k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~ 280 (626)
T KOG2106|consen 217 ITCG--------------KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRIS 280 (626)
T ss_pred EEeC--------------CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEE
Confidence 6665 568889988876555555555444557799999999986 5677 99999999987 34333
Q ss_pred eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-------cccc-cccc------------
Q 012721 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SARI-LRDA------------ 313 (457)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-------~~~~-~~~~------------ 313 (457)
+. ...|.+.|.+++...+| . |++|+.|..|..||-.-.+.... .+++ .+++
T Consensus 281 k~-------~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 281 KQ-------VHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred eE-------eeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 32 23799999999999998 5 55599999999999332221100 0011 0100
Q ss_pred ---ccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721 314 ---AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (457)
Q Consensus 314 ---~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 389 (457)
...........+|....+.++.+|+...+++++ |+.+++|+ + .++..+....... .+
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~----------------~~ 412 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA----------------EC 412 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce----------------eE
Confidence 000011123468889999999999988888765 59999999 2 5665554443333 48
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 390 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 390 ~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
+.|+|.| .||.|...|...+.|..+. ...++.....+++.|+|+|+|-..+.|
T Consensus 413 ~~fhpsg-~va~Gt~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred eeccCcc-eEEEeeccceEEEEecccc--eeEEEEecCCceEEEEEcCCCCEEEEe
Confidence 9999999 9999999999999999885 444555559999999999999888873
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=5.6e-22 Score=163.49 Aligned_cols=243 Identities=16% Similarity=0.220 Sum_probs=178.4
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|.++|.+++|+.||..+++|+.|+.+++||+.+++. .++..|+
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~----------------------------~~v~~Hd------ 113 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV----------------------------SQVAAHD------ 113 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe----------------------------eeeeecc------
Confidence 345899999999999999999999999999999999865 3677888
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
++|..+.|.+...-..|++||.|++|+.||.+.......+.+
T Consensus 114 ------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------------------------- 155 (347)
T KOG0647|consen 114 ------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------------------------- 155 (347)
T ss_pred ------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--------------------------------
Confidence 999999998655566899999999999999987655544332
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
...++++.. ....++.+ .++.|.+|+++......+.. ....
T Consensus 156 ------------------------------PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~------~SpL 197 (347)
T KOG0647|consen 156 ------------------------------PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRI------ESPL 197 (347)
T ss_pred ------------------------------cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhh------cCcc
Confidence 224555544 24467777 99999999997333222211 1123
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-E
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~ 345 (457)
.-.+.||+..++. ...+.|+..|.+.+..+..+.. ...-.|+.|...... .+.--.|++++|+|.-..|++ |
T Consensus 198 k~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~----~~~VYaVNsi~FhP~hgtlvTaG 270 (347)
T KOG0647|consen 198 KWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSV----NDDVYAVNSIAFHPVHGTLVTAG 270 (347)
T ss_pred cceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCC----CCceEEecceEeecccceEEEec
Confidence 4568999999988 7779999999999998887532 112344443211110 001236889999998777776 5
Q ss_pred ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
+||++.+||-+. ...+.....|...+ ++++|+.+|.++|-+.
T Consensus 271 sDGtf~FWDkda-r~kLk~s~~~~qpI---------------tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 271 SDGTFSFWDKDA-RTKLKTSETHPQPI---------------TCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCceEEEecchh-hhhhhccCcCCCcc---------------ceeEecCCCCEEEEEe
Confidence 789999999875 56666777777765 6899999999887553
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.8e-22 Score=179.63 Aligned_cols=312 Identities=15% Similarity=0.204 Sum_probs=217.2
Q ss_pred CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
.....+|++.|.|++..|.|.+||+|+.||+|+||.+.++.. +.++
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---------------------------vr~~------- 438 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---------------------------VRTV------- 438 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---------------------------EEEE-------
Confidence 344556999999999999999999999999999999998874 2222
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
...+.|.+|+|.|.++...||++-... +.+-+..-|....... . ...+...
T Consensus 439 ------~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~--t-------------~ell~~~------- 489 (733)
T KOG0650|consen 439 ------QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGP--T-------------KELLASA------- 489 (733)
T ss_pred ------eecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcc--h-------------hhhhhcC-------
Confidence 222569999998777766666665554 5555544331111000 0 0000000
Q ss_pred ccCCccccccceEEEeccCccccc-cceeeccCCCCCeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecC
Q 012721 185 GYHLEWTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
+ ..-..+..+..|.-......+ -+... ..|...|..+.|+..|.+|++. ....|.|.++. ......
T Consensus 490 -~-~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~sQ~----- 560 (733)
T KOG0650|consen 490 -P-NESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRKSQS----- 560 (733)
T ss_pred -C-CccCCcccceeechhhhhhhccceEEE-EecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cccccC-----
Confidence 0 000112245566554322222 12222 5688999999999999999985 34679999987 222221
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 339 (457)
.+....+.|.++.|+|.. .+|++++ ...|++||+....+.. +.+.+ ...|..++.+|.|
T Consensus 561 --PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvK---kL~tg--------------~kwiS~msihp~G 619 (733)
T KOG0650|consen 561 --PFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVK---KLLTG--------------SKWISSMSIHPNG 619 (733)
T ss_pred --chhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHH---HHhcC--------------CeeeeeeeecCCC
Confidence 144556789999999998 6666665 4579999998865431 22222 3579999999999
Q ss_pred CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC--C-
Q 012721 340 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--V- 415 (457)
Q Consensus 340 ~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~--~- 415 (457)
..|+.|+. +.+..+|+....++.++++.|...+ ++++|++.-.++++|+.||++.|+--. +
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 99998885 9999999998789999999998876 799999999999999999999988521 1
Q ss_pred ----C-CceeeEEecCCCc----ceeeeeccCCcceec
Q 012721 416 ----G-SAGGITVEAGKNE----NRKPILQAAPRARRS 444 (457)
Q Consensus 416 ----~-~~~~~~~~~~~~~----v~~~~~~p~~~~~~~ 444 (457)
. -.++..+.+|... |..+.|||..|=.-+
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence 1 1245678899766 888899999875544
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=9.8e-22 Score=172.37 Aligned_cols=263 Identities=15% Similarity=0.157 Sum_probs=185.8
Q ss_pred CcEEEEEEEecCCCCEEEE--eeCCCeEEEEEeccc--ceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 114 EKINRVRWCAAPNGSMFIL--STNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s--~s~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..+.++.| +... .|++ .+.|..|++|.-... +...+....... ..|........+...|
T Consensus 35 pg~~s~~w--~~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~-------------~~Cv~~~s~S~y~~sg- 97 (673)
T KOG4378|consen 35 PGDFSFNW--QRRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN-------------AFCVACASQSLYEISG- 97 (673)
T ss_pred Ccceeeec--cccc-eEEEeecCCceeEEEecccCCCCccceeeccccch-------------HHHHhhhhcceeeecc-
Confidence 45999999 4444 3444 457889999975443 222222211111 1111111111111111
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC-C
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-T 267 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~ 267 (457)
..++.++|||+.. +.+..++++|...|+++.++-...+||++ ..|.|.|..+. .+..... +... .
T Consensus 98 -G~~~~Vkiwdl~~----kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~-------f~~~sg 164 (673)
T KOG4378|consen 98 -GQSGCVKIWDLRA----KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTT-------FTIDSG 164 (673)
T ss_pred -CcCceeeehhhHH----HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-cCccccc-------eecCCC
Confidence 1255899999962 33333448999999999999999999999 89999999998 4444333 2222 3
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-E-E
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S-R 345 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s-~ 345 (457)
..+.-+.|+|....+|.+++.+|.|.+||+..... .+. ....|..+...++|+|....|+ + |
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp------~~~----------~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP------IFH----------ASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCc------ccc----------hhhhccCCcCcceecCCccceEEEec
Confidence 45668999998756888899999999999987642 222 1356788999999999765554 4 3
Q ss_pred ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
-|..|.+||++. .+....+...... ..++|+++|.+|+.|...|.|..||++..+.++.++.+
T Consensus 229 ~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 229 YDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 469999999985 5555555543332 58999999999999999999999999999889999999
Q ss_pred CCCcceeeeeccCC
Q 012721 426 GKNENRKPILQAAP 439 (457)
Q Consensus 426 ~~~~v~~~~~~p~~ 439 (457)
|...|++++|.|..
T Consensus 292 h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDASVTRVAFQPSP 305 (673)
T ss_pred cccceeEEEeeecc
Confidence 99999999999874
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.1e-22 Score=178.53 Aligned_cols=255 Identities=18% Similarity=0.282 Sum_probs=195.3
Q ss_pred hhhHHhhhcCCCCC---CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCC
Q 012721 13 EWKCSQAFGERNPD---EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (457)
Q Consensus 13 ~~~~~~~~~~~~~~---~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (457)
-|.++|. +.+.+. ..++-...|+++...|||+.|++|++-.++.|||+......
T Consensus 444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr---------------------- 500 (705)
T KOG0639|consen 444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR---------------------- 500 (705)
T ss_pred EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc----------------------
Confidence 3666654 233332 23345778999999999999999999999999999765431
Q ss_pred ccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (457)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (457)
...++.... -...+++. ++|.+..+++..||.|.|||+.+...+..
T Consensus 501 ---ikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vrq----------------- 546 (705)
T KOG0639|consen 501 ---IKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVRQ----------------- 546 (705)
T ss_pred ---hhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeeec-----------------
Confidence 222232222 34667777 78999999999999999999998755443
Q ss_pred cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (457)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (457)
+++|.+.+.||.+++||..|-+| -|++|+.||++.
T Consensus 547 --------------------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 547 --------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred --------------------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 27999999999999999999999 999999999994
Q ss_pred CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (457)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (457)
+...+. ......|.++..+|++ .+++.|-+++.+.|......+.. . +.-|.+
T Consensus 583 -grqlqq--------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~ky-----q-------------lhlheS 634 (705)
T KOG0639|consen 583 -GRQLQQ--------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKY-----Q-------------LHLHES 634 (705)
T ss_pred -hhhhhh--------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccce-----e-------------eccccc
Confidence 433322 1234789999999999 99999999999888776654211 1 234567
Q ss_pred ceEEEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721 329 SISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (457)
Q Consensus 329 ~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 407 (457)
-|.++.|.+.|+++++. -|+-+..|..-. +..+...+.... |+++.+|.|.+||+||+.|..
T Consensus 635 cVLSlKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~Ss----------------VlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSS----------------VLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred EEEEEEecccCceeeecCchhhhhhccCcc-ccceeeccccCc----------------ceeeeeccCceEEEecCCCcc
Confidence 89999999999999975 469999998864 565655544333 278999999999999999998
Q ss_pred EEEEec
Q 012721 408 LRIFSH 413 (457)
Q Consensus 408 i~iw~~ 413 (457)
..||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888875
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=6.8e-22 Score=180.09 Aligned_cols=231 Identities=16% Similarity=0.282 Sum_probs=182.0
Q ss_pred ccCCceEE-EEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 30 QDVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 30 ~h~~~V~~-~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
+|.+-|.+ +++-+ ++-.|++|+.|..|.+|...+.. ++.+|+||+
T Consensus 55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~------ 101 (745)
T KOG0301|consen 55 GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------------------PLYTLKGHK------ 101 (745)
T ss_pred cCcceeeccceeccccCcceEeecccceEEEEecCCCC---------------------------chhhhhccc------
Confidence 36677777 88876 44569999999999999988766 557899999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++. ..++. +++||.|.++++|....-...
T Consensus 102 ------snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~~------------------------------------- 135 (745)
T KOG0301|consen 102 ------SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVYS------------------------------------- 135 (745)
T ss_pred ------cceeeeec--CCcCc-eEecccccceEEecchhhhcc-------------------------------------
Confidence 77999987 45554 999999999999987542111
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
+.+|+..|+++..-|++ .+++| .|.+|++|.- +...++ +.+|
T Consensus 136 --------------------------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~t-------f~gH 178 (745)
T KOG0301|consen 136 --------------------------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKT-------FSGH 178 (745)
T ss_pred --------------------------cCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhh-------hccc
Confidence 17999999999999888 67777 9999999974 445544 7899
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.+.|..+++-+++ .|++++.||.|++|++... .+.+ +.+|...|+++...+++..+++++
T Consensus 179 tD~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge-------~l~~-----------~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 179 TDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGE-------VLLE-----------MHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred hhheeeeEEecCC--CeEeecCCceEEEEeccCc-------eeee-----------eeccceEEEEEEecCCCCeEEEec
Confidence 9999999999984 5899999999999999543 2222 256788999999777777888765
Q ss_pred -cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 347 -~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
|+++++|+.. .+.+.+..+...+ +++.+-++|. |++|+.||.||||....
T Consensus 239 EDrtlriW~~~---e~~q~I~lPttsi---------------Wsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 239 EDRTLRIWKKD---ECVQVITLPTTSI---------------WSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCceEEEeecC---ceEEEEecCccce---------------EEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 5999999974 6666666544333 5777777776 67899999999998763
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-23 Score=192.47 Aligned_cols=233 Identities=18% Similarity=0.301 Sum_probs=192.1
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|...|.|+..-..++.+++|+.|-.+.+|.+..-. .+..|.+|+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he-------- 70 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE-------- 70 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC--------
Confidence 489999999997788999999999999999976443 345688999
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
.+|.++.| +.+..+|++|+.+|+|++||++..+....
T Consensus 71 ----spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vrt------------------------------------- 107 (825)
T KOG0267|consen 71 ----SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVRT------------------------------------- 107 (825)
T ss_pred ----Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------
Confidence 89999999 67777899999999999999997754432
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
+.+|...+.++.|+|-+.+++.| .|..+++||.+ ...+... +.+|..
T Consensus 108 ------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~~ 155 (825)
T KOG0267|consen 108 ------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHTR 155 (825)
T ss_pred ------------------------hhccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCcc
Confidence 26899999999999999999999 99999999999 4445544 577999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~ 347 (457)
.+.++.|+|+| .+++.+++|.++++||...++.. .. |..|.+.+..+.|+|..-++++|+ |
T Consensus 156 vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~e-------------f~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 156 VVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KE-------------FKSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred eeEEEeecCCC-ceeeccCCcceeeeecccccccc----cc-------------cccccccccccccCchhhhhccCCCC
Confidence 99999999999 99999999999999999988543 22 445778999999999998888886 5
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
+++++||+++ ...+........ +|.+..|+|++..+++|..+.
T Consensus 218 ~tv~f~dlet-fe~I~s~~~~~~---------------~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 218 RTVRFWDLET-FEVISSGKPETD---------------GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ceeeeeccce-eEEeeccCCccC---------------CceeeeecCCceeeecCchhh
Confidence 9999999985 344443333222 236899999999999887754
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.3e-20 Score=165.67 Aligned_cols=271 Identities=14% Similarity=0.254 Sum_probs=188.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
..-|.|++|.++|+ ++||+++|.|.||+..+.+ ...+...|+
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------------------------~~k~~~aH~---------- 287 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------------------------ISKQVHAHD---------- 287 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------------------------EEeEeeecC----------
Confidence 47899999999987 5699999999999986544 233444787
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecC-CCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+.|.+++.+ .+| .|++|+.|+.|..|| .+.+..+..+.+. ...++.++-...+ ++....
T Consensus 288 --ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt------------ 347 (626)
T KOG2106|consen 288 --GGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT------------ 347 (626)
T ss_pred --CceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec------------
Confidence 999999984 677 566799999999999 3222222222111 1112211111000 111000
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+.|..-.++.. ...+. .+|......++.+|+.+.++++ .|+.+++|+ + .+..... .-.++
T Consensus 348 --rN~iL~Gt~~~~----f~~~v-~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~ 409 (626)
T KOG2106|consen 348 --RNFILQGTLENG----FTLTV-QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDP 409 (626)
T ss_pred --cceEEEeeecCC----ceEEE-EecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCc
Confidence 111222222211 11112 6899999999999999999999 999999999 3 2322221 13367
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~ 348 (457)
+.|+.|+|.| .+|.|...|...+.|.++..+. ..|. . +.+++++.|+|+|.+||.|+. +
T Consensus 410 ~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv-------~~~~----------d-~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 410 AECADFHPSG--VVAVGTATGRWFVLDTETQDLV-------TIHT----------D-NEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred eeEeeccCcc--eEEEeeccceEEEEecccceeE-------EEEe----------c-CCceEEEEEcCCCCEEEEecCCC
Confidence 8999999997 8999999999999999885433 2111 1 468999999999999999985 9
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
.|++|.+..++..+.....+.+. .++.+.||+|+++|.+-+-|-.|..|.
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGS--------------PITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCc--------------eeEEeeecCCCceEEeccCceEEEEEc
Confidence 99999998767776666555441 237999999999999999999999993
No 143
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=6.2e-21 Score=157.95 Aligned_cols=244 Identities=18% Similarity=0.200 Sum_probs=179.0
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
..+.|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+..|.
T Consensus 49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~----------------------------~igth~----- 94 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED----------------------------QIGTHD----- 94 (323)
T ss_pred hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce----------------------------eeccCC-----
Confidence 3456999999999997 457889999999999999988753 566777
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
++|.+|.++ +....+++|+.|++|++||.........
T Consensus 95 -------~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~---------------------------------- 131 (323)
T KOG1036|consen 95 -------EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT---------------------------------- 131 (323)
T ss_pred -------CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc----------------------------------
Confidence 899999995 5556899999999999999886322111
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
......|.++... ++.|+.| .|..+.+||++......+.- -..
T Consensus 132 ----------------------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r------eS~ 175 (323)
T KOG1036|consen 132 ----------------------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR------ESS 175 (323)
T ss_pred ----------------------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc------ccc
Confidence 1233478888775 6678887 99999999999555444321 123
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
....+.|+++.|++ .=+++++.||.|.+=.+............|+.|....... .---+|++++|+|--..+|+|
T Consensus 176 lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----~~~yPVNai~Fhp~~~tfaTg 250 (323)
T KOG1036|consen 176 LKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----EIIYPVNAIAFHPIHGTFATG 250 (323)
T ss_pred ceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc----eEEEEeceeEeccccceEEec
Confidence 34678999999977 6688899999988765555422222223444432222111 112479999999998899987
Q ss_pred e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (457)
Q Consensus 346 ~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 404 (457)
+ ||.|.+||+.. .+.+..+...+..+ -+++|+.||..||.++.
T Consensus 251 GsDG~V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 251 GSDGIVNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCceEEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence 5 69999999975 67777776654443 48999999999999875
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=2.7e-21 Score=176.16 Aligned_cols=328 Identities=15% Similarity=0.154 Sum_probs=222.6
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccce---eeeeccCCccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY---KTEFQSHEPEF 104 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~~ 104 (457)
..+|.+.|+++.|+|.+..|.+++.|.++.||..++..- .+.. +....|..
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG-----------------------iWv~~vRlGe~gg~a--- 316 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG-----------------------IWVDVVRLGEVGGSA--- 316 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccc-----------------------eEEEEEEeecccccc---
Confidence 347999999999999998899999999999999765421 0111 11222222
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-cceeEE-EeecCCCceeeeeeccccccccccCCCCCc
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
..-....| +++++.+++-+.-|..++|...+ ...... ........|.++.|.+....++......+.
T Consensus 317 ---------~GF~g~lw--~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTT 385 (764)
T KOG1063|consen 317 ---------GGFWGGLW--SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTT 385 (764)
T ss_pred ---------cceeeEEE--cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccce
Confidence 56788888 68888999999999999999332 222222 222344568888888665555544442222
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC------------
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------------ 249 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~------------ 249 (457)
.+++... .... |- .+... +-|.-.++|+++-+....+++| +.+.+++|+....
T Consensus 386 RlFa~wg----~q~~-wH--------EiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~ 451 (764)
T KOG1063|consen 386 RLFARWG----RQQE-WH--------EIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKC 451 (764)
T ss_pred eeecccc----cccc-ee--------eeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCcc
Confidence 2222110 0000 11 11111 5577889999998766677888 8889999976420
Q ss_pred -------------------------------cc---eeee--------eecCC--------------CcccCCCCceEEE
Q 012721 250 -------------------------------DQ---CFNI--------VDMKP--------------SNMDDLTEVITSA 273 (457)
Q Consensus 250 -------------------------------~~---~~~~--------~~~~~--------------~~~~~~~~~i~~v 273 (457)
+. ..++ +..+| +++-+|...|+++
T Consensus 452 ~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l 531 (764)
T KOG1063|consen 452 FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYAL 531 (764)
T ss_pred ccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEE
Confidence 00 0000 00011 2356899999999
Q ss_pred EEecCCccEEEEEccC-----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721 274 EFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~ 347 (457)
+.+|++ +++|+++.. -.|++|+..+-... ..+.+|.-.|+.++|||||+||++.+ |
T Consensus 532 ~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~-----------------~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 532 AISPTG-NLIASACKSSLKEHAVIRLWNTANWLQV-----------------QELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred EecCCC-CEEeehhhhCCccceEEEEEeccchhhh-----------------heecccceEEEEEEECCCCcEEEEeecC
Confidence 999999 999999854 35899998765321 12466788999999999999999887 5
Q ss_pred CcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC--Cceee-
Q 012721 348 MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--SAGGI- 421 (457)
Q Consensus 348 ~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~--~~~~~- 421 (457)
.++.+|........ ....+.|...+ .++.|+|++.+++|+|.|.+|.+|..... +....
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRII---------------WdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRII---------------WDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEE---------------EEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 99999988532222 22355666654 79999999999999999999999999877 22222
Q ss_pred EEecCCCcceeeeeccCC
Q 012721 422 TVEAGKNENRKPILQAAP 439 (457)
Q Consensus 422 ~~~~~~~~v~~~~~~p~~ 439 (457)
....+..+|+.+++.|--
T Consensus 659 a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 659 ACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred chhccCCceeeEEeeccc
Confidence 455788999999998764
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=9.2e-22 Score=177.60 Aligned_cols=283 Identities=15% Similarity=0.148 Sum_probs=187.9
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
..+.|...|..+.|.|....|++++.|.++++||+.+.+.. -...+.||.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~----- 144 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT----- 144 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc-----
Confidence 45569999999999997788999999999999999987752 122477888
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++|.| .+...|++|+.||.|.|||++.........+ +
T Consensus 145 -------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~------~------------------------ 186 (720)
T KOG0321|consen 145 -------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEF------D------------------------ 186 (720)
T ss_pred -------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHH------h------------------------
Confidence 8999999975 4556899999999999999876532111000 0
Q ss_pred CCccccccceEEEeccCc------cccccceeeccCCCCCeeE---EEeCCCCCEEEEe--CCCeEEEEEcCCCcceeee
Q 012721 187 HLEWTENMATKIANVGNS------VHARCQKVYPHAHDFNINS---ISNNSDCETFVSA--DDLRINLWNLEISDQCFNI 255 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~h~~~v~~---~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~ 255 (457)
.+++...+. ...+.++.- ..+...|.+ +.+..|...||++ .|+.|++||++......+.
T Consensus 187 ---------~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 187 ---------NRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred ---------hhhhccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 000000000 000111111 344444444 4445577888886 5999999999954333222
Q ss_pred eecCCCcccCC---CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 256 VDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 256 ~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
-......+.-| ...+.++.....| .+|.+.+.|+.|.+||+..-... ....+.++.. ...-..
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~~-----------~sf~vk 322 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKLN-----------SSFYVK 322 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC--chhhccCccc-----------ceeeee
Confidence 11111223333 4567888888888 66666666999999999875321 1122222000 011223
Q ss_pred EEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEE
Q 012721 333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRI 410 (457)
Q Consensus 333 ~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~i 410 (457)
-..+|++.+|++|+ +...++|.+.........+.+|.-.+ ++++|.|. -.-++++++|.+++|
T Consensus 323 s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV---------------t~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 323 SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV---------------TTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE---------------EEEeeccccCCCceeeccCcceEE
Confidence 35689999999997 59999999987677778888888765 78999874 334667799999999
Q ss_pred EecCCC
Q 012721 411 FSHGVG 416 (457)
Q Consensus 411 w~~~~~ 416 (457)
|++.++
T Consensus 388 W~l~~~ 393 (720)
T KOG0321|consen 388 WRLSNG 393 (720)
T ss_pred EeccCc
Confidence 999876
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=8.7e-22 Score=164.18 Aligned_cols=268 Identities=15% Similarity=0.213 Sum_probs=186.7
Q ss_pred ccCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 30 ~h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
.|.+..+.++|+-+ ..+||.|+.-|.|+|.|+.+++ +...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG---- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHG---- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh---------------------------hccceeccC----
Confidence 36778888999764 3589999999999999998776 456788898
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|+.+.++| .+.++++++|.|.+|++|+++++.++.++..-
T Consensus 136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~----------------------------- 177 (385)
T KOG1034|consen 136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV----------------------------- 177 (385)
T ss_pred --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccc-----------------------------
Confidence 8899999975 44579999999999999999999887665321
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeee------c
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD------M 258 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~------~ 258 (457)
.+|.+.|.++.|+++|.+|++| .|.+|++|++.. .+....++ .
T Consensus 178 -----------------------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~-~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 178 -----------------------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV-KEFKNKLELSITYSP 227 (385)
T ss_pred -----------------------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh-hHHhhhhhhhcccCC
Confidence 6899999999999999999999 999999999982 21110000 0
Q ss_pred CC---------------CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721 259 KP---------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (457)
Q Consensus 259 ~~---------------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
++ .+-.-|...|-|+.|- | +++++=+-++.|..|-...-+.... .+... .........+
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~--~vkp~-es~~Ti~~~~ 301 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIH--NVKPP-ESATTILGEF 301 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhh--ccCCC-ccceeeeeEe
Confidence 00 0123466667777765 3 6788888899999998732211100 00000 0000111122
Q ss_pred eccccceEEEEE--ccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE
Q 012721 324 TEIIASISDIKF--ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (457)
Q Consensus 324 ~~h~~~v~~~~~--s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 400 (457)
.-....|+.+.| .|-++.||.|.. |.|++||++....+..+-..|..... .|...+|+.|+.+|+
T Consensus 302 ~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~------------tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 302 DYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS------------TVRQTSFSRDGSILV 369 (385)
T ss_pred ccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccc------------eeeeeeecccCcEEE
Confidence 333456777665 466899999987 99999999852222222112222111 236899999999999
Q ss_pred EEeCCCcEEEEecC
Q 012721 401 TGSYSNLLRIFSHG 414 (457)
Q Consensus 401 s~~~dg~i~iw~~~ 414 (457)
..++|++|.-||..
T Consensus 370 ~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 370 LVCDDGTVWRWDRV 383 (385)
T ss_pred EEeCCCcEEEEEee
Confidence 99999999999864
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=167.94 Aligned_cols=267 Identities=16% Similarity=0.208 Sum_probs=181.9
Q ss_pred CceEEEEECC-------CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 33 DIVSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 33 ~~V~~~~~s~-------~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
....|++|.. .|+|+|.|+.|..|-|||++-.....+.-+ |....... .....+.-..-.+|+
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~----LGs~~sk~--~~k~~k~~~~~~gHT---- 243 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVT----LGSKASKK--KKKKGKRSNSASGHT---- 243 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccccccee----echhhhhh--hhhhcccccccccch----
Confidence 3446777743 368999999999999999874433211000 00000000 000000001123455
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|.+++|. ....+.|++||.|.+|++||+.++++...+
T Consensus 244 --------davl~Ls~n-~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-------------------------------- 282 (463)
T KOG0270|consen 244 --------DAVLALSWN-RNFRNVLASGSADKTVKLWDVDTGKPKSSI-------------------------------- 282 (463)
T ss_pred --------HHHHHHHhc-cccceeEEecCCCceEEEEEcCCCCcceeh--------------------------------
Confidence 888999985 234568999999999999999999876553
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..|...|.+++|+| ....|++| .|++|.+.|.+.....-..+
T Consensus 283 -----------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w------- 326 (463)
T KOG0270|consen 283 -----------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW------- 326 (463)
T ss_pred -----------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-------
Confidence 46888999999998 56788889 99999999999433332222
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-E
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L 342 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l 342 (457)
.-.+.|-.++|+|.....++++..||+|+-+|+|+... .+|. +..|.++|+++++++.-.. +
T Consensus 327 -k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt-----------~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 327 -KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWT-----------LKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred -EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeE-----------EEeccCCcceEEecCCCCcce
Confidence 13367899999999878899999999999999998631 2333 3678899999999987554 4
Q ss_pred EEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCC
Q 012721 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 343 ~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~ 417 (457)
++++ ++.|++|++.. ..-.....|.....++ .++++.|+- -+++.|+..+.++|||+.+..
T Consensus 390 ~t~s~d~~Vklw~~~~--~~~~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDV--DSPKSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eeccccceEEEEeecC--CCCcccccccccccce------------eecccCCCcceEEEecCccceEEEeecccCh
Confidence 5554 59999999963 2222333344333222 356677764 467788888899999998873
No 148
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=162.62 Aligned_cols=195 Identities=20% Similarity=0.313 Sum_probs=147.1
Q ss_pred CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEec
Q 012721 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (457)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s 124 (457)
..+|++...|.|+|||..+++ .+..++++. ..++.++|...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~---------------------------~l~~fk~~~------------~~~N~vrf~~~ 81 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ---------------------------LLEEFKGPP------------ATTNGVRFISC 81 (376)
T ss_pred eeEEEEecCCeEEEEeccchh---------------------------hhheecCCC------------CcccceEEecC
Confidence 578999999999999999876 346788888 77899999732
Q ss_pred CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (457)
Q Consensus 125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 204 (457)
.....+.+|+.||+|++||++.......+..
T Consensus 82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~------------------------------------------------- 112 (376)
T KOG1188|consen 82 DSPHGVISCSSDGTVRLWDIRSQAESARISW------------------------------------------------- 112 (376)
T ss_pred CCCCeeEEeccCCeEEEEEeecchhhhheec-------------------------------------------------
Confidence 2456788999999999999987654433221
Q ss_pred cccccceeeccCC-CCCeeEEEeCCCCCEEEEe-----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC
Q 012721 205 VHARCQKVYPHAH-DFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (457)
Q Consensus 205 ~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 278 (457)
..+ ..+..|++.+-+++.+++| .|-.|.+||++...+.+..+ .+.|...|+++.|+|.
T Consensus 113 ----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 113 ----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS 176 (376)
T ss_pred ----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence 222 2467788887778888886 36789999999655545443 5789999999999999
Q ss_pred CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEe-cCcEEEEecc
Q 012721 279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIR 356 (457)
Q Consensus 279 ~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~-~~~i~~wd~~ 356 (457)
.+++|++||.||.|.|||+......+....++. |.+.|.++.|..++ +.|.+-+ ..+..+|+++
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--------------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--------------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhhc--------------ccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 999999999999999999987644333233333 35678999998877 2244433 4888888876
Q ss_pred C
Q 012721 357 M 357 (457)
Q Consensus 357 ~ 357 (457)
.
T Consensus 243 ~ 243 (376)
T KOG1188|consen 243 D 243 (376)
T ss_pred C
Confidence 4
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.2e-22 Score=193.38 Aligned_cols=193 Identities=18% Similarity=0.160 Sum_probs=151.3
Q ss_pred cCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeE
Q 012721 215 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (457)
Q Consensus 215 ~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 292 (457)
..|.+.|..+.|++.+. +||+| .||.|.|||++........ .-....+.|.+++|+..-...|++++.+|.+
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 67999999999999655 89999 9999999999943333221 0122457899999998765799999999999
Q ss_pred EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC--CeEEE-Eec--CcEEEEeccCCCCceeEeee
Q 012721 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLS-RDY--MNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s-~~~--~~i~~wd~~~~~~~~~~~~~ 367 (457)
.|||++..+.+. .+.. .+ -...+..+.|+|+. +++++ .+| -.|.+||+|....+++.+++
T Consensus 187 ~iWDlr~~~pii----~ls~---~~--------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~ 251 (1049)
T KOG0307|consen 187 VIWDLRKKKPII----KLSD---TP--------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG 251 (1049)
T ss_pred eeccccCCCccc----cccc---CC--------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc
Confidence 999999875432 1111 00 01347899999986 33333 344 78999999987889999999
Q ss_pred ccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|...+ +++.|++.+ .+|++++.|++|.+|+.+++ +.+..+......+..|.|.|..|....
T Consensus 252 H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A 313 (1049)
T KOG0307|consen 252 HQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMA 313 (1049)
T ss_pred cccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhh
Confidence 98765 799999865 89999999999999999999 677788888899999999999885443
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.4e-19 Score=162.31 Aligned_cols=347 Identities=16% Similarity=0.132 Sum_probs=222.1
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
..+.|++++.+|.+..++.|+.||.+.+++...++.. +...|...+
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-------------------------~~r~l~rq~--------- 154 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-------------------------YKRSLMRQK--------- 154 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEE-------------------------EEeeccccc---------
Confidence 4679999999999999999999997777776665542 334444444
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCc---eeeeeeccccccccccCCCCCceeccC
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF---VSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.|.+++| ++++..+++|+.||.|++||...+........+...- -..+.| ++.++.+
T Consensus 155 ---sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW--------------Sv~~Lrd 215 (691)
T KOG2048|consen 155 ---SRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW--------------SVLFLRD 215 (691)
T ss_pred ---ceEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE--------------EEEEeec
Confidence 88999999 7899899999999999999999887666443322110 001111 1233333
Q ss_pred Ccc---ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 188 LEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 188 ~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
+.. ++.+.+++||...-+ .++.+ ..|...|.|++.++++..++++ .|+.|..|.....+..... . ...
T Consensus 216 ~tI~sgDS~G~V~FWd~~~gT---LiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~--~--~~r 287 (691)
T KOG2048|consen 216 STIASGDSAGTVTFWDSIFGT---LIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI--N--SRR 287 (691)
T ss_pred CcEEEecCCceEEEEcccCcc---hhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee--e--ccc
Confidence 333 345689999987543 33333 6789999999999998888888 9999999988744332211 1 224
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-------------------ccccccccccc--------
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------------------SARILRDAAES-------- 316 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-------------------~~~~~~~~~~~-------- 316 (457)
..|...+.+++..++ .+++|+.|.++.+--.+.-+.... ....+..|...
T Consensus 288 ~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~ 364 (691)
T KOG2048|consen 288 DLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVI 364 (691)
T ss_pred cCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcc
Confidence 678888999998875 688899998887755443111000 00001010000
Q ss_pred -------cCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeE-------------------------
Q 012721 317 -------HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT------------------------- 364 (457)
Q Consensus 317 -------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~------------------------- 364 (457)
...-..+..-...|.+.+.||+|++|+.+.-..+++|.+.... .+..
T Consensus 365 ~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 365 LQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKL 443 (691)
T ss_pred cccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceE
Confidence 0000112223456889999999999998876667777665311 1100
Q ss_pred ------------eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721 365 ------------FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 432 (457)
Q Consensus 365 ------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 432 (457)
+.........+..+-...+...+..+..||+|+|||+.+.+|.|.+|++.+++ .......-...++.
T Consensus 444 ~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~-~~~l~~rln~~vTa 522 (691)
T KOG2048|consen 444 FLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE-SHLLKVRLNIDVTA 522 (691)
T ss_pred EEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce-eecchhccCcceee
Confidence 00000000000011112233345789999999999999999999999999983 33333334488999
Q ss_pred eeeccCCccee
Q 012721 433 PILQAAPRARR 443 (457)
Q Consensus 433 ~~~~p~~~~~~ 443 (457)
++++|.....+
T Consensus 523 ~~~~~~~~~~l 533 (691)
T KOG2048|consen 523 AAFSPFVRNRL 533 (691)
T ss_pred eeccccccCcE
Confidence 99997655443
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=5.3e-21 Score=172.64 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=116.4
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~ 346 (457)
..|+.+.|+|.....|++++.||.|++|.+..+.+.. ........+..|...|+++.|+|- ...|++++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------NEMTPEKILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCc----------ccCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence 3467888999777899999999999999998764331 111223457889999999999995 45667776
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
. -+|++||+.. .+....+.+|.+.+ +.++|||||+.+|+.+.||+|++|+-++++..+..-.+
T Consensus 698 yd~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g 761 (1012)
T KOG1445|consen 698 YDSTIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG 761 (1012)
T ss_pred ccceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence 4 9999999986 88888999999865 79999999999999999999999999988666554443
Q ss_pred CCC-cceeeeeccCCcceec
Q 012721 426 GKN-ENRKPILQAAPRARRS 444 (457)
Q Consensus 426 ~~~-~v~~~~~~p~~~~~~~ 444 (457)
-.+ .--.+.|.-+++-...
T Consensus 762 pvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred CccCcceeEEEEecCcEEEE
Confidence 322 2234567777665443
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.9e-21 Score=169.45 Aligned_cols=223 Identities=15% Similarity=0.194 Sum_probs=177.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
+.-.|++......|+++|+..+.|+|||+.... +.+.+++|.
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl---------------------------~hr~lkdh~----------- 121 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKL---------------------------IHRFLKDHQ----------- 121 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHH---------------------------HhhhccCCc-----------
Confidence 344566666666899999999999999998443 456788898
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..|++|.| +..+.+||+++..|.|.|..+.++.....+.
T Consensus 122 -stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-------------------------------------- 160 (673)
T KOG4378|consen 122 -STVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT-------------------------------------- 160 (673)
T ss_pred -ceeEEEEe--cCCcceeEEeccCCcEEEEecccCcccccee--------------------------------------
Confidence 88999999 6788899999999999999988875443322
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
.+....|.-+.|+|..+.+++ + ++|.|.+||+. ....+.. ..+.|..+.
T Consensus 161 ----------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~------~~~~HsAP~ 211 (673)
T KOG4378|consen 161 ----------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFH------ASEAHSAPC 211 (673)
T ss_pred ----------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccc------hhhhccCCc
Confidence 233445678999997776655 5 99999999998 3333322 257899999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
..|+|+|..+.+|++.+.|..|.+||++..+... ++.. ..+.+.++|+++|.+|++|+. |.
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---~l~y---------------~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---RLTY---------------SHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccc---eeee---------------cCCcceeeecCCceEEEeecCCce
Confidence 9999999887899999999999999999765432 1111 257899999999999999986 99
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 396 (457)
|..||++....++..+..|...+ ++++|-|..
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sV---------------t~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASV---------------TRVAFQPSP 305 (673)
T ss_pred EEEEecccCCCCceEeeecccce---------------eEEEeeecc
Confidence 99999998788999999999875 688887654
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.6e-20 Score=159.73 Aligned_cols=326 Identities=15% Similarity=0.211 Sum_probs=209.6
Q ss_pred CCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 32 ~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
..+|+++.|.++.. .||||+.|..|+||.+...+.. ++ .+.-++...|..|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------~~------~~~V~y~s~Ls~H~--------- 65 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------GG------DMKVEYLSSLSRHT--------- 65 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC------------CC------ceeEEEeecccCCc---------
Confidence 45899999999776 9999999999999999876532 00 01345677788888
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..|+++.| +++|++|++|+.+|.|.+|....-... .....
T Consensus 66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e-------------------------------- 105 (434)
T KOG1009|consen 66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DADTE-------------------------------- 105 (434)
T ss_pred ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cccch--------------------------------
Confidence 88999999 799999999999999999987641110 00000
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+.......++..+.+|...|+.++|+|++.+++++ .|+.+++||+. .++...+ +.+|...
T Consensus 106 ----------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~y 167 (434)
T KOG1009|consen 106 ----------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHY 167 (434)
T ss_pred ----------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------ccccccc
Confidence 000000112222337899999999999999999999 99999999999 6777765 6789999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc-ccccccc--cccCcc-ccee--ccccceEEEEEccCCCeEE
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAA--ESHGSK-SFFT--EIIASISDIKFANDGQHLL 343 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~--~h~~~v~~~~~s~~g~~l~ 343 (457)
+..++|.|-+ +++++-+.|...+.+.+...+...... .++.... +..... ..+. ....-...++|+|+|.+|+
T Consensus 168 vqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 168 VQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred cceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 9999999998 999999999877777776544321111 0111100 000000 0010 0113356789999999998
Q ss_pred EEe-----cC-----cEEEEeccCCCCceeEeeeccccc--cccccccCCCCccccceEEE-cCCCcEEEEEeCCCcEEE
Q 012721 344 SRD-----YM-----NLKLWDIRMDSTPVATFKIHEHLR--PKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 344 s~~-----~~-----~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s~~~dg~i~i 410 (457)
+.. .+ ..++++-..-.++...+....... -..|+.|..-+.+......| -|-+..+|.++. ..|++
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyv 325 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYV 325 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEE
Confidence 642 12 334554332234444433322211 01111111111100011111 133444555665 67999
Q ss_pred EecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 411 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
||.++-+.....-.-|-.+++.++|+++|...+.
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecCCCcEEEE
Confidence 9999986777778899999999999999877665
No 154
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.2e-20 Score=155.08 Aligned_cols=231 Identities=16% Similarity=0.229 Sum_probs=163.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+.|+++..-+ ..|.++++|+.||.|.+||+++-.......+-. ..+|.++
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~-k~~c~v~---------------------------- 93 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIA-KHKCIVA---------------------------- 93 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhcccee-heeeecc----------------------------
Confidence 8899999963 578999999999999999998643111000000 0000000
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
+....+|.-.|.++.|-| |...+.++ .|.++++||.+ ..+....+.+ .+.|+
T Consensus 94 -----------------~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn-TlQ~a~~F~m--------e~~VY 147 (397)
T KOG4283|consen 94 -----------------KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN-TLQEAVDFKM--------EGKVY 147 (397)
T ss_pred -----------------ccCCccceeeeeeeEEeeecCceeecccccceEEEeecc-cceeeEEeec--------Cceee
Confidence 001157888999999998 55566777 99999999999 4444444433 36677
Q ss_pred EEEEecCCc--cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-EEe-c
Q 012721 272 SAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-Y 347 (457)
Q Consensus 272 ~v~~~p~~~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~-~ 347 (457)
+-+++|-.. .++|+|..|-.|++-|+.++... .++.+|...|.++.|+|..++++ +|+ |
T Consensus 148 shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 148 SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----------------HTLSGHRDGVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred hhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----------------eeeccccCceEEEEeccCceeEEEecCCC
Confidence 777777431 58899999999999999998533 23567899999999999988876 555 5
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
|.|++||++....+...+..|....+..-. -.+..-..+..++|+.|+.++++.+.|.++++|+..+|+.
T Consensus 211 g~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 211 GAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 999999998655677777766643211110 0111122347899999999999999999999999998853
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.2e-20 Score=155.89 Aligned_cols=308 Identities=15% Similarity=0.200 Sum_probs=203.2
Q ss_pred cCCceEEEEECC-----CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 31 DVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 31 h~~~V~~~~~s~-----~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
|..+|..++|++ .-..+||.+.+ .+.||+....... ..+......
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i------------------------r~lq~y~D~----- 86 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI------------------------RLLQSYADE----- 86 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce------------------------eeeeeccCC-----
Confidence 788999999985 33567777754 7999998754321 111121111
Q ss_pred ccccccccCcEEEEEEEecCC--CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
++++.-..++|+-..+ +.++|.++.-|.|++.|+..+++...
T Consensus 87 -----d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------------------------- 130 (385)
T KOG1034|consen 87 -----DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------------------------- 130 (385)
T ss_pred -----CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------------------
Confidence 1225677778854322 45788888999999999988765432
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
+ .+|...|+.+.++|+. ++++++ .|..|++|+++ ...++.++ .
T Consensus 131 -----------------------------~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----G 175 (385)
T KOG1034|consen 131 -----------------------------Y-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----G 175 (385)
T ss_pred -----------------------------e-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----c
Confidence 1 6899999999999964 677788 99999999999 77888776 3
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc--cccc-cc--ccCcc------cceeccccce
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRDA-AE--SHGSK------SFFTEIIASI 330 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~--~~~~-~~--~~~~~------~~~~~h~~~v 330 (457)
-+++|.+.|.++.|+++| .+|++++.|..|++|++...+.-...... +... .. -|..+ .+-.-|...|
T Consensus 176 G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 478999999999999999 89999999999999999854221110011 0000 00 00000 1234677888
Q ss_pred EEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccC--CCCccccceEEEcCCCcEEEEEeCCCc
Q 012721 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN--NDSIFDKFECSVSGDGLHFATGSYSNL 407 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~s~~~dg~ 407 (457)
.|+.|- |.++++-+ ++.|..|....-.+.+......+.....+..+.- .+.+| ...+|.|-+++||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf--irf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF--IRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE--EEEeecHHHHHHhhccCCCc
Confidence 888887 68888854 5999999872112222222222222111111111 11122 34566677899999999999
Q ss_pred EEEEecCCCCcee-eEE--ecCCCcceeeeeccCCcceec
Q 012721 408 LRIFSHGVGSAGG-ITV--EAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 408 i~iw~~~~~~~~~-~~~--~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|++||+++.+... .++ ......|+..+|+-|++...-
T Consensus 331 v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEE
Confidence 9999999875532 222 233567899999999876543
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=8.2e-20 Score=166.00 Aligned_cols=276 Identities=14% Similarity=0.184 Sum_probs=202.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (457)
.|..++|.|||..|+.+..+ .+.|||...+.. +.++++|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~l---------------------------lqtLKgHK------------ 53 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTL---------------------------LQPLKGHK------------ 53 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccc---------------------------cccccccc------------
Confidence 89999999999888777644 699999988764 46899999
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+.|++++| +.+|+.|++|+.|+.|.+|+-.- .-+..+.....+.+++|++.+..+.....
T Consensus 54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsL--------------- 113 (1081)
T KOG1538|consen 54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSL--------------- 113 (1081)
T ss_pred ceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcch---------------
Confidence 88999999 79999999999999999998543 33455566666778888876654443222
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
+..-+|..+.+...+ ......|.+++|..||++++.| .||+|.+-+-. ..+...+- ...+..++|.+
T Consensus 114 sdFglWS~~qK~V~K------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~-----Rpgg~Nspiws 181 (1081)
T KOG1538|consen 114 SDFGLWSPEQKSVSK------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE-----RPGGSNSPIWS 181 (1081)
T ss_pred hhccccChhhhhHHh------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe-----CCCCCCCCceE
Confidence 123345443221111 2234578899999999999999 99999998765 44444431 23567789999
Q ss_pred EEEecCCc----cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ec
Q 012721 273 AEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY 347 (457)
Q Consensus 273 v~~~p~~~----~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~ 347 (457)
++|+|..+ ..+++..-..++.+|.+.... +.+ .+.+. -.-.|+.+.++|+|+..| ++
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk-~r~L~----------------FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGK-DRALN----------------FDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEeccee-ecc-cccCC----------------CCchhheeccCCcEEEEccCC
Confidence 99999642 367777777888888775532 110 01111 234688999999999986 46
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+.+.+|--+ +..+.++...+.++ +++...|++++++.|+.||+|.-|++-..
T Consensus 244 k~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 244 KQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred CceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 999999754 66677766656655 78999999999999999999999997643
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.1e-19 Score=144.01 Aligned_cols=282 Identities=14% Similarity=0.157 Sum_probs=188.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
..|.+-+++|.+++|+.|..+|.|.++.+...... +...|....+..+++|+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd----------- 62 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD----------- 62 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC-----------
Confidence 35666789999999999999999999998754321 01122334555678898
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
++|+.++|. + .+|++++ ||.|+-|..+......
T Consensus 63 -gpiy~~~f~---d-~~Lls~g-dG~V~gw~W~E~~es~----------------------------------------- 95 (325)
T KOG0649|consen 63 -GPIYYLAFH---D-DFLLSGG-DGLVYGWEWNEEEESL----------------------------------------- 95 (325)
T ss_pred -CCeeeeeee---h-hheeecc-CceEEEeeehhhhhhc-----------------------------------------
Confidence 999999993 3 3666665 4999999887643210
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
+.-++|.......... -.--.|+++...|..+-++.+ .|+.++-||++ .+...+. +.+|++.+.
T Consensus 96 -~~K~lwe~~~P~~~~~------~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH 160 (325)
T KOG0649|consen 96 -ATKRLWEVKIPMQVDA------VEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVH 160 (325)
T ss_pred -cchhhhhhcCccccCc------ccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceee
Confidence 0122333322111111 112368899999877666666 99999999999 6766655 799999999
Q ss_pred EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEEEEEccCCCeEEEEecCcE
Q 012721 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNL 350 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~~~i 350 (457)
++.-.... ..+++|++||++|+||.++++.. ++++. ......+..|. ..|.+++- +..+|++|....+
T Consensus 161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~----yk~~~~lRp~~g~wigala~--~edWlvCGgGp~l 229 (325)
T KOG0649|consen 161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEP----YKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKL 229 (325)
T ss_pred eeeecccC-cceeecCCCccEEEEecccccee----EEecc----ccChhhcCcccCceeEEEec--cCceEEecCCCce
Confidence 99885554 68999999999999999998755 33332 11112223333 34666655 4779999988999
Q ss_pred EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcc
Q 012721 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 430 (457)
Q Consensus 351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v 430 (457)
.+|+++. .++...+...... ..+.|- ...++++++-+.|.-|.+. | .............
T Consensus 230 slwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~-G-vl~a~ip~~s~~c 288 (325)
T KOG0649|consen 230 SLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN-G-VLQANIPVESTAC 288 (325)
T ss_pred eEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec-c-EEEEeccCCccce
Confidence 9999986 6776666544432 356674 4478888888889999875 3 3444444444344
Q ss_pred eeeeec
Q 012721 431 RKPILQ 436 (457)
Q Consensus 431 ~~~~~~ 436 (457)
.+..++
T Consensus 289 ~s~s~~ 294 (325)
T KOG0649|consen 289 YSASWQ 294 (325)
T ss_pred eeeccc
Confidence 444333
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8.2e-20 Score=151.19 Aligned_cols=271 Identities=13% Similarity=0.210 Sum_probs=179.0
Q ss_pred ccccchhhHHhhhcCCCCCCccccCCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccc
Q 012721 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (457)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
..+...|.++...+. |.+.|..+.|.+ -|+.+|+++.|++++||.-......
T Consensus 43 ~~~s~~W~~Ts~Wra--------h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~------------------ 96 (361)
T KOG2445|consen 43 TSDSGTWSCTSSWRA--------HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE------------------ 96 (361)
T ss_pred cCCCCceEEeeeEEe--------cCCcEEEEEecCccccceEEEEecCCceeeeeecccccc------------------
Confidence 345566777776666 999999999987 5899999999999999985422210
Q ss_pred cCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (457)
Q Consensus 86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 165 (457)
.....+...+++.... ..|++|.|.|..-|-.+++++.||.+|||+.-+---
T Consensus 97 ~~~~~Wv~~ttl~Dsr------------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n---------------- 148 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSR------------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN---------------- 148 (361)
T ss_pred cccceeEEEEEeecCC------------cceeEEEecchhcceEEEEeccCcEEEEEecCCccc----------------
Confidence 0001333444555555 789999999888899999999999999998654211
Q ss_pred eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEeCC----
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSADD---- 238 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~d---- 238 (457)
+.-|.+..+. +.+......+..+..|+.|+| ...+|+.|.|
T Consensus 149 ------------------------------Ls~W~Lq~Ei--~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~ 196 (361)
T KOG2445|consen 149 ------------------------------LSQWTLQHEI--QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP 196 (361)
T ss_pred ------------------------------cccchhhhhh--hhccCCcccccCcceEEeeccccccCceEEEEcccCCc
Confidence 1122221110 000001134667788999987 3567888844
Q ss_pred --CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc---cEEEEEccCCeEEEEEccCCeeeccccccccc-
Q 012721 239 --LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCDHSARILRD- 312 (457)
Q Consensus 239 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~- 312 (457)
+.++||.....+.....+ .++.+|..+|++++|.|+-+ .+||+++.|| |+||.++..............
T Consensus 197 ~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~ 271 (361)
T KOG2445|consen 197 HLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPD 271 (361)
T ss_pred cccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCC
Confidence 489999887555333222 35779999999999999642 4899999999 999999853211000000000
Q ss_pred -ccccc-CcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCC--CCceeEeeecc
Q 012721 313 -AAESH-GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD--STPVATFKIHE 369 (457)
Q Consensus 313 -~~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~--~~~~~~~~~~~ 369 (457)
-.+.+ .....+.+|++.|+.+.|+-.|..|++.+ ||.|++|..... .++...+....
T Consensus 272 ~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 272 LMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccC
Confidence 00001 11234788999999999999999999755 599999987532 23444444433
No 159
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=170.07 Aligned_cols=240 Identities=17% Similarity=0.241 Sum_probs=176.0
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
+...|.+++.. +.+|++|+.+++|.+|....++.. ..+...+
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~---------------------------~iL~Rft--------- 96 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED---------------------------TILARFT--------- 96 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc---------------------------ceeeeee---------
Confidence 78888888887 569999999999999999877642 1122222
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
-++.+++| +.+|++++.||.|-.|++-++.+...+..
T Consensus 97 ---lp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~-------------------------------------- 133 (933)
T KOG1274|consen 97 ---LPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKV-------------------------------------- 133 (933)
T ss_pred ---ccceEEEE--ecCCcEEEeecCceeEEEEeccccchhee--------------------------------------
Confidence 57899999 78999999999999999999887654332
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC-CCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTE 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~ 268 (457)
+.+|..+|.++.|+|++++||++ .||.|++||+. .+.....+..-...... ...
T Consensus 134 -----------------------lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~ 189 (933)
T KOG1274|consen 134 -----------------------LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEFILSR 189 (933)
T ss_pred -----------------------ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCCccccccccc
Confidence 27899999999999999999999 99999999999 55554443211111111 245
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~ 347 (457)
.+..++|+|++ ..++..+.|+.|++|+....... ..+.. ..+...+..++|+|+|+|||+++ +
T Consensus 190 i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~----f~Lr~-----------~~~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 190 ICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQ----FKLRD-----------KLSSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred eeeeeeecCCC-CeEEeeccCCeEEEEccCCceeh----eeecc-----------cccccceEEEEEcCCCcEEeeeccC
Confidence 67789999998 77788889999999998887543 22222 12234599999999999999987 4
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw 411 (457)
|.|.|||.++ ...|.... .|.+++|.|+..-|-.-...|...+|
T Consensus 254 g~I~vWnv~t-------~~~~~~~~-------------~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 254 GQILVWNVDT-------HERHEFKR-------------AVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CcEEEEeccc-------chhccccc-------------eeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999974 11132211 12578899987766554444444444
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.4e-19 Score=148.59 Aligned_cols=260 Identities=18% Similarity=0.209 Sum_probs=179.6
Q ss_pred ccCCceEEEEECC-CCCEEEEEeCC-------CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cC
Q 012721 30 QDVDIVSAIEFDK-TGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SH 100 (457)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~latg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h 100 (457)
.|.+.|+.++-+| +..+|+|+..+ -.+.||.+...... +.....+++..+. .+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldtea 122 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTEA 122 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHHH
Confidence 3789999999999 45677776432 23779998654321 1111222333333 22
Q ss_pred CccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-EEEeecCCCceeeeeeccccccccccCCC
Q 012721 101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (457)
Q Consensus 101 ~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (457)
- +.|.|+.|. |++..+++-. |..|.+|++..+... .......
T Consensus 123 v------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~---------------------- 165 (370)
T KOG1007|consen 123 V------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE---------------------- 165 (370)
T ss_pred h------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecccc----------------------
Confidence 2 689999995 6777777766 788999999887542 1111000
Q ss_pred CCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEeCCCeEEEEEcCCCcceeeeee
Q 012721 180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVD 257 (457)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 257 (457)
..++....++-+|+| +++.+++..|+++..||+++..+...+
T Consensus 166 ----------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI-- 209 (370)
T KOG1007|consen 166 ----------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI-- 209 (370)
T ss_pred ----------------------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch--
Confidence 034666788889998 888998889999999999966555544
Q ss_pred cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
-..|...+..+.|+|+...+|++|+.||.|++||.|+-+.. ...+.+|.-.|+++.|+|
T Consensus 210 -----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p----------------v~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 210 -----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP----------------VQELPGHSHWVWAVRFNP 268 (370)
T ss_pred -----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc----------------ccccCCCceEEEEEEecC
Confidence 35688889999999998678999999999999999985421 122467889999999999
Q ss_pred C-CCeEEEE-ecCcEEEEeccCCC-C---------------------------ceeEeeeccccccccccccCCCCcccc
Q 012721 338 D-GQHLLSR-DYMNLKLWDIRMDS-T---------------------------PVATFKIHEHLRPKLCDLYNNDSIFDK 387 (457)
Q Consensus 338 ~-g~~l~s~-~~~~i~~wd~~~~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (457)
. .++|+++ +|..|.+|....-. + .+.++..|+. .|
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED---------------SV 333 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED---------------SV 333 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc---------------ce
Confidence 6 4556665 56899999764311 1 1112222322 23
Q ss_pred ceEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 012721 388 FECSVSG-DGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 388 ~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
++++||. |.-.+|+-++||++.|=++...
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 7999986 5667788999999988776543
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.3e-19 Score=153.33 Aligned_cols=235 Identities=15% Similarity=0.224 Sum_probs=164.1
Q ss_pred eeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (457)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (457)
.+.||. ++|..++|+| .+.+.||+||.|.+|.||.+..+.......
T Consensus 76 ~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------------- 121 (472)
T KOG0303|consen 76 LVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLT--------------------- 121 (472)
T ss_pred CccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcc---------------------
Confidence 467788 9999999997 556799999999999999988764432211
Q ss_pred cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCccee
Q 012721 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF 253 (457)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (457)
.++..+ .+|...|-.++|+|. .+.|+++ .|..|.+||+.+....+
T Consensus 122 --------------------------------epvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali 168 (472)
T KOG0303|consen 122 --------------------------------EPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI 168 (472)
T ss_pred --------------------------------cceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee
Confidence 223333 799999999999995 4566666 99999999999544444
Q ss_pred eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEE
Q 012721 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISD 332 (457)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~ 332 (457)
. +. |.+.|++++|+.+| .+|++.+.|..|||||.++++..... .+|. ..-..
T Consensus 169 ~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-----------------~~heG~k~~R 221 (472)
T KOG0303|consen 169 T--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-----------------VAHEGAKPAR 221 (472)
T ss_pred e--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-----------------ccccCCCcce
Confidence 3 33 99999999999999 99999999999999999998654211 1122 23456
Q ss_pred EEEccCCCeEEEE----ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCCCc
Q 012721 333 IKFANDGQHLLSR----DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNL 407 (457)
Q Consensus 333 ~~~s~~g~~l~s~----~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~ 407 (457)
+.|-.+|.++.+| ++..+-+||...-.+++........ ..+ .---|.+|...|+ +|-.|+.
T Consensus 222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGv-------------l~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGV-------------LLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred eEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-Cce-------------EEeeecCCCCEEEEEecCCcc
Confidence 6788888866666 3488999998654444332222211 111 2344567766665 4567999
Q ss_pred EEEEecCCCCceeeEEec--CCCcceeeeeccC
Q 012721 408 LRIFSHGVGSAGGITVEA--GKNENRKPILQAA 438 (457)
Q Consensus 408 i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~p~ 438 (457)
|+.|.+.+....+.-+.. ...|-+.+.|-|-
T Consensus 288 IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 288 IRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eEEEEecCCCceeEEecccccCCcccccccccc
Confidence 999999987433443332 2445555655553
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.5e-19 Score=148.43 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=148.9
Q ss_pred cCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcce--eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC
Q 012721 215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (457)
Q Consensus 215 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 290 (457)
..+..+++++.|+. +-++|.++ -|-+..|||++. +.. +++ .+-.|...|..|+|...+...||+.+.||
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~-~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET-GVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADG 219 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEee-ccccceee------EEEecCcceeEEEeccCccceEEEecCCC
Confidence 45677999999986 67788888 999999999994 322 221 36789999999999998778999999999
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEE-ec-CcEEEEeccCCCCceeEeee
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DY-MNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~-~~-~~i~~wd~~~~~~~~~~~~~ 367 (457)
.+|+||+|..+.. .++-. .+.. ..+...++|++. -+|+|+- -+ ..|.+.|++.+..++..+++
T Consensus 220 SvRmFDLR~leHS----TIIYE---~p~~-------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~ 285 (364)
T KOG0290|consen 220 SVRMFDLRSLEHS----TIIYE---DPSP-------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN 285 (364)
T ss_pred cEEEEEecccccc----eEEec---CCCC-------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence 9999999985432 33322 1111 357888999875 4677763 44 89999999998999999999
Q ss_pred ccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCc----eeeEEecCCCcceeeeeccCCcce
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRAR 442 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~ 442 (457)
|...+ ..++|.|. ...|+++++|..+.+||++.... .....-...+.|+.+.|+|..|.-
T Consensus 286 H~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 286 HQASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred Ccccc---------------cceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence 99877 58999997 57899999999999999986422 111222357889999999887754
Q ss_pred e
Q 012721 443 R 443 (457)
Q Consensus 443 ~ 443 (457)
.
T Consensus 351 i 351 (364)
T KOG0290|consen 351 I 351 (364)
T ss_pred E
Confidence 3
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9.1e-21 Score=182.46 Aligned_cols=263 Identities=14% Similarity=0.226 Sum_probs=193.9
Q ss_pred CCCCccccCCceEEEEECCCCCE----EEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc
Q 012721 24 NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS 99 (457)
Q Consensus 24 ~~~~~~~h~~~V~~~~~s~~~~~----latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (457)
.+...++-...-+.++|.+.|.. ||.|..||.|.+|+....... .+...+.++..
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~---------------------~~~~~la~~~~ 114 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN---------------------ASEEVLATKSK 114 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC---------------------cchHHHhhhcc
Confidence 34445556778899999997755 899999999999998753110 13346667777
Q ss_pred CCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCC
Q 012721 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (457)
Q Consensus 100 h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (457)
|. +.|..+.|.+ ..+++|++|+.||.|.|||+.+-+.-....
T Consensus 115 h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~------------------------- 156 (1049)
T KOG0307|consen 115 HT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG------------------------- 156 (1049)
T ss_pred cC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC-------------------------
Confidence 88 9999999953 335599999999999999998732111000
Q ss_pred CCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeee
Q 012721 180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVD 257 (457)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (457)
...-...|.+++|+.. ...|+++ .+|.+.|||++.....+..-
T Consensus 157 ----------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls- 201 (1049)
T KOG0307|consen 157 ----------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS- 201 (1049)
T ss_pred ----------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-
Confidence 0234568999999875 4556667 88999999999544444321
Q ss_pred cCCCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE
Q 012721 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (457)
Q Consensus 258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 334 (457)
.......+..++|+|+....|++++.|. .|.+||+|.-.. ..+ .+.+|...|.++.
T Consensus 202 -----~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k-------------~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 202 -----DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLK-------------ILEGHQRGILSLS 260 (1049)
T ss_pred -----cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chh-------------hhcccccceeeec
Confidence 1222245788999999978888888664 699999987421 112 2456889999999
Q ss_pred EccCC-CeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEE
Q 012721 335 FANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIF 411 (457)
Q Consensus 335 ~s~~g-~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw 411 (457)
|++.+ ++|+++ .|+.|.+|+.++ ++.+..+....+++ +.+.|+|... .++.++.||.|.|+
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheeccceeee
Confidence 99976 677765 479999999987 88888887766654 6899999755 88889999999999
Q ss_pred ecCCCC
Q 012721 412 SHGVGS 417 (457)
Q Consensus 412 ~~~~~~ 417 (457)
.+.+..
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 998763
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.9e-19 Score=169.47 Aligned_cols=302 Identities=12% Similarity=0.169 Sum_probs=206.0
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
..-..+.|+|-...+++++..-.|+|||.+.++. +..|..+...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---------------------------l~~F~n~~~~--------- 1108 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---------------------------LNGFDNGAFP--------- 1108 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCce---------------------------eccccCCCCC---------
Confidence 3567889999889999998777899999987764 2333333321
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec-c--cceeEEEeecCCC--------ceeeeeeccccccccccCCCCC
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-D--QKVKKIKEMDHFP--------FVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~-~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
...|+.+.+....|..++++|+.||.|+||+-. + ++...+.....-. .-+-+.|....|.++.++.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence 167999999866777899999999999999733 2 2222221111000 0011222222222222211
Q ss_pred ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-CCCCEEEEe-CCCeEEEEEcCCCcc--eeeeee
Q 012721 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQ--CFNIVD 257 (457)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~ 257 (457)
...|++||.+.+.....+. .+....|+++.-+ ..|+.+++| .||.|++||.+.... .+..
T Consensus 1186 -----------~r~IRIWDa~~E~~~~diP---~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-- 1249 (1387)
T KOG1517|consen 1186 -----------VRSIRIWDAHKEQVVADIP---YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-- 1249 (1387)
T ss_pred -----------eeEEEEEecccceeEeecc---cCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee--
Confidence 2389999998654333332 4455667777654 357999999 999999999985433 2222
Q ss_pred cCCCcccCCCCc--eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 258 MKPSNMDDLTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 258 ~~~~~~~~~~~~--i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
...|+.. |..+.+.+.|-..|++|+.||.|++||++... ......+... ....+.++++..
T Consensus 1250 -----~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-----------~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1250 -----YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-----------WEYGSALTALTV 1312 (1387)
T ss_pred -----ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-----------cccCccceeeee
Confidence 4668777 99999999884569999999999999999842 1111111110 001235899999
Q ss_pred ccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 336 ANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 336 s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
++....+|+|+.+.|+||++. ++.+..++.+.. +....+..+.+++|+|..-.+|+|+.|.+|.||....
T Consensus 1313 H~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~--------F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1313 HEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPG--------FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ccCCCeeeecCcceEEEEecC--hhhhcccccCcc--------cccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 999999999988999999995 677666664433 3334555568999999999999999999999999876
Q ss_pred C
Q 012721 416 G 416 (457)
Q Consensus 416 ~ 416 (457)
+
T Consensus 1383 ~ 1383 (1387)
T KOG1517|consen 1383 P 1383 (1387)
T ss_pred c
Confidence 5
No 165
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-20 Score=166.91 Aligned_cols=282 Identities=14% Similarity=0.155 Sum_probs=193.7
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
....|.+.|++++|.|....|++++.||+|++|+++.... +.....+.+.+|++|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-------------------s~~~~~epi~tfraH~----- 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-------------------SAEKDVEPILTFRAHE----- 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-------------------ccccceeeeEEEeccc-----
Confidence 3445999999999999999999999999999999943221 1222567888999999
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
++|.|+++ ..++.++++|+.||+|+.|++.... -..-. .+.
T Consensus 345 -------gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds--------------~dp--------------- 385 (577)
T KOG0642|consen 345 -------GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDS--------------YDP--------------- 385 (577)
T ss_pred -------CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccccc--------------cCc---------------
Confidence 99999999 7899999999999999999876211 00000 000
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
..+...+.||.+.|+.+++++....|+++ .||++++|+.. .... .++.. .+.
T Consensus 386 ---------------------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~-~~~~-~~f~~----~~e 438 (577)
T KOG0642|consen 386 ---------------------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT-EESP-CTFGE----PKE 438 (577)
T ss_pred ---------------------chhccceeccccceeeeeecccccceeeecCCceEEeeccC-CcCc-cccCC----ccc
Confidence 01111127999999999999988899999 99999999987 3333 22211 122
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
| +..+++.+-...+..+++...-+.--++++..... ..++.. ...+.. .-...+..+.++|.+.+.+++
T Consensus 439 ~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s-~~~~~~-----~~~~~in~vVs~~~~~~~~~~ 507 (577)
T KOG0642|consen 439 H-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFES-SASPGP-----RRYPQINKVVSHPTADITFTA 507 (577)
T ss_pred c-CCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccc-cCCCcc-----cccCccceEEecCCCCeeEec
Confidence 2 33456666544312222222223333333333221 123322 111100 002457788899999888887
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
-+ +.|+++|..+ ++++.....|...+ +++++.|+|.+|++++.|+++++|.+... .+.....
T Consensus 508 hed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es~ 570 (577)
T KOG0642|consen 508 HEDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLEST 570 (577)
T ss_pred ccCCceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccch-heeeccc
Confidence 64 9999999986 89998888888765 79999999999999999999999999766 4444444
Q ss_pred cC
Q 012721 425 AG 426 (457)
Q Consensus 425 ~~ 426 (457)
.|
T Consensus 571 ~~ 572 (577)
T KOG0642|consen 571 AH 572 (577)
T ss_pred cc
Confidence 44
No 166
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.6e-19 Score=151.44 Aligned_cols=299 Identities=12% Similarity=0.071 Sum_probs=204.4
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
.+.|++-|.++.||.++++||+|+.|..+++|.++..-.. ...+++ .+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~---------------------k~~KPI-~~~~~~------ 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR---------------------KTPKPI-GVMEHP------ 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh---------------------cCCCCc-eeccCc------
Confidence 4569999999999999999999999999999998753221 000112 233333
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
|...|.|++| ...+..+++|..+++|.+.|+++.+.+.+...
T Consensus 104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-------------------------------- 145 (609)
T KOG4227|consen 104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE-------------------------------- 145 (609)
T ss_pred ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc--------------------------------
Confidence 2277999999 56777899999999999999998765443211
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
....+.|+.+..+|-.+.|++. .++.|.+||.+........+- +...
T Consensus 146 ---------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~ 193 (609)
T KOG4227|consen 146 ---------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANS 193 (609)
T ss_pred ---------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCC
Confidence 2345589999999988888888 999999999984332333221 2334
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
......+.|+|..+.+|++.+..+-+.+||++..+...-....+.. +......-.++.|+|+|..+.+--
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----------L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----------LPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----------CcccchhhhheeeCCCCCeehhhh
Confidence 4667889999999899999999999999999875422100011111 011112346788999998877654
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---------
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--------- 416 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~--------- 416 (457)
- ..-.+||+-....++..+. |.... |- .++.+-+++|..|-. +++|+.+=.|++|.+...
T Consensus 264 R~~~P~~~D~~S~R~~V~k~D-~N~~G------Y~--N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~I 333 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRCFVLKSD-HNPNG------YC--NIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQI 333 (609)
T ss_pred ccCCCEEeeeecccceeEecc-CCCCc------ce--eeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcccc
Confidence 3 4445678764222333332 22110 00 112225788876644 999999999999998542
Q ss_pred -------------CceeeEEecCCCcceeeeeccCCcceec
Q 012721 417 -------------SAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 417 -------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+....++.||.+-++.|.|+|..-+..+
T Consensus 334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S 374 (609)
T KOG4227|consen 334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS 374 (609)
T ss_pred CcchhhCchhheecceeEEEecccccccceeecCCcceEec
Confidence 1235678999999999999998877665
No 167
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=7.1e-18 Score=152.96 Aligned_cols=258 Identities=10% Similarity=0.084 Sum_probs=160.5
Q ss_pred cCCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 31 DVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
+...+.+++|+|+++.+ ++++.++.|++||..+++. +..+..+.
T Consensus 29 ~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~-------- 73 (300)
T TIGR03866 29 VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---------------------------IGTLPSGP-------- 73 (300)
T ss_pred CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---------------------------EEeccCCC--------
Confidence 34457889999999876 5677889999999887653 22333332
Q ss_pred ccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.+..+.| +++++.+++ ++.|+.|++||+.+++....... ...+..++|.+....++....
T Consensus 74 -----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~---------- 134 (300)
T TIGR03866 74 -----DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSE---------- 134 (300)
T ss_pred -----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEec----------
Confidence 2456778 678877655 45689999999988765444332 122334444432222211111
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
....+.+|+.+.. +..... .......+++|+|+++.|++ + .++.|++||++ .++....+..........
T Consensus 135 ---~~~~~~~~d~~~~---~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 135 ---TTNMAHFIDTKTY---EIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPGVHPE 205 (300)
T ss_pred ---CCCeEEEEeCCCC---eEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC-cceeeeeeeecccccccc
Confidence 0113455665432 222211 12234577999999998854 4 69999999998 455444332111000111
Q ss_pred CCceEEEEEecCCccEE-EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 267 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
......++|+|++ +++ ++...++.+.+||+++++.. .... +...+.+++|+|+|++|+++
T Consensus 206 ~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 206 AVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLL--------------VGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred cCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEE--------------eCCCcceEEECCCCCEEEEE
Confidence 1234568899999 664 44456778999999876543 1111 12468899999999999876
Q ss_pred e--cCcEEEEeccCCCCceeEeeecccc
Q 012721 346 D--YMNLKLWDIRMDSTPVATFKIHEHL 371 (457)
Q Consensus 346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~ 371 (457)
. ++.|++||++. ++.+..+.....+
T Consensus 267 ~~~~~~i~v~d~~~-~~~~~~~~~~~~~ 293 (300)
T TIGR03866 267 NGVSNDVSVIDVAA-LKVIKSIKVGRLP 293 (300)
T ss_pred cCCCCeEEEEECCC-CcEEEEEEccccc
Confidence 3 49999999986 7888888765443
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=156.79 Aligned_cols=206 Identities=18% Similarity=0.249 Sum_probs=158.0
Q ss_pred cccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|++.|.+++|+.+- +.||+|+.|.+|++||+.+++. ..++..|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p---------------------------~~s~~~~~------ 286 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP---------------------------KSSITHHG------ 286 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc---------------------------ceehhhcC------
Confidence 3599999999999854 7899999999999999998873 45666677
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.|.++.|+| .....|++|+.|++|.+.|.+.....
T Consensus 287 ------k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D~R~~~~s------------------------------------- 322 (463)
T KOG0270|consen 287 ------KKVQTLEWHP-YEPSVLLSGSYDGTVALKDCRDPSNS------------------------------------- 322 (463)
T ss_pred ------CceeEEEecC-CCceEEEeccccceEEeeeccCcccc-------------------------------------
Confidence 8899999985 56779999999999999998852110
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
-+-| ...+.|-.++|.|... .++++ .||.|+-+|++..++++.. ++.
T Consensus 323 --------~~~w----------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-------~~A 371 (463)
T KOG0270|consen 323 --------GKEW----------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-------LKA 371 (463)
T ss_pred --------CceE----------------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-------EEe
Confidence 0011 1234688899988554 45566 9999999999977776654 688
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-E
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S 344 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s 344 (457)
|.+.|.++++++.-+.++++++.|+.|++|++..........+.+.. +...|.++.|+-.+++ .
T Consensus 372 Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~---------------~rl~c~~~~~~~a~~la~ 436 (463)
T KOG0270|consen 372 HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL---------------GRLHCFALDPDVAFTLAF 436 (463)
T ss_pred ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc---------------cceeecccCCCcceEEEe
Confidence 99999999999988889999999999999998765432222222322 4467778888765554 4
Q ss_pred Eec-CcEEEEeccC
Q 012721 345 RDY-MNLKLWDIRM 357 (457)
Q Consensus 345 ~~~-~~i~~wd~~~ 357 (457)
|+. +.+++||+.+
T Consensus 437 GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 437 GGEKAVLRVWDIFT 450 (463)
T ss_pred cCccceEEEeeccc
Confidence 554 7899999965
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.4e-19 Score=153.58 Aligned_cols=229 Identities=16% Similarity=0.265 Sum_probs=175.4
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
++|++|.| +|...++++++.|+++++|.++......+...
T Consensus 214 ~~I~sv~F--Hp~~plllvaG~d~~lrifqvDGk~N~~lqS~-------------------------------------- 253 (514)
T KOG2055|consen 214 GGITSVQF--HPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-------------------------------------- 253 (514)
T ss_pred CCceEEEe--cCCCceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence 78999999 57788999999999999999876533222111
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC-Cce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i 270 (457)
.-...+|.+++|.|+|. .++++ ....++.||+. ..+..++- .+.++. ..+
T Consensus 254 ---------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~~-----~~~g~e~~~~ 306 (514)
T KOG2055|consen 254 ---------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKLK-----PPYGVEEKSM 306 (514)
T ss_pred ---------------------eeccCccceeeecCCCceEEEecccceEEEEeecc-cccccccc-----CCCCcccchh
Confidence 12345899999999998 77777 89999999998 44443331 122332 356
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ecCc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~ 349 (457)
.....++++ ++|+..+..|.|.+....+++.+ ..++. .+.|..++|+.+++.|++. ++|.
T Consensus 307 e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 307 ERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred heeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCce
Confidence 778889999 99999999999999999988655 44444 4689999999999888765 5699
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC-----CceeeEEe
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITVE 424 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~ 424 (457)
|.+||++. ..++..+........ ++++.++++.|||+|+..|.|.|||.++- -+++..+.
T Consensus 368 V~v~nl~~-~~~~~rf~D~G~v~g--------------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 368 VYVWNLRQ-NSCLHRFVDDGSVHG--------------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred EEEEecCC-cceEEEEeecCccce--------------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 99999986 677877775544322 68999999999999999999999996542 24455566
Q ss_pred cCCCcceeeeeccCCccee
Q 012721 425 AGKNENRKPILQAAPRARR 443 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~~ 443 (457)
.-...|+.+.|+||....+
T Consensus 433 NLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILA 451 (514)
T ss_pred hhheeeeeeeeCcchhhhh
Confidence 6677899999999976544
No 170
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=144.98 Aligned_cols=237 Identities=16% Similarity=0.236 Sum_probs=167.7
Q ss_pred EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (457)
-.++.| ++.|.+||+|+.||.|.+||+.+.....+
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~------------------------------------------- 60 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM------------------------------------------- 60 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence 678899 78999999999999999999987543221
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc----ccC-----
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDD----- 265 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~----- 265 (457)
+.+|..+|.+++|+++|+.|+++ .|..|++||+.. +.+.+-+.....- +..
T Consensus 61 ------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rirf~spv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 61 ------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIRFDSPVWGAQWHPRKRNK 121 (405)
T ss_pred ------------------hhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEEccCccceeeeccccCCe
Confidence 26899999999999999999999 999999999984 3343322221100 000
Q ss_pred ------------------------------CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc
Q 012721 266 ------------------------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315 (457)
Q Consensus 266 ------------------------------~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 315 (457)
......+..|++.| ++|++|...|.+.+||..+-++... .++..
T Consensus 122 ~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas-~rits---- 195 (405)
T KOG1273|consen 122 CVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVAS-FRITS---- 195 (405)
T ss_pred EEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeee-eeech----
Confidence 00111223467777 8999999999999999988654311 11111
Q ss_pred ccCcccceeccccceEEEEEccCCCeEEEE-ecCcEEEEeccC---CCC--ceeEeeeccccccccccccCCCCccccce
Q 012721 316 SHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM---DST--PVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (457)
Q Consensus 316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 389 (457)
...|..+.++-.|++|+.. +|..|+.|+++. .++ .+.....-...++++ . -.+
T Consensus 196 -----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~-------~---Wk~ 254 (405)
T KOG1273|consen 196 -----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL-------Q---WKK 254 (405)
T ss_pred -----------heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh-------h---hhh
Confidence 1468889999999999986 569999999852 111 010000001111111 0 147
Q ss_pred EEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCC-CcceeeeeccCCcceec
Q 012721 390 CSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARRS 444 (457)
Q Consensus 390 ~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~ 444 (457)
++||.||.|++.++. -..++||.-..| ..+..+.|.+ .....|.|+|-.|..++
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhheeecccccceeeeee
Confidence 999999999988775 457999999999 8888999988 56788999999888776
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=4.2e-18 Score=139.96 Aligned_cols=224 Identities=17% Similarity=0.285 Sum_probs=159.3
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
+-+.|.|+.|.|++..||+-. |..|.+|+++..... ...+.... +.
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~--------------------------vaev~ss~-------s~ 167 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI--------------------------VAEVLSSE-------SA 167 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch--------------------------heeecccc-------cc
Confidence 567999999999999998866 678999999877641 01111100 01
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
++....++-+|+|..+++.+++.+ |+++..||+++......+.
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~------------------------------------ 210 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE------------------------------------ 210 (370)
T ss_pred cccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh------------------------------------
Confidence 112557788998878898877654 7889999999765432211
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..|...|..+.|+|+.++ |++| +||.|+|||.+.....++. +.+|..
T Consensus 211 ------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e-------l~~HsH 259 (370)
T KOG1007|consen 211 ------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE-------LPGHSH 259 (370)
T ss_pred ------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc-------cCCCce
Confidence 678889999999998665 5667 9999999999966666643 789999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-----ccccccccc-------cccCcccceeccccceEEEEEc
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----SARILRDAA-------ESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~s 336 (457)
.+.++.|+|...++|++|+.|..|.+|....-....+ ...-.+.+. -......++..|...|++++||
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 9999999998878999999999999998765321100 000000000 0001124678999999999999
Q ss_pred cCCCeEEEE-ec-CcEEEEecc
Q 012721 337 NDGQHLLSR-DY-MNLKLWDIR 356 (457)
Q Consensus 337 ~~g~~l~s~-~~-~~i~~wd~~ 356 (457)
.-..++++. +. |++.|=.+.
T Consensus 340 sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cCCCeeEEEeccCceEEeecCC
Confidence 887777654 64 888876653
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=139.46 Aligned_cols=300 Identities=12% Similarity=0.121 Sum_probs=192.2
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|+|+.|..++. |.+|...|.|++|.+.+.... ..++++..
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence 4889999999998775 889999999999999987642 34553321
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc----cccccccCCCCCceec
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA----EKNFMNEHNPPSFAHG 185 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 185 (457)
..|+.+.-. ++ ..+.+-+.|..+.+|++..+....+.... ++++.|..- ++... ......
T Consensus 57 ----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~----~nslgFCrfSl~~~~k~~-----eqll~y 120 (323)
T KOG0322|consen 57 ----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIV----VNSLGFCRFSLVKKPKNS-----EQLLEY 120 (323)
T ss_pred ----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeee----ccccccccceeccCCCcc-----hhheec
Confidence 567777764 33 57899999999999999886655443321 122222210 00000 000001
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCC--EEEEe-CCCeEEEEEcCCCcceeeeeecCC-
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP- 260 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~- 260 (457)
++...+ .+.+-|.-...+.+.......+..+.+.|..+.- ++. ++++| .+|.+.+||+......++.-...+
T Consensus 121 p~rgsd---e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv 197 (323)
T KOG0322|consen 121 PSRGSD---ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV 197 (323)
T ss_pred CCcccc---hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc
Confidence 111000 0111111111111100001134556777777532 333 45567 999999999995433322211000
Q ss_pred -CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721 261 -SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (457)
Q Consensus 261 -~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 339 (457)
.....|..++.++.+.+.- ..=++|+.+..+..|.+.-.......... ..-.+..|..+..-||+
T Consensus 198 ~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e-------------~~lknpGv~gvrIRpD~ 263 (323)
T KOG0322|consen 198 ESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKE-------------ITLKNPGVSGVRIRPDG 263 (323)
T ss_pred ccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccce-------------EEecCCCccceEEccCC
Confidence 1245788999999999865 66678888888999988653111100001 11113578899999999
Q ss_pred CeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 340 ~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
+.+|+++ |+.||+|+.++ ..++..++.|...+ .+++|+||...+|+++.|++|.+|++
T Consensus 264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence 9999987 69999999997 89999999999766 69999999999999999999999997
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=1.8e-17 Score=155.44 Aligned_cols=287 Identities=17% Similarity=0.211 Sum_probs=186.1
Q ss_pred cchhhHHhhhcCCCCCCccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCC
Q 012721 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (457)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (457)
-.-|.++.. ..|...+.-...|.|++|+| +..+||.|+.+|.|.+||+..+....
T Consensus 224 ~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------------- 279 (555)
T KOG1587|consen 224 LLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------------- 279 (555)
T ss_pred EEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------
Confidence 344666653 23555555678999999999 56888999999999999998776420
Q ss_pred ccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeecc
Q 012721 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLL 168 (457)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~ 168 (457)
....-.....|. .+|+.+.|..+..+.-|++++.||.|..|+++.-.. .........
T Consensus 280 ~s~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~---------- 337 (555)
T KOG1587|consen 280 PSGLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK---------- 337 (555)
T ss_pred CcccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc----------
Confidence 000111223344 899999998766667799999999999997654321 110000000
Q ss_pred ccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEc
Q 012721 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNL 246 (457)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~ 246 (457)
..+... ......+++++|.+ +-..++.| .+|.|.-=+.
T Consensus 338 --------------------------------------~~~~~~--~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 338 --------------------------------------KHKGQQ--SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred --------------------------------------cccccc--cccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 000000 12234678899977 55677888 9999988444
Q ss_pred CCCcceeeeeecCC-CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721 247 EISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (457)
Q Consensus 247 ~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (457)
......... -.+. ..+..|.+.|+++.++|-+...+++++ |-+++||....... ....+ ..
T Consensus 378 ~g~~~~~~~-~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~---Pl~~~-------------~~ 439 (555)
T KOG1587|consen 378 KGYTPAPEV-SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS---PLLSL-------------DS 439 (555)
T ss_pred cCCcccccc-cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC---cchhh-------------hh
Confidence 311111100 0011 135668899999999999956666666 99999998763211 11122 22
Q ss_pred cccceEEEEEccCCCeE-EEEec-CcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 326 IIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 326 h~~~v~~~~~s~~g~~l-~s~~~-~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
+...|++++|||...-+ +++++ |.|.+||+... ..++.+........ +.+.|++.|+.|++|
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavG 504 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVG 504 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccc---------------ceeecCCCCcEEEEe
Confidence 34569999999976554 45554 99999999642 34444444442221 578899999999999
Q ss_pred eCCCcEEEEecCCC
Q 012721 403 SYSNLLRIFSHGVG 416 (457)
Q Consensus 403 ~~dg~i~iw~~~~~ 416 (457)
...|.+++|++...
T Consensus 505 d~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 505 DANGTTHILKLSES 518 (555)
T ss_pred cCCCcEEEEEcCch
Confidence 99999999999754
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.6e-19 Score=167.95 Aligned_cols=265 Identities=16% Similarity=0.205 Sum_probs=196.3
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
.+.|..+|+|+.|...|.++++|+.|..++||..++.. ++....||.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------------~lAs~rGhs------ 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------------CLASCRGHS------ 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh---------------------------hhccCCCCc------
Confidence 45699999999999999999999999999999988766 567889999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.|+.++. +.++.++++++.|..|++|.+.++..+.+
T Consensus 233 ------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv----------------------------------- 269 (1113)
T KOG0644|consen 233 ------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV----------------------------------- 269 (1113)
T ss_pred ------cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH-----------------------------------
Confidence 88999999 67777899999999999999998865433
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
+.+|++.|++++|+|-. .++.||++++||.+ -. . ..+...|..+.+ .
T Consensus 270 --------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~-~-~~y~prp~~~~~-~ 316 (1113)
T KOG0644|consen 270 --------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LE-P-RIYVPRPLKFTE-K 316 (1113)
T ss_pred --------------------------HhccccceeeeccCccc---cCCCCCceEecccc-cc-c-cccCCCCCCccc-c
Confidence 27999999999999965 33499999999988 11 1 112122222222 2
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEE-
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR- 345 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~- 345 (457)
..+.++.|...+ .-+++++.|+.-..|.+.... +.. ..+.-+.++.+- .+.+++
T Consensus 317 ~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~--------~~~---------------~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 317 DLVDSILFENNG-DRFLTGSRDGEARNHEFEQLA--------WRS---------------NLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred cceeeeeccccc-cccccccCCcccccchhhHhh--------hhc---------------cceEEEeccccccccceeee
Confidence 456677788888 889999999998888766521 111 122223333232 344444
Q ss_pred ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
.+-.+++|++.. +.+++...+|...+ +-+.++|= .....+++.||...|||+-.|-.......
T Consensus 373 ~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~ 436 (1113)
T KOG0644|consen 373 NDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI 436 (1113)
T ss_pred eeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence 458899999975 88888888888765 57889984 55666899999999999998855555555
Q ss_pred cCCCcceeeeeccCCcce
Q 012721 425 AGKNENRKPILQAAPRAR 442 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~ 442 (457)
+| +.+..-+|+++|...
T Consensus 437 gh-~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 437 GH-GKLVDGKFSQDGTSI 453 (1113)
T ss_pred cc-ceeeccccCCCCceE
Confidence 64 445555688886544
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1.8e-18 Score=156.54 Aligned_cols=224 Identities=16% Similarity=0.216 Sum_probs=157.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|+.+.|.| -|...|+.++.||.|++|.+..+......
T Consensus 628 t~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~---------------------------------------- 666 (1012)
T KOG1445|consen 628 TLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENE---------------------------------------- 666 (1012)
T ss_pred ceeeecccCC-CChHHeeecccCceEEEEEeccCCCCccc----------------------------------------
Confidence 4599999975 57779999999999999999876432211
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
..+..++ ..|...|+++.|+| ....|+++ +|-+|++||+....... .+.+|.+.|.
T Consensus 667 -------------~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~--------~l~gHtdqIf 724 (1012)
T KOG1445|consen 667 -------------MTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS--------RLVGHTDQIF 724 (1012)
T ss_pred -------------CCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------eeccCcCcee
Confidence 1222222 78999999999999 45677888 99999999999443333 2689999999
Q ss_pred EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-----
Q 012721 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----- 346 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----- 346 (457)
.++|+|+| +.+++.+.||+|++|+.++++.. +.++ .++. ...--.+.|..+|+++++.+
T Consensus 725 ~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~p-----v~Eg--~gpv--------gtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 725 GIAWSPDG-RRIATVCKDGTLRVYEPRSREQP-----VYEG--KGPV--------GTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred EEEECCCC-cceeeeecCceEEEeCCCCCCCc-----cccC--CCCc--------cCcceeEEEEecCcEEEEecccccc
Confidence 99999999 99999999999999999987532 2222 1110 12345678889999988532
Q ss_pred cCcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 347 YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 347 ~~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
...|.+||...- ..++.+......... .--.+.+|. -.+++|-.|..|++|.+-..+..+..+.
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~--------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~ 854 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDVAPSP--------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA 854 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecccCcc--------------ccccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence 278999998642 244444332221110 112445564 4667888899999999876655555555
Q ss_pred cCCCcc
Q 012721 425 AGKNEN 430 (457)
Q Consensus 425 ~~~~~v 430 (457)
.|..++
T Consensus 855 ~f~sp~ 860 (1012)
T KOG1445|consen 855 PFMSPV 860 (1012)
T ss_pred cccCCC
Confidence 555443
No 176
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=5.3e-18 Score=152.48 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=184.8
Q ss_pred ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (457)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (457)
.+...++||+ +.|.+|.. .+.|..|++|+.||+|++|.+.+|.++....+ ...|.+++|.+...
T Consensus 391 ~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 391 RCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSD 454 (733)
T ss_pred eeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCC
Confidence 4555678888 89999999 68999999999999999999999988766543 33566666665433
Q ss_pred cccc-cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-----CCCeEEEEE
Q 012721 172 NFMN-EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWN 245 (457)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd 245 (457)
..+- .+.... -++.+.. .+ ..+.--+....|+++ -++.+..|.
T Consensus 455 ~~vLAvA~~~~-~~ivnp~-------------------------~G-----~~~e~~~t~ell~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 455 LCVLAVAVGEC-VLIVNPI-------------------------FG-----DRLEVGPTKELLASAPNESEPDAAVVTWS 503 (733)
T ss_pred ceeEEEEecCc-eEEeCcc-------------------------cc-----chhhhcchhhhhhcCCCccCCcccceeec
Confidence 2211 111000 0000000 00 000000111222221 345566665
Q ss_pred cCCCcce---eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeeccccccccccccccCc
Q 012721 246 LEISDQC---FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGS 319 (457)
Q Consensus 246 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
-....+. +.+ .-.|...|..+.|+..| .+|++...+ ..|.|+++...+.. ..|
T Consensus 504 ~~~~~e~~~~v~~-------~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~PF--------- 562 (733)
T KOG0650|consen 504 RASLDELEKGVCI-------VIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SPF--------- 562 (733)
T ss_pred hhhhhhhccceEE-------EEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cch---------
Confidence 4311111 111 23477889999999999 999988654 56888888775422 111
Q ss_pred ccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE
Q 012721 320 KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (457)
Q Consensus 320 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 399 (457)
....+.|.++.|+|...+|+.++...|++||+.. ..+++.+......+ ..++.+|.|.-|
T Consensus 563 ----~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi---------------S~msihp~GDnl 622 (733)
T KOG0650|consen 563 ----RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI---------------SSMSIHPNGDNL 622 (733)
T ss_pred ----hhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee---------------eeeeecCCCCeE
Confidence 2224679999999999999999999999999975 66666665554444 479999999999
Q ss_pred EEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccc
Q 012721 400 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 400 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 446 (457)
+.|+.|+.+..+|+.-+.+..+++.-|...+++|+||+.-|..++|.
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence 99999999999999988788999999999999999999999988854
No 177
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.4e-17 Score=157.21 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=146.0
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+.+.+| +|+|+.|+.++.+ ..|.+||+.+++...+...
T Consensus 204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~----------------------------------- 246 (429)
T PRK01742 204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF----------------------------------- 246 (429)
T ss_pred CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----------------------------------
Confidence 67899999 7899999887643 4699999987754332110
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEE--EcCCCcceeeeeecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+| ...++|+|||+.|+.+ .++.+.|| |+. .+...+ +..+
T Consensus 247 ------------------------~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~ 290 (429)
T PRK01742 247 ------------------------RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSG 290 (429)
T ss_pred ------------------------CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccC
Confidence 222 2367999999988875 57766555 554 333332 3445
Q ss_pred CCceEEEEEecCCccEEEE-EccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 267 TEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~-~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
...+..+.|+|+| +.|+. +..+|...||++...... ...+. +.. ..+.|+|+|++|+..
T Consensus 291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~---~~~l~--------------~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGG---ASLVG--------------GRG--YSAQISADGKTLVMI 350 (429)
T ss_pred CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCC---eEEec--------------CCC--CCccCCCCCCEEEEE
Confidence 5667889999999 65554 446788899987643211 01111 112 357899999999877
Q ss_pred ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC--CCCceeeEE
Q 012721 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITV 423 (457)
Q Consensus 346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~--~~~~~~~~~ 423 (457)
+...+.+||+.. ++.. .+...... ..+.|+|||++|++++.++.+.+|.+. +| .....+
T Consensus 351 ~~~~i~~~Dl~~-g~~~-~lt~~~~~----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l 411 (429)
T PRK01742 351 NGDNVVKQDLTS-GSTE-VLSSTFLD----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARL 411 (429)
T ss_pred cCCCEEEEECCC-CCeE-EecCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEc
Confidence 655667799875 4432 22211111 368899999999999999998888863 45 567778
Q ss_pred ecCCCcceeeeeccCC
Q 012721 424 EAGKNENRKPILQAAP 439 (457)
Q Consensus 424 ~~~~~~v~~~~~~p~~ 439 (457)
.+|.+.+..++|+|-.
T Consensus 412 ~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 412 PGSDGQVKFPAWSPYL 427 (429)
T ss_pred cCCCCCCCCcccCCCC
Confidence 8899999999999863
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.7e-17 Score=142.00 Aligned_cols=212 Identities=13% Similarity=0.128 Sum_probs=160.2
Q ss_pred CccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..-+|+++|..++|+| +...||+|+.|.+|.||++..+... .+-.+++..|.||.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~---- 131 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ---- 131 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc----
Confidence 3446999999999999 6688999999999999998766542 23446788999999
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|..|+|+|.. .+.|++++.|.+|.+|++.+|+....
T Consensus 132 --------rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~--------------------------------- 169 (472)
T KOG0303|consen 132 --------RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALIT--------------------------------- 169 (472)
T ss_pred --------eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeee---------------------------------
Confidence 889999998744 45899999999999999999875533
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
..|.+.|++++|+.||.+|++. .|+.|+|||.+ .+..+.. -.
T Consensus 170 -----------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~ 212 (472)
T KOG0303|consen 170 -----------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GV 212 (472)
T ss_pred -----------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------cc
Confidence 2488899999999999999998 99999999999 5555543 23
Q ss_pred CCCC-ceEEEEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 265 DLTE-VITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 265 ~~~~-~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
+|.+ ....+-|-.+| .++.+|. .+..+-+||..+-+... ....++. .+.|.---|.+|..
T Consensus 213 ~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTS 276 (472)
T ss_pred cccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCC
Confidence 3432 34556688888 6555553 57789999987643220 0011111 35677777889888
Q ss_pred eEEEE--ecCcEEEEeccC
Q 012721 341 HLLSR--DYMNLKLWDIRM 357 (457)
Q Consensus 341 ~l~s~--~~~~i~~wd~~~ 357 (457)
++..+ +|+.|+.|.+..
T Consensus 277 ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEEEEecCCcceEEEEecC
Confidence 87754 469999999864
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.7e-17 Score=151.63 Aligned_cols=309 Identities=15% Similarity=0.093 Sum_probs=200.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (457)
Q Consensus 37 ~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (457)
.-.||+|+++++.... ..|+||...+++ +++.+.+|. .++
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~Tg~---------------------------~i~~l~~~~------------a~l 60 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTATGE---------------------------CITSLEDHT------------APL 60 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecchHh---------------------------hhhhccccc------------Ccc
Confidence 4568999998887665 479999999887 456788898 889
Q ss_pred EEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeee--eeccccccccccCCCCCceeccCCccccc
Q 012721 117 NRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--NTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 117 ~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..+.+.|++.. .++.+++.||.|++||...+.+...........+... ++.... ................+....
T Consensus 61 ~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s--~~~~~s~~~~~~~~~~s~~~~ 138 (792)
T KOG1963|consen 61 TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADIS--ANVYVSVEDYSILTTFSKKLS 138 (792)
T ss_pred ceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcc--ceeEeecccceeeeecccccc
Confidence 99999876654 5778999999999999999988877765554332222 111111 000000011111111111112
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 273 (457)
...+-..+.+... ....++.+|.. -.++.+++.|++.+...+..+.+|+.....+..... ..-..|...+++.
T Consensus 139 ~q~~~~~~~t~~~--~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~----~~~~~Htf~~t~~ 211 (792)
T KOG1963|consen 139 KQSSRFVLATFDS--AKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSR----DITVHHTFNITCV 211 (792)
T ss_pred cceeeeEeeeccc--cchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccc----hhhhhhcccceeE
Confidence 2222222221110 01111123322 357888888888888888899999988433111111 1124577779999
Q ss_pred EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEE
Q 012721 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 352 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~ 352 (457)
+++|++ +++|+|..||.|.+|.--..+. .......+.-|...|++++|+++|.+|++|+. +.+-+
T Consensus 212 ~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 212 ALSPNE-RYLAAGDSDGRILVWRDFGSSD-------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred Eecccc-ceEEEeccCCcEEEEecccccc-------------ccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 999999 9999999999999996433111 11112335567789999999999999999986 99999
Q ss_pred EeccCCCCceeEeee-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721 353 WDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (457)
Q Consensus 353 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 427 (457)
|.+.++ + +++-. -... +..+.+|||+.+.+...+|+.|.+-.+.+. ....++++-.
T Consensus 278 Wq~~T~-~--kqfLPRLgs~---------------I~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~ 334 (792)
T KOG1963|consen 278 WQLETG-K--KQFLPRLGSP---------------ILHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIK 334 (792)
T ss_pred EeecCC-C--cccccccCCe---------------eEEEEEcCCCCeEEEEecCceEEEEeccch-hhhhhccCcc
Confidence 999873 3 22221 1222 268999999999999999999999998766 4444444443
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=3.9e-17 Score=136.30 Aligned_cols=258 Identities=12% Similarity=0.165 Sum_probs=188.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.++|+|.+|++|+..+|++.....|.||.....+ .++...+++.|+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd---------- 55 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD---------- 55 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence 4699999999999999999999999999987765 356778889998
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEe-cccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..|+.|.| ++..+.|++++.|..-++|.. ..++......
T Consensus 56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkptlv------------------------------------ 95 (361)
T KOG1523|consen 56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV------------------------------------ 95 (361)
T ss_pred --cceeEEee--cCCCCceeEccCCCCccccccCCCCeecccee------------------------------------
Confidence 88999999 678889999999999999998 5555543322
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
+ ..++..++++.|+|+++.|++| .-..|.||-++ .+...-+- .+.-+.+...
T Consensus 96 ----------------------L-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E-~ENdWWVs---KhikkPirSt 148 (361)
T KOG1523|consen 96 ----------------------L-LRINRAATCVKWSPKENKFAVGSGARLISVCYYE-QENDWWVS---KHIKKPIRST 148 (361)
T ss_pred ----------------------E-EEeccceeeEeecCcCceEEeccCccEEEEEEEe-cccceehh---hhhCCccccc
Confidence 1 4567789999999999999999 88999999888 33332110 0113456788
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCc
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~ 349 (457)
|++++|+|++ -+|+.|+.|+..+++..--.. .+. -|..
T Consensus 149 v~sldWhpnn-VLlaaGs~D~k~rVfSayIK~--------Vde-----------------------kpap---------- 186 (361)
T KOG1523|consen 149 VTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKG--------VDE-----------------------KPAP---------- 186 (361)
T ss_pred eeeeeccCCc-ceecccccCcceeEEEEeeec--------ccc-----------------------CCCC----------
Confidence 9999999998 999999999999998754321 111 0100
Q ss_pred EEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721 350 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 350 i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
.-|+-+++ ++++.++....+.+ ..+.|+|+|..|+-.+.|+.+.+=|.....+..+......-
T Consensus 187 -~pWgsk~PFG~lm~E~~~~ggwv---------------h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~l 250 (361)
T KOG1523|consen 187 -TPWGSKMPFGQLMSEASSSGGWV---------------HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQL 250 (361)
T ss_pred -CCCccCCcHHHHHHhhccCCCce---------------eeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccC
Confidence 02333221 33444443333333 57889999999999999999988887766444555544457
Q ss_pred cceeeeeccCCcceeccccc
Q 012721 429 ENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 429 ~v~~~~~~p~~~~~~~~~~~ 448 (457)
|..++.|-.+......|.++
T Consensus 251 P~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 251 PLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred CceeeEeecCCceeecCCCC
Confidence 77777777766666666554
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=2.4e-15 Score=137.86 Aligned_cols=259 Identities=11% Similarity=0.113 Sum_probs=150.2
Q ss_pred CcEEEEEEEecCCCCEEEEee-CCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 114 EKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
+....+++ +|++++|++++ .++.|.+|++. ++..............+.+++.+....++....
T Consensus 35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------------- 99 (330)
T PRK11028 35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------------- 99 (330)
T ss_pred CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc-------------
Confidence 34667888 78998887664 57889999997 344433322222223344444433222222111
Q ss_pred cccceEEEeccCccc-cccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 192 ENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
.++.+.+|+++.... ...+... .+.....+++++|++++++++ .++.|.+||++..+...... ....... ...
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~-~g~ 175 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV-EGA 175 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC-CCC
Confidence 145788888863211 1122211 223346778899999988665 78999999998433221100 0000011 123
Q ss_pred ceEEEEEecCCccEEEEEcc-CCeEEEEEccCC--eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~-dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
....+.|+|+| ++++++.. ++.|.+||+... +.. ....+.. .+.. . .+......+.++|+|++++++
T Consensus 176 ~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~--~~~~~~~---~p~~---~-~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 176 GPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIE--CVQTLDM---MPAD---F-SDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEE--EEEEEec---CCCc---C-CCCccceeEEECCCCCEEEEe
Confidence 45789999999 77776665 899999999742 211 0111111 0000 0 011234468999999999987
Q ss_pred e--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecC
Q 012721 346 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 414 (457)
Q Consensus 346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~ 414 (457)
. ++.|.+|++...+..+. +..+..... ....+.++|||++|++++. +++|.+|+++
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~------------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLS-FEGHQPTET------------QPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEE-EeEEEeccc------------cCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 5 38999999965332222 222211000 0047999999999998776 8999999885
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=2.3e-15 Score=143.44 Aligned_cols=268 Identities=23% Similarity=0.389 Sum_probs=195.4
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|...|.++.|.+.+..++.++.|+.+.+|+...... .+..+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~----- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD----- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence 456899999999999999999999999999999886641 2334444330
Q ss_pred ccccccCcEEEEEEEecCCCC-EEEEeeC-CCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~-~l~s~s~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..+..+.+. .+++. .++..+. |+.+.+|+... ......
T Consensus 110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------------------------- 150 (466)
T COG2319 110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT-------------------------------- 150 (466)
T ss_pred ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------------------------
Confidence 246777775 56666 4555444 99999999987 322221
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
...|...|..++|+|++..++++ . |+.+++|++. .......
T Consensus 151 -----------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------- 193 (466)
T COG2319 151 -----------------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLST------- 193 (466)
T ss_pred -----------------------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEe-------
Confidence 15788899999999999988887 5 9999999998 4444443
Q ss_pred ccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 263 MDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
+.+|...+.+++|+|++ . .+++++.|+.|++||...+..... . +.+|.... -..|+|++.+
T Consensus 194 ~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~-------------~~~~~~~~-~~~~~~~~~~ 255 (466)
T COG2319 194 LAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---T-------------LSGHSDSV-VSSFSPDGSL 255 (466)
T ss_pred eccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---e-------------cCCCCcce-eEeECCCCCE
Confidence 45689999999999998 6 555559999999998875543210 1 23344443 3389999988
Q ss_pred EEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (457)
Q Consensus 342 l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 420 (457)
+++++ ++.+++|++......+..+..|...+ .++.|+|++..+++++.|+.+.+|++.+.. ..
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 319 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LL 319 (466)
T ss_pred EEEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eE
Confidence 88665 49999999986333244444454433 578999998888889999999999988873 33
Q ss_pred eEE--ecCCCcceeeeec
Q 012721 421 ITV--EAGKNENRKPILQ 436 (457)
Q Consensus 421 ~~~--~~~~~~v~~~~~~ 436 (457)
... ..|...+..+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 320 SSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred EEeeecccCCceEEEEEC
Confidence 333 4788888999883
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=1.8e-16 Score=136.44 Aligned_cols=268 Identities=16% Similarity=0.261 Sum_probs=174.8
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
-+|+.+|+++.|+|+|++||+|+.+|.|.+|....-... .+.. ..+...+.+.....+.+|.
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~----~~d~-------e~~~~ke~w~v~k~lr~h~------- 123 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF----DADT-------EADLNKEKWVVKKVLRGHR------- 123 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----cccc-------hhhhCccceEEEEEecccc-------
Confidence 359999999999999999999999999999997642110 0000 0001223566777888998
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|..++| ++++.++++++.|.++++||+..|......
T Consensus 124 -----~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~----------------------------------- 161 (434)
T KOG1009|consen 124 -----DDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHAGQLLAIL----------------------------------- 161 (434)
T ss_pred -----cchhhhhc--cCCCceeeeeeccceEEEEEeccceeEeec-----------------------------------
Confidence 77999999 789999999999999999999998776542
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeee---cCCCccc
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD---MKPSNMD 264 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~---~~~~~~~ 264 (457)
.+|...+..++|.|-++++++= .|...+.+.+.. .+....+. +......
T Consensus 162 --------------------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~ 214 (434)
T KOG1009|consen 162 --------------------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFN 214 (434)
T ss_pred --------------------------cccccccceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccC
Confidence 5788889999999988888885 676666666552 22111111 1100000
Q ss_pred C---------C----CCceEEEEEecCCccEEEEEcc----CCeE-----EEEEccCCeeeccccccccccccccCcccc
Q 012721 265 D---------L----TEVITSAEFHPIYCNLLAYSSS----RGFV-----RLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 265 ~---------~----~~~i~~v~~~p~~~~~l~~~~~----dg~i-----~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
+ | ......++|+|+| .++++.+. .+.+ ++|+-.. ...... .
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~---l~rP~~-------------~ 277 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKD---LKRPAA-------------R 277 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeecccc---ccCcee-------------e
Confidence 0 1 1234567899999 88877642 2222 2332211 111001 1
Q ss_pred eeccccceEEEEEcc------------------CCCeEEEEecCcEEEEeccCCCCceeEee-eccccccccccccCCCC
Q 012721 323 FTEIIASISDIKFAN------------------DGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDS 383 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~------------------~g~~l~s~~~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 383 (457)
+.....++..+.|+| -+..+|.++.+.|++||.++ ..++.... .|-..+
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~-~~P~~~v~nihy~~i----------- 345 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT-LEPLAVVDNIHYSAI----------- 345 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-ccceEEEeeeeeeee-----------
Confidence 111122334444443 23345567779999999976 55555433 354443
Q ss_pred ccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 384 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 384 ~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
++++|++||.+|+..+.||...+--+...
T Consensus 346 ----TDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 346 ----TDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ----cceeecCCCcEEEEeccCCceEEEEEcch
Confidence 79999999999999999998877776655
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=147.06 Aligned_cols=207 Identities=16% Similarity=0.268 Sum_probs=158.5
Q ss_pred CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEec
Q 012721 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (457)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s 124 (457)
..|+.++.||.+.|.+-...- ......|. +.|.+-.| +
T Consensus 76 d~~~i~s~DGkf~il~k~~rV----------------------------E~sv~AH~------------~A~~~gRW--~ 113 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV----------------------------ERSISAHA------------AAISSGRW--S 113 (737)
T ss_pred ceEEEEcCCceEEEecccchh----------------------------hhhhhhhh------------hhhhhccc--C
Confidence 567888899999888754332 23566777 88999999 7
Q ss_pred CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (457)
Q Consensus 125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 204 (457)
++|.-|+++++||.|++|.-.......
T Consensus 114 ~dGtgLlt~GEDG~iKiWSrsGMLRSt----------------------------------------------------- 140 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWSRSGMLRST----------------------------------------------------- 140 (737)
T ss_pred CCCceeeeecCCceEEEEeccchHHHH-----------------------------------------------------
Confidence 999999999999999999865431110
Q ss_pred cccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (457)
Q Consensus 205 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 284 (457)
+.....+|+|++|.|+.+.++.|..+.+.|=-+......++ ++.|.+-|.++.|++.. ++++
T Consensus 141 ---------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~~W~~~s-~lI~ 202 (737)
T KOG1524|consen 141 ---------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSLSWSTQS-NIIA 202 (737)
T ss_pred ---------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEeecCccc-ccee
Confidence 12345589999999999999999777777766663344333 68999999999999998 9999
Q ss_pred EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeE
Q 012721 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 364 (457)
Q Consensus 285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~ 364 (457)
+|++|-..++||-... ..|.. ..|.-+|++++|.|+ +.++.++.+++++=..+
T Consensus 203 sgGED~kfKvWD~~G~-------~Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~-------- 255 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQGA-------NLFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPR-------- 255 (737)
T ss_pred ecCCceeEEeecccCc-------ccccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCC--------
Confidence 9999999999998764 23333 346679999999999 67777776666621111
Q ss_pred eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i 410 (457)
.+. |+.++||+||..++.|+..|.+.+
T Consensus 256 ----~GS---------------ifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 256 ----VGS---------------IFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ----ccc---------------eEEEEEcCCCceeeccccCceEEE
Confidence 111 268999999999999999998755
No 185
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=2.9e-17 Score=143.23 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=171.8
Q ss_pred cccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|..+|.++.|+|. ...+++.+.||+|++-|+++.... .+..+....
T Consensus 231 ~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-------------------------~v~s~~~d~------ 279 (498)
T KOG4328|consen 231 TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-------------------------EVLSLDTDN------ 279 (498)
T ss_pred ccCCccccceEecCCChhheeeeccCceeeeeeecchhhH-------------------------HHhhcCccc------
Confidence 348999999999994 478889999999999999876531 112222111
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
.....+.| +.+...++.+..=|...+||.+++.....
T Consensus 280 ------~~fs~~d~--~~e~~~vl~~~~~G~f~~iD~R~~~s~~~----------------------------------- 316 (498)
T KOG4328|consen 280 ------IWFSSLDF--SAESRSVLFGDNVGNFNVIDLRTDGSEYE----------------------------------- 316 (498)
T ss_pred ------eeeeeccc--cCCCccEEEeecccceEEEEeecCCccch-----------------------------------
Confidence 45667777 45555677777667899999987643211
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceee-eeecCCCccc
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNMD 264 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~ 264 (457)
. +.-|...|.+++++|.. .+|++| .|++++|||++.-..... + ....
T Consensus 317 ------------~-------------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~-----lst~ 366 (498)
T KOG4328|consen 317 ------------N-------------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF-----LSTL 366 (498)
T ss_pred ------------h-------------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc-----eecc
Confidence 0 14577799999999954 567778 999999999983222111 1 1245
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
.|...|.+..|+|.+ -.|++.+.|..|+|||..--........++.. .... .-|. ......|.|+..++++
T Consensus 367 ~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H-n~~t------~Rwl-T~fKA~W~P~~~li~v 437 (498)
T KOG4328|consen 367 PHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH-NNRT------GRWL-TPFKAAWDPDYNLIVV 437 (498)
T ss_pred cccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceeec-cCcc------cccc-cchhheeCCCccEEEE
Confidence 699999999999999 45999999999999998411000011111111 0000 0011 2234679999999999
Q ss_pred Eec-CcEEEEeccCCCCceeEeeeccc-cccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecC
Q 012721 345 RDY-MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG 414 (457)
Q Consensus 345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~ 414 (457)
|.. ..|-++|-.. ++.+..+..... .+. --..|+|-+. +++.++..|.|+||--+
T Consensus 438 g~~~r~IDv~~~~~-~q~v~el~~P~~~tI~--------------~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 438 GRYPRPIDVFDGNG-GQMVCELHDPESSTIP--------------SVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eccCcceeEEcCCC-CEEeeeccCccccccc--------------cceeecccccceeccCCccceEEEEecC
Confidence 987 8899999863 665666544332 221 1368999888 45555567889998654
No 186
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=9.1e-17 Score=134.24 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=172.3
Q ss_pred cccCCceEEEEEC-------CCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc--
Q 012721 29 LQDVDIVSAIEFD-------KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-- 99 (457)
Q Consensus 29 ~~h~~~V~~~~~s-------~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 99 (457)
.+..+.|+..+|- |+..++|+.+.+.-|.+||.-+++.. ..+++
T Consensus 101 ~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr---------------------------aSy~~yd 153 (406)
T KOG2919|consen 101 YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR---------------------------ASYRAYD 153 (406)
T ss_pred eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc---------------------------cchhhhh
Confidence 3456778888885 67789999999999999999988753 22222
Q ss_pred CCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEe-cccceeEEEeecCCCceeeeeeccccccccccCC
Q 012721 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (457)
Q Consensus 100 h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (457)
|..|+ .+-.+++| ++||..|++| ....|+++|+ +.|+.-........
T Consensus 154 h~de~---------taAhsL~F--s~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~-------------------- 201 (406)
T KOG2919|consen 154 HQDEY---------TAAHSLQF--SPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK-------------------- 201 (406)
T ss_pred hHHhh---------hhheeEEe--cCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc--------------------
Confidence 22211 34578999 8999887755 5678999998 44433222110000
Q ss_pred CCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeee
Q 012721 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIV 256 (457)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (457)
+ ..+..+-+.|++|+| +.+.++.| ....+-||.-. ......+
T Consensus 202 ---------~-------------------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~pl~l- 245 (406)
T KOG2919|consen 202 ---------G-------------------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRPLQL- 245 (406)
T ss_pred ---------c-------------------------cccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCceee-
Confidence 0 035567789999999 45588888 88999998877 4555554
Q ss_pred ecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceecccc-ceEEE-
Q 012721 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDI- 333 (457)
Q Consensus 257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~- 333 (457)
+.+|.+.|+.+.|.++| +.|.+|. .|..|..||+|..... +..+.. |.. .-..|
T Consensus 246 ------lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~p---v~~L~r-------------hv~~TNQRI~ 302 (406)
T KOG2919|consen 246 ------LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDP---VYALER-------------HVGDTNQRIL 302 (406)
T ss_pred ------ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccch---hhhhhh-------------hccCccceEE
Confidence 57899999999999999 8888877 5788999999985421 111111 111 11233
Q ss_pred -EEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721 334 -KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 334 -~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
...|++++|++|+ +|.|++||++..+..+..+..+...+ ..++++|--.++|+++..
T Consensus 303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v---------------NgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV---------------NGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccc---------------cceecCcccceeeeccCc
Confidence 4468999999995 69999999987677777777776654 578999987777777653
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.6e-16 Score=144.70 Aligned_cols=302 Identities=15% Similarity=0.208 Sum_probs=207.7
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
.+.|+-.++|.++||+++++|+|..||.|.+|.--..+. .....+.+.-|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------ 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------ 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc------
Confidence 455888899999999999999999999999997433111 112345677787
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.|++++| +++|.+|++|+..+.+.+|.+.+++.+.+
T Consensus 252 ------~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqfL----------------------------------- 288 (792)
T KOG1963|consen 252 ------DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQFL----------------------------------- 288 (792)
T ss_pred ------cccceeEE--ecCCceEeecccceEEEEEeecCCCcccc-----------------------------------
Confidence 77999999 78999999999999999999998863322
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC---Ccc
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP---SNM 263 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~ 263 (457)
..-..+|..+.++||+.+.+.. .|+.|.+...........+-.+++ ..-
T Consensus 289 ---------------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 289 ---------------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK 341 (792)
T ss_pred ---------------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence 3455689999999999999998 999999987742221111111111 011
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
....+-.+.++++|.- +.++..+..|.|.+||+.+.....+ ..+...+.... ...+.-.+++++.+-.|.+++
T Consensus 342 ~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~-----~~n~~v~itav~~~~~gs~ma 414 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDG-----DVNIQVGITAVARSRFGSWMA 414 (792)
T ss_pred ccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCC-----cceeEEeeeeehhhccceEEE
Confidence 2235667888999965 7888899999999999988764421 11111100000 013345688888888899999
Q ss_pred EEe---------c--CcEEEEeccCCCCc---ee-EeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCc
Q 012721 344 SRD---------Y--MNLKLWDIRMDSTP---VA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNL 407 (457)
Q Consensus 344 s~~---------~--~~i~~wd~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~ 407 (457)
+.. + -.+++|......+. .. ....|..... ..+..++... ..++++.||.
T Consensus 415 T~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v--------------at~~~~~~rs~~~vta~~dg~ 480 (792)
T KOG1963|consen 415 TLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV--------------ATIFLNPTRSVRCVTASVDGD 480 (792)
T ss_pred EeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE--------------EEEEecCcccceeEEeccCCe
Confidence 763 1 35788987542221 11 2223444321 2333344433 8999999999
Q ss_pred EEEEecCCC---------CceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721 408 LRIFSHGVG---------SAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 408 i~iw~~~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 449 (457)
++||-+... -.+...-..|..+++..+|+.||...+.|+++.
T Consensus 481 ~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~ 531 (792)
T KOG1963|consen 481 FKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT 531 (792)
T ss_pred EEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCE
Confidence 999998332 234445556899999999999998888876653
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=144.74 Aligned_cols=294 Identities=16% Similarity=0.178 Sum_probs=211.2
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
.-.|.+-|..|.|+..|..|++|+.|..|.+||...+... +.-..||.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~------ 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC------ 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc------
Confidence 3459999999999999999999999999999999877642 22335677
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccc-ceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|..-.|.|..+...+++++.||.+++=.+... .+....
T Consensus 186 ------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~--------------------------------- 226 (559)
T KOG1334|consen 186 ------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK--------------------------------- 226 (559)
T ss_pred ------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecce---------------------------------
Confidence 6788888998888889999999999998765432 221111
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
.+..|.++|..++.-|+. .-|.++ .|+.+.-+|++ .......+..+ +
T Consensus 227 --------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-~~~pa~~~~cr----~ 275 (559)
T KOG1334|consen 227 --------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-QDVPAEKFVCR----E 275 (559)
T ss_pred --------------------------ecccccCccceeeecCCCCCcccccccccceeeeeec-cCCccceeeee----c
Confidence 115788999999998865 446666 99999999998 44333332211 2
Q ss_pred CCCC---ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec--cccccccccccccCcccceeccccceEEEEEccC-
Q 012721 265 DLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--HSARILRDAAESHGSKSFFTEIIASISDIKFAND- 338 (457)
Q Consensus 265 ~~~~---~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~- 338 (457)
.+.. ....++.+|..+..+++|+.|..+++||.+.-.... ..+..|..|+ ......-.|++++|+.+
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h-------l~~d~~v~ITgl~Ysh~~ 348 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH-------LVEDDPVNITGLVYSHDG 348 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc-------ccccCcccceeEEecCCc
Confidence 2222 567889999886799999999999999988642210 0011111100 01112356999999965
Q ss_pred CCeEEEEecCcEEEEeccCC-C----------CceeE-eeeccccccccccccCCCCccccceE-EEcCCCcEEEEEeCC
Q 012721 339 GQHLLSRDYMNLKLWDIRMD-S----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYS 405 (457)
Q Consensus 339 g~~l~s~~~~~i~~wd~~~~-~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~~~d 405 (457)
+.+|++-.|-.|+++.-.+. + ..+.. +++|.+...+ -.+ -|-|...|+++|++-
T Consensus 349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV-------------KgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV-------------KGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred cceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc-------------ceeeeccCccceEEecCcc
Confidence 46666777888999965431 1 12233 7788765421 234 367889999999999
Q ss_pred CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 406 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|.|.||+-.++ +.+..+++....|+|+.-||--|-.++
T Consensus 416 GhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 416 GHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred ceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhc
Confidence 99999999988 778888998889999999999988776
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=6.7e-15 Score=125.47 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=120.3
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc--cCCeEEEEE
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVD 296 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~lwd 296 (457)
.+|.++.++ -+.|+.+-...|+|||++ .-+.+.+++ ....+...+.++++++.+ .+++.-+ ..|.|.+||
T Consensus 88 t~IL~VrmN--r~RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CceEEEEEc--cceEEEEEcccEEEEecc-cceeehhhh----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEE
Confidence 368888886 557888833449999999 444444432 123455667777777776 6887754 468999999
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc-EEEEeccCCCCceeEeeeccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~-i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
..+-+.. . .+..|.+.+.+++|+++|.+||++++ |+ |||+.+.. ++.+.+++.....+
T Consensus 160 ~~nl~~v----~-------------~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~-- 219 (391)
T KOG2110|consen 160 TINLQPV----N-------------TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPV-- 219 (391)
T ss_pred cccceee----e-------------EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceee--
Confidence 8875322 2 24568899999999999999999998 54 69999975 88888887654433
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.+.+++|+||+++|++.+..++|++|.+...
T Consensus 220 -----------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 220 -----------SIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------EEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 2369999999999999999999999999865
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=7e-16 Score=127.15 Aligned_cols=209 Identities=9% Similarity=0.170 Sum_probs=155.3
Q ss_pred ccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
..++..++++..|+. +-++|.+++-|-+..|||++++.. +...++|-+|+
T Consensus 146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------------~~vkTQLIAHD----- 196 (364)
T KOG0290|consen 146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------------GTVKTQLIAHD----- 196 (364)
T ss_pred ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------------cceeeEEEecC-----
Confidence 345788999999998 668999999999999999998742 23456788898
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|..|+|. ...-+.|++.+.||.+|++|++..+...++- +.
T Consensus 197 -------KEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~leHSTIIY-E~----------------------------- 238 (364)
T KOG0290|consen 197 -------KEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSLEHSTIIY-ED----------------------------- 238 (364)
T ss_pred -------cceeEEEec-cCccceEEEecCCCcEEEEEecccccceEEe-cC-----------------------------
Confidence 789999995 2345689999999999999998765433221 10
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..-..+...++|++ |-+++|+ + +...|.|.|++.....+. .+
T Consensus 239 ----------------------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva-------~L 283 (364)
T KOG0290|consen 239 ----------------------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA-------RL 283 (364)
T ss_pred ----------------------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee-------hh
Confidence 11144677889987 4566776 3 678899999995555443 47
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee--eccccccccccccccCcccceeccccceEEEEEcc-CCC
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQ 340 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~ 340 (457)
.+|.+.|..++|.|..+..|++++.|..+.+||+.+.-. ....+..+. -.+.|+.+.|++ .+.
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--------------a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--------------AGGEVNQIQWSSSQPD 349 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--------------ccceeeeeeecccCCC
Confidence 899999999999999888999999999999999987422 111111111 246799999996 467
Q ss_pred eEEEEecCcEEE
Q 012721 341 HLLSRDYMNLKL 352 (457)
Q Consensus 341 ~l~s~~~~~i~~ 352 (457)
.++.+.++++.+
T Consensus 350 wiai~~~kklei 361 (364)
T KOG0290|consen 350 WIAICFGKKLEI 361 (364)
T ss_pred EEEEEecCeeeE
Confidence 888776555443
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=141.58 Aligned_cols=240 Identities=20% Similarity=0.274 Sum_probs=160.1
Q ss_pred CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
+..+|++-|.|++|+.+|.+||+|+.|-.+.|||.-..+. ....-.||.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--------------------------lhsI~TgHt----- 93 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--------------------------LHSISTGHT----- 93 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce--------------------------eeeeecccc-----
Confidence 4566999999999999999999999999999999874443 223346788
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
+.|.++.|.|..++.++++|+.|..|+++|+...+....-. +
T Consensus 94 -------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~----------------~--------------- 135 (758)
T KOG1310|consen 94 -------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH----------------G--------------- 135 (758)
T ss_pred -------cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc----------------C---------------
Confidence 88999999998888899999999999999987532111000 0
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCC--Cc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SN 262 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~ 262 (457)
.......+ ..|...|..++..|++ ..+.++ .||+|+-+|++..-.+-.-.+... .+
T Consensus 136 -------------------~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 136 -------------------MEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred -------------------ccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 00111111 6789999999999988 677777 999999999984332221110000 01
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccccc----Ccccceeccc-----------
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEII----------- 327 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~----------- 327 (457)
+...--...|+..+|..+.+|++|+.|--.++||.+..........++.. ..| ....+..+|.
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccce
Confidence 12222456789999999899999999999999996543211110011110 000 0001111121
Q ss_pred cceEEEEEccCCCeEEEE-ecCcEEEEeccC
Q 012721 328 ASISDIKFANDGQHLLSR-DYMNLKLWDIRM 357 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~ 357 (457)
..++-++|+|+|.-|+.. +...|+++|+..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 225678999999776654 447899999864
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=143.17 Aligned_cols=256 Identities=15% Similarity=0.114 Sum_probs=170.8
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+.|..+.| .+....|++++.|+++++|+++......
T Consensus 295 d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~~s~------------------------------------------ 330 (577)
T KOG0642|consen 295 DCIRALAF--HPSEPVLITASEDGTLKLWNLQKAKKSA------------------------------------------ 330 (577)
T ss_pred hhhhhhhc--CCCCCeEEEeccccchhhhhhcccCCcc------------------------------------------
Confidence 77899999 4566689999999999999994311000
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec--CCCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i 270 (457)
....+++.++ .+|.++|.|+++.++++.+++| .||+|+.|++..........+. -...+.||.+.+
T Consensus 331 ----------~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav 399 (577)
T KOG0642|consen 331 ----------EKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV 399 (577)
T ss_pred ----------ccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccce
Confidence 0111333334 7999999999999999999999 9999999977632222222110 113478999999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cC
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YM 348 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~ 348 (457)
+.+++++.. ..|++++.||++++|+...... .++.. . .. .+.-.++.+-...-.++.++ -+
T Consensus 400 w~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~-~---------~e-~g~Plsvd~~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 400 WLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGE-P---------KE-HGYPLSVDRTSSRPAHSLASFRFG 462 (577)
T ss_pred eeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCC-c---------cc-cCCcceEeeccchhHhhhhhcccc
Confidence 999999998 8899999999999999877543 22322 0 01 12233444433221222222 13
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
.-.++++.. ...+..+....... . . ....+..+.++|.+.+.+++.+|+.|+++|..++ ..+....+|..
T Consensus 463 ~~~~~~~ev-~s~~~~~~s~~~~~--~---~---~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~ 532 (577)
T KOG0642|consen 463 YTSIDDMEV-VSDLLIFESSASPG--P---R---RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSMVAHKD 532 (577)
T ss_pred cccchhhhh-hhheeeccccCCCc--c---c---ccCccceEEecCCCCeeEecccCCceeccccccc-ccchheeeccc
Confidence 333444433 22222222111110 0 0 0011246889999999999999999999999999 78888999999
Q ss_pred cceeeeeccCCcceecccccccccc
Q 012721 429 ENRKPILQAAPRARRSSLSNLTRGL 453 (457)
Q Consensus 429 ~v~~~~~~p~~~~~~~~~~~~~~~~ 453 (457)
.+.++++-|.++-..+ ++.++++
T Consensus 533 svtslai~~ng~~l~s--~s~d~sv 555 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMS--GSHDGSV 555 (577)
T ss_pred eecceeecCCCceEEe--ecCCcee
Confidence 9999999999999998 5555444
No 193
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.3e-14 Score=136.76 Aligned_cols=213 Identities=16% Similarity=0.174 Sum_probs=140.5
Q ss_pred CcEEEEEEEecCCCCEEEEee---CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+...+| +|||+.|+..+ .+..|.+|++.+++...+..
T Consensus 199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------------------------ 240 (429)
T PRK03629 199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------------------------ 240 (429)
T ss_pred CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC------------------------------------
Confidence 56889999 78999888754 34578888888775443211
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
....+...+|+|||+.|+.. .++ .|++||++ .+...++ ..+
T Consensus 241 --------------------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~l--------t~~ 285 (429)
T PRK03629 241 --------------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQV--------TDG 285 (429)
T ss_pred --------------------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEc--------cCC
Confidence 11223467899999988864 344 59999998 4444332 233
Q ss_pred CCceEEEEEecCCccEEEEEcc-CCeEEEE--EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSS-RGFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~-dg~i~lw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
...+....|+|+| +.|+..+. ++...|| |+.+++.. ++ .. +........|+|||++|+
T Consensus 286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~----~l-t~-------------~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQ----RI-TW-------------EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeE----Ee-ec-------------CCCCccCEEECCCCCEEE
Confidence 4456789999999 77766654 4544555 55554321 11 11 123456788999999998
Q ss_pred EEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc---EEEEecCCC
Q 012721 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVG 416 (457)
Q Consensus 344 s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~---i~iw~~~~~ 416 (457)
... + ..|.+||+.. +. ...+...... ....|+|||++|+.++.++. ++++++. |
T Consensus 347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~~----------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G 407 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFLD----------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G 407 (429)
T ss_pred EEEccCCCceEEEEECCC-CC-eEEeCCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECC-C
Confidence 643 2 4688889864 33 3333321111 36889999999999988765 6777774 4
Q ss_pred CceeeEEecCCCcceeeeeccC
Q 012721 417 SAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
.....+.+|.+.+..++|+|-
T Consensus 408 -~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 -RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCeEECccCCCCcCCcccCCC
Confidence 345667788899999999984
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=8.8e-15 Score=142.38 Aligned_cols=295 Identities=16% Similarity=0.216 Sum_probs=183.2
Q ss_pred ccccchhhHHhhhcCCCCCCccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhccccccc
Q 012721 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (457)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (457)
.+++..|+....+-. +...|...|..++.++.. .+++||+.||+|++|++...... +
T Consensus 1028 ~~p~~gW~p~G~lVA----hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~----- 1085 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILVA----HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G----- 1085 (1431)
T ss_pred CCCCCCCCccceEee----hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c-----
Confidence 345556877654333 455588999999988765 99999999999999998754421 0
Q ss_pred CCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeee
Q 012721 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (457)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 166 (457)
..++...++..-. ..+.++..+ ++++.+|.++.||.|++.+++..........
T Consensus 1086 --~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~----------- 1138 (1431)
T KOG1240|consen 1086 --GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVAT----------- 1138 (1431)
T ss_pred --ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccceee-----------
Confidence 0112222222222 678888886 6788999999999999999876321111000
Q ss_pred ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCC-EEEEe-CCCeEEE
Q 012721 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE-TFVSA-DDLRINL 243 (457)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-~l~~~-~d~~i~i 243 (457)
.+++-+. .....-|..-+|.. .+. .++.+ ..+.|..
T Consensus 1139 ----------------------------~~ri~n~-------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1139 ----------------------------QVRIPNL-------------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred ----------------------------eeecccc-------------cCCCceEEeecccccccceeEEEEEeccceEE
Confidence 0111110 11122233334432 233 56677 8999999
Q ss_pred EEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (457)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
||++........ +.....+.|++++.+|.+ +++++|...|.+.+||+|=+... ..|..
T Consensus 1178 ~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~----------- 1235 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH----------- 1235 (1431)
T ss_pred ecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC-----------
Confidence 999844333321 133345789999999999 89999999999999999986543 33332
Q ss_pred eccccceEEEEEccC---CCeEEEE-e-c-CcEEEEeccCCCCceeEeeeccccccccccccCC-----CCccccceEEE
Q 012721 324 TEIIASISDIKFAND---GQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN-----DSIFDKFECSV 392 (457)
Q Consensus 324 ~~h~~~v~~~~~s~~---g~~l~s~-~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~ 392 (457)
.+..++..+..+|- ....+++ . . +.|.+|++.. +.....+....... .+....+. +.......+.+
T Consensus 1236 -P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p-~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1236 -PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAP-ILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred -cccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCc-chhhhcccccCCCCCcccceeeec
Confidence 12356777776653 3455544 3 3 8999999986 55444444331111 11111010 11111234455
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 393 SGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 393 s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
...+.++.+|+.|..|+.||....+
T Consensus 1313 ~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ccCCceeeecCCccceeeccCCCcc
Confidence 5567789999999999999998763
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=6.3e-16 Score=125.72 Aligned_cols=271 Identities=10% Similarity=0.072 Sum_probs=161.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc--
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-- 191 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 191 (457)
+.|+++.| ..+ .+|.++..-|.|++|.+.+.+....+.......+.. ...++++...
T Consensus 15 ~~v~s~~f--qa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~------------------lq~~p~d~l~tq 73 (323)
T KOG0322|consen 15 SSVTSVLF--QAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITN------------------LQSIPNDSLDTQ 73 (323)
T ss_pred chheehhh--ccc-hhhhcccccceEEEEEeecCccchhhhhhccceeec------------------eeecCCcchhhc
Confidence 88999999 344 479999999999999999887665544322221221 2222333322
Q ss_pred -cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-----CC----CEEEE-e-CCCeEEEEEcCCCcceeeeeecC
Q 012721 192 -ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DC----ETFVS-A-DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 192 -~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~----~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
.+..+.+|++....- ...|.-.++++.|++ ++ +.++. + ..-.+.+-|.. ....+++.
T Consensus 74 gRd~~L~lw~ia~s~~-------i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g-~~tqv~i~--- 142 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSAF-------ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG-DTTQVQIA--- 142 (323)
T ss_pred CCCceEEEEEccCcce-------EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC-ccceeEcc---
Confidence 233677787754211 123444455555543 11 11222 1 11112222222 11111111
Q ss_pred CCcccCCCCceEEEEEecC-Cc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 260 PSNMDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~-~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
+..-.+..+.++|..+.-+ +. -+++.|.++|.+.+||+.++........ ..........|..+|.++.|.+
T Consensus 143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-------~~kv~~~~ash~qpvlsldyas 215 (323)
T KOG0322|consen 143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-------SSKVESPNASHKQPVLSLDYAS 215 (323)
T ss_pred CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-------ccccccchhhccCcceeeeech
Confidence 1112334466777775332 21 2667778999999999998743322111 2222334567889999999986
Q ss_pred CCCeEEEEe-cCcEEEEeccCC-CCc-eeE-eee-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 338 DGQHLLSRD-YMNLKLWDIRMD-STP-VAT-FKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 338 ~g~~l~s~~-~~~i~~wd~~~~-~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
.-..=++|+ +..+..|++.-. +.+ +.. ... +.+ |..+.+-||++.+||++.|++|+||.
T Consensus 216 ~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG----------------v~gvrIRpD~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 216 SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG----------------VSGVRIRPDGKILATAGWDHRIRVYS 279 (323)
T ss_pred hhcCCcCCCccccceeeeeccccCcccccceEEecCCC----------------ccceEEccCCcEEeecccCCcEEEEE
Confidence 433334443 367888888632 111 111 111 222 14788999999999999999999999
Q ss_pred cCCCCceeeEEecCCCcceeeeeccCCc
Q 012721 413 HGVGSAGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
.++. ..+.++..|.+.|++++|+|+.+
T Consensus 280 wrtl-~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 280 WRTL-NPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eccC-CchhhhhhhhcceeEEEeCCCCc
Confidence 9999 88999999999999999999943
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=8.5e-14 Score=118.82 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=120.6
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
.+|.+|.+ +-+.|+++-.+. |.|||+.+.+....+...
T Consensus 88 t~IL~Vrm----Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~------------------------------------- 125 (391)
T KOG2110|consen 88 TSILAVRM----NRKRLVVCLEES-IYIYDIKDMKLLHTIETT------------------------------------- 125 (391)
T ss_pred CceEEEEE----ccceEEEEEccc-EEEEecccceeehhhhcc-------------------------------------
Confidence 56899988 344677776655 999999998876554311
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
..+...+.++++++.+.+++. + ..|.|.+||.. .-+.... +..|.+.+
T Consensus 126 ---------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~-------I~aH~~~l 176 (391)
T KOG2110|consen 126 ---------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-NLQPVNT-------INAHKGPL 176 (391)
T ss_pred ---------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-cceeeeE-------EEecCCce
Confidence 235556777888888888887 3 78999999998 4555544 57899999
Q ss_pred EEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721 271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~ 348 (457)
.+++|+++| .+||++|+.|+ |||+.+.+++.....-+-.. ...|.+++|+|++++|++.++ +
T Consensus 177 Aalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---------------~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 177 AALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---------------PVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred eEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCce---------------eeEEEEEEECCCCCeEEEecCCC
Confidence 999999999 99999999987 79999998865421111111 257999999999999998887 9
Q ss_pred cEEEEeccC
Q 012721 349 NLKLWDIRM 357 (457)
Q Consensus 349 ~i~~wd~~~ 357 (457)
+|.+|.++.
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999999864
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.5e-15 Score=143.55 Aligned_cols=217 Identities=11% Similarity=0.074 Sum_probs=144.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..|...+.+.+|||||+.||.++.+ ..|++||+.+++.. .+..+.+|.
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~~---- 250 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGHN---- 250 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCcc----
Confidence 4467789999999999999887643 36999999876531 233344443
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEE--ecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWK--VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
..++| +|||+.|+.++ .+|.+.||. +.++....+
T Consensus 251 -----------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------ 287 (429)
T PRK01742 251 -----------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------ 287 (429)
T ss_pred -----------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEee------------------------------
Confidence 35789 78999888764 678766664 444433221
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
..+...+....|+|||+.|+.+ .++...||+++..+.....
T Consensus 288 --------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----- 330 (429)
T PRK01742 288 --------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----- 330 (429)
T ss_pred --------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-----
Confidence 2344467789999999987754 6788888887643333322
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
+ .+.. ..+.|+|+| +.|++.+.++ +.+||+.+++.. ..... .....+.|+|+|+
T Consensus 331 --l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~----~lt~~---------------~~~~~~~~sPdG~ 384 (429)
T PRK01742 331 --V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE----VLSST---------------FLDESPSISPNGI 384 (429)
T ss_pred --e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE----EecCC---------------CCCCCceECCCCC
Confidence 1 2222 457899999 8888877765 556999886532 11111 1124578999999
Q ss_pred eEEEEec-CcEEEEecc-CCCCceeEeeeccccccccccccCCCCccccceEEEcCC
Q 012721 341 HLLSRDY-MNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (457)
Q Consensus 341 ~l~s~~~-~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 395 (457)
+|+.++. +.+.+|++. ..++....+..|.+.+ ...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence 9998764 767766652 2367777887776543 46888874
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1e-14 Score=137.13 Aligned_cols=256 Identities=12% Similarity=0.100 Sum_probs=173.5
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.++.|+| .+..+++.|+.+|.|.+||+..+.......
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~--------------------------------------- 282 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSG--------------------------------------- 282 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcc---------------------------------------
Confidence 6799999986 556788999999999999998875421100
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc----ccCC
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDL 266 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~ 266 (457)
+......|..+++.+.|..+. .-|+++ .||.|..|+++.-............. -...
T Consensus 283 ----------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 283 ----------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK 346 (555)
T ss_pred ----------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence 000115789999999996533 447777 99999999987433322222111100 0122
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE-EEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSR 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~ 345 (457)
...+++++|.+..+..++.|+++|.|.-=+........ ...++. ...+..|.++|+++.++|=+..+ +++
T Consensus 347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKG-------HSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--cccccc-------cccccccCcceEeeecCCCccceeeee
Confidence 35689999999888899999999988763333221110 011121 23356778999999999976544 456
Q ss_pred ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCC-CceeeEE
Q 012721 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG-SAGGITV 423 (457)
Q Consensus 346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~-~~~~~~~ 423 (457)
+|-+++||.......++..+..+...+ ++++|||.. ..++++..||.|.+||+... ..+....
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred ccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 689999999874466776666555533 799999985 56778888999999998754 2344455
Q ss_pred ecCCCcceeeeeccCCcceecccccc
Q 012721 424 EAGKNENRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 424 ~~~~~~v~~~~~~p~~~~~~~~~~~~ 449 (457)
..+....+.+.|++.++...-|-.++
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCC
Confidence 55567778888888887777655443
No 199
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=5.8e-14 Score=117.50 Aligned_cols=239 Identities=13% Similarity=0.155 Sum_probs=146.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (457)
...+++|+.|..-+++|..+| .+||+++--++. ...+-+...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~---------------------------~~r~~~~~G---------- 48 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES---------------------------ASRQFIDGG---------- 48 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhh---------------------------hhhccccCc----------
Confidence 455699999999999999888 999998754321 011111100
Q ss_pred CcEEEEEEEecCCCCEEE-EeeC------CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 114 EKINRVRWCAAPNGSMFI-LSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~-s~s~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
-.+..+-| ..+ +++ .|+. -+.+.|||=..++ .+.++....+|.+|.+....-.++
T Consensus 49 ~~~veMLf---R~N-~laLVGGg~~pky~pNkviIWDD~k~~--~i~el~f~~~I~~V~l~r~riVvv------------ 110 (346)
T KOG2111|consen 49 FKIVEMLF---RSN-YLALVGGGSRPKYPPNKVIIWDDLKER--CIIELSFNSEIKAVKLRRDRIVVV------------ 110 (346)
T ss_pred hhhhhHhh---hhc-eEEEecCCCCCCCCCceEEEEecccCc--EEEEEEeccceeeEEEcCCeEEEE------------
Confidence 11222223 222 333 3332 2568999943333 344444445555555442211111
Q ss_pred CCccccccceEEEeccCccccc-cceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 187 HLEWTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..+.|.+|......... ++.+ ......+.+++-..+..+||. | .-|.|.|-|+....... +..+
T Consensus 111 -----l~~~I~VytF~~n~k~l~~~et--~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~------p~~I 177 (346)
T KOG2111|consen 111 -----LENKIYVYTFPDNPKLLHVIET--RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA------PSII 177 (346)
T ss_pred -----ecCeEEEEEcCCChhheeeeec--ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC------ceEE
Confidence 12356677665322211 1111 122233444444445555555 5 78999999998433311 1126
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
.+|...|.|++.+-+| .++|++|..|+ |||||..++......-+-.+ ...|.+++|||++.+|
T Consensus 178 ~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---------------~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 178 NAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVD---------------RADIYCIAFSPNSSWL 241 (346)
T ss_pred EcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---------------hheEEEEEeCCCccEE
Confidence 7899999999999999 99999999997 89999999876522111111 2579999999999999
Q ss_pred EEEec-CcEEEEeccC
Q 012721 343 LSRDY-MNLKLWDIRM 357 (457)
Q Consensus 343 ~s~~~-~~i~~wd~~~ 357 (457)
|+++| |++.++.++.
T Consensus 242 avsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCeEEEEEeec
Confidence 99999 9999999864
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=9.1e-15 Score=133.63 Aligned_cols=232 Identities=15% Similarity=0.220 Sum_probs=154.4
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
.|+.++| .|||..|+.+..++ +.+||.++|......
T Consensus 14 ci~d~af--kPDGsqL~lAAg~r-lliyD~ndG~llqtL----------------------------------------- 49 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAAGSR-LLVYDTSDGTLLQPL----------------------------------------- 49 (1081)
T ss_pred chheeEE--CCCCceEEEecCCE-EEEEeCCCccccccc-----------------------------------------
Confidence 4899999 78998888877655 789999988765543
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce-------eeeeecCC------
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-------FNIVDMKP------ 260 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-------~~~~~~~~------ 260 (457)
++|.+.|+|++|+.||+.+++| .|+.|.+|.....+.. ++-....|
T Consensus 50 --------------------KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 50 --------------------KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred --------------------ccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence 4666666666666666666666 6666666655422211 11100000
Q ss_pred --------------Ccc--cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721 261 --------------SNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 261 --------------~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
... ......+.+.+|..|| .+++.|-.+|+|.+-+-...... ++-. ..
T Consensus 110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~----~I~R-----------pg 173 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKV----KIER-----------PG 173 (1081)
T ss_pred hcchhhccccChhhhhHHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcce----EEeC-----------CC
Confidence 001 1223567788899999 99999999999998754332111 1111 12
Q ss_pred ccccceEEEEEccCC-----CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE
Q 012721 325 EIIASISDIKFANDG-----QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 398 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g-----~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 398 (457)
+.+++|++++|+|.. ..++..+. .++.+|.+. ++.+..-+.-. |+-.++.+-++|.|
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~---------------FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGKDRALN---------------FDPCCISYFTNGEY 236 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeecccccCC---------------CCchhheeccCCcE
Confidence 346899999999963 35555554 677777774 44443221111 11147899999999
Q ss_pred EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
++.|+.|+.+++|--+ | ..+-++......++.|..+|++...+.|
T Consensus 237 ~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred EEEccCCCceEEEeec-C-eEEeeccccceeEEEEEEccCCceEEEE
Confidence 9999999999999854 4 5667777788999999999999887764
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.4e-15 Score=131.79 Aligned_cols=200 Identities=16% Similarity=0.225 Sum_probs=140.8
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (457)
Q Consensus 36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (457)
.+++|+.+|..|++|+.||++|||+...... +..+..|. +.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e 188 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE 188 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence 8899999999999999999999999776543 23455566 78
Q ss_pred EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (457)
|.++.| ++||+.|++.+.| ..+||+.+++.......-
T Consensus 189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~---------------------------------------- 225 (398)
T KOG0771|consen 189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP---------------------------------------- 225 (398)
T ss_pred ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC----------------------------------------
Confidence 999999 8999999999999 899999999844322110
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCC---C-EEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---E-TFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~-~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+.......+.|+.++ . ++++. .-+.|..||+...... ..+.. .+.......
T Consensus 226 -------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~--~~~~~~~~s 283 (398)
T KOG0771|consen 226 -------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRL--RKKIKRFKS 283 (398)
T ss_pred -------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccch--hhhhhccCc
Confidence 1112234455665544 2 23332 4566666665422221 11110 112223357
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
|.+++.+++| ++++.|+.||.|.+++..+.+.. ...+ ..|...|+.+.|+|+.+++++-+ +.
T Consensus 284 iSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~----~~vk------------~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 284 ISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRL----QYVK------------EAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred ceeEEEcCCC-cEEEEeccCCcEEEEEeceeeee----Eeeh------------hhheeeeeeEEEcCCcCcccccccCC
Confidence 9999999999 99999999999999999886543 2222 35778999999999999999754 47
Q ss_pred cEEEEecc
Q 012721 349 NLKLWDIR 356 (457)
Q Consensus 349 ~i~~wd~~ 356 (457)
.+.+..+.
T Consensus 347 ~~~v~~l~ 354 (398)
T KOG0771|consen 347 EAAVTKLA 354 (398)
T ss_pred ceeEEEEe
Confidence 77777664
No 202
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=2.8e-13 Score=129.00 Aligned_cols=273 Identities=24% Similarity=0.385 Sum_probs=190.8
Q ss_pred ccccCCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
...|...|.+++|+|++.++++++. ++.+++|+..... .+..+.+|.
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----- 198 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------PLSTLAGHT----- 198 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---------------------------eEEeeccCC-----
Confidence 3458999999999999999999885 9999999988643 345666677
Q ss_pred cccccccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|.+++| ++++. .+++++.|+.|++||...+.....
T Consensus 199 -------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--------------------------------- 236 (466)
T COG2319 199 -------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKLLRS--------------------------------- 236 (466)
T ss_pred -------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcEEee---------------------------------
Confidence 78999999 57776 555559999999997764443321
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
.+.+|.... ...|+|++..++++ .|+.+++|+.......... +.
T Consensus 237 ---------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~ 281 (466)
T COG2319 237 ---------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT-------LS 281 (466)
T ss_pred ---------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-------Ee
Confidence 014555554 33899999888888 9999999999844432322 24
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
+|...+.++.|.|++ ..+++++.|+.+.+||..+..... ... ...|...+..+.|.+++..++.
T Consensus 282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 345 (466)
T COG2319 282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLS----SLT-----------LKGHEGPVSSLSFSPDGSLLVS 345 (466)
T ss_pred cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEE----Eee-----------ecccCCceEEEEECCCCCEEEE
Confidence 678999999999987 777778888999999888764331 111 1234557889988433245555
Q ss_pred E--ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE-EeCCCcEEEEecCCCCceee
Q 012721 345 R--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGI 421 (457)
Q Consensus 345 ~--~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~dg~i~iw~~~~~~~~~~ 421 (457)
+ .++.+.+|+... ............ . ..+.+++ ...++. +..++.+.+|+.... ....
T Consensus 346 ~~~~d~~~~~~~~~~-~~~~~~~~~~~~-~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 406 (466)
T COG2319 346 GGSDDGTIRLWDLRT-GKPLKTLEGHSN-V---------------LSVSFSP-DGRVVSSGSTDGTVRLWDLSTG-SLLR 406 (466)
T ss_pred eecCCCcEEeeecCC-CceeEEecCCce-E---------------EEEEECC-CCCEEEEecCCCceEEEecccC-eeee
Confidence 4 348899999975 332222222221 1 4788888 444444 688999999999988 3333
Q ss_pred EEecCCCcceeeeeccCCcceec
Q 012721 422 TVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 422 ~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
....+...+....+.+++.....
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~ 429 (466)
T COG2319 407 NLDGHTSRVTSLDFSPDGKSLAS 429 (466)
T ss_pred eccCCCCcEEEEEECCCCcEEEE
Confidence 33333377888888888776654
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=3.2e-15 Score=133.23 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=129.6
Q ss_pred cCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (457)
Q Consensus 215 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 293 (457)
..|.+.+.+-.|+|||.-|+++ .||.|++|... +....+ +.....+|.|++|.|+..+.+.+. .+.+.
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRSt-------l~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~ 169 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRST-------VVQNEESIRCARWAPNSNSIVFCQ--GGHIS 169 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHH-------HhhcCceeEEEEECCCCCceEEec--CCeEE
Confidence 6899999999999999999998 99999999865 333222 334557899999999984444443 33444
Q ss_pred EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccc
Q 012721 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 372 (457)
Q Consensus 294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~ 372 (457)
+=.+.... +++ ....|.+-|.++.|++...++++|++ -..++||.. +..+..-..|+.++
T Consensus 170 IKpL~~n~------k~i-----------~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 170 IKPLAANS------KII-----------RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAI 230 (737)
T ss_pred Eeeccccc------cee-----------EEeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccce
Confidence 44333321 222 23668899999999999999999875 999999984 78888888888765
Q ss_pred cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 449 (457)
++++|.|| ..++.++. +++++ .....+.+..++|+|||...+.|-++.
T Consensus 231 ---------------TSva~npd-~~~~v~S~-nt~R~------------~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 231 ---------------TSVAFNPE-KDYLLWSY-NTARF------------SSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred ---------------eeeeeccc-cceeeeee-eeeee------------cCCCccceEEEEEcCCCceeeccccCc
Confidence 89999999 55555554 34442 233456677889999999888876654
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3e-15 Score=133.77 Aligned_cols=249 Identities=13% Similarity=0.124 Sum_probs=160.0
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
...+|.||+ +-|+++.| +.+|.+|++||.|-.+.|||.-..+....+.
T Consensus 42 lE~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~------------------ 89 (758)
T KOG1310|consen 42 LEAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHSIS------------------ 89 (758)
T ss_pred hhhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeeeee------------------
Confidence 345688998 78999999 7999999999999999999988666555443
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCC
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS 249 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~ 249 (457)
.+|...|.++.|-| +.+++++| .|..|++||+...
T Consensus 90 ------------------------------------------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 90 ------------------------------------------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred ------------------------------------------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 78999999999988 56788888 9999999999842
Q ss_pred cceeee--eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721 250 DQCFNI--VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 250 ~~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
..--.- ......-+.-|...|..++..|++++.+.++++||+|+-||++....+....... ..-..+...-
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~-------~~l~ny~~~l 200 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP-------SILVNYNPQL 200 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc-------HHHHHhchhh
Confidence 111000 0000022567888899999999999999999999999999999854332111000 0000001111
Q ss_pred cceEEEEEccCC-CeEEEEe-cCcEEEEeccCCCCceeEeeeccc-------cccccccccC-------CCCccccceEE
Q 012721 328 ASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH-------LRPKLCDLYN-------NDSIFDKFECS 391 (457)
Q Consensus 328 ~~v~~~~~s~~g-~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------~~~~~~v~~~~ 391 (457)
-...++..+|.. .+|+.|+ +--.++||.+...+....-..+.. .+...++..- ..-+.-.+-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 346789999965 5666664 588999996431211111000000 0100000000 00111125688
Q ss_pred EcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721 392 VSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 392 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~ 422 (457)
|+|+|.-|+..-..-.|+++|+..++.....
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 9999876665444457999999988544333
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7.9e-14 Score=118.64 Aligned_cols=268 Identities=14% Similarity=0.120 Sum_probs=168.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.-.+.-++|++.-..+|++..|-.|+||+-..... ..++...+
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p----------------------------t~Lks~sQ--------- 140 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP----------------------------TKLKSVSQ--------- 140 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC----------------------------ceecchhh---------
Confidence 34678899998777788999999999999765322 23333221
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..|++++|-| ..++.|+.|+..| |.+|....-.. ...+...
T Consensus 141 --rnvtclawRP-lsaselavgCr~g-IciW~~s~tln~~r~~~~~---------------------------------- 182 (445)
T KOG2139|consen 141 --RNVTCLAWRP-LSASELAVGCRAG-ICIWSDSRTLNANRNIRMM---------------------------------- 182 (445)
T ss_pred --cceeEEEecc-CCcceeeeeecce-eEEEEcCcccccccccccc----------------------------------
Confidence 5699999965 3345777777766 88998653211 1100000
Q ss_pred ccccceEEEeccCccccccceeec-cCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..-+.+++. .+| .+|+++.|++||..++++ .|..|.|||+. .+..+.+. ....
T Consensus 183 ---------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~-------~~gl 238 (445)
T KOG2139|consen 183 ---------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI-------PKGL 238 (445)
T ss_pred ---------------cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-------ccCC
Confidence 000111110 355 689999999999999997 89999999999 56655442 1234
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
+.+.-+.|+||+ .+|..+.-|+..++|+........ +-.- ..+.|...+|+|+|++|+-...
T Consensus 239 gg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~l--------------gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 239 GGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWIL--------------GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred CceeeEEEcCCC-CEEEEecccceeeeehhcccceec---ceec--------------cCCceeeeeecCCCCEEEEEEc
Confidence 668899999999 999999999999999655432110 1111 1358999999999999987766
Q ss_pred CcEEEEeccCCCCceeEeee-cccccccccccc-------CCCCccccceEEEcCCCcEEEEEeCC--------CcEEEE
Q 012721 348 MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLY-------NNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIF 411 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~s~~~d--------g~i~iw 411 (457)
+.-++|.+...++...-... ....+-...++. +.-+..+..+++|.|.|.+||+.-.. ..|.+|
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f 380 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF 380 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence 77777776543332111100 000000000000 01112233689999999999975443 346777
Q ss_pred ecCCC
Q 012721 412 SHGVG 416 (457)
Q Consensus 412 ~~~~~ 416 (457)
|.+..
T Consensus 381 dtr~s 385 (445)
T KOG2139|consen 381 DTRKS 385 (445)
T ss_pred ccccc
Confidence 77654
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.9e-13 Score=125.39 Aligned_cols=272 Identities=12% Similarity=0.103 Sum_probs=154.3
Q ss_pred EEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccc
Q 012721 130 FILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR 208 (457)
Q Consensus 130 l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 208 (457)
+++...++.|.+|++.+ ++...............+++++ ++..+.... . ..+.+..|+++......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~-----------~-~~~~i~~~~~~~~g~l~ 71 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGV-----------R-PEFRVLSYRIADDGALT 71 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEE-----------C-CCCcEEEEEECCCCceE
Confidence 34457789999999964 4433333322222233333332 222211110 0 23467778776322212
Q ss_pred cceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE-EE
Q 012721 209 CQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AY 285 (457)
Q Consensus 209 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~ 285 (457)
..... ........++++|++++++++ .++.|.+|+++..+....... .+. +.....+++++|++ +++ ++
T Consensus 72 ~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-~~~~~~~~~~~p~g-~~l~v~ 143 (330)
T PRK11028 72 FAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-GLEGCHSANIDPDN-RTLWVP 143 (330)
T ss_pred Eeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-CCCcccEeEeCCCC-CEEEEe
Confidence 22211 122346689999999988887 689999999974332221110 011 22346778899999 666 55
Q ss_pred EccCCeEEEEEccCCeeeccc-cccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCC-CC-
Q 012721 286 SSSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD-ST- 360 (457)
Q Consensus 286 ~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~-~~- 360 (457)
...++.|.+||+.+....... ...... . .......+.|+|+|+++++++ ++.|.+|+++.. ++
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~-----------~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVTT-----------V-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCceec-----------C-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 557799999999763322100 000000 0 013456789999999998775 399999999732 22
Q ss_pred -ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCC---Ccceeeee
Q 012721 361 -PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK---NENRKPIL 435 (457)
Q Consensus 361 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~---~~v~~~~~ 435 (457)
.+..+........ ... ....+.++||+++|+++.. ++.|.+|++...... .++.++. .....+.+
T Consensus 212 ~~~~~~~~~p~~~~-------~~~--~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~ 281 (330)
T PRK11028 212 ECVQTLDMMPADFS-------DTR--WAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNI 281 (330)
T ss_pred EEEEEEecCCCcCC-------CCc--cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEE
Confidence 2222221111000 000 0025889999999998865 789999999754222 2222221 24568899
Q ss_pred ccCCcceec
Q 012721 436 QAAPRARRS 444 (457)
Q Consensus 436 ~p~~~~~~~ 444 (457)
+|++.....
T Consensus 282 ~~dg~~l~v 290 (330)
T PRK11028 282 DHSGKYLIA 290 (330)
T ss_pred CCCCCEEEE
Confidence 999977765
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.7e-13 Score=130.01 Aligned_cols=212 Identities=12% Similarity=0.038 Sum_probs=137.7
Q ss_pred CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+.+.+| +|||+.|+..+. +..|.+||+.+++...+
T Consensus 202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------------------------- 241 (435)
T PRK05137 202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------------------------- 241 (435)
T ss_pred CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence 67999999 789998888753 46899999988765432
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..+.+.+...+|+|||+.|+.. .++ .|++||+. .+...+ +..+
T Consensus 242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~ 288 (435)
T PRK05137 242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS 288 (435)
T ss_pred ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence 2233456678999999987643 444 47778887 444333 3345
Q ss_pred CCceEEEEEecCCccEEEEEc-cCC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~-~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
........|+|+| +.|+..+ .+| .|.+||+..++.. ++.. +...+....|+|+|++|+
T Consensus 289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~--------------~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISF--------------GGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----Eeec--------------CCCcccCeEECCCCCEEE
Confidence 5556778999999 7777665 333 5777887665321 1111 123466788999999998
Q ss_pred EEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC------CcEEEEec
Q 012721 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSH 413 (457)
Q Consensus 344 s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d------g~i~iw~~ 413 (457)
... + ..|.+||+.. .....+.. .... ....|+|||++|+..+.+ ..++++++
T Consensus 350 ~~~~~~~~~~i~~~d~~~--~~~~~lt~-~~~~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDG--SGERILTS-GFLV---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred EEEcCCCceEEEEEECCC--CceEeccC-CCCC---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 653 2 3677888753 33333321 1111 368999999998875543 25788888
Q ss_pred CCCCceeeEEecCCCcceeeeeccC
Q 012721 414 GVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 414 ~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
..+.. ..+. ..+.+...+|+|-
T Consensus 412 ~g~~~--~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNE--REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCce--EEcc-CCCCccCcccCCC
Confidence 76522 3333 3445777888874
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=6.7e-14 Score=132.63 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=137.6
Q ss_pred CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+.+.+| +|+|+.|+..+. +..|.+|++.+++...+.
T Consensus 204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------------------------------------- 244 (433)
T PRK04922 204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVA------------------------------------- 244 (433)
T ss_pred CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------------------------
Confidence 56888999 789999888763 346899998877543321
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.......+.+|+|||+.|+.. .++ .|++||+. .+...+ +..+
T Consensus 245 -------------------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~ 290 (433)
T PRK04922 245 -------------------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH 290 (433)
T ss_pred -------------------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence 122234478999999987643 444 69999998 444433 2334
Q ss_pred CCceEEEEEecCCccEEEEEc-cCCe--EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSS-SRGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~-~dg~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
......++|+|+| +.|+..+ .+|. |.++|+.+++.. ++... ......++|+|+|++|+
T Consensus 291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE----RLTFQ--------------GNYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----EeecC--------------CCCccCEEECCCCCEEE
Confidence 4455678999999 7776665 4555 555666554321 11111 12344689999999998
Q ss_pred EEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCC
Q 012721 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 416 (457)
Q Consensus 344 s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~ 416 (457)
..+ + ..|.+||+.. ++.. .+. +.... ....|+|||++|+..+.+ +.|+++++..+
T Consensus 352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLST-GSVR-TLT-PGSLD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCceeEEEEECCC-CCeE-ECC-CCCCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 653 2 3689999864 4433 333 21111 367999999988877653 35778887543
Q ss_pred CceeeEEecCCCcceeeeecc
Q 012721 417 SAGGITVEAGKNENRKPILQA 437 (457)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~p 437 (457)
....+..+.+.+..++|+|
T Consensus 414 --~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --ceEEcccCCCCCCCCccCC
Confidence 4455556677788888887
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.1e-13 Score=124.56 Aligned_cols=291 Identities=15% Similarity=0.199 Sum_probs=190.3
Q ss_pred CccccCCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 27 EELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..+.+...-+.|..+|||+|+ |||..--.|++||+..... .|.-|..
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlD--- 93 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLD--- 93 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeeccc---
Confidence 345688899999999999986 6777888999999886553 3555542
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
+.+..+..+ +.|-..++.-..|.+|.+.... |....+.. +..-.++.++.++-.++..+.
T Consensus 94 --------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~-G~hy~~RI---P~~GRDm~y~~~scDly~~gs------- 153 (703)
T KOG2321|consen 94 --------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY-GRHYRTRI---PKFGRDMKYHKPSCDLYLVGS------- 153 (703)
T ss_pred --------ccceeEEEe-ccchhhheEeecCceeeehhhc-Ceeeeeec---CcCCccccccCCCccEEEeec-------
Confidence 334444333 4554455556677877664432 22111110 011112222222222221111
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
+..+.-.+++. ++-+.-+ ....+.++++..++...+|++| .+|.|-.||.+ .......++... ...
T Consensus 154 -------g~evYRlNLEq---GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~-~v~ 220 (703)
T KOG2321|consen 154 -------GSEVYRLNLEQ---GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAAS-SVN 220 (703)
T ss_pred -------CcceEEEEccc---ccccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeeccc-ccC
Confidence 22444445442 2222222 3445789999999999999999 89999999999 455554544332 233
Q ss_pred CCCC-----ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-
Q 012721 265 DLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND- 338 (457)
Q Consensus 265 ~~~~-----~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~- 338 (457)
.|.+ .|+++.|+.+| -.+++|..+|.+.|||+++.+... ... .+..-+|..+.|.+.
T Consensus 221 s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~-----~kd-----------h~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLL-----VKD-----------HGYELPIKKLDWQDTD 283 (703)
T ss_pred CCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCcee-----ecc-----------cCCccceeeecccccC
Confidence 3443 49999999998 999999999999999999976431 111 111347888999775
Q ss_pred -CCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 339 -GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 339 -g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+..+++.+...++|||-.+ +++...+...... ..+|+-|++.+++++.+++.+..|=+...
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcceeEEcccc
Confidence 5567777669999999986 7877776644432 57899999999999999998888777654
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=6.5e-14 Score=136.47 Aligned_cols=243 Identities=14% Similarity=0.197 Sum_probs=158.6
Q ss_pred cCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (457)
Q Consensus 86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 165 (457)
-|+|.+..++.+..|. ..|..++.. ++.+.+|++||.||+|++|+...-.....
T Consensus 1033 gW~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------- 1086 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------- 1086 (1431)
T ss_pred CCCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc-------------
Confidence 3566778888888888 778888885 46668999999999999999875321100
Q ss_pred eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw 244 (457)
..++..++ ..-...+.++...+.+..+|.+ .||.|.+.
T Consensus 1087 ----------------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1087 ----------------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred ----------------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 00111111 2235578899999999999999 99999999
Q ss_pred EcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721 245 NLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 245 d~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
+++..... ...........+.....+..-+|...... .++.+..-+.|..||+++.... +.. ..
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~------w~l-k~------- 1191 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA------WRL-KN------- 1191 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH------Hhh-hc-------
Confidence 99842111 11100010112222233333344433223 7888888899999999986422 221 00
Q ss_pred eeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC---CCcE
Q 012721 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLH 398 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~ 398 (457)
....+.|++++.+|.+.+++.|+. |.+.+||++. +.++..+...... ++..+..+| ....
T Consensus 1192 -~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~--------------~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1192 -QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA--------------PIRHVWLCPTYPQESV 1255 (1431)
T ss_pred -CccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccC--------------CcceEEeeccCCCCce
Confidence 111378999999999999999987 9999999996 7777766532221 113455444 3345
Q ss_pred EEEEe--CCCcEEEEecCCCCceeeEEecC
Q 012721 399 FATGS--YSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 399 l~s~~--~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
.++++ ..+.|.+|++.+| .+..++...
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g-~~~~vl~~s 1284 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETG-LRQTVLWAS 1284 (1431)
T ss_pred EEEecccCCCceeeeecccC-cceEEEEcC
Confidence 55554 4678999999999 666666554
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.2e-13 Score=128.63 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=136.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+.+.+| +|+|+.|+..+.+ ..|.+||+.+++...+.
T Consensus 196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------------------------- 236 (427)
T PRK02889 196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------------------------- 236 (427)
T ss_pred CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence 66889999 7899998877642 45999999887654321
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
.....+.+.+|+|||+.|+. . .++...||.++..+..... +..+..
T Consensus 237 -------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~ 284 (427)
T PRK02889 237 -------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG 284 (427)
T ss_pred -------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence 11224457899999998875 4 6777666655422222222 333445
Q ss_pred ceEEEEEecCCccEEEEEc-cCCeEEEEEcc--CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 269 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
......|+||| +.|+..+ .+|...+|.+. +++.. ++... ........|+|+|++|+..
T Consensus 285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFT--------------GSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCceE----EEecC--------------CCCcCceEECCCCCEEEEE
Confidence 56678899999 7666554 45666777654 32211 11100 1223467899999999865
Q ss_pred ec----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCCCc
Q 012721 346 DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSA 418 (457)
Q Consensus 346 ~~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~~~ 418 (457)
+. ..|.+||+.. ++. ..+...... ....|+|||++|+..+.++ .+++.++. + .
T Consensus 346 s~~~g~~~I~v~d~~~-g~~-~~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~ 405 (427)
T PRK02889 346 SRVGGAFKLYVQDLAT-GQV-TALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-R 405 (427)
T ss_pred EccCCcEEEEEEECCC-CCe-EEccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-C
Confidence 42 2699999874 433 233222111 3689999999998877644 35555553 4 4
Q ss_pred eeeEEecCCCcceeeeeccC
Q 012721 419 GGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~p~ 438 (457)
....+..+.+.+..++|+|-
T Consensus 406 ~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceEEeecCCCCCCCCccCCC
Confidence 55566667788888899874
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.5e-14 Score=124.21 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=166.6
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+-|+++.| +.++.+|++|+.|..+++|+++.--...
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------------ 92 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------------ 92 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhc------------------------------------------
Confidence 88999999 7889999999999999999987532111
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
..++++..-..|...|.|++|+.....+++| .+++|.+.|++ ..+.+.++. -....+.|+.
T Consensus 93 ------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~qsi~V~~-----~~~~~~~VY~ 154 (609)
T KOG4227|consen 93 ------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQSIYVAN-----ENNNRGDVYH 154 (609)
T ss_pred ------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-cceeeeeec-----ccCcccceee
Confidence 1133333335677899999999988999999 99999999999 566665431 1223458999
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEec-CcE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL 350 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~-~~i 350 (457)
+..+|.. +.|++.+.++.|.+||.+...... ..+-. .........+-|+|.. .+|++++. +.+
T Consensus 155 m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-----------AN~~~~F~t~~F~P~~P~Li~~~~~~~G~ 219 (609)
T KOG4227|consen 155 MDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-----------ANSGKNFYTAEFHPETPALILVNSETGGP 219 (609)
T ss_pred cccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-----------cCCCccceeeeecCCCceeEEeccccCCC
Confidence 9999997 999999999999999998754211 11111 1113457788999975 55667766 899
Q ss_pred EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC---
Q 012721 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK--- 427 (457)
Q Consensus 351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--- 427 (457)
.+||.+++..++....+..+..... -.+ ....|+|.|..+++--.-..-.+||+-+. .+......|.
T Consensus 220 ~~~D~R~~~~~~~~~~~~~~L~~~~------~~~---M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 220 NVFDRRMQARPVYQRSMFKGLPQEN------TEW---MGSLWSPSGNQFMSIRRGKCPLYFDFISQ-RCFVLKSDHNPNG 289 (609)
T ss_pred CceeeccccchHHhhhccccCcccc------hhh---hheeeCCCCCeehhhhccCCCEEeeeecc-cceeEeccCCCCc
Confidence 9999998666665554433321100 001 47899999998887766556667888876 2322222222
Q ss_pred ----CcceeeeeccCCc
Q 012721 428 ----NENRKPILQAAPR 440 (457)
Q Consensus 428 ----~~v~~~~~~p~~~ 440 (457)
..+.++.|..+..
T Consensus 290 Y~N~~T~KS~~F~~D~~ 306 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYT 306 (609)
T ss_pred ceeeeeeeeeeeeccee
Confidence 2456677766654
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.8e-13 Score=108.46 Aligned_cols=251 Identities=14% Similarity=0.218 Sum_probs=159.0
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
+..|.++|+.++|. ..+|++|+ ||.|+=|......+. ..+.. .++... .-|..
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es---~~~K~--------------lwe~~~--P~~~~----- 110 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES---LATKR--------------LWEVKI--PMQVD----- 110 (325)
T ss_pred ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh---ccchh--------------hhhhcC--ccccC-----
Confidence 45699999999999 56777776 599999987654431 00000 001000 00110
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
.++. ..|+++... |..+-++.++.|+.+.-||+++|+....+
T Consensus 111 -~~ev-PeINam~ld--P~enSi~~AgGD~~~y~~dlE~G~i~r~~---------------------------------- 152 (325)
T KOG0649|consen 111 -AVEV-PEINAMWLD--PSENSILFAGGDGVIYQVDLEDGRIQREY---------------------------------- 152 (325)
T ss_pred -cccC-CccceeEec--cCCCcEEEecCCeEEEEEEecCCEEEEEE----------------------------------
Confidence 0010 358888884 44455666779999999999999877653
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC--ccc
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--NMD 264 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~ 264 (457)
.+|++.|.++.--.....+++| .||++++||.+ +.+.++++..-.. -+.
T Consensus 153 ---------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 153 ---------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred ---------------------------cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEeccccChhhcC
Confidence 7999999999985444566777 99999999999 6666666533211 122
Q ss_pred CC-CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 265 DL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 265 ~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
.| ...|.+++.+. ..|++|+ ...+.+|+++..+.. .++.. ...+..+.|. .+.++
T Consensus 205 p~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t----~vfpi--------------pa~v~~v~F~--~d~vl 260 (325)
T KOG0649|consen 205 PDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSEST----CVFPI--------------PARVHLVDFV--DDCVL 260 (325)
T ss_pred cccCceeEEEeccC---ceEEecC-CCceeEEeccCCCce----EEEec--------------ccceeEeeee--cceEE
Confidence 23 34567776554 4566654 556899999997654 55554 3567777776 34555
Q ss_pred EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEe
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFS 412 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~ 412 (457)
+++. +.|.-|.+. +.+........... ++..|+... ++|-.++..+.+.|+.
T Consensus 261 ~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c---------------~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 261 IGGEGNHVQSYTLN--GVLQANIPVESTAC---------------YSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred Eeccccceeeeeec--cEEEEeccCCccce---------------eeecccCCceEEEEecccceeeeeee
Confidence 5554 889999885 55444444333221 455665443 4455566677777664
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.7e-15 Score=128.08 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=134.2
Q ss_pred eEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCC
Q 012721 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~ 300 (457)
.+++|+.+|..++++ .||.+++|++....... ....|...|.++.|+||| ++|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 689999999999999 99999999966222222 246688999999999999 999999999 8999999998
Q ss_pred eeeccccccccccccccCcccceeccccceEEEEEccCC---CeEEEE--ec-CcEEEEeccCCCC-----ceeEeeecc
Q 012721 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSR--DY-MNLKLWDIRMDST-----PVATFKIHE 369 (457)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~--~~-~~i~~wd~~~~~~-----~~~~~~~~~ 369 (457)
...... .-+. .......+.|+.++ .+.+.+ .. +.|+.||+..... ..+.+..++
T Consensus 218 ~~~a~~-t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 218 AALARK-TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred chhhhc-CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 322110 0011 12346677888766 333332 33 7888887754222 111122222
Q ss_pred ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
. +.+++.++||+++|.|+.||.|.|++..+-+.....-++|..-|+.+.|+|+.+-..+
T Consensus 283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 2 2689999999999999999999999999887777788999999999999999765554
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1e-13 Score=116.46 Aligned_cols=308 Identities=13% Similarity=0.126 Sum_probs=181.5
Q ss_pred CCceEEEEECCCCCEEEEE-eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
-+.|.-+.|+.|..+++.+ ..++.|.+|++...+ ....+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~--------- 91 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ--------- 91 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC---------
Confidence 4677778888887666554 678899999987554 334444444
Q ss_pred cccCcEEEEEEEecCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+++.+++| +|+|..+ .+...|-.|.+|.+.+.+...+.-. ...+..++|+ ++|.
T Consensus 92 ---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~------------------~dg~ 146 (447)
T KOG4497|consen 92 ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFH------------------PDGQ 146 (447)
T ss_pred ---CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEEC------------------CCCc
Confidence 78999999 7899555 5567899999999988765443211 1111222332 3333
Q ss_pred ccccc----ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721 190 WTENM----ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 190 ~~~~~----~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
|..-- ......+........++.+ .-.+...+.+.|+|||..|+.= -+-.|..|..
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~---------------- 209 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---------------- 209 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeee----------------
Confidence 21100 0000111111112233333 3445567889999999876652 2222332222
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccc----------------------------ccc----c
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS----------------------------ARI----L 310 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~----------------------------~~~----~ 310 (457)
.-.+..++|+|.+ ++|++|+.|+.+|+.+--+-+..... ... .
T Consensus 210 ----~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 210 ----GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred ----ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 1346788999998 99999999999988654332111000 000 0
Q ss_pred ccc-----------ccccC------cccceeccccceEEEEEccCCCeEEEEec---CcEEEEeccCCCCceeEeeeccc
Q 012721 311 RDA-----------AESHG------SKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 311 ~~~-----------~~~~~------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
+.| ...+. +..-+......+.-++|++|..|+++-.| +.+-+||++. .+....+ ....
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avL-iQk~ 362 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVL-IQKH 362 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhh-hhcc
Confidence 000 00000 00112233456788999999999999865 8899999974 3333332 3333
Q ss_pred cccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (457)
Q Consensus 371 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 441 (457)
.+ ....|.|....|+......++++|...-. ...-..+..-.|..+.|+-+|..
T Consensus 363 pi---------------raf~WdP~~prL~vctg~srLY~W~psg~--~~V~vP~~GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 363 PI---------------RAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVGVPKKGFNIQKLQWLQPGEF 416 (447)
T ss_pred ce---------------eEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEecCCCCceeeeEEecCCCcE
Confidence 32 58999999888887777778999987532 33333444467778888766543
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=4.9e-14 Score=125.81 Aligned_cols=94 Identities=11% Similarity=0.198 Sum_probs=79.1
Q ss_pred CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
.+.|+.++|+|||++||+. .||.++|||.. ..+.+.+ ++..-+...|++|+||| ++|++|++|..|.||.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWS 360 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceEEEEEcCCc-cEEEecCCcceEEEEE
Confidence 3489999999999999998 99999999998 4444433 45566789999999999 9999999999999999
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
+..++.. -.+ .+|.++|+.|+|.|
T Consensus 361 f~erRVV------ARG-----------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVV------ARG-----------QGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEE------Eec-----------cccccceeeEeecc
Confidence 9887532 223 67899999999997
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.3e-13 Score=132.54 Aligned_cols=264 Identities=16% Similarity=0.204 Sum_probs=177.4
Q ss_pred CCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 32 ~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
...|+.+.+-. |..+|++|+.||.|+||+-...... ..+.++.+.+-+.. + .
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~----------------------~~eLVTaw~~Ls~~---~-~ 1162 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK----------------------KPELVTAWSSLSDQ---L-P 1162 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccC----------------------CceeEEeecccccc---C-c
Confidence 45788888865 4578999999999999985433210 12234443332210 0 0
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
...+.. .-+.| .....+|++++.-..|+|||.+......-+......-+++++-....|.++..+.
T Consensus 1163 ~~r~~~-~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf----------- 1228 (1387)
T KOG1517|consen 1163 GARGTG-LVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF----------- 1228 (1387)
T ss_pred cCCCCC-eeeeh--hhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee-----------
Confidence 001112 44577 3444466776668999999999988777776666666666666666665554443
Q ss_pred cccccceEEEeccCccccccceeeccCCCCC--eeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
.++.+++||.........+..+ ..|... |..+.+.+.|-- |++| .||.|++||++.. .....++ ...
T Consensus 1229 --aDGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~-----iv~ 1299 (1387)
T KOG1517|consen 1229 --ADGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLT-----IVA 1299 (1387)
T ss_pred --cCCceEEeecccCCccccceee-cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccce-----eee
Confidence 4678999999877665566666 788887 999999886654 8888 9999999999942 2222211 122
Q ss_pred C---CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 266 L---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 266 ~---~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
| .+..+++..++.. ..+|+|+. +.|+||++...++. .+.. . ..++....+.+.+++|+|---++
T Consensus 1300 ~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~-----~~k~-n-----~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLN-----IIKY-N-----PGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred ccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhc-----cccc-C-----cccccCcCCCcceeeecchhHhh
Confidence 2 2358999999998 99999998 99999999875432 1211 0 11112224678999999998889
Q ss_pred EEEec-CcEEEEeccC
Q 012721 343 LSRDY-MNLKLWDIRM 357 (457)
Q Consensus 343 ~s~~~-~~i~~wd~~~ 357 (457)
|+|.. ..|.||....
T Consensus 1367 AaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hhccCCceEEEeecCC
Confidence 98864 9999998753
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=8.5e-14 Score=115.66 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=103.4
Q ss_pred eEEEeCCCCCEEEEe-C----------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE--Ecc
Q 012721 222 NSISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSS 288 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~--~~~ 288 (457)
..+.|+|+|.+|+.- . -+...+|.++..+.....+. +. ..++|.+++|+|+| +.|++ |..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l~-~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----LK-KEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----cc-CCCceEEEEECcCC-CEEEEEEccC
Confidence 367899999888763 2 13456666653344443322 12 33569999999999 65543 446
Q ss_pred CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c--CcEEEEeccCCCCceeE
Q 012721 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVAT 364 (457)
Q Consensus 289 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~--~~i~~wd~~~~~~~~~~ 364 (457)
++.|.+||++... . ..+. ...+..+.|+|+|++|+.++ + |.|.+||.+. .+.+..
T Consensus 82 ~~~v~lyd~~~~~-i----~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 82 PAKVTLYDVKGKK-I----FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred CcccEEEcCcccE-e----Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 7899999997321 1 2222 25678899999999999875 2 7899999984 566655
Q ss_pred eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC------CCcEEEEecC
Q 012721 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG 414 (457)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~------dg~i~iw~~~ 414 (457)
.. |... +.++|+|||++|+++.. |+.++||+..
T Consensus 141 ~~-~~~~----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FE-HSDA----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cc-cCcE----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 54 2222 58999999999998874 7889999985
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=3.6e-14 Score=126.67 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=132.6
Q ss_pred CCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec-
Q 012721 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD- 304 (457)
Q Consensus 227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~- 304 (457)
.|++--+..| .-|.|.+.|.. ..+..+.+... ..-....++|+.|-|.++.+++.+-.+|.+.+||........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~-~~~~sklfne~---r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPI-NFEVSKLFNEE---RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecch-hhHHHHhhhhc---ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3567778889 88999999887 33322222111 111236799999999887888889999999999874211000
Q ss_pred ------cccccccccc----cccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeecccccc
Q 012721 305 ------HSARILRDAA----ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP 373 (457)
Q Consensus 305 ------~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~ 373 (457)
+....|..+. ....+...+.--.+.|...+|+|||++||+.+ ||.++|+|..+ .+++..++..-+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL- 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL- 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence 0000111100 00011222333346899999999999999876 59999999975 55555544332221
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p 437 (457)
++++|||||+||++|++|-.|.||.+... +.+..-++|++.|..|+|-|
T Consensus 336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 69999999999999999999999999988 77888899999999999985
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.2e-13 Score=127.36 Aligned_cols=215 Identities=12% Similarity=0.094 Sum_probs=136.9
Q ss_pred ccCCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGD---RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.+.+.+.+.+|||||+.||..+ .+..|.+|++.+++.. .+..+.++
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~~~~~------ 244 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVASFPRH------ 244 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccCCCCC------
Confidence 3566899999999999998654 2347899998776531 22233333
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEe-eCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~-s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
+..+.| +|||+.|+.. +.++ .|.+||+.+++...+
T Consensus 245 ---------~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l------------------------------- 282 (429)
T PRK03629 245 ---------NGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV------------------------------- 282 (429)
T ss_pred ---------cCCeEE--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-------------------------------
Confidence 345789 7899988765 4444 588888877654432
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCe--EEEEEcCCCcceeeeeecC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~ 259 (457)
..+...+....|+|||+.|+.. .++. |+++|+. .+...++
T Consensus 283 -------------------------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~~~l---- 326 (429)
T PRK03629 283 -------------------------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAPQRI---- 326 (429)
T ss_pred -------------------------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCeEEe----
Confidence 1223356678999999988765 3444 4444665 3333322
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
...........|+|+| +.|+..+.+ ..|.+||+.+++.. .+.. ........|+
T Consensus 327 ----t~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~-----~Lt~--------------~~~~~~p~~S 382 (429)
T PRK03629 327 ----TWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-----VLTD--------------TFLDETPSIA 382 (429)
T ss_pred ----ecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE-----EeCC--------------CCCCCCceEC
Confidence 1222345578899999 777665533 35888998876432 1111 0123357899
Q ss_pred cCCCeEEEEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 337 ~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
|||++|+.++ + ..+.++++. +.....+..|.+.+ ...+|+|
T Consensus 383 pDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~~---------------~~p~Wsp 427 (429)
T PRK03629 383 PNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV---------------KFPAWSP 427 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCCc---------------CCcccCC
Confidence 9999998765 3 246777774 66666776666543 4678886
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=2.1e-12 Score=108.35 Aligned_cols=248 Identities=14% Similarity=0.148 Sum_probs=155.5
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc--cc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE--WT 191 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 191 (457)
....+++| +.|...+++|..+| .++|+++--+........... ..-+.+.. ...-.++.-.+. --
T Consensus 6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G-~~~veMLf---------R~N~laLVGGg~~pky 72 (346)
T KOG2111|consen 6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG-FKIVEMLF---------RSNYLALVGGGSRPKY 72 (346)
T ss_pred CceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhhhccccCc-hhhhhHhh---------hhceEEEecCCCCCCC
Confidence 34666899 67887888888777 899998753221111111000 00000000 000011111111 01
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
+...+.+||- ...+++..+ ....+|.++.+.+ ..|++...+.|++|.....-+.+..++.. .......
T Consensus 73 ~pNkviIWDD---~k~~~i~el--~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~-----~NPkGlC 140 (346)
T KOG2111|consen 73 PPNKVIIWDD---LKERCIIEL--SFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETR-----SNPKGLC 140 (346)
T ss_pred CCceEEEEec---ccCcEEEEE--EeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecc-----cCCCceE
Confidence 2236889993 233444443 4567888988874 46777788999999988555555544322 1112233
Q ss_pred EEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 272 SAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
+++-+.+. .+||.-+ .-|.|+|-|+...+.. ....+.+|.+.|.+++++.+|..+|+++. |+
T Consensus 141 ~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT 204 (346)
T KOG2111|consen 141 SLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGT 204 (346)
T ss_pred eecCCCCc-eEEEcCCCccceEEEEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcE
Confidence 33333333 4555544 5699999998874311 12335778999999999999999999986 55
Q ss_pred -EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 350 -LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 350 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
|||||..+ +.++..++...... ++++++|||++.+||++|+.|+|+|+.+...
T Consensus 205 LIRIFdt~~-g~~l~E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 205 LIRIFDTED-GTLLQELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEEcCC-CcEeeeeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 79999986 88888877544332 2369999999999999999999999999864
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.3e-13 Score=115.38 Aligned_cols=255 Identities=14% Similarity=0.124 Sum_probs=168.7
Q ss_pred cCCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 31 h~~~V~~~~~s~~~--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
....|++++|..++ +.|...+.+..+..+........ ++..-+.+.....
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~---------------------s~~~~~~~~~l~~------- 105 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS---------------------SSLDDAKTVSLGT------- 105 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccc---------------------ccccccccccccc-------
Confidence 35678888887665 34444445656666666554421 0000011112222
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
++|..++. .++ .|++|-.+|.+.+|....+.....
T Consensus 106 -----~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss------------------------------------ 140 (412)
T KOG3881|consen 106 -----KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSS------------------------------------ 140 (412)
T ss_pred -----ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence 67777776 455 788888999999999886542100
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CC--CeEEEEEcCCCcceeeeeecCCC--c
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DD--LRINLWNLEISDQCFNIVDMKPS--N 262 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~--~ 262 (457)
++.. ..-...+..+.-++....| ++| .. ..+++||++.. .++|..+.. .
T Consensus 141 --------------------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD 195 (412)
T KOG3881|consen 141 --------------------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPND 195 (412)
T ss_pred --------------------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCc
Confidence 0000 0111345566666655555 446 66 89999999843 444433321 1
Q ss_pred ccC--CCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721 263 MDD--LTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 263 ~~~--~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 338 (457)
.-+ -.-+++++.|-+. . ..|+++..-+.+++||.+.+... +..+. -...+++++...|+
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRP---V~~fd-------------~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRP---VAQFD-------------FLENPISSTGLTPS 258 (412)
T ss_pred cccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcc---eeEec-------------cccCcceeeeecCC
Confidence 111 1245678888876 5 79999999999999999976421 12222 12468999999999
Q ss_pred CCeEEEEec-CcEEEEeccCCCCceeE-eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 339 GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 339 g~~l~s~~~-~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
|++|++|+. +.+..+|++. ++.+.. +.+-.+.+ .++..+|.+++|++++-|..|+|+|+++.
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred CcEEEEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccc
Confidence 999999987 9999999986 666555 66666654 68999999999999999999999999985
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.4e-13 Score=125.99 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=129.4
Q ss_pred cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..+.+.+.+.+|+|||+.||..+.+ ..|.+||+.+++.. .+..+.
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-------------------------~l~~~~------- 239 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-------------------------VVANFK------- 239 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-------------------------EeecCC-------
Confidence 4567889999999999999877642 35999999877531 111122
Q ss_pred ccccccccCcEEEEEEEecCCCCEEE-EeeCCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~-s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
+.+...+| +|+|+.|+ +.+.++...+|.++ ++....+
T Consensus 240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------ 279 (427)
T PRK02889 240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRL------------------------------ 279 (427)
T ss_pred --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEEC------------------------------
Confidence 33567889 78998876 46778877777654 3322111
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCC-CcceeeeeecC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQCFNIVDMK 259 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~-~~~~~~~~~~~ 259 (457)
..+........|+|||+.|+.. .++...+|.+.. .+....+.
T Consensus 280 --------------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--- 324 (427)
T PRK02889 280 --------------------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--- 324 (427)
T ss_pred --------------------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---
Confidence 2233345567899999988764 456666666542 22222221
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
+.+ ......+|+|+| ++|+..+.++ .|.+||+.+++.. .+... .....+.|+
T Consensus 325 ---~~g--~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~----~lt~~---------------~~~~~p~~s 379 (427)
T PRK02889 325 ---FTG--SYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT----ALTDT---------------TRDESPSFA 379 (427)
T ss_pred ---cCC--CCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE----EccCC---------------CCccCceEC
Confidence 122 223467899999 8887766544 6999999876432 11111 123567999
Q ss_pred cCCCeEEEEec--Cc--EEEEeccCCCCceeEeeeccc
Q 012721 337 NDGQHLLSRDY--MN--LKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 337 ~~g~~l~s~~~--~~--i~~wd~~~~~~~~~~~~~~~~ 370 (457)
|||++|+..++ |. +.+.++ .+.....+..+.+
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~--~g~~~~~l~~~~g 415 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSS--DGRIKQRLSVQGG 415 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEEC--CCCceEEeecCCC
Confidence 99999986642 33 455555 3555555654444
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=1.2e-14 Score=127.51 Aligned_cols=218 Identities=13% Similarity=0.118 Sum_probs=171.5
Q ss_pred EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (457)
-..+.| +.+|.+++.++..|.|..+|..++++...+.
T Consensus 132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------------------------------- 168 (545)
T KOG1272|consen 132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----------------------------------------- 168 (545)
T ss_pred Ceeeee--cCCccEEEecCCccceeeeecccceeeeeee-----------------------------------------
Confidence 456778 7899999999999999999999987654422
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 275 (457)
-...|..+.|-.+.+++|++..+.++|||-. +-+... ++.| ..|..+.|
T Consensus 169 ---------------------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHC--------lk~~-~~v~rLeF 217 (545)
T KOG1272|consen 169 ---------------------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHC--------LKRH-IRVARLEF 217 (545)
T ss_pred ---------------------hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEee--------hhhc-Cchhhhcc
Confidence 2236778888888889999999999999977 333332 2333 56889999
Q ss_pred ecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEe
Q 012721 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD 354 (457)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd 354 (457)
-|.. -+|++++..|.++.-|+.+|++.. .+.. -.+.+..++-+|-.-.+-.|.. |+|.+|.
T Consensus 218 LPyH-fLL~~~~~~G~L~Y~DVS~GklVa----~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 218 LPYH-FLLVAASEAGFLKYQDVSTGKLVA----SIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred cchh-heeeecccCCceEEEeechhhhhH----HHHc-------------cCCccchhhcCCccceEEEcCCCceEEecC
Confidence 9998 899999999999999999997552 1211 1356778888888878888855 9999999
Q ss_pred ccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeee
Q 012721 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI 434 (457)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 434 (457)
..+ .+++..+..|.+.+ .++++.++|+|+||.+.|..++|||+++-. .+.+... ..+...++
T Consensus 280 P~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~ls 341 (545)
T KOG1272|consen 280 PNS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNLS 341 (545)
T ss_pred CCC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeecccc-ccceeec-CCCccccc
Confidence 986 78888888899876 599999999999999999999999999884 4444444 56777788
Q ss_pred eccCCccee
Q 012721 435 LQAAPRARR 443 (457)
Q Consensus 435 ~~p~~~~~~ 443 (457)
+|-.+.-++
T Consensus 342 ~SqkglLA~ 350 (545)
T KOG1272|consen 342 LSQKGLLAL 350 (545)
T ss_pred cccccceee
Confidence 877655444
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.1e-13 Score=126.60 Aligned_cols=207 Identities=13% Similarity=0.102 Sum_probs=130.1
Q ss_pred cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..+...+.+.+|+|||+.|+..+.+ ..|.+|++.+++.. . +....
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-------------------------~---l~~~~---- 247 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-------------------------L---VASFR---- 247 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-------------------------E---eccCC----
Confidence 3466789999999999999887633 46999999776531 1 11222
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEE-eeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
+...+.+| +|+|+.++. .+.++ .|.+||+.+++...+
T Consensus 248 --------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------------------------------ 287 (433)
T PRK04922 248 --------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------------------------------ 287 (433)
T ss_pred --------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------------------------------
Confidence 23446788 789987764 45555 588888877754332
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCe--EEEEEcCCCcceeeeeec
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDM 258 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~ 258 (457)
..+.......+|+|||+.|+.+ .++. |+++|+. .++...+.
T Consensus 288 --------------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~lt-- 332 (433)
T PRK04922 288 --------------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERLT-- 332 (433)
T ss_pred --------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEee--
Confidence 2233334567999999988775 4444 6666766 33333221
Q ss_pred CCCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
. +......++|+|+| +.|+..+.++ .|.+||+.+++.. .+.. ........|
T Consensus 333 ----~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~--------------~~~~~~p~~ 386 (433)
T PRK04922 333 ----F--QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTP--------------GSLDESPSF 386 (433)
T ss_pred ----c--CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCC--------------CCCCCCceE
Confidence 1 22334568999999 7777665332 6999999876432 1111 112345689
Q ss_pred ccCCCeEEEEec----CcEEEEeccCCCCceeEeeeccc
Q 012721 336 ANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 336 s~~g~~l~s~~~----~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
+|||++|+..++ ..|.++++. +.....+..+.+
T Consensus 387 spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g 423 (433)
T PRK04922 387 APNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG 423 (433)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence 999998885532 457777774 555555554433
No 226
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.1e-14 Score=118.03 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=130.0
Q ss_pred CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC-CccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (457)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 308 (457)
..++++ .+|.|++||.. .++.+.. ++++...+..+.|..+ ++..+.+++.||+|++||+|...... ..
T Consensus 41 ~~vav~lSngsv~lyd~~-tg~~l~~-------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG-TGQLLEE-------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RI 110 (376)
T ss_pred eeEEEEecCCeEEEEecc-chhhhhe-------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--he
Confidence 567888 99999999999 4666654 6778888888888764 55789999999999999999864321 11
Q ss_pred cccccccccCcccceeccc-cceEEEEEccCCCeEEEEe-----cCcEEEEeccCCCCceeEee-eccccccccccccCC
Q 012721 309 ILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNN 381 (457)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~-----~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 381 (457)
.+.. +. .+..+++....++.+++|+ +-.|.+||+++..+++..+. .|..-
T Consensus 111 ~~~~-------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD---------- 167 (376)
T KOG1188|consen 111 SWTQ-------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD---------- 167 (376)
T ss_pred eccC-------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc----------
Confidence 1222 12 3567777777888998875 36799999998666565544 45543
Q ss_pred CCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCce--eeEEecCCCcceeeeeccCCcceeccc
Q 012721 382 DSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 382 ~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~~~~~ 446 (457)
|+++.|+|. .++|++|+.||.|.|||++..... +...-.|.+.|..+.|+..+=.+.+.+
T Consensus 168 -----VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 168 -----VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred -----ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE
Confidence 389999995 679999999999999999755322 233345677788999998874444433
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=4.4e-14 Score=118.67 Aligned_cols=225 Identities=21% Similarity=0.336 Sum_probs=144.1
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (457)
Q Consensus 37 ~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (457)
-++|||+|+++|+.+.- .+.|-|..+.+.. ..+.. - +.|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~---------------------------qlf~c-l------------dki 51 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH---------------------------QLFLC-L------------DKI 51 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH---------------------------HHHHH-H------------HHh
Confidence 46799999999998865 7888887766532 00110 1 568
Q ss_pred EEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721 117 NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (457)
Q Consensus 117 ~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (457)
..+.| +.+..++++ ...|+.|.+|++...+....+
T Consensus 52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI------------------------------------------ 87 (447)
T KOG4497|consen 52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCKI------------------------------------------ 87 (447)
T ss_pred hheee--eccceeeeeeeeccceEEEEEeecceeEEEe------------------------------------------
Confidence 88999 577766665 568889999999876654433
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 273 (457)
......+.+++|+|||+.+. ++ .|-.|.+|.+.+ .....+ +-....+..+
T Consensus 88 -------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~~~~~--------~~pK~~~kg~ 139 (447)
T KOG4497|consen 88 -------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT-QKGYLL--------PHPKTNVKGY 139 (447)
T ss_pred -------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEecc-ceeEEe--------cccccCceeE
Confidence 34456788999999996655 46 899999999984 333322 2223445788
Q ss_pred EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEE
Q 012721 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~w 353 (457)
+|+|+| ++.+..+.-.....+++...+.- .++.. +.-.+-..+.+.|+|||..||. |
T Consensus 140 ~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W----~ll~~----------f~~dT~DltgieWsPdg~~laV--------w 196 (447)
T KOG4497|consen 140 AFHPDG-QFCAILSRRDCKDYVQISSCKAW----ILLKE----------FKLDTIDLTGIEWSPDGNWLAV--------W 196 (447)
T ss_pred EECCCC-ceeeeeecccHHHHHHHHhhHHH----HHHHh----------cCCCcccccCceECCCCcEEEE--------e
Confidence 999999 98888775422222222211000 01111 1111245788999999977764 5
Q ss_pred eccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
|.-.+.+ +..+...-+. ..++|+|-+++|+.|+.|+.+++-+--
T Consensus 197 d~~Leyk-v~aYe~~lG~----------------k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 197 DNVLEYK-VYAYERGLGL----------------KFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred cchhhhe-eeeeeeccce----------------eEEEeccccceEEeeccchhhhhhcee
Confidence 4322111 1112111111 479999999999999999999886543
No 228
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=5e-15 Score=138.55 Aligned_cols=232 Identities=17% Similarity=0.218 Sum_probs=172.8
Q ss_pred ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (457)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (457)
+.++.+.||- .+|.|+.| ...|.++++|+.|..++||..+++.+...
T Consensus 181 k~ikrLlgH~------------naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs------------------- 227 (1113)
T KOG0644|consen 181 KNIKRLLGHR------------NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS------------------- 227 (1113)
T ss_pred HHHHHHHhhh------------hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-------------------
Confidence 4555677787 88999999 78999999999999999999888765432
Q ss_pred cccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc
Q 012721 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (457)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~ 250 (457)
..||.+.|+.++.+.+..+++++ .|..|++|.+. .+
T Consensus 228 ------------------------------------------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~ 264 (1113)
T KOG0644|consen 228 ------------------------------------------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DG 264 (1113)
T ss_pred ------------------------------------------CCCCccccchhccchhhhhhhhcccCceEEEEecC-CC
Confidence 17999999999999988889998 99999999998 67
Q ss_pred ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (457)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 330 (457)
..+.+ +.+|++.|++++|+|.. +.+.||++++||.+-.- ..+...+..+. -..-+
T Consensus 265 ~pvsv-------LrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp~~~~-------~~~~~ 319 (1113)
T KOG0644|consen 265 APVSV-------LRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRPLKFT-------EKDLV 319 (1113)
T ss_pred chHHH-------HhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCCCCcc-------cccce
Confidence 66665 78999999999999963 67899999999998211 11111000000 02456
Q ss_pred EEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcE
Q 012721 331 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLL 408 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i 408 (457)
.++.|..++.-++++++ +.-..|.+.. +..+.... .-+.++.| ..+.+++-.+-.+
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l---------------if~t~ssd~~~~~~~ar~~~~~ 377 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQ-------LAWRSNLL---------------IFVTRSSDLSSIVVTARNDHRL 377 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhH-------hhhhccce---------------EEEeccccccccceeeeeeeEe
Confidence 77788888888888875 8778777643 11111110 01112222 2466777788899
Q ss_pred EEEecCCCCceeeEEecCCCcceeeeeccCCcceecccc
Q 012721 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS 447 (457)
Q Consensus 409 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 447 (457)
.+|++.+| .....+.+|..++..+.+||-.|-...+.+
T Consensus 378 ~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 378 CVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred eeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 99999999 778889999999999999999887766444
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1.2e-12 Score=108.81 Aligned_cols=117 Identities=13% Similarity=0.251 Sum_probs=87.1
Q ss_pred CCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc---CC
Q 012721 217 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG 290 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg 290 (457)
..++|.+++|+|+|+.|++ | .+..|.+||++ .+.+.. + +...+..+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~-------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFS-------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEe-------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 4457999999999998765 4 67899999997 333322 1 33567889999999 99988864 47
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-------cCcEEEEeccCCCCcee
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA 363 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-------~~~i~~wd~~~~~~~~~ 363 (457)
.|.+||+++.+.. ...+. ..++.++|+|+|++++++. |+.++||+.. ++.+.
T Consensus 126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~ 184 (194)
T PF08662_consen 126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY 184 (194)
T ss_pred EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence 7999999976543 22222 3578999999999999763 4788999985 66665
Q ss_pred Eee
Q 012721 364 TFK 366 (457)
Q Consensus 364 ~~~ 366 (457)
...
T Consensus 185 ~~~ 187 (194)
T PF08662_consen 185 KKP 187 (194)
T ss_pred ecc
Confidence 543
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=4.2e-10 Score=103.34 Aligned_cols=272 Identities=12% Similarity=0.130 Sum_probs=161.2
Q ss_pred CCceEEEEECCCCCEEEEEeC----CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
.....-++++|++++|.+... +|.|..|++....- ..+.+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------ 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------ 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence 456677899999999988866 57899999876411 011222222111
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
.....+++ ++++.+|+++. .+|.|.++++.. +.........
T Consensus 87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~----------------------------- 129 (345)
T PF10282_consen 87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV----------------------------- 129 (345)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE-----------------------------
T ss_pred ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeec-----------------------------
Confidence 33456777 78999988887 589999999987 4443321100
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeee-eecCCCc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI-VDMKPSN 262 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~ 262 (457)
....... .. .........++.++|+++++++. ....|.+|+++.....+.. ... .
T Consensus 130 --------------~~~g~g~-~~----~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---~ 187 (345)
T PF10282_consen 130 --------------RHEGSGP-NP----DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---K 187 (345)
T ss_dssp --------------ESEEEES-ST----TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE---E
T ss_pred --------------ccCCCCC-cc----cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc---c
Confidence 0000000 00 01223457889999999988886 6779999999843321211 100 1
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc--CCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
+ ........+.|+|++....++...++.|.+|++. .+... ....... .+. .+. .......+.++|||+
T Consensus 188 ~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~---~~~---~~~-~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 188 V-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTIST---LPE---GFT-GENAPAEIAISPDGR 257 (345)
T ss_dssp C-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEES---CET---TSC-SSSSEEEEEE-TTSS
T ss_pred c-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEeee---ccc---ccc-ccCCceeEEEecCCC
Confidence 2 2345578999999994455666688999999998 33221 1111111 000 000 012578899999999
Q ss_pred eEEEEe--cCcEEEEeccCCCCceeE---eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecC
Q 012721 341 HLLSRD--YMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 414 (457)
Q Consensus 341 ~l~s~~--~~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~ 414 (457)
+|.++. .+.|.+|+++.....+.. +..... .+ +.++++|+|++|++++. ++.|.+|+++
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~P--------------r~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-FP--------------RHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS-SE--------------EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC-Cc--------------cEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999875 389999999532222322 222111 11 58999999999998875 6789999774
Q ss_pred --CC
Q 012721 415 --VG 416 (457)
Q Consensus 415 --~~ 416 (457)
+|
T Consensus 323 ~~tG 326 (345)
T PF10282_consen 323 PDTG 326 (345)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 55
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=8.1e-13 Score=113.74 Aligned_cols=209 Identities=16% Similarity=0.153 Sum_probs=153.7
Q ss_pred CCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC--CeE
Q 012721 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFV 292 (457)
Q Consensus 216 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i 292 (457)
....+|..++.. | ..|++| .+|.+.+|..+... .... ++..+. ....+..+.-++..+.++++|+.. ..+
T Consensus 103 l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d-~hss---~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGD-LHSS---KLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred cccccccchhhc-C-CEEEEEecCCcEEEEeccCCc-cccc---cceeee-cCCceeeeccCCCCCceEecCchhcccce
Confidence 344566666654 3 467777 99999999988322 1100 000122 224466677777776788889988 889
Q ss_pred EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC--CCeEEEEec-CcEEEEeccCCCCceeEeeecc
Q 012721 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHE 369 (457)
Q Consensus 293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~ 369 (457)
.+||+.+.+ ++|......+..-... -.-+++++.|-+. ...+|+++. +.+++||.+.+.+++..+...+
T Consensus 176 kiwdle~~~------qiw~aKNvpnD~L~Lr--VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E 247 (412)
T KOG3881|consen 176 KIWDLEQSK------QIWSAKNVPNDRLGLR--VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE 247 (412)
T ss_pred eeeecccce------eeeeccCCCCccccce--eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc
Confidence 999999874 4554411111110000 0235678889887 788888886 9999999998888999988777
Q ss_pred ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (457)
Q Consensus 370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 449 (457)
..+ +++...|++++|++|..-+.+..||++.++.....+.+..+.++++..||..|-.++ ..+
T Consensus 248 ~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las--~GL 310 (412)
T KOG3881|consen 248 NPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS--CGL 310 (412)
T ss_pred Ccc---------------eeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEe--ecc
Confidence 665 688999999999999999999999999996666669999999999999999999999 899
Q ss_pred ccccccC
Q 012721 450 TRGLYRQ 456 (457)
Q Consensus 450 ~~~~~~~ 456 (457)
+|..|-.
T Consensus 311 DRyvRIh 317 (412)
T KOG3881|consen 311 DRYVRIH 317 (412)
T ss_pred ceeEEEe
Confidence 9998853
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-11 Score=117.40 Aligned_cols=212 Identities=15% Similarity=0.185 Sum_probs=129.5
Q ss_pred CcEEEEEEEecCCCCEEEEeeC-CC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTN-DK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+....| +|||+.|+..+. ++ .|.+||+.+++...+..
T Consensus 218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------------------------ 259 (448)
T PRK04792 218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------------------------ 259 (448)
T ss_pred CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------------------------------------
Confidence 56788999 789998887653 32 57778887765433211
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
........+|+|||+.|+.. .++ .|+++|+. .++..+ +..+
T Consensus 260 --------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~ 304 (448)
T PRK04792 260 --------------------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRH 304 (448)
T ss_pred --------------------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccC
Confidence 11123367899999988763 555 47778887 444332 2334
Q ss_pred CCceEEEEEecCCccEEEEEc-cCC--eEEEEEccCCeeecccccc-ccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~-~dg--~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
.......+|+|+| +.|+..+ .++ .|.++|+.+++.. ++ +.. ......+|+|||++|
T Consensus 305 ~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l 364 (448)
T PRK04792 305 RAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSM 364 (448)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EEecCC---------------CCCcCeeECCCCCEE
Confidence 4456778999999 6665544 344 4566676665422 11 111 223456899999999
Q ss_pred EEEe-c-C--cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-C--cEEEEecCC
Q 012721 343 LSRD-Y-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGV 415 (457)
Q Consensus 343 ~s~~-~-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g--~i~iw~~~~ 415 (457)
+..+ . + .|.++|+.. ++ ...+...... ....|+|||+.|+..+.+ + .+++++..
T Consensus 365 ~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~- 425 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLET-GA-MQVLTSTRLD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID- 425 (448)
T ss_pred EEEEecCCceEEEEEECCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 8653 2 4 455566653 33 3333222111 246899999988776543 3 37777764
Q ss_pred CCceeeEEecCCCcceeeeeccC
Q 012721 416 GSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
| .....+..+.+.+..++|+|-
T Consensus 426 G-~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 426 G-RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred C-CceEECcCCCCCcCCCccCCC
Confidence 4 345556666677788888874
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.1e-12 Score=120.00 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=121.1
Q ss_pred cCCCCCeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE-EEEccC
Q 012721 215 HAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSR 289 (457)
Q Consensus 215 ~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~d 289 (457)
..|...+.+.+|+|||+.|+.. .+..|++||+. .+.... +..+.+.+...+|+|+| +.| ++.+.+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~~~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~ 267 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQREL--------VGNFPGMTFAPRFSPDG-RKVVMSLSQG 267 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcEEE--------eecCCCcccCcEECCCC-CEEEEEEecC
Confidence 3566689999999999988775 24689999998 444433 23344567788999999 655 455656
Q ss_pred Ce--EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--C--cEEEEeccCCCCcee
Q 012721 290 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVA 363 (457)
Q Consensus 290 g~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~--~i~~wd~~~~~~~~~ 363 (457)
+. |.+||+.+++.. ++. .+........|+|||+.|+..++ + .|+++|+. +....
T Consensus 268 g~~~Iy~~d~~~~~~~----~Lt--------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~ 327 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT----RLT--------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPR 327 (435)
T ss_pred CCceEEEEECCCCceE----Ecc--------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeE
Confidence 55 777788776432 111 12234567899999999986653 3 57777875 33344
Q ss_pred EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
.+..+.... ....|+|||++|+..+.+ ..|.+|++.++.. ..+. ....+..+.|+||+.
T Consensus 328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc-CCCCCCCCeECCCCC
Confidence 443332221 368899999999877653 3688899866532 2222 223578899999998
Q ss_pred ceec
Q 012721 441 ARRS 444 (457)
Q Consensus 441 ~~~~ 444 (457)
..+.
T Consensus 390 ~i~~ 393 (435)
T PRK05137 390 VIMF 393 (435)
T ss_pred EEEE
Confidence 7765
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1e-12 Score=112.05 Aligned_cols=202 Identities=11% Similarity=0.151 Sum_probs=136.7
Q ss_pred CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
+..+..++|++.-..++++ .|-.|++||-.. .+...+ .......|+|++|-|.+...|++|+..| |.+|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~L------ks~sQrnvtclawRPlsaselavgCr~g-IciW~ 168 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKL------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWS 168 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC--CCCcee------cchhhcceeEEEeccCCcceeeeeecce-eEEEE
Confidence 3467788999866667777 999999999773 222221 1223467999999999878899988776 78997
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCCCCceeEe-eecccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATF-KIHEHLRP 373 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~~~~~-~~~~~~~~ 373 (457)
...........+.+..+ ........+| .+|++|.|.+||..+++++ +..|.|||.++ +..+... .+..+.
T Consensus 169 ~s~tln~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~-- 241 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGF-- 241 (445)
T ss_pred cCccccccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCce--
Confidence 65432222211222210 0011112344 6899999999999999886 38999999986 3333222 222222
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccccc
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT 450 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 450 (457)
.-+.||||+.+|+++.-|+..++|+.........-.-+ .+.|..-.|+|.|+..+...+..+
T Consensus 242 --------------slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 242 --------------SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred --------------eeEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCc
Confidence 46899999999999999999999976544222222222 348999999999999888655443
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.7e-12 Score=115.81 Aligned_cols=286 Identities=15% Similarity=0.187 Sum_probs=173.1
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeee-ccccccccccCCCCCc
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT-LLAEKNFMNEHNPPSF 182 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 182 (457)
..+..+++....+.|.. ++||+++++ |...-.|++||+.+-.+.....+ ..++..+.. +..-...+....
T Consensus 43 eLiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~~---- 114 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQN---- 114 (703)
T ss_pred HHHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEeec----
Confidence 34566677788899999 799998765 56788999999987544322211 111111000 000000111000
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-CCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
+..|.+...-. ..+-..-...-..++++ |...+++.|....|+-++++ .+..+..
T Consensus 115 ----------DR~IefHak~G-------~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE-qGrfL~P------ 170 (703)
T KOG2321|consen 115 ----------DRTIEFHAKYG-------RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE-QGRFLNP------ 170 (703)
T ss_pred ----------CceeeehhhcC-------eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcc-ccccccc------
Confidence 11111110000 00000001122345664 45566666688889999999 7776654
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
+.-..+.++++..++.. .+|++|+.+|.|.+||.+....+ ..+.. . ..............|+++.|+.+|-.
T Consensus 171 -~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv----~~l~~-~-~~v~s~pg~~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 171 -FETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRV----GTLDA-A-SSVNSHPGGDAAPSVTALKFRDDGLH 242 (703)
T ss_pred -cccccccceeeeecCcc-ceEEecccCceEEEecchhhhhh----eeeec-c-cccCCCccccccCcceEEEecCCcee
Confidence 34455789999999998 89999999999999999987544 22221 0 00000001111245999999999999
Q ss_pred EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEecCCCCc
Q 012721 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
+++|+. |.|.|||++. .+++.. ..|....+ +..+.|-+. ...|++. +...++|||-.+| +
T Consensus 243 ~aVGts~G~v~iyDLRa-~~pl~~-kdh~~e~p-------------i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k 305 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRA-SKPLLV-KDHGYELP-------------IKKLDWQDTDQQNKVVSM-DKRILKIWDECTG-K 305 (703)
T ss_pred EEeeccCCcEEEEEccc-CCceee-cccCCccc-------------eeeecccccCCCceEEec-chHHhhhcccccC-C
Confidence 999976 9999999996 555543 34554432 247888664 3455544 4578999999999 5
Q ss_pred eeeEEecCCCcceeeeeccCCcceeccccc
Q 012721 419 GGITVEAGKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
....++. ..+++.+++-|++-+...+.-+
T Consensus 306 ~~asiEp-t~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 306 PMASIEP-TSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred ceeeccc-cCCcCceeeecCCceEEEecCC
Confidence 5555554 4449999999988777765433
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=2.3e-11 Score=115.58 Aligned_cols=210 Identities=15% Similarity=0.163 Sum_probs=128.6
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+...+| +++|++|+.++.+ ..|.+|++.+++....
T Consensus 190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-------------------------------------- 229 (417)
T TIGR02800 190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV-------------------------------------- 229 (417)
T ss_pred CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 45788889 7999999887643 4799999887754332
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CC--CeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..+...+.+++|+||++.|+.. .+ ..|++||+. .+.... +..+
T Consensus 230 ------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~--------l~~~ 276 (417)
T TIGR02800 230 ------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTR--------LTNG 276 (417)
T ss_pred ------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEE--------CCCC
Confidence 1223345568899999877653 33 468889987 443332 2233
Q ss_pred CCceEEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
........|+|+| +.|+..+. ++ .|.++|+.+++.. .+. .+...+..+.|+|+|++|+
T Consensus 277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~--------------~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR----RLT--------------FRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----Eee--------------cCCCCccCeEECCCCCEEE
Confidence 3444567899999 76665543 33 5777777665321 111 1124567789999999998
Q ss_pred EEec-C---cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCC
Q 012721 344 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVG 416 (457)
Q Consensus 344 s~~~-~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~ 416 (457)
.++. + .|.+||+.. + ....+...... ....|+||+++|+..+.++ .+++.+.. +
T Consensus 338 ~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g 398 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDG-G-GERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD-G 398 (417)
T ss_pred EEEccCCceEEEEEeCCC-C-CeEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC-C
Confidence 7653 2 688888864 2 23333222111 3578999999988877654 35555543 3
Q ss_pred CceeeEEecCCCcceeeee
Q 012721 417 SAGGITVEAGKNENRKPIL 435 (457)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~ 435 (457)
.....+....+.+..+.|
T Consensus 399 -~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 399 -RFRARLPLGNGDVREPAW 416 (417)
T ss_pred -ceeeECCCCCCCcCCCCC
Confidence 233444433444444443
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=3.3e-11 Score=110.36 Aligned_cols=282 Identities=11% Similarity=0.107 Sum_probs=163.7
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (457)
Q Consensus 36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (457)
..+.|+|||+++++++.||.|.++|+.+.+. +.+++.- ..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~~ 79 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------GN 79 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------SE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------CC
Confidence 4578999999999999999999999998774 2333322 34
Q ss_pred EEEEEEEecCCCCEEEEee-CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 116 INRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
..++++ +++|++++++. .++.+.++|.++.+....+......
T Consensus 80 ~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~----------------------------------- 122 (369)
T PF02239_consen 80 PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP----------------------------------- 122 (369)
T ss_dssp EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE------------------------------------
T ss_pred cceEEE--cCCCCEEEEEecCCCceeEeccccccceeeccccccc-----------------------------------
Confidence 677888 79999988775 6899999999988776654322100
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
.......+..+..+|....++.. +.+.|.+.|.... .....- ..........
T Consensus 123 -------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~~~~~------~i~~g~~~~D 176 (369)
T PF02239_consen 123 -------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KNLKVT------TIKVGRFPHD 176 (369)
T ss_dssp -------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SCEEEE------EEE--TTEEE
T ss_pred -------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-ccccee------eecccccccc
Confidence 01133467778778888766655 5688988887733 222211 1123345678
Q ss_pred EEEecCCccEEEE-EccCCeEEEEEccCCeeeccccccccccccccCc-ccceeccc--cceEEEEEccCCCeEEEE-ec
Q 012721 273 AEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEII--ASISDIKFANDGQHLLSR-DY 347 (457)
Q Consensus 273 v~~~p~~~~~l~~-~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~--~~v~~~~~s~~g~~l~s~-~~ 347 (457)
..|+|++ ++++. ...++.|-++|.++++... .++. ...+.. ...-..|. ++++.. ...+.+.++. +.
T Consensus 177 ~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~----~i~~-g~~p~~~~~~~~php~~g~vw~~--~~~~~~~~~~ig~ 248 (369)
T PF02239_consen 177 GGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVA----LIDT-GKKPHPGPGANFPHPGFGPVWAT--SGLGYFAIPLIGT 248 (369)
T ss_dssp EEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEE----EEE--SSSBEETTEEEEEETTTEEEEEE--EBSSSSEEEEEE-
T ss_pred cccCccc-ceeeecccccceeEEEeeccceEEE----Eeec-cccccccccccccCCCcceEEee--ccccceecccccC
Confidence 8999999 76554 5677899999999886541 1111 000000 00000111 122222 2233443332 22
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE----eCCCcEEEEecCCCCceeeEE
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG----SYSNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~----~~dg~i~iw~~~~~~~~~~~~ 423 (457)
..+.+||... .+.+.++...... .-+..+|+++++... ...++|.++|.++. +....+
T Consensus 249 ~~v~v~d~~~-wkvv~~I~~~G~g----------------lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl-~~~~~i 310 (369)
T PF02239_consen 249 DPVSVHDDYA-WKVVKTIPTQGGG----------------LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL-KVVKTI 310 (369)
T ss_dssp -TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-EEEE-H
T ss_pred Cccccchhhc-CeEEEEEECCCCc----------------ceeecCCCCccEEeeccCCCCCceEEEEECcCc-ceeEEE
Confidence 5666788875 7888888876554 258889999999987 45589999999988 444444
Q ss_pred ec-CCCcceeeeeccCCcceeccc
Q 012721 424 EA-GKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 424 ~~-~~~~v~~~~~~p~~~~~~~~~ 446 (457)
.. -...+..+.|+++|.....+.
T Consensus 311 ~~~~~~~~~h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 311 TPGPGKRVVHMEFNPDGKEVWVSV 334 (369)
T ss_dssp HHHHT--EEEEEE-TTSSEEEEEE
T ss_pred eccCCCcEeccEECCCCCEEEEEE
Confidence 32 234588999999998877643
No 238
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.49 E-value=8.2e-13 Score=110.79 Aligned_cols=191 Identities=9% Similarity=0.036 Sum_probs=138.9
Q ss_pred CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
-..+|+|.+|++|...+|.+ ....|.||... ..+..... +++..|...|+.|+|+|.. +.|++++.|..-++|
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~-~~~~w~~~----htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw 82 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSML-GADLWEPA----HTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW 82 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEec-CCCCceec----eehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence 34589999999999999999 99999999988 44433322 4578899999999999998 999999999999999
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce--e-Eeeecccc
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV--A-TFKIHEHL 371 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~--~-~~~~~~~~ 371 (457)
....+..-..... +.-++..++++.|+|.++.+|+|+. ..|.+|-++.+..-. + .-+.+...
T Consensus 83 ~~~~~~~Wkptlv--------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 83 TQPSGGTWKPTLV--------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred ccCCCCeecccee--------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 9855432211111 2334678999999999999999987 888888876422211 0 11112222
Q ss_pred ccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC-----CCC------------ceeeEEecCCCcceeee
Q 012721 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG-----VGS------------AGGITVEAGKNENRKPI 434 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~-----~~~------------~~~~~~~~~~~~v~~~~ 434 (457)
|++++|+|++-+|+.|+.|+..+|+..- +.. .....+....+.+..+.
T Consensus 149 ---------------v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 149 ---------------VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred ---------------eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence 2799999999999999999999998642 110 11112224567789999
Q ss_pred eccCCcce
Q 012721 435 LQAAPRAR 442 (457)
Q Consensus 435 ~~p~~~~~ 442 (457)
|+|+|...
T Consensus 214 fs~sG~~l 221 (361)
T KOG1523|consen 214 FSPSGNRL 221 (361)
T ss_pred eCCCCCEe
Confidence 99887543
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=8e-11 Score=112.06 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=133.0
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+....| +|+|+.|+..+.+ ..|.+|++.+++...+.
T Consensus 199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------------------------------------- 239 (430)
T PRK00178 199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------------------------------------- 239 (430)
T ss_pred CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------------------------
Confidence 56888999 7899998876643 36888888877554321
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
...+.+...+|+|||+.|+.. .++ .|++||+. .+.... +..+
T Consensus 240 -------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~ 285 (430)
T PRK00178 240 -------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSR--------VTNH 285 (430)
T ss_pred -------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEE--------cccC
Confidence 111234468899999988753 444 68888988 444333 2334
Q ss_pred CCceEEEEEecCCccEEEEEc-cCC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~-~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
........|+|+| +.|+..+ .+| .|.++|+.+++.. ++... ........|+|+|++|+
T Consensus 286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EeecC--------------CCCccceEECCCCCEEE
Confidence 4455677899999 6665554 344 5667777665422 11111 11234578999999998
Q ss_pred EEec----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCC
Q 012721 344 SRDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 416 (457)
Q Consensus 344 s~~~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~ 416 (457)
.... ..|.+||+.+ ++ ...+.. .... ....|+|||+.|+..+.+ ..|+++++..+
T Consensus 347 ~~~~~~~~~~l~~~dl~t-g~-~~~lt~-~~~~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQR-GS-VRILTD-TSLD---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEccCCceEEEEEECCC-CC-EEEccC-CCCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 6542 3578888864 33 233321 1111 257899999998876654 34677777533
Q ss_pred CceeeEEecCCCcceeeeeccC
Q 012721 417 SAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
....+..+.+.+...+|+|-
T Consensus 409 --~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 --VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --ceEECcCCCCCcCCCccCCC
Confidence 33445555667788888874
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.1e-10 Score=94.81 Aligned_cols=304 Identities=12% Similarity=0.137 Sum_probs=183.8
Q ss_pred hhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeC---CCeEEEEEecC--CccCCCcccchhhhhhcccccccC
Q 012721 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTS 87 (457)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
.|++...-++........+.+.++=|+|+|++++|.++-. +|.|.-|.++. +...
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------------------- 79 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-------------------- 79 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence 3555533444445555667889999999999999988754 57788888875 3321
Q ss_pred CCccceee--eeccCCccccccccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEecc-cceeEEEeecCCCceee
Q 012721 88 HPEYRYKT--EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSS 163 (457)
Q Consensus 88 ~~~~~~~~--~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~ 163 (457)
++. .+.+ .+-..+++ ++++++++++. .-|.|.++-++. |.+......-.+.
T Consensus 80 -----~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~---- 134 (346)
T COG2706 80 -----FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT---- 134 (346)
T ss_pred -----EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC----
Confidence 111 1122 23367888 78999998886 458899998865 4433221110000
Q ss_pred eeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeE
Q 012721 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRI 241 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i 241 (457)
+. . ... ......+.+..+.|++++|++. .--.|
T Consensus 135 -------g~--------------------------------~-p~~-----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 135 -------GS--------------------------------G-PHE-----RQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred -------CC--------------------------------C-CCc-----cccCCccceeeeCCCCCEEEEeecCCceE
Confidence 00 0 000 1112237788999999999987 56689
Q ss_pred EEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE-EccCCeEEEEEccCC--eee-cccccccccccccc
Q 012721 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQS--ALC-DHSARILRDAAESH 317 (457)
Q Consensus 242 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg~i~lwd~~~~--~~~-~~~~~~~~~~~~~~ 317 (457)
.+|++. .+....... ..+ ........|.|+|++ ++..+ .-.+++|.+|..... +.. .+.+..+..
T Consensus 170 ~~y~~~-dg~L~~~~~---~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~----- 238 (346)
T COG2706 170 FLYDLD-DGKLTPADP---AEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE----- 238 (346)
T ss_pred EEEEcc-cCccccccc---ccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc-----
Confidence 999998 444332211 112 233556889999999 66554 457999999998874 211 001111111
Q ss_pred CcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeecc--ccccccccccCCCCccccceEEEc
Q 012721 318 GSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVS 393 (457)
Q Consensus 318 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s 393 (457)
.|.+ ..+...+..+|||++|.++.- ..|-+|.+...+..+....... +..+ ..+.|+
T Consensus 239 ----dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P--------------R~F~i~ 299 (346)
T COG2706 239 ----DFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP--------------RDFNIN 299 (346)
T ss_pred ----ccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC--------------ccceeC
Confidence 0111 356788999999999998864 7899998875444343332211 1111 578999
Q ss_pred CCCcEEEEEeCCC-cEEEEecCCCCceeeEEe--cCCCcceeeeec
Q 012721 394 GDGLHFATGSYSN-LLRIFSHGVGSAGGITVE--AGKNENRKPILQ 436 (457)
Q Consensus 394 ~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~ 436 (457)
+++++|+++..|+ .|.+|......-.+..+. .......||.|.
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 9999999988754 688887653311222222 233344555554
No 241
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=5e-13 Score=117.41 Aligned_cols=255 Identities=16% Similarity=0.198 Sum_probs=177.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
-.-+.+.++.+|.+|+.|+..|.|..+|..++... .++..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v------------- 169 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINV------------- 169 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeeh-------------
Confidence 35578999999999999999999999999988752 12221
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
...|.++.|+ .+.++||++ ....+.+||-..-++..+
T Consensus 170 ~Etv~Dv~~L--Hneq~~AVA-QK~y~yvYD~~GtElHCl---------------------------------------- 206 (545)
T KOG1272|consen 170 METVRDVTFL--HNEQFFAVA-QKKYVYVYDNNGTELHCL---------------------------------------- 206 (545)
T ss_pred hhhhhhhhhh--cchHHHHhh-hhceEEEecCCCcEEeeh----------------------------------------
Confidence 2578999995 555565555 456789998665443322
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
. ....|..+.|-|..-+|+++ ..|.++--|+. .++.+.. +....+.+.
T Consensus 207 ----------------------k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~-------~~t~~G~~~ 255 (545)
T KOG1272|consen 207 ----------------------K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVAS-------IRTGAGRTD 255 (545)
T ss_pred ----------------------h-hcCchhhhcccchhheeeecccCCceEEEeec-hhhhhHH-------HHccCCccc
Confidence 1 12368889999999899998 99999999998 5665543 333457778
Q ss_pred EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcE
Q 012721 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i 350 (457)
.++-+|-. ..+-+|...|+|.+|.....+.+. + +..|.++|.++++.++|+|+|+.+ |..+
T Consensus 256 vm~qNP~N-aVih~GhsnGtVSlWSP~skePLv---K--------------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 256 VMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLV---K--------------ILCHRGPVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred hhhcCCcc-ceEEEcCCCceEEecCCCCcchHH---H--------------HHhcCCCcceEEECCCCcEEeecccccce
Confidence 88889987 899999999999999988765331 1 244678999999999999999765 6999
Q ss_pred EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec-CCCC-ce--eeEEecC
Q 012721 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH-GVGS-AG--GITVEAG 426 (457)
Q Consensus 351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~-~~~~-~~--~~~~~~~ 426 (457)
+|||+++ ...+.++...... ..+++|..|. || .+....|.||.- -.+. .. ...-..-
T Consensus 318 kIWDlR~-~~ql~t~~tp~~a----------------~~ls~Sqkgl-LA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~ 378 (545)
T KOG1272|consen 318 KIWDLRN-FYQLHTYRTPHPA----------------SNLSLSQKGL-LA-LSYGDHVQIWKDALKGSGHGETPYMNHRC 378 (545)
T ss_pred eEeeecc-ccccceeecCCCc----------------cccccccccc-ee-eecCCeeeeehhhhcCCCCCCcchhhhcc
Confidence 9999997 3444444332111 3688886553 33 344456899953 2211 11 2222222
Q ss_pred CCcceeeeeccC
Q 012721 427 KNENRKPILQAA 438 (457)
Q Consensus 427 ~~~v~~~~~~p~ 438 (457)
.++|..+.|-|-
T Consensus 379 ~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 379 GGPVEDLRFCPY 390 (545)
T ss_pred CcccccceeccH
Confidence 457777777664
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=4.8e-10 Score=101.40 Aligned_cols=308 Identities=10% Similarity=0.105 Sum_probs=189.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.......++|++|+++|.+.. ..++|++...+.. .++.+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~--------------------------~lt~~~------------- 73 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKV--------------------------VLCVEL------------- 73 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcE--------------------------EEEecc-------------
Confidence 345788999999999988764 5799999877642 111111
Q ss_pred ccCcEEEEEEEecCCCCEEEEe-----eC-----CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721 112 IEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~-----s~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
..+.++.| +|-+++|.+- .. .-.+++|++.++.....+...... .-.
T Consensus 74 --~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~-------------------~W~ 130 (566)
T KOG2315|consen 74 --KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN-------------------GWV 130 (566)
T ss_pred --ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc-------------------Ccc
Confidence 23788888 7888888772 12 245779999885433222211111 012
Q ss_pred ceeccCCcc---ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEE------eCCCeEEEEEcCCCc
Q 012721 182 FAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVS------ADDLRINLWNLEISD 250 (457)
Q Consensus 182 ~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~------~~d~~i~iwd~~~~~ 250 (457)
..+..+..+ ...+.+.+++..... .... .-|...|+.+.++|. ...+|+ |.-..|+||... ..
T Consensus 131 ~qfs~dEsl~arlv~nev~f~~~~~f~--~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~-~~ 204 (566)
T KOG2315|consen 131 PQFSIDESLAARLVSNEVQFYDLGSFK--TIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP-EE 204 (566)
T ss_pred cccccchhhhhhhhcceEEEEecCCcc--ceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc-cc
Confidence 223333332 234478888876521 1111 235678889999885 334444 145689999876 22
Q ss_pred ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc--C---------CeEEEEEccCCeeeccccccccccccccCc
Q 012721 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSARILRDAAESHGS 319 (457)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--d---------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
...+.+..+ ++ ....-..+.|++-|..+|+..+. | .+++++++...... +....
T Consensus 205 ~~~~~~a~k--sF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~---V~L~k-------- 269 (566)
T KOG2315|consen 205 GQHQPVANK--SF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS---VPLLK-------- 269 (566)
T ss_pred cccchhhhc--cc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE---EecCC--------
Confidence 222211111 11 11223457788887455555442 2 35777777732211 11111
Q ss_pred ccceeccccceEEEEEccCCCeEEEE-e-c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721 320 KSFFTEIIASISDIKFANDGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 320 ~~~~~~h~~~v~~~~~s~~g~~l~s~-~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 396 (457)
.++|.+++|+|+|+-+++. + . -++.|||++ +.++..+... .. .++-|+|.|
T Consensus 270 -------~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~eg--pR---------------N~~~fnp~g 323 (566)
T KOG2315|consen 270 -------EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEG--PR---------------NTAFFNPHG 323 (566)
T ss_pred -------CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCC--Cc---------------cceEECCCC
Confidence 4789999999999887754 3 3 899999997 7777776433 22 479999999
Q ss_pred cEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccccccccc
Q 012721 397 LHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 397 ~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
++|+.++.+ |.+-|||+.+. +.+..+.+ ...+-..|+|||.-.+. ...++++|
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a--~~tt~~eW~PdGe~flT--ATTaPRlr 379 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNR-KLIAKFKA--ANTTVFEWSPDGEYFLT--ATTAPRLR 379 (566)
T ss_pred CEEEEeecCCCCCceEEEeccch-hhcccccc--CCceEEEEcCCCcEEEE--EeccccEE
Confidence 999988764 78999999985 55555543 44455689999998888 45554444
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=2e-10 Score=102.61 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=80.5
Q ss_pred CCCCceEEEEEecCCccEEEEE--ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~--~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
...++|...+|.|.+ +.+++. -.+-.+.++|++.. +. ..+. ...=..+.|+|.++++
T Consensus 272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l~----~~~P---------------e~~rNT~~fsp~~r~i 330 (561)
T COG5354 272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-LR----FYFP---------------EQKRNTIFFSPHERYI 330 (561)
T ss_pred cccccceeeeecccC-CceeEEecccccceeecccccc-eE----EecC---------------CcccccccccCcccEE
Confidence 456889999999988 544443 47888999999885 11 1111 1344567899999999
Q ss_pred EEEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe------CCCcEEEEe
Q 012721 343 LSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------YSNLLRIFS 412 (457)
Q Consensus 343 ~s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~------~dg~i~iw~ 412 (457)
+.++ + |.|-+||.....+.+..+.+... .-+.|+||++++.+.. .|..|.||+
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-----------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-----------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EEecCCccccceEEeccCCceEEEEEeecCCc-----------------eEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 8754 2 99999998642333435554443 3578999999988764 388999999
Q ss_pred cCCC
Q 012721 413 HGVG 416 (457)
Q Consensus 413 ~~~~ 416 (457)
+...
T Consensus 394 v~g~ 397 (561)
T COG5354 394 VYGA 397 (561)
T ss_pred ecCc
Confidence 8754
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=5.6e-10 Score=102.35 Aligned_cols=271 Identities=13% Similarity=0.081 Sum_probs=155.5
Q ss_pred CCEEE-EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEE
Q 012721 44 GDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (457)
Q Consensus 44 ~~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (457)
+++++ +-..++.|.|.|..+.+. +..+.... ..-..+.|
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~---------------------------~~~i~~~~------------~~h~~~~~- 44 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKV---------------------------VARIPTGG------------APHAGLKF- 44 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SE---------------------------EEEEE-ST------------TEEEEEE--
T ss_pred ccEEEEEecCCCEEEEEECCCCeE---------------------------EEEEcCCC------------CceeEEEe-
Confidence 34554 456689999999887663 34444332 22234566
Q ss_pred ecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (457)
Q Consensus 123 ~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 202 (457)
++||+++++++.|+.|.++|+.+++....+..
T Consensus 45 -s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----------------------------------------------- 76 (369)
T PF02239_consen 45 -SPDGRYLYVANRDGTVSVIDLATGKVVATIKV----------------------------------------------- 76 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------------------------------------------
T ss_pred -cCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------------------------------------------
Confidence 89999999999999999999999887655432
Q ss_pred CccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (457)
Q Consensus 203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 280 (457)
......+++++||++++++ ..+.+.++|.+ ..+.++.+.............+..+..+|..+
T Consensus 77 ---------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 77 ---------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp ---------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred ---------------CCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCC
Confidence 1235689999999999887 79999999998 56666655433221222445677888888883
Q ss_pred cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCC
Q 012721 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD 358 (457)
Q Consensus 281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~ 358 (457)
.+++.--+.+.|.+.|....+... .+.+.. ........|+|+++|++.+. . +.|-++|...
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~- 203 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT- 203 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-
T ss_pred EEEEEEccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-
Confidence 455555666888888876642210 011111 23567889999999987764 3 8999999875
Q ss_pred CCceeEeee----ccccccccccccCCCCccccceEEEcC--CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721 359 STPVATFKI----HEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 432 (457)
Q Consensus 359 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 432 (457)
++.+..+.. |......+ . ... ....|.. .+...++.-....+.+|+..+. +....+.....+ ..
T Consensus 204 ~k~v~~i~~g~~p~~~~~~~~---p--hp~---~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 204 GKLVALIDTGKKPHPGPGANF---P--HPG---FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPTQGGG-LF 273 (369)
T ss_dssp TEEEEEEE-SSSBEETTEEEE---E--ETT---TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE-SSSS---
T ss_pred ceEEEEeeccccccccccccc---c--CCC---cceEEeeccccceecccccCCccccchhhcC-eEEEEEECCCCc-ce
Confidence 555554432 11111000 0 000 1223322 2333333333345667898887 677888877777 88
Q ss_pred eeeccCCcceecc
Q 012721 433 PILQAAPRARRSS 445 (457)
Q Consensus 433 ~~~~p~~~~~~~~ 445 (457)
+..||+++-....
T Consensus 274 i~thP~s~~vwvd 286 (369)
T PF02239_consen 274 IKTHPDSRYVWVD 286 (369)
T ss_dssp EE--TT-SEEEEE
T ss_pred eecCCCCccEEee
Confidence 8889998877663
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.2e-11 Score=119.17 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=122.1
Q ss_pred EeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721 225 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (457)
Q Consensus 225 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~ 303 (457)
-++++.-++++| --+.|.+|+........ .+.+|.+.|.++.++.+| .++++.|+|.++|+|++.+.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence 346677788888 89999999988333333 268999999999999999 99999999999999999987533
Q ss_pred ccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCC
Q 012721 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 382 (457)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (457)
. ....+|...++.++|.|+ ++++++ |.+.++|+.+ +..+..+.+|...-
T Consensus 211 ~----------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~---------- 260 (967)
T KOG0974|consen 211 G----------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKG---------- 260 (967)
T ss_pred C----------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhcc----------
Confidence 1 123678999999999998 777765 5999999875 67777888886542
Q ss_pred CccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 383 ~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+..++..++...++|++.|+.+++|++...
T Consensus 261 ----iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 261 ----IWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ----eeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 268899999999999999999999998754
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.6e-10 Score=106.40 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=103.9
Q ss_pred eeEEEeCCCCCEEEEe--CCC----eEEEEEcCCC--cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCe
Q 012721 221 INSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF 291 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~ 291 (457)
....+|+|||+.|+.. .+| .+.+|++... +...++ ..+........+|+||| +.|+..+ .+|.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~ 304 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGR 304 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCC
Confidence 3457899999988864 223 3444666521 222222 11222334567999999 7666554 5676
Q ss_pred EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c---CcEEEEeccCCCCceeEeee
Q 012721 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~ 367 (457)
..+|.+...... ...+.+ ..+...+....|+|||+.|+... . ..|.+||+.. ++. ..+..
T Consensus 305 ~~ly~~~~~~~g-~~~~~l-------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~ 368 (428)
T PRK01029 305 PRIYIMQIDPEG-QSPRLL-------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTT 368 (428)
T ss_pred ceEEEEECcccc-cceEEe-------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccC
Confidence 566644321000 000111 11224567889999999998643 2 4789999874 433 33332
Q ss_pred ccccccccccccCCCCccccceEEEcCCCcEEEEEeC---CCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 439 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 439 (457)
..... ....|+|||++|+.... ...|++|++.+++ ... +....+.+...+|+|..
T Consensus 369 ~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~-~~~-Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 369 SPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKK-TRK-IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEE-eecCCCcccCceecCCC
Confidence 22111 46899999998875443 3568899998773 333 33345667788888753
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=1.5e-10 Score=110.13 Aligned_cols=181 Identities=15% Similarity=0.092 Sum_probs=117.1
Q ss_pred CCCCCeeEEEeCCCCCEEEEe-CC---CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE-EEccCC
Q 012721 216 AHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (457)
Q Consensus 216 ~h~~~v~~~~~~~~~~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg 290 (457)
.+...+...+|+|||+.|+.+ .+ ..|++||+. .+....+ ..+...+.+++|+|+| +.|+ +.+.++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~-~g~~~~~--------~~~~~~~~~~~~spDg-~~l~~~~~~~~ 256 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA-TGQREKV--------ASFPGMNGAPAFSPDG-SKLAVSLSKDG 256 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEe--------ecCCCCccceEECCCC-CEEEEEECCCC
Confidence 344567888999999999876 32 579999998 4433322 2234556678999999 6554 455544
Q ss_pred --eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--C--cEEEEeccCCCCceeE
Q 012721 291 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVAT 364 (457)
Q Consensus 291 --~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~--~i~~wd~~~~~~~~~~ 364 (457)
.|.+||+.+++.. .+.. +........|+|+|+.|+..++ + .|+++|+.. ++ ...
T Consensus 257 ~~~i~~~d~~~~~~~----~l~~--------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~ 316 (417)
T TIGR02800 257 NPDIYVMDLDGKQLT----RLTN--------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRR 316 (417)
T ss_pred CccEEEEECCCCCEE----ECCC--------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 5888888776422 1111 1223446789999998886543 3 577777753 33 333
Q ss_pred eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (457)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 441 (457)
+..+.... ....|+|||++|+.++.++ .|.+||+.++. . ..+... .......|+|++..
T Consensus 317 l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 317 LTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-E-RVLTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred eecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-e-EEccCC-CCCCCceECCCCCE
Confidence 33232221 4789999999999888776 79999998863 2 222222 23456789999876
Q ss_pred eec
Q 012721 442 RRS 444 (457)
Q Consensus 442 ~~~ 444 (457)
...
T Consensus 379 l~~ 381 (417)
T TIGR02800 379 ILY 381 (417)
T ss_pred EEE
Confidence 665
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.3e-10 Score=110.70 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=124.4
Q ss_pred cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..+.+.+.+.+|+|||+.||..+.+ ..|.+|++.+++.. .+..+.
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-------------------------~l~~~~------- 242 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------------------QITNFE------- 242 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-------------------------EccCCC-------
Confidence 3567789999999999998876533 36888898876531 111122
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEE-eeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
+.+....| +|+|+.|+. .+.++ .|.+||+.++....+
T Consensus 243 --------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------ 282 (430)
T PRK00178 243 --------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------------------------------ 282 (430)
T ss_pred --------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------------------------------
Confidence 23445788 789988874 44444 577778877654332
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeec
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDM 258 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~ 258 (457)
..+........|+|||+.|+.. .++ .|+++|+. .++..++.
T Consensus 283 --------------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt-- 327 (430)
T PRK00178 283 --------------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT-- 327 (430)
T ss_pred --------------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee--
Confidence 1222334567899999987664 333 57777876 34433321
Q ss_pred CCCcccCCCCceEEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
..+ .......|+|+| +.|+..+. ++ .|.+||+.+++.. .+.. ........|
T Consensus 328 ----~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~~-----~lt~--------------~~~~~~p~~ 381 (430)
T PRK00178 328 ----FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSVR-----ILTD--------------TSLDESPSV 381 (430)
T ss_pred ----cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCEE-----EccC--------------CCCCCCceE
Confidence 111 223456899999 77766654 33 5788898876432 1111 011224589
Q ss_pred ccCCCeEEEEe-c---CcEEEEeccCCCCceeEeeec
Q 012721 336 ANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 336 s~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~~ 368 (457)
+|+|+.++..+ + ..+.++++. +.....+..+
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~ 416 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA 416 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence 99999998654 2 346666664 4444444433
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=4.9e-11 Score=101.27 Aligned_cols=204 Identities=10% Similarity=0.175 Sum_probs=135.7
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
-..+++++++.++...|+.|-..|++.=+.+...-. ...+.+....|.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~--------- 114 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ--------- 114 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh---------
Confidence 367899999999999999999999998887653221 112344556677
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..|..+-| +...+.+++.+.|..+.---.+.+...--.. .........+.....|
T Consensus 115 ---~~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--------------------~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 115 ---ARVSAIVF--SLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--------------------FETPASALQFDALYAF 169 (404)
T ss_pred ---cceeeEEe--cCCceeEEEeccccceEEEeeccCCcccceE--------------------eeccCCCCceeeEEEE
Confidence 88999999 5667789999999887433333332211110 0000011111111122
Q ss_pred cccc--ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 191 TENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 191 ~~~~--~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
+.+. .+....+... .-..+..+ .+|.+.+.+++|.|....+++| .|..+.+||+- ...-... .+.+|.
T Consensus 170 vGd~~gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~ 240 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHN 240 (404)
T ss_pred ecccccceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccch
Confidence 1111 2222222211 11223333 8999999999999999999999 99999999997 4433332 368899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCe
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~ 301 (457)
..|..+...+.- ..+.+++.||.|.+||++...
T Consensus 241 ~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 241 DKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 999999988877 899999999999999998753
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=9.2e-11 Score=111.27 Aligned_cols=206 Identities=15% Similarity=0.151 Sum_probs=122.0
Q ss_pred ccCCceEEEEECCCCCEEEEEeC-CC--eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.+...+.+..|||||+.|+..+. ++ .|.+||+.+++.. .+..+.+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~~g------- 262 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSFPG------- 262 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCCCC-------
Confidence 45667889999999999887643 33 5788888776531 2222222
Q ss_pred cccccccCcEEEEEEEecCCCCEEEE-eeCCCe--EEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFIL-STNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
......| +|+|+.|+. .+.++. |.+||+.+++...+
T Consensus 263 --------~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------------------------------- 301 (448)
T PRK04792 263 --------INGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI------------------------------- 301 (448)
T ss_pred --------CcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-------------------------------
Confidence 2345788 789987775 455664 66667766654322
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~ 259 (457)
..+.......+|+||++.|+.. .++ .|+++|+. .++...+.
T Consensus 302 -------------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt--- 346 (448)
T PRK04792 302 -------------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT--- 346 (448)
T ss_pred -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe---
Confidence 1223345567899999988764 344 56666776 34433321
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
..+ ......+|+|+| ++|+..+. ++ .|.++|+.+++.. .+.. ........|+
T Consensus 347 ---~~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-----~lt~--------------~~~d~~ps~s 401 (448)
T PRK04792 347 ---FEG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-----VLTS--------------TRLDESPSVA 401 (448)
T ss_pred ---cCC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-----EccC--------------CCCCCCceEC
Confidence 122 223456899999 77766554 44 4555777765422 1111 0011234799
Q ss_pred cCCCeEEEEe-c-C--cEEEEeccCCCCceeEeeeccc
Q 012721 337 NDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 337 ~~g~~l~s~~-~-~--~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
|+|+.|+... + + .+++++.+ +.....+..+.+
T Consensus 402 pdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g 437 (448)
T PRK04792 402 PNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG 437 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence 9999988543 2 3 46677763 666666654433
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=2e-11 Score=103.62 Aligned_cols=250 Identities=14% Similarity=0.107 Sum_probs=148.3
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc---eeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+-|.+|.| ...|.+|++|..+|.|-++.-.... ......++.+.
T Consensus 26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe------------------------------- 72 (433)
T KOG1354|consen 26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE------------------------------- 72 (433)
T ss_pred cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeeeeeccC-------------------------------
Confidence 56889999 7899999999999999998643321 11111111000
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC---EEEEeCCCeEEEEEcCCCccee--------------
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF-------------- 253 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~~d~~i~iwd~~~~~~~~-------------- 253 (457)
.....++. ..-...|+.+.|.++++ +|+++.|.+|++|.+...+...
T Consensus 73 --------------pEFDYLkS--leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~ 136 (433)
T KOG1354|consen 73 --------------PEFDYLKS--LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI 136 (433)
T ss_pred --------------cccchhhh--hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcc
Confidence 00011111 12345688899987653 3444599999999887332211
Q ss_pred ---eeeecCCC-----------cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc
Q 012721 254 ---NIVDMKPS-----------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (457)
Q Consensus 254 ---~~~~~~~~-----------~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
++....+. --.+|..-|.+++++.|+ ..++++ .|=.|.+|++.-....- .+.+. .|
T Consensus 137 ~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sF---nIVDI---KP-- 206 (433)
T KOG1354|consen 137 TSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSF---NIVDI---KP-- 206 (433)
T ss_pred ceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCce---eEEEc---cc--
Confidence 01000110 124688889999999998 777765 57789999987543211 11111 11
Q ss_pred ccceeccccceEEEEEccCCC-eEE-EEecCcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 320 KSFFTEIIASISDIKFANDGQ-HLL-SRDYMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 320 ~~~~~~h~~~v~~~~~s~~g~-~l~-s~~~~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
..+..-..-|++..|+|..- .++ +.+.|+|++.|++...-+ .+.+.....+.+ ..+-...+-.|..+.|++
T Consensus 207 -~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~---rsffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 207 -ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS---RSFFSEIISSISDVKFSH 282 (433)
T ss_pred -cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc---hhhHHHHhhhhhceEEcc
Confidence 11122345688999999643 333 445599999999842111 111222222211 111122233457899999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 427 (457)
+|+||++-+. -+|++||++...++..+.+.|.
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence 9999998776 6899999977667788888774
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=1.9e-10 Score=95.75 Aligned_cols=164 Identities=19% Similarity=0.224 Sum_probs=109.9
Q ss_pred cCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeE
Q 012721 215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (457)
Q Consensus 215 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 292 (457)
+.|.-+++.+.|+. +.+++++| +|+.+..||++.++..+-. ..+-|...|.+|.-+|..+.+|++|+.|-.|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeecceEEEecCCCCCceEEEeccccce
Confidence 67888999999975 45678888 9999999999955543321 2356888899999888776899999999999
Q ss_pred EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC--CeEEEEecCcEEEEeccCC-CC---ceeEee
Q 012721 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMD-ST---PVATFK 366 (457)
Q Consensus 293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~~~i~~wd~~~~-~~---~~~~~~ 366 (457)
++||.|+... .+++. .-.+.|+.+.++|.- +.|+++-.+-.+|-+.... .+ .....+
T Consensus 236 ~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 236 RVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 9999996532 12222 113789999999964 3445554466667666431 12 223334
Q ss_pred eccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEE-EEecCCC
Q 012721 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR-IFSHGVG 416 (457)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~-iw~~~~~ 416 (457)
.|.... +...|.....+|||++ .|+.++ +|-.-++
T Consensus 299 ~hdSl~---------------YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDSLC---------------YGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccee---------------eccccccccceeeeeeccccceeeeeeeccC
Confidence 444332 3445533345677755 477755 7876665
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=6.9e-10 Score=100.22 Aligned_cols=320 Identities=13% Similarity=0.147 Sum_probs=171.2
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (457)
Q Consensus 36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (457)
+-+.|||-|.||+|--..| |.+|--.+-.. +..| .| ..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~RF-~H-------------p~ 251 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQRF-YH-------------PG 251 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHhc-cC-------------CC
Confidence 5689999999999998887 88996443221 1111 22 35
Q ss_pred EEEEEEEecCCCCEEEEeeC-----------CCeEEEEEecccceeEEEeecCCC--ceeeeeeccccccccccCCC---
Q 012721 116 INRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFP--FVSSENTLLAEKNFMNEHNP--- 179 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~-----------d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--- 179 (457)
|.-+.| ||+.++|++-+. ...+.|||+.+|...........+ .-.-..|+..+....+...+
T Consensus 252 Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sis 329 (698)
T KOG2314|consen 252 VQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSIS 329 (698)
T ss_pred ceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEE
Confidence 888999 789999999542 267999999999877655431111 00112222222111111110
Q ss_pred ------------CCcee--ccCCcccccc-ceEEEeccCccc-----------cccceeeccCCCCCeeEEEeCCCCCEE
Q 012721 180 ------------PSFAH--GYHLEWTENM-ATKIANVGNSVH-----------ARCQKVYPHAHDFNINSISNNSDCETF 233 (457)
Q Consensus 180 ------------~~~~~--~~~~~~~~~~-~i~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~l 233 (457)
.+..+ +.+-+|.+.+ .+..|..++... .+.+++. .-+.-.=..+.|-.+|.+|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEE
Confidence 00110 1122233333 344554443221 1111111 1111111235566678887
Q ss_pred EEe-C-------C---CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc---cCCeEEEEEccC
Q 012721 234 VSA-D-------D---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQ 299 (457)
Q Consensus 234 ~~~-~-------d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~ 299 (457)
+.- + . ..+-|+.++.....+..+ ...+.|...+|-|.| +.+++-+ ...++.+|-+.+
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeec
Confidence 762 1 1 124455555333333332 234789999999999 5554433 246788998875
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c-CcEEEEeccCCCCceeEeeecccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 375 (457)
.......++.++. ...+.+.|+|.|++++.+. . |.+.++|+....-.......|...
T Consensus 480 ~~~~~~lVk~~dk---------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a---- 540 (698)
T KOG2314|consen 480 NIKKPSLVKELDK---------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA---- 540 (698)
T ss_pred CCCchhhhhhhcc---------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc----
Confidence 3211112222222 4578899999999998753 3 899999986311111112223332
Q ss_pred ccccCCCCccccceEEEcCCCcEEEEEeCC------CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+.+.|.|.|+|+++++.- .--+||+++-. .+ -+...+......|-|.-|..++
T Consensus 541 ------------t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr--ll--~~~~i~~f~qF~WRPRPps~LS 599 (698)
T KOG2314|consen 541 ------------TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR--LL--KEDIIDRFKQFLWRPRPPSLLS 599 (698)
T ss_pred ------------ccceECCCCCEEEEeeehhhhccccceEEEEeecH--HH--HHHHHHHHHhhccCCCCCcccC
Confidence 579999999999998863 33445554422 10 0111233444556666555544
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=2.7e-08 Score=91.48 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=120.3
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecC------CCcccCCCCceEEEEEecCCccEEEEEc-cCC
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG 290 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg 290 (457)
.-..++++|++++|+++ .++.|.++++...+......... +.....-.....++.++|++ +++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCC
Confidence 44578999999999988 69999999998544443321110 00001123557899999999 6665554 556
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeec
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~ 368 (457)
.|.+|++............+.. .....-..+.|+|+++++....+ +.|.++++......+.....-
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 8999999775411000011111 11356788999999999987764 999999997322222221111
Q ss_pred cccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecC--CCCcee--eEEecCCCcceeeeeccCCccee
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG--VGSAGG--ITVEAGKNENRKPILQAAPRARR 443 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~--~~~~~~--~~~~~~~~~v~~~~~~p~~~~~~ 443 (457)
.... .-+... .....+.++|||++|+++.. +++|.+|++. ++ ... ..........+.+.++|++....
T Consensus 235 ~~~~----~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-~l~~~~~~~~~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 235 STLP----EGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-TLTLVQTVPTGGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp ESCE----TTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-TEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred eecc----cccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-ceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 1000 000000 01147899999999887664 6789999994 23 222 22222334478999999998777
Q ss_pred c
Q 012721 444 S 444 (457)
Q Consensus 444 ~ 444 (457)
.
T Consensus 308 V 308 (345)
T PF10282_consen 308 V 308 (345)
T ss_dssp E
T ss_pred E
Confidence 6
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5.1e-10 Score=104.05 Aligned_cols=269 Identities=14% Similarity=0.189 Sum_probs=173.8
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.......|++|+....|+|.|+.||.+++..+.+...... ...+... .....-.++.||.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~--------snLsmNQtLeGH~-------- 71 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLN----KSGLAAA--------SNLSMNQTLEGHN-------- 71 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccc----ccccccc--------cccchhhhhccCc--------
Confidence 3567889999999999999999999999999876543100 0000000 0112334688998
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.-+.| +.+.+.|-++..+|.|.+|-+-.|.......
T Consensus 72 ----~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi----------------------------------- 110 (1189)
T KOG2041|consen 72 ----ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI----------------------------------- 110 (1189)
T ss_pred ----ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh-----------------------------------
Confidence 89999999 6777788889999999999988775422110
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
......-|.+++|+.||..++.. .||.|.+=.++ +.+.... .+++.
T Consensus 111 ------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg~-- 157 (1189)
T KOG2041|consen 111 ------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKGQ-- 157 (1189)
T ss_pred ------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcchh--
Confidence 03345568899999999999999 99999888777 3333211 12221
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeee-------cc------------------------------------
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-------DH------------------------------------ 305 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~-------~~------------------------------------ 305 (457)
....+.|++|. ..++.+-..|.+++||.+..-.. ..
T Consensus 158 ~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 23467788887 77888888888999887643100 00
Q ss_pred ---ccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---------c-CcEEEEeccCCCCceeEeeeccccc
Q 012721 306 ---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---------Y-MNLKLWDIRMDSTPVATFKIHEHLR 372 (457)
Q Consensus 306 ---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---------~-~~i~~wd~~~~~~~~~~~~~~~~~~ 372 (457)
..+++.. ..++.+ .+..-.-.+....|+++|..||.++ | +.|.+|..- ++.+..++.....+
T Consensus 237 ~nGr~QiMR~-eND~~P--vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~I 311 (1189)
T KOG2041|consen 237 ANGRMQIMRS-ENDPEP--VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCI 311 (1189)
T ss_pred cCceehhhhh-cCCCCC--eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc--hhheEEEecCCcee
Confidence 0000000 000000 0111124577899999999999642 2 467777653 77788887776654
Q ss_pred cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+.++|-..|-.+|.+- |+.|++=+++
T Consensus 312 ---------------t~lsWEg~gLriA~Av-dsfiyfanIR 337 (1189)
T KOG2041|consen 312 ---------------TGLSWEGTGLRIAIAV-DSFIYFANIR 337 (1189)
T ss_pred ---------------eeeEEcCCceEEEEEe-cceEEEEeec
Confidence 6788877776666543 4555554444
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.3e-08 Score=87.88 Aligned_cols=244 Identities=11% Similarity=0.112 Sum_probs=154.4
Q ss_pred CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.++-|+| +++.++|.++-. +|.|..|.++. |++...-....
T Consensus 40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~------------------------------- 86 (346)
T COG2706 40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL------------------------------- 86 (346)
T ss_pred CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-------------------------------
Confidence 66888999 788888888753 57788887765 44433221100
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+ .+-..+++++++++++++ .-|.|.++-++..+.....+. ...|
T Consensus 87 --------------------------~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h 133 (346)
T COG2706 87 --------------------------PG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKH 133 (346)
T ss_pred --------------------------CC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeec
Confidence 11 223678999999999998 789999999975555443322 1223
Q ss_pred CCc----------eEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 267 TEV----------ITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 267 ~~~----------i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
.+. +....+.|++ ++|++.+ .-..|.+|++..+++.......++. ...-..|.|
T Consensus 134 ~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~F 198 (346)
T COG2706 134 TGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVF 198 (346)
T ss_pred CCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCC--------------CCCcceEEE
Confidence 333 7888999999 8888876 3356999999977654322222211 356788999
Q ss_pred ccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEe
Q 012721 336 ANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFS 412 (457)
Q Consensus 336 s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~ 412 (457)
+|++++...-++ ++|.+|..+.....+..++.+...- .-|..+.. .-.+.+++||++|.+... ...|.+|.
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP----~dF~g~~~--~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP----EDFTGTNW--AAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc----cccCCCCc--eeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 999999988765 9999999975434444444333221 01111111 147889999999987764 34788888
Q ss_pred cCCCCceeeEEe---cCCCcceeeeeccCCcceec
Q 012721 413 HGVGSAGGITVE---AGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 413 ~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~~~ 444 (457)
+......+.... .+....+...++|++.....
T Consensus 273 V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 273 VDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 765422222222 22222566666676655443
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.6e-09 Score=98.74 Aligned_cols=194 Identities=18% Similarity=0.289 Sum_probs=142.8
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEE
Q 012721 41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (457)
Q Consensus 41 s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 120 (457)
.|...|+|....||.++||+...++.. .++.+...+.+. ..+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~---------------------~e~~p~~~~s~t---------------~~~~~ 45 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQ---------------------QEFAPIASLSGT---------------CTYTK 45 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceee---------------------eeeccchhccCc---------------ceeEE
Confidence 355689999999999999999877642 122333333322 22222
Q ss_pred EEe------------------cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 121 WCA------------------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 121 ~~~------------------s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
|.- +.+-..++-|...|.|.+|++..++....+..
T Consensus 46 w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st--------------------------- 98 (541)
T KOG4547|consen 46 WGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLST--------------------------- 98 (541)
T ss_pred EEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEec---------------------------
Confidence 210 12333566678889999999888877654331
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
..|.+.|+++.++.+-..|.++ .|+.+..|+.. ..+.++.
T Consensus 99 --------------------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~------ 139 (541)
T KOG4547|consen 99 --------------------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI------ 139 (541)
T ss_pred --------------------------------CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee------
Confidence 5789999999999988899998 99999999998 6777766
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--- 338 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--- 338 (457)
+......+.+++.+||+ ..+++++ +.|++||+.+++.. .. |++|.++|.++.|--+
T Consensus 140 -~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kevv----~~-------------ftgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 140 -WKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEVV----IT-------------FTGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred -eccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceEE----EE-------------ecCCCcceEEEEEEEeccc
Confidence 45566778999999998 8888775 58999999998644 22 5678899999999877
Q ss_pred --CCeEEEEec--CcEEEEeccC
Q 012721 339 --GQHLLSRDY--MNLKLWDIRM 357 (457)
Q Consensus 339 --g~~l~s~~~--~~i~~wd~~~ 357 (457)
|.++.++.. ..+.+|-.+.
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccceeeeccccccceeEEEEEc
Confidence 788887653 6677787653
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.3e-09 Score=100.99 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=69.8
Q ss_pred eeEEEeCCCCCEEEEe--CCCeEEEE--EcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEE
Q 012721 221 INSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVR 293 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~ 293 (457)
....+|+|||+.|+.. .++...+| ++...+..... +..+...+....|+|+| +.|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEE
Confidence 4567999999987764 56655555 44311221221 23333456788999999 777765533 4689
Q ss_pred EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-Eec---CcEEEEeccC
Q 012721 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY---MNLKLWDIRM 357 (457)
Q Consensus 294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~---~~i~~wd~~~ 357 (457)
+||+.+++.. .+... ...+....|+|||++|+. +.. ..|+++|+..
T Consensus 355 v~dl~~g~~~----~Lt~~--------------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 355 VYDLATGRDY----QLTTS--------------PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEECCCCCeE----EccCC--------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9999887532 11111 124567899999998874 322 6788888863
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=1.2e-09 Score=91.15 Aligned_cols=158 Identities=11% Similarity=0.023 Sum_probs=113.6
Q ss_pred eeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
..++.|++.+..++++ .+|.+.+-+.. .....+. +.++.|...++...|+...++++.+|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4578889888889999 99999855543 2222221 347889999999999988888999999999999999994
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 377 (457)
.+. .++.. ...|...|.++.-+| .+.+|++|+. ..|++||.++-++++..-....+
T Consensus 198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG------- 255 (339)
T KOG0280|consen 198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG------- 255 (339)
T ss_pred Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccc-------
Confidence 321 34442 245678899998886 5789999996 99999999966788766543322
Q ss_pred ccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEecCCC
Q 012721 378 LYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 378 ~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~~~~~ 416 (457)
|..+.++|. +..|+++-.+| .+|-+++.+
T Consensus 256 ---------VWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 256 ---------VWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred ---------eEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 268888885 33344444433 566666554
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=122.04 Aligned_cols=217 Identities=19% Similarity=0.300 Sum_probs=154.3
Q ss_pred ccchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCC
Q 012721 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (457)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (457)
..++|-....-.+........+-..|.++.=+|...+.+||+.||.|++|....++..
T Consensus 2186 ~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v---------------------- 2243 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV---------------------- 2243 (2439)
T ss_pred ccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE----------------------
Confidence 3445554422222223333446678999999999999999999999999998776632
Q ss_pred ccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (457)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (457)
..++.-. . ..|+.+.| +..|+.+..+..||.+.+|.+...-.. .
T Consensus 2244 -----~~~rt~g----------~-s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~~---s--------------- 2287 (2439)
T KOG1064|consen 2244 -----VCFRTAG----------N-SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPYT---S--------------- 2287 (2439)
T ss_pred -----EEeeccC----------c-chhhhhhh--cccCCceeeeccCCceeecccCCccee---c---------------
Confidence 2222221 1 67899999 688999999999999999998732111 0
Q ss_pred cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe----CCCeEEEEE
Q 012721 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWN 245 (457)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd 245 (457)
-+.|......+.|-. ..++++ +++.+.+||
T Consensus 2288 --------------------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2288 --------------------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred --------------------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchh
Confidence 056777788888864 455552 678999999
Q ss_pred cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (457)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (457)
........-+ -..|.+.++++++.|.. ++|++|+.+|.|.+||++..++. ..+.
T Consensus 2322 tl~~~~~s~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~-------------- 2375 (2439)
T KOG1064|consen 2322 TLLPPMNSLV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQ-------------- 2375 (2439)
T ss_pred cccCccccee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhh--------------
Confidence 7744333222 25799999999999999 99999999999999999986543 1111
Q ss_pred cccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee
Q 012721 326 IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 326 h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~ 366 (457)
. +. ...++++|+. |.++||++.. -..+..+.
T Consensus 2376 ----~----~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p 2407 (2439)
T KOG1064|consen 2376 ----A----LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFP 2407 (2439)
T ss_pred ----h----hh-hhheeeccCcccceEEEEccc-cchhhcCc
Confidence 1 33 4678888876 9999999975 45555544
No 261
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=4.6e-11 Score=105.93 Aligned_cols=271 Identities=12% Similarity=0.116 Sum_probs=177.8
Q ss_pred ccccCCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 28 ELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
.-.|...|....|-| +..-+++++.||.+++=.+...... +-...+..|.
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~------------------------e~t~rl~~h~---- 232 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV------------------------ENTKRLAPHE---- 232 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce------------------------ecceeccccc----
Confidence 345888888888888 3467899999999998765432210 1123455566
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
++|..++..| .+...|.+++.|+.+.-.|+..+.........
T Consensus 233 --------g~vhklav~p-~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr----------------------------- 274 (559)
T KOG1334|consen 233 --------GPVHKLAVEP-DSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR----------------------------- 274 (559)
T ss_pred --------CccceeeecC-CCCCcccccccccceeeeeeccCCccceeeee-----------------------------
Confidence 8899999864 33457999999999999998876544332211
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCC---CCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcce-----eee
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHD---FNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC-----FNI 255 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~-----~~~ 255 (457)
..+. -..+.++.+|.. ..++++ .|..+++||.+.-.+. +..
T Consensus 275 -----------------------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~ 325 (559)
T KOG1334|consen 275 -----------------------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK 325 (559)
T ss_pred -----------------------------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence 1111 245678888854 477888 9999999998732111 111
Q ss_pred eecCCCcc-cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEE
Q 012721 256 VDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISD 332 (457)
Q Consensus 256 ~~~~~~~~-~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~ 332 (457)
+ -|..+ ....-.|++++|+.++ .-|+++..|-.|+++.-..+. -. .........+..+..+.+|.. .|-.
T Consensus 326 f--~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~-G~---~p~~~s~~~~~~k~vYKGHrN~~TVKg 398 (559)
T KOG1334|consen 326 F--CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGD-GS---EPDPSSPREQYVKRVYKGHRNSRTVKG 398 (559)
T ss_pred c--CCccccccCcccceeEEecCCc-cceeeeecccceEEecccccc-CC---CCCCCcchhhccchhhcccccccccce
Confidence 1 11111 1233569999999888 555556677778998433221 10 000000011222334566653 3666
Q ss_pred EEE-ccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721 333 IKF-ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 333 ~~~-s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i 410 (457)
+-| -|...|+++|+| |.|.||+-.+ ++.+.-+.+....+ .++.=+|--..||+.+-|.-|+|
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VV---------------NCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVV---------------NCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred eeeccCccceEEecCccceEEEEecch-hHHHHHhhcccceE---------------eccCCCCCCchhhccCCccceee
Confidence 655 588899999999 9999999875 77777777766654 47777888899999999999999
Q ss_pred EecCCC
Q 012721 411 FSHGVG 416 (457)
Q Consensus 411 w~~~~~ 416 (457)
|--.+.
T Consensus 463 WTP~~~ 468 (559)
T KOG1334|consen 463 WTPLTA 468 (559)
T ss_pred ecCCcc
Confidence 997554
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.1e-09 Score=99.14 Aligned_cols=243 Identities=10% Similarity=0.093 Sum_probs=146.9
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (457)
Q Consensus 36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (457)
++..|+.|..+.|-- ..+.+.+|+...-+.. .. +-|. ..
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~--------------------------~~--kl~~------------~~ 167 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTI--------------------------QH--KLSV------------SG 167 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccce--------------------------ee--eeec------------cc
Confidence 688999887654432 3457999998764321 11 1122 66
Q ss_pred EEEEEEEecCCCCEEEE-----eeCCCeEEEEEecccceeEEEeec--CCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 116 INRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMD--HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
|+.+.++|.+....+++ .+.=..+++|....+......... ...+-....|..... ..-++...
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt---------~LLvLast 238 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT---------ALLVLAST 238 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc---------eEEEEEEE
Confidence 88999976655666666 345578999987633222211110 001111122222111 12222222
Q ss_pred ccccc-------cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceeeeeec
Q 012721 189 EWTEN-------MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDM 258 (457)
Q Consensus 189 ~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~ 258 (457)
..+.. ..+.+.+++. ....+- -...++|.++.|+|+++.+++ | +-..+.|||++ +..+..+
T Consensus 239 dVDktn~SYYGEq~Lyll~t~g----~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df-- 309 (566)
T KOG2315|consen 239 DVDKTNASYYGEQTLYLLATQG----ESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF-- 309 (566)
T ss_pred eecCCCccccccceEEEEEecC----ceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC--
Confidence 22221 1455555541 111111 245789999999999988776 5 78999999998 3333221
Q ss_pred CCCcccCCCCceEEEEEecCCccEEEEEcc---CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
..++=.++-|+|.| ++|+.++- .|.+-+||+.+.+++ ..+.. ..-+-+.|
T Consensus 310 -------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i----~~~~a---------------~~tt~~eW 362 (566)
T KOG2315|consen 310 -------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLI----AKFKA---------------ANTTVFEW 362 (566)
T ss_pred -------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhc----ccccc---------------CCceEEEE
Confidence 23555778899999 88888774 588999999987644 23332 34566899
Q ss_pred ccCCCeEEEEe-------cCcEEEEeccCCCCceeEee
Q 012721 336 ANDGQHLLSRD-------YMNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 336 s~~g~~l~s~~-------~~~i~~wd~~~~~~~~~~~~ 366 (457)
+|||+++++++ |+.++||+.. +..+....
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt--G~~l~~~~ 398 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYT--GSLLHEKM 398 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEec--Cceeehhh
Confidence 99999999764 5889999995 66665443
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.2e-09 Score=97.95 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=115.3
Q ss_pred CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc
Q 012721 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (457)
Q Consensus 229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 307 (457)
+...++-| ..|.|.+|++. .++....+ .-..|.+.|.++.++.+- ..|.+++.|+.+..|+.......
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~---- 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII---- 137 (541)
T ss_pred CceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceee----
Confidence 45567778 99999999998 55554432 135799999999999887 89999999999999999887544
Q ss_pred ccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (457)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (457)
+.+.. ....+.+++.+|||..+++++ +.|++||+++ ++.+..|.+|.+++
T Consensus 138 ~~~~~-------------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v--------------- 187 (541)
T KOG4547|consen 138 RIWKE-------------QKPLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPV--------------- 187 (541)
T ss_pred eeecc-------------CCCccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcce---------------
Confidence 55554 235688999999999999988 8999999986 89999999999987
Q ss_pred ceEEEcCC-----CcEEEE-EeCCCcEEEEecCC
Q 012721 388 FECSVSGD-----GLHFAT-GSYSNLLRIFSHGV 415 (457)
Q Consensus 388 ~~~~~s~d-----~~~l~s-~~~dg~i~iw~~~~ 415 (457)
.+++|..+ |.++++ ...+.-+.+|-+..
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 46666555 666654 44566788888765
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.21 E-value=1.8e-07 Score=83.39 Aligned_cols=169 Identities=11% Similarity=0.060 Sum_probs=124.0
Q ss_pred CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-eEEEEEccCCeeecccc
Q 012721 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSA 307 (457)
Q Consensus 229 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~ 307 (457)
+|.+++...-|...|.+.. .+-.+++ ++...|.-..+..+. +-++.|..|| .+-+||.++++..
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~-~~~~iqv---------~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k---- 395 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPW-DGYSIQV---------GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK---- 395 (668)
T ss_pred CCcEEEEEecCcEEEECCC-CCeeEEc---------CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE----
Confidence 6788887777888888876 4555543 466668888888777 6789999998 8999999987532
Q ss_pred ccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccc
Q 012721 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386 (457)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (457)
++... -+.|.++..+|+|++++.+.+ ..+.+.|+++ ++....-+...+.+
T Consensus 396 r~e~~--------------lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~lI-------------- 446 (668)
T COG4946 396 RIEKD--------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGLI-------------- 446 (668)
T ss_pred EeeCC--------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEeccccccee--------------
Confidence 22221 367999999999999999988 8999999986 44433333334443
Q ss_pred cceEEEcCCCcEEEEEeCCC----cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 387 KFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 387 v~~~~~s~d~~~l~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+.+.|||++++||-+--+| .|+++|+.+++ +.-.....+--.+.+|-|+++-...
T Consensus 447 -tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K--iy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 447 -TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK--IYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred -EEEEEcCCceeEEEecCcceeeeeEEEEecCCCe--EEEecCCcccccCcccCCCCcEEEE
Confidence 7899999999999876655 69999999883 3333444555667778888765443
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=7.3e-10 Score=94.30 Aligned_cols=232 Identities=10% Similarity=0.088 Sum_probs=157.2
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLA 169 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (457)
..++..++||. +.|++....| ...-+++.+.|.++++|--.+ ++.-..+.
T Consensus 14 p~ll~~~eG~~------------d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~--------------- 64 (404)
T KOG1409|consen 14 PELLSKIEGSQ------------DDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIY--------------- 64 (404)
T ss_pred hhhhhhhcCch------------hhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhh---------------
Confidence 34666778888 7788877754 444589999999999996443 32221111
Q ss_pred cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (457)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (457)
.....+++++.+.++...|+.| .+|++.-+.+..
T Consensus 65 ---------------------------------------------~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 65 ---------------------------------------------HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred ---------------------------------------------hhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence 2234578899999999999999 999999998763
Q ss_pred CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-----------------------
Q 012721 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------- 305 (457)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~----------------------- 305 (457)
.-..... +.....|...+..+-|+-.. ..+++.+.|..+.---.+.+.....
T Consensus 100 dfnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 100 DFNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS 174 (404)
T ss_pred hhhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence 2222211 12356788999999988776 7888888776654322222211100
Q ss_pred -ccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCC
Q 012721 306 -SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS 383 (457)
Q Consensus 306 -~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (457)
.+..............++.+|.+.+.+++|.|..+.|.+|. |..+.+||+.-.......+.+|...+
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV----------- 243 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV----------- 243 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh-----------
Confidence 00111111112233356789999999999999999999985 59999999964334456677777765
Q ss_pred ccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 384 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 384 ~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
..+..-+.-+.+++++.||.|.+|+++..
T Consensus 244 ----~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 244 ----QALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ----hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 35555566778999999999999999865
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=4.6e-10 Score=94.24 Aligned_cols=266 Identities=15% Similarity=0.156 Sum_probs=154.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc---eeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+.|++|.| ...|.++++|...|.|.++.-.... ......++.+.
T Consensus 27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe------------------------------- 73 (460)
T COG5170 27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHE------------------------------- 73 (460)
T ss_pred ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhcccc-------------------------------
Confidence 67999999 7889999999999999998754432 11111111100
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC---CEEEEeCCCeEEEEEcCCCcc----------------
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---ETFVSADDLRINLWNLEISDQ---------------- 251 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~d~~i~iwd~~~~~~---------------- 251 (457)
.....++. ..-...|..+.|..++ .+|+++.|.+|++|.+.....
T Consensus 74 --------------~EFDYLkS--leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~ 137 (460)
T COG5170 74 --------------LEFDYLKS--LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPM 137 (460)
T ss_pred --------------cchhhhhh--ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccccccc
Confidence 00000110 1123457778886543 356666999999998863200
Q ss_pred --e---------------eeeeecCCC--cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccc
Q 012721 252 --C---------------FNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (457)
Q Consensus 252 --~---------------~~~~~~~~~--~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 312 (457)
. ..++..+|. .-..|...|.+++|+.+. ..++++ .|=.|.+|++...... ..+...
T Consensus 138 ~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~s---FnIVDi 212 (460)
T COG5170 138 GGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGS---FNIVDI 212 (460)
T ss_pred CCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-heeeec-cceeeeeccccccCCc---eEEEec
Confidence 0 011111221 124677788999999987 666654 5778999998754211 111111
Q ss_pred cccccCcccceeccccceEEEEEccCCC--eEEEEecCcEEEEeccCCCC-----ceeEeeeccccccccccccCCCCcc
Q 012721 313 AAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIF 385 (457)
Q Consensus 313 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (457)
.| ..+.....-|++..|+|... ++.+.+.|.|++-|++...- .+.........+. +-...+-
T Consensus 213 ---KP---~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~-----ff~eivs 281 (460)
T COG5170 213 ---KP---HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD-----FFEEIVS 281 (460)
T ss_pred ---cC---ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccch-----hHHHHhh
Confidence 01 01122235688999999643 33455569999999984211 1111111110000 0011112
Q ss_pred ccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC---------------cceeeeeccCCcceecc
Q 012721 386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---------------ENRKPILQAAPRARRSS 445 (457)
Q Consensus 386 ~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---------------~v~~~~~~p~~~~~~~~ 445 (457)
.+..+.|+++|++|++-+. -+|+|||++..+.++.++.-|.. .-..+.|+.|.....+|
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg 355 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSG 355 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccc
Confidence 3368899999999998776 68999999998888888866631 12345677776665553
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.14 E-value=1.3e-09 Score=94.90 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=67.9
Q ss_pred cCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (457)
Q Consensus 215 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 293 (457)
-+|-..++.++++||+++|+++ .|..|++-... .--.+..+ .-||.+.|..++.-++. .|++++.|++|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~~--~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDNY--LLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence 5899999999999999999999 99999998776 22233322 56899999999998874 699999999999
Q ss_pred EEEccCCeee
Q 012721 294 LVDMRQSALC 303 (457)
Q Consensus 294 lwd~~~~~~~ 303 (457)
+||+++++..
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999999765
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=3.1e-07 Score=82.50 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=78.7
Q ss_pred EEec-CCccEEEEEccCCeEEEEEccCCeeecc-ccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-----
Q 012721 274 EFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----- 346 (457)
Q Consensus 274 ~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----- 346 (457)
.|.+ +| .++....+ |+|.+.|+...+.... ...++.. ..... .-..+.+.-++++|+++.+....
T Consensus 200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~-----~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKAD-----GWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-ccccc-----ccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 3456 66 66666655 9999999765432211 0111111 00000 00123445599999998887632
Q ss_pred ----c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCCCCc
Q 012721 347 ----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSA 418 (457)
Q Consensus 347 ----~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~~~~ 418 (457)
+ +.|.++|..+ .+.+..+...... ..++++||++ +|++.+ .++.|.+.|..++ +
T Consensus 272 ~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~-k 333 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYIFDAETG-K 333 (352)
T ss_pred ccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEEEECcCC-e
Confidence 1 5799999986 7777776643332 5899999999 777666 5788999999999 4
Q ss_pred eeeEE
Q 012721 419 GGITV 423 (457)
Q Consensus 419 ~~~~~ 423 (457)
.+..+
T Consensus 334 ~i~~i 338 (352)
T TIGR02658 334 ELSSV 338 (352)
T ss_pred EEeee
Confidence 55554
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=4.6e-09 Score=101.91 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=142.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.+.|....+.-+...++.++.+..+.|||...+... ....+.+ +.
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~---------------------------~~i~~~e--r~------ 131 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVL---------------------------SKIQSDE--RC------ 131 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCcee---------------------------hhcCCCc--eE------
Confidence 345555566666788888888899999998766532 1111111 00
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
--..++-+-.+++.-++++|+.-+.|.+|+....+.
T Consensus 132 --~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~------------------------------------------ 167 (967)
T KOG0974|consen 132 --TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK------------------------------------------ 167 (967)
T ss_pred --EEEeEEEEeccCcEEEEEeccccccEEEEeccccCC------------------------------------------
Confidence 001122222256666888999999999999872211
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
+. .+.+|.+.|..+.++.||.++++. +|.++++|++++...... ..-+|+..+
T Consensus 168 -----------------p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-------~~fgHsaRv 221 (967)
T KOG0974|consen 168 -----------------PI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-------TGFGHSARV 221 (967)
T ss_pred -----------------cc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc-------cccccccee
Confidence 00 127999999999999999999999 999999999995443331 256899999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEEEEEccCCCeEEEEe-cC
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRD-YM 348 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~-~~ 348 (457)
..++|.|+ .+++++.|-+.++|+.....+ ..+.. |. ..++.++..++...++++. |+
T Consensus 222 w~~~~~~n---~i~t~gedctcrvW~~~~~~l-----~~y~~-------------h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 222 WACCFLPN---RIITVGEDCTCRVWGVNGTQL-----EVYDE-------------HSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred EEEEeccc---eeEEeccceEEEEEeccccee-----hhhhh-------------hhhcceeEEEEcCCceEEEeeccCc
Confidence 99999996 799999999999997655332 23333 32 4699999999888888875 59
Q ss_pred cEEEEeccC
Q 012721 349 NLKLWDIRM 357 (457)
Q Consensus 349 ~i~~wd~~~ 357 (457)
.+++||+..
T Consensus 281 ~lk~~~l~~ 289 (967)
T KOG0974|consen 281 TLKLWDLNG 289 (967)
T ss_pred chhhhhhhc
Confidence 999999853
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=1.3e-09 Score=101.76 Aligned_cols=301 Identities=15% Similarity=0.200 Sum_probs=185.0
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
-.+++.++..+|.|+-+|.++.-| +.+.|++..-. ..+.+..+..-
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~tpw---------- 68 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHITPW---------- 68 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------CceeeeccCcc----------
Confidence 467899999999999999999887 66778765432 11122222222
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.|-.+.|.|.+.-.+-++........+|++.. ...+..........++.+.|.+.+..++....
T Consensus 69 ----~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs---------- 134 (1081)
T KOG0309|consen 69 ----QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS---------- 134 (1081)
T ss_pred ----hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc----------
Confidence 26778887666555544444444455888654 33444444555556777777777666654433
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.+..+..||+.... .++..+ ..-......++|+. ++..+|+...+.|.+||.+.+...... +++|.
T Consensus 135 ---vdt~vh~wd~rSp~--~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s-------~K~~v 201 (1081)
T KOG0309|consen 135 ---VDTYVHAWDMRSPH--RPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS-------LKGHV 201 (1081)
T ss_pred ---ccccceeeeccCCC--cceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE-------ecccc
Confidence 23467788876432 222222 22334556788876 555666668899999999966655544 67788
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--eEEE-
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLS- 344 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s- 344 (457)
..+..++|+...-..+.+++.||+|++||......... +.... ..+|+.-.+-|-|+ ++.-
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt--------------~~piw~~r~~Pfg~g~~~mp~ 265 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTT--------------NFPIWRGRYLPFGEGYCIMPM 265 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eeccc--------------cCcceeccccccCceeEeccc
Confidence 99999999875446789999999999999876532111 11111 24566666666433 2221
Q ss_pred -E--------ecCcEEEEeccCCCCceeEeeeccccccccc-cccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEe
Q 012721 345 -R--------DYMNLKLWDIRMDSTPVATFKIHEHLRPKLC-DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFS 412 (457)
Q Consensus 345 -~--------~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~ 412 (457)
| .++.-..|+.....+++..+.+|...+-.+- +.. -.+.+.-| .-.|+|-+.|..+++|-
T Consensus 266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r--------~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR--------KECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc--------ccccCCCCccceeEEEeecCCceEeee
Confidence 1 1123334555545678999999998752110 000 01122222 22799999999999999
Q ss_pred cCCC
Q 012721 413 HGVG 416 (457)
Q Consensus 413 ~~~~ 416 (457)
+.+.
T Consensus 338 I~~~ 341 (1081)
T KOG0309|consen 338 IDSQ 341 (1081)
T ss_pred ccHH
Confidence 8764
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=2.9e-08 Score=81.95 Aligned_cols=169 Identities=13% Similarity=0.024 Sum_probs=110.3
Q ss_pred eeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
+.+++++++++++++. +...|..|.+...++.+.-+. ...-.+.-.+.+|+... ..+|++..||++.|||++.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----EAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----ecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence 7789999999999987 889999999885554433221 22334445778899988 8999999999999999998
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccCCC--eEEEEec-CcEEEEeccCCCCceeEeeeccccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 376 (457)
...... .. ...-..|.+.+..+.|++.|. +|..... +.+.+.|++. .+....+...+...
T Consensus 235 ~~tpm~----~~--------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~---- 297 (344)
T KOG4532|consen 235 MATPMA----EI--------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE---- 297 (344)
T ss_pred cccchh----hh--------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc----
Confidence 642211 10 111234789999999998663 3444433 8999999986 55544444333220
Q ss_pred cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
....+..+ +...|+.++..+.+.+++. +.=|++.+.
T Consensus 298 ~~~~tq~i---fgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 298 RKHNTQHI---FGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred cccccccc---ccccccCCCcccccccchh-hheeecccc
Confidence 00111122 4677887777776666643 445666544
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=3.2e-07 Score=95.55 Aligned_cols=187 Identities=13% Similarity=0.140 Sum_probs=105.4
Q ss_pred eEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecC--CCccc------CCCCceEEEEEecCCccEEEEEccCCe
Q 012721 222 NSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMD------DLTEVITSAEFHPIYCNLLAYSSSRGF 291 (457)
Q Consensus 222 ~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~------~~~~~i~~v~~~p~~~~~l~~~~~dg~ 291 (457)
..++++| ++.++++. .++.|++||.. .+... .+... ..... ..-.....|+++|++..++++-+.++.
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECC-CCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 4789999 45555665 88999999987 33322 11100 00001 112345779999998336666677899
Q ss_pred EEEEEccCCeeeccccccccccccccCcccce--------eccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce
Q 012721 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFF--------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV 362 (457)
Q Consensus 292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~ 362 (457)
|++||+.++.... ........+.....+ ...-..-..++++++|.++++-.. +.|++||..+ +. +
T Consensus 764 Irv~D~~tg~~~~----~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v 837 (1057)
T PLN02919 764 IRALDLKTGGSRL----LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-V 837 (1057)
T ss_pred EEEEECCCCcEEE----EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-E
Confidence 9999998754210 000000000000000 001112358899999987776655 9999999864 33 3
Q ss_pred eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
..+.+....... ..............++++++|+.+++-+.+++|++||+.+++
T Consensus 838 ~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 838 TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 333322110000 000000000011579999999988888899999999999874
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=1.5e-07 Score=96.04 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=99.4
Q ss_pred eEEEeCCCCCEEEEe-C---CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 222 NSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
.+++|.|.|++||+. . ...|.+|..+ |.....+.++ +......|..++|++++ ..||..-.|. |.+|-.
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTR 332 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEe
Confidence 478999999999996 2 4567777765 5555444433 23456789999999999 9999877665 999988
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEEec-CcEEEEec----cCC-C------CceeE
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDI----RMD-S------TPVAT 364 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~-~~i~~wd~----~~~-~------~~~~~ 364 (457)
.+-.-..+..-.+.. ...+..+.|+|... .|...+. |.+..+++ ... + ..+..
T Consensus 333 ~NYHWYLKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaV 398 (928)
T PF04762_consen 333 SNYHWYLKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAV 398 (928)
T ss_pred eCCEEEEEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEE
Confidence 774322221111111 12344477887532 2333332 44443332 110 0 01222
Q ss_pred eeeccccc--------cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 365 FKIHEHLR--------PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 365 ~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+.|..-.+ +...-.+.-.....|.+++|++++..+++-..||.|.+|.....
T Consensus 399 IDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 399 IDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 22211111 10000111111123478999999988999999999999986543
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=6.6e-08 Score=86.15 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=107.9
Q ss_pred cCCCCCeeEEEeCCCCCEEEEe-CCC-eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeE
Q 012721 215 HAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (457)
Q Consensus 215 ~~h~~~v~~~~~~~~~~~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 292 (457)
.+|.+.|.-..+.-+++-++.| .|| .+-|+|.+ .++... +.+.-+.|.++..+|+| +.++.+.....|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence 3566678777787778888888 888 99999998 454433 34566889999999999 999999999999
Q ss_pred EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE---ec--CcEEEEeccCCCCceeEeee
Q 012721 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY--MNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~---~~--~~i~~wd~~~~~~~~~~~~~ 367 (457)
.++|+.+++.. ..+. ...+-|+...|+|+++++|-+ +. ..|+++|+.. ++....-..
T Consensus 426 ~vididngnv~-----~idk------------S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT~ 487 (668)
T COG4946 426 WVIDIDNGNVR-----LIDK------------SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTTP 487 (668)
T ss_pred EEEEecCCCee-----Eecc------------cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecCC
Confidence 99999998643 2221 012569999999999999965 22 8899999974 454433322
Q ss_pred ccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 404 (457)
...- ++-+|.||+++|.--+.
T Consensus 488 ta~D----------------fsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 488 TAYD----------------FSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccc----------------cCcccCCCCcEEEEEec
Confidence 2211 47899999998876553
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.9e-07 Score=87.58 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=95.5
Q ss_pred CCeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCC--e
Q 012721 219 FNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--F 291 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg--~ 291 (457)
+......|+|||+.++.. .+..|+++|+. .+...++ ..+........|+||| +.|+..+ ..+ .
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~L--------T~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQI--------TNYPGIDVNGNFVEDD-KRIVFVSDRLGYPN 302 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEEc--------ccCCCccCccEECCCC-CEEEEEECCCCCce
Confidence 345567899999887653 34678888887 4444332 2222223455799999 6555554 334 5
Q ss_pred EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec----------CcEEEEeccCCCCc
Q 012721 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------MNLKLWDIRMDSTP 361 (457)
Q Consensus 292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----------~~i~~wd~~~~~~~ 361 (457)
|.++|+.+++.. ++... +. ....|+|+|++|+.... ..|.+.|+.. +.
T Consensus 303 Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~- 360 (419)
T PRK04043 303 IFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY- 360 (419)
T ss_pred EEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-
Confidence 777777765432 11111 11 12489999999985421 2577777764 33
Q ss_pred eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-C--cEEEEecCCCCceeeEEecCCCcceeee
Q 012721 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVGSAGGITVEAGKNENRKPI 434 (457)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 434 (457)
...+...... ....|+|||+.|+....+ + .+.+.++... ....+....+.+...+
T Consensus 361 ~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~--~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 361 IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN--KSFLFPLKVGKIQSID 418 (419)
T ss_pred eEECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCCC--eeEEeecCCCccCCCC
Confidence 3334332111 258999999988766543 3 3556666543 3444444445554443
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.8e-07 Score=87.58 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=64.6
Q ss_pred EEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---------
Q 012721 223 SISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------- 289 (457)
Q Consensus 223 ~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--------- 289 (457)
...|+|||+.|+.. ..+ .|+++|+. .+...++. ..+.. ...|+|+| +.|+.....
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt------~~g~~----~~~~SPDG-~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV------FHGKN----NSSVSTYK-NYIVYSSRETNNEFGKNT 348 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc------cCCCc----CceECCCC-CEEEEEEcCCCcccCCCC
Confidence 45799999887765 223 68888887 44443331 11211 24899999 766655533
Q ss_pred CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-C--cEEEEeccCCCCceeEe
Q 012721 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATF 365 (457)
Q Consensus 290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~--~i~~wd~~~~~~~~~~~ 365 (457)
..|.+.|+.++... .+.. ........|+|||+.|+... . + .+.+.++. +.....+
T Consensus 349 ~~I~v~d~~~g~~~-----~LT~--------------~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l 407 (419)
T PRK04043 349 FNLYLISTNSDYIR-----RLTA--------------NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN--YNKSFLF 407 (419)
T ss_pred cEEEEEECCCCCeE-----ECCC--------------CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC--CCeeEEe
Confidence 36788888776422 1111 01223578999999887543 2 3 35555554 5444444
Q ss_pred e
Q 012721 366 K 366 (457)
Q Consensus 366 ~ 366 (457)
.
T Consensus 408 ~ 408 (419)
T PRK04043 408 P 408 (419)
T ss_pred e
Confidence 4
No 277
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.8e-09 Score=92.08 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=119.6
Q ss_pred CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc
Q 012721 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (457)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 309 (457)
+-.+++|.+..|-+-|+++ +... . +. ..+.|.++.|...+ +++..|..+|.|..+|++.+..- ..
T Consensus 225 gyhfs~G~sqqv~L~nvet-g~~q-s-------f~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVET-GHQQ-S-------FQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG 289 (425)
T ss_pred eeeecccccceeEEEEeec-cccc-c-------cc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence 4445556788888888883 3222 1 22 45678889999888 99999999999999999986211 11
Q ss_pred ccccccccCcccceeccccceEEEEEcc-CCCeEEEEe-cCcEEEEeccCCCCc---eeEeeeccccccccccccCCCCc
Q 012721 310 LRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSI 384 (457)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~-~~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 384 (457)
+ .....-|.+.|+++..-. ++++|++.+ +|+|++||++. .+. +.++.+|.+....
T Consensus 290 ~---------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~---------- 349 (425)
T KOG2695|consen 290 W---------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY---------- 349 (425)
T ss_pred c---------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc----------
Confidence 1 112234678899988776 677777665 49999999986 455 8889998775321
Q ss_pred cccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC----cceeeeeccC
Q 012721 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAA 438 (457)
Q Consensus 385 ~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----~v~~~~~~p~ 438 (457)
.-+...+....|+++++|.-.+||.++.| ....++..... .+.+++|...
T Consensus 350 ---l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf~~s~~e~d~~sv~~~sr 403 (425)
T KOG2695|consen 350 ---LPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPFPYSASEVDIPSVAFDSR 403 (425)
T ss_pred ---cccccccccceEEEccCeeEEEEEecccC-ceeeccCCCCccccccccceehhcc
Confidence 23566778889999999999999999999 66665544333 3444444433
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.02 E-value=1.2e-07 Score=85.27 Aligned_cols=308 Identities=12% Similarity=0.079 Sum_probs=169.7
Q ss_pred CceEEEEECCCCCEEEEEeCCC---------------eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGG---------------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (457)
..|.-+.|||.++||.|=+..+ .+.+||..++..+.-..+.-++ .-+-++--++-...+...+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~--~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP--YLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc--ccccceeeeeecchhhhhh
Confidence 4688999999999999865433 4899999887753111000000 0000000000001111111
Q ss_pred ccCCcccc---------ccccccccCcEEEEEEEecCCCCEEEE-----eeCCCeEEEEEecccceeEEEeecCCCceee
Q 012721 98 QSHEPEFD---------YLKSLEIEEKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (457)
Q Consensus 98 ~~h~~~~~---------~~~~~~~~~~V~~v~~~~s~~~~~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 163 (457)
-+|+-.+. .++.+. ...|....|+|..++..|+. ...++++++|.+..+.......+-... -+.
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~-~~q 227 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS-GVQ 227 (561)
T ss_pred ccCeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec-ccE
Confidence 12111110 111111 15688888866545556665 457889999998866554443322111 112
Q ss_pred eeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCe
Q 012721 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLR 240 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~ 240 (457)
+.|......+++... ... ..+-.+-....+.++++. ...+++. .+-.++|...+|.|.++.+++ | .+..
T Consensus 228 LkW~~~g~~ll~l~~-t~~--ksnKsyfgesnLyl~~~~----e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 228 LKWQVLGKYLLVLVM-THT--KSNKSYFGESNLYLLRIT----ERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred EEEecCCceEEEEEE-Eee--ecccceeccceEEEEeec----cccccee-ccccccceeeeecccCCceeEEecccccc
Confidence 222222221111111 000 000001111245566554 2233333 245789999999998887765 5 8999
Q ss_pred EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeecccccccccccccc
Q 012721 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESH 317 (457)
Q Consensus 241 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~ 317 (457)
+.++|++ .. ....+ ....=..+.|+|.+ ++++.++-| |.|.+||......+. ..+.+
T Consensus 300 ~s~~~lr-~N-l~~~~---------Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~~---~~~~~----- 359 (561)
T COG5354 300 VSVFDLR-GN-LRFYF---------PEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKVA---GAFNG----- 359 (561)
T ss_pred eeecccc-cc-eEEec---------CCcccccccccCcc-cEEEEecCCccccceEEeccCCceEEE---EEeec-----
Confidence 9999998 33 22221 12233456799999 888887754 789999987754321 12222
Q ss_pred CcccceeccccceEEEEEccCCCeEEEEe-------cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceE
Q 012721 318 GSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (457)
Q Consensus 318 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 390 (457)
...+-+.|+||++++.+.. |..|+|||+. +..+. .. +.+
T Consensus 360 ----------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--g~~~f------el----------------~~~ 405 (561)
T COG5354 360 ----------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--GAKVF------EL----------------TNI 405 (561)
T ss_pred ----------CCceEeeccCCceEEEecCCCcccccCcceEEEEec--Cchhh------hh----------------hhc
Confidence 3456678999999998652 4789999995 44433 11 578
Q ss_pred EEcCCCcEEEEEeCCC
Q 012721 391 SVSGDGLHFATGSYSN 406 (457)
Q Consensus 391 ~~s~d~~~l~s~~~dg 406 (457)
.|.|.+++..+.+.+.
T Consensus 406 ~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 406 TWDPSGQYVTTSSSCP 421 (561)
T ss_pred cccCCcccceeeccCC
Confidence 8999888888777655
No 279
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.2e-08 Score=88.51 Aligned_cols=325 Identities=15% Similarity=0.147 Sum_probs=195.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|+.+.-+. .+++.+++.||.++.|.-.... ..+++..+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH-------
Confidence 45888888886654 5799999999999999855422 224667778887
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeC-CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++. +-++-++.+.+. |..++++|+++-.....++...-+...+....+.+. ..+..
T Consensus 54 -----~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~-----------~s~IA 115 (558)
T KOG0882|consen 54 -----GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDK-----------ISLIA 115 (558)
T ss_pred -----HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCe-----------eeeEE
Confidence 66777877 678888888776 999999999876555444433322111111111100 00011
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceee---eeecCCC--
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN---IVDMKPS-- 261 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~---~~~~~~~-- 261 (457)
-+....+.+.++|..... .....+..-|..+|.++.+++-+..+++. ..|.|.-|..+..-+..+ .+.++..
T Consensus 116 Vs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred eecccCCCcEEECCcCCc--CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence 111223345555544322 22222335689999999999999999999 899999999872111110 1111111
Q ss_pred --cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc---------------cccee
Q 012721 262 --NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS---------------KSFFT 324 (457)
Q Consensus 262 --~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 324 (457)
.+........++.|+|++ ..+.+-+.|..|++++.+++++....-......+..+.. ...+.
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 123345678899999999 999999999999999999987542111111000000000 01123
Q ss_pred cccc-ceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccC--------------CCCccccce
Q 012721 325 EIIA-SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN--------------NDSIFDKFE 389 (457)
Q Consensus 325 ~h~~-~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~ 389 (457)
.|.. .-+.+.|...|++|+-++-=.|++.++.+ +..++.+...+...-..-.+|+ .+. -.
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~n----p~ 347 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNN----PL 347 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccC----cc
Confidence 3433 34577899999999998876688888875 5555444322211100001111 011 12
Q ss_pred EEEcCCCcEEEEEeCCCcEEEE
Q 012721 390 CSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 390 ~~~s~d~~~l~s~~~dg~i~iw 411 (457)
+.+-+|..+++++-..++++++
T Consensus 348 ~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 348 LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred cccCCCCeEEEeeeecceEEEE
Confidence 3466777788888888888888
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=3.1e-06 Score=76.18 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=125.8
Q ss_pred cCCCCEEEEeeC----------CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 124 APNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 124 s~~~~~l~s~s~----------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+++++.|+.+.. +..|.+||..+.+....+.....++
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~--------------------------------- 100 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR--------------------------------- 100 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch---------------------------------
Confidence 789888877654 7899999999998876655432210
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
......-..++++|||++++.. . +..|.+.|+. .++.+..+.++ +..
T Consensus 101 ---------------------~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~vp--------~~~ 150 (352)
T TIGR02658 101 ---------------------FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDVP--------DCY 150 (352)
T ss_pred ---------------------hhccCccceEEECCCCCEEEEecCCCCCEEEEEECC-CCcEEEEEeCC--------CCc
Confidence 0012234468899999999976 4 7999999999 56666554321 111
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCe-eeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecC
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYM 348 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~ 348 (457)
.-...+++. .+ .-+.||......+.... .......++.. .+.+. . ..+ .|.+ +|+++.....|
T Consensus 151 ~vy~t~e~~-~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~-~~~~v-----~--~rP----~~~~~dg~~~~vs~eG 215 (352)
T TIGR02658 151 HIFPTANDT-FF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHP-EDEYL-----I--NHP----AYSNKSGRLVWPTYTG 215 (352)
T ss_pred EEEEecCCc-cE--EEeecCceEEEEecCCCceEEeeeeeecC-Ccccc-----c--cCC----ceEcCCCcEEEEecCC
Confidence 111121211 11 12234433332222211 00000111111 00000 0 112 4455 88888877669
Q ss_pred cEEEEeccCC----CCceeEeeecc---ccccccccccCCCCccccceEEEcCCCcEEEEEeC----------CCcEEEE
Q 012721 349 NLKLWDIRMD----STPVATFKIHE---HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIF 411 (457)
Q Consensus 349 ~i~~wd~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----------dg~i~iw 411 (457)
.|.+.|+... .+....+.... ++.+ ..+ .-++++|+++.++.... .+.|.++
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP--------~g~---q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP--------GGW---QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCC--------Ccc---eeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 9999996431 12222221111 1111 011 24899999998887432 2479999
Q ss_pred ecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721 412 SHGVGSAGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
|..++ +....+.. ...+..++++||+.
T Consensus 285 D~~t~-kvi~~i~v-G~~~~~iavS~Dgk 311 (352)
T TIGR02658 285 DAKTG-KRLRKIEL-GHEIDSINVSQDAK 311 (352)
T ss_pred ECCCC-eEEEEEeC-CCceeeEEECCCCC
Confidence 99999 44454443 45889999999988
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=4.3e-09 Score=107.39 Aligned_cols=187 Identities=17% Similarity=0.212 Sum_probs=138.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.++.= .|...+.++|+.||.|++|....+..+...
T Consensus 2209 ~~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~---------------------------------------- 2246 (2439)
T KOG1064|consen 2209 ENVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVVCF---------------------------------------- 2246 (2439)
T ss_pred CceeeecC--CCCCceEEecCCCceEEEEeccCCCeEEEe----------------------------------------
Confidence 34555554 466678999999999999998776544322
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
+. .+. ..|+.+.|+.+|+.+..+ .||.+.+|... .+... ..+.|.....+
T Consensus 2247 ------rt-------------~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~-------s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2247 ------RT-------------AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYT-------SWQCHNKALSD 2297 (2439)
T ss_pred ------ec-------------cCc-chhhhhhhcccCCceeeeccCCceeecccC--Cccee-------ccccCCccccc
Confidence 11 233 688899999999999999 99999999987 33332 25678888888
Q ss_pred EEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721 273 AEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (457)
Q Consensus 273 v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~ 348 (457)
+.|-. ..+++++ .++.+.+||...... . .-.-..|.+.++++++-|..++|++|+. |
T Consensus 2298 f~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------~----------s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2298 FRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------N----------SLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred eeeee---hhhhccccCCCCCcccchhcccCcc------c----------ceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 88876 3466654 578899999654210 0 0011568899999999999999999986 9
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.|++||++. .++.+.++. +. ...++++|+..|.|+||++..-
T Consensus 2359 ~v~l~D~rq-rql~h~~~~------------------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQ-RQLRHTFQA------------------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHH-HHHHHHhhh------------------------hh-hhheeeccCcccceEEEEcccc
Confidence 999999985 555544432 22 4568999999999999999865
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=8.6e-08 Score=90.46 Aligned_cols=221 Identities=11% Similarity=0.133 Sum_probs=129.0
Q ss_pred cCCceEEEEECCCC------------CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec
Q 012721 31 DVDIVSAIEFDKTG------------DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (457)
Q Consensus 31 h~~~V~~~~~s~~~------------~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
|...|+.+.|.|-. -+||+++..|.|.|||...+.. +..++
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------------------~~~l~ 106 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------------------INWLS 106 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------------------hhhhc
Confidence 78999999998731 2678889999999999887653 23456
Q ss_pred cCCccccccccccccCcEEEEEEEecCCC--CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccccc
Q 012721 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (457)
Q Consensus 99 ~h~~~~~~~~~~~~~~~V~~v~~~~s~~~--~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (457)
.|. ++|..++|.+..+. ..|++-....++.+|+..+|+......+.. ....++.+.+-+.+.++.
T Consensus 107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEE
Confidence 666 88999999886554 356666777889999999987654433322 123446666666555444
Q ss_pred CCCCCceeccC--CccccccceEEEeccCcccc---cccee-eccCCCC---------CeeEEEeCCCCCEEEEe-CCCe
Q 012721 177 HNPPSFAHGYH--LEWTENMATKIANVGNSVHA---RCQKV-YPHAHDF---------NINSISNNSDCETFVSA-DDLR 240 (457)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~---~~~~~-~~~~h~~---------~v~~~~~~~~~~~l~~~-~d~~ 240 (457)
.+....-++.. +.-.++...+...+...... ....+ ....++. ....++|+|.-+.++.. ....
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 33222111111 11112222233322221000 00000 0000000 01235668865555444 8899
Q ss_pred EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc-cEEEEEccCCeEEEEEccC
Q 012721 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 241 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~lwd~~~ 299 (457)
+.++|++ -..++.++.++ .+.+.-+.+-|++. ..|.+.-.||.+.+|-.+.
T Consensus 254 llv~dle-~~~~l~vvpie-------r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLE-YECCLAVVPIE-------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcch-hhceeEEEEec-------cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 9999999 56666654322 23344556666652 4678888999999997654
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=2.1e-06 Score=87.98 Aligned_cols=231 Identities=10% Similarity=0.073 Sum_probs=145.3
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEE----EecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLW----KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.++.|+ ++...++.+..+|.|.+. +........+
T Consensus 76 ~~ivs~~yl--~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V------------------------------------- 116 (928)
T PF04762_consen 76 DKIVSFQYL--ADSESLCIALASGDIILVREDPDPDEDEIEIV------------------------------------- 116 (928)
T ss_pred CcEEEEEec--cCCCcEEEEECCceEEEEEccCCCCCceeEEE-------------------------------------
Confidence 679999995 677788888999999888 4433332221
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec----------
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM---------- 258 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~---------- 258 (457)
..-...|.+++||||++.|+.. .++.|.+.+..- ..+....+
T Consensus 117 -------------------------G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f--d~i~E~~l~~~~~~~~~~ 169 (928)
T PF04762_consen 117 -------------------------GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF--DPISEVPLDSDDFGESKH 169 (928)
T ss_pred -------------------------EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc--eEEEEeecCccccCCCce
Confidence 1234579999999999999998 888887765431 11100000
Q ss_pred -------CCC-------------------------cccCCCCceEEEEEecCCccEEEEEcc---C---CeEEEEEccCC
Q 012721 259 -------KPS-------------------------NMDDLTEVITSAEFHPIYCNLLAYSSS---R---GFVRLVDMRQS 300 (457)
Q Consensus 259 -------~~~-------------------------~~~~~~~~i~~v~~~p~~~~~l~~~~~---d---g~i~lwd~~~~ 300 (457)
|.. .+. ....-..|+|..|| .++|+.+. . ..++||+-. |
T Consensus 170 VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G 246 (928)
T PF04762_consen 170 VSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-G 246 (928)
T ss_pred eeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-c
Confidence 000 011 33355789999999 99998874 3 579999865 4
Q ss_pred eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c-CcEEEEeccCCCCceeEeeeccccccccc
Q 012721 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (457)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 376 (457)
.+.. +-+. -.+--.+++|.|.|.+||+.. + ..|.+|.-+ |-.-..|......
T Consensus 247 ~L~s----tSE~-------------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~~~----- 302 (928)
T PF04762_consen 247 ELQS----TSEP-------------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLRFDP----- 302 (928)
T ss_pred eEEe----cccc-------------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecCCCC-----
Confidence 4331 1110 012235789999999999864 2 567777653 4333333332100
Q ss_pred cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC-ceeeEEecC-CCcceeeeeccCCcceec
Q 012721 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAG-KNENRKPILQAAPRARRS 444 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~-~~~v~~~~~~p~~~~~~~ 444 (457)
.-..|..+.|++|+..||..-.|. |.+|-..+-. ...+.+... ...+..+.|+|..|..+.
T Consensus 303 ------~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 303 ------EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred ------CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 001226899999999999988665 9999988762 122333322 334556999999877654
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.95 E-value=1.7e-06 Score=72.76 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=31.2
Q ss_pred ceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
..+..||||..||+...+|.|.+|++.+- ........
T Consensus 233 ~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~~ 269 (282)
T PF15492_consen 233 FKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWKQ 269 (282)
T ss_pred EEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccch
Confidence 68999999999999999999999999987 44444433
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=2.1e-08 Score=82.37 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=69.6
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
-+..+.|+.+......+.+ . ....|.+++-+|..+.+ ++| .||.+-+||.+...... ..+..|...+
T Consensus 158 ~d~~~a~~~~p~~t~~~~~---~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i 226 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSK---K-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEI 226 (319)
T ss_pred ccceeeecccccccccccc---c-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhh
Confidence 3356667665443322222 1 12348999999966555 456 99999999999432222 2378899999
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
..+-|+|..+..|+++++||.+.-||..+
T Consensus 227 ~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999998889999999999999999875
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1e-08 Score=92.92 Aligned_cols=284 Identities=13% Similarity=0.112 Sum_probs=168.1
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|+..|+.++--.+.+-+++++.|++|++|.+...... + ....+-.+++.|.
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-----------~tsaCQfTY~aHk------ 784 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-----------GTSACQFTYQAHK------ 784 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-----------ccceeeeEhhhcc------
Confidence 4568999999887777888999999999999998754320 0 1223455678888
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
.+|+++.|+ .+..++ ++.|+.|.+||.--++..........
T Consensus 785 ------k~i~~igfL--~~lr~i--~ScD~giHlWDPFigr~Laq~~dapk----------------------------- 825 (1034)
T KOG4190|consen 785 ------KPIHDIGFL--ADLRSI--ASCDGGIHLWDPFIGRLLAQMEDAPK----------------------------- 825 (1034)
T ss_pred ------Ccccceeee--ecccee--eeccCcceeecccccchhHhhhcCcc-----------------------------
Confidence 899999996 454454 45688999999766654432110000
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
.+..+.|.|+.-- +...+.+ | ...+|+++|.+ ...-...+.+- +-.+
T Consensus 826 ---------------------------~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaR-sce~~~E~kVc--na~~ 874 (1034)
T KOG4190|consen 826 ---------------------------EGAGGNIKCLENV-DRHILIAGCSAESTVKLFDAR-SCEWTCELKVC--NAPG 874 (1034)
T ss_pred ---------------------------cCCCceeEecccC-cchheeeeccchhhheeeecc-cccceeeEEec--cCCC
Confidence 1222334443321 3334444 4 78999999998 44333333221 1244
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS- 344 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s- 344 (457)
....+.+++..+.| +.++.+-.+|.|.+.|.++++.+ ..|.. .......++ .|..+.|+.
T Consensus 875 Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI----Nswrp-------------mecdllqla-apsdq~L~~s 935 (1034)
T KOG4190|consen 875 PNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI----NSWRP-------------MECDLLQLA-APSDQALAQS 935 (1034)
T ss_pred CchheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee----ccCCc-------------ccchhhhhc-CchhHHHHhh
Confidence 55778999999999 99999999999999999998654 22221 011222222 355566664
Q ss_pred EecCcEEE-EeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEEEeCCCcEEEEecCCCC---ce
Q 012721 345 RDYMNLKL-WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGS---AG 419 (457)
Q Consensus 345 ~~~~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~dg~i~iw~~~~~~---~~ 419 (457)
+.+.++.+ |..-. +....+.+....+ ..|- .-|..|+++.....+.+|.-.... ..
T Consensus 936 aldHslaVnWhald-gimh~q~kpppep------------------ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~st 996 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALD-GIMHLQDKPPPEP------------------AHFLQSVGPSLVTAQNGNILGVYADSAELHAEST 996 (1034)
T ss_pred cccceeEeeehhcC-CeeeeccCCCCcc------------------hhhhhccCceeEEeccCcEEEEEecchhhhhhhh
Confidence 45677777 76642 4333333322221 1111 124556666666667777422110 11
Q ss_pred eeEE--ecCCCcceeeeeccCCcceecc
Q 012721 420 GITV--EAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 420 ~~~~--~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
+.++ ....+..++++.-|-+.+.+.|
T Consensus 997 itKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen 997 ITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred hccccccccCCccceeeeccccchhhcc
Confidence 1122 2334566777777777666653
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=6.7e-09 Score=94.00 Aligned_cols=221 Identities=22% Similarity=0.265 Sum_probs=140.8
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
.+..+.||+ .+|..++-. .+.+.|++++.|++|++|.++...-..
T Consensus 727 rL~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~--------------------- 771 (1034)
T KOG4190|consen 727 RLCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEI--------------------- 771 (1034)
T ss_pred eeecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCcc---------------------
Confidence 345677787 678777663 455689999999999999987531100
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcce
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 252 (457)
.+..|.-++ +.|..+|.++.|-.+-++++++ |+.|.+||.- .+..
T Consensus 772 --------------------------------~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPF-igr~ 816 (1034)
T KOG4190|consen 772 --------------------------------GTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPF-IGRL 816 (1034)
T ss_pred --------------------------------ccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeeccc-ccch
Confidence 011233334 7899999999998777766554 7889999987 3333
Q ss_pred ee-eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 253 FN-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 253 ~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
+. ..+.+ .++....|.|+.- -+..-+++.++...+|+++|.+..+.. ..++. .. ..+.+.-+.
T Consensus 817 Laq~~dap---k~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cn-------a~~Pna~~R 880 (1034)
T KOG4190|consen 817 LAQMEDAP---KEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWT----CELKV-CN-------APGPNALTR 880 (1034)
T ss_pred hHhhhcCc---ccCCCceeEeccc-Ccchheeeeccchhhheeeecccccce----eeEEe-cc-------CCCCchhee
Confidence 32 22111 2233344555432 123134444578899999999987543 22221 00 122245688
Q ss_pred EEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721 332 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 332 ~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i 410 (457)
+++..+.|+.++++ +.|.|.+.|.++ ++.+..++.-+-.. ..++ .|..+.|+....|.++.+
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeEe
Confidence 99999999999988 459999999986 77776665332110 1222 355667777777888888
Q ss_pred -EecCCC
Q 012721 411 -FSHGVG 416 (457)
Q Consensus 411 -w~~~~~ 416 (457)
|-...+
T Consensus 944 nWhaldg 950 (1034)
T KOG4190|consen 944 NWHALDG 950 (1034)
T ss_pred eehhcCC
Confidence 876665
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=8.4e-06 Score=71.34 Aligned_cols=227 Identities=14% Similarity=0.138 Sum_probs=137.6
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (457)
Q Consensus 37 ~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (457)
++.|.+ ++.++++--..+.|.-|+..++... .+.. ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----------------------------~~~~--------------~~ 41 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----------------------------VIDL--------------PG 41 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------EEES--------------SS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----------------------------EEec--------------CC
Confidence 578888 7777777778899999998776531 1111 22
Q ss_pred EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (457)
...+.+. .+++ .|+.+..++ +.++|..+++..........
T Consensus 42 ~~G~~~~-~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~------------------------------------- 81 (246)
T PF08450_consen 42 PNGMAFD-RPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDG------------------------------------- 81 (246)
T ss_dssp EEEEEEE-CTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETT-------------------------------------
T ss_pred CceEEEE-ccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCC-------------------------------------
Confidence 5667773 2454 566666655 45669888876655432100
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC--------CeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.......+.+++.|+|++.++. .. +.|..++.. ++.... ...
T Consensus 82 -------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~ 132 (246)
T PF08450_consen 82 -------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADG 132 (246)
T ss_dssp -------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEE
T ss_pred -------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecC
Confidence 1133467899999999988774 32 456666665 333222 112
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
-.....|+|+|++..++++-+..+.|..|++..........+.+.. +....+..-.+++..+|++.++.-
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEEc
Confidence 3557899999999334456678899999998753221111122211 011113477899999998777754
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEE
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFAT 401 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s 401 (457)
. +.|.++|.+ ++.+..+....... ++++|. ++.+.|+.
T Consensus 203 ~~~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 203 GGGRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYV 242 (246)
T ss_dssp TTTEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEE
T ss_pred CCCEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEE
Confidence 4 999999985 78888777663322 689994 66555543
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=3.8e-08 Score=80.90 Aligned_cols=184 Identities=13% Similarity=0.085 Sum_probs=108.1
Q ss_pred CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-----cCCeEEEEEccCCee
Q 012721 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSAL 302 (457)
Q Consensus 229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-----~dg~i~lwd~~~~~~ 302 (457)
-++.++++ .||.+.+++.+...+....+ -..|.+ -.+.+....+ +++.++. .-+..+.|+++..+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i------~~~~~~-~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t 171 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRI------PSIHSG-SASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKT 171 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhc------cccccc-ccccceeecc-cEEecCCcceEeeccceeeeccccccc
Confidence 46678888 99999999987311111100 011111 1223333444 4444432 122344555554321
Q ss_pred eccccccccccccccCcccceeccccceEEEEEccCCCeEE-EEec-CcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 380 (457)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (457)
. +.. ..-...|++++-+|..+.++ +|++ |.+-+||.+....+...+..|+..+
T Consensus 172 ~------~~~-----------~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i-------- 226 (319)
T KOG4714|consen 172 L------IPS-----------KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI-------- 226 (319)
T ss_pred c------ccc-----------ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh--------
Confidence 1 111 00013489999999876665 5665 9999999986555666778888776
Q ss_pred CCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceee-------EEecCCCccee-eeeccCCcceeccccccc-
Q 012721 381 NDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGI-------TVEAGKNENRK-PILQAAPRARRSSLSNLT- 450 (457)
Q Consensus 381 ~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~v~~-~~~~p~~~~~~~~~~~~~- 450 (457)
..+.|+| ++..|+++++||.+..||..+. .... ..--...++++ +...|-.|...-++.+++
T Consensus 227 -------~eV~FHpk~p~~Lft~sedGslw~wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV 298 (319)
T KOG4714|consen 227 -------WEVHFHPKNPEHLFTCSEDGSLWHWDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV 298 (319)
T ss_pred -------hheeccCCCchheeEecCCCcEEEEcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeeeeeec
Confidence 5899998 4789999999999999998743 1111 11112345555 555555666666666655
Q ss_pred ccc
Q 012721 451 RGL 453 (457)
Q Consensus 451 ~~~ 453 (457)
+|+
T Consensus 299 ~g~ 301 (319)
T KOG4714|consen 299 LGP 301 (319)
T ss_pred cCc
Confidence 444
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.84 E-value=2.8e-07 Score=76.29 Aligned_cols=176 Identities=13% Similarity=-0.014 Sum_probs=115.0
Q ss_pred CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc
Q 012721 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (457)
Q Consensus 229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 307 (457)
...+|+.| .-|...+|...+.....++. ..|...|+-+.=.-+....+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---- 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---- 151 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----
Confidence 45678888 99999999998444333332 2222222221111111134666788888888887765321
Q ss_pred ccccccccccCcccceecccc--ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCc
Q 012721 308 RILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384 (457)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (457)
.. -|.. .+.++.++++++++++.+| ..|..|.+...++-+......... |.-
T Consensus 152 ~~---------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~g 206 (344)
T KOG4532|consen 152 FA---------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DHG 206 (344)
T ss_pred ce---------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CCc
Confidence 11 1112 2788999999999998777 999999997544443332222111 111
Q ss_pred cccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceee----EEecCCCcceeeeeccCCccee
Q 012721 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----TVEAGKNENRKPILQAAPRARR 443 (457)
Q Consensus 385 ~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~~ 443 (457)
++..|+.....+|++..||++.|||++....+.. +-..|.+.++.+.|+|-|+.-+
T Consensus 207 ---F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL 266 (344)
T KOG4532|consen 207 ---FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL 266 (344)
T ss_pred ---eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE
Confidence 5789999999999999999999999987644322 2346889999999998776543
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=6.4e-06 Score=86.07 Aligned_cols=132 Identities=9% Similarity=0.105 Sum_probs=80.9
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCC------Cccc--------CCCCceEEEEEecCCccEE
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP------SNMD--------DLTEVITSAEFHPIYCNLL 283 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~------~~~~--------~~~~~i~~v~~~p~~~~~l 283 (457)
....++++|+++.|+++ .++.|++||++..+... .....+ ..+. ..-.....++++++| .++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LY 818 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIY 818 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEE
Confidence 45679999999866555 78999999998433211 110000 0000 011234688999999 888
Q ss_pred EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccC
Q 012721 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 357 (457)
Q Consensus 284 ~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~ 357 (457)
++-..++.|++||..++.... +...-......-....+.-.....++++++|+++++-+. +.|++||+++
T Consensus 819 VADs~N~rIrviD~~tg~v~t----iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 819 VADSYNHKIKKLDPATKRVTT----LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EEECCCCEEEEEECCCCeEEE----EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 888899999999998765431 110000000000001222235678999999997777654 9999999975
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=1.4e-07 Score=82.44 Aligned_cols=160 Identities=11% Similarity=0.119 Sum_probs=99.2
Q ss_pred eEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe---EEEEEc
Q 012721 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF---VRLVDM 297 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~---i~lwd~ 297 (457)
..+..++.++++|.+ .+....++++....+..+.++.. .-....+++.|..+. .....+..-|. +.+|..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-----~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-----CVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-----ecccCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence 345567888999998 88887788777433322221110 011223444444444 33444433333 334433
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeE-eeecccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT-FKIHEHLRPKL 375 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~-~~~~~~~~~~~ 375 (457)
..+. ...+.||-+.++.++|+||+++|++++ |..|++-.... .-.+.. .-||...+.
T Consensus 140 ~~~~------------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS-- 198 (390)
T KOG3914|consen 140 DSGR------------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVS-- 198 (390)
T ss_pred cccC------------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhee--
Confidence 3221 112357788999999999999999998 49999887753 233333 346887763
Q ss_pred ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 423 (457)
.++.- ++..|++|+.|++|++||+.+|+ .+.++
T Consensus 199 -------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk-~L~t~ 231 (390)
T KOG3914|consen 199 -------------TISLT-DNYLLLSGSGDKTLRLWDITSGK-LLDTC 231 (390)
T ss_pred -------------eeeec-cCceeeecCCCCcEEEEecccCC-ccccc
Confidence 56665 44568999999999999999994 44443
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=2e-07 Score=87.36 Aligned_cols=246 Identities=10% Similarity=0.096 Sum_probs=151.9
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
....+++| +.+..++++|+.||.+++..+.+...-.... | +...
T Consensus 15 vkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~----------------g--laa~---------------- 58 (1189)
T KOG2041|consen 15 VKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKS----------------G--LAAA---------------- 58 (1189)
T ss_pred ceEEEEEE--cccCCeEEeccccceeEEEEccccCCccccc----------------c--cccc----------------
Confidence 67899999 6777799999999999999877642211000 0 0000
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
.+...-++ +.+|...|.-+.|+.+.+.|.++ .+|.|.+|-+-...-+...+ -....+.|.+
T Consensus 59 -----------snLsmNQt-LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~S 120 (1189)
T KOG2041|consen 59 -----------SNLSMNQT-LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVS 120 (1189)
T ss_pred -----------cccchhhh-hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEE
Confidence 00011122 37999999999999999999999 99999999987332221111 1234577999
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~ 351 (457)
++|+.+| ..|+....||.|.+=.+.......+ -+++ .-...+.|++|.+.++.+-. |.+.
T Consensus 121 msWn~dG-~kIcIvYeDGavIVGsvdGNRIwgK---eLkg---------------~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 121 MSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGK---ELKG---------------QLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred EEEcCCC-cEEEEEEccCCEEEEeeccceecch---hcch---------------heccceeecccHHHHHhhhcCCcEE
Confidence 9999999 8999999999988776665532211 1111 23557899999888777654 9999
Q ss_pred EEeccCCC--Cc--eeEeeeccccccccccccCCCCccccceEEE--------cCCCcEEEEEeCCCcEEEEecCCCCce
Q 012721 352 LWDIRMDS--TP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSV--------SGDGLHFATGSYSNLLRIFSHGVGSAG 419 (457)
Q Consensus 352 ~wd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~d~~~l~s~~~dg~i~iw~~~~~~~~ 419 (457)
+||..-.. +. -....+.....+ +. .. +-.+.| -||...|+.+-..|.+.|-.-.+...+
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~-----~~-~k---ia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSN-----FP-TK---IAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecC-----CC-cc---ccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 99975210 00 011111100000 00 00 023344 257888998888999888776655333
Q ss_pred eeEEecCCCcceeeeeccCCccee
Q 012721 420 GITVEAGKNENRKPILQAAPRARR 443 (457)
Q Consensus 420 ~~~~~~~~~~v~~~~~~p~~~~~~ 443 (457)
...-.+ -.+....|+|+|.-.+
T Consensus 253 vv~dtg--m~~vgakWnh~G~vLA 274 (1189)
T KOG2041|consen 253 VVVDTG--MKIVGAKWNHNGAVLA 274 (1189)
T ss_pred eEEecc--cEeecceecCCCcEEE
Confidence 333222 4556666777665443
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=6e-08 Score=90.97 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=125.2
Q ss_pred eEEEeCC--CCCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 222 NSISNNS--DCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 222 ~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
-...|+| ...+-+.. ....-.+|++... .+.+..+ +.+|...|+.+.|+|..+..+++++.|-.++.||+
T Consensus 71 ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred cceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE------EecCccceeccccCCCCCcceeeccccccceeeec
Confidence 3455554 23334444 6666778887632 2334433 67899999999999999889999999999999999
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 376 (457)
++.... ...+.. -....+.++|+. ++..+|+...+.|++||.+.++.++..+++|...+
T Consensus 145 rSp~~p---~ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v---- 204 (1081)
T KOG0309|consen 145 RSPHRP---FYSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV---- 204 (1081)
T ss_pred cCCCcc---eeeeec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee----
Confidence 985321 111111 124567889986 45555555558999999998889999999876654
Q ss_pred cccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721 377 DLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 441 (457)
..++|.. -...+.+.+.||+|+.||.....+...-...-..|+..-.+-|-+-.
T Consensus 205 -----------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 205 -----------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred -----------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCce
Confidence 3556643 23457788999999999987653333334445667777777766543
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=4.7e-05 Score=66.59 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=105.7
Q ss_pred eeEEEeC-CCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEecCCccEEEEEccC--------C
Q 012721 221 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G 290 (457)
Q Consensus 221 v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~d--------g 290 (457)
...+++. +++ .|+.+..+.+.++|.. .++...+.... ... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5566776 565 4555533444555887 44444333211 012 34668899999999 777665533 5
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCcee---Ee
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA---TF 365 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~---~~ 365 (457)
.|..++.. ++.. ..... -...+.++|+|+++.|+.++ . +.|..+++...+..+. .+
T Consensus 116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 57777766 3321 11111 24568999999999887654 3 8899999864333222 12
Q ss_pred eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 436 (457)
......... .-.+++..+|++.++.-..+.|.+++.+ | +....+..-...+++++|.
T Consensus 177 ~~~~~~~g~------------pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 177 IDFPGGPGY------------PDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EE-SSSSCE------------EEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEE
T ss_pred EEcCCCCcC------------CCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEE
Confidence 111111000 0368999999988888888999999987 6 5566565555588889995
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=3.8e-06 Score=79.78 Aligned_cols=258 Identities=15% Similarity=0.171 Sum_probs=159.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...-.++.|+|.| +||-|+. ..|.+-|..+.+ .+..+.-|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q---------------------------~iqsie~h~---------- 55 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQ---------------------------LIQSIELHQ---------- 55 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhh---------------------------hhhccccCc----------
Confidence 3346788999877 7777775 468888876544 455677777
Q ss_pred ccCcEEEEEEEecCC----------CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721 112 IEEKINRVRWCAAPN----------GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~----------~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
..|+.|.|.|.+. .-+|+++...|.|.+||...+....-
T Consensus 56 --s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~----------------------------- 104 (1062)
T KOG1912|consen 56 --SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW----------------------------- 104 (1062)
T ss_pred --cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-----------------------------
Confidence 7899999976321 12466677889999999877643211
Q ss_pred ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCE-EEEe-CCCeEEEEEcCCCcceeeee
Q 012721 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCET-FVSA-DDLRINLWNLEISDQCFNIV 256 (457)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (457)
+..|..++..++|-+ +.+. |++- ....|.+|+..++++..+
T Consensus 105 --------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-- 150 (1062)
T KOG1912|consen 105 --------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-- 150 (1062)
T ss_pred --------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--
Confidence 146677888888854 4433 4443 789999999985544443
Q ss_pred ecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccc---ccccccCcc-cceec--c---c
Q 012721 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHGSK-SFFTE--I---I 327 (457)
Q Consensus 257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~--h---~ 327 (457)
.........|+.+.|-.++.+..-+..|.+.+-+.-..+......+.+. .|.+.+..+ .+..+ + .
T Consensus 151 ------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 151 ------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred ------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 2233355677899997767777777778777766543322221112221 111100000 00000 0 0
Q ss_pred c------ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC--cE
Q 012721 328 A------SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LH 398 (457)
Q Consensus 328 ~------~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~ 398 (457)
. ....++|+|.-+.++-... ..+.++|++. ..++.......+.. --+.|-|++ ..
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDA 288 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcce
Confidence 0 1123566776655554444 8899999986 67777766555533 136676664 57
Q ss_pred EEEEeCCCcEEEEecCC
Q 012721 399 FATGSYSNLLRIFSHGV 415 (457)
Q Consensus 399 l~s~~~dg~i~iw~~~~ 415 (457)
|++.-.||.+.+|--+.
T Consensus 289 LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEecCCeEEEEEeec
Confidence 88999999999998665
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.8e-08 Score=96.26 Aligned_cols=199 Identities=15% Similarity=0.220 Sum_probs=130.8
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|... ....+|.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~-------- 1143 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ-------- 1143 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc--------
Confidence 37889999999999999999999999999999988742 3456777
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
.+|+.+.= +.+|..+++.+. .-...+|++..- .
T Consensus 1144 ----SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~-~-------------------------------------- 1178 (1516)
T KOG1832|consen 1144 ----SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST-G-------------------------------------- 1178 (1516)
T ss_pred ----cccccccc--cCCcceeeeeccccCchHHHhccccc-c--------------------------------------
Confidence 78888876 778888777542 235678987541 0
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+.. .-..-.++.|+.....-+.| ......+||+.+...+...+.. ..+.
T Consensus 1179 --------------------~~~H-----sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~----~~~~ 1229 (1516)
T KOG1832|consen 1179 --------------------GPRH-----SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD----TVTS 1229 (1516)
T ss_pred --------------------Cccc-----cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc----chhh
Confidence 0000 11234567787554444445 5678899999955544432210 1122
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
+..-.+..|+|+. .+++ .|| .+||++..+.+ ..|+.. + .--.-.|+|.|.-++..+
T Consensus 1230 ~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~f-------------t-~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQF-------------T-DYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred hhhccccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhh-------------e-ecccccccCCCceEEeec
Confidence 2333778899997 6665 466 58999986433 333330 1 112346899998888776
Q ss_pred cCcEEEEeccCCCCceeEee
Q 012721 347 YMNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~ 366 (457)
. |||+++ .+.++...
T Consensus 1286 E----IwD~RT-F~lLh~VP 1300 (1516)
T KOG1832|consen 1286 E----IWDMRT-FKLLHSVP 1300 (1516)
T ss_pred h----hhhhHH-HHHHhcCc
Confidence 4 899987 55555443
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=6.8e-06 Score=69.25 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~ 302 (457)
....|..|+.+||| .+||+...+|.|.+|++.+-++
T Consensus 228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 35679999999999 9999999999999999987543
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=9.1e-06 Score=70.63 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=75.8
Q ss_pred CCCCCeeEEEeCCCCCEEEEe-CCCe-------EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE-EEE
Q 012721 216 AHDFNINSISNNSDCETFVSA-DDLR-------INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYS 286 (457)
Q Consensus 216 ~h~~~v~~~~~~~~~~~l~~~-~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~ 286 (457)
.|...|..+++.++|..++.. +.+. |-+++. +.....+.+...........+-+|++++++ .++ +++
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence 467789999999999888776 4432 444443 333444444433445566889999999998 655 555
Q ss_pred ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEe
Q 012721 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (457)
Q Consensus 287 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd 354 (457)
-..+.+.+||..+++.. ..... ..+..++-.+++ ++++...|.+...+
T Consensus 236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 57889999999998654 22222 346777777777 66666556544333
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.65 E-value=3e-08 Score=58.72 Aligned_cols=31 Identities=19% Similarity=0.551 Sum_probs=29.9
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~ 60 (457)
.|.+.|++|+|+|++.+||+|+.|+.|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4999999999999999999999999999997
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=5.1e-08 Score=93.32 Aligned_cols=191 Identities=13% Similarity=0.170 Sum_probs=133.1
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
++..-+|++| +.+.++|+.|+..|.|+++++.+|......
T Consensus 1100 ~~~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s~-------------------------------------- 1139 (1516)
T KOG1832|consen 1100 ETALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEESV-------------------------------------- 1139 (1516)
T ss_pred cccceeeEEe--ecCCceEEeeeccceEEEEEccCccccccc--------------------------------------
Confidence 3378899999 678889999999999999999988644321
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC-eEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
.+|...|+-+.-+.+|..+.+. ... ...+|++...+.....+ .
T Consensus 1140 -----------------------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----------~ 1185 (1516)
T KOG1832|consen 1140 -----------------------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF-----------D 1185 (1516)
T ss_pred -----------------------cccccccccccccCCcceeeeeccccCchHHHhccccccCccccc-----------c
Confidence 6899999999999999888775 333 67899988544443322 2
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecC
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~ 348 (457)
.-.++.|+... ..-+.|.......+||++++..+.. .+.. ... ....-+...|+|+..+++--+
T Consensus 1186 ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~~~---------~~y~~n~a~FsP~D~LIlndG-- 1249 (1516)
T KOG1832|consen 1186 EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-TVT---------SSYSNNLAHFSPCDTLILNDG-- 1249 (1516)
T ss_pred ccceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-chh---------hhhhccccccCCCcceEeeCc--
Confidence 34577887765 5555666667789999999865532 1222 000 112236788999988877433
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.+||.+. .+.++.|...... ..=.|+|.|..++.-++ |||+++-
T Consensus 1250 --vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1250 --VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred --eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhhhHHH
Confidence 5899986 4555555433221 24579999999988876 8999876
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.2e-07 Score=80.64 Aligned_cols=225 Identities=20% Similarity=0.181 Sum_probs=141.6
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
++.-|.+.|+.+.- .-.+++++++.||.++.|.-..-......
T Consensus 4 ksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfV---------------------------------- 46 (558)
T KOG0882|consen 4 KSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFV---------------------------------- 46 (558)
T ss_pred hhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeeh----------------------------------
Confidence 34445577777765 34569999999999999975442211111
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
+. +..|...|.+++.+.++.++.+. . |..++++|++ .-.....++ +.-
T Consensus 47 -----------------------Kh-FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE-n~DminmiK-----L~~ 96 (558)
T KOG0882|consen 47 -----------------------KH-FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE-NFDMINMIK-----LVD 96 (558)
T ss_pred -----------------------hh-hHHHHHHHHhhhccccceeEeeccCcccceeEEEee-ccchhhhcc-----ccc
Confidence 11 15688888999999999999996 5 9999999998 333332221 111
Q ss_pred CCCceEEEEEecCCc-cEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 266 LTEVITSAEFHPIYC-NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~-~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
..+.+..+ .++... ..|+++. .+|.+.++|-....+.. ..+. .-|..+|..+.+.+-+..++
T Consensus 97 lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 97 LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeecccccee
Confidence 12222211 122210 1444443 67999999977653221 1111 23668999999999999988
Q ss_pred EEec-CcEEEEeccCC-----CCceeEeeeccccccccccccCCCCcc-ccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 344 SRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIF-DKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+.+. |.|.-|..... .+....++... ++|...... ...++.|+|++..+.+-+.|..|+++.+++|
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-------dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHET-------DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccc-------hhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 8875 99999988621 11111222111 112211111 1268999999999999999999999999999
Q ss_pred CceeeEE
Q 012721 417 SAGGITV 423 (457)
Q Consensus 417 ~~~~~~~ 423 (457)
+..+.+
T Consensus 234 -klvqei 239 (558)
T KOG0882|consen 234 -KLVQEI 239 (558)
T ss_pred -hhhhhh
Confidence 444443
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.59 E-value=3.9e-05 Score=71.89 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=85.3
Q ss_pred CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC--Cc---e-EEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (457)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---i-~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~ 303 (457)
..++.+ .++.+..+|.+ .++..-..... ...+.. .. + .+..+ .+ ..+++++.+|.+..||..+++..
T Consensus 191 ~~v~~~~~~g~v~ald~~-tG~~~W~~~~~--~~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQ-TGQPLWEQRVA--LPKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred CEEEEECCCCEEEEEEcc-CCCEeeeeccc--cCCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEE
Confidence 356677 88999999987 34332211100 000000 00 0 11112 23 46777888999999999988633
Q ss_pred ccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCC
Q 012721 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 382 (457)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (457)
+.. .. .....+.. .+..++.++ +|.+..+|..+ ++.+-..........
T Consensus 265 ------W~~-~~------------~~~~~p~~--~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~--------- 313 (377)
T TIGR03300 265 ------WKR-DA------------SSYQGPAV--DDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQL--------- 313 (377)
T ss_pred ------Eee-cc------------CCccCceE--eCCEEEEECCCCeEEEEECCC-CcEEEccccccCCcc---------
Confidence 222 00 01111222 345555554 59999999975 665544321111100
Q ss_pred CccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (457)
Q Consensus 383 ~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 429 (457)
..... .+..|++++.+|.|+++|..+| +....++.+..+
T Consensus 314 -----ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~ 352 (377)
T TIGR03300 314 -----TAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVARLKTDGSG 352 (377)
T ss_pred -----ccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCc
Confidence 12222 4568889999999999999999 566666655543
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=0.00011 Score=64.11 Aligned_cols=239 Identities=15% Similarity=0.215 Sum_probs=136.9
Q ss_pred ceEEEEECC-CCCEEEEEeCCCe-EEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 34 IVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 34 ~V~~~~~s~-~~~~latg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
....++.+| .+..+|.+-.-|+ ..+||..+++..+. + ....-..|.||-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------~------------~a~~gRHFyGHg---------- 56 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------L------------WAPPGRHFYGHG---------- 56 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------E------------cCCCCCEEecCE----------
Confidence 445678888 5667777776665 67889888875300 0 001113455665
Q ss_pred ccCcEEEEEEEecCCCCEEEEee-----CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 112 IEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s-----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
.| +++|.+|++.- ..|.|-|||...+ ...+-++
T Consensus 57 --------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~------------------------------- 94 (305)
T PF07433_consen 57 --------VF--SPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEF------------------------------- 94 (305)
T ss_pred --------EE--cCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEe-------------------------------
Confidence 56 79999999863 4588999998832 2222221
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCC-------------------CeEEEEEcC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD-------------------LRINLWNLE 247 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d-------------------~~i~iwd~~ 247 (457)
..|.-.-..+.+.|||+.|+.++. -.+...|..
T Consensus 95 ----------------------------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 95 ----------------------------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ----------------------------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 223333445678888877776422 223344444
Q ss_pred CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-------eEEEEEccCCeeeccccccccccccccCcc
Q 012721 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSK 320 (457)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
.+..+..+.+. -..|...|..+++.++| ..++..-..| .|-+++.... . ..+.. ..
T Consensus 147 -sG~ll~q~~Lp---~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~ 209 (305)
T PF07433_consen 147 -SGALLEQVELP---PDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PE 209 (305)
T ss_pred -CCceeeeeecC---ccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------Ch
Confidence 34444332211 14477789999999998 5444332222 1333332221 0 11111 00
Q ss_pred cceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE
Q 012721 321 SFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 398 (457)
Q Consensus 321 ~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 398 (457)
.........+-+|++++++.++++.+ - +.+.+||..+ ++.+......+. ..++-.+++ +
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f 270 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-F 270 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-e
Confidence 01122346899999999999998766 3 9999999986 777766554432 245555555 6
Q ss_pred EEEEeCCCcE
Q 012721 399 FATGSYSNLL 408 (457)
Q Consensus 399 l~s~~~dg~i 408 (457)
+++.+. |.+
T Consensus 271 ~~ssG~-G~~ 279 (305)
T PF07433_consen 271 LVSSGQ-GQL 279 (305)
T ss_pred EEeCCC-ccE
Confidence 665554 544
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=5.7e-05 Score=65.74 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=80.3
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 308 (457)
+..++.+ .++.|+.+|..+.....+...... .... ..........+ ..++++..++.|..+|+++++..-.
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~--- 147 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS---PPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWK--- 147 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS---CTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEE---
T ss_pred ccccccccceeeeEecccCCcceeeeeccccc---cccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEE---
Confidence 3444444 788999999884444443221110 1111 11222222335 6788888899999999999975421
Q ss_pred cccccccccCcccceeccccceEEEEEccCCCeEEEEecCc-EEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (457)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (457)
... ..+.....+. ....+..-....++..+++..++. +.+ |+.+ ++.+-... ....
T Consensus 148 -~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~---------------- 204 (238)
T PF13360_consen 148 -YPV--GEPRGSSPIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI---------------- 204 (238)
T ss_dssp -EES--STT-SS--EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E----------------
T ss_pred -eec--CCCCCCccee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc----------------
Confidence 111 0000000000 011122222233454444444564 555 9876 55332222 1111
Q ss_pred ceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
......++..|+.++.++.|..||+.+|+
T Consensus 205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred -cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 12245677888888899999999999993
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=0.00011 Score=68.53 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=89.2
Q ss_pred eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCC
Q 012721 138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH 217 (457)
Q Consensus 138 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h 217 (457)
.+.++.+..++...........+..++.|+..++..+.+.. ..+...+. ..-...+|+.... ..+++.+.....
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE---~s~s~~g~--~~~d~ciYE~~r~-klqrvsvtsipL 258 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVE---QSISVKGE--PSADSCIYECSRN-KLQRVSVTSIPL 258 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEE---EecCCCCC--ceeEEEEEEeecC-ceeEEEEEEEec
Confidence 34455555544444433344444455555544443332221 01111111 1113344555432 233444443567
Q ss_pred CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
...|.|++++|+.+.++.| .||+|.+||.. .+... +....-.++.++|+|+| .++++|+..|.+.+||
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~t~---------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTT-RGVTL---------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFD 327 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcC-CCeee---------eeeecccceEEEEcCCC-cEEEEEcCCceEEEEE
Confidence 7889999999999999999 99999999987 33222 12233557899999999 9999999999999999
Q ss_pred ccCC
Q 012721 297 MRQS 300 (457)
Q Consensus 297 ~~~~ 300 (457)
+.-.
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 8764
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=3.7e-07 Score=53.93 Aligned_cols=38 Identities=29% Similarity=0.799 Sum_probs=34.4
Q ss_pred ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEE
Q 012721 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (457)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~ 143 (457)
+++.++++|. +.|++++| +|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence 3677899999 88999999 57899999999999999997
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=6.8e-05 Score=68.83 Aligned_cols=277 Identities=19% Similarity=0.193 Sum_probs=160.7
Q ss_pred EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (457)
=+-+.| ||-|.+|++--.-| |.+|--.+-..... -.++.|.-+.|++.+..++.-...+ .....+ -..+..
T Consensus 213 etyv~w--SP~GTYL~t~Hk~G-I~lWGG~~f~r~~R---F~Hp~Vq~idfSP~EkYLVT~s~~p-~~~~~~--d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRW--SPKGTYLVTFHKQG-IALWGGESFDRIQR---FYHPGVQFIDFSPNEKYLVTYSPEP-IIVEED--DNEGQQ 283 (698)
T ss_pred eeeEEe--cCCceEEEEEeccc-eeeecCccHHHHHh---ccCCCceeeecCCccceEEEecCCc-cccCcc--cCCCce
Confidence 356889 78999999988777 78997554322211 1233455666666655544322211 000000 122348
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 275 (457)
+.+||+.+-...+...++ .+....-.-+.||.|++++|--...+|.||+.. . ...++.++. .-..|...+|
T Consensus 284 l~IWDI~tG~lkrsF~~~-~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp-s---f~lld~Ksl----ki~gIr~Fsw 354 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVI-KSPYLKWPIFRWSHDDKYFARMTGNSISIYETP-S---FMLLDKKSL----KISGIRDFSW 354 (698)
T ss_pred EEEEEccccchhcceecc-CCCccccceEEeccCCceeEEeccceEEEEecC-c---eeeeccccc----CCccccCccc
Confidence 999999753322222221 122222235689999999887655889999876 2 333333321 2256788899
Q ss_pred ecCCccEEEEEccC-----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---
Q 012721 276 HPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--- 347 (457)
Q Consensus 276 ~p~~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--- 347 (457)
+|.+ ++||.-... ..+.+-.+.+++.+ +.... |+-.=..+.|-.+|.||+.--+
T Consensus 355 sP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nl-------------fnVsDckLhWQk~gdyLcvkvdR~t 416 (698)
T KOG2314|consen 355 SPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNL-------------FNVSDCKLHWQKSGDYLCVKVDRHT 416 (698)
T ss_pred CCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccc-------------eeeeccEEEeccCCcEEEEEEEeec
Confidence 9998 888865421 24555555554332 22111 1112235677788999985322
Q ss_pred --------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC---CCcEEEEecC-C
Q 012721 348 --------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHG-V 415 (457)
Q Consensus 348 --------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~iw~~~-~ 415 (457)
..+.|+.++....++..+...+.. ...+|-|.|..+++-+. ..++.+|.+. +
T Consensus 417 K~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 417 KSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred cccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccceeEEEeecC
Confidence 234566665333344444433332 58999999987765443 3579999988 4
Q ss_pred CCceeeEEecCCCcceeeeeccCCcceec
Q 012721 416 GSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
..+...+..-.....+.+.|+|.|+....
T Consensus 481 ~~~~~lVk~~dk~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 481 IKKPSLVKELDKKFANTVFWSPKGRFVVV 509 (698)
T ss_pred CCchhhhhhhcccccceEEEcCCCcEEEE
Confidence 43444444444577899999999988776
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=9.9e-06 Score=77.42 Aligned_cols=192 Identities=16% Similarity=0.191 Sum_probs=126.6
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
+...+.++|++++ ++.||-|.-+|.|++++...... +...|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-----------------------------~~~~~s------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-----------------------------TNFDHS------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-----------------------------cccccc-------
Confidence 4467899999999 88999999999999999765421 222333
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.. ..+|.++++|+.||.|.+-.+-+.+.....
T Consensus 78 -----~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~----------------------------------- 109 (846)
T KOG2066|consen 78 -----SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQY----------------------------------- 109 (846)
T ss_pred -----cc--------ccCCceEEEecCCCcEEEeeccCCccceeE-----------------------------------
Confidence 11 357999999999999999887776544332
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-----CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
....++.+++++|+ .+.+++| .-| +.++.-+--+....+ .
T Consensus 110 ---------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~ 155 (846)
T KOG2066|consen 110 ---------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------V 155 (846)
T ss_pred ---------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------e
Confidence 22347889999987 5677787 666 888765422222211 1
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
+....++|.++.|.- ++||-++.+| |++||+.+++.... .+. +. +..+ ....-..+.|.++.+ |
T Consensus 156 l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~----i~~-p~-~~~R-----~e~fpphl~W~~~~~-L 219 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTN----IPP-PS-QSVR-----PELFPPHLHWQDEDR-L 219 (846)
T ss_pred eecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeec----cCC-CC-CCCC-----cccCCCceEecCCCe-E
Confidence 455668999999974 6788888877 79999998764421 111 00 0000 011234577877654 4
Q ss_pred EEEecCcEEEEecc
Q 012721 343 LSRDYMNLKLWDIR 356 (457)
Q Consensus 343 ~s~~~~~i~~wd~~ 356 (457)
+.|-..+|++..++
T Consensus 220 VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 220 VIGWGDSVKICSIK 233 (846)
T ss_pred EEecCCeEEEEEEe
Confidence 44544577777776
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=9.1e-07 Score=75.91 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=90.1
Q ss_pred CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC----cceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccCC
Q 012721 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG 290 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg 290 (457)
....|.++.|...++++..| .+|.|..+|++.. +.+.. .--|...|+++..-. ++ ++|++.+.+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--------rlyh~Ssvtslq~Lq~s~-q~LmaS~M~g 321 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--------RLYHDSSVTSLQILQFSQ-QKLMASDMTG 321 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--------EEEcCcchhhhhhhcccc-ceEeeccCcC
Confidence 44578888898888899999 9999999999854 22222 223788899998776 55 8899999999
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceE--EEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeee
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS--DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~ 367 (457)
+|++||++.-+.. ..+..+++ |...-. -+...+....+++++ |...++|.++. +.++.++..
T Consensus 322 kikLyD~R~~K~~-~~V~qYeG-------------HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf 386 (425)
T KOG2695|consen 322 KIKLYDLRATKCK-KSVMQYEG-------------HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPF 386 (425)
T ss_pred ceeEeeehhhhcc-cceeeeec-------------ccccccccccccccccceEEEccCeeEEEEEeccc-CceeeccCC
Confidence 9999999976531 12234444 322211 223345566666654 59999999985 888877765
Q ss_pred ccc
Q 012721 368 HEH 370 (457)
Q Consensus 368 ~~~ 370 (457)
...
T Consensus 387 ~~s 389 (425)
T KOG2695|consen 387 PYS 389 (425)
T ss_pred CCc
Confidence 443
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=6.3e-05 Score=72.67 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=85.9
Q ss_pred CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l 294 (457)
...++.+++.+.+-+.+|+| .||.|..+.=+.. .+..+. .-.....++|+.+++..++ ..++.......|.+
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVML 197 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCC-ceeEEEEecceeEE
Confidence 45678899999999999999 9999999853311 111111 0122345889999999998 55444555667999
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEee-eccc
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEH 370 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~-~~~~ 370 (457)
|.+.... . ..++ +..|...+.|..+++...-++++....+.+|+... .++...+. ++..
T Consensus 198 y~l~gr~-p--~~~~-------------ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 198 YSLSGRT-P--SLKV-------------LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEKK 257 (933)
T ss_pred EEecCCC-c--ceee-------------eccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCeE
Confidence 9988432 0 0111 23456788999988765546665557899999863 45555555 4443
No 312
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.42 E-value=7.8e-05 Score=70.55 Aligned_cols=123 Identities=16% Similarity=0.231 Sum_probs=86.4
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|...|.=-+++..+++++.|+..|.+++|+-.+++.. +....+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~---------- 75 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGA---------- 75 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCc----------
Confidence 5666666777778999999999999999998877652 1112221
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+.++.-. +++..++|.|+..|.|.++-++.+......-...
T Consensus 76 ---~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~--------------------------------- 118 (726)
T KOG3621|consen 76 ---TGITCVRSV-SSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP--------------------------------- 118 (726)
T ss_pred ---cceEEEEEe-cchhHhhhhhcCCceEEeehhhccCCCcceeecc---------------------------------
Confidence 234444333 6777788888999999998877643221111000
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (457)
....|...|++++|++|+..+++| ..|.|.+-.++.
T Consensus 119 ----------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 ----------------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ----------------------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 004588899999999999999999 889988877763
No 313
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.38 E-value=0.00021 Score=66.92 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=77.4
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 308 (457)
+..++.+ .++.|+.||.+ .++.+-........+. .... .+.... + ..++.+..+|.+..+|.++++..
T Consensus 145 ~~~v~v~~~~g~l~a~d~~-tG~~~W~~~~~~~~~~-~~~~-~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~----- 213 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAA-TGERLWTYSRVTPALT-LRGS-ASPVIA-D--GGVLVGFAGGKLVALDLQTGQPL----- 213 (377)
T ss_pred CCEEEEECCCCeEEEEEcC-CCceeeEEccCCCcee-ecCC-CCCEEE-C--CEEEEECCCCEEEEEEccCCCEe-----
Confidence 3455556 89999999998 4443322211100000 0000 111111 2 35677888899999999888643
Q ss_pred cccccccccCcccceeccccce-EEEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccc
Q 012721 309 ILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386 (457)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (457)
+......+....... ....+ ....+ .+..++.+ .+|.++.||..+ ++.+-...... .
T Consensus 214 -W~~~~~~~~g~~~~~-~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~-~--------------- 272 (377)
T TIGR03300 214 -WEQRVALPKGRTELE-RLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRS-GRVLWKRDASS-Y--------------- 272 (377)
T ss_pred -eeeccccCCCCCchh-hhhccCCccEE--ECCEEEEEEcCCEEEEEECCC-CcEEEeeccCC-c---------------
Confidence 211000000000000 00000 11111 13345544 459999999975 66554443111 1
Q ss_pred cceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 387 KFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 387 v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
.... .++..|+.++.||.++.+|..+|+
T Consensus 273 -~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 273 -QGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred -cCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 1222 245678888899999999999884
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.34 E-value=0.00021 Score=71.82 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=73.1
Q ss_pred eEEEEEecCCccEEEEEc----cC-CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 270 ITSAEFHPIYCNLLAYSS----SR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~----~d-g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
=++|+|.-|| .++|+.. .+ ..|++||.. +.+....... .+--.+++|-|.|..+++
T Consensus 198 ~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~-----------------~~l~~~LsWkPsgs~iA~ 258 (1265)
T KOG1920|consen 198 KTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV-----------------EGLQHSLSWKPSGSLIAA 258 (1265)
T ss_pred CceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcc-----------------cccccceeecCCCCeEee
Confidence 3578999999 9998843 23 789999977 4332100000 123467999999999997
Q ss_pred E----ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE---EeCCCcEEEEecCCC
Q 012721 345 R----DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT---GSYSNLLRIFSHGVG 416 (457)
Q Consensus 345 ~----~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s---~~~dg~i~iw~~~~~ 416 (457)
- +++.|.++.-+ |-.-..+...... ....+..++|+.++..||. ......|++|-+.+-
T Consensus 259 iq~~~sd~~IvffErN--GL~hg~f~l~~p~-----------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 259 IQCKTSDSDIVFFERN--GLRHGEFVLPFPL-----------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecCCCCcEEEEecC--CccccccccCCcc-----------cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3 34789998764 3222222211110 0001268999999999987 445556999998775
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.30 E-value=2.5e-07 Score=85.75 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=108.7
Q ss_pred cCCCCCeeEEEeCC-CCCEEEEe-----CCCeEEEEEcCCCc-ceeeeeecCCCcccC-CCCceEEEEEecCCccEEEEE
Q 012721 215 HAHDFNINSISNNS-DCETFVSA-----DDLRINLWNLEISD-QCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYS 286 (457)
Q Consensus 215 ~~h~~~v~~~~~~~-~~~~l~~~-----~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~ 286 (457)
.++...+++++|++ |.+.||+| .|..+.|||+.+.- .+... ..+.+ ......+++|..+. +++++|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~-klvlaG 172 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT-KLVLAG 172 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc-chhhcc
Confidence 57778899999988 67888887 36789999998321 11111 11222 33445688999887 899999
Q ss_pred ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecCcEEEEec-cCCCCceeE
Q 012721 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDI-RMDSTPVAT 364 (457)
Q Consensus 287 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~-~~~~~~~~~ 364 (457)
.....++++|++...... ..+. +..+..+..+| .+.|+++..+|.|-+||. +.-..++..
T Consensus 173 m~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~ 234 (783)
T KOG1008|consen 173 MTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQI 234 (783)
T ss_pred cccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceeccccCceeeccchhhhccHHHH
Confidence 999999999999642110 1111 13577788888 788999888999999994 322344444
Q ss_pred eeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCC
Q 012721 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGV 415 (457)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~ 415 (457)
+...++..+ ..++.++|+|... .+++.. ..++|+++++..
T Consensus 235 i~~~~N~~~-----------~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 235 ILRNENKKP-----------KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HhhCCCCcc-----------cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 433333211 0126899999633 344444 457899999864
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00014 Score=69.87 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=96.2
Q ss_pred CCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC----CccEEEEEccCCeEEEEEccCCe
Q 012721 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSSSRGFVRLVDMRQSA 301 (457)
Q Consensus 227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~----~~~~l~~~~~dg~i~lwd~~~~~ 301 (457)
.-+|+++++| .||.|.|..+-+.. ....++ -..++.+|+++|+ .++.+++|+.-| +.++.-+--+
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~d--------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDD-EITQYD--------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCc-cceeEe--------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 5589999999 99999999888443 333322 2367899999998 236899999888 7776533211
Q ss_pred eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCC
Q 012721 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN 381 (457)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (457)
.. ..+ ....-.++|.++.|. |.+||-++|-.|++||... .+.+..+......+. .+.+
T Consensus 150 nk---~~v------------~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~f-- 207 (846)
T KOG2066|consen 150 NK---DSV------------VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELF-- 207 (846)
T ss_pred Cc---cce------------eeecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccC--
Confidence 00 011 112235789999998 8899999998899999976 555544443322110 0000
Q ss_pred CCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 382 ~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
...+.|.++.+.+ .|-. -+|+|..++
T Consensus 208 -----pphl~W~~~~~LV-IGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 208 -----PPHLHWQDEDRLV-IGWG-DSVKICSIK 233 (846)
T ss_pred -----CCceEecCCCeEE-EecC-CeEEEEEEe
Confidence 0368888776544 4443 368888887
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.24 E-value=4.8e-05 Score=71.09 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=109.9
Q ss_pred CCCeeEEEeCCCCCEEEEe--CC---CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe-
Q 012721 218 DFNINSISNNSDCETFVSA--DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF- 291 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~--~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~- 291 (457)
...+..-+|+|++..++.- .. ..+.+++++ .++...+. ++.++ -...+|+|||..++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~~~~i~-----~~~g~---~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN-TGKRPVIL-----NFNGN---NGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEecc-CCccceee-----ccCCc---cCCccCCCCCCEEEEEECCCCCc
Confidence 4456677899999887653 22 359999998 44444432 12333 3456899999556666667776
Q ss_pred -EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeec
Q 012721 292 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 292 -i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~ 368 (457)
|.++|+.++... ++... .+.-+.-.|+|||++|+-.+| |.-.||-...++.....+...
T Consensus 263 ~iy~~dl~~~~~~----~Lt~~--------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 263 DIYLMDLDGKNLP----RLTNG--------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred cEEEEcCCCCcce----ecccC--------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 555566665421 21111 122336789999999997665 554555444335544555443
Q ss_pred cccccccccccCCCCccccceEEEcCCCcEEEEEeCC-Cc--EEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NL--LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~--i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
...- ..-.|+|||++|+..+.. |. |.+.++.++.. ...-.+........+.|++....+
T Consensus 325 ~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 325 GGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEE
Confidence 3321 257899999999877753 44 77777777743 223334444555666666665554
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=6.7e-05 Score=72.93 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=98.5
Q ss_pred eeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc---------CC
Q 012721 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RG 290 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---------dg 290 (457)
|.-++. +++++.+| ..|+|.+-|.+ ..+.+.. +..|++.|.++. -.| ++|++++. |.
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~-s~~~iht-------~~aHs~siSDfD--v~G-NlLitCG~S~R~~~l~~D~ 246 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPN-SFETIHT-------FDAHSGSISDFD--VQG-NLLITCGYSMRRYNLAMDP 246 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCC-cCceeee-------eeccccceeeee--ccC-CeEEEeecccccccccccc
Confidence 444444 68899999 99999999998 5555544 678999887655 456 78888874 45
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC--CCeEEEEecCcEEEEeccCCCCc-eeEeee
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTP-VATFKI 367 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~~~i~~wd~~~~~~~-~~~~~~ 367 (457)
-|+|||+|+.+... .+.... .-.-+.|.|. .+..++.+.|...+-|....+.+ ...+..
T Consensus 247 FvkVYDLRmmral~-PI~~~~-----------------~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v 308 (1118)
T KOG1275|consen 247 FVKVYDLRMMRALS-PIQFPY-----------------GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV 308 (1118)
T ss_pred hhhhhhhhhhhccC-Cccccc-----------------CchhhhhcccccceEEEEecccceeeccccccCCCccceeEE
Confidence 58999999875431 111111 1134566664 33334444589999884332333 334433
Q ss_pred ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
+..... +..+++|++++.||.|..+|.|.+|.
T Consensus 309 ~p~~s~-------------i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 309 NPNGSG-------------ISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCc-------------ceeEEecCCCceEEEecccCcEeeec
Confidence 332210 15899999999999999999999998
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00068 Score=65.86 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=100.1
Q ss_pred eeEEEeCCCCCEEEE-e-CCC----eEEEEEcCCC-----cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC
Q 012721 221 INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (457)
Q Consensus 221 v~~~~~~~~~~~l~~-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 289 (457)
|..+-...+..+|++ | +++ .|++|+++.. .++.....+-+........++.+++.+.+- +.+|+|-.+
T Consensus 68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~n 146 (933)
T KOG2114|consen 68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTN 146 (933)
T ss_pred hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecC
Confidence 333333334456665 4 444 6999999743 223311111111123345778899999987 999999999
Q ss_pred CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-EEEEecCcEEEEeccCCCCceeE-eee
Q 012721 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTPVAT-FKI 367 (457)
Q Consensus 290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~~~i~~wd~~~~~~~~~~-~~~ 367 (457)
|.|..+.=.-- .+...+.-- ......+|+.+++..+++. +.+++-..|.+|.+.. ..+... +..
T Consensus 147 G~V~~~~GDi~--RDrgsr~~~-----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~ 212 (933)
T KOG2114|consen 147 GLVICYKGDIL--RDRGSRQDY-----------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDN 212 (933)
T ss_pred cEEEEEcCcch--hccccceee-----------eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeecc
Confidence 99988742211 011111111 1112478999999998877 4455557899999962 233333 443
Q ss_pred ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe-cCCCcc
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNEN 430 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~~v 430 (457)
|.... .+.++++....+++++. ..+.+|+.... ..-..+. +|....
T Consensus 213 ~G~~l---------------nCss~~~~t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 213 NGISL---------------NCSSFSDGTYQFICAGS-EFLYFYDSDGR-GPCFAFEVGEKKEM 259 (933)
T ss_pred CCccc---------------eeeecCCCCccEEEecC-ceEEEEcCCCc-ceeeeecCCCeEEE
Confidence 43322 35566655443544443 46888987754 3334444 555433
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.10 E-value=0.00043 Score=69.75 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=51.4
Q ss_pred eEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE---EccCCeEEE
Q 012721 222 NSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY---SSSRGFVRL 294 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~---~~~dg~i~l 294 (457)
.+++|-|.|..+++- .|+.|.+|..+ +.....+.++ +......+..++|+.++ ..|++ ......|++
T Consensus 245 ~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~---~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~l 318 (1265)
T KOG1920|consen 245 HSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLP---FPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQL 318 (1265)
T ss_pred cceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccC---CcccccchheeeecCCC-CceeeeecccccceEEE
Confidence 478999999999882 56789999876 4333333222 22233348999999998 88887 445556999
Q ss_pred EEccCC
Q 012721 295 VDMRQS 300 (457)
Q Consensus 295 wd~~~~ 300 (457)
|-+.+-
T Consensus 319 wt~~Ny 324 (1265)
T KOG1920|consen 319 WTTGNY 324 (1265)
T ss_pred EEecCe
Confidence 988764
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00059 Score=60.41 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=55.9
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.+++|+|...| ++..++.+..|++.|+++.......
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy---------------------------------------- 232 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSY---------------------------------------- 232 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccceeeehe----------------------------------------
Confidence 67999999654334 7888999999999999886554332
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCc
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD 250 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~ 250 (457)
..+ ..+++++|.-| ..+|++| .+|.|.+||++...
T Consensus 233 ---------------------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 233 ---------------------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ---------------------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 223 57889999765 4566777 99999999998543
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.06 E-value=0.00013 Score=70.99 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=103.2
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
.|.-++. ++..+.+|...|+|.+-|.++.+....+
T Consensus 179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~----------------------------------------- 213 (1118)
T KOG1275|consen 179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTF----------------------------------------- 213 (1118)
T ss_pred ceEEEEe----cCcEEEeecccceEEeecCCcCceeeee-----------------------------------------
Confidence 3555554 5678888999999999888776544332
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C---------CCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
..|.+.|..+.. .|+.|++| . |.-|++||++. -+.+..+ .
T Consensus 214 --------------------~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI-------~ 263 (1118)
T KOG1275|consen 214 --------------------DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPI-------Q 263 (1118)
T ss_pred --------------------eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCc-------c
Confidence 578888887666 57788875 2 55689999993 3333221 1
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
-+.+ ..-+.|+|.-+..+++++..|...+-|..+-.... ..++.. ..-.+.+..+.++++|+.||.
T Consensus 264 ~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v-----------~p~~s~i~~fDiSsn~~alaf 329 (1118)
T KOG1275|consen 264 FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMV-----------NPNGSGISAFDISSNGDALAF 329 (1118)
T ss_pred cccC-chhhhhcccccceEEEEecccceeeccccccCCCc--cceeEE-----------ccCCCcceeEEecCCCceEEE
Confidence 1222 25567889877889999999999998844321110 111111 111245999999999999999
Q ss_pred Eec-CcEEEEec
Q 012721 345 RDY-MNLKLWDI 355 (457)
Q Consensus 345 ~~~-~~i~~wd~ 355 (457)
|+. |.|.+|.-
T Consensus 330 gd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 330 GDHEGHVNLWAD 341 (1118)
T ss_pred ecccCcEeeecC
Confidence 975 99999974
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.05 E-value=0.00094 Score=64.01 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=53.7
Q ss_pred cceEEEEEccCCCeEEEEec--CcEEEEeccCCCC-----------ceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
.....+.++|||+++++++. ++|.+.|+..... ...+.....++ ...+|.+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 45778999999999998763 9999999975221 12222222222 4789999
Q ss_pred CCcEEEEEeCCCcEEEEecCC
Q 012721 395 DGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+|....|---|..|..|++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 998888888899999999986
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00018 Score=67.09 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=56.5
Q ss_pred ccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721 327 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 327 ~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
.+.+.+++++|+.+.++.|+ ||.|.+||... + +....... .++ +.++|+|+|.++++|+..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence 56899999999999988876 69999999864 2 22222122 211 579999999999999999
Q ss_pred CcEEEEecCCC
Q 012721 406 NLLRIFSHGVG 416 (457)
Q Consensus 406 g~i~iw~~~~~ 416 (457)
|.+.+||+.-.
T Consensus 321 GelQ~FD~ALs 331 (545)
T PF11768_consen 321 GELQCFDMALS 331 (545)
T ss_pred ceEEEEEeecC
Confidence 99999998755
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.007 Score=52.11 Aligned_cols=220 Identities=14% Similarity=0.222 Sum_probs=107.3
Q ss_pred CceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 33 DIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 33 ~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
+.++.++|+|+. .++|+....+.|..++.+ ++.+ ....+.+.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-------------------------r~i~l~g~----------- 64 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-------------------------RRIPLDGF----------- 64 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-------------------------EEEE-SS------------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-------------------------EEEeCCCC-----------
Confidence 459999999975 566777778877766654 3321 11123332
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+-.-.|++ -.++.++++.-.++.+.+.++..... .....
T Consensus 65 --~D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~------------------------------------ 104 (248)
T PF06977_consen 65 --GDYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD------------------------------------ 104 (248)
T ss_dssp --SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEE------------------------------------
T ss_pred --CCceeEEE--ECCCEEEEEEcCCCcEEEEEEeccccccchhh------------------------------------
Confidence 33677888 35665555555689898888843211 11000
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC--CcceeeeeecCCC-cccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKPS-NMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~-~~~~~ 266 (457)
++-+.+. +...+...+-.++|+|.++.|+.+ ...-..+|.++. ............. .....
T Consensus 105 -----~~~~~l~----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 105 -----VQKISLG----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp -----EEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred -----ceEEecc----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 0000000 002355678899999988888877 666666776652 1222221111000 01223
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...+.+++++|..+.+++.+..+..|..+|. +++... ......+.+ -+...-...-.|+|.++|++.+++.
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~-------gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFH-------GLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGG-------G-SS---SEEEEEE-TT--EEEEET
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCccc-------CcccccCCccEEEECCCCCEEEEcC
Confidence 3457889999987688888899999999994 443321 011111100 0000113467899999997666654
Q ss_pred cCcEEEE
Q 012721 347 YMNLKLW 353 (457)
Q Consensus 347 ~~~i~~w 353 (457)
-+..+++
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 3544443
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.01 Score=55.17 Aligned_cols=279 Identities=15% Similarity=0.155 Sum_probs=128.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCc------c--cchhhhhhccc---ccccC-----CCccceeeee
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ------H--ISRSELEKQMD---FTSTS-----HPEYRYKTEF 97 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~------~--~~~~~~~~~~~---~~~~~-----~~~~~~~~~~ 97 (457)
.|+++.|+++..-||+|...|.|.||.....+..... . -++..+..... +++.. ...+.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5899999999888999999999999998765432100 0 00000000000 00000 0112222233
Q ss_pred ccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccC
Q 012721 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (457)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (457)
+... ++|++++. |.-| +++.|..+|.+.|.|++............
T Consensus 83 ~~~~------------g~vtal~~--S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~-------------------- 127 (395)
T PF08596_consen 83 DAKQ------------GPVTALKN--SDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------- 127 (395)
T ss_dssp ---S-------------SEEEEEE---BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------
T ss_pred eccC------------CcEeEEec--CCCc-EEEEEecCCcEEEEECCCCeEEeeccccc--------------------
Confidence 3333 89999998 4444 99999999999999997765544322110
Q ss_pred CCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-----CCC---CEEEEe-CCCeEEEEEcCC
Q 012721 178 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLEI 248 (457)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~---~~l~~~-~d~~i~iwd~~~ 248 (457)
..........++++.|. .|+ -.+++| ..|.+.+|.+.-
T Consensus 128 ---------------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 128 ---------------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp -----------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred ---------------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 00002334456777774 233 356777 889999998752
Q ss_pred -CcceeeeeecCCCcccCCCCceEEEE-EecCC--------------------ccEEEEEccCCeEEEEEccCCeeeccc
Q 012721 249 -SDQCFNIVDMKPSNMDDLTEVITSAE-FHPIY--------------------CNLLAYSSSRGFVRLVDMRQSALCDHS 306 (457)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~~i~~v~-~~p~~--------------------~~~l~~~~~dg~i~lwd~~~~~~~~~~ 306 (457)
.+......... ....+.+.|..+. ++.+. +.++++ ..+..++++...+.+...
T Consensus 175 ~~~g~f~v~~~~--~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~-- 249 (395)
T PF08596_consen 175 SSNGRFSVQFAG--ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAH-- 249 (395)
T ss_dssp -GGG-EEEEEEE--EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---EEE--
T ss_pred CCCCceEEEEee--ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCCCcccc--
Confidence 22222111000 0123455555554 32221 013333 446678999887765432
Q ss_pred cccccccccccCcccceeccccceEEEEEc-----cCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721 307 ARILRDAAESHGSKSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 380 (457)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-----~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (457)
+.++. ......+.+- ..+..|++- .+|.|++|.+-. -+.+.....+...-..
T Consensus 250 -K~~~~--------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~------ 307 (395)
T PF08596_consen 250 -KSFDD--------------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSR------ 307 (395)
T ss_dssp -EE-SS---------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH------
T ss_pred -eeecc--------------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccc------
Confidence 22211 0112233332 234455544 459999999964 6666666553221000
Q ss_pred CCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 381 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 381 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
.....+++++|..++-.+. ..+.++.+
T Consensus 308 -----~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 308 -----RLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp -----HHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred -----cccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 0135778888887765544 33444443
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00021 Score=67.81 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=85.4
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
.|.--++ +..+++++.|+.-|.+.+|+-..++......
T Consensus 35 ~v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~---------------------------------------- 72 (726)
T KOG3621|consen 35 RVKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLKN---------------------------------------- 72 (726)
T ss_pred eEEEEEe--ecCCceEEEecccceEEEEecCchhhhcccc----------------------------------------
Confidence 3444444 5678899999999999999987765443211
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 273 (457)
.+-...+..+..+++..++|+| ..|.|.++-++. .......-..+ --+.|...|+++
T Consensus 73 --------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~-~d~~~~~rVTal 130 (726)
T KOG3621|consen 73 --------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTP-CDKSHKCRVTAL 130 (726)
T ss_pred --------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeecc-ccccCCceEEEE
Confidence 1233345566778888888888 999999998874 32221111111 123478999999
Q ss_pred EEecCCccEEEEEccCCeEEEEEccC
Q 012721 274 EFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
+|++++ ..+.+|...|+|.+-.+..
T Consensus 131 ~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 131 EWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Eecccc-cEEeecCCCceEEEEEech
Confidence 999999 9999999999999887776
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.98 E-value=0.0082 Score=51.71 Aligned_cols=213 Identities=16% Similarity=0.200 Sum_probs=105.9
Q ss_pred CcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 114 ~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..+..++| .++ +.++++....+.|...+. +|+....+.+.
T Consensus 22 ~e~SGLTy--~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~------------------------------------ 62 (248)
T PF06977_consen 22 DELSGLTY--NPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD------------------------------------ 62 (248)
T ss_dssp S-EEEEEE--ETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S------------------------------------
T ss_pred CCccccEE--cCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC------------------------------------
Confidence 55999999 465 446666777888877775 35555544322
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCccee-----eeeecCCCcccCC
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-----NIVDMKPSNMDDL 266 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~ 266 (457)
+ .+..-.+++..++.++++. .++.+.++++....... +.+.+. ....+
T Consensus 63 -----------------------g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~--~~~~~ 116 (248)
T PF06977_consen 63 -----------------------G-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG--FPNKG 116 (248)
T ss_dssp -----------------------S--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE-----S---
T ss_pred -----------------------C-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc--cccCC
Confidence 1 2356678888788777777 89999999985322221 122211 01235
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccC--Ceeec--cccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALCD--HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
...+-.++|+|.+ +.|+.+-+..-..+|.++. ..... .....+.. .......+.+++++|....|
T Consensus 117 N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~S~l~~~p~t~~l 185 (248)
T PF06977_consen 117 NKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD----------DKLFVRDLSGLSYDPRTGHL 185 (248)
T ss_dssp SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-----------HT--SS---EEEEETTTTEE
T ss_pred CcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeecccccccc----------ccceeccccceEEcCCCCeE
Confidence 5668999999988 5565666666667777654 11000 00000000 01112457899999975444
Q ss_pred E-EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721 343 L-SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 343 ~-s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw 411 (457)
. ..+. ..|..+|.. ++++..+.-..+.......+. .--.++|.++|+ |+..++-+..++|
T Consensus 186 liLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~------QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 186 LILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIP------QPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---------SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccC------CccEEEECCCCC-EEEEcCCceEEEe
Confidence 4 4433 888888853 777665554332110000000 013799999986 4445576766665
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00075 Score=63.21 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=89.9
Q ss_pred eEEEeCCCCCEEEEe--CCCe--EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe--EEEE
Q 012721 222 NSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF--VRLV 295 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~--i~lw 295 (457)
..-+|+|||+.|+.+ .|+. |+++|+. .+...+ +....+.-..-.|+|+|..++.+.+..|. |.++
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~-~~~~~~--------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLD-GKNLPR--------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCC-CCccee--------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 356799999998876 5665 5556666 333222 22233333467899999444444455665 4445
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCc--EEEEeccCCCCceeEeeecccc
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMN--LKLWDIRMDSTPVATFKIHEHL 371 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~--i~~wd~~~~~~~~~~~~~~~~~ 371 (457)
|+..+... ..++.. ..-....|+|||++|+..+ +|. |.+.|+..... ...+......
T Consensus 312 ~~~g~~~~---riT~~~---------------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~ 372 (425)
T COG0823 312 DLEGSQVT---RLTFSG---------------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLN 372 (425)
T ss_pred CCCCCcee---EeeccC---------------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccC
Confidence 55554321 011111 2222778999999999654 355 55666654222 3333322211
Q ss_pred ccccccccCCCCccccceEEEcCCCcEEEEEeCCC-cEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 436 (457)
...+|.+++..++..+..+ .=.++.+....+....+....+.+...+|+
T Consensus 373 ----------------e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w~ 422 (425)
T COG0823 373 ----------------ESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADGDVRVPAWS 422 (425)
T ss_pred ----------------CCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCcceeccccc
Confidence 2567888888777554432 223333332223333444444444444444
No 330
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.96 E-value=0.016 Score=53.82 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=57.5
Q ss_pred eeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-------
Q 012721 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------- 394 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------- 394 (457)
+.+....+.+++.+|++++.|+.+. |+|.++|+.. +..++.+++-.+. .+.|-.
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA-----------------qc~wi~~~~~~~~ 364 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA-----------------QCGWIEVPEEGDR 364 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc-----------------eEEEEEeeccccc
Confidence 4445566889999999988888766 9999999975 7777777765443 122210
Q ss_pred -------------CCcEE-EEEeCCCcEEEEecCCCCceeeEEec
Q 012721 395 -------------DGLHF-ATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 395 -------------d~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
...+| +-+-.-|.|-||.+++| ..+..+..
T Consensus 365 ~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g-~Rv~a~~v 408 (415)
T PF14655_consen 365 DRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQG-PRVAAFNV 408 (415)
T ss_pred ccccccccCCCCcceEEEEEEeccCCeEEEEecCCC-CEEEEEEe
Confidence 01233 34666899999999999 55555543
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.92 E-value=0.0038 Score=58.82 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=59.7
Q ss_pred cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ecCcEEEEeccCCC
Q 012721 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 359 (457)
Q Consensus 281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~ 359 (457)
..++.++.+|.+..+|..+++.. ++. .. .....+.. .+..|+.+ .++.+..+|..+ +
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~~------------~~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G 314 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIV------WKR-EY------------GSVNDFAV--DGGRIYLVDQNDRVYALDTRG-G 314 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEE------Eee-cC------------CCccCcEE--ECCEEEEEcCCCeEEEEECCC-C
Confidence 45666778999999999988633 322 00 01111222 23444444 458999999875 5
Q ss_pred CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
+.+-.......... .+... .+.+|+.++.||.|+..|..+| +.+...+
T Consensus 315 ~~~W~~~~~~~~~~--------------~sp~v--~~g~l~v~~~~G~l~~ld~~tG-~~~~~~~ 362 (394)
T PRK11138 315 VELWSQSDLLHRLL--------------TAPVL--YNGYLVVGDSEGYLHWINREDG-RFVAQQK 362 (394)
T ss_pred cEEEcccccCCCcc--------------cCCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEE
Confidence 54332211111100 12222 2457788999999999999999 4444443
No 332
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.023 Score=53.51 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=31.2
Q ss_pred cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeec
Q 012721 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~ 368 (457)
+++..|+.||+|++||.-.+ |.+.+...+. .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 57999999999999998766 9998888765 4555555544
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.86 E-value=0.0094 Score=54.01 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=71.7
Q ss_pred CCCCeeEEEeCCC-CCEEEEe----CCCe-EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE-Ec--
Q 012721 217 HDFNINSISNNSD-CETFVSA----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SS-- 287 (457)
Q Consensus 217 h~~~v~~~~~~~~-~~~l~~~----~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~-- 287 (457)
....+..+.|+|. ..+|+.| .+.. -+||-++..+.....+.. ......+..=-|.|+| ..|.. +.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-----~~~~e~~gHEfw~~DG-~~i~y~~~~~ 259 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-----RMEGESVGHEFWVPDG-STIWYDSYTP 259 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-----CCCCcccccccccCCC-CEEEEEeecC
Confidence 4456778899984 4555554 3442 366766654544433210 1112344455689999 54433 22
Q ss_pred --cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-Eec--C--------------
Q 012721 288 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M-------------- 348 (457)
Q Consensus 288 --~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~--~-------------- 348 (457)
.+..|.-+|..+++.. ..... ......-.++||++++- |+| .
T Consensus 260 ~~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp TT--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------
T ss_pred CCCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 2445666777765422 12221 23445556788988874 333 1
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~ 414 (457)
-|+++++.. .....+..|...-..+..-..... -...|+||+++|+-.| ..|...||=+.
T Consensus 321 ~i~~~~~~~--~~~~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 321 WIYLFDVEA--GRFRKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEEETTT--TEEEEEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EEEEecccc--CceeeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 355666653 222233333311100000000001 2689999999877554 57776666543
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.85 E-value=0.0092 Score=55.24 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=74.4
Q ss_pred CCCceEEEEEecCCccEEEEE--ccC---CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc-cCC
Q 012721 266 LTEVITSAEFHPIYCNLLAYS--SSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDG 339 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~--~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~g 339 (457)
-...+..+.|.+++ ..|+.. ..+ -.+.++|..++... .+... ... +--..-....|. +++
T Consensus 182 ~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~----~~~~e--~~~-------~Wv~~~~~~~~~~~~~ 247 (353)
T PF00930_consen 182 QDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETR----VVLEE--TSD-------GWVDVYDPPHFLGPDG 247 (353)
T ss_dssp SSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCE----EEEEE--ESS-------SSSSSSSEEEE-TTTS
T ss_pred CccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCcee----EEEEe--cCC-------cceeeecccccccCCC
Confidence 35668899999998 633333 222 23566777665322 11111 000 000112244554 666
Q ss_pred CeEEE-Ee-c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCC--Cc--EEE
Q 012721 340 QHLLS-RD-Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYS--NL--LRI 410 (457)
Q Consensus 340 ~~l~s-~~-~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~d--g~--i~i 410 (457)
..++- .. + ..|.+++.. +.....+....-.+. .-+.|+++++.|+ ++..+ +. |+.
T Consensus 248 ~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~G~~~V~--------------~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 248 NEFLWISERDGYRHLYLYDLD--GGKPRQLTSGDWEVT--------------SILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SEEEEEEETTSSEEEEEEETT--SSEEEESS-SSS-EE--------------EEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred CEEEEEEEcCCCcEEEEEccc--ccceeccccCceeec--------------ccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 55553 32 3 455556654 444444443333221 1367888877655 44442 34 444
Q ss_pred EecCCCCceeeEEecCCCcceeeeeccCCcceeccc
Q 012721 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 411 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 446 (457)
-++.+ ......+.........+.|+|++.-.....
T Consensus 312 v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 312 VSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EETTE-TTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEeCC-CCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 45551 234555555444446999999988766533
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.79 E-value=0.014 Score=50.60 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=58.1
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC---CCceEEEEEecCCccEEEEEccCCe-EEEEEccCCeeec
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCD 304 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~ 304 (457)
+..++.+ .++.|..+|++ .++.+-...........+ ...+..-....++ .+..++.++. +.+ |+.+++.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~-- 195 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEK-- 195 (238)
T ss_dssp TTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEE--
T ss_pred cCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCE--
Confidence 6777777 89999999998 555543332211000000 0111222222333 5555666664 555 9999862
Q ss_pred cccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCce
Q 012721 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 362 (457)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~ 362 (457)
.+.. . ...+..+ ...++..|+.++ ++.|..||+++ ++.+
T Consensus 196 ----~w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~ 235 (238)
T PF13360_consen 196 ----LWSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVV 235 (238)
T ss_dssp ----EEEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEE
T ss_pred ----EEEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEE
Confidence 2322 0 0112221 345677777665 59999999986 5543
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.78 E-value=0.0068 Score=58.35 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=36.7
Q ss_pred ceEEEcCCCcEEEEEeC-CCcEEEEecCCCCc-----------eeeEEecCCCcceeeeeccCCcceec
Q 012721 388 FECSVSGDGLHFATGSY-SNLLRIFSHGVGSA-----------GGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
..+.++|||+++++++. +.+|.|.|+.+.+. .....+.-.+ ....+|.++|.+..+
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~ayts 391 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTT 391 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEe
Confidence 57999999998886655 89999999988632 1222222222 234567777765544
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.78 E-value=9.7e-06 Score=75.54 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=124.1
Q ss_pred CCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc----cC
Q 012721 217 HDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SR 289 (457)
Q Consensus 217 h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~----~d 289 (457)
....+.|+++.- +...++.| .+|.|-+-.++.....-.. ...++....++++|++-..+.||.|- .|
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E------~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE------VTPGYARPCTSLAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce------ecccccccccccccccccHHHHHhhhhhhccc
Confidence 344667777654 44577788 8999999988743322111 14678889999999987646777764 35
Q ss_pred CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeec
Q 012721 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~ 368 (457)
-.+.|||+.++-........|. .+......+++|..+.+++.+|.. ..+.++|++........+.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-- 194 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFS------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-- 194 (783)
T ss_pred CCccceecccccCCCccccccc------------cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--
Confidence 6799999988621111001111 112345668899988899999876 8999999984221111121
Q ss_pred cccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEe-cCCCCceeeEEecCCCc----ceeeeeccCCcce
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFS-HGVGSAGGITVEAGKNE----NRKPILQAAPRAR 442 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~-~~~~~~~~~~~~~~~~~----v~~~~~~p~~~~~ 442 (457)
...+ ..+...| .+.|+++-. ||.|.+|| ..+-+..++.+.....+ +..++|.|..+..
T Consensus 195 Tk~v---------------qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 195 TKYV---------------QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhc---------------ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 1111 2466677 677887666 89999999 44444444444433433 8899999998665
Q ss_pred eccccc
Q 012721 443 RSSLSN 448 (457)
Q Consensus 443 ~~~~~~ 448 (457)
+..+..
T Consensus 259 la~l~R 264 (783)
T KOG1008|consen 259 LAVLSR 264 (783)
T ss_pred hhhhcc
Confidence 554433
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.016 Score=53.82 Aligned_cols=273 Identities=13% Similarity=0.049 Sum_probs=127.1
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
.|+.+.| .++...|+++...|.|-+|.+...+...........+...-.+. ..+.
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~-----------------------~~~~ 57 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFS-----------------------LNNS 57 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S-------------------------GGGS
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccc-----------------------ccCC
Confidence 4889999 56766899999999999998876533220000000000000000 0000
Q ss_pred ceEEEeccCc------cccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC-cccCC
Q 012721 195 ATKIANVGNS------VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDL 266 (457)
Q Consensus 195 ~i~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~ 266 (457)
.-.+-|+..- ....+...+ ....++|++++.+ |-.+++.| .+|.+.|.|++ +...+..-.+... .-...
T Consensus 58 ~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 58 PGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp S-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS-
T ss_pred CcceEEehhhCCcccccccCchhhe-eccCCcEeEEecC-CCcEEEEEecCCcEEEEECC-CCeEEeecccccccccccc
Confidence 1222232221 112222323 5568899999997 66699999 99999999998 4444333222210 11224
Q ss_pred CCceEEEEEec-----CC--ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE-EccC
Q 012721 267 TEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FAND 338 (457)
Q Consensus 267 ~~~i~~v~~~p-----~~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~~ 338 (457)
...++++.|.- |+ +-.+++|...|.+.+|.+.-............. ...+.+.|..+. ++.+
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~----------~~~~~~~i~~I~~i~~~ 204 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA----------TTNHDSPILSIIPINAD 204 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE----------E--SS----EEEEEETT
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec----------cccCCCceEEEEEEECC
Confidence 46788888862 11 137888889999999987521000000001100 012233444333 2211
Q ss_pred ---------------------CCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-----
Q 012721 339 ---------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV----- 392 (457)
Q Consensus 339 ---------------------g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 392 (457)
..+++.+++..++++.... .+............ ..+.+
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~ 268 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTIS 268 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecc
Confidence 1256677778999998864 44433332111111 23344
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC----CcceeeeeccCCcce
Q 012721 393 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK----NENRKPILQAAPRAR 442 (457)
Q Consensus 393 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~ 442 (457)
...+..|++-..+|.|+++.+..- +.+...+-.. .......++++|...
T Consensus 269 ~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 269 RNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred cCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCCCEE
Confidence 235678888999999999999987 4444444322 234445555555433
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.76 E-value=0.026 Score=50.25 Aligned_cols=259 Identities=12% Similarity=0.089 Sum_probs=130.2
Q ss_pred EEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 119 VRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 119 v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.. +++++.+++++ ..-.|.+||..+-.....+.++... +...........++.++
T Consensus 41 ~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~------------R~~~~~~~~~~~ls~dg 106 (342)
T PF06433_consen 41 VAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP------------RAQVVPYKNMFALSADG 106 (342)
T ss_dssp EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-------------B--BS--GGGEEE-TTS
T ss_pred eeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc------------hheecccccceEEccCC
Confidence 445 68888887743 4557999999988777666655431 11122222333445555
Q ss_pred cc------ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCc
Q 012721 189 EW------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 189 ~~------~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
+| .+...|.+.|+....- +..+ ....+..+--+++..+...|.||.+.-..+...++..+.-. + -
T Consensus 107 k~~~V~N~TPa~SVtVVDl~~~kv---v~ei---~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~ 177 (342)
T PF06433_consen 107 KFLYVQNFTPATSVTVVDLAAKKV---VGEI---DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K--V 177 (342)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEE---EEEE---EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E--E
T ss_pred cEEEEEccCCCCeEEEEECCCCce---eeee---cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec-c--c
Confidence 53 3444666777653221 1111 00112222112334455556899988888886555442210 0 1
Q ss_pred ccCCCCce-EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 263 MDDLTEVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 263 ~~~~~~~i-~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
+..-.+++ ..-++...+ ..++.-+.+|.|+--|+....... ...+....+.. ....+. .+...-+++++....
T Consensus 178 F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e-~~~~Wr--PGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 178 FDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAE-KADGWR--PGGWQLIAYHAASGR 251 (342)
T ss_dssp SSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHH-HHTTEE--E-SSS-EEEETTTTE
T ss_pred cCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccc-cccCcC--CcceeeeeeccccCe
Confidence 22222222 233445554 556667889999988887754221 11111100000 000000 133445777765544
Q ss_pred EEE----Ee-----c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcE
Q 012721 342 LLS----RD-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLL 408 (457)
Q Consensus 342 l~s----~~-----~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i 408 (457)
|.. +. + ..|-++|+.+ ++.+.++...... .++..+.|.+ +|++.+ .++.+
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l 314 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTL 314 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeE
Confidence 443 21 1 2466777775 7777777643322 4788888765 665544 57899
Q ss_pred EEEecCCCCceeeEEe
Q 012721 409 RIFSHGVGSAGGITVE 424 (457)
Q Consensus 409 ~iw~~~~~~~~~~~~~ 424 (457)
.+||..+| +....++
T Consensus 315 ~v~D~~tG-k~~~~~~ 329 (342)
T PF06433_consen 315 DVYDAATG-KLVRSIE 329 (342)
T ss_dssp EEEETTT---EEEEE-
T ss_pred EEEeCcCC-cEEeehh
Confidence 99999999 5555554
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0013 Score=65.51 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=71.9
Q ss_pred CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc
Q 012721 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (457)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 309 (457)
...+.| .++.|..||.+..+..+ +......+ .......|++-+.+| +||+|+.+|.||+||- .++..
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~--v~~~~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A------ 610 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKL--VDSQSKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA------ 610 (794)
T ss_pred CceEEEECCCceEEeccCCCCCce--eecccccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh------
Confidence 345567 99999999999554221 11111111 234557788877776 8999999999999993 22111
Q ss_pred ccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc
Q 012721 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (457)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~ 356 (457)
+..+.+-..+|..|..+.||++|++.++..+.|++..
T Consensus 611 ----------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 611 ----------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ----------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 1223344679999999999999998888888888863
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.012 Score=54.37 Aligned_cols=211 Identities=9% Similarity=0.027 Sum_probs=99.7
Q ss_pred CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCc-ccCC---------CCceEEEEEecCCccEEEEEc
Q 012721 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-MDDL---------TEVITSAEFHPIYCNLLAYSS 287 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~---------~~~i~~v~~~p~~~~~l~~~~ 287 (457)
...+....|+|+|+.++...++.|++++.. .+...++..-.... +.|- -+.-..+-|+||+ +.|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECC-CCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEE
Confidence 456788999999999999988999999987 34444332111000 0000 1123567899999 7777665
Q ss_pred c-CCeEEEEEc---cCCee---ecc--------------ccccccccccccCcc-c---ceeccccceEEEEEccCCC-e
Q 012721 288 S-RGFVRLVDM---RQSAL---CDH--------------SARILRDAAESHGSK-S---FFTEIIASISDIKFANDGQ-H 341 (457)
Q Consensus 288 ~-dg~i~lwd~---~~~~~---~~~--------------~~~~~~~~~~~~~~~-~---~~~~h~~~v~~~~~s~~g~-~ 341 (457)
. +..|+.+.+ ..... ... .+.++.. ....... . .+..-...+..+.|.++++ +
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~-~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL-ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES-SSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC-CCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 3 333333322 11100 000 0000000 0000000 0 0012245688999999998 4
Q ss_pred EEEE-e-c---CcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEc-CCC-cEEEEEeCCCcEEEEec
Q 012721 342 LLSR-D-Y---MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVS-GDG-LHFATGSYSNLLRIFSH 413 (457)
Q Consensus 342 l~s~-~-~---~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~-~~l~s~~~dg~i~iw~~ 413 (457)
++.- + + -.+.++|..+ ++..... ......+... ....|. +++ .+|.....||--+|+-+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~~------------~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDVY------------DPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSSS------------SEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EEEEcccCCCEEEEEEEECCC-CceeEEEEecCCcceeee------------cccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 4432 2 1 4456667765 3332222 2233333211 245554 554 45555557776555544
Q ss_pred CCCCceeeEEecCCCcce-eeeeccCCcceec
Q 012721 414 GVGSAGGITVEAGKNENR-KPILQAAPRARRS 444 (457)
Q Consensus 414 ~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~ 444 (457)
.........+....-.|. -+.+.+++....+
T Consensus 266 ~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 266 DLDGGKPRQLTSGDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp ETTSSEEEESS-SSS-EEEEEEEECTSSEEEE
T ss_pred cccccceeccccCceeecccceEcCCCCEEEE
Confidence 433223344444455553 4566677665554
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.67 E-value=0.0042 Score=58.54 Aligned_cols=167 Identities=10% Similarity=-0.007 Sum_probs=93.5
Q ss_pred CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
.......+.++|+|++++.+.||.-.|+... ..... ..+....+.|.+.+ .+|+-...++|.++.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNK------------AFGSGLSFVWSSRN--RYAVLESSSTIKIYK 95 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEE------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccc------------ccCceeEEEEecCc--cEEEEECCCeEEEEE
Confidence 3445789999999999999999999998843 22211 12445678899954 567777788899963
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 376 (457)
--+... .+.+.. ...+..+-. |.+|...+++.|.+||+.+ ++.+..+.... +
T Consensus 96 n~~~~~----~k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v---- 147 (443)
T PF04053_consen 96 NFKNEV----VKSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V---- 147 (443)
T ss_dssp TTEE-T----T-------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E-------
T ss_pred cCcccc----ceEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C----
Confidence 222111 012222 112333332 8888888778899999986 78888887543 1
Q ss_pred cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---------Cc-eeeEEecCCCcceeeeeccC
Q 012721 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SA-GGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~---------~~-~~~~~~~~~~~v~~~~~~p~ 438 (457)
..+.|++++.+++..+.+ .++|++.+.. -. ....+......|.+..|..+
T Consensus 148 -----------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 148 -----------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp -----------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred -----------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 479999999999998865 6778775422 11 22333332667777777766
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.64 E-value=0.019 Score=54.08 Aligned_cols=136 Identities=9% Similarity=-0.057 Sum_probs=76.3
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 308 (457)
+..++.+ .++.+..+|..+.....+. + +. ....+. ..+ ..++.++.+|.+..+|..+++..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~---~---~~----~~~~~~--~~~-~~vy~~~~~g~l~ald~~tG~~~----- 317 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR---E---YG----SVNDFA--VDG-GRIYLVDQNDRVYALDTRGGVEL----- 317 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee---c---CC----CccCcE--EEC-CEEEEEcCCCeEEEEECCCCcEE-----
Confidence 3445555 8899999999844333321 1 11 111122 234 56777888999999999888632
Q ss_pred cccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (457)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (457)
+.. .... .....+.... +.+|+.++ +|.+.+.|..+ ++.+.........+.
T Consensus 318 -W~~-~~~~---------~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~-------------- 369 (394)
T PRK11138 318 -WSQ-SDLL---------HRLLTAPVLY--NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL-------------- 369 (394)
T ss_pred -Ecc-cccC---------CCcccCCEEE--CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------
Confidence 221 0000 0011112221 34555554 59999999986 777766654322110
Q ss_pred ceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 388 FECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
....+ .+..|+.++.||.|+.+++
T Consensus 370 s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 370 SEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred eCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11222 2447888899999988775
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00097 Score=64.75 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=64.6
Q ss_pred CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
|...+.-.-.+++++|+|..-.||.|-.-|.+.+|...+.+. .+....|.
T Consensus 52 Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---------------------------htv~~th~--- 101 (1416)
T KOG3617|consen 52 PQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---------------------------HTVVETHP--- 101 (1416)
T ss_pred CCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee---------------------------eeeccCCC---
Confidence 444554455678899999999999999999999999876552 22334455
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~ 145 (457)
.+|..+.| |++|..++++..-|.+.+|...
T Consensus 102 ---------a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 ---------APIQGLDW--SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---------CCceeEEe--cCCCCeEEEcCCCceeEEEEee
Confidence 88999999 8999999999999999999876
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.59 E-value=0.0083 Score=43.74 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=47.0
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 35 VSAIEFDK---TG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 35 V~~~~~s~---~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|++|++.. || +.|++|+.|..|+||+-+. .+.++..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~---------- 42 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET---------- 42 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence 56777655 33 6889999999999999542 23333333
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEe
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~ 144 (457)
+.|+++.-+ .+..|+.+..+|+|-+|+-
T Consensus 43 ---~~v~~L~~~---~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 43 ---DKVTSLCSL---GGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ---cceEEEEEc---CCCEEEEEecCCEEEEEeC
Confidence 467888763 3368999999999999975
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00067 Score=60.08 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=71.8
Q ss_pred ceeccccceEEEEEccCCC-eEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcE
Q 012721 322 FFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLH 398 (457)
Q Consensus 322 ~~~~h~~~v~~~~~s~~g~-~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~ 398 (457)
.+..|...|..++|||..+ ++..++ +..|+|.|+++ ...+..+..+... ++++|.-| ..+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~~~~----------------wSC~wDlde~h~ 250 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAYNQI----------------WSCCWDLDERHV 250 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheeccCCc----------------eeeeeccCCcce
Confidence 5667778899999999887 455565 49999999986 6666677666433 69999876 467
Q ss_pred EEEEeCCCcEEEEecCCCCceeeEEec--CCCcceeeee
Q 012721 399 FATGSYSNLLRIFSHGVGSAGGITVEA--GKNENRKPIL 435 (457)
Q Consensus 399 l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~ 435 (457)
|+.|...|.|.|||++..+.....+.+ ...||-.++.
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAP 289 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecc
Confidence 888889999999999987655555544 3345554433
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.57 E-value=0.057 Score=51.06 Aligned_cols=147 Identities=9% Similarity=0.057 Sum_probs=71.1
Q ss_pred CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc
Q 012721 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (457)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 309 (457)
|.+|....++.|.+||+. .++.++.++. ..|..+.|++++ .+++..+.+ .+.+++........
T Consensus 117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~v---------~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~----- 179 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWE-TGKLIRRIDV---------SAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAA----- 179 (443)
T ss_dssp SSSEEEEETTEEEEE-TT-T--EEEEESS----------E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHH-----
T ss_pred CcEEEEECCCCEEEEEhh-HcceeeEEec---------CCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhccc-----
Confidence 777777766699999999 6666665422 247899999999 888888755 56776654420000
Q ss_pred ccccccccC-cccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721 310 LRDAAESHG-SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (457)
Q Consensus 310 ~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 388 (457)
.. .++-. ...........|.+.+|..+ -++.+.. +.++. +. +.....+..-+... +
T Consensus 180 -~~-~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~~lkY--l~--~Ge~~~i~~ld~~~---------------y 236 (443)
T PF04053_consen 180 -IP-EEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-NHLKY--LV--NGETGIIAHLDKPL---------------Y 236 (443)
T ss_dssp -BT-TTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-TEEEE--EE--TTEEEEEEE-SS-----------------E
T ss_pred -cc-ccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-CeEEE--EE--cCCcceEEEcCCce---------------E
Confidence 00 00000 00111122357888888866 3333433 35554 22 12222222222221 3
Q ss_pred eEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 389 ECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
=+...+..+.|.....|+.|..+.+...
T Consensus 237 llgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 237 LLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred EEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 4666776677888888888888877643
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.55 E-value=0.035 Score=50.70 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 216 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
...++|++++-- +..|+++.++.|.+|++.........- .......+.++... + ++|++|.....+.++
T Consensus 86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence 345678888766 445878877999999998443133221 11122356666554 4 689999988888887
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEecc
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 356 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~ 356 (457)
..+..... ...+.. . .....++++.|-++++.++.++. |.+.++...
T Consensus 155 ~~~~~~~~---l~~va~---d--------~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNK---LILVAR---D--------YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE----EEEEEE---E--------SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCE---EEEEEe---c--------CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55432110 011111 0 11246888999877777777765 999999875
No 349
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0052 Score=52.31 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=54.0
Q ss_pred CCCCeeEEEeCCCCCEEEEe-CCCe----EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe
Q 012721 217 HDFNINSISNNSDCETFVSA-DDLR----INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~-~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 291 (457)
+...|..++..+||..++.+ +.|. --+--....++.++.+++++.+.......|-+|+.+.+.....+++-..+.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 44567888888888887776 4332 111122224555666555544444555678888888765244445556677
Q ss_pred EEEEEccCCeee
Q 012721 292 VRLVDMRQSALC 303 (457)
Q Consensus 292 i~lwd~~~~~~~ 303 (457)
..+||..++...
T Consensus 304 ~vi~da~tG~vv 315 (366)
T COG3490 304 AVIWDAATGAVV 315 (366)
T ss_pred EEEEEcCCCcEE
Confidence 889999998644
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.43 E-value=0.014 Score=42.56 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=41.2
Q ss_pred CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe---cCCccEEEEEccCCeEE
Q 012721 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR 293 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~---p~~~~~l~~~~~dg~i~ 293 (457)
...|.++.-... ..|+.+ .+|+|-+|+-. .+.+++ + ....++++.+. -+|...|++|-.+|.|-
T Consensus 42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 346777777655 568888 99999999864 333332 2 22335666553 34445899999999874
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00089 Score=62.89 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE-EEEEecCCccEEEEEccCCeEEEE
Q 012721 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
...+.-+.|+|.-.++|.+ .+|.|-+..++ -.+.. + +.-+...++ +++|.||| ++||+|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw-t-------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW-T-------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeE-e-------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence 3467789999999999999 99999999887 33332 2 233445555 99999999 999999999999999
Q ss_pred EccCCeee
Q 012721 296 DMRQSALC 303 (457)
Q Consensus 296 d~~~~~~~ 303 (457)
|+.++...
T Consensus 90 Dve~~~~l 97 (665)
T KOG4640|consen 90 DVEKGGRL 97 (665)
T ss_pred EccCCCce
Confidence 99998654
No 352
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.34 E-value=0.11 Score=47.77 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=52.6
Q ss_pred CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe--cCCccEEEEEccCCeEEEEEc-cCCeeecccccccccc
Q 012721 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDA 313 (457)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~~dg~i~lwd~-~~~~~~~~~~~~~~~~ 313 (457)
....+.+||+. ..+.++++++.. ....+..|.|. |+...=++.+-...+|..|-- ..++-... ++.+..
T Consensus 220 yG~~l~vWD~~-~r~~~Q~idLg~-----~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~ip 291 (461)
T PF05694_consen 220 YGHSLHVWDWS-TRKLLQTIDLGE-----EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDIP 291 (461)
T ss_dssp S--EEEEEETT-TTEEEEEEES-T-----TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE-
T ss_pred ccCeEEEEECC-CCcEeeEEecCC-----CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee--EEEECC
Confidence 45789999999 777888876542 22335566664 433122333334445544433 33321111 111110
Q ss_pred c------cccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCce
Q 012721 314 A------ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV 362 (457)
Q Consensus 314 ~------~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~ 362 (457)
. ..+.....+..-..-|+.+..|.|.++|..++- |.|+.||+..+..+.
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 0 000111112222356899999999999998763 999999997544443
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0012 Score=62.08 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=70.9
Q ss_pred cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
..+..+.|+|.-.++|.+.. |.|-++.+. .+.+.++..+...+. .+++|.|||+.||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 46889999999999999876 888888775 455555554444331 3899999999999999999
Q ss_pred cEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 436 (457)
+|++.|+.++.........-..++.++.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999999854443334445677777775
No 354
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.29 E-value=0.00048 Score=39.59 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=28.3
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~ 60 (457)
|...|.+++|++++.++++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 778999999999999999999999999996
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.00059 Score=66.18 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=79.2
Q ss_pred CceEEEEEecCCccEEEEEc----cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 268 EVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~----~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
+..+-.+|+|.. .++++++ ..|.|.||- .+|+... + .... -.+++++|+|..-.|+
T Consensus 16 avsti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr-~-Vt~P----------------~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 16 AVSTISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQR-D-VTYP----------------VHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCc-c-cccc----------------eehhhhccChHHHHHh
Confidence 344556899998 8888876 457888873 4443210 0 0111 2367799999988888
Q ss_pred EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
.|-. |.+.+|.... .+.-.....|...+ .-+.||++|..|+++..-|.|.+|...
T Consensus 76 ~gwe~g~~~v~~~~~-~e~htv~~th~a~i---------------~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNT-TETHTVVETHPAPI---------------QGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccccceeEEEecCC-ceeeeeccCCCCCc---------------eeEEecCCCCeEEEcCCCceeEEEEee
Confidence 8876 9999999864 33333334455443 579999999999999999999999876
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.14 Score=45.89 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=74.2
Q ss_pred CeeEEEeCCCCCEEEEe-C-----------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc
Q 012721 220 NINSISNNSDCETFVSA-D-----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 287 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~ 287 (457)
..+.+...|+|.+.++. . -|.|+.+|.. +...+. +..+-...+.|+|+||+ +.|..+.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aD 181 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVAD 181 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC--CCEEEe-------ecCcEEecCceEECCCC-CEEEEEe
Confidence 34556667777666654 3 1334444432 333332 23444556789999999 6666655
Q ss_pred -cCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCce
Q 012721 288 -SRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV 362 (457)
Q Consensus 288 -~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~ 362 (457)
..+.|.-|++.. +..... .. ...+....+..-.++...+|.+-+++-. +.|.+|+.+ ++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~--~~----------~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~ 247 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGR--RG----------FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLL 247 (307)
T ss_pred CCCCeEEEEecCcccCccCCc--ce----------EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEE
Confidence 458888887763 111100 00 0111122355667788888888865433 499999986 7888
Q ss_pred eEeeeccc
Q 012721 363 ATFKIHEH 370 (457)
Q Consensus 363 ~~~~~~~~ 370 (457)
..+..+..
T Consensus 248 ~~i~lP~~ 255 (307)
T COG3386 248 GEIKLPVK 255 (307)
T ss_pred EEEECCCC
Confidence 88877643
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.19 E-value=0.25 Score=48.00 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
.+..|+.++.||.|+.+|.++|+ .+-..+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~-~lW~~~ 433 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGK-ELWKFR 433 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCc-eeeEEE
Confidence 55788889999999999999994 444443
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0017 Score=39.40 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=29.2
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~ 62 (457)
-...|.+++|+|..++||.|..+|.|.|+++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35679999999999999999999999999984
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.13 E-value=0.015 Score=58.27 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=87.8
Q ss_pred CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC------ccEEEEEccCCeEEEEEccCC
Q 012721 229 DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY------CNLLAYSSSRGFVRLVDMRQS 300 (457)
Q Consensus 229 ~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~------~~~l~~~~~dg~i~lwd~~~~ 300 (457)
+..+|+.. ....|+-.|++ .++.+..|++. ...+|..++ |+. +..-+.|-.++.+..||.|..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe-~GKVV~eW~~~------~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLE-RGKVVEEWKVH------DDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred ccceEeecCCCCCceEEEecC-CCcEEEEeecC------CCcceeEec--ccccccccCCCceEEEECCCceEEeccCCC
Confidence 34454544 56889999999 78888776443 112244443 321 134556777888999999964
Q ss_pred e--eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccccc
Q 012721 301 A--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (457)
Q Consensus 301 ~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 377 (457)
. +.....+.+ ......+|++-+.+| +||.|+. |.||+||- .+.+.-..+.+-..++
T Consensus 563 ~~k~v~~~~k~Y--------------~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI----- 621 (794)
T PF08553_consen 563 GNKLVDSQSKQY--------------SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPI----- 621 (794)
T ss_pred CCceeecccccc--------------ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCe-----
Confidence 3 111111111 113457788888777 6676665 99999994 3222222233333333
Q ss_pred ccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 378 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
+.++.+.||++|++.+. ..+.|++.
T Consensus 622 ----------~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 622 ----------IGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ----------eEEEecCCCcEEEEeec-ceEEEEEE
Confidence 79999999999998776 45666664
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.25 Score=46.68 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=35.1
Q ss_pred ceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-CCcceeeeeccC
Q 012721 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAA 438 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~ 438 (457)
..++.||++++||.-..+|.+.+....-. +....+.-. ..+...+.|-.+
T Consensus 220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 220 IKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECC
Confidence 68999999999999999999988876544 233333322 345566666654
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.13 E-value=0.0016 Score=37.24 Aligned_cols=28 Identities=32% Similarity=0.735 Sum_probs=25.1
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEE
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~ 143 (457)
..|.++.| .+++..+++++.|+.+++|+
T Consensus 13 ~~i~~~~~--~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAF--SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence 78999999 56778999999999999996
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.24 Score=46.31 Aligned_cols=180 Identities=11% Similarity=0.080 Sum_probs=110.5
Q ss_pred CeeEEEeCCCCCEEEEe-C---CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721 220 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
.-..++++|+++.+..+ . ++.+.+.|.. ......... .+. .+ ..+++.|+|...+++-..++.|.+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-t~~~~~~~~------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-TNKVTATIP------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCC-CCeEEEEEe------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 44578999999888876 4 6888888887 344443321 111 22 8899999993355555588999999
Q ss_pred EccCCeeec-cccccccccccccCcccceeccccceEEEEEccCCCeEEEEec----CcEEEEeccCCCCceeE-eeecc
Q 012721 296 DMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIHE 369 (457)
Q Consensus 296 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----~~i~~wd~~~~~~~~~~-~~~~~ 369 (457)
|........ ........ ...-..+.++|+|.++....+ +.+...|... +..... .....
T Consensus 188 ~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~ 252 (381)
T COG3391 188 DTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGS 252 (381)
T ss_pred eCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEecccccc
Confidence 977654331 00000111 123467889999998776543 4788888764 333332 22222
Q ss_pred ccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCCC---cceeeeeccCC
Q 012721 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN---ENRKPILQAAP 439 (457)
Q Consensus 370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~---~v~~~~~~p~~ 439 (457)
. .+ ..+..+|+|.++.+... .+.+.+-|..+. ........... ....+++.+..
T Consensus 253 ~-~~--------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 253 G-AP--------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred C-CC--------------CceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeecccccccccceeccceeec
Confidence 1 11 46899999999988754 488999998887 33343333322 34455555443
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.07 E-value=0.12 Score=47.30 Aligned_cols=136 Identities=12% Similarity=0.053 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCc---ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCe-eeccccccccccc
Q 012721 239 LRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA 314 (457)
Q Consensus 239 ~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~ 314 (457)
|.|.++++...+ ..++.+. -....++|++++-- .+ . |+++ ..+.|.+|++...+ ... ...+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-----~~~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~~--~~~~~~-- 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-----STEVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLLK--KAFYDS-- 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-----EEEESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEEE--EEEE-B--
T ss_pred cEEEEEEEEcccccceEEEEEE-----EEeecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccchh--hheecc--
Confidence 889999998421 1222211 12345789988866 33 4 4433 35889999998875 221 011111
Q ss_pred cccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc
Q 012721 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (457)
Q Consensus 315 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 393 (457)
...+.++... +.+|+.|+. ..+.++..+.....+..+....... .++++.|-
T Consensus 129 ------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l 181 (321)
T PF03178_consen 129 ------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL 181 (321)
T ss_dssp ------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred ------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence 1245555554 668998886 8888886654334344443322221 12678888
Q ss_pred CCCcEEEEEeCCCcEEEEecC
Q 012721 394 GDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 394 ~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+|+..++.+..+|.+.++...
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-
T ss_pred cCCcEEEEEcCCCeEEEEEEC
Confidence 676799999999999999886
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.021 Score=53.03 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=67.9
Q ss_pred EEe-CCCeEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccc
Q 012721 234 VSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (457)
Q Consensus 234 ~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~ 311 (457)
+.| .|+.|.-||++..+.. +..... +.+. ......|++-..+| +|++||.+|.||+||- .+...
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~--kqy~-~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A-------- 463 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQS--KQYS-TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA-------- 463 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeec--cccc-cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh--------
Confidence 347 8999999999855542 211100 1111 12345666666665 8999999999999996 33211
Q ss_pred ccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc
Q 012721 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (457)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~ 356 (457)
+..+.+...+|..+..+.+|++|++.++..+.+.++.
T Consensus 464 --------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 --------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred --------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1223445678999999999999998888777777764
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.05 E-value=0.21 Score=44.44 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=82.0
Q ss_pred CCCEEEEeCCCeEEEEEcCCCc----ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec
Q 012721 229 DCETFVSADDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304 (457)
Q Consensus 229 ~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~ 304 (457)
....|+.+....|.+|...... ...+.+. ....+.+++|.+ +.|+.|..++ ..+.|+.++...
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--------lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~- 170 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--------LPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPS- 170 (275)
T ss_pred cceEEEEEECCEEEEEEEECCcccccceeEEEE--------cCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCce-
Confidence 4455666666699998887421 1222221 237788999994 4577776555 688898865432
Q ss_pred cccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCcee--EeeeccccccccccccCCC
Q 012721 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNND 382 (457)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 382 (457)
.++.. ...............++..+.. +++++|++.++ .-.+.|.. +++.. .+.-...+
T Consensus 171 ---~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~~--G~~~r~~~i~W~~~p----------- 231 (275)
T PF00780_consen 171 ---ELLDP-SDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNKN--GEPSRKSTIQWSSAP----------- 231 (275)
T ss_pred ---EEeCc-cCCcchhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcCC--CCcCcccEEEcCCch-----------
Confidence 22211 0000000000011123333333 34677776543 22334443 44332 22222222
Q ss_pred CccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 383 ~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
.++++ ...||+..+. +.|.||++.++ +..+++...
T Consensus 232 -----~~~~~--~~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~ 266 (275)
T PF00780_consen 232 -----QSVAY--SSPYLIAFSS-NSIEVRSLETG-ELVQTIPLP 266 (275)
T ss_pred -----hEEEE--ECCEEEEECC-CEEEEEECcCC-cEEEEEECC
Confidence 35555 3457877666 45999999999 667776644
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.99 E-value=0.34 Score=46.05 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=25.2
Q ss_pred ceEEEEECCCCCEEEEE-eCCC----eEEEEEecCCcc
Q 012721 34 IVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGKN 66 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg-~~dg----~i~iw~~~~~~~ 66 (457)
.+...++||||++||.+ +..| .|+++|+.+++.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 45578999999999865 3333 599999998864
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.23 Score=46.54 Aligned_cols=180 Identities=11% Similarity=0.106 Sum_probs=114.3
Q ss_pred eeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc---CCeEEEE
Q 012721 221 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLV 295 (457)
Q Consensus 221 v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg~i~lw 295 (457)
-..++.++.+..++. . .++.|.+.|.. ......... .+ .....++++|++ +.+..+.. ++++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~------vG--~~P~~~~~~~~~-~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIP------VG--LGPVGLAVDPDG-KYVYVANAGNGNNTVSVI 145 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEee------ec--cCCceEEECCCC-CEEEEEecccCCceEEEE
Confidence 346778888875554 4 78999999977 333433321 11 256788999999 55555443 6889999
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCCCCcee-----Eeeec
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA-----TFKIH 368 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~~~-----~~~~~ 368 (457)
|..+.+... ....+ ..+ ..++++|+|..+.... ++.|.+.|... ..... .....
T Consensus 146 d~~t~~~~~---~~~vG--------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~ 206 (381)
T COG3391 146 DAATNKVTA---TIPVG--------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVG 206 (381)
T ss_pred eCCCCeEEE---EEecC--------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccC
Confidence 988876542 11111 123 7899999999887665 49999999753 22221 11112
Q ss_pred cccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
..+ ..+.++|+|.++...... +.+...|..++................+..+|++......
T Consensus 207 ~~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 207 TGP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA 270 (381)
T ss_pred CCC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence 221 478999999977765544 5899999888732222122222145677888888877663
No 368
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.59 E-value=0.57 Score=42.84 Aligned_cols=155 Identities=10% Similarity=0.049 Sum_probs=72.6
Q ss_pred EEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe--cCCccEEEEEc---c---------
Q 012721 224 ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS---S--------- 288 (457)
Q Consensus 224 ~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~---~--------- 288 (457)
..++|+.+.++.. .+..|+-.|++ ..+...++.+ ....+-...|. .++ ..++-.- .
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~-T~e~~~vy~~-------p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~ 156 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLD-TLEERVVYEV-------PDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWK 156 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETT-T--EEEEEE---------TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHH
T ss_pred eEEecCCCeEEEEECCCeEEEEECC-cCcEEEEEEC-------CcccccccceeeCCCc-cEEEEEEEeehhccCccccH
Confidence 4566777887766 77788888988 4444344322 23444334453 333 4433221 1
Q ss_pred ----------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-Eec---CcE--EE
Q 012721 289 ----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY---MNL--KL 352 (457)
Q Consensus 289 ----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~---~~i--~~ 352 (457)
...|.-.|+.+++.. .++.. ...+..+.|+|...-+++ |-+ ..| ||
T Consensus 157 ~f~e~~~a~p~~~i~~idl~tG~~~----~v~~~--------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 157 GFREFYEARPHCRIFTIDLKTGERK----VVFED--------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp HHHHHHHC---EEEEEEETTT--EE----EEEEE--------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred HHHHHHhhCCCceEEEEECCCCcee----EEEec--------------CccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence 112333344444321 22222 467888999997555443 422 333 78
Q ss_pred EeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-----CCCcEEEEecCCCCc
Q 012721 353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSA 418 (457)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-----~dg~i~iw~~~~~~~ 418 (457)
|-+++.+.....+..+.... .+..=-|.|||..|.--+ .+..|.-+|+.+++.
T Consensus 219 W~i~~dg~~~~~v~~~~~~e-------------~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 219 WTINTDGSNVKKVHRRMEGE-------------SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEETTS---EESS---TTE-------------EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred EEEEcCCCcceeeecCCCCc-------------ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 88876666665554443221 013456899998776433 244677788888843
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.57 E-value=0.13 Score=50.80 Aligned_cols=187 Identities=10% Similarity=0.037 Sum_probs=94.0
Q ss_pred CCeeEEEeCCCCCEEEEe-C------CC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC
Q 012721 219 FNINSISNNSDCETFVSA-D------DL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~-~------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 289 (457)
..+...+++|+|+.++.. . |. .|.+++.. +....+ ..+. ..+...|+|+| ..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~l-------t~g~--~~t~PsWspDG-~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQV-------LEGH--SLTRPSWSLDA-DAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceee-------ecCC--CCCCceECCCC-CceEEEecC
Confidence 467788999999988764 2 33 45555543 333222 1222 36778999998 766666433
Q ss_pred -CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc--CCCCceeEee
Q 012721 290 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR--MDSTPVATFK 366 (457)
Q Consensus 290 -g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~--~~~~~~~~~~ 366 (457)
..+++.+-...... ..... +...... .....|..+.|||||..|+.-.++.|++=-+. ..+. ..+.
T Consensus 418 ~~~~~v~~~~~~gql----~~~~v--d~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~ 486 (591)
T PRK13616 418 NTVVRVIRDPATGQL----ARTPV--DASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALT 486 (591)
T ss_pred cceEEEeccCCCceE----EEEec--cCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeec
Confidence 22333322111000 00010 0000000 12357999999999999987656777763221 1232 1221
Q ss_pred eccccccccccccCCCCccc-cceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec--CCCcceeeeeccC
Q 012721 367 IHEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA--GKNENRKPILQAA 438 (457)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~p~ 438 (457)
....... ...+ +.++.|..++.++ .+..++...+|.+.-.......+.+ ...++..++-+++
T Consensus 487 ~~~~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 487 NPREVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred ccEEeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 0000000 0001 1478999999855 5555554555655432222222233 3666777766653
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.19 Score=42.52 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=77.6
Q ss_pred ecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEe
Q 012721 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD 354 (457)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd 354 (457)
.++...+++.|+..+.+.-.|..+++.. |+.. -...+.+-+.- -|.+++.|.. |.+++.+
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~------We~i------------lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLI------WEAI------------LGVRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEE------eehh------------hCceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 3444478899999999999999998643 2210 00122221111 3778888887 9999999
Q ss_pred ccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
.++ +.....+..-+..- ......+++..|..|+.|+..+..|.++. ......+
T Consensus 80 ~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~-~cVyksk 132 (354)
T KOG4649|consen 80 VKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSK 132 (354)
T ss_pred ecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEeccccc-ceEEecc
Confidence 987 66665555443321 35677789999999999999999999887 4555544
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.48 E-value=0.83 Score=43.46 Aligned_cols=192 Identities=14% Similarity=-0.023 Sum_probs=88.3
Q ss_pred EEEeCCCCCEEEEe-C-----------CCeEEEEEcCCCcce-eeeeecCCCcccCCC-C-ceEEEEEecCCccEEEEEc
Q 012721 223 SISNNSDCETFVSA-D-----------DLRINLWNLEISDQC-FNIVDMKPSNMDDLT-E-VITSAEFHPIYCNLLAYSS 287 (457)
Q Consensus 223 ~~~~~~~~~~l~~~-~-----------d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~-~-~i~~v~~~p~~~~~l~~~~ 287 (457)
.+.|.++++.|+.. . ...|+.|.+.+.... ..+ +++.. . ....+..++++ ++|+..+
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lv-------fe~~~~~~~~~~~~~s~d~-~~l~i~~ 245 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELV-------FEEPDEPFWFVSVSRSKDG-RYLFISS 245 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEE-------EC-TTCTTSEEEEEE-TTS-SEEEEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeE-------EeecCCCcEEEEEEecCcc-cEEEEEE
Confidence 38899987776553 2 234788888743322 223 22222 2 26678899999 7665543
Q ss_pred c---C-CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c---CcEEEEeccCCC
Q 012721 288 S---R-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDS 359 (457)
Q Consensus 288 ~---d-g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~---~~i~~wd~~~~~ 359 (457)
. + ..+.+.|+..+.......+.+. .....+....-+..+.+++... + +.|...++....
T Consensus 246 ~~~~~~s~v~~~d~~~~~~~~~~~~~l~-------------~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 246 SSGTSESEVYLLDLDDGGSPDAKPKLLS-------------PREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp ESSSSEEEEEEEECCCTTTSS-SEEEEE-------------ESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EccccCCeEEEEeccccCCCcCCcEEEe-------------CCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 2 2 3477777766410000001111 1112232222222444444332 2 667667776422
Q ss_pred C--ceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCC--cEEEEecCCCCceeeEEecCCCcceeee
Q 012721 360 T--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPI 434 (457)
Q Consensus 360 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 434 (457)
. ....+..+...+ .-..+...+. +++..-.++ .|+++++..+...........+.+..+.
T Consensus 313 ~~~~~~~l~~~~~~~---------------~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~ 377 (414)
T PF02897_consen 313 PAEWWTVLIPEDEDV---------------SLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVS 377 (414)
T ss_dssp GGGEEEEEE--SSSE---------------EEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEE
T ss_pred cccceeEEcCCCCce---------------eEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccC
Confidence 1 122333333311 1122333343 444455554 5888999833133222223344456666
Q ss_pred eccCCcceeccccccc
Q 012721 435 LQAAPRARRSSLSNLT 450 (457)
Q Consensus 435 ~~p~~~~~~~~~~~~~ 450 (457)
..++.+..+..++++.
T Consensus 378 ~~~~~~~~~~~~ss~~ 393 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFT 393 (414)
T ss_dssp S-TT-SEEEEEEEETT
T ss_pred CCCCCCEEEEEEeCCC
Confidence 6677777777666654
No 372
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.54 Score=40.83 Aligned_cols=184 Identities=11% Similarity=0.171 Sum_probs=107.7
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.++.| +|+.+.|++......-.||=..+|+....+.+...
T Consensus 86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------------- 128 (316)
T COG3204 86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------------- 128 (316)
T ss_pred ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------------
Confidence 55999999 67877888777777777777777877766553321
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeee--ecCCCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i 270 (457)
...-.+++..++++.++- .++.+.++.+......+..- .++...........
T Consensus 129 -------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf 183 (316)
T COG3204 129 -------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF 183 (316)
T ss_pred -------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence 123356777777777777 89999999887443332211 11111122225567
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccc-ccccCcccceeccccceEEEEEccCCCeEE-EEec-
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY- 347 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~- 347 (457)
-.++|.|.. ..|..+-+-.=+.||.+..... .+..| ...+.... .-.-..|+++.|++....|. -+.+
T Consensus 184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~~~~~~~~--~~f~~DvSgl~~~~~~~~LLVLS~ES 254 (316)
T COG3204 184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHASLDPTADR--DLFVLDVSGLEFNAITNSLLVLSDES 254 (316)
T ss_pred eeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccccCccccc--ceEeeccccceecCCCCcEEEEecCC
Confidence 889999998 7777777777677777664321 11110 00000000 00114578889987544444 4443
Q ss_pred CcEEEEeccCCCCceeEeeeccc
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
+.+.-.|.. +.++..+.-+.+
T Consensus 255 r~l~Evd~~--G~~~~~lsL~~g 275 (316)
T COG3204 255 RRLLEVDLS--GEVIELLSLTKG 275 (316)
T ss_pred ceEEEEecC--CCeeeeEEeccC
Confidence 666666664 555555544433
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.40 E-value=0.015 Score=35.27 Aligned_cols=30 Identities=17% Similarity=0.577 Sum_probs=27.1
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEec
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~ 145 (457)
..|..++| +|..++||.++.||.|.+++++
T Consensus 12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence 67999999 5788899999999999999984
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.33 E-value=0.75 Score=41.29 Aligned_cols=162 Identities=11% Similarity=0.063 Sum_probs=89.2
Q ss_pred EEEeCCCCCEEEE----------e-CCCeEEEEEcCCCcceeeeeecCCC-cccCCCCceEEEEEecCCccEEEEEc--c
Q 012721 223 SISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSS--S 288 (457)
Q Consensus 223 ~~~~~~~~~~l~~----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~p~~~~~l~~~~--~ 288 (457)
.+..+|+++.+++ | ..-.|.+||.. .-....-+.+++. ... .......++++.++ +++++.. -
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TP 116 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTP 116 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B---BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchhe-ecccccceEEccCC-cEEEEEccCC
Confidence 4567899988876 3 34579999998 4444444444432 111 11122345778888 7666553 3
Q ss_pred CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeec
Q 012721 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 289 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~ 368 (457)
...|.|.|+..++.. ..+.. .....+-=+++..+...|.||.+.-..+...++.....
T Consensus 117 a~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~--- 174 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS--- 174 (342)
T ss_dssp SEEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE---
T ss_pred CCeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee---
Confidence 456888898887643 22222 22333332344456666778999888887667765222
Q ss_pred cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
...- .-+.|.+| ..-++...+..++--+.+|.|+--|+...
T Consensus 175 t~~F-----~~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 175 TKVF-----DPDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EEES-----STTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred cccc-----CCCCcccc--cccceECCCCeEEEEecCCEEEEEeccCC
Confidence 1110 00112222 34556666666666888898888887765
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.64 Score=40.42 Aligned_cols=172 Identities=13% Similarity=0.141 Sum_probs=103.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (457)
+..|+++.|+|+.+.|++......-.||=...|+.+ ++ .-+.+ |+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli-------rt------------------iPL~g~~D--------- 130 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI-------RT------------------IPLTGFSD--------- 130 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceE-------EE------------------ecccccCC---------
Confidence 455999999999988888777776666655555532 11 11222 22
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
--.|.|. .+|.+.++--.++.+.++.+..+.........
T Consensus 131 -----pE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~---------------------------------- 169 (316)
T COG3204 131 -----PETIEYI--GGNQFVIVDERDRALYLFTVDADTTVISAKVQ---------------------------------- 169 (316)
T ss_pred -----hhHeEEe--cCCEEEEEehhcceEEEEEEcCCccEEeccce----------------------------------
Confidence 2346673 56666666678888988887765332221100
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC---
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL--- 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--- 266 (457)
.-++... ...+...-.++|.|..+.|..+ .-+-+.||.+.........-. ...+
T Consensus 170 ----------------~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-----~~~~~~~ 227 (316)
T COG3204 170 ----------------KIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA-----SLDPTAD 227 (316)
T ss_pred ----------------EEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc-----ccCcccc
Confidence 0001111 1115567789999999888888 777788877762221221100 0111
Q ss_pred ----CCceEEEEEecCCccEEEEEccCCeEEEEEccCC
Q 012721 267 ----TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (457)
Q Consensus 267 ----~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~ 300 (457)
-..+.++.|++....+|+.+.+++.+.-.|....
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1346677888765478888888998888887654
No 376
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.22 E-value=0.56 Score=41.66 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=87.5
Q ss_pred CCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccc
Q 012721 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 306 (457)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 306 (457)
..++.|+.| .+| |++++........++. +...|..+...|+- +.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 357788888 777 9999984233333332 22339999999987 5555543 599999999875432110
Q ss_pred cccccccccccCcccceeccccceEEEE---EccCCCeEEEEecCcEEEEeccCC---C-CceeEeeecccccccccccc
Q 012721 307 ARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLY 379 (457)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~s~~g~~l~s~~~~~i~~wd~~~~---~-~~~~~~~~~~~~~~~~~~~~ 379 (457)
.. ... ...... .........+...+ -.....+|+.+...+|.+|..... . +..+.+......
T Consensus 73 ~~-~~~-~~~~~~-~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~-------- 141 (275)
T PF00780_consen 73 AP-LAF-PKSRSL-PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP-------- 141 (275)
T ss_pred cc-ccc-cccccc-cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc--------
Confidence 00 000 000000 00000112344443 223345666776689999888642 1 344555544433
Q ss_pred CCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
..++|. ++.|+.|..+ ...+.|+.++
T Consensus 142 --------~~i~~~--~~~i~v~~~~-~f~~idl~~~ 167 (275)
T PF00780_consen 142 --------SSIAFL--GNKICVGTSK-GFYLIDLNTG 167 (275)
T ss_pred --------EEEEEe--CCEEEEEeCC-ceEEEecCCC
Confidence 578887 5567777654 4778899877
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.029 Score=56.56 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=72.4
Q ss_pred cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCC
Q 012721 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 359 (457)
Q Consensus 281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~ 359 (457)
..++.|+..|.+...|+... +. ....+ ..-.++|++++|+.+|+.++.|- +|.|.+||+.. +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~----~~~~n-----------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LG----PLHQN-----------ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cc----hhhcC-----------CccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence 57889999999999888764 11 00111 01136899999999999999984 59999999975 7
Q ss_pred CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
++++.+..+..+... +..+.+..++..++++..-|. +|++
T Consensus 163 k~l~~i~e~~ap~t~------------vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTG------------VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeeeecCCccce------------EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 888888777655421 245566667777888877776 5554
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.05 E-value=0.79 Score=38.98 Aligned_cols=66 Identities=17% Similarity=0.061 Sum_probs=46.8
Q ss_pred CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (457)
Q Consensus 229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~ 303 (457)
-|++++.| ..+.+++.+.++..+...... ....-......+++ .+|.+|+.|++.+..|.++....
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~--------~~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI--------LETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee--------hhhhccceEEcCCC-ceEEEecCCCcEEEecccccceE
Confidence 36678888 999999999995545554321 11111223456777 89999999999999999886543
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.04 E-value=1.7 Score=43.16 Aligned_cols=125 Identities=11% Similarity=0.114 Sum_probs=63.1
Q ss_pred eeEEEeCCCCCEEEEe-CC-CeEEEEEcCCCcceeeeeecCCCccc-CCCCceEEEEEecCCccEEEEEccCCeEEE---
Q 012721 221 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL--- 294 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l--- 294 (457)
...-.|+|+|..+++. .. ..+++.+....++ +..+.+...... .....|..+.|+||| ..++... +|.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq-l~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ-LARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCce-EEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 6677899998877776 32 2344443321122 211111111111 234579999999999 6666554 467666
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCC
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST 360 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~ 360 (457)
-....+.........+. .+-...+.++.|.+++.+++...++...+|.+...+.
T Consensus 476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence 33233321110000010 1112336789999999866544444444555544343
No 380
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.98 E-value=0.31 Score=49.13 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=58.3
Q ss_pred cceEEEEEccCCCeEEEEecCcEEEEeccCC-CCceeEeeecccc-----ccccccccCCCCccccceEEEcCC---CcE
Q 012721 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMD-STPVATFKIHEHL-----RPKLCDLYNNDSIFDKFECSVSGD---GLH 398 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~d---~~~ 398 (457)
-.|..+.++|+|++|+..+...|.|-.+... +.. ..+.+.... +..-..+|....-..|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKN-GEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcc-ccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4689999999999999776655665555210 100 011100000 000011222233334578999996 589
Q ss_pred EEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 399 FATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 399 l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
|+.-..|+++++||+.....+.+++.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEE
Confidence 99999999999999987655555554
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.86 E-value=0.027 Score=46.55 Aligned_cols=143 Identities=11% Similarity=-0.037 Sum_probs=78.5
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccc
Q 012721 232 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (457)
Q Consensus 232 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~ 311 (457)
++++..|+.|.-++++......+. -..+... . --+.....+++|+.+|.|.+|+...-.. +...+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs-------e~~~~e~-~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~---~~d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS-------ERFIDEG-Q---RVVTASAKLMVGTSDGAVYVFNWNLEGA---HSDRVC 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh-------hhhhhcc-e---eecccCceEEeecccceEEEecCCccch---HHHhhh
Confidence 344457788888877632222211 0111111 1 1122226799999999999998763211 011111
Q ss_pred ccccccCcccceeccccceEEEEE-ccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721 312 DAAESHGSKSFFTEIIASISDIKF-ANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (457)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 389 (457)
. -...|.++.- ..++.+..++. +|.|+.|++.. .+.+.....|...- ...
T Consensus 99 s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~--------------~e~ 150 (238)
T KOG2444|consen 99 S-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES--------------GEE 150 (238)
T ss_pred c-------------ccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC--------------cce
Confidence 1 0122322221 12333445554 59999999975 67666666565221 134
Q ss_pred EEEcCCCcEEEEE--eCCCcEEEEecCCC
Q 012721 390 CSVSGDGLHFATG--SYSNLLRIFSHGVG 416 (457)
Q Consensus 390 ~~~s~d~~~l~s~--~~dg~i~iw~~~~~ 416 (457)
...+..+++|+.+ |.|..++.|++..-
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhhh
Confidence 5555667778777 88888888888654
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.70 E-value=1.3 Score=38.84 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=43.2
Q ss_pred CeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC
Q 012721 220 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 290 (457)
.|..+.++|||..++.- .++.|.+=-+.....- ...+.............+++++|.+++ .+++.+...+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~ 187 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAG 187 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCCC
Confidence 89999999999998774 3677877665422211 111100000112334678999999998 7776665443
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.70 E-value=2.9 Score=42.69 Aligned_cols=120 Identities=11% Similarity=0.050 Sum_probs=65.3
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC------Ce
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG------QH 341 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g------~~ 341 (457)
+.++....+.+. ..++.++.++.+...++..+.+.....+.+ ...|.|+.++|-| ++
T Consensus 488 ~~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~----------------e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 488 GKITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEF----------------EYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred CceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeehee----------------cceeEEEecccCCCCCCcceE
Confidence 444555555555 567777777777777776654221111222 2479999999752 36
Q ss_pred EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
++.|.. ..+.+.-...+...+.........+++ . +.-..+-.|..+|.++..||.+..|.+..
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR--------S---Il~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPR--------S---ILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCCccch--------h---eeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 677743 333222221223333222111122211 1 13456666789999999999987776543
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.12 Score=48.19 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=83.6
Q ss_pred EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--------eEEEEecCcEEEE
Q 012721 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--------HLLSRDYMNLKLW 353 (457)
Q Consensus 282 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--------~l~s~~~~~i~~w 353 (457)
+|..+.....++-.|+..|+.. ..|.. ...|+-+.+.|+.+ .|+--++..|.-|
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~--------------~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKF--------------EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeec--------------cCCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence 3444555566888888888655 44444 12366667777643 2333356889999
Q ss_pred eccCCCC-ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721 354 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 432 (457)
Q Consensus 354 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 432 (457)
|.+..++ .+...++|..... .- +++.-.....+||.|+.+|.|++||- .+......+.+-..+|..
T Consensus 410 DpRv~~~~kl~~~q~kqy~~k---------~n---Fsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYSTK---------NN---FSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKH 476 (644)
T ss_pred cccccCcceeeeeeccccccc---------cc---cceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceee
Confidence 9986555 3333344433211 00 23333334568999999999999997 664556677888899999
Q ss_pred eeeccCCccee
Q 012721 433 PILQAAPRARR 443 (457)
Q Consensus 433 ~~~~p~~~~~~ 443 (457)
|..+.+|.-.+
T Consensus 477 VdvtadGKwil 487 (644)
T KOG2395|consen 477 VDVTADGKWIL 487 (644)
T ss_pred EEeeccCcEEE
Confidence 98888876544
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.61 E-value=1.6 Score=39.06 Aligned_cols=171 Identities=12% Similarity=0.056 Sum_probs=80.8
Q ss_pred CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (457)
Q Consensus 229 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 308 (457)
++..++++..|. ||.....++..+.+ ..+-...+..+.-+++| .++++++......-||--. .
T Consensus 114 ~~~~~l~~~~G~--iy~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--------~ 176 (302)
T PF14870_consen 114 DGSAELAGDRGA--IYRTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--------T 176 (302)
T ss_dssp TTEEEEEETT----EEEESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------S
T ss_pred CCcEEEEcCCCc--EEEeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------c
Confidence 333344444343 33333355555443 23344778888889999 8888887766666777543 2
Q ss_pred cccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (457)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 388 (457)
.+..|... -...|.+|.|.|++.+.+.+..|.|++=+.. .....+..+...+. ..-+.+.
T Consensus 177 ~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---~~~~~w~~~~~~~~--------~~~~~~l 236 (302)
T PF14870_consen 177 TWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---DDGETWSEPIIPIK--------TNGYGIL 236 (302)
T ss_dssp S-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---TEEEEE---B-TTS--------S--S-EE
T ss_pred cceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCC---CCccccccccCCcc--------cCceeeE
Confidence 22221111 1357999999999988777766888877621 11222222111100 0011236
Q ss_pred eEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe--cCCCcceeeeeccC
Q 012721 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAA 438 (457)
Q Consensus 389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~p~ 438 (457)
+++|.+++...++|+. |.+ +...+.|+.=...-. .-.+....+.|.+.
T Consensus 237 d~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 8999999887776665 544 445566633333322 23455777777644
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.33 E-value=1.3 Score=38.66 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=85.1
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE-
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD- 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd- 296 (457)
.+.+.++++++..++.. .++.-.+|-....+..... +.+ ..+...+|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~~g--~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------LTG--GSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------ccC--CccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 68899999999987763 3444444444422332222 122 367778999998 7777777676667663
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----cCcEEEEeccCCCCc-eeEeeecccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL 371 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~~~i~~wd~~~~~~~-~~~~~~~~~~ 371 (457)
...+......+..... ...|..+.+||||..+|.-. ++.|.+--+.....- ...+......
T Consensus 95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 2333211100111111 12799999999999887532 377777665321111 1111100000
Q ss_pred ccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
. ......++++.|.+++.+++.+...+
T Consensus 161 ~--------~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 161 A--------PPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred c--------ccccCcceeeeecCCCEEEEEeCCCC
Confidence 0 00011236899999998877666544
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.29 E-value=2.4 Score=40.76 Aligned_cols=71 Identities=11% Similarity=-0.039 Sum_probs=44.2
Q ss_pred EEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCC
Q 012721 223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (457)
Q Consensus 223 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~ 300 (457)
.+.|+|....|+.= ....=.+++++.....++. + + ...+.|.|.+|.+||.++++..+..=.-++||-...
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 56799988887764 3333345566633333332 1 2 345789999999999444444455555678886554
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.05 Score=54.97 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=61.7
Q ss_pred CCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 339 g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
+-.++.|++ |.+-..|+...-.+ + |.+.. ...+|++++|+.||..++.|-.+|.|.+||+.++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~---~--~~ne~----------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~- 162 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGP---L--HQNER----------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA- 162 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccch---h--hcCCc----------cCCcceeeEecCCCceeccccCCCcEEEEEccCC-
Confidence 557788877 99998888632111 1 11110 1224479999999999999999999999999998
Q ss_pred ceeeEEecCCCcceeeeec
Q 012721 418 AGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~ 436 (457)
+..+.+.-|..|...+.++
T Consensus 163 k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred cceeeeeecCCccceEEEE
Confidence 7788888888888888765
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.25 E-value=0.32 Score=47.74 Aligned_cols=31 Identities=16% Similarity=0.462 Sum_probs=28.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEe
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~ 144 (457)
+.|.++.|...++++.+++.+..+.|.++.-
T Consensus 73 ~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 73 DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 7899999998899999999999999999863
No 390
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.19 E-value=1.7 Score=43.33 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=53.0
Q ss_pred CCCCeeEEEeC--CCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC--cc---EEEEEcc
Q 012721 217 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS 288 (457)
Q Consensus 217 h~~~v~~~~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--~~---~l~~~~~ 288 (457)
-...++.++++ ...++||++ ....|.||-........... .-..+...|.+|+|-++. +. .+++++-
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV-----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc-----cccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 34478899998 788899998 88888888766321111110 011366788999997654 12 7888899
Q ss_pred CCeEEEEEc
Q 012721 289 RGFVRLVDM 297 (457)
Q Consensus 289 dg~i~lwd~ 297 (457)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999888
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.09 E-value=0.094 Score=30.79 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.6
Q ss_pred CceEEEEECCC-C--CEEEEEeCCCeEEEEEecC
Q 012721 33 DIVSAIEFDKT-G--DYLAVGDRGGRVILFETVG 63 (457)
Q Consensus 33 ~~V~~~~~s~~-~--~~latg~~dg~i~iw~~~~ 63 (457)
++|+++.|||+ + ++||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999984 4 6999998899999999874
No 392
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.35 Score=49.58 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=90.3
Q ss_pred CeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCccee--eeeecCC-CcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721 220 NINSISNNSDCETFVSA---DDLRINLWNLEISDQCF--NIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~--~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 293 (457)
++..+...+|+...++. .+-.|..||++.-.... ....++. ...........++.|+|.-+...+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555566676655543 55688999997321111 0000000 011223345678889987656677788899999
Q ss_pred EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccc
Q 012721 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 372 (457)
Q Consensus 294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~ 372 (457)
+..+...... +..+.. ....++++|+|.|+.++.|.. |++.-|... .+....+.+....
T Consensus 182 V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~- 241 (1405)
T KOG3630|consen 182 VKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE- 241 (1405)
T ss_pred hhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC-
Confidence 8876543211 111111 356899999999999999976 999888764 3333333322211
Q ss_pred cccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
+ .+.|++++|-..-.++++-
T Consensus 242 -------e---~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 242 -------E---NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -------C---CcceeEEEEecceeEEEEe
Confidence 1 2234789998777777653
No 393
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.99 E-value=0.22 Score=42.33 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=54.3
Q ss_pred EecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEe
Q 012721 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (457)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd 354 (457)
+..++ .++++-..+|.+++||+.+++.....+.+...-.... .... .....|..+.++.+|.-|++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~--~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDK--SSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccC--CCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44566 7899999999999999999876644333222100000 0000 334678999999999988888888899999
Q ss_pred ccC
Q 012721 355 IRM 357 (457)
Q Consensus 355 ~~~ 357 (457)
.+.
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 864
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.88 E-value=0.76 Score=43.95 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=83.8
Q ss_pred CCeeEEEeCCCCCEE-EEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC---ccEEEEEccCCe
Q 012721 219 FNINSISNNSDCETF-VSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGF 291 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~---~~~l~~~~~dg~ 291 (457)
.++..++|. ||+.+ .+. .+|.+++=|-. .-+.-+.|..++|.|-+ ..-++.......
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkh 83 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKH 83 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEeccce
Confidence 378899998 55544 443 45666554433 12334668999999863 124444567788
Q ss_pred EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCcee-Eeeecc
Q 012721 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA-TFKIHE 369 (457)
Q Consensus 292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~-~~~~~~ 369 (457)
|.+|.+.-....... -.+.. . -.....|. ---..+.|+|....|+.-.. ..-.++++..++..++ .+.. .
T Consensus 84 VtVWqL~~s~~e~~K-~l~sQ-t--cEi~e~~p---vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~ 155 (671)
T PF15390_consen 84 VTVWQLCPSTTERNK-LLMSQ-T--CEIREPFP---VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT-S 155 (671)
T ss_pred EEEEEeccCcccccc-ceeee-e--eeccCCcc---cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC-C
Confidence 999998632111000 00000 0 00000000 01135789999988886543 2324455554333333 2332 2
Q ss_pred ccccccccccCCCCccccceEEEcCCCcEEEEEeCC-CcEEEEec
Q 012721 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSH 413 (457)
Q Consensus 370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~iw~~ 413 (457)
+.+ .+.+|.+||+.|+.+-.. =.-+|||-
T Consensus 156 G~I---------------hCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 GLI---------------HCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceE---------------EEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 332 689999999887765433 34678884
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.80 E-value=0.036 Score=54.85 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=45.2
Q ss_pred eEEEeCC---CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE-----------EEecCCccEEEEE
Q 012721 222 NSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA-----------EFHPIYCNLLAYS 286 (457)
Q Consensus 222 ~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v-----------~~~p~~~~~l~~~ 286 (457)
.-+.|.| +.-++..+ .++.+++..++...+ .+ +.+|...++.+ ..+||| ..++.+
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a 253 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWA 253 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH--HH-------HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEe
Confidence 4444543 66677777 889999887763222 11 33455444443 368999 999999
Q ss_pred ccCCeEEEEEcc
Q 012721 287 SSRGFVRLVDMR 298 (457)
Q Consensus 287 ~~dg~i~lwd~~ 298 (457)
+.||.+++|.+.
T Consensus 254 ~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 254 ISDGSVGFYQIY 265 (1283)
T ss_pred ecCCccceeeee
Confidence 999999999875
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.74 E-value=3.8 Score=38.65 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=63.7
Q ss_pred Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccc
Q 012721 235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (457)
Q Consensus 235 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~ 313 (457)
.| .+..|.-.|.+..+..+.+...+. +.. .....+..-... .++|.++..|-|++||.-....
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~esKd--Y~t-Kn~Fss~~tTes--GyIa~as~kGDirLyDRig~rA----------- 595 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVVESKD--YKT-KNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRA----------- 595 (776)
T ss_pred EeecccceEEecccccCCceeeeeehh--ccc-cccccccccccC--ceEEEecCCCceeeehhhcchh-----------
Confidence 45 777777778876665444432221 111 122334443444 4899999999999999543211
Q ss_pred ccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc
Q 012721 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (457)
Q Consensus 314 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~ 356 (457)
+..+.+....|-.+..+.+|+++++.+...+.+-|++
T Consensus 596 ------KtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 596 ------KTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ------hhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1112333567889999999999998877888888874
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=2.6 Score=36.57 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=87.3
Q ss_pred EeCCCCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc----------
Q 012721 225 SNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------- 288 (457)
Q Consensus 225 ~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---------- 288 (457)
.|+|||.+|++. +| |.|-|||.+..-+.+ .++..|.-....+.+.+|| +.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv-------gE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR 191 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV-------GEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGR 191 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccccee-------cccccCCcCcceeEEecCC-cEEEEeCCceecccccCc
Confidence 589999999986 43 789999998333333 2366777777889999999 87776532
Q ss_pred --------CCeEEEEEccCCeeeccccccccccccccCccccee--ccccceEEEEEccCCCeEEEEec-Cc----EEEE
Q 012721 289 --------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT--EIIASISDIKFANDGQHLLSRDY-MN----LKLW 353 (457)
Q Consensus 289 --------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~-~~----i~~w 353 (457)
.-.+.+.|..+++++.+ .++. .+.-+|..+...+||..++.+-. |. --+.
T Consensus 192 ~~lNldsMePSlvlld~atG~liek---------------h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLv 256 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEK---------------HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLV 256 (366)
T ss_pred cccchhhcCccEEEEeccccchhhh---------------ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcce
Confidence 11223333333332221 1111 23456788888888877765432 11 0011
Q ss_pred eccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCCCcEEEEecCCC
Q 012721 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVG 416 (457)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~iw~~~~~ 416 (457)
-....++++.-+...+.....+. .- +-+++.+.+..+++ |.=.-+...+||..+|
T Consensus 257 g~~~~g~~l~~~~~pee~~~~~a-----nY---igsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 257 GHFRKGEPLEFLDLPEEQTAAFA-----NY---IGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred eeccCCCcCcccCCCHHHHHHHH-----hh---hhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 11112344433332221100000 00 12566665544444 4444567889999999
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.69 E-value=3.4 Score=37.84 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFE 60 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~ 60 (457)
..++|+|.|||++|++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 4589999999988775 5699999999
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.65 E-value=0.14 Score=30.09 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=27.0
Q ss_pred CceEEEEEecCCc--cEEEEEccCCeEEEEEccC
Q 012721 268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 268 ~~i~~v~~~p~~~--~~l~~~~~dg~i~lwd~~~ 299 (457)
+.+.++.|+|... .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578999998763 5888888899999999996
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.62 E-value=0.18 Score=41.93 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=40.7
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE-EecCCccEEEEEccCCeEEEEEccCCee
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-FHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~-~~p~~~~~l~~~~~dg~i~lwd~~~~~~ 302 (457)
+..+++| .+|.|++|..+..+..... .......|.++- -..++ .+..++..||.|+.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 4567777 9999999998833332221 111223333332 22233 5888999999999999877643
No 401
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.46 E-value=3.6 Score=37.07 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=60.7
Q ss_pred cceEEEEEccCCCeEEEEec--CcEEEEeccC-CC----CceeEee-eccccccccccccCCCCccccceEEEcCCCcEE
Q 012721 328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRM-DS----TPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~-~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 399 (457)
..-+.|+||||++.|..++. +.|.-|++.. .+ +...... ...+.. =.++...+|.+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---------------DG~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---------------DGMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---------------CceEEeCCCCEE
Confidence 34578999999998887753 8888887752 11 1111111 111111 257777888888
Q ss_pred EEEeCCC-cEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721 400 ATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 400 ~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
+++-.+| .|.+|+.+ | +.+.........+.+++|-..
T Consensus 228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCC
Confidence 6555554 89999988 6 667777766677777778754
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.34 E-value=1.7 Score=42.82 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=46.0
Q ss_pred CCCCeeEEEe--CCCCCEEEE-eCCCeEEEEEcCC-----Cc---ceeeeeecCCCcccCCC-CceEEEEEecCCccEEE
Q 012721 217 HDFNINSISN--NSDCETFVS-ADDLRINLWNLEI-----SD---QCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLA 284 (457)
Q Consensus 217 h~~~v~~~~~--~~~~~~l~~-~~d~~i~iwd~~~-----~~---~~~~~~~~~~~~~~~~~-~~i~~v~~~p~~~~~l~ 284 (457)
..+.|..+.| .|+++.+++ |..+.|.+|.-.. .. ..++.++ +..++ .+|.+..|.++| .+++
T Consensus 71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~-----i~~~T~h~Igds~Wl~~G-~LvV 144 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID-----ISSHTPHPIGDSIWLKDG-TLVV 144 (631)
T ss_pred CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE-----eecCCCCCccceeEecCC-eEEE
Confidence 4567888888 467777666 4888888885421 11 1122222 23343 578899999998 5444
Q ss_pred EEccCCeEEEEEcc
Q 012721 285 YSSSRGFVRLVDMR 298 (457)
Q Consensus 285 ~~~~dg~i~lwd~~ 298 (457)
.+ ++.+.|+|-.
T Consensus 145 ~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 145 GS--GNQLFVFDKW 156 (631)
T ss_pred Ee--CCEEEEECCC
Confidence 33 4567888743
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.26 E-value=3.9 Score=36.66 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
-...|..+.|.|++.+.+.+..+.|+.=+.......... ...........+..++|.+++ ...++|+. |.+ +..
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~l-~~S 258 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GTL-LVS 258 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EEE
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeCC-ccE-EEe
Confidence 446899999999998888779999998872212222211 000112233458999999987 77776654 432 334
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEE
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~w 353 (457)
...++ .++. ... ...-...++.+.|.++.+-++.|.+|.|--|
T Consensus 259 ~DgGk-------tW~~-~~~------~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGK-------TWQK-DRV------GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSTTS-------S-EE--GG------GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCc-------cceE-Ccc------ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 44543 2222 000 0011246889999888888888988877554
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.20 E-value=3 Score=35.13 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=79.9
Q ss_pred CeeEEEeCCCCCEEEEe-CC---------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC
Q 012721 220 NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 289 (457)
..+.-..+|+|++++-. .| |.++.|-.. .+...+ ...-.--..++|+.+...+.++-+.+
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEccCc
Confidence 45556678899885543 32 455555544 111111 11223345688998874455666678
Q ss_pred CeEEEEE--ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEee
Q 012721 290 GFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 290 g~i~lwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~ 366 (457)
-.|.-|| ..++.... ...+++.....+. ++ ..--.++...+|.+.++. +.++|...|..+ ++.+.++.
T Consensus 180 ~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~------e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eik 250 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSN-RKVIFDLRKSQPF------ES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIK 250 (310)
T ss_pred eEEeeeecCCCcccccC-cceeEEeccCCCc------CC-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEEE
Confidence 8887787 66654331 1122222110000 00 111234456677766655 449999999986 89988888
Q ss_pred eccccccccccccCCCCccccceEEEcC
Q 012721 367 IHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
.....+ ++++|-.
T Consensus 251 lPt~qi---------------tsccFgG 263 (310)
T KOG4499|consen 251 LPTPQI---------------TSCCFGG 263 (310)
T ss_pred cCCCce---------------EEEEecC
Confidence 776544 6889864
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=1.1 Score=46.36 Aligned_cols=102 Identities=10% Similarity=-0.040 Sum_probs=67.1
Q ss_pred CeeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 220 NINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 220 ~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
...++.|+|.-.. .+.+ .|+.|.+..+......... -......++++|+|.| +.++.|...|++.-|-.
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence 4567888885433 3445 8999999887633333222 1244678999999999 99999999999988865
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
.-... +.+.. .+.. ....|.+|+|-....+++.
T Consensus 228 ~leik-----~~ip~---Pp~~------e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 228 SLEIK-----SEIPE---PPVE------ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccee-----ecccC---CCcC------CCcceeEEEEecceeEEEE
Confidence 43210 11111 1100 0367999999988888875
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.84 E-value=2.7 Score=39.14 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=55.1
Q ss_pred CeeEEEeCCCCCEEEEe-C-----------C-CeEEEEEcC-CCcce--eeeeecCCCcccCCCCceEEEEEecCCccEE
Q 012721 220 NINSISNNSDCETFVSA-D-----------D-LRINLWNLE-ISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~-----------d-~~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l 283 (457)
....++|.++|+++++. . . ..|.+++-. ..++. ..+ +.........+++.+++ |
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G---l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG---V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC---E
Confidence 45688999999988774 1 1 266666532 12322 122 22223346788898886 4
Q ss_pred EEEccCCeEEEEEccCCeeec-cccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 284 AYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 284 ~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
++++.....++.|........ ....++...... -..+......++|.|||.+.++
T Consensus 85 yV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~------~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 85 YVATPPDILFLRDKDGDDKADGEREVLLSGFGGQ------INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCC------CCcccccccCceECCCCCEEEe
Confidence 444444444444554321111 111122210000 0001234778999999987664
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.63 E-value=6.2 Score=36.82 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.7
Q ss_pred CceEEEEECCCCCEEEEE
Q 012721 33 DIVSAIEFDKTGDYLAVG 50 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg 50 (457)
.....|+|.++|+++++-
T Consensus 14 ~~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCCceeeECCCCCEEEEe
Confidence 456889999999988764
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.55 E-value=9.7 Score=38.82 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCC-c---------c--eeeeeecCCCcc-cCCCCceEEEEEecCC--ccEE
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEIS-D---------Q--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNLL 283 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-~---------~--~~~~~~~~~~~~-~~~~~~i~~v~~~p~~--~~~l 283 (457)
-.|..+.++|+|.+++......|.|..+-.. + . .-+.+.+...-+ ..+...|..+.|+|.+ +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4788999999999998874455555555311 0 1 111222221111 2345689999999974 2688
Q ss_pred EEEccCCeEEEEEccCC
Q 012721 284 AYSSSRGFVRLVDMRQS 300 (457)
Q Consensus 284 ~~~~~dg~i~lwd~~~~ 300 (457)
+.-..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88889999999999754
No 409
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.51 E-value=10 Score=39.00 Aligned_cols=182 Identities=11% Similarity=0.011 Sum_probs=90.8
Q ss_pred CCCeeEEEeCCC--C----CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC
Q 012721 218 DFNINSISNNSD--C----ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (457)
Q Consensus 218 ~~~v~~~~~~~~--~----~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 290 (457)
...|.|+.++|- + ++++.| ++..+.+.-.......+.....+ .+.-...|.-.++-.+. .+|.++..||
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~---~~~iPRSIl~~~~e~d~-~yLlvalgdG 605 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS---GEIIPRSILLTTFEGDI-HYLLVALGDG 605 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC---CCccchheeeEEeeccc-eEEEEEcCCc
Confidence 457889988873 2 267778 66665554433122222211111 12223445555666666 8999999999
Q ss_pred eEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecCcEEEEeccCCCCceeEeee
Q 012721 291 FVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 291 ~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~ 367 (457)
.+.-|.+.. +.+.+.....+.. .++.-=.|+. ....+++.+|.-..+|..+ ++++.+--.
T Consensus 606 ~l~~fv~d~~tg~lsd~Kk~~lGt---------------~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n--~kLv~spls 668 (1096)
T KOG1897|consen 606 ALLYFVLDINTGQLSDRKKVTLGT---------------QPISLRTFSSKSRTAVFALSDRPTVIYSSN--GKLVYSPLS 668 (1096)
T ss_pred eEEEEEEEcccceEccccccccCC---------------CCcEEEEEeeCCceEEEEeCCCCEEEEecC--CcEEEeccc
Confidence 988765544 4332221112221 3444445554 4567777787666666653 444432211
Q ss_pred ccccccccccccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEecCCCCc-eeeEEecCCCcceeeeecc
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQA 437 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~v~~~~~~p 437 (457)
-. .+. .-+.|+.+ ...|+++.. +.+.+..++.-.+ ...+. .-..+.+.+++++
T Consensus 669 ~k-ev~--------------~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~ 724 (1096)
T KOG1897|consen 669 LK-EVN--------------HMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTV-PLGESPRRICYQE 724 (1096)
T ss_pred hH-Hhh--------------hhcccccccCCceEEEecC-CceEEEEecchhhcceeee-cCCCChhheEecc
Confidence 11 111 12334332 234555544 4566776654322 23332 2334556666666
No 410
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.33 E-value=4.2 Score=33.95 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=42.0
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLS 344 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s 344 (457)
...+.+++..|-.+++++ |+ ++++.+|.+............++- ...+..|.. ....+++. +.|+|.
T Consensus 134 ~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDF-------e~~l~~~~~~~~p~~v~ic--~~yiA~ 202 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDF-------ERSLIDHIDNFKPTQVAIC--EGYIAV 202 (215)
T ss_pred CCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEec-------hhhhhheecCceEEEEEEE--eeEEEE
Confidence 356778888776535554 43 567899988764321111111111 001111111 24455554 779998
Q ss_pred EecCcEEEEec
Q 012721 345 RDYMNLKLWDI 355 (457)
Q Consensus 345 ~~~~~i~~wd~ 355 (457)
.++-.+++..+
T Consensus 203 ~s~~ev~Vlkl 213 (215)
T PF14761_consen 203 MSDLEVLVLKL 213 (215)
T ss_pred ecCCEEEEEEE
Confidence 88877777765
No 411
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.28 E-value=7.1 Score=39.18 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=90.2
Q ss_pred CCEEEEeCCCeEEEEEcCCCcceee-----eeecCCCccc---------CCCCceEEEEEecCC-ccEEEEEccCCeEEE
Q 012721 230 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL 294 (457)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~l 294 (457)
.++++.+..+.|.||+++....... .+.+++.... .-...|+.|....-| ...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 7788888899999999874322111 1111111000 012334444443322 258888999999999
Q ss_pred EEccCCeeecccccccccccc----ccCcc-cceeccccceEEEEEc--cCCCeEEEEec-CcEEEEeccCC-CCcee-E
Q 012721 295 VDMRQSALCDHSARILRDAAE----SHGSK-SFFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMD-STPVA-T 364 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~h~~~v~~~~~s--~~g~~l~s~~~-~~i~~wd~~~~-~~~~~-~ 364 (457)
|.+..-.... .......+ ....+ .+.......+++++++ ...++||+++. ..|.||-.... .+... .
T Consensus 129 Yyt~~I~~~i---~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 129 YYTETIIEAI---ERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEHHHHHHHH---HhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9875311000 00000000 00000 1122234589999998 78889998876 88888766431 11111 0
Q ss_pred eeeccccccccccccCCCCccccceEEEcCCC------cEEEEEeCCCcEEEEec
Q 012721 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG------LHFATGSYSNLLRIFSH 413 (457)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~------~~l~s~~~dg~i~iw~~ 413 (457)
-..+...+ -+++|-++. .+|++++-.|.+.+|++
T Consensus 206 s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 00122222 367776543 27888999999999888
No 412
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.83 E-value=9.1 Score=36.50 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCeeEEEeCCCCCEEEEeC-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC
Q 012721 219 FNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 279 (457)
..-+.|+|.||+++|++-. .|.|++++.. .........+..............|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4567899999998888874 7999999865 2322222111111011125668899999873
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=92.25 E-value=9.1 Score=35.12 Aligned_cols=158 Identities=10% Similarity=0.039 Sum_probs=86.8
Q ss_pred CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
...+..+.+.|++.+++++..|.+..- .+..++..... ...-...++++.+.+++ ..++++ ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence 456888999999988888877766542 11123333322 12234678899999988 766665 5676543223
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 377 (457)
..+. .+.. ...+.. .-...+..+.+.|++..++++.+|.+.. ... .++.............
T Consensus 243 d~G~-------sW~~-~~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d-~G~tW~~~~~~~~~~~---- 303 (334)
T PRK13684 243 DDLE-------SWSK-PIIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKD-GGKTWEKDPVGEEVPS---- 303 (334)
T ss_pred CCCC-------cccc-ccCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCC-CCCCCeECCcCCCCCc----
Confidence 3332 2221 000000 0013578889999988888887776653 332 2444333322111100
Q ss_pred ccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 378 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
..+.+.|..+++.++ .+..|.|.-|+
T Consensus 304 --------~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 304 --------NFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred --------ceEEEEEeCCCceEE-ECCCceEEEec
Confidence 014677776666555 55568887665
No 414
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.25 E-value=6.7 Score=36.55 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=66.9
Q ss_pred CCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 216 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l 294 (457)
...++|.++.|++|.+.+|.- .+++|.+++.. +.+...... .+.+..+..|....|..+ .-+|.-...| +.+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~---~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~ 136 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYT---QECKTKNANILGFCWTSS--TEIAFITDQG-IEF 136 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHH---HHhccCcceeEEEEEecC--eeEEEEecCC-eEE
Confidence 345599999999999999998 99999999985 332221110 113344566889999876 3455555555 567
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
|.....+.. .+..+ .|+..|..-.|.++-+.+.
T Consensus 137 y~v~pekrs---lRlVk-------------s~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 137 YQVLPEKRS---LRLVK-------------SHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred EEEchhhhh---hhhhh-------------hcccCccEEEEccccceEe
Confidence 765543311 12222 2345677777777766554
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.10 E-value=5.6 Score=37.13 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=19.4
Q ss_pred CCceEEEEEecCCccEEEE-EccCCeEEEEEccCC
Q 012721 267 TEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQS 300 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~-~~~dg~i~lwd~~~~ 300 (457)
..-|+.|..+.|. ++|.. +-.+|.|+.||+...
T Consensus 311 P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 311 PPLITDILISLDD-RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred CCceEeEEEccCC-CEEEEEcccCCcEEEEecCCC
Confidence 3568999999998 66655 458999999999764
No 416
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.96 E-value=13 Score=36.26 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=21.3
Q ss_pred CEEEEeeCCCeEEEEEecccceeEEE
Q 012721 128 SMFILSTNDKTIKLWKVRDQKVKKIK 153 (457)
Q Consensus 128 ~~l~s~s~d~~i~vw~~~~~~~~~~~ 153 (457)
..++.++.++.|..+|.++|+..-..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeee
Confidence 57888888999999999999876543
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=91.92 E-value=10 Score=34.87 Aligned_cols=118 Identities=9% Similarity=0.005 Sum_probs=68.7
Q ss_pred CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
-...++++.+.+++..++.+..|.+.+=..+ .+......... .......+.++.+.|++ ..+++ +.+|.+. ..
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~~~-G~~G~v~-~S 285 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIWAG-GGNGTLL-VS 285 (334)
T ss_pred CcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEEEE-cCCCeEE-Ee
Confidence 3457889999999998888877776543333 44444321110 01122457888999887 65554 4567554 33
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEec
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 355 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~ 355 (457)
...++ .|.. ...+ ..-....+.+.|..+++.+++|..|.|--|+-
T Consensus 286 ~d~G~-------tW~~-~~~~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 286 KDGGK-------TWEK-DPVG------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCCCC-------CCeE-CCcC------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 33332 2221 0000 00013577888888888888888888887764
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.85 E-value=3.7 Score=38.58 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=51.3
Q ss_pred cCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc----eEEEEEec------------
Q 012721 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV----ITSAEFHP------------ 277 (457)
Q Consensus 215 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----i~~v~~~p------------ 277 (457)
......+.+++.+|++++.++. .-|.|.++|+. .+..++++ ++..+. +....-..
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmW-------KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMW-------KGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhh-------ccCccceEEEEEeecccccccccccccCCC
Confidence 4555668899999999988888 78999999998 66666553 333221 11000000
Q ss_pred -C-CccEEEEEccCCeEEEEEccCCe
Q 012721 278 -I-YCNLLAYSSSRGFVRLVDMRQSA 301 (457)
Q Consensus 278 -~-~~~~l~~~~~dg~i~lwd~~~~~ 301 (457)
. .--+++.+-.-|.|.||+++++.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC
Confidence 0 00245566788999999999874
No 419
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.53 E-value=3 Score=35.48 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=24.5
Q ss_pred CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcC
Q 012721 217 HDFNINSISNNSDCETFVSADDLRINLWNLE 247 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~ 247 (457)
....|..+.++.+|.-+++-.+|..+.|+.+
T Consensus 65 ~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 65 SSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4557888889888877766577888999877
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.38 E-value=21 Score=35.76 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=49.2
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 274 (457)
.|++++... +.+...+-.|. ++..+.|+.+..+|+...+|++++|++- +..+....+. .+.....|..+.
T Consensus 65 ~I~If~~sG----~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~svg---~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 65 YIRIFNISG----QLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSVG---FESQMSDIVECR 134 (829)
T ss_pred eEEEEeccc----cchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc--hhhhcccccc---cccccCceeEEE
Confidence 366666543 33333322333 7889999988888877799999999987 3333221111 122233455555
Q ss_pred EecCCccEEEEEccCCeEEE
Q 012721 275 FHPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~l 294 (457)
+..+| +++-..+|.+.+
T Consensus 135 ~f~~G---Vavlt~~g~v~~ 151 (829)
T KOG2280|consen 135 FFHNG---VAVLTVSGQVIL 151 (829)
T ss_pred EecCc---eEEEecCCcEEE
Confidence 55566 344444555444
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.32 E-value=0.043 Score=50.62 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=96.1
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-e
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~ 346 (457)
.......|.|.+ .-++.++.+..+..||-.... . .+. ...+....++|..++..++.. .
T Consensus 35 v~pi~~~w~~e~-~nlavaca~tiv~~YD~agq~-~------le~------------n~tg~aldm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 35 VGPIIHRWRPEG-HNLAVACANTIVIYYDKAGQV-I------LEL------------NPTGKALDMAWDKEGDVLAVLAE 94 (615)
T ss_pred cccceeeEecCC-CceehhhhhhHHHhhhhhcce-e------ccc------------CCchhHhhhhhccccchhhhhhh
Confidence 334556788888 558888888899999865431 1 111 002445678888888777643 2
Q ss_pred -cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 347 -~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
.+.+++||+.+.....-...+.... .-+.|++....++.+...|.+.|++..+. +...+...
T Consensus 95 k~~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gk 157 (615)
T KOG2247|consen 95 KTGPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGK 157 (615)
T ss_pred cCCCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccch-hhhhhhcc
Confidence 3999999997532222122221111 12789999999999999999999999988 55555666
Q ss_pred CCCcceeeeeccCCcceec
Q 012721 426 GKNENRKPILQAAPRARRS 444 (457)
Q Consensus 426 ~~~~v~~~~~~p~~~~~~~ 444 (457)
|...+.+.++.+.+.....
T Consensus 158 h~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred cccceeEEEecccceeeec
Confidence 9999999999988766655
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.12 E-value=8.9 Score=35.14 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=36.1
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 278 (457)
.-+.|+|.|||+++++-..|.|++++.. ......+.... ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 3468999999988776699999999943 22212222221 123334567899999995
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.93 E-value=0.39 Score=48.05 Aligned_cols=104 Identities=16% Similarity=0.303 Sum_probs=57.1
Q ss_pred cchhhHHhhhcCCCCCCccc----cCCceEEEEECC---CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccc
Q 012721 11 SLEWKCSQAFGERNPDEELQ----DVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (457)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~s~---~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
..-|++.++-++..+...+. -...+.-+.|.| +..++..+..++.|++...++...
T Consensus 155 lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----------------- 217 (1283)
T KOG1916|consen 155 LFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----------------- 217 (1283)
T ss_pred hheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-----------------
Confidence 34467766655543332222 123445566655 567788888889999887765432
Q ss_pred cccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec
Q 012721 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (457)
Q Consensus 84 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~ 145 (457)
..+++|.....-.. ..+..+.-++=+ ++||+.|+.++.||.++.|.+.
T Consensus 218 -----------~l~rsHs~~~~d~a--~~~~g~~~l~~l-SpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 218 -----------SLFRSHSQRVTDMA--FFAEGVLKLASL-SPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred -----------HHHHhcCCCcccHH--HHhhchhhheee-CCCCcEEEEeecCCccceeeee
Confidence 23455651100000 011222222222 6888888888888888888753
No 424
>PHA02713 hypothetical protein; Provisional
Probab=89.57 E-value=24 Score=35.17 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=13.3
Q ss_pred CCCeEEEEec-C--cEEEEeccC
Q 012721 338 DGQHLLSRDY-M--NLKLWDIRM 357 (457)
Q Consensus 338 ~g~~l~s~~~-~--~i~~wd~~~ 357 (457)
+|++.+.|+. + .+..||..+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeeecceeehhhcCccc
Confidence 5677777753 4 677777764
No 425
>PHA02713 hypothetical protein; Provisional
Probab=89.38 E-value=19 Score=35.80 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.6
Q ss_pred CCcEEEEEeCCC--cEEEEecCCC
Q 012721 395 DGLHFATGSYSN--LLRIFSHGVG 416 (457)
Q Consensus 395 d~~~l~s~~~dg--~i~iw~~~~~ 416 (457)
++++.++|+.|+ .+..||..+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccc
Confidence 788888999888 7888888877
No 426
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.33 E-value=13 Score=34.77 Aligned_cols=185 Identities=11% Similarity=0.016 Sum_probs=94.5
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceee-eeecCCCcccCCCCceE-EE
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDDLTEVIT-SA 273 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~-~v 273 (457)
+++...+.....+.++.+ ..-...|..+-..|||+.+..-...++.++++.......+ +.+..+ ......|+ .+
T Consensus 199 ~~~L~g~~t~q~e~i~~L-~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dsp---g~~~~~Vte~l 274 (733)
T COG4590 199 IQILRGDRTTQQEIIRLL-SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSP---GDSRHQVTEQL 274 (733)
T ss_pred hhhhhcccCchhhhhhhc-CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCC---CchHHHHHHHH
Confidence 333333333333333332 4445567788889999999887558899999873222111 111100 00001122 11
Q ss_pred EEecCCccEEEEEccCCeEEEE-EccCCe-eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcE
Q 012721 274 EFHPIYCNLLAYSSSRGFVRLV-DMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 350 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~lw-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i 350 (457)
..-..| ..++.++.||.|.-| |.+.+. ...++++.++- . ..++..+.-..+.+-+++-+. |++
T Consensus 275 ~lL~Gg-~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l---~----------pa~~~~l~pe~~rkgF~~l~~~G~L 340 (733)
T COG4590 275 YLLSGG-FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKL---A----------PAEVQFLLPETNRKGFYSLYRNGTL 340 (733)
T ss_pred HHHhCc-eeEEEEcCCCceeeeeeeecCCCCcceeeecccc---C----------cccceeeccccccceEEEEcCCCce
Confidence 122334 677888889988766 554432 11122222222 0 122333322222333444443 777
Q ss_pred EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.++.... .+++-.-...+.. --+++||.+.++++-.. |.|+++.+++.
T Consensus 341 ~~f~st~-~~~lL~~~~~~~~----------------~~~~~Sp~~~~Ll~e~~-gki~~~~l~Nr 388 (733)
T COG4590 341 QSFYSTS-EKLLLFERAYQAP----------------QLVAMSPNQAYLLSEDQ-GKIRLAQLENR 388 (733)
T ss_pred eeeeccc-CcceehhhhhcCc----------------ceeeeCcccchheeecC-CceEEEEecCC
Confidence 7665533 3332221112221 25899999999986654 78999999887
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=26 Score=35.10 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=30.4
Q ss_pred cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee
Q 012721 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~ 366 (457)
+.+..+..||+.++|+--++ |.|.+-+.+. .+.+..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 56888999999999997765 9999988875 56665555
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.80 E-value=13 Score=31.15 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=24.0
Q ss_pred CCCeeEEEeCCCCCEEEEeCCCeEEEEEcC
Q 012721 218 DFNINSISNNSDCETFVSADDLRINLWNLE 247 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~ 247 (457)
..+..+++..|-...|+.|.++.+.+|.+.
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~ 163 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLK 163 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence 557788888886667777878899999887
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.29 E-value=34 Score=35.37 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=27.8
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeEEecC---CCcceeeeeccCCcce
Q 012721 398 HFATGSYSNLLRIFSHGVGSAGGITVEAG---KNENRKPILQAAPRAR 442 (457)
Q Consensus 398 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~ 442 (457)
.++.++.+|.+++.|-++|+ .+...+.. .+.+..-..+|++|..
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~-~l~~~~e~~vp~~~~~ge~~sptQp~~ 507 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGE-PIVPVEEVPVPQGAVPGERYSPTQPFS 507 (764)
T ss_pred EEEEECCCCEEEEEECCCCC-EEeeceeecCCccCCCCcccccccccc
Confidence 78899999999999999994 44433222 2223334445555444
No 430
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=6.8 Score=41.56 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=54.4
Q ss_pred CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCC-------cceeeeeecC-------C--Cccc-CCCCceEEEEEecCCc
Q 012721 218 DFNINSISNNSDCETFVSADDLRINLWNLEIS-------DQCFNIVDMK-------P--SNMD-DLTEVITSAEFHPIYC 280 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-------~~~~~~~~~~-------~--~~~~-~~~~~i~~v~~~p~~~ 280 (457)
...|+|+....+|+.+++|.|| .+|.+.-. .++.++--.+ | .++. .+.++|..++.....
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR- 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR- 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence 5578899988899999999666 44443211 1111110000 0 1223 567899999999887
Q ss_pred cEEEEEccCCeEEEEEccCC
Q 012721 281 NLLAYSSSRGFVRLVDMRQS 300 (457)
Q Consensus 281 ~~l~~~~~dg~i~lwd~~~~ 300 (457)
+++.+-++.|+|.+||+...
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ceeeeeccCceEEEEEccCC
Confidence 89999999999999999874
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.87 E-value=28 Score=32.81 Aligned_cols=155 Identities=8% Similarity=0.020 Sum_probs=81.9
Q ss_pred eeEEEeCCCCCEEEEeCCCeEE-EEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 221 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
...+..++++.+++.+..|.+. -||-- ....+.. -......++.+.+.+++ .+++++ .+|.+. +....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~-~S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLLT-RGGGLY-VSKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEEe-CCceEE-EecCC
Confidence 4455667888888888555443 34422 1111221 11234568899999998 766655 556543 33333
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (457)
++... ...+.. .+. ..-...+..+.|.+++..+++|..|.+....- .++.............
T Consensus 310 G~~~~--~~~f~~---~~~-----~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~------ 371 (398)
T PLN00033 310 GLTEE--DFDFEE---ADI-----KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA------ 371 (398)
T ss_pred CCccc--ccceee---ccc-----CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc------
Confidence 21000 001111 000 00013588999999999999998887776543 2555444332111100
Q ss_pred CCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (457)
Q Consensus 380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw 411 (457)
. .+.+.|.++++.++ .+.+|.|.-|
T Consensus 372 ---~---ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 372 ---N---LYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred ---c---eeEEEEcCCCceEE-EeCCcEEEEe
Confidence 1 15788877766555 4456776554
No 432
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.59 E-value=35 Score=33.68 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=22.0
Q ss_pred cCCc--cEEEEEccCCeEEEEEccCCeee
Q 012721 277 PIYC--NLLAYSSSRGFVRLVDMRQSALC 303 (457)
Q Consensus 277 p~~~--~~l~~~~~dg~i~lwd~~~~~~~ 303 (457)
.+|. ..++.+..+|.+.+.|.++++.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4552 37889999999999999999764
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.48 E-value=13 Score=28.52 Aligned_cols=80 Identities=15% Similarity=0.262 Sum_probs=49.8
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (457)
Q Consensus 36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (457)
..-.|......|+.++..|.|.|++....... ... .. ..++-+..+..
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~----------------------------~~~-~~---~~i~~LNin~~ 49 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR----------------------------TGR-QD---SDISFLNINQE 49 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccc----------------------------ccc-cc---CceeEEECCCc
Confidence 34567777778999999999999997655431 000 00 11344455567
Q ss_pred EEEEEEEe---cCCCCEEEEeeCCCeEEEEEecccc
Q 012721 116 INRVRWCA---APNGSMFILSTNDKTIKLWKVRDQK 148 (457)
Q Consensus 116 V~~v~~~~---s~~~~~l~s~s~d~~i~vw~~~~~~ 148 (457)
|++++--+ ......|+.|+.. ++..||+.+..
T Consensus 50 italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~ 84 (136)
T PF14781_consen 50 ITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNS 84 (136)
T ss_pred eEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCc
Confidence 88875532 2334566666654 57899988764
No 434
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.43 E-value=15 Score=36.63 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=29.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~ 65 (457)
...++++.-+|.|+.++.+..||.|++|+.....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 5578889999999999999999999999976543
No 435
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.36 E-value=26 Score=31.14 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=24.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~ 62 (457)
.-+-|+|+|.+.+-++....+...+||..
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCC
Confidence 34779999999887877777889999986
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.94 E-value=8.7 Score=31.28 Aligned_cols=31 Identities=29% Similarity=0.241 Sum_probs=25.7
Q ss_pred ceEEEEEecCC-----ccEEEEEccCCeEEEEEccC
Q 012721 269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 269 ~i~~v~~~p~~-----~~~l~~~~~dg~i~lwd~~~ 299 (457)
.+..++|+|.| ..+|++...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 24889999999999998664
No 437
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.93 E-value=37 Score=32.51 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=25.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~ 64 (457)
-+..+.|+|.|||++|++--..|.|++++..++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 456799999999988877554699999875544
No 438
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.52 E-value=4.9 Score=23.22 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=23.2
Q ss_pred cCCCeEEEEe--cCcEEEEeccCCCCceeEeeeccc
Q 012721 337 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 337 ~~g~~l~s~~--~~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
|++++|++++ ++.|.++|..+ .+.+..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCC
Confidence 5777777654 39999999975 677766665433
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.23 E-value=0.19 Score=46.56 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=65.2
Q ss_pred CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCccc-CCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
....++|..++..++. + ..+.+.+||+.+ ....++ + .. .|... -+.|++.+ ..++.+...|.+.+++
T Consensus 76 ~aldm~wDkegdvlavlAek~~piylwd~n~-eytqqL-E-----~gg~~s~s--ll~wsKg~-~el~ig~~~gn~viyn 145 (615)
T KOG2247|consen 76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVNS-EYTQQL-E-----SGGTSSKS--LLAWSKGT-PELVIGNNAGNIVIYN 145 (615)
T ss_pred hHhhhhhccccchhhhhhhcCCCeeechhhh-hhHHHH-h-----ccCcchHH--HHhhccCC-ccccccccccceEEEe
Confidence 4456777777776655 4 889999999983 322221 0 11 12222 26788888 8888888999999999
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
..+... .... ..|...++++++.+.+..+..++
T Consensus 146 hgtsR~------iiv~-----------Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 146 HGTSRR------IIVM-----------GKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred ccchhh------hhhh-----------cccccceeEEEecccceeeecCc
Confidence 877532 1111 22567899999998876555443
No 440
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.09 E-value=48 Score=33.09 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=33.3
Q ss_pred CCCEEEEe-CCC-----eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE-ecCCccEEEEEccCC------eEEEE
Q 012721 229 DCETFVSA-DDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-HPIYCNLLAYSSSRG------FVRLV 295 (457)
Q Consensus 229 ~~~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-~p~~~~~l~~~~~dg------~i~lw 295 (457)
+|.+.+.| .|| ++-.||..+ ..+... ..........+. .-+| .+.++|+.++ ++..|
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~--~~W~~v-------a~m~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVT--NKWTPV-------APMLTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCC--Cccccc-------CCCCcceeeeEEEEECC-EEEEEcCcCCCccccceEEEE
Confidence 57777777 664 466777662 222221 111112222222 2344 7788887554 46778
Q ss_pred EccCCe
Q 012721 296 DMRQSA 301 (457)
Q Consensus 296 d~~~~~ 301 (457)
|..+++
T Consensus 450 DP~t~~ 455 (571)
T KOG4441|consen 450 DPETNT 455 (571)
T ss_pred cCCCCc
Confidence 887754
No 441
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.97 E-value=47 Score=32.83 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.9
Q ss_pred EEcCCCc---EEEEEeCCCcEEEEecCCCC
Q 012721 391 SVSGDGL---HFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 391 ~~s~d~~---~l~s~~~dg~i~iw~~~~~~ 417 (457)
.+..+|+ .++.+..+|.+++.|-.+|+
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 3334665 78899999999999999994
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.93 E-value=10 Score=30.92 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=24.2
Q ss_pred cceEEEcCCC------cEEEEEeCCCcEEEEecCC
Q 012721 387 KFECSVSGDG------LHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 387 v~~~~~s~d~------~~l~s~~~dg~i~iw~~~~ 415 (457)
+..++|||-| .+|++-..++.|.||.-..
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4789999944 5888999999999999764
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.84 E-value=42 Score=32.24 Aligned_cols=83 Identities=11% Similarity=0.171 Sum_probs=46.4
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccC-C---eeecc----ccccccccccccCcccceec-cccceEEEEEccC
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-S---ALCDH----SARILRDAAESHGSKSFFTE-IIASISDIKFAND 338 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~---~~~~~----~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~ 338 (457)
-.|..+..++.| ..++..+.+|.+.++=.+. | ...+. ..+++.. ....|.. ..-.+..++|+|+
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i------~~~~ftss~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV------AERFFTSSTSLTLKQAAWHPS 176 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc------cceeeccCCceeeeeccccCC
Confidence 346778889999 8888888888665542111 0 00000 0011111 0111111 1124667899997
Q ss_pred C----CeEEEEecCcEEEEeccC
Q 012721 339 G----QHLLSRDYMNLKLWDIRM 357 (457)
Q Consensus 339 g----~~l~s~~~~~i~~wd~~~ 357 (457)
. .+++-.+|+.|++||+..
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCC
Confidence 5 444556779999999965
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.39 E-value=6.6 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=21.7
Q ss_pred CCCcEEEEEe-CCCcEEEEecCCCCceeeEEec
Q 012721 394 GDGLHFATGS-YSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 394 ~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
|++++|+++. .+++|.++|..++ .....+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~-~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN-KVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC-eEEEEEEC
Confidence 5677676655 4789999999887 44455544
No 445
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.57 E-value=59 Score=33.08 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=41.6
Q ss_pred eEEEeCCCCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721 222 NSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
..++|-|+|..+++- .| ..|.++..+ +....-+++ -.+....+..++|+-.. ..++. ...+.|++|
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN--GLrHGef~l----r~~~dEk~~~~~wn~~s-~vlav-~~~n~~~lw 321 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN--GLRHGEFDL----RVGCDEKAFLENWNLLS-TVLAV-AEGNLLKLW 321 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccC--CcccCCccc----cCCchhhhhhhhhhHHH-HHHHH-hhcceEEEE
Confidence 468999999999983 33 245555544 322211111 12344567778887765 44443 456779999
Q ss_pred EccC
Q 012721 296 DMRQ 299 (457)
Q Consensus 296 d~~~ 299 (457)
-..+
T Consensus 322 ttkN 325 (1243)
T COG5290 322 TTKN 325 (1243)
T ss_pred Eccc
Confidence 7665
No 446
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=82.20 E-value=34 Score=29.92 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=99.3
Q ss_pred CCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721 218 DFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l 294 (457)
......+.|..++.++-+. ....|+.+|+. .++..+...+++ ...--.++...+ .+....-.++...+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~------~~FgEGit~~~d--~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPP------RYFGEGITILGD--KLYQLTWKEGTGFV 114 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TT------T--EEEEEEETT--EEEEEESSSSEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCc------cccceeEEEECC--EEEEEEecCCeEEE
Confidence 3345678886677776664 34589999999 566555443332 122334445443 55566668899999
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccc
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~ 373 (457)
||..+-+.. ..+.- .+.=+.++ .+++.|+..+. ..++++|..+ .+....+.......+
T Consensus 115 yd~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 115 YDPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRP 173 (264)
T ss_dssp EETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE
T ss_pred EccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEE
Confidence 999876543 22222 12345666 55666666544 8999999865 566666554433211
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe---------------cCCCcceeeeeccC
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---------------AGKNENRKPILQAA 438 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~p~ 438 (457)
+..+..+.|- +|...|-.=....|..-|..+| .....+. ......+.+++.|.
T Consensus 174 ----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 174 ----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp -------------EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred ----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 0011345554 6666665555667777888888 3333221 11345688888776
Q ss_pred Cc
Q 012721 439 PR 440 (457)
Q Consensus 439 ~~ 440 (457)
..
T Consensus 242 ~~ 243 (264)
T PF05096_consen 242 TD 243 (264)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.32 E-value=52 Score=35.45 Aligned_cols=173 Identities=12% Similarity=0.121 Sum_probs=86.7
Q ss_pred EEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--------ecCCccEEEEEccCCeEEE
Q 012721 223 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--------HPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 223 ~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--------~p~~~~~l~~~~~dg~i~l 294 (457)
.+-+-|.=...-..-|+.+.+|+.+..++.. . +.+....|..|.. .|.= ++++.-..--.|.+
T Consensus 83 ~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~-~-------~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWITIDNNLFLWNYESDNELA-E-------YDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIVI 153 (1311)
T ss_pred eeccchhhcceEEEeCCeEEEEEcCCCCccc-c-------ccchhhhheeeeeecCCCCcchhhh-heeEEecccceEEE
Confidence 3444454445555578999999999534332 2 3334444555443 2322 23333334444555
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccC--C----CCceeEeeec
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM--D----STPVATFKIH 368 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~--~----~~~~~~~~~~ 368 (457)
+-+.-.+.... ...+..+ -.+......|.++....+|+.+.+|.|| .+|.+.- . ++....+...
T Consensus 154 lgV~~~~~~~~-~~~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 154 LGVSFDEFTGE-LSIFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred EEEEeccccCc-ccccccc-------eeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCc
Confidence 54433221110 0111110 0001113568899988999999999887 4554421 0 1100011000
Q ss_pred ----cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 369 ----EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 369 ----~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
...++.+..+. ....-+|..+........+.+-++.|+|.+|++..
T Consensus 224 ~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhHHHHhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 00011111111 00111336888887788999999999999999986
No 448
>PRK10115 protease 2; Provisional
Probab=81.14 E-value=70 Score=32.87 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=36.9
Q ss_pred eEEEeCCCCCEEEEe-C-C-----CeEEEEEcCCCc-ceeeeeecCCCcccCCCCceE-EEEEecCCccEEEEEc---cC
Q 012721 222 NSISNNSDCETFVSA-D-D-----LRINLWNLEISD-QCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSS---SR 289 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~-d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~---~d 289 (457)
..++|.+|++.|+.. . + ..|+.+++.+.. +...++ ++...... .+..+.++ .+++..+ .+
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~-------~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~ 246 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVY-------EEKDDTFYVSLHKTTSK-HYVVIHLASATT 246 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEE-------eeCCCCEEEEEEEcCCC-CEEEEEEECCcc
Confidence 458999988876664 3 2 367788887432 222232 22222222 23333366 5544443 34
Q ss_pred CeEEEEEcc
Q 012721 290 GFVRLVDMR 298 (457)
Q Consensus 290 g~i~lwd~~ 298 (457)
+.+.+|+..
T Consensus 247 ~~~~l~~~~ 255 (686)
T PRK10115 247 SEVLLLDAE 255 (686)
T ss_pred ccEEEEECc
Confidence 578888853
No 449
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.67 E-value=52 Score=31.06 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=67.2
Q ss_pred CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceee--eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721 217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN--IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l 294 (457)
....+..+.+.+++..++++.+|.+..=+- .++... .+.. .........+.++.|.+++ ..+++ +..|.+..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d--~G~~~~~~~f~~--~~~~~~~~~l~~v~~~~d~-~~~a~-G~~G~v~~ 352 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGLYVSKG--TGLTEEDFDFEE--ADIKSRGFGILDVGYRSKK-EAWAA-GGSGILLR 352 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceEEEecC--CCCcccccceee--cccCCCCcceEEEEEcCCC-cEEEE-ECCCcEEE
Confidence 345678899999999998887777655332 232111 1100 0011122458889999887 65554 56676555
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEE
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~w 353 (457)
.. ..++ .|.. .... ..-...++.+.|.++++.+++|.+|.|.-|
T Consensus 353 s~-D~G~-------tW~~-~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 353 ST-DGGK-------SWKR-DKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eC-CCCc-------ceeE-cccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 43 3332 2221 0000 011246789999988999999988877654
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.95 E-value=49 Score=31.86 Aligned_cols=82 Identities=7% Similarity=0.050 Sum_probs=49.6
Q ss_pred CeeEEEeCCCCCEEEEe-CCCeEEEEEcCC--------Ccce---eeeeecCCCcc-cCCCCceEEEEEecCC--ccEEE
Q 012721 220 NINSISNNSDCETFVSA-DDLRINLWNLEI--------SDQC---FNIVDMKPSNM-DDLTEVITSAEFHPIY--CNLLA 284 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~--------~~~~---~~~~~~~~~~~-~~~~~~i~~v~~~p~~--~~~l~ 284 (457)
.|..+..++.|..++-+ .+|.+.++=.+. .++. -+++.+...-+ ....-.+..++|+|+. ...|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 57778888988888776 777665543111 1111 11111111111 1122346678899986 46778
Q ss_pred EEccCCeEEEEEccCCe
Q 012721 285 YSSSRGFVRLVDMRQSA 301 (457)
Q Consensus 285 ~~~~dg~i~lwd~~~~~ 301 (457)
.-+.|..||+||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999998753
No 451
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.88 E-value=6.1 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=20.0
Q ss_pred cCCceEEEEECCCCCEEEEEe-CC--CeEEEE
Q 012721 31 DVDIVSAIEFDKTGDYLAVGD-RG--GRVILF 59 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~-~d--g~i~iw 59 (457)
....-.+..|||||+.|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455678899999998887654 44 556565
No 452
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.46 E-value=19 Score=25.42 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=27.3
Q ss_pred ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 287 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..+|.+.-||..+++.. .++.+ -..-+.+++++|+.+++.+.-
T Consensus 34 ~~~GRll~ydp~t~~~~----vl~~~--------------L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETT----VLLDG--------------LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp ---EEEEEEETTTTEEE----EEEEE--------------ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCcCEEEEECCCCeEE----EehhC--------------CCccCeEEEcCCCCEEEEEec
Confidence 34678888998887642 22222 235688999999998887743
No 453
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=79.34 E-value=5.9 Score=20.69 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=21.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~ 60 (457)
+.|.+++.. ..+++.+.+.+.+|||.
T Consensus 2 E~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 368888888 56899998889999974
No 454
>PRK10115 protease 2; Provisional
Probab=79.17 E-value=81 Score=32.42 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=24.5
Q ss_pred CceEEEEECCCCCEEEEEe-----CCCeEEEEEecCCc
Q 012721 33 DIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGK 65 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~-----~dg~i~iw~~~~~~ 65 (457)
-.+..+.+||||++||.+. +...|++.|+.++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 3577889999999998753 23358888887665
No 455
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.77 E-value=10 Score=37.62 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=40.7
Q ss_pred CCCCEEEEe-CCCeEEEEEcCC---CcceeeeeecCCCc----c-----------cCCCCceEEEEEec----CCccEEE
Q 012721 228 SDCETFVSA-DDLRINLWNLEI---SDQCFNIVDMKPSN----M-----------DDLTEVITSAEFHP----IYCNLLA 284 (457)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~~----~-----------~~~~~~i~~v~~~p----~~~~~l~ 284 (457)
++...++.+ .||.+....... .+............ + ......+..+++++ +. .+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 456667777 888888887763 22222221111100 0 01123455566665 44 7999
Q ss_pred EEccCCeEEEEEccCCee
Q 012721 285 YSSSRGFVRLVDMRQSAL 302 (457)
Q Consensus 285 ~~~~dg~i~lwd~~~~~~ 302 (457)
+.+.|+++|+||+.++++
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999999876
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.04 E-value=56 Score=29.91 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=84.3
Q ss_pred CCeeEEEeCC-CCCEEEEeCCCe------EEEEEcCCCc---ceeeeeecCCCcccCC--------CCceEEEEEecCCc
Q 012721 219 FNINSISNNS-DCETFVSADDLR------INLWNLEISD---QCFNIVDMKPSNMDDL--------TEVITSAEFHPIYC 280 (457)
Q Consensus 219 ~~v~~~~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~~~~~~~~~~~~~--------~~~i~~v~~~p~~~ 280 (457)
+.+..+.+.+ ++.+++.++++. +..+++.... ..+..... ..+..- ....-+|++.+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~~~G~~~~~~~~D~Egi~~~~~g- 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDM--IPLRDPDGQPFPKNGLDPEGIAVPPDG- 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccc--eeccCCCCCcCCcCCCChhHeEEecCC-
Confidence 4577889985 555555557666 6666655311 11111110 011111 1134577887777
Q ss_pred cEEEEEccC------CeEEEEEccCCeeeccccccccccccccCcc-cceeccccceEEEEEccCCCeEEEEe------c
Q 012721 281 NLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSK-SFFTEIIASISDIKFANDGQHLLSRD------Y 347 (457)
Q Consensus 281 ~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s~~------~ 347 (457)
.++++.-.+ ..|..++.. +..... ..+-.. ..+... ..-...+...-+|+++|+|+.|+++. +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~-~~vP~~--~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRR-FPVPAA--FLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-Ccccce-Eccccc--cccccCccccccCCCCeEEEEECCCCCEEEEEECccccCC
Confidence 777777777 788888866 433210 001000 000000 01122356789999999999655432 2
Q ss_pred C--c-------EEEEeccC--CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 348 M--N-------LKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 348 ~--~-------i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
+ . ++++.... .+.....+...-..+.. ......+..+.+-+++++|+-
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEEE
Confidence 1 2 55655542 13334333322221000 001223468889999987763
No 457
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.98 E-value=52 Score=35.32 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.6
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCC
Q 012721 393 SGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 393 s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
++++..++++-.||.+..||...+
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCC
Confidence 778999999999999999999987
No 458
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.59 E-value=57 Score=31.12 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=24.7
Q ss_pred cceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 387 KFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 387 v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+.++...+..+.|++...+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 368888888899999999999999999853
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.14 E-value=19 Score=35.83 Aligned_cols=29 Identities=10% Similarity=0.431 Sum_probs=25.0
Q ss_pred CCCEEEEeeCCCeEEEEEecccceeEEEe
Q 012721 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKE 154 (457)
Q Consensus 126 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~ 154 (457)
+..++++.+.|+.+|+||+.++.+.....
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 56789999999999999999998866554
No 460
>PHA03098 kelch-like protein; Provisional
Probab=75.78 E-value=87 Score=31.01 Aligned_cols=23 Identities=4% Similarity=-0.080 Sum_probs=14.8
Q ss_pred CCccEEEEEccC--------CeEEEEEccCCe
Q 012721 278 IYCNLLAYSSSR--------GFVRLVDMRQSA 301 (457)
Q Consensus 278 ~~~~~l~~~~~d--------g~i~lwd~~~~~ 301 (457)
++ .+++.|+.+ ..+.+||..+++
T Consensus 437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CC-EEEEECCccCCCCCcccceEEEecCCCCc
Confidence 44 677777643 237888887753
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=75.28 E-value=11 Score=21.36 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=18.5
Q ss_pred CCCceEEEEEecCCccEEEEEc-cC--CeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSS-SR--GFVRLV 295 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~-~d--g~i~lw 295 (457)
....-....|+||| +.|+..+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDG-k~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDG-KYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTS-SEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCC-CEEEEEecCCCCCCcCEE
Confidence 44567788999999 6665554 45 555555
No 462
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=72.90 E-value=1.2e+02 Score=31.49 Aligned_cols=81 Identities=5% Similarity=-0.093 Sum_probs=48.0
Q ss_pred cceEEEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEe-e--ecccccc-ccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 328 ASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF-K--IHEHLRP-KLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
..|.+++...-+.+++.. .||+|.++|-.+ -+.+... . .....+. .....+.-+++-....++|||.+..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 567777777767777755 679999999865 3333222 0 0111010 00011111222233568999999999999
Q ss_pred eCCCcEE
Q 012721 403 SYSNLLR 409 (457)
Q Consensus 403 ~~dg~i~ 409 (457)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999866
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.88 E-value=1.3e+02 Score=31.55 Aligned_cols=74 Identities=16% Similarity=0.102 Sum_probs=49.8
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceee-eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
..-..+.|.++...|+.+....+.++|++ ...... ++ .......|..+.-+|..+.+++.- ....|...|+
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~-~~~~~~~l~------~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~ 275 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFE-SNWQTEYLV------TAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDV 275 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECC-CCCccchhc------cCCChhheeeEEecCCccceEEEE-ecCeEEEEEc
Confidence 44567889889899999988899999998 333322 21 233557789998888742333322 3467777787
Q ss_pred cCC
Q 012721 298 RQS 300 (457)
Q Consensus 298 ~~~ 300 (457)
...
T Consensus 276 ~~~ 278 (765)
T PF10214_consen 276 KSS 278 (765)
T ss_pred cCC
Confidence 763
No 464
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=72.44 E-value=1.2e+02 Score=31.08 Aligned_cols=73 Identities=12% Similarity=-0.015 Sum_probs=42.2
Q ss_pred CceEEEEEecCCccEEEEEccCC-----eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
+.-..++|-|.| ..+++-..|| .|.++..+.-..- -+.. -.+....+..++|+-....+
T Consensus 247 g~e~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHG-----ef~l----------r~~~dEk~~~~~wn~~s~vl 310 (1243)
T COG5290 247 GMEHQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHG-----EFDL----------RVGCDEKAFLENWNLLSTVL 310 (1243)
T ss_pred cchhccccccCC-ceeeeeccCCCCCcceEEEEccCCcccC-----Cccc----------cCCchhhhhhhhhhHHHHHH
Confidence 333457899999 8888876554 3555543321100 0000 01112346677777766667
Q ss_pred EEEecCcEEEEecc
Q 012721 343 LSRDYMNLKLWDIR 356 (457)
Q Consensus 343 ~s~~~~~i~~wd~~ 356 (457)
+.+..+.+++|-..
T Consensus 311 av~~~n~~~lwttk 324 (1243)
T COG5290 311 AVAEGNLLKLWTTK 324 (1243)
T ss_pred HHhhcceEEEEEcc
Confidence 76666899999764
No 465
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=71.91 E-value=22 Score=36.75 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=42.1
Q ss_pred ceEEEcCCCcEEEE-EeCCC-----cEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721 388 FECSVSGDGLHFAT-GSYSN-----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (457)
Q Consensus 388 ~~~~~s~d~~~l~s-~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 441 (457)
.+-+|||||++|+- .+.++ .|++-++.+....+..+....+.|........|-.
T Consensus 353 ~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 353 YHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDT 412 (912)
T ss_pred ecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCe
Confidence 58899999999997 55544 59999999877778888888888777766665543
No 466
>PHA03098 kelch-like protein; Provisional
Probab=71.40 E-value=1.1e+02 Score=30.26 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=15.7
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCC
Q 012721 395 DGLHFATGSYS-----NLLRIFSHGVG 416 (457)
Q Consensus 395 d~~~l~s~~~d-----g~i~iw~~~~~ 416 (457)
++.+++.|+.+ +.+.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 67777777754 46888887766
No 467
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=70.90 E-value=78 Score=28.32 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=62.4
Q ss_pred CCeeEEEeCCC-C----CEEEEe--CCCeEEEEEcCCCcceeeeeecCCC-------------cccCCCCceEEEEEec-
Q 012721 219 FNINSISNNSD-C----ETFVSA--DDLRINLWNLEISDQCFNIVDMKPS-------------NMDDLTEVITSAEFHP- 277 (457)
Q Consensus 219 ~~v~~~~~~~~-~----~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~v~~~p- 277 (457)
..+..+.+... + .++..+ ..+.|.++|+. .++..++...... .+. ....+..++.+|
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~-~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~-~~dg~~gial~~~ 138 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLA-TGKSWRVLHNSFSPDPDAGPFTIGGESFQ-WPDGIFGIALSPI 138 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETT-TTEEEEEETCGCTTS-SSEEEEETTEEEE-ETTSEEEEEE-TT
T ss_pred cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEcc-CCcEEEEecCCcceeccccceeccCceEe-cCCCccccccCCC
Confidence 34566666431 1 244444 56789999998 5666555421100 000 112356666655
Q ss_pred --CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecc-ccceEEEEEccCCCeEEEEec-CcEEEE
Q 012721 278 --IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDY-MNLKLW 353 (457)
Q Consensus 278 --~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~-~~i~~w 353 (457)
++ +.|......+. ++|-+.+..+.... .... ........ .-+. .+....++++++|.+.++--. +.|..|
T Consensus 139 ~~d~-r~LYf~~lss~-~ly~v~T~~L~~~~--~~~~-~~~~~~v~-~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w 212 (287)
T PF03022_consen 139 SPDG-RWLYFHPLSSR-KLYRVPTSVLRDPS--LSDA-QALASQVQ-DLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCW 212 (287)
T ss_dssp STTS--EEEEEETT-S-EEEEEEHHHHCSTT----HH-H-HHHT-E-EEEE---SECEEEEETTTEEEEEECCCTEEEEE
T ss_pred CCCc-cEEEEEeCCCC-cEEEEEHHHhhCcc--cccc-ccccccce-eccccCCCCceEEECCCCcEEEecCCCCeEEEE
Confidence 55 55655554432 44554443221110 0000 00000000 1111 235667888998887777654 999999
Q ss_pred eccC
Q 012721 354 DIRM 357 (457)
Q Consensus 354 d~~~ 357 (457)
+...
T Consensus 213 ~~~~ 216 (287)
T PF03022_consen 213 DPDG 216 (287)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 9864
No 468
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.48 E-value=47 Score=25.56 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=45.6
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeec----cccccccccccccCcccceeccccceEEEEEcc-----CCCeEE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRDAAESHGSKSFFTEIIASISDIKFAN-----DGQHLL 343 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~g~~l~ 343 (457)
-.|.... ..|++++.-|+|.|++........ ..++.+. -...|++++-.+ +...|+
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--------------in~~italaaG~l~~~~~~D~Ll 68 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--------------INQEITALAAGRLKPDDGRDCLL 68 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEE--------------CCCceEEEEEEecCCCCCcCEEE
Confidence 3566666 578888888999999876542211 1112222 245677775544 356788
Q ss_pred EEecCcEEEEeccC
Q 012721 344 SRDYMNLKLWDIRM 357 (457)
Q Consensus 344 s~~~~~i~~wd~~~ 357 (457)
.|+...+..||+..
T Consensus 69 iGt~t~llaYDV~~ 82 (136)
T PF14781_consen 69 IGTQTSLLAYDVEN 82 (136)
T ss_pred EeccceEEEEEccc
Confidence 89889999999975
No 469
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=70.19 E-value=88 Score=28.61 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=37.0
Q ss_pred CCCCCeeEEEeCCCCCEEEEe-C-----CC--e-------EEEEEcC--CCcceeee--eecCCCcccCCCCceEEEEEe
Q 012721 216 AHDFNINSISNNSDCETFVSA-D-----DL--R-------INLWNLE--ISDQCFNI--VDMKPSNMDDLTEVITSAEFH 276 (457)
Q Consensus 216 ~h~~~v~~~~~~~~~~~l~~~-~-----d~--~-------i~iwd~~--~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~ 276 (457)
..+..+-+++++|+|+.|+++ . |+ . ++++... ..+..... +.+.+.........+..+.+.
T Consensus 144 ~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al 223 (326)
T PF13449_consen 144 RNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL 223 (326)
T ss_pred cCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE
Confidence 345578899999999965553 2 22 1 4554444 21222222 211110011145678888888
Q ss_pred cCCccEEEE
Q 012721 277 PIYCNLLAY 285 (457)
Q Consensus 277 p~~~~~l~~ 285 (457)
+++ .+|+.
T Consensus 224 ~d~-~lLvL 231 (326)
T PF13449_consen 224 PDG-RLLVL 231 (326)
T ss_pred CCC-cEEEE
Confidence 888 65554
No 470
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.84 E-value=70 Score=27.35 Aligned_cols=97 Identities=6% Similarity=0.121 Sum_probs=60.5
Q ss_pred eEEEEEccCCCeEEEEe--cCcEEEEeccCC-C-----CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 330 ISDIKFANDGQHLLSRD--YMNLKLWDIRMD-S-----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 330 v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
-+.++|+.+.+.+..-+ +-+|.-||.+.+ + +.+..++..... +...+| .++...+|.+.++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~-----e~~~PD------Gm~ID~eG~L~Va 228 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF-----ESLEPD------GMTIDTEGNLYVA 228 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc-----CCCCCC------cceEccCCcEEEE
Confidence 35788888877776543 267777884321 2 222222211110 000111 3555667887777
Q ss_pred EeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 402 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
.-.-++|...|..+| +.+..+.--...+++.+|-.-
T Consensus 229 ~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCC
Confidence 777889999999999 777777777888999988743
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=69.25 E-value=80 Score=27.77 Aligned_cols=157 Identities=9% Similarity=0.023 Sum_probs=90.7
Q ss_pred CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc
Q 012721 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~ 298 (457)
.-..++-.|||..-+++ ..+.|--.|.. .++.... -.+.......|...||| ..-++-+.. -|.-.|-+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~-tGev~~y-------pLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dpk 132 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPA-TGEVETY-------PLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDPK 132 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCC-CCceEEE-------ecCCCCCCceEEECCCC-CeeEecCcc-eeEEecCc
Confidence 34567788899888888 77888778877 4444332 12233445677788888 444433222 45555655
Q ss_pred CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccc
Q 012721 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 378 (457)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 378 (457)
+.+. ..|.. . ..--........|.+.|.+-+++..|.-- .++.....+..+....+.-.
T Consensus 133 t~ev-----t~f~l-p--------~~~a~~nlet~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpaPqG~gp----- 191 (353)
T COG4257 133 TLEV-----TRFPL-P--------LEHADANLETAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPAPQGGGP----- 191 (353)
T ss_pred ccce-----EEeec-c--------cccCCCcccceeeCCCccEEEeeccccce--ecCcccCceeeeccCCCCCC-----
Confidence 5432 12221 0 01113567788999999988887531111 11111234444444333211
Q ss_pred cCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 379 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+.++..|||..-++.-.++.|-.-|-.++
T Consensus 192 ---------yGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 192 ---------YGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ---------cceEECCCCcEEEEeccccceEEcccccC
Confidence 47888899988877666777777776666
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=67.41 E-value=83 Score=27.28 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=65.5
Q ss_pred EEEecCCccEEEEEcc-C--CeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 273 AEFHPIYCNLLAYSSS-R--GFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~-d--g~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
-.+.++| ++|.+|+. + ..+++++... ... ..+...... -....+-..+..-|||+.|+.|+.
T Consensus 72 g~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~-----~~w~e~~~~-------m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 72 GAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGT-----CDWTESPND-------MQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred cCCCCCC-CEEEeCCCCccccceEEEecCCCCCC-----CCceECccc-------ccCCCccccceECCCCCEEEEeCcC
Confidence 3577899 99988874 3 3477777544 100 111110000 011234556666789999998754
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
.+..+|.-.........+........ ......+ -.+...|||++++.+..+. .|||..+. +....+..
T Consensus 139 ~~t~E~~P~~~~~~~~~~~~~l~~~~~-----~~~~nlY--P~~~llPdG~lFi~an~~s--~i~d~~~n-~v~~~lP~ 207 (243)
T PF07250_consen 139 NPTYEFWPPKGPGPGPVTLPFLSQTSD-----TLPNNLY--PFVHLLPDGNLFIFANRGS--IIYDYKTN-TVVRTLPD 207 (243)
T ss_pred CCcccccCCccCCCCceeeecchhhhc-----cCccccC--ceEEEcCCCCEEEEEcCCc--EEEeCCCC-eEEeeCCC
Confidence 45556654221111111110000000 0011111 2577789999998888754 46688877 33344443
No 473
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=65.79 E-value=1.9e+02 Score=30.80 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=73.5
Q ss_pred CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccccc
Q 012721 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (457)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 317 (457)
++.++.|++-..+..+..+. -.+-.+.+. +..|.+ .++++ +....+++||+...++. +..+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh-----~T~~~~~v~--Ai~~f~-~~~La-gvG~~l~~YdlG~K~lL----Rk~e~----- 972 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLH-----KTEIPGPVG--AICPFQ-GRVLA-GVGRFLRLYDLGKKKLL----RKCEL----- 972 (1205)
T ss_pred CCceEEEEEEecCceeeeee-----ccCCCccce--EEeccC-CEEEE-ecccEEEEeeCChHHHH----hhhhh-----
Confidence 45577777654555443320 112223443 455776 44444 45678999999887654 22111
Q ss_pred CcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721 318 GSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 318 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 396 (457)
..-...|+.+++. +..++.|+- ..+.++-.+...+.+..+....-... ......-|-
T Consensus 973 ------k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~--------------Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 973 ------KFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRH--------------VTALELLDY 1030 (1205)
T ss_pred ------ccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccce--------------eeEEEEecC
Confidence 0012457777665 667777764 66666655544555555554333221 123333355
Q ss_pred cEEEEEeCCCcEEEEecC
Q 012721 397 LHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 397 ~~l~s~~~dg~i~iw~~~ 414 (457)
..+|.+..-|.+.+-.+.
T Consensus 1031 ~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1031 DTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CceeeccccCcEEEEECC
Confidence 567666666766665554
No 474
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.47 E-value=1.3e+02 Score=28.67 Aligned_cols=120 Identities=10% Similarity=0.204 Sum_probs=75.5
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
+++|.++.| ++|.+.+|.--.|.+|.+++....+......
T Consensus 66 ~G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-------------------------------------- 105 (657)
T KOG2377|consen 66 KGEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-------------------------------------- 105 (657)
T ss_pred CCceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHH--------------------------------------
Confidence 378999999 7999999999999999999875443222110
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
.+| +..+..|....|..+ .-+|.-.+..+-+|-+......++. .+.|...|.-
T Consensus 106 --------------~~c-----k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRl-------Vks~~~nvnW 158 (657)
T KOG2377|consen 106 --------------QEC-----KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRL-------VKSHNLNVNW 158 (657)
T ss_pred --------------HHh-----ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhh-------hhhcccCccE
Confidence 011 233445788888755 4555555666777766644444443 4567777877
Q ss_pred EEEecCCccEEEEEc--cCCeEEEEEccCC
Q 012721 273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQS 300 (457)
Q Consensus 273 v~~~p~~~~~l~~~~--~dg~i~lwd~~~~ 300 (457)
-.|.++. +.++.++ ..+++.=+.++++
T Consensus 159 y~yc~et-~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 159 YMYCPET-AVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEcccc-ceEeeeccccccccccEEEeec
Confidence 8888887 5443333 3444444444443
No 475
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=63.37 E-value=52 Score=33.62 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=47.2
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
-..++.+.++..| ++-++.+|.|.++...+.... ..... ...|...|+.+.+..+|-+++-+
T Consensus 625 g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~----~~lea----------hqee~~~Vthm~~~~~gVwvafa 686 (925)
T KOG3522|consen 625 GSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRS----WDLEA----------HQEEAHSVTHMLYLDNGVWVAFA 686 (925)
T ss_pred CCccccchhhhhc----eeeeecCCceEEEechhcccc----chhHH----------HHhhcceEEEEEeeCCceEEEEc
Confidence 3456777777654 456778999999988764321 11111 12345679999999888888766
Q ss_pred ecCcEEEEeccC
Q 012721 346 DYMNLKLWDIRM 357 (457)
Q Consensus 346 ~~~~i~~wd~~~ 357 (457)
+...+++++.++
T Consensus 687 sG~~~rlfhtet 698 (925)
T KOG3522|consen 687 SGDEERLFHTET 698 (925)
T ss_pred CCCEEEEecccc
Confidence 655666665543
No 476
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=63.34 E-value=1.3e+02 Score=28.10 Aligned_cols=152 Identities=9% Similarity=0.035 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe--c-CCccEEEEEccCCeEEEEEccC---Ceeeccccccccc
Q 012721 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRD 312 (457)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p-~~~~~l~~~~~dg~i~lwd~~~---~~~~~~~~~~~~~ 312 (457)
..|++|.+......+..+.-....+..-...++.+|+. | +|.-+.+....+|.+.-|-+.. +......++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 57999987632222322211000111122346777764 3 3424666677889888887752 2222233344443
Q ss_pred cccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeE-e-ee-ccccccccccccCCCCccccc
Q 012721 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-F-KI-HEHLRPKLCDLYNNDSIFDKF 388 (457)
Q Consensus 313 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~v~ 388 (457)
.+.+..|.......+|..+.+ --|.-|+.+........ + .. ..... -++-
T Consensus 207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~------------aDvE 260 (381)
T PF02333_consen 207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLV------------ADVE 260 (381)
T ss_dssp --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EE
T ss_pred --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccc------------cCcc
Confidence 356888888888888888875 55666676532221111 1 11 11111 1223
Q ss_pred eEEE--cCCC-cEEEE-EeCCCcEEEEecCCC
Q 012721 389 ECSV--SGDG-LHFAT-GSYSNLLRIFSHGVG 416 (457)
Q Consensus 389 ~~~~--s~d~-~~l~s-~~~dg~i~iw~~~~~ 416 (457)
.+++ .+++ .||+. .-.+++..||+....
T Consensus 261 Glaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 261 GLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 4444 3443 35554 445788999998754
No 477
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=63.33 E-value=1e+02 Score=26.98 Aligned_cols=200 Identities=7% Similarity=0.007 Sum_probs=98.3
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
.-...+.|. .+|.++-+.+.-| .|+.+|+.+++......++..-
T Consensus 45 aFTQGL~~~--~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-------------------------------- 90 (264)
T PF05096_consen 45 AFTQGLEFL--DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-------------------------------- 90 (264)
T ss_dssp -EEEEEEEE--ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------------------------
T ss_pred ccCccEEec--CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--------------------------------
Confidence 345677773 5677777777665 7888899998876554433211
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
---.++.. +++++.-. .++...+||.+ .-+.+..+. +. ..=
T Consensus 91 ----------------------------FgEGit~~-~d~l~qLTWk~~~~f~yd~~-tl~~~~~~~-----y~---~EG 132 (264)
T PF05096_consen 91 ----------------------------FGEGITIL-GDKLYQLTWKEGTGFVYDPN-TLKKIGTFP-----YP---GEG 132 (264)
T ss_dssp -----------------------------EEEEEEE-TTEEEEEESSSSEEEEEETT-TTEEEEEEE------S---SS-
T ss_pred ----------------------------cceeEEEE-CCEEEEEEecCCeEEEEccc-cceEEEEEe-----cC---Ccc
Confidence 11122332 33444455 78999999998 455555442 22 233
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~ 349 (457)
+.++ .++ ..|+.+..+..|+++|..+-+... .+.+... ..+ -..++.+.|- +|...|--= ...
T Consensus 133 WGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~-~i~V~~~--g~p---------v~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 133 WGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVR-TIQVTDN--GRP---------VSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp -EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEE-EEE-EET--TEE------------EEEEEEE-TTEEEEEETTSSE
T ss_pred eEEE--cCC-CEEEEECCccceEEECCcccceEE-EEEEEEC--CEE---------CCCcEeEEEE-cCEEEEEeCCCCe
Confidence 4555 556 556666667789999987654331 1111111 000 1345566665 443333221 256
Q ss_pred EEEEeccCCCCceeEeeecccccc--ccccccCCCCccccceEEEcCCC-cEEEEEeC
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRP--KLCDLYNNDSIFDKFECSVSGDG-LHFATGSY 404 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~ 404 (457)
|...|..+ ++....+....-... ........+.+. ..+++.|+. ++++||-.
T Consensus 197 I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVL--NGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 197 IVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVL--NGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-E--EEEEEETTTTEEEEEETT
T ss_pred EEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCee--EeEeEeCCCCEEEEEeCC
Confidence 66677765 665555432211000 000000011111 689998865 45556543
No 478
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=62.77 E-value=1.3e+02 Score=29.07 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=69.2
Q ss_pred EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC--------CeEEEEecCcEEEEecc
Q 012721 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--------QHLLSRDYMNLKLWDIR 356 (457)
Q Consensus 285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--------~~l~s~~~~~i~~wd~~ 356 (457)
.|.....++--|+.-|+.. ..|.. | ..+ -+.|.|+. +.|+.-++..|.-.|.+
T Consensus 485 dg~~~~kLykmDIErGkvv----eeW~~-------------~-ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR 545 (776)
T COG5167 485 DGGERDKLYKMDIERGKVV----EEWDL-------------K-DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPR 545 (776)
T ss_pred cCCCcccceeeecccceee----eEeec-------------C-Ccc-eeecCCchhHHhcCccceEEeecccceEEeccc
Confidence 3445556666677776544 34443 1 123 46677753 34454466556556766
Q ss_pred CCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721 357 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 436 (457)
..+..+.........- ..- ++........|||.|+..|-|++||-- |......+.+-...+..+..+
T Consensus 546 ~~gNKi~v~esKdY~t---------Kn~---Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvt 612 (776)
T COG5167 546 ARGNKIKVVESKDYKT---------KNK---FSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVT 612 (776)
T ss_pred ccCCceeeeeehhccc---------ccc---ccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEee
Confidence 5453333322211110 000 233344466799999999999999953 323344455666666666666
Q ss_pred cCCcce
Q 012721 437 AAPRAR 442 (457)
Q Consensus 437 p~~~~~ 442 (457)
.+|.-.
T Consensus 613 a~Gk~i 618 (776)
T COG5167 613 ANGKHI 618 (776)
T ss_pred cCCcEE
Confidence 666443
No 479
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=62.43 E-value=1.8e+02 Score=29.24 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=35.6
Q ss_pred EEEeCCCCCEEEEe-CC------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe----
Q 012721 223 SISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF---- 291 (457)
Q Consensus 223 ~~~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~---- 291 (457)
+++.. ++..+++| .| ..+..||.. ..+ +.. +.+ +....... .++ .-+| .+.++|+.||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~-W~~--~a~--M~~~R~~~-~v~-~l~g-~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPR-TNQ-WTP--VAP--MNTKRSDF-GVA-VLDG-KLYAVGGFDGEKSLN 396 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCC-CCc-eec--cCC--ccCccccc-eeE-EECC-EEEEEeccccccccc
Confidence 34443 45666666 66 467788877 333 222 111 11111111 111 1244 78899998864
Q ss_pred -EEEEEccCCe
Q 012721 292 -VRLVDMRQSA 301 (457)
Q Consensus 292 -i~lwd~~~~~ 301 (457)
+-.||..+.+
T Consensus 397 svE~YDp~~~~ 407 (571)
T KOG4441|consen 397 SVECYDPVTNK 407 (571)
T ss_pred cEEEecCCCCc
Confidence 6677777643
No 480
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=60.56 E-value=22 Score=19.03 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.9
Q ss_pred EEEEEeCCCcEEEEecCCCC
Q 012721 398 HFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 398 ~l~s~~~dg~i~iw~~~~~~ 417 (457)
.++.++.+|.++.+|..+|+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEEEEcCCCEEEEEEcccCc
Confidence 57778889999999999883
No 481
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=60.22 E-value=1.3e+02 Score=26.97 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=83.6
Q ss_pred eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc----cE-EEEEccCCeEEEEEccCCeeeccccccccccc
Q 012721 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (457)
Q Consensus 240 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~----~~-l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 314 (457)
.|.+||+. ..+.++.+.+++.... .......+.+....+ .+ .++=+..+-|.++|+.+++.. ++... .
T Consensus 35 KLv~~Dl~-t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~-~ 107 (287)
T PF03022_consen 35 KLVAFDLK-TNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHN-S 107 (287)
T ss_dssp EEEEEETT-TTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETC-G
T ss_pred EEEEEECC-CCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecC-C
Confidence 68889998 5667777766654343 456688888876321 23 333334568999999998654 22222 1
Q ss_pred cccCc--c-----cceeccccceEEEEEcc---CCCeEEEEecCcEEEEeccCC----CC---------ceeEeeecccc
Q 012721 315 ESHGS--K-----SFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMD----ST---------PVATFKIHEHL 371 (457)
Q Consensus 315 ~~~~~--~-----~~~~~h~~~v~~~~~s~---~g~~l~s~~~~~i~~wd~~~~----~~---------~~~~~~~~~~~ 371 (457)
..+.. . .........+..++.+| +|+.|.-..-..-++|.+.+. .. .+..+ +....
T Consensus 108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~ 186 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS 186 (287)
T ss_dssp CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---
T ss_pred cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC
Confidence 11111 0 00111223477777766 677777554333344444220 00 01111 11110
Q ss_pred ccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
.. -.++++++|.+.++--..+.|..|+...
T Consensus 187 ~s--------------~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 QS--------------DGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp SE--------------CEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred CC--------------ceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 00 3688999999999999999999999886
No 482
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=56.42 E-value=1.9e+02 Score=27.63 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=37.7
Q ss_pred CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
.+++.= .||.+.+|+-+ .- ....+ +.. .--...+.|.+.- ..|++++.+..+.-|....
T Consensus 146 ~~IcVQS~DG~L~~feqe-~~-~f~~~------lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQE-SF-AFSRF------LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQD 205 (418)
T ss_pred eEEEEEecCceEEEEeCC-cE-EEEEE------cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHHH
Confidence 344443 99999999977 22 22211 121 2223446788877 7899999999999887643
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.11 E-value=1.6e+02 Score=27.99 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.0
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCC
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEI 248 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~ 248 (457)
...-++++|++.++++-+.|.++++.++.
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 359 APQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred CcceeeeCcccchheeecCCceEEEEecC
Confidence 45568899999999888888999998874
No 484
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=55.02 E-value=1.6e+02 Score=26.53 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCcc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~ 66 (457)
-|++|...++|++|++.-.-.+|.+.+..+++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I 177 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI 177 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcE
Confidence 367778888999999998878888888777663
No 485
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=54.92 E-value=38 Score=23.76 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=22.4
Q ss_pred ceEEEcCCCcEEEEEeC-CCcEEEEecCC
Q 012721 388 FECSVSGDGLHFATGSY-SNLLRIFSHGV 415 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~-dg~i~iw~~~~ 415 (457)
..+.++|++++|..++. .+.|++|+.+.
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 47999999998887664 68899998753
No 486
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=53.93 E-value=1.6e+02 Score=26.07 Aligned_cols=150 Identities=14% Similarity=0.077 Sum_probs=77.2
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc---------CC
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RG 290 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---------dg 290 (457)
.-..+..-|||..-++-...-|.-.|.+ .. .+..+.+. .+.-........|.+.| ++-.++.. .+
T Consensus 105 ~Phgiv~gpdg~~Witd~~~aI~R~dpk-t~-evt~f~lp---~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~ 178 (353)
T COG4257 105 SPHGIVVGPDGSAWITDTGLAIGRLDPK-TL-EVTRFPLP---LEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARN 178 (353)
T ss_pred CCceEEECCCCCeeEecCcceeEEecCc-cc-ceEEeecc---cccCCCcccceeeCCCc-cEEEeeccccceecCcccC
Confidence 3445666777766655422144444544 11 22222222 23334566778899999 88877752 23
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeecc
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 369 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~ 369 (457)
.|++|+...+ ..-+.|+..|+|..-++.- ++.|-..|... + .-..+...+
T Consensus 179 ~i~vfpaPqG---------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~ 229 (353)
T COG4257 179 VISVFPAPQG---------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPN 229 (353)
T ss_pred ceeeeccCCC---------------------------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCC
Confidence 3444444332 3456788899998776642 24555555432 2 111222111
Q ss_pred ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
..-.. -..+--+|.|+.-+|-...+.++.+|-.+.
T Consensus 230 ~~~~g------------sRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 230 ALKAG------------SRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred ccccc------------ccccccCccCcEEEeccCCceeeEeCcccc
Confidence 10000 024445566777777666667776665543
No 487
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.85 E-value=23 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=15.9
Q ss_pred CCcEEEEEeCCCcEEEEecCC
Q 012721 395 DGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~ 415 (457)
.+..|+.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788899999999999764
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=53.04 E-value=56 Score=22.93 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCeEEEEec--CcEEEEecc
Q 012721 329 SISDIKFANDGQHLLSRDY--MNLKLWDIR 356 (457)
Q Consensus 329 ~v~~~~~s~~g~~l~s~~~--~~i~~wd~~ 356 (457)
..+.+.++|++++|..++- +.|++|+..
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4578899999999987763 899999864
No 489
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=52.49 E-value=1.1e+02 Score=31.92 Aligned_cols=46 Identities=7% Similarity=0.133 Sum_probs=33.4
Q ss_pred ccceEEEEEccCCCeEEEE-ec------CcEEEEeccCCCCceeEeeeccccc
Q 012721 327 IASISDIKFANDGQHLLSR-DY------MNLKLWDIRMDSTPVATFKIHEHLR 372 (457)
Q Consensus 327 ~~~v~~~~~s~~g~~l~s~-~~------~~i~~wd~~~~~~~~~~~~~~~~~~ 372 (457)
..+|.+..|||||+.||-+ +- ..|++-|+++.+.-+..+......+
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aai 401 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAI 401 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccc
Confidence 4678899999999999963 21 3589999987666555666555554
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.41 E-value=2.4e+02 Score=30.53 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~ 65 (457)
......++|+|.-.++|.|...|.|+++-...-+
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceE
Confidence 3467789999999999999999999999865433
No 491
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=51.86 E-value=59 Score=20.53 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCEEEEEeC-----CCeEEEEEecCC
Q 012721 34 IVSAIEFDKTGDYLAVGDR-----GGRVILFETVGG 64 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~-----dg~i~iw~~~~~ 64 (457)
.+++++.-|||++|+.|.. +....|+.+...
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 5788999999999999853 334556666543
No 492
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=51.44 E-value=35 Score=17.77 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=16.3
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEE
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
...++++++| +++++=+....|++|
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4667777777 666666666666553
No 493
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=48.34 E-value=79 Score=28.51 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=49.1
Q ss_pred ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721 329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (457)
Q Consensus 329 ~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 407 (457)
-+++|...++|.||+|.-. ..|.+.|-++ ++.+-.+.+....- +... -...+|-.|-+++-.+..++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~d-----f~~~-----~~~f~~QHdar~~~~~~~~~~ 213 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSD-----FTLP-----ATNFSWQHDARFLNESNDDGT 213 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCc-----cccc-----CCcEeeccCCEEeccCCCCCE
Confidence 3778888899999999876 8899998765 77777776552210 0000 013444445556655667788
Q ss_pred EEEEecC
Q 012721 408 LRIFSHG 414 (457)
Q Consensus 408 i~iw~~~ 414 (457)
|.|+|-.
T Consensus 214 IslFDN~ 220 (299)
T PF14269_consen 214 ISLFDNA 220 (299)
T ss_pred EEEEcCC
Confidence 8888863
No 494
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=47.92 E-value=1.9e+02 Score=25.20 Aligned_cols=113 Identities=10% Similarity=0.090 Sum_probs=58.2
Q ss_pred EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc----cCCC--eEEEEec
Q 012721 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA----NDGQ--HLLSRDY 347 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----~~g~--~l~s~~~ 347 (457)
.-+|+. ..+++....+-+++||+...++. .+.. +....+.+- -.|+ -|+++++
T Consensus 62 ~t~P~k-S~vItt~Kk~Gl~VYDLsGkqLq-----s~~~---------------Gk~NNVDLrygF~LgG~~idiaaASd 120 (364)
T COG4247 62 ATNPDK-SLVITTVKKAGLRVYDLSGKQLQ-----SVNP---------------GKYNNVDLRYGFQLGGQSIDIAAASD 120 (364)
T ss_pred cCCcCc-ceEEEeeccCCeEEEecCCCeee-----ecCC---------------CcccccccccCcccCCeEEEEEeccc
Confidence 346776 67777777888999999876432 1111 112222211 1232 2445554
Q ss_pred ---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE--cCC-Cc-EEEEEeCCCcEEEEecCC
Q 012721 348 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGD-GL-HFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 348 ---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~d-~~-~l~s~~~dg~i~iw~~~~ 415 (457)
..|.+|.++...+.+..+.....+... .+.+++.+++ +|. |. +++....+|.|.-|.+-.
T Consensus 121 R~~~~i~~y~Idp~~~~L~sitD~n~p~ss--------~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d 187 (364)
T COG4247 121 RQNDKIVFYKIDPNPQYLESITDSNAPYSS--------SSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLID 187 (364)
T ss_pred ccCCeEEEEEeCCCccceeeccCCCCcccc--------CcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEe
Confidence 788889887645555555433222110 1112234444 332 33 444555667777776543
No 495
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=47.04 E-value=4.2e+02 Score=28.97 Aligned_cols=142 Identities=9% Similarity=0.112 Sum_probs=72.1
Q ss_pred CCeEEEEEcCC----CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc-CCeeeccccccccc
Q 012721 238 DLRINLWNLEI----SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRD 312 (457)
Q Consensus 238 d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~ 312 (457)
-|.+.|+|+-. .+++..-..++....+...+.|..++ .-+| .|+++ ....|.+|++. ...+.. +...+
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G--~l~~~-~GqKI~v~~l~r~~~lig--VaFiD- 1136 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRG--HLLSS-QGQKIIVRKLDRDSELIG--VAFID- 1136 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEE-Eecc--EEEEc-cCcEEEEEEeccCCccee--eEEec-
Confidence 37889998752 23222222222222345567777665 3445 34443 45679999994 432211 00011
Q ss_pred cccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE
Q 012721 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (457)
Q Consensus 313 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (457)
-++.-....--.++|+.|+- ..|.+.-.......+..+...... ..++++.
T Consensus 1137 ---------------~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~-------------l~v~s~E 1188 (1366)
T KOG1896|consen 1137 ---------------LPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEP-------------LNVYSTE 1188 (1366)
T ss_pred ---------------cceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCch-------------hhceeee
Confidence 11222222223556666664 777776664322223223222221 1235777
Q ss_pred EcCCCc--EEEEEeCCCcEEEEecC
Q 012721 392 VSGDGL--HFATGSYSNLLRIFSHG 414 (457)
Q Consensus 392 ~s~d~~--~l~s~~~dg~i~iw~~~ 414 (457)
|--||. +++++..|+.|+++-..
T Consensus 1189 FLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1189 FLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 766654 67788889999988654
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=45.85 E-value=47 Score=33.47 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
...++++.-+|.++.++.+ .||+|.+|+.. +....++.. ...+-..+.|...| |++...|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~-~r~qski~~--------~~~p~~nlv~tnhg---l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFI-PRRQSKICE--------EAKPKENLVFTNHG---LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeec-ccchhhhhh--------hcCCccceeeeccc---eEEEeccchhheee
Confidence 3456788889999999999 99999999987 333322211 11223345555555 45555555555553
No 497
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=45.62 E-value=2.4e+02 Score=30.65 Aligned_cols=64 Identities=11% Similarity=0.000 Sum_probs=37.4
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEcc
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMR 298 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~ 298 (457)
+++|..| --..|.+.-..........+. -....-.++++.|--+|++ .++++..++.|++|-..
T Consensus 1148 knlIl~gDV~ksisfl~fqeep~rlsL~s-----rd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1148 KNLILAGDVMKSISFLGFQEEPYRLSLLS-----RDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhheehhhhhhceEEEEEccCceEEEEee-----cCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 4566666 555666655552222222211 1112235778888887744 67888899999998554
No 498
>PHA02790 Kelch-like protein; Provisional
Probab=44.68 E-value=3.1e+02 Score=26.77 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=15.2
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCC
Q 012721 395 DGLHFATGSYS-----NLLRIFSHGVG 416 (457)
Q Consensus 395 d~~~l~s~~~d-----g~i~iw~~~~~ 416 (457)
+++..+.|+.+ ..+..||..++
T Consensus 446 ~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 446 DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCEEEEECCcCCCcccceEEEEECCCC
Confidence 67777777754 35777777765
No 499
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=43.89 E-value=4.9e+02 Score=28.89 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=38.6
Q ss_pred EEEEEccCCCeEEEEec-CcE-EEEeccCCCCceeEeeecccccccc----ccccC------CCCcc-ccceEEEcCCCc
Q 012721 331 SDIKFANDGQHLLSRDY-MNL-KLWDIRMDSTPVATFKIHEHLRPKL----CDLYN------NDSIF-DKFECSVSGDGL 397 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~~-~~i-~~wd~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~-~v~~~~~s~d~~ 397 (457)
.+++++++|.+.++-+| ..| ++-.+.+.+ .+..+.+....+... |+.+. ++..+ ...+++.+|||.
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~ 674 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD 674 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence 68899999988877665 222 233333323 555555544433211 22222 22111 236788899988
Q ss_pred EEEEEe
Q 012721 398 HFATGS 403 (457)
Q Consensus 398 ~l~s~~ 403 (457)
.+++-.
T Consensus 675 v~IAD~ 680 (1899)
T KOG4659|consen 675 VIIADS 680 (1899)
T ss_pred EEEecC
Confidence 766433
No 500
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=43.61 E-value=3.5e+02 Score=28.52 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=49.8
Q ss_pred CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-------ceeeeee-------cCC--CcccCCCCceEEEEEecCCcc
Q 012721 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISD-------QCFNIVD-------MKP--SNMDDLTEVITSAEFHPIYCN 281 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-------~~~~~~~-------~~~--~~~~~~~~~i~~v~~~p~~~~ 281 (457)
-.|.|+.-+.+|+.+++| .| +.+|.+.-.. ++.++-- .-| ..+.-|.+.|..++..... .
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsR-g 258 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSR-G 258 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecccc-c
Confidence 367888888889999999 66 7777764211 1111000 000 0123455778888887766 6
Q ss_pred EEEEEccCCeEEEEEccCCe
Q 012721 282 LLAYSSSRGFVRLVDMRQSA 301 (457)
Q Consensus 282 ~l~~~~~dg~i~lwd~~~~~ 301 (457)
+|.+-+....|+-|.+....
T Consensus 259 ~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 259 LLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred ceeeecccceeeeEeeeccc
Confidence 77777778888888876643
Done!